WorldWideScience

Sample records for nutrient-limited ecosystem model

  1. Emergence of nutrient limitation in tropical dry forests: hypotheses from simulation models

    Science.gov (United States)

    Medvigy, D.; Waring, B. G.; Xu, X.; Trierweiler, A.; Werden, L. K.; Wang, G.; Zhu, Q.; Powers, J. S.

    2017-12-01

    It is unclear to what extent tropical dry forest productivity may be limited by nutrients. Direct assessment of nutrient limitation through fertilization experiments has been rare, and paradigms pertaining to other ecosystems may not extend to tropical dry forests. For example, because dry tropical forests have a lower water supply than moist tropical forests, dry forests can have lower decomposition rates, higher soil carbon and nitrogen concentrations, and a more open nitrogen cycle than moist forests. We used a mechanistic, numerical model to generate hypotheses about nutrient limitation in tropical dry forests. The model dynamically couples ED2 (vegetation dynamics), MEND (biogeochemistry), and N-COM (plant-microbe competition for nutrients). Here, the MEND-component of the model has been extended to include nitrogen (N) and phosphorus (P) cycles. We focus on simulation of sixteen 25m x 25m plots in Costa Rica where a fertilization experiment has been underway since 2015. Baseline simulations are characterized by both nitrogen and phosphorus limitation of vegetation. Fertilization with N and P increased vegetation biomass, with N fertilization having a somewhat stronger effect. Nutrient limitation was also sensitive to climate and was more pronounced during drought periods. Overflow respiration was identified as a key process that mitigated nutrient limitation. These results suggest that, despite often having richer soils than tropical moist forests, tropical dry forests can also become nutrient-limited. If the climate becomes drier in the next century, as is expected for Central America, drier soils may decrease microbial activity and exacerbate nutrient limitation. The importance of overflow respiration underscores the need for appropriate treatment of microbial dynamics in ecosystem models. Ongoing and new nutrient fertilization experiments will present opportunities for testing whether, and how, nutrient limitation may indeed be emerging in tropical dry

  2. Global comparison reveals biogenic weathering as driven by nutrient limitation at ecosystem scale

    Science.gov (United States)

    Boy, Jens; Godoy, Roberto; Dechene, Annika; Shibistova, Olga; Amir, Hamid; Iskandar, Issi; Fogliano, Bruno; Boy, Diana; McCulloch, Robert; Andrino, Alberto; Gschwendtner, Silvia; Marin, Cesar; Sauheitl, Leopold; Dultz, Stefan; Mikutta, Robert; Guggenberger, Georg

    2017-04-01

    A substantial contribution of biogenic weathering in ecosystem nutrition, especially by symbiotic microorganisms, has often been proposed, but large-scale in vivo studies are still missing. Here we compare a set of ecosystems spanning from the Antarctic to tropical forests for their potential biogenic weathering and its drivers. To address biogenic weathering rates, we installed mineral mesocosms only accessible for bacteria and fungi for up to 4 years, which contained freshly broken and defined nutrient-baring minerals in soil A horizons of ecosystems along a gradient of soil development differing in climate and plant species communities. Alterations of the buried minerals were analyzed by grid-intersection, confocal lascer scanning microscopy, energy-dispersive X-ray spectroscopy, and X-ray photoelectron spectroscopy on the surface and on thin sections. On selected sites, carbon fluxes were tracked by 13C labeling, and microbial community was identified by DNA sequencing. In young ecosystems (protosoils) biogenic weathering is almost absent and starts after first carbon accumulation by aeolian (later litter) inputs and is mainly performed by bacteria. With ongoing soil development and appearance of symbiotic (mycorrhized) plants, nutrient availability in soil increasingly drove biogenic weathering, and fungi became the far more important players than bacteria. We found a close relation between fungal biogenic weathering and available potassium across all 16 forested sites in the study, regardless of the dominant mycorrhiza type (AM or EM), climate, and plant-species composition. We conclude that nutrient limitations at ecosystem scale are generally counteracted by adapted fungal biogenic weathering. The close relation between fungal weathering and plant-available nutrients over a large range of severely contrasting ecosystems points towards a direct energetic support of these weathering processes by the photoautotrophic community, making biogenic weathering a

  3. Aggregated filter-feeding consumers alter nutrient limitation: consequences for ecosystem and community dynamics.

    Science.gov (United States)

    Atkinson, Carla L; Vaughn, Caryn C; Forshay, Kenneth J; Cooper, Joshua T

    2013-06-01

    Nutrient cycling is a key process linking organisms in ecosystems. This is especially apparent in stream environments in which nutrients are taken up readily and cycled through the system in a downstream trajectory. Ecological stoichiometry predicts that biogeochemical cycles of different elements are interdependent because the organisms that drive these cycles require fixed ratios of nutrients. There is growing recognition that animals play an important role in biogeochemical cycling across ecosystems. In particular, dense aggregations of consumers can create biogeochemical hotspots in aquatic ecosystems via nutrient translocation. We predicted that filter-feeding freshwater mussels, which occur as speciose, high-biomass aggregates, would create biogeochemical hotspots in streams by altering nutrient limitation and algal dynamics. In a field study, we manipulated nitrogen and phosphorus using nutrient-diffusing substrates in areas with high and low mussel abundance, recorded algal growth and community composition, and determined in situ mussel excretion stoichiometry at 18 sites in three rivers (Kiamichi, Little, and Mountain Fork Rivers, south-central United States). Our results indicate that mussels greatly influence ecosystem processes by modifying the nutrients that limit primary productivity. Sites without mussels were N-limited with -26% higher relative abundances of N-fixing blue-green algae, while sites with high mussel densities were co-limited (N and P) and dominated by diatoms. These results corroborated the results of our excretion experiments; our path analysis indicated that mussel excretion has a strong influence on stream water column N:P. Due to the high N:P of mussel excretion, strict N-limitation was alleviated, and the system switched to being co-limited by both N and P. This shows that translocation of nutrients by mussel aggregations is important to nutrient dynamics and algal species composition in these rivers. Our study highlights the

  4. Nutrient limitation of soil microbial activity during the earliest stages of ecosystem development.

    Science.gov (United States)

    Castle, Sarah C; Sullivan, Benjamin W; Knelman, Joseph; Hood, Eran; Nemergut, Diana R; Schmidt, Steven K; Cleveland, Cory C

    2017-11-01

    A dominant paradigm in ecology is that plants are limited by nitrogen (N) during primary succession. Whether generalizable patterns of nutrient limitation are also applicable to metabolically and phylogenetically diverse soil microbial communities, however, is not well understood. We investigated if measures of N and phosphorus (P) pools inform our understanding of the nutrient(s) most limiting to soil microbial community activities during primary succession. We evaluated soil biogeochemical properties and microbial processes using two complementary methodological approaches-a nutrient addition microcosm experiment and extracellular enzyme assays-to assess microbial nutrient limitation across three actively retreating glacial chronosequences. Microbial respiratory responses in the microcosm experiment provided evidence for N, P and N/P co-limitation at Easton Glacier, Washington, USA, Puca Glacier, Peru, and Mendenhall Glacier, Alaska, USA, respectively, and patterns of nutrient limitation generally reflected site-level differences in soil nutrient availability. The activities of three key extracellular enzymes known to vary with soil N and P availability developed in broadly similar ways among sites, increasing with succession and consistently correlating with changes in soil total N pools. Together, our findings demonstrate that during the earliest stages of soil development, microbial nutrient limitation and activity generally reflect soil nutrient supply, a result that is broadly consistent with biogeochemical theory.

  5. Nutrient limitation on ecosystem productivity and processes of mature and old-growth subtropical forests in China.

    Directory of Open Access Journals (Sweden)

    Enqing Hou

    Full Text Available Nitrogen (N is considered the dominant limiting nutrient in temperate regions, while phosphorus (P limitation frequently occurs in tropical regions, but in subtropical regions nutrient limitation is poorly understood. In this study, we investigated N and P contents and N:P ratios of foliage, forest floors, fine roots and mineral soils, and their relationships with community biomass, litterfall C, N and P productions, forest floor turnover rate, and microbial processes in eight mature and old-growth subtropical forests (stand age >80 yr at Dinghushan Biosphere Reserve, China. Average N:P ratios (mass based in foliage, litter (L layer and mixture of fermentation and humus (F/H layer, and fine roots were 28.3, 42.3, 32.0 and 32.7, respectively. These values are higher than the critical N:P ratios for P limitation proposed (16-20 for foliage, ca. 25 for forest floors. The markedly high N:P ratios were mainly attributed to the high N concentrations of these plant materials. Community biomass, litterfall C, N and P productions, forest floor turnover rate and microbial properties were more strongly related to measures of P than N and frequently negatively related to the N:P ratios, suggesting a significant role of P availability in determining ecosystem production and productivity and nutrient cycling at all the study sites except for one prescribed disturbed site where N availability may also be important. We propose that N enrichment is probably a significant driver of the potential P limitation in the study area. Low P parent material may also contribute to the potential P limitation. In general, our results provided strong evidence supporting a significant role for P availability, rather than N availability, in determining ecosystem primary productivity and ecosystem processes in subtropical forests of China.

  6. Successional dynamics drive tropical forest nutrient limitation

    Science.gov (United States)

    Chou, C.; Hedin, L. O. O.

    2017-12-01

    It is increasingly recognized that nutrients such as N and P may significantly constrain the land carbon sink. However, we currently lack a complete understanding of these nutrient cycles in forest ecosystems and how to incorporate them into Earth System Models. We have developed a framework of dynamic forest nutrient limitation, focusing on the role of secondary forest succession and canopy gap disturbances as bottlenecks of high plant nutrient demand and limitation. We used succession biomass data to parameterize a simple ecosystem model and examined the dynamics of nutrient limitation throughout tropical secondary forest succession. Due to the patterns of biomass recovery in secondary tropical forests, we found high nutrient demand from rapid biomass accumulation in the earliest years of succession. Depending on previous land use scenarios, soil nutrient availability may also be low in this time period. Coupled together, this is evidence that there may be high biomass nutrient limitation early in succession, which is partially met by abundant symbiotic nitrogen fixation from certain tree species. We predict a switch from nitrogen limitation in early succession to one of three conditions: (i) phosphorus only, (ii) phosphorus plus nitrogen, or (iii) phosphorus, nitrogen, plus light co-limitation. We will discuss the mechanisms that govern the exact trajectory of limitation as forests build biomass. In addition, we used our model to explore scenarios of tropical secondary forest impermanence and the impacts of these dynamics on ecosystem nutrient limitation. We found that secondary forest impermanence exacerbates nutrient limitation and the need for nitrogen fixation early in succession. Together, these results indicate that biomass recovery dynamics early in succession as well as their connection to nutrient demand and limitation are fundamental for understanding and modeling nutrient limitation of the tropical forest carbon sink.

  7. Monitoring of nutrient limitation in growing E. coli: a mathematical model of a ppGpp-based biosensor.

    Science.gov (United States)

    Pokhilko, Alexandra

    2017-11-21

    E. coli can be used as bacterial cell factories for production of biofuels and other useful compounds. The efficient production of the desired products requires careful monitoring of growth conditions and the optimization of metabolic fluxes. To avoid nutrient depletion and maximize product yields we suggest using a natural mechanism for sensing nutrient limitation, related to biosynthesis of an intracellular messenger - guanosine tetraphosphate (ppGpp). We propose a design for a biosensor, which monitors changes in the intracellular concentration of ppGpp by coupling it to a fluorescent output. We used mathematical modelling to analyse the intracellular dynamics of ppGpp, its fluorescent reporter, and cell growth in normal and fatty acid-producing E. coli lines. The model integrates existing mechanisms of ppGpp regulation and predicts the biosensor response to changes in nutrient state. In particular, the model predicts that excessive stimulation of fatty acid production depletes fatty acid intermediates, downregulates growth and increases the levels of ppGpp-related fluorescence. Our analysis demonstrates that the ppGpp sensor can be used for early detection of nutrient limitation during cell growth and for testing productivity of engineered lines.

  8. Unlocking Ft: Modeling thermodynamic controls and isotope fractionation factors in nutrient limited environments

    Science.gov (United States)

    Druhan, J. L.; Giannetta, M.; Sanford, R. A.

    2017-12-01

    , resulting in model behavior which is, in effect, a microbial redox analog to the variable observed fractionation factor resulting from a transition state theory rate law as derived by DePaolo (2011).

  9. Nutrient limitation reduces land carbon uptake in simulations with a model of combined carbon, nitrogen and phosphorus cycling

    Directory of Open Access Journals (Sweden)

    D. S. Goll

    2012-09-01

    Full Text Available Terrestrial carbon (C cycle models applied for climate projections simulate a strong increase in net primary productivity (NPP due to elevated atmospheric CO2 concentration during the 21st century. These models usually neglect the limited availability of nitrogen (N and phosphorus (P, nutrients that commonly limit plant growth and soil carbon turnover. To investigate how the projected C sequestration is altered when stoichiometric constraints on C cycling are considered, we incorporated a P cycle into the land surface model JSBACH (Jena Scheme for Biosphere–Atmosphere Coupling in Hamburg, which already includes representations of coupled C and N cycles.

    The model reveals a distinct geographic pattern of P and N limitation. Under the SRES (Special Report on Emissions Scenarios A1B scenario, the accumulated land C uptake between 1860 and 2100 is 13% (particularly at high latitudes and 16% (particularly at low latitudes lower in simulations with N and P cycling, respectively, than in simulations without nutrient cycles. The combined effect of both nutrients reduces land C uptake by 25% compared to simulations without N or P cycling. Nutrient limitation in general may be biased by the model simplicity, but the ranking of limitations is robust against the parameterization and the inflexibility of stoichiometry. After 2100, increased temperature and high CO2 concentration cause a shift from N to P limitation at high latitudes, while nutrient limitation in the tropics declines. The increase in P limitation at high-latitudes is induced by a strong increase in NPP and the low P sorption capacity of soils, while a decline in tropical NPP due to high autotrophic respiration rates alleviates N and P limitations. The quantification of P limitation remains challenging. The poorly constrained processes of soil P sorption and biochemical mineralization are identified as the main uncertainties in the strength of P limitation

  10. Internal cycling, not external loading, decides the nutrient limitation in eutrophic lake: A dynamic model with temporal Bayesian hierarchical inference.

    Science.gov (United States)

    Wu, Zhen; Liu, Yong; Liang, Zhongyao; Wu, Sifeng; Guo, Huaicheng

    2017-06-01

    Lake eutrophication is associated with excessive anthropogenic nutrients (mainly nitrogen (N) and phosphorus (P)) and unobserved internal nutrient cycling. Despite the advances in understanding the role of external loadings, the contribution of internal nutrient cycling is still an open question. A dynamic mass-balance model was developed to simulate and measure the contributions of internal cycling and external loading. It was based on the temporal Bayesian Hierarchical Framework (BHM), where we explored the seasonal patterns in the dynamics of nutrient cycling processes and the limitation of N and P on phytoplankton growth in hyper-eutrophic Lake Dianchi, China. The dynamic patterns of the five state variables (Chla, TP, ammonia, nitrate and organic N) were simulated based on the model. Five parameters (algae growth rate, sediment exchange rate of N and P, nitrification rate and denitrification rate) were estimated based on BHM. The model provided a good fit to observations. Our model results highlighted the role of internal cycling of N and P in Lake Dianchi. The internal cycling processes contributed more than external loading to the N and P changes in the water column. Further insights into the nutrient limitation analysis indicated that the sediment exchange of P determined the P limitation. Allowing for the contribution of denitrification to N removal, N was the more limiting nutrient in most of the time, however, P was the more important nutrient for eutrophication management. For Lake Dianchi, it would not be possible to recover solely by reducing the external watershed nutrient load; the mechanisms of internal cycling should also be considered as an approach to inhibit the release of sediments and to enhance denitrification. Copyright © 2017 Elsevier Ltd. All rights reserved.

  11. Plant ecosystem responses to rising atmospheric CO2: applying a "two-timing" approach to assess alternative hypotheses for mechanisms of nutrient limitation

    Science.gov (United States)

    Medlyn, B.; Jiang, M.; Zaehle, S.

    2017-12-01

    There is now ample experimental evidence that the response of terrestrial vegetation to rising atmospheric CO2 concentration is modified by soil nutrient availability. How to represent nutrient cycling processes is thus a key consideration for vegetation models. We have previously used model intercomparison to demonstrate that models incorporating different assumptions predict very different responses at Free-Air CO2 Enrichment experiments. Careful examination of model outputs has provided some insight into the reasons for the different model outcomes, but it is difficult to attribute outcomes to specific assumptions. Here we investigate the impact of individual assumptions in a generic plant carbon-nutrient cycling model. The G'DAY (Generic Decomposition And Yield) model is modified to incorporate alternative hypotheses for nutrient cycling. We analyse the impact of these assumptions in the model using a simple analytical approach known as "two-timing". This analysis identifies the quasi-equilibrium behaviour of the model at the time scales of the component pools. The analysis provides a useful mathematical framework for probing model behaviour and identifying the most critical assumptions for experimental study.

  12. Nutrient Limitation in Central Red Sea Mangroves

    KAUST Repository

    Almahasheer, Hanan

    2016-12-24

    As coastal plants that can survive in salt water, mangroves play an essential role in large marine ecosystems (LMEs). The Red Sea, where the growth of mangroves is stunted, is one of the least studied LMEs in the world. Mangroves along the Central Red Sea have characteristic heights of ~2 m, suggesting nutrient limitation. We assessed the nutrient status of mangrove stands in the Central Red Sea and conducted a fertilization experiment (N, P and Fe and various combinations thereof) on 4-week-old seedlings of Avicennia marina to identify limiting nutrients and stoichiometric effects. We measured height, number of leaves, number of nodes and root development at different time periods as well as the leaf content of C, N, P, Fe, and Chl a in the experimental seedlings. Height, number of nodes and number of leaves differed significantly among treatments. Iron treatment resulted in significantly taller plants compared with other nutrients, demonstrating that iron is the primary limiting nutrient in the tested mangrove population and confirming Liebig\\'s law of the minimum: iron addition alone yielded results comparable to those using complete fertilizer. This result is consistent with the biogenic nature of the sediments in the Red Sea, which are dominated by carbonates, and the lack of riverine sources of iron.

  13. Nutrient Limitation in Central Red Sea Mangroves

    KAUST Repository

    Almahasheer, Hanan; Duarte, Carlos M.; Irigoien, Xabier

    2016-01-01

    Red Sea have characteristic heights of ~2 m, suggesting nutrient limitation. We assessed the nutrient status of mangrove stands in the Central Red Sea and conducted a fertilization experiment (N, P and Fe and various combinations thereof) on 4-week

  14. Detecting terrestrial nutrient limitation: a global meta-analysis of foliar nutrient concentrations after fertilization

    Directory of Open Access Journals (Sweden)

    Rebecca eOstertag

    2016-03-01

    Full Text Available Examining foliar nutrient concentrations after fertilization provides an alternative method for detecting nutrient limitation of ecosystems, which is logistically simpler to measure than biomass change. We present a meta-analysis of response ratios of foliar nitrogen and phosphorus (RRN, RRP after addition of fertilizer of nitrogen (N, phosphorus (P, or the two elements in combination, in relation to climate, ecosystem type, life form, family, and methodological factors. Results support other meta-analyses using biomass, and demonstrate there is strong evidence for nutrient limitation in natural communities. However, because N fertilization experiments greatly outnumber P fertilization trials, it is difficult to discern the absolute importance of N vs. P vs. co-limitation across ecosystems. Despite these caveats, it is striking that results did not follow conventional wisdom that temperate ecosystems are N-limited and tropical ones are P-limited. In addition, the use of ratios of N-to-P rather than response ratios also are a useful index of nutrient limitation, but due to large overlap in values, there are unlikely to be universal cutoff values for delimiting N vs. P limitation. Differences in RRN and RRP were most significant across ecosystem types, plant families, life forms, and between competitive environments, but not across climatic variables.

  15. Habitat connectivity and ecosystem productivity: implications from a simple model.

    Science.gov (United States)

    Cloern, James E

    2007-01-01

    The import of resources (food, nutrients) sustains biological production and food webs in resource-limited habitats. Resource export from donor habitats subsidizes production in recipient habitats, but the ecosystem-scale consequences of resource translocation are generally unknown. Here, I use a nutrient-phytoplankton-zooplankton model to show how dispersive connectivity between a shallow autotrophic habitat and a deep heterotrophic pelagic habitat can amplify overall system production in metazoan food webs. This result derives from the finite capacity of suspension feeders to capture and assimilate food particles: excess primary production in closed autotrophic habitats cannot be assimilated by consumers; however, if excess phytoplankton production is exported to food-limited heterotrophic habitats, it can be assimilated by zooplankton to support additional secondary production. Transport of regenerated nutrients from heterotrophic to autotrophic habitats sustains higher system primary production. These simulation results imply that the ecosystem-scale efficiency of nutrient transformation into metazoan biomass can be constrained by the rate of resource exchange across habitats and that it is optimized when the transport rate matches the growth rate of primary producers. Slower transport (i.e., reduced connectivity) leads to nutrient limitation of primary production in autotrophic habitats and food limitation of secondary production in heterotrophic habitats. Habitat fragmentation can therefore impose energetic constraints on the carrying capacity of aquatic ecosystems. The outcomes of ecosystem restoration through habitat creation will be determined by both functions provided by newly created aquatic habitats and the rates of hydraulic connectivity between them.

  16. Cycling indices for ecosystem models

    International Nuclear Information System (INIS)

    Carney, J.H.; Gardner, R.H.; Mankin, J.B.; DeAngelis, D.L.

    1979-01-01

    The study of ecosystems is aided by representing structural and functional groups of organisms or processes as discrete components. A complex compartment model will explicitly map pathways from one compartment to another and specify transfer rates. This quantitative description allows insight into the dynamics of flow of nutrients, toxic chemicals, radionuclides, or energy. Three new indices that calculate compartment-specific probabilities of occurrence and recycling and illustrate the problem of applying these indices to ecosystem models are presented

  17. Adaptation of Bacillus subtilis carbon core metabolism to simultaneous nutrient limitation and osmotic challenge : a multi-omics perspective

    NARCIS (Netherlands)

    Kohlstedt, Michael; Sappa, Praveen K; Meyer, Hanna; Maaß, Sandra; Zaprasis, Adrienne; Hoffmann, Tamara; Becker, Judith; Steil, Leif; Hecker, Michael; van Dijl, Jan Maarten; Lalk, Michael; Mäder, Ulrike; Stülke, Jörg; Bremer, Erhard; Völker, Uwe; Wittmann, Christoph

    The Gram-positive bacterium Bacillus subtilis encounters nutrient limitations and osmotic stress in its natural soil ecosystem. To ensure survival and sustain growth, highly integrated adaptive responses are required. Here, we investigated the system-wide response of B.subtilis to different,

  18. Adventures in holistic ecosystem modelling: the cumberland basin ecosystem model

    Science.gov (United States)

    Gordon, D. C.; Keizer, P. D.; Daborn, G. R.; Schwinghamer, P.; Silvert, W. L.

    A holistic ecosystem model has been developed for the Cumberland Basin, a turbid macrotidal estuary at the head of Canada's Bay of Fundy. The model was constructed as a group exercise involving several dozen scientists. Philosophy of approach and methods were patterned after the BOEDE Ems-Dollard modelling project. The model is one-dimensional, has 3 compartments and 3 boundaries, and is composed of 3 separate submodels (physical, pelagic and benthic). The 28 biological state variables cover the complete estuarine ecosystem and represent broad functional groups of organisms based on trophic relationships. Although still under development and not yet validated, the model has been verified and has reached the stage where most state variables provide reasonable output. The modelling process has stimulated interdisciplinary discussion, identified important data gaps and produced a quantitative tool which can be used to examine ecological hypotheses and determine critical environmental processes. As a result, Canadian scientists have a much better understanding of the Cumberland Basin ecosystem and are better able to provide competent advice on environmental management.

  19. Investment in secreted enzymes during nutrient-limited growth is utility dependent.

    Science.gov (United States)

    Cezairliyan, Brent; Ausubel, Frederick M

    2017-09-12

    Pathogenic bacteria secrete toxins and degradative enzymes that facilitate their growth by liberating nutrients from the environment. To understand bacterial growth under nutrient-limited conditions, we studied resource allocation between cellular and secreted components by the pathogenic bacterium Pseudomonas aeruginosa during growth on a protein substrate that requires extracellular digestion by secreted proteases. We identified a quantitative relationship between the rate of increase of cellular biomass under nutrient-limiting growth conditions and the rate of increase in investment in secreted proteases. Production of secreted proteases is stimulated by secreted signals that convey information about the utility of secreted proteins during nutrient-limited growth. Growth modeling using this relationship recapitulated the observed kinetics of bacterial growth on a protein substrate. The proposed regulatory strategy suggests a rationale for quorum-sensing-dependent stimulation of the production of secreted enzymes whereby investment in secreted enzymes occurs in proportion to the utility they confer. Our model provides a framework that can be applied toward understanding bacterial growth in many environments where growth rate is limited by the availability of nutrients.

  20. Independence of nutrient limitation and carbon dioxide impacts on the Southern Ocean coccolithophore Emiliania huxleyi.

    Science.gov (United States)

    Müller, Marius N; Trull, Thomas W; Hallegraeff, Gustaaf M

    2017-08-01

    Future oceanic conditions induced by anthropogenic greenhouse gas emissions include warming, acidification and reduced nutrient supply due to increased stratification. Some parts of the Southern Ocean are expected to show rapid changes, especially for carbonate mineral saturation. Here we compare the physiological response of the model coccolithophore Emiliania huxleyi (strain EHSO 5.14, originating from 50 o S, 149 o E) with pH/CO 2 gradients (mimicking ocean acidification ranging from 1 to 4 × current pCO 2 levels) under nutrient-limited (nitrogen and phosphorus) and -replete conditions. Both nutrient limitations decreased per cell photosynthesis (particulate organic carbon (POC) production) and calcification (particulate inorganic carbon (PIC) production) rates for all pCO 2 levels, with more than 50% reductions under nitrogen limitation. These impacts, however, became indistinguishable from nutrient-replete conditions when normalized to cell volume. Calcification decreased three-fold and linearly with increasing pCO 2 under all nutrient conditions, and was accompanied by a smaller ~30% nonlinear reduction in POC production, manifested mainly above 3 × current pCO 2 . Our results suggest that normalization to cell volume allows the major impacts of nutrient limitation (changed cell sizes and reduced PIC and POC production rates) to be treated independently of the major impacts of increasing pCO 2 and, additionally, stresses the importance of including cell volume measurements to the toolbox of standard physiological analysis of coccolithophores in field and laboratory studies.

  1. Shifts in lake N: P stoichiometry and nutrient limitation driven by atmospheric nitrogen deposition

    Science.gov (United States)

    Elser, J.J.; Andersen, T.; Baron, Jill S.; Bergstrom, A.-K.; Jansson, M.; Kyle, M.; Nydick, K.R.; Steger, L.; Hessen, D.O.

    2009-01-01

    Human activities have more than doubled the amount of nitrogen (N) circulating in the biosphere. One major pathway of this anthropogenic N input into ecosystems has been increased regional deposition from the atmosphere. Here we show that atmospheric N deposition increased the stoichiometric ratio of N and phosphorus (P) in lakes in Norway, Sweden, and Colorado, United States, and, as a result, patterns of ecological nutrient limitation were shifted. Under low N deposition, phytoplankton growth is generally N-limited; however, in high-N deposition lakes, phytoplankton growth is consistently P-limited. Continued anthropogenic amplification of the global N cycle will further alter ecological processes, such as biogeochemical cycling, trophic dynamics, and biological diversity, in the world's lakes, even in lakes far from direct human disturbance.

  2. Assessing Ecosystem Model Performance in Semiarid Systems

    Science.gov (United States)

    Thomas, A.; Dietze, M.; Scott, R. L.; Biederman, J. A.

    2017-12-01

    In ecosystem process modelling, comparing outputs to benchmark datasets observed in the field is an important way to validate models, allowing the modelling community to track model performance over time and compare models at specific sites. Multi-model comparison projects as well as models themselves have largely been focused on temperate forests and similar biomes. Semiarid regions, on the other hand, are underrepresented in land surface and ecosystem modelling efforts, and yet will be disproportionately impacted by disturbances such as climate change due to their sensitivity to changes in the water balance. Benchmarking models at semiarid sites is an important step in assessing and improving models' suitability for predicting the impact of disturbance on semiarid ecosystems. In this study, several ecosystem models were compared at a semiarid grassland in southwestern Arizona using PEcAn, or the Predictive Ecosystem Analyzer, an open-source eco-informatics toolbox ideal for creating the repeatable model workflows necessary for benchmarking. Models included SIPNET, DALEC, JULES, ED2, GDAY, LPJ-GUESS, MAESPA, CLM, CABLE, and FATES. Comparison between model output and benchmarks such as net ecosystem exchange (NEE) tended to produce high root mean square error and low correlation coefficients, reflecting poor simulation of seasonality and the tendency for models to create much higher carbon sources than observed. These results indicate that ecosystem models do not currently adequately represent semiarid ecosystem processes.

  3. A Size-based Ecosystem Model

    DEFF Research Database (Denmark)

    Ravn-Jonsen, Lars

     Ecosystem Management requires models that can link the ecosystem level to the operation level. This link can be created by an ecosystem production model. Because the function of the individual fish in the marine ecosystem, seen in trophic context, is closely related to its size, the model groups...... fish according to size. The model summarises individual predation events into ecosystem level properties, and thereby uses the law of conversation of mass as a framework. This paper provides the background, the conceptual model, basic assumptions, integration of fishing activities, mathematical...... the predator--prey interaction, (ii) mass balance in the predator--prey allocation, and (iii) mortality and somatic growth as a consequence of the predator--prey allocation. By incorporating additional assumptions, the model can be extended to other dimensions of the ecosystem, for example, space or species...

  4. Ensemble ecosystem modeling for predicting ecosystem response to predator reintroduction.

    Science.gov (United States)

    Baker, Christopher M; Gordon, Ascelin; Bode, Michael

    2017-04-01

    Introducing a new or extirpated species to an ecosystem is risky, and managers need quantitative methods that can predict the consequences for the recipient ecosystem. Proponents of keystone predator reintroductions commonly argue that the presence of the predator will restore ecosystem function, but this has not always been the case, and mathematical modeling has an important role to play in predicting how reintroductions will likely play out. We devised an ensemble modeling method that integrates species interaction networks and dynamic community simulations and used it to describe the range of plausible consequences of 2 keystone-predator reintroductions: wolves (Canis lupus) to Yellowstone National Park and dingoes (Canis dingo) to a national park in Australia. Although previous methods for predicting ecosystem responses to such interventions focused on predicting changes around a given equilibrium, we used Lotka-Volterra equations to predict changing abundances through time. We applied our method to interaction networks for wolves in Yellowstone National Park and for dingoes in Australia. Our model replicated the observed dynamics in Yellowstone National Park and produced a larger range of potential outcomes for the dingo network. However, we also found that changes in small vertebrates or invertebrates gave a good indication about the potential future state of the system. Our method allowed us to predict when the systems were far from equilibrium. Our results showed that the method can also be used to predict which species may increase or decrease following a reintroduction and can identify species that are important to monitor (i.e., species whose changes in abundance give extra insight into broad changes in the system). Ensemble ecosystem modeling can also be applied to assess the ecosystem-wide implications of other types of interventions including assisted migration, biocontrol, and invasive species eradication. © 2016 Society for Conservation Biology.

  5. Modeling the Personal Health Ecosystem.

    Science.gov (United States)

    Blobel, Bernd; Brochhausen, Mathias; Ruotsalainen, Pekka

    2018-01-01

    Complex ecosystems like the pHealth one combine different domains represented by a huge variety of different actors (human beings, organizations, devices, applications, components) belonging to different policy domains, coming from different disciplines, deploying different methodologies, terminologies, and ontologies, offering different levels of knowledge, skills, and experiences, acting in different scenarios and accommodating different business cases to meet the intended business objectives. For correctly modeling such systems, a system-oriented, architecture-centric, ontology-based, policy-driven approach is inevitable, thereby following established Good Modeling Best Practices. However, most of the existing standards, specifications and tools for describing, representing, implementing and managing health (information) systems reflect the advancement of information and communication technology (ICT) represented by different evolutionary levels of data modeling. The paper presents a methodology for integrating, adopting and advancing models, standards, specifications as well as implemented systems and components on the way towards the aforementioned ultimate approach, so meeting the challenge we face when transforming health systems towards ubiquitous, personalized, predictive, preventive, participative, and cognitive health and social care.

  6. Puako Ecosystem Model Output Data

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Coral reefs provide a wide range of ecosystem services that are valued differently by different users. Managers are challenged to comprehensively address the full...

  7. Ecosystem Based Business Model of Smart Grid

    OpenAIRE

    Lundgaard, Morten Raahauge; Ma, Zheng; Jørgensen, Bo Nørregaard

    2015-01-01

    This paper tries to investigate the ecosystem based business model in a smart grid infrastructure and the potential of value capture in the highly complex macro infrastructure such as smart grid. This paper proposes an alternative perspective to study the smart grid business ecosystem to support the infrastructural challenges, such as the interoperability of business components for smart grid. So far little research has explored the business ecosystem in the smart grid concept. The study on t...

  8. Ecosystem Based Business Model of Smart Grid

    DEFF Research Database (Denmark)

    Lundgaard, Morten Raahauge; Ma, Zheng; Jørgensen, Bo Nørregaard

    2015-01-01

    This paper tries to investigate the ecosystem based business model in a smart grid infrastructure and the potential of value capture in the highly complex macro infrastructure such as smart grid. This paper proposes an alternative perspective to study the smart grid business ecosystem to support...... the infrastructural challenges, such as the interoperability of business components for smart grid. So far little research has explored the business ecosystem in the smart grid concept. The study on the smart grid with the theory of business ecosystem may open opportunities to understand market catalysts. This study...... contributes an understanding of business ecosystem applicable for smart grid. Smart grid infrastructure is an intricate business ecosystem, which have several intentions to deliver the value proposition and what it should be. The findings help to identify and capture value from markets....

  9. Scientists' Needs in Software Ecosystem Modeling

    NARCIS (Netherlands)

    Jansen, Slinger; Handoyo, Eko; Alves, C.

    2015-01-01

    Currently the landscape of software ecosystem modelling methods and languages is like Babel after the fall of the tower: there are many methods and languages available and interchanging data between researchers and organizations that actively govern their ecosystem, is practically impossible. The

  10. Parallel Computing for Terrestrial Ecosystem Carbon Modeling

    International Nuclear Information System (INIS)

    Wang, Dali; Post, Wilfred M.; Ricciuto, Daniel M.; Berry, Michael

    2011-01-01

    Terrestrial ecosystems are a primary component of research on global environmental change. Observational and modeling research on terrestrial ecosystems at the global scale, however, has lagged behind their counterparts for oceanic and atmospheric systems, largely because the unique challenges associated with the tremendous diversity and complexity of terrestrial ecosystems. There are 8 major types of terrestrial ecosystem: tropical rain forest, savannas, deserts, temperate grassland, deciduous forest, coniferous forest, tundra, and chaparral. The carbon cycle is an important mechanism in the coupling of terrestrial ecosystems with climate through biological fluxes of CO 2 . The influence of terrestrial ecosystems on atmospheric CO 2 can be modeled via several means at different timescales. Important processes include plant dynamics, change in land use, as well as ecosystem biogeography. Over the past several decades, many terrestrial ecosystem models (see the 'Model developments' section) have been developed to understand the interactions between terrestrial carbon storage and CO 2 concentration in the atmosphere, as well as the consequences of these interactions. Early TECMs generally adapted simple box-flow exchange models, in which photosynthetic CO 2 uptake and respiratory CO 2 release are simulated in an empirical manner with a small number of vegetation and soil carbon pools. Demands on kinds and amount of information required from global TECMs have grown. Recently, along with the rapid development of parallel computing, spatially explicit TECMs with detailed process based representations of carbon dynamics become attractive, because those models can readily incorporate a variety of additional ecosystem processes (such as dispersal, establishment, growth, mortality etc.) and environmental factors (such as landscape position, pest populations, disturbances, resource manipulations, etc.), and provide information to frame policy options for climate change

  11. Ecosystem Model Skill Assessment. Yes We Can!

    Science.gov (United States)

    Olsen, Erik; Fay, Gavin; Gaichas, Sarah; Gamble, Robert; Lucey, Sean; Link, Jason S

    2016-01-01

    Accelerated changes to global ecosystems call for holistic and integrated analyses of past, present and future states under various pressures to adequately understand current and projected future system states. Ecosystem models can inform management of human activities in a complex and changing environment, but are these models reliable? Ensuring that models are reliable for addressing management questions requires evaluating their skill in representing real-world processes and dynamics. Skill has been evaluated for just a limited set of some biophysical models. A range of skill assessment methods have been reviewed but skill assessment of full marine ecosystem models has not yet been attempted. We assessed the skill of the Northeast U.S. (NEUS) Atlantis marine ecosystem model by comparing 10-year model forecasts with observed data. Model forecast performance was compared to that obtained from a 40-year hindcast. Multiple metrics (average absolute error, root mean squared error, modeling efficiency, and Spearman rank correlation), and a suite of time-series (species biomass, fisheries landings, and ecosystem indicators) were used to adequately measure model skill. Overall, the NEUS model performed above average and thus better than expected for the key species that had been the focus of the model tuning. Model forecast skill was comparable to the hindcast skill, showing that model performance does not degenerate in a 10-year forecast mode, an important characteristic for an end-to-end ecosystem model to be useful for strategic management purposes. We identify best-practice approaches for end-to-end ecosystem model skill assessment that would improve both operational use of other ecosystem models and future model development. We show that it is possible to not only assess the skill of a complicated marine ecosystem model, but that it is necessary do so to instill confidence in model results and encourage their use for strategic management. Our methods are applicable

  12. Trialogue model for ecosystem governance.

    CSIR Research Space (South Africa)

    Hattingh, J

    2007-01-01

    Full Text Available form and timescale to ensure good governance. In essence, good governance promotes democratic management of ecosystems and, by inference, prudentwater resourcemanagement. Consequently, it is likely that the type of governance that occurs most often... that, unless the imperative for civic science to support democratic governance is institutionalised through policy and strategy, it is unlikely that there will be sufficient human and financial investment in civic science as a means to promote...

  13. Net nitrogen mineralization in natural ecosystems across the conterminous US

    Science.gov (United States)

    LeeAnna Y. Chapman; Steven G. McNulty; Ge Sun; Yang Zhang

    2013-01-01

    Nitrogen is the primary nutrient limiting ecosystem productivity over most of the US. Although soil nitrogen content is important, knowledge about its spatial extent at the continental scale is limited. The objective of this study was to estimate net nitrogen mineralization for the conterminous US (CONUS) using an empirical modeling approach by scaling up site level...

  14. Long-term seasonal nutrient limiting patterns at Meiliang Bay in a large, shallow and subtropical Lake Taihu, China

    Directory of Open Access Journals (Sweden)

    Rui Ye

    2015-04-01

    Full Text Available Lake Taihu has undergone severe eutrophication in the past three decades, and harmful cyanobacteria blooms occur nearly every year in Meiliang Bay at the north end of the lake. To elucidate the potential relationship between seasonal nutrient limitation and phytoplankton proliferation, a 20-year (1991-2012 time series of nutrient limitation in Meiliang Bay was analyzed for deviations between trophic state index (TSI parameters. Results showed that patterns of nutrient limitation in Meiliang Bay were distinctly seasonal, where phytoplankton growth was generally phosphorus (P-limited in winter and spring, but nitrogen (N-limited mainly occurred in summer and fall. This general pattern, however, shifted into N limitation across the four seasons during the mid-1990s because a rapid increase in industrialization led to a significant rise in the input of N and P from inflowing tributaries. The initial patterns were restored by environmental regulation in the end of 1990s, including the Zero Actions plan. Using routine monitoring data, a generalised additive model (GAM with time and deviations between trophic state indexes for nitrogen and phosphorus (TSIN-TSIP as explanatory variables was used to explore which nutrient was responsible for limitation of phytoplankton chlorophyll-a (Chl-a in different seasons. Surprisingly, the model revealed a weak N limitation (TSIN-TSIP = -10 corresponded to peak values of Chl-a in summer-autumn season, which is probably because the phytoplankton community is co-limited by N & P during the period. The shift of nutrition limitation during winter-spring would partially explain high values of Chl-a throughout 1996. This study suggests that seasonal patterns of nutrient limitation must be considered to develop effective management measures to control cyanobacterial blooms.

  15. Ecosystem function in complex mountain terrain: Combining models and long-term observations to advance process-based understanding

    Science.gov (United States)

    Wieder, William R.; Knowles, John F.; Blanken, Peter D.; Swenson, Sean C.; Suding, Katharine N.

    2017-04-01

    Abiotic factors structure plant community composition and ecosystem function across many different spatial scales. Often, such variation is considered at regional or global scales, but here we ask whether ecosystem-scale simulations can be used to better understand landscape-level variation that might be particularly important in complex terrain, such as high-elevation mountains. We performed ecosystem-scale simulations by using the Community Land Model (CLM) version 4.5 to better understand how the increased length of growing seasons may impact carbon, water, and energy fluxes in an alpine tundra landscape. The model was forced with meteorological data and validated with observations from the Niwot Ridge Long Term Ecological Research Program site. Our results demonstrate that CLM is capable of reproducing the observed carbon, water, and energy fluxes for discrete vegetation patches across this heterogeneous ecosystem. We subsequently accelerated snowmelt and increased spring and summer air temperatures in order to simulate potential effects of climate change in this region. We found that vegetation communities that were characterized by different snow accumulation dynamics showed divergent biogeochemical responses to a longer growing season. Contrary to expectations, wet meadow ecosystems showed the strongest decreases in plant productivity under extended summer scenarios because of disruptions in hydrologic connectivity. These findings illustrate how Earth system models such as CLM can be used to generate testable hypotheses about the shifting nature of energy, water, and nutrient limitations across space and through time in heterogeneous landscapes; these hypotheses may ultimately guide further experimental work and model development.

  16. Modeling soil moisture memory in savanna ecosystems

    Science.gov (United States)

    Gou, S.; Miller, G. R.

    2011-12-01

    Antecedent soil conditions create an ecosystem's "memory" of past rainfall events. Such soil moisture memory effects may be observed over a range of timescales, from daily to yearly, and lead to feedbacks between hydrological and ecosystem processes. In this study, we modeled the soil moisture memory effect on savanna ecosystems in California, Arizona, and Africa, using a system dynamics model created to simulate the ecohydrological processes at the plot-scale. The model was carefully calibrated using soil moisture and evapotranspiration data collected at three study sites. The model was then used to simulate scenarios with various initial soil moisture conditions and antecedent precipitation regimes, in order to study the soil moisture memory effects on the evapotranspiration of understory and overstory species. Based on the model results, soil texture and antecedent precipitation regime impact the redistribution of water within soil layers, potentially causing deeper soil layers to influence the ecosystem for a longer time. Of all the study areas modeled, soil moisture memory of California savanna ecosystem site is replenished and dries out most rapidly. Thus soil moisture memory could not maintain the high rate evapotranspiration for more than a few days without incoming rainfall event. On the contrary, soil moisture memory of Arizona savanna ecosystem site lasts the longest time. The plants with different root depths respond to different memory effects; shallow-rooted species mainly respond to the soil moisture memory in the shallow soil. The growing season of grass is largely depended on the soil moisture memory of the top 25cm soil layer. Grass transpiration is sensitive to the antecedent precipitation events within daily to weekly timescale. Deep-rooted plants have different responses since these species can access to the deeper soil moisture memory with longer time duration Soil moisture memory does not have obvious impacts on the phenology of woody plants

  17. Approaches to modelling hydrology and ecosystem interactions

    Science.gov (United States)

    Silberstein, Richard P.

    2014-05-01

    As the pressures of industry, agriculture and mining on groundwater resources increase there is a burgeoning un-met need to be able to capture these multiple, direct and indirect stresses in a formal framework that will enable better assessment of impact scenarios. While there are many catchment hydrological models and there are some models that represent ecological states and change (e.g. FLAMES, Liedloff and Cook, 2007), these have not been linked in any deterministic or substantive way. Without such coupled eco-hydrological models quantitative assessments of impacts from water use intensification on water dependent ecosystems under changing climate are difficult, if not impossible. The concept would include facility for direct and indirect water related stresses that may develop around mining and well operations, climate stresses, such as rainfall and temperature, biological stresses, such as diseases and invasive species, and competition such as encroachment from other competing land uses. Indirect water impacts could be, for example, a change in groundwater conditions has an impact on stream flow regime, and hence aquatic ecosystems. This paper reviews previous work examining models combining ecology and hydrology with a view to developing a conceptual framework linking a biophysically defensable model that combines ecosystem function with hydrology. The objective is to develop a model capable of representing the cumulative impact of multiple stresses on water resources and associated ecosystem function.

  18. Improving Marine Ecosystem Models with Biochemical Tracers

    Science.gov (United States)

    Pethybridge, Heidi R.; Choy, C. Anela; Polovina, Jeffrey J.; Fulton, Elizabeth A.

    2018-01-01

    Empirical data on food web dynamics and predator-prey interactions underpin ecosystem models, which are increasingly used to support strategic management of marine resources. These data have traditionally derived from stomach content analysis, but new and complementary forms of ecological data are increasingly available from biochemical tracer techniques. Extensive opportunities exist to improve the empirical robustness of ecosystem models through the incorporation of biochemical tracer data and derived indices, an area that is rapidly expanding because of advances in analytical developments and sophisticated statistical techniques. Here, we explore the trophic information required by ecosystem model frameworks (species, individual, and size based) and match them to the most commonly used biochemical tracers (bulk tissue and compound-specific stable isotopes, fatty acids, and trace elements). Key quantitative parameters derived from biochemical tracers include estimates of diet composition, niche width, and trophic position. Biochemical tracers also provide powerful insight into the spatial and temporal variability of food web structure and the characterization of dominant basal and microbial food web groups. A major challenge in incorporating biochemical tracer data into ecosystem models is scale and data type mismatches, which can be overcome with greater knowledge exchange and numerical approaches that transform, integrate, and visualize data.

  19. Modelling radiocesium fluxes in forest ecosystems

    International Nuclear Information System (INIS)

    Shaw, G.; Kliashtorin, A.; Mamikhin, S.; Shcheglov, A.; Rafferty, B.; Dvornik, A.; Zhuchenko, T.; Kuchma, N.

    1996-01-01

    Monitoring of radiocesium inventories and fluxes has been carried out in forest ecosystems in Ukraine, Belarus and Ireland to determine distributions and rates of migration. This information has been used to construct and calibrate mathematical models which are being used to predict the likely longevity of contamination of forests and forest products such as timber following the Chernobyl accident

  20. Physiological strategies of co-occurring oaks in a water- and nutrient-limited ecosystem

    Science.gov (United States)

    Heidi Renninger; Nicholas Carlo; Kenneth L. Clark; Karina V.R. Schafer

    2014-01-01

    Oak species are well suited to water-limited conditions by either avoiding water stress through deep rooting or tolerating water stress through tight stomatal control. In co-occurring species where resources are limited, species may either partition resources in space and/or time or exhibit differing efficiencies in the use of limited resources. Therefore, this study...

  1. Lessons learned for spatial modelling of ecosystem services in support of ecosystem accounting

    NARCIS (Netherlands)

    Schroter, M.; Remme, R.P.; Sumarga, E.; Barton, D.N.; Hein, L.G.

    2015-01-01

    Assessment of ecosystem services through spatial modelling plays a key role in ecosystem accounting. Spatial models for ecosystem services try to capture spatial heterogeneity with high accuracy. This endeavour, however, faces several practical constraints. In this article we analyse the trade-offs

  2. Maximum entropy models of ecosystem functioning

    International Nuclear Information System (INIS)

    Bertram, Jason

    2014-01-01

    Using organism-level traits to deduce community-level relationships is a fundamental problem in theoretical ecology. This problem parallels the physical one of using particle properties to deduce macroscopic thermodynamic laws, which was successfully achieved with the development of statistical physics. Drawing on this parallel, theoretical ecologists from Lotka onwards have attempted to construct statistical mechanistic theories of ecosystem functioning. Jaynes’ broader interpretation of statistical mechanics, which hinges on the entropy maximisation algorithm (MaxEnt), is of central importance here because the classical foundations of statistical physics do not have clear ecological analogues (e.g. phase space, dynamical invariants). However, models based on the information theoretic interpretation of MaxEnt are difficult to interpret ecologically. Here I give a broad discussion of statistical mechanical models of ecosystem functioning and the application of MaxEnt in these models. Emphasising the sample frequency interpretation of MaxEnt, I show that MaxEnt can be used to construct models of ecosystem functioning which are statistical mechanical in the traditional sense using a savanna plant ecology model as an example

  3. Maximum entropy models of ecosystem functioning

    Energy Technology Data Exchange (ETDEWEB)

    Bertram, Jason, E-mail: jason.bertram@anu.edu.au [Research School of Biology, The Australian National University, Canberra ACT 0200 (Australia)

    2014-12-05

    Using organism-level traits to deduce community-level relationships is a fundamental problem in theoretical ecology. This problem parallels the physical one of using particle properties to deduce macroscopic thermodynamic laws, which was successfully achieved with the development of statistical physics. Drawing on this parallel, theoretical ecologists from Lotka onwards have attempted to construct statistical mechanistic theories of ecosystem functioning. Jaynes’ broader interpretation of statistical mechanics, which hinges on the entropy maximisation algorithm (MaxEnt), is of central importance here because the classical foundations of statistical physics do not have clear ecological analogues (e.g. phase space, dynamical invariants). However, models based on the information theoretic interpretation of MaxEnt are difficult to interpret ecologically. Here I give a broad discussion of statistical mechanical models of ecosystem functioning and the application of MaxEnt in these models. Emphasising the sample frequency interpretation of MaxEnt, I show that MaxEnt can be used to construct models of ecosystem functioning which are statistical mechanical in the traditional sense using a savanna plant ecology model as an example.

  4. Modeling for Ecosystem Services: Challenges and Opportunities

    Science.gov (United States)

    Guswa, A. J.; Brauman, K. A.; Ghile, Y.

    2012-12-01

    Ecosystem services are those values provided to human society by the structure and processes of ecosystems and landscapes. Water-related services include the transformation of precipitation impulses into supplies of water for hydropower, irrigation, and industrial and municipal uses, the retention and removal of applied nutrients and pollutants, flood-damage mitigation, recreation, and the provision of cultural and aesthetic values. Incorporation of changes to the value of these services in land-use planning and decision making requires identification of the relevant services, engagement of stakeholders, knowledge of how land-use changes impact water quality, quantity, and timing, and mechanisms for putting value on the hydrologic and biogeochemical changes. We present three examples that highlight the characteristics, challenges, and opportunities associated with prototypical decisions that incorporate ecosystem services values: scenario analysis, payment for ecosystem services, and optimal spatial planning. Through these examples, we emphasize the challenges of data availability, model resolution and complexity, and attribution of value. We also provide some suggestions for ways forward.

  5. Modeling and Security in Cloud Ecosystems

    Directory of Open Access Journals (Sweden)

    Eduardo B. Fernandez

    2016-04-01

    Full Text Available Clouds do not work in isolation but interact with other clouds and with a variety of systems either developed by the same provider or by external entities with the purpose to interact with them; forming then an ecosystem. A software ecosystem is a collection of software systems that have been developed to coexist and evolve together. The stakeholders of such a system need a variety of models to give them a perspective of the possibilities of the system, to evaluate specific quality attributes, and to extend the system. A powerful representation when building or using software ecosystems is the use of architectural models, which describe the structural aspects of such a system. These models have value for security and compliance, are useful to build new systems, can be used to define service contracts, find where quality factors can be monitored, and to plan further expansion. We have described a cloud ecosystem in the form of a pattern diagram where its components are patterns and reference architectures. A pattern is an encapsulated solution to a recurrent problem. We have recently expanded these models to cover fog systems and containers. Fog Computing is a highly-virtualized platform that provides compute, storage, and networking services between end devices and Cloud Computing Data Centers; a Software Container provides an execution environment for applications sharing a host operating system, binaries, and libraries with other containers. We intend to use this architecture to answer a variety of questions about the security of this system as well as a reference to design interacting combinations of heterogeneous components. We defined a metamodel to relate security concepts which is being expanded.

  6. Intelligent spatial ecosystem modeling using parallel processors

    International Nuclear Information System (INIS)

    Maxwell, T.; Costanza, R.

    1993-01-01

    Spatial modeling of ecosystems is essential if one's modeling goals include developing a relatively realistic description of past behavior and predictions of the impacts of alternative management policies on future ecosystem behavior. Development of these models has been limited in the past by the large amount of input data required and the difficulty of even large mainframe serial computers in dealing with large spatial arrays. These two limitations have begun to erode with the increasing availability of remote sensing data and GIS systems to manipulate it, and the development of parallel computer systems which allow computation of large, complex, spatial arrays. Although many forms of dynamic spatial modeling are highly amenable to parallel processing, the primary focus in this project is on process-based landscape models. These models simulate spatial structure by first compartmentalizing the landscape into some geometric design and then describing flows within compartments and spatial processes between compartments according to location-specific algorithms. The authors are currently building and running parallel spatial models at the regional scale for the Patuxent River region in Maryland, the Everglades in Florida, and Barataria Basin in Louisiana. The authors are also planning a project to construct a series of spatially explicit linked ecological and economic simulation models aimed at assessing the long-term potential impacts of global climate change

  7. Proving the ecosystem value through hydrological modelling

    International Nuclear Information System (INIS)

    Dorner, W; Spachinger, K; Metzka, R; Porter, M

    2008-01-01

    Ecosystems provide valuable functions. Also natural floodplains and river structures offer different types of ecosystem functions such as habitat function, recreational area and natural detention. From an economic stand point the loss (or rehabilitation) of these natural systems and their provided natural services can be valued as a damage (or benefit). Consequently these natural goods and services must be economically valued in project assessments e.g. cost-benefit-analysis or cost comparison. Especially in smaller catchments and river systems exists significant evidence that natural flood detention reduces flood risk and contributes to flood protection. Several research projects evaluated the mitigating effect of land use, river training and the loss of natural flood plains on development, peak and volume of floods. The presented project analysis the hypothesis that ignoring natural detention and hydrological ecosystem services could result in economically inefficient solutions for flood protection and mitigation. In test areas, subcatchments of the Danube in Germany, a combination of hydrological and hydrodynamic models with economic evaluation techniques was applied. Different forms of land use, river structure and flood protection measures were assed and compared from a hydrological and economic point of view. A hydrodynamic model was used to simulate flows to assess the extent of flood affected areas and damages to buildings and infrastructure as well as to investigate the impacts of levees and river structure on a local scale. These model results provided the basis for an economic assessment. Different economic valuation techniques, such as flood damage functions, cost comparison method and substation-approach were used to compare the outcomes of different hydrological scenarios from an economic point of view and value the ecosystem service. The results give significant evidence that natural detention must be evaluated as part of flood mitigation projects

  8. Modeling hurricane effects on mangrove ecosystems

    Science.gov (United States)

    Doyle, Thomas W.

    1997-01-01

    Mangrove ecosystems are at their most northern limit along the coastline of Florida and in isolated areas of the gulf coast in Louisiana and Texas. Mangroves are marine-based forests that have adapted to colonize and persist in salty intertidal waters. Three species of mangrove trees are common to the United States, black mangrove (Avicennia germinans), white mangrove (Laguncularia racemosa), and red mangrove (Rhizophora mangle). Mangroves are highly productive ecosystems and provide valuable habitat for fisheries and shorebirds. They are susceptible to lightning and hurricane disturbance, both of which occur frequently in south Florida. Climate change studies predict that, while these storms may not become more frequent, they may become more intense with warming sea temperatures. Sea-level rise alone has the potential for increasing the severity of storm surge, particularly in areas where coastal habitats and barrier shorelines are rapidly deteriorating. Given this possibility, U.S. Geological Survey researchers modeled the impact of hurricanes on south Florida mangrove communities.

  9. Review on the Application of Ecosystem Models in Biodiversity ...

    African Journals Online (AJOL)

    This paper is an exposition with the sole aim of highlighting the relevance of ecosystem models in the analyses of biodiversity. The structure of ecosystem models enables researchers to design and consequently formulate monitoring programs that will be useful to the conservation of biodiversity. Ecosystem theoretical ...

  10. Ecosystem element transport model for Lake Eckarfjaerden

    Energy Technology Data Exchange (ETDEWEB)

    Konovalenko, L.; Bradshaw, C. [The Department of Ecology, Environment and Plant Sciences, Stockholm University (Sweden); Andersson, E.; Kautsky, U. [Swedish Nuclear Fuel and Waste Management Co. - SKB (Sweden)

    2014-07-01

    The ecosystem transport model of elements was developed for Lake Eckarfjaerden located in the Forsmark area in Sweden. Forsmark has currently a low level repository (SFR) and a repository for spent fuel is planned. A large number of data collected during site-investigation program 2002-2009 for planning the repository were available for the creation of the compartment model based on carbon circulation, physical and biological processes (e.g. primary production, consumption, respiration). The model is site-specific in the sense that the food web model is adapted to the actual food web at the site, and most estimates of biomass and metabolic rates for the organisms and meteorological data originate from site data. The functional organism groups of Lake Eckarfjaerden were considered as separate compartments: bacterio-plankton, benthic bacteria, macro-algae, phytoplankton, zooplankton, fish, benthic fauna. Two functional groups of bacteria were taken into account for the reason that they have the highest biomass of all functional groups during the winter, comprising 36% of the total biomass. Effects of ecological parameters, such as bacteria and algae biomass, on redistribution of a hypothetical radionuclide release in the lake were examined. The ecosystem model was used to estimate the environmental transfer of several elements (U, Th, Ra) and their isotopes (U-238, U-234,Th-232, Ra-226) to various aquatic organisms in the lake, using element-specific distribution coefficients for suspended particle and sediment. Results of chemical analyses of the water, sediment and biota were used for model validation. The model gives estimates of concentration factors for fish based on modelling rather on in situ measurement, which reduces the uncertainties for many radionuclides with scarce of data. Document available in abstract form only. (authors)

  11. Analyzing, Modelling, and Designing Software Ecosystems

    DEFF Research Database (Denmark)

    Manikas, Konstantinos

    as the software development and distribution by a set of actors dependent on each other and the ecosystem. We commence on the hypothesis that the establishment of a software ecosystem on the telemedicine services of Denmark would address these issues and investigate how a software ecosystem can foster...... the development, implementation, and use of telemedicine services. We initially expand the theory of software ecosystems by contributing to the definition and understanding of software ecosystems, providing means of analyzing existing and designing new ecosystems, and defining and measuring the qualities...... of software ecosystems. We use these contributions to design a software ecosystem in the telemedicine services of Denmark with (i) a common platform that supports and promotes development from different actors, (ii) high software interaction, (iii) strong social network of actors, (iv) robust business...

  12. Identification of ecosystem parameters by SDE-modelling

    DEFF Research Database (Denmark)

    Stochastic differential equations (SDEs) for ecosystem modelling have attracted increasing attention during recent years. The modelling has mostly been through simulation experiments in order to analyse how system noise propagates through the ordinary differential equation formulation of ecosystem...... models. Estimation of parameters in SDEs is, however, possible by combining Kalman filter techniques and likelihood estimation. By modelling parameters as random walks it is possible to identify linear as well as non-linear interactions between ecosystem components. By formulating a simple linear SDE...

  13. Merging Marine Ecosystem Models and Genomics

    Science.gov (United States)

    Coles, V.; Hood, R. R.; Stukel, M. R.; Moran, M. A.; Paul, J. H.; Satinsky, B.; Zielinski, B.; Yager, P. L.

    2015-12-01

    oceanography. One of the grand challenges of oceanography is to develop model techniques to more effectively incorporate genomic information. As one approach, we developed an ecosystem model whose community is determined by randomly assigning functional genes to build each organism's "DNA". Microbes are assigned a size that sets their baseline environmental responses using allometric response cuves. These responses are modified by the costs and benefits conferred by each gene in an organism's genome. The microbes are embedded in a general circulation model where environmental conditions shape the emergent population. This model is used to explore whether organisms constructed from randomized combinations of metabolic capability alone can self-organize to create realistic oceanic biogeochemical gradients. Realistic community size spectra and chlorophyll-a concentrations emerge in the model. The model is run repeatedly with randomly-generated microbial communities and each time realistic gradients in community size spectra, chlorophyll-a, and forms of nitrogen develop. This supports the hypothesis that the metabolic potential of a community rather than the realized species composition is the primary factor setting vertical and horizontal environmental gradients. Vertical distributions of nitrogen and transcripts for genes involved in nitrification are broadly consistent with observations. Modeled gene and transcript abundance for nitrogen cycling and processing of land-derived organic material match observations along the extreme gradients in the Amazon River plume, and they help to explain the factors controlling observed variability.

  14. Humus and humility in ecosystem model design

    Science.gov (United States)

    Rowe, Ed

    2015-04-01

    Prediction is central to science. Empirical scientists couch their predictions as hypotheses and tend to deal with simple models such as regressions, but are modellers as much as are those who combine mechanistic hypotheses into more complex models. There are two main challenges for both groups: to strive for accurate predictions, and to ensure that the work is relevant to wider society. There is a role for blue-sky research, but the multiple environmental changes that characterise the 21st century place an onus on ecosystem scientists to develop tools for understanding environmental change and planning responses. Authors such as Funtowicz and Ravetz (1990) have argued that this situation represents "post-normal" science and that scientists should see themselves more humbly as actors within a societal process rather than as arbiters of truth. Modellers aim for generality, e.g. to accurately simulate the responses of a variety of ecosystems to several different environmental drivers. More accurate predictions can usually be achieved by including more explanatory factors or mechanisms in a model, even though this often results in a less efficient, less parsimonious model. This drives models towards ever-increasing complexity, and many models grow until they are effectively unusable beyond their development team. An alternative way forward is to focus on developing component models. Technologies for integrating dynamic models emphasise the removal of the model engine (algorithms) from code which handles time-stepping and the user interface. Developing components also requires some humility on the part of modellers, since collaboration will be needed to represent the whole system, and also because the idea that a simple component can or should represent the entire understanding of a scientific discipline is often difficult to accept. Policy-makers and land managers typically have questions different to those posed by scientists working within a specialism, and models

  15. Modelling natural disturbances in forest ecosystems: a review

    OpenAIRE

    Seidl, Rupert; Fernandes, Paulo M.; Fonseca, Teresa F.; Gillet, François; Jönsson, Anna Maria; Merganičová, Katarína; Netherer, Sigrid; Arpaci, Alexander; Bontemps, Jean-Daniel; Bugmann, Harald

    2011-01-01

    Natural disturbances play a key role in ecosystem dynamics and are important factors for sustainable forest ecosystem management. Quantitative models are frequently employed to tackle the complexities associated with disturbance processes. Here we review the wide variety of approaches to modelling natural disturbances in forest ecosystems, addressing the full spectrum of disturbance modelling from single events to integrated disturbance regimes. We applied a general, process-based framework f...

  16. Upscaling key ecosystem functions across the conterminous United States by a water‐centric ecosystem model

    Science.gov (United States)

    Ge Sun; Peter Caldwell; Asko Noormets; Steven G. McNulty; Erika Cohen; al. et.

    2011-01-01

    We developed a water‐centric monthly scale simulation model (WaSSI‐C) by integrating empirical water and carbon flux measurements from the FLUXNET network and an existing water supply and demand accounting model (WaSSI). The WaSSI‐C model was evaluated with basin‐scale evapotranspiration (ET), gross ecosystem productivity (GEP), and net ecosystem exchange (NEE)...

  17. A community-based framework for aquatic ecosystem models

    DEFF Research Database (Denmark)

    Trolle, Didde; Hamilton, D. P.; Hipsey, M. R.

    2012-01-01

    Here, we communicate a point of departure in the development of aquatic ecosystem models, namely a new community-based framework, which supports an enhanced and transparent union between the collective expertise that exists in the communities of traditional ecologists and model developers. Through...... a literature survey, we document the growing importance of numerical aquatic ecosystem models while also noting the difficulties, up until now, of the aquatic scientific community to make significant advances in these models during the past two decades. Through a common forum for aquatic ecosystem modellers we...... aim to (i) advance collaboration within the aquatic ecosystem modelling community, (ii) enable increased use of models for research, policy and ecosystem-based management, (iii) facilitate a collective framework using common (standardised) code to ensure that model development is incremental, (iv...

  18. REMM: The Riparian Ecosystem Management Model

    Energy Technology Data Exchange (ETDEWEB)

    Lowrance, R.; Altier, L.S.; Williams, R.G.; Inamdar, S.P.; Sheridan, J.M.; Bosch, D.D.; Hubbard, R.K.; Thomas, D.L.

    2000-03-01

    Riparian buffer zones are effective in mitigating nonpoint source pollution and have been recommended as a best management practice (BMP). The Riparian Ecosystem Management Model (REMM) has been developed for researchers and natural resource agencies as a modeling tool that can help quantify the water quality benefits of riparian buffers under varying site conditions. Processes simulated in REMM include surface and subsurface hydrology; sediment transport and deposition; carbon, nitrogen, and phosphorus transport, removal, and cycling; and vegetation growth. Management options, such as vegetation type, size of the buffer zone, and biomass harvesting also can be simulated. REMM can be used in conjunction with upland models, empirical data, or estimated loadings to examine scenarios of buffer zone design for a hillslope. Evaluation of REMM simulations with field observations shows generally good agreement between simulated and observed data for groundwater nitrate concentrations and water table depths in a mature riparian forest buffer. Sensitivity analysis showed that changes that influenced the water balance or soil moisture storage affected the streamflow output. Parameter changes that influence either hydrology or rates of nutrient cycling affected total N transport and plant N uptake.

  19. Ecosystem Demography Model: Scaling Vegetation Dynamics Across South America

    Data.gov (United States)

    National Aeronautics and Space Administration — This model product contains the source code for the Ecosystem Demography Model (ED version 1.0) as well as model input and output data for a portion of South America...

  20. Ecosystem Demography Model: Scaling Vegetation Dynamics Across South America

    Data.gov (United States)

    National Aeronautics and Space Administration — ABSTRACT: This model product contains the source code for the Ecosystem Demography Model (ED version 1.0) as well as model input and output data for a portion of...

  1. Exploring, exploiting and evolving diversity of aquatic ecosystem models

    DEFF Research Database (Denmark)

    Janssen, Annette B G; Arhonditsis, George B.; Beusen, Arthur

    2015-01-01

    Here, we present a community perspective on how to explore, exploit and evolve the diversity in aquatic ecosystem models. These models play an important role in understanding the functioning of aquatic ecosystems, filling in observation gaps and developing effective strategies for water quality...... management. In this spirit, numerous models have been developed since the 1970s. We set off to explore model diversity by making an inventory among 42 aquatic ecosystem modellers, by categorizing the resulting set of models and by analysing them for diversity. We then focus on how to exploit model diversity...... available through open-source policies, to standardize documentation and technical implementation of models, and to compare models through ensemble modelling and interdisciplinary approaches. We end with our perspective on how the field of aquatic ecosystem modelling might develop in the next 5–10 years...

  2. Community Structure and Activity of a Highly Dynamic and Nutrient-Limited Hypersaline Microbial Mat in Um Alhool Sabkha, Qatar

    KAUST Repository

    Al-Thani, Roda

    2014-03-21

    The Um Alhool area in Qatar is a dynamic evaporative ecosystem that receives seawater from below as it is surrounded by sand dunes. We investigated the chemical composition, the microbial activity and biodiversity of the four main layers (L1–L4) in the photosynthetic mats. Chlorophyll a (Chl a) concentration and distribution (measured by HPLC and hyperspectral imaging, respectively), the phycocyanin distribution (scanned with hyperspectral imaging), oxygenic photosynthesis (determined by microsensor), and the abundance of photosynthetic microorganisms (from 16S and 18S rRNA sequencing) decreased with depth in the euphotic layer (L1). Incident irradiance exponentially attenuated in the same zone reaching 1% at 1.7-mm depth. Proteobacteria dominated all layers of the mat (24%–42% of the identified bacteria). Anoxygenic photosynthetic bacteria (dominated by Chloroflexus) were most abundant in the third red layer of the mat (L3), evidenced by the spectral signature of Bacteriochlorophyll as well as by sequencing. The deep, black layer (L4) was dominated by sulfate reducing bacteria belonging to the Deltaproteobacteria, which were responsible for high sulfate reduction rates (measured using 35S tracer). Members of Halobacteria were the dominant Archaea in all layers of the mat (92%–97%), whereas Nematodes were the main Eukaryotes (up to 87%). Primary productivity rates of Um Alhool mat were similar to those of other hypersaline microbial mats. However, sulfate reduction rates were relatively low, indicating that oxygenic respiration contributes more to organic material degradation than sulfate reduction, because of bioturbation. Although Um Alhool hypersaline mat is a nutrient-limited ecosystem, it is interestingly dynamic and phylogenetically highly diverse. All its components work in a highly efficient and synchronized way to compensate for the lack of nutrient supply provided during regular inundation periods.

  3. Modelling natural disturbances in forest ecosystems: a review

    NARCIS (Netherlands)

    Seidl, R.; Fernandes, P.M.; Fonseca, T.F.; Gillet, F.; Jöhnsson, A.M.; Merganičová, K.; Netherer, S.; Arpaci, A.; Bontemps, J.D.; Bugmann, H.; González-Olabarria, J.R.; Lasch, P.; Meredieu, C.; Moreira, F.; Schelhaas, M.; Mohren, G.M.J.

    2011-01-01

    Natural disturbances play a key role in ecosystem dynamics and are important factors for sustainable forest ecosystem management. Quantitative models are frequently employed to tackle the complexities associated with disturbance processes. Here we review the wide variety of approaches to modelling

  4. Ecosystem management via interacting models of political and ecological processes

    Directory of Open Access Journals (Sweden)

    Haas, T. C.

    2004-01-01

    Full Text Available The decision to implement environmental protection options is a political one. Political realities may cause a country to not heed the most persuasive scientific analysis of an ecosystem's future health. A predictive understanding of the political processes that result in ecosystem management decisions may help guide ecosystem management policymaking. To this end, this article develops a stochastic, temporal model of how political processes influence and are influenced by ecosystem processes. This model is realized in a system of interacting influence diagrams that model the decision making of a country's political bodies. These decisions interact with a model of the ecosystem enclosed by the country. As an example, a model for Cheetah (Acinonyx jubatus management in Kenya is constructed and fitted to decision and ecological data.

  5. Producer-decomposer matching in a simple model ecosystem: A network coevolutionary approach to ecosystem organization

    International Nuclear Information System (INIS)

    Higashi, Masahiko; Yamamura, Norio; Nakajima, Hisao; Abe, Takuya

    1993-01-01

    The present not is concerned with how the ecosystem maintains its energy and matter processes, and how those processes change throughout ecological and geological time, or how the constituent biota of an ecosystem maintain their life, and how ecological (species) succession and biological evolution proceed within an ecosystem. To advance further Tansky's (1976) approach to ecosystem organization, which investigated the characteristic properties of the developmental process of a model ecosystem, by applying Margalef's (1968) maximum maturity principle to derive its long term change, we seek a course for deriving the macroscopic trends along the organization process of an ecosystem as a consequence of the interactions among its biotic components and their modification of ecological traits. Using a simple ecosystem model consisting of four aggregated components (open-quotes compartmentsclose quotes) connected by nutrient flows, we investigate how a change in the value of a parameter alters the network pattern of flows and stocks, even causing a change in the value of another parameter, which in turn brings about further change in the network pattern and values of some (possible original) parameters. The continuation of this chain reaction involving feedbacks constitutes a possible mechanism for the open-quotes coevolutionclose quotes or open-quotes matchingclose quotes among flows, stocks, and parameters

  6. Modeling dynamics of biological and chemical components of aquatic ecosystems

    International Nuclear Information System (INIS)

    Lassiter, R.R.

    1975-05-01

    To provide capability to model aquatic ecosystems or their subsystems as needed for particular research goals, a modeling strategy was developed. Submodels of several processes common to aquatic ecosystems were developed or adapted from previously existing ones. Included are submodels for photosynthesis as a function of light and depth, biological growth rates as a function of temperature, dynamic chemical equilibrium, feeding and growth, and various types of losses to biological populations. These submodels may be used as modules in the construction of models of subsystems or ecosystems. A preliminary model for the nitrogen cycle subsystem was developed using the modeling strategy and applicable submodels. (U.S.)

  7. Marine ecosystem modeling beyond the box: using GIS to study carbon fluxes in a coastal ecosystem.

    Science.gov (United States)

    Wijnbladh, Erik; Jönsson, Bror Fredrik; Kumblad, Linda

    2006-12-01

    Studies of carbon fluxes in marine ecosystems are often done by using box model approaches with basin size boxes, or highly resolved 3D models, and an emphasis on the pelagic component of the ecosystem. Those approaches work well in the ocean proper, but can give rise to considerable problems when applied to coastal systems, because of the scale of certain ecological niches and the fact that benthic organisms are the dominant functional group of the ecosystem. In addition, 3D models require an extensive modeling effort. In this project, an intermediate approach based on a high resolution (20x20 m) GIS data-grid has been developed for the coastal ecosystem in the Laxemar area (Baltic Sea, Sweden) based on a number of different site investigations. The model has been developed in the context of a safety assessment project for a proposed nuclear waste repository, in which the fate of hypothetically released radionuclides from the planned repository is estimated. The assessment project requires not only a good understanding of the ecosystem dynamics at the site, but also quantification of stocks and flows of matter in the system. The data-grid was then used to set up a carbon budget describing the spatial distribution of biomass, primary production, net ecosystem production and thus where carbon sinks and sources are located in the area. From these results, it was clear that there was a large variation in ecosystem characteristics within the basins and, on a larger scale, that the inner areas are net producing and the outer areas net respiring, even in shallow phytobenthic communities. Benthic processes had a similar or larger influence on carbon fluxes as advective processes in inner areas, whereas the opposite appears to be true in the outer basins. As many radionuclides are expected to follow the pathways of organic matter in the environment, these findings enhance our abilities to realistically describe and predict their fate in the ecosystem.

  8. Marine Ecosystem Modeling Beyond the Box: Using GIS to Study Carbon Fluxes in a Coastal Ecosystem

    International Nuclear Information System (INIS)

    Wijnbladh, Erik; Joensson, Bror Fredrik; Kumblad, Linda

    2006-01-01

    Studies of carbon fluxes in marine ecosystems are often done by using box model approaches with basin size boxes, or highly resolved 3D models, and an emphasis on the pelagic component of the ecosystem. Those approaches work well in the ocean proper, but can give rise to considerable problems when applied to coastal systems, because of the scale of certain ecological niches and the fact that benthic organisms are the dominant functional group of the ecosystem. In addition, 3D models require an extensive modeling effort. In this project, an intermediate approach based on a high resolution (20x20 m) GIS data-grid has been developed for the coastal ecosystem in the Laxemar area (Baltic Sea, Sweden) based on a number of different site investigations. The model has been developed in the context of a safety assessment project for a proposed nuclear waste repository, in which the fate of hypothetically released radionuclides from the planned repository is estimated. The assessment project requires not only a good understanding of the ecosystem dynamics at the site, but also quantification of stocks and flows of matter in the system. The data-grid was then used to set up a carbon budget describing the spatial distribution of biomass, primary production, net ecosystem production and thus where carbon sinks and sources are located in the area. From these results, it was clear that there was a large variation in ecosystem characteristics within the basins and, on a larger scale, that the inner areas are net producing and the outer areas net respiring, even in shallow phyto benthic communities. Benthic processes had a similar or larger influence on carbon fluxes as advective processes in inner areas, whereas the opposite appears to be true in the outer basins. As many radionuclides are expected to follow the pathways of organic matter in the environment, these findings enhance our abilities to realistically describe and predict their fate in the ecosystem

  9. A model ecosystem experiment and its computational simulation studies

    International Nuclear Information System (INIS)

    Doi, M.

    2002-01-01

    Simplified microbial model ecosystem and its computer simulation model are introduced as eco-toxicity test for the assessment of environmental responses from the effects of environmental impacts. To take the effects on the interactions between species and environment into account, one option is to select the keystone species on the basis of ecological knowledge, and to put it in the single-species toxicity test. Another option proposed is to put the eco-toxicity tests as experimental micro ecosystem study and a theoretical model ecosystem analysis. With these tests, the stressors which are more harmful to the ecosystems should be replace with less harmful ones on the basis of unified measures. Management of radioactive materials, chemicals, hyper-eutrophic, and other artificial disturbances of ecosystem should be discussed consistently from the unified view point of environmental protection. (N.C.)

  10. A general predictive model for estimating monthly ecosystem evapotranspiration

    Science.gov (United States)

    Ge Sun; Karrin Alstad; Jiquan Chen; Shiping Chen; Chelcy R. Ford; al. et.

    2011-01-01

    Accurately quantifying evapotranspiration (ET) is essential for modelling regional-scale ecosystem water balances. This study assembled an ET data set estimated from eddy flux and sapflow measurements for 13 ecosystems across a large climatic and management gradient from the United States, China, and Australia. Our objectives were to determine the relationships among...

  11. An ecosystem model for tropical forest disturbance and selective logging

    Science.gov (United States)

    Maoyi Huang; Gregory P. Asner; Michael Keller; Joseph A. Berry

    2008-01-01

    [1] A new three-dimensional version of the Carnegie-Ames-Stanford Approach (CASA) ecosystem model (CASA-3D) was developed to simulate regional carbon cycling in tropical forest ecosystems after disturbances such as logging. CASA-3D has the following new features: (1) an alternative approach for calculating absorbed photosynthetically active radiation (APAR) using new...

  12. A blueprint for mapping and modelling ecosystem services

    NARCIS (Netherlands)

    Crossman, N.; Burkhard, B.; Nedkov, S.; Willemen, L.L.J.; Petz, K.; Palomo, I.; Drakou, E.G.; Martín-Lopez, B.; McPhearson, T.; Boyanova, K.; Alkemade, R.; Egoh, B.; Dunbar, M.D.; Maes, J.

    2013-01-01

    The inconsistency in methods to quantify and map ecosystem services challenges the development of robust values of ecosystem services in national accounts and broader policy and natural resource management decision-making. In this paper we develop and test a blueprint to give guidance on modelling

  13. Mapping and modelling ecosystem services for science, policy and practice

    NARCIS (Netherlands)

    Burkhard, B.; Crossman, N.; Nedkov, S.; Petz, K.; Alkemade, R.

    2013-01-01

    Ecosystem services are a significant research and policy topic and there are many modelling and mapping approaches aimed at understanding the stocks, demands and flows of ecosystem services on different spatial and temporal scales. The integration of geo-biophysical processes and structure

  14. Land-use planning for nearshore ecosystem services—the Puget Sound Ecosystem Portfolio Model

    Science.gov (United States)

    Byrd, Kristin

    2011-01-01

    The 2,500 miles of shoreline and nearshore areas of Puget Sound, Washington, provide multiple benefits to people—"ecosystem services"—including important fishing, shellfishing, and recreation industries. To help resource managers plan for expected growth in coming decades, the U.S. Geological Survey Western Geographic Science Center has developed the Puget Sound Ecosystem Portfolio Model (PSEPM). Scenarios of urban growth and shoreline modifications serve as model inputs to develop alternative futures of important nearshore features such as water quality and beach habitats. Model results will support regional long-term planning decisions for the Puget Sound region.

  15. Assumptions behind size-based ecosystem models are realistic

    DEFF Research Database (Denmark)

    Andersen, Ken Haste; Blanchard, Julia L.; Fulton, Elizabeth A.

    2016-01-01

    A recent publication about balanced harvesting (Froese et al., ICES Journal of Marine Science; doi:10.1093/icesjms/fsv122) contains several erroneous statements about size-spectrum models. We refute the statements by showing that the assumptions pertaining to size-spectrum models discussed by Fro...... that there is indeed a constructive role for a wide suite of ecosystem models to evaluate fishing strategies in an ecosystem context...

  16. Assessment of Nutrient Limitation in Flood plain Forests with Two Different Techniques

    International Nuclear Information System (INIS)

    Neatrour, M.A.; Jones, R.H.; Golladay, S.W.

    2008-01-01

    We assessed nitrogen and phosphorus limitation in a flood plain forest in southern Georgia in USA using two commonly used methods: nitrogen to phosphorus (N:P) ratios in litterfall and fertilized ingrowth cores. We measured nitrogen (N) and phosphorus (P) concentrations in litterfall to determine N:P mass ratios. We also installed ingrowth cores within each site containing native soil amended with nitrogen (N), phosphorus (P), or nitrogen and phosphorus (N + P) fertilizers or without added fertilizer (C). Litter N:P ratios ranged from 16 to 22, suggesting P limitation. However, fertilized ingrowth cores indicated N limitation because fine-root length density was greater in cores fertilized with N or N + P than in those fertilized with P or without added fertilizer. We feel that these two methods of assessing nutrient limitation should be corroborated with fertilization trials prior to use on a wider basis.

  17. The role of nitrogen fixation in neotropical dry forests: insights from ecosystem modeling and field data

    Science.gov (United States)

    Trierweiler, A.; Xu, X.; Gei, M. G.; Powers, J. S.; Medvigy, D.

    2016-12-01

    Tropical dry forests (TDFs) have immense functional diversity and face multiple resource constraints (both water and nutrients). Legumes are abundant and exhibit a wide diversity of N2-fixing strategies in TDFs. The abundance and diversity of legumes and their interaction with N2-fixing bacteria may strongly control the coupled carbon-nitrogen cycle in the biome and influence whether TDFs will be particularly vulnerable or uniquely adapted to projected global change. However, the importance of N2-fixation in TDFs and the carbon cost of acquiring N through symbiotic relationships are not fully understood. Here, we use models along with field measurements to examine the role of legumes, nitrogen fixation, and plant-symbiont nutrient exchanges in TDFs. We use a new version of the Ecosystem Demography (ED2) model that has been recently parameterized for TDFs. The new version incorporates plant-mycorrhizae interactions and multiple resource constraints (carbon, nitrogen, phosphorus, and water). We represent legumes and other functional groups found in TDFs with a range of resource acquisition strategies. In the model, plants then can dynamically adjust their carbon allocation and nutrient acquisition strategies (e.g. N2-fixing bacteria and mycorrhizal fungi) according to the nutrient limitation status. We test (i) the model's performance against a nutrient gradient of field sites in Costa Rica and (ii) the model's sensitivity to the carbon cost to acquire N through fixation and mycorrhizal relationships. We also report on simulated tree community responses to ongoing field nutrient fertilization experiments. We found that the inclusion of the N2-fixation legume plant functional traits were critical to reproducing community dynamics of Costa Rican field TDF sites and have a large impact on forest biomass. Simulated ecosystem fixation rates matched the magnitude and temporal patterns of field measured fixation. Our results show that symbiotic nitrogen fixation plays an

  18. Analogous nutrient limitations in unicellular diazotrophs and Prochlorococcus in the South Pacific Ocean.

    Science.gov (United States)

    Moisander, Pia H; Zhang, Ruifeng; Boyle, Edward A; Hewson, Ian; Montoya, Joseph P; Zehr, Jonathan P

    2012-04-01

    Growth limitation of phytoplankton and unicellular nitrogen (N(2)) fixers (diazotrophs) were investigated in the oligotrophic Western South Pacific Ocean. Based on change in abundances of nifH or 23S rRNA gene copies during nutrient-enrichment experiments, the factors limiting net growth of the unicellular diazotrophs UCYN-A (Group A), Crocosphaera watsonii, γ-Proteobacterium 24774A11, and the non-diazotrophic picocyanobacterium Prochlorococcus, varied within the region. At the westernmost stations, numbers were enhanced by organic carbon added as simple sugars, a combination of iron and an organic chelator, or iron added with phosphate. At stations nearest the equator, the nutrient-limiting growth was not apparent. Maximum net growth rates for UCYN-A, C. watsonii and γ-24774A11 were 0.19, 0.61 and 0.52 d(-1), respectively, which are the first known empirical growth rates reported for the uncultivated UCYN-A and the γ-24774A11. The addition of N enhanced total phytoplankton biomass up to 5-fold, and the non-N(2)-fixing Synechococcus was among the groups that responded favorably to N addition. Nitrogen was the major nutrient-limiting phytoplankton biomass in the Western South Pacific Ocean, while availability of organic carbon or iron and organic chelator appear to limit abundances of unicellular diazotrophs. Lack of phytoplankton response to nutrient additions in the Pacific warm pool waters suggests diazotroph growth in this area is controlled by different factors than in the higher latitudes, which may partially explain previously observed variability in community composition in the region.

  19. Estimating net ecosystem exchange of carbon using the normalized difference vegetation index and an ecosystem model

    International Nuclear Information System (INIS)

    Veroustraete, F.; Patyn, J.; Myneni, R.B.

    1996-01-01

    The evaluation and prediction of changes in carbon dynamics at the ecosystem level is a key issue in studies of global change. An operational concept for the determination of carbon fluxes for the Belgian territory is the goal of the presented study. The approach is based on the integration of remotely sensed data into ecosystem models in order to evaluate photosynthetic assimilation and net ecosystem exchange (NEE). Remote sensing can be developed as an operational tool to determine the fraction of absorbed photosynthetically active radiation (feAR). A review of the methodological approach of mapping fPAR dynamics at the regional scale by means of NOAA11-A VHRR / 2 data for the year 1990 is given. The processing sequence from raw radiance values to fPAR is presented. An interesting aspect of incorporating remote sensing derived fPAR in ecosystem models is the potential for modeling actual as opposed to potential vegetation. Further work should prove whether the concepts presented and the assumptions made in this study are valid. (NEE). Complex ecosystem models with a highly predictive value for a specific ecosystem are generally not suitable for global or regional applications, since they require a substantial set of ancillary data becoming increasingly larger with increasing complexity of the model. The ideal model for our purpose is one that is simple enough to be used in global scale modeling, and which can be adapted for different ecosystems or vegetation types. The fraction of absorbed photosynthetically active radiation (fPAR) during the growing season determines in part net photosynthesis and phytomass production (Ruimy, 1995). Remotely measured red and near-infrared spectral reflectances can be used to estimate fPAR. Therefore, a possible approach is to estimate net photosynthesis, phytomass, and NEE from a combination of satellite data and an ecosystem model that includes carbon dynamics. It has to be stated that some parts of the work presented in this

  20. Model of plutonium dynamics in a deciduous forest ecosystem

    International Nuclear Information System (INIS)

    Garten, C.T. Jr.; Gardner, R.H.; Dahlman, R.C.

    1980-01-01

    A linear compartment model with donor-controlled flows between compartments was designed to describe and simulate the behavior of plutonium ( 239 240 Pu) in a contaminated forest ecosystem at Oak Ridge, TN. At steady states predicted by the model, less than 0.25% of the plutonium in the ecosystem resides in biota. Soil is the major repository of plutonium in the forest, and exchanges of plutonium between soil and litter or soil and tree roots were dominant transfers affecting the ecosystem distribution of plutonium. Variation in predicted steady-state amounts of plutonium in the forest, given variability in the model parameters, indicates that our ability to develop models of plutonium transport in ecosystems should improve with greater precision in data from natural environments and a better understanding of sources of variation in plutonium data

  1. Ecological and Social Dynamics in Simple Models of Ecosystem Management

    Directory of Open Access Journals (Sweden)

    Stephen R. Carpenter

    1999-12-01

    Full Text Available Simulation models were developed to explore and illustrate dynamics of socioecological systems. The ecosystem is a lake subject to phosphorus pollution. Phosphorus flows from agriculture to upland soils, to surface waters, where it cycles between water and sediments. The ecosystem is multistable, and moves among domains of attraction depending on the history of pollutant inputs. The alternative states yield different economic benefits. Agents form expectations about ecosystem dynamics, markets, and/or the actions of managers, and choose levels of pollutant inputs accordingly. Agents have heterogeneous beliefs and/or access to information. Their aggregate behavior determines the total rate of pollutant input. As the ecosystem changes, agents update their beliefs and expectations about the world they co-create, and modify their actions accordingly. For a wide range of scenarios, we observe irregular oscillations among ecosystem states and patterns of agent behavior. These oscillations resemble some features of the adaptive cycle of panarchy theory.

  2. Ecological effects of ionizing radiation on population and ecosystem: a computational model ecosystem study

    International Nuclear Information System (INIS)

    Doi, Masahiro; Fuma, Shoichi; Ishii, Nobuyuki; Sakashita, Tetsuya; Miyamoto, Kiriko; Takeda, Hiroshi; Kawabata, Zenichiro

    2003-01-01

    Ecosystem is a self-sustaining system of complexity, and their responses to the impacts are synergistic and subjected to the demographic stochasticity of the species, environmental stochasticity and randomness. Environmental fate and effects of radiation has ranged from observable DNA damage of the cell to the fare on tissues, individual, population, community and ecosystems. The quantitative, systematic individual-based model, SIM-COSM was developed to simulate impacts of radiation exposure and other toxicants on an aquatic microbial ecosystem (microcosm). The microcosm consists of heterotroph ciliate protozoa (Tetrahymena thermophila B) as a consumer, autotroph flagellate algae (Euglena gracilis Z) as a producer and saprotroph bacteria (Escherichia coli DH5) as a decomposer. The symbiosis among microbes is self-organized by realizing material cycle and sustained for more than 2 years after inoculation. The system can not afford to lose any one of the microbes to maintain its sustainability. Experimental ecotoxicological tests for (a) gamma radiation, (b) Manganese ions and (c) Gadolinium are summarized. Population dynamics of microbes in Microcosm and its computer simulations by SIM-COSM are shown together in a figure. Population dynamics in Microcosm and SIM-COSM exposed to 500 Gy of gamma-radiation at 50 days after inoculation are shown also in a figure. To take the effects on the interactions between species and environment into account, one option is to put the ecotoxicity tests as experimental micro ecosystem study and theoretical model ecosystem analysis. (M. Suetake)

  3. Nitrogen and phosphorus limitation over long-term ecosystem development in terrestrial ecosystems.

    Directory of Open Access Journals (Sweden)

    Duncan N L Menge

    Full Text Available Nutrient limitation to net primary production (NPP displays a diversity of patterns as ecosystems develop over a range of timescales. For example, some ecosystems transition from N limitation on young soils to P limitation on geologically old soils, whereas others appear to remain N limited. Under what conditions should N limitation and P limitation prevail? When do transitions between N and P limitation occur? We analyzed transient dynamics of multiple timescales in an ecosystem model to investigate these questions. Post-disturbance dynamics in our model are controlled by a cascade of rates, from plant uptake (very fast to litter turnover (fast to plant mortality (intermediate to plant-unavailable nutrient loss (slow to weathering (very slow. Young ecosystems are N limited when symbiotic N fixation (SNF is constrained and P weathering inputs are high relative to atmospheric N deposition and plant N:P demand, but P limited under opposite conditions. In the absence of SNF, N limitation is likely to worsen through succession (decades to centuries because P is mineralized faster than N. Over long timescales (centuries and longer this preferential P mineralization increases the N:P ratio of soil organic matter, leading to greater losses of plant-unavailable N versus P relative to plant N:P demand. These loss dynamics favor N limitation on older soils despite the rising organic matter N:P ratio. However, weathering depletion favors P limitation on older soils when continual P inputs (e.g., dust deposition are low, so nutrient limitation at the terminal equilibrium depends on the balance of these input and loss effects. If NPP switches from N to P limitation over long time periods, the transition time depends most strongly on the P weathering rate. At all timescales SNF has the capacity to overcome N limitation, so nutrient limitation depends critically on limits to SNF.

  4. AQUATOX coupled foodweb model for ecosystem risk assessment of Polybrominated diphenyl ethers (PBDEs) in lake ecosystems

    International Nuclear Information System (INIS)

    Zhang, Lulu; Liu, Jingling

    2014-01-01

    The AQUATOX model considers the direct toxic effects of chemicals and their indirect effects through foodwebs. For this study, the AQUATOX model was applied to evaluating the ecological risk of Polybrominated diphenyl ethers (PBDEs) in a highly anthropogenically disturbed lake-Baiyangdian Lake. Calibration and validation results indicated that the model can adequately describe the dynamics of 18 biological populations. Sensitivity analysis results suggested that the model is highly sensitive to temperature limitation. PBDEs risk estimate results demonstrate that estimated risk for natural ecosystems cannot be fully explained by single species toxicity data alone. The AQUATOX model could provide a good basis in ascertaining ecological protection levels of “chemicals of concern” for aquatic ecosystems. Therefore, AQUATOX can potentially be used to provide necessary information corresponding to early warning and rapid forecasting of pollutant transport and fate in the management of chemicals that put aquatic ecosystems at risk. - Highlights: • AQUATOX model incorporates direct toxic effects and indirect ecological effects. • Ecological risk of PBDEs was assessed by the AQUATOX model. • The model could help determine ecological threshold of “chemicals of concern”. - Capsule abstract: Application of the AQUATOX model to assess the direct and indirect ecological risk of PBDEs

  5. Cultural ecosystem services of mountain regions: Modelling the aesthetic value

    OpenAIRE

    Schirpke, Uta; Timmermann, Florian; Tappeiner, Ulrike; Tasser, Erich

    2016-01-01

    Mountain regions meet an increasing demand for pleasant landscapes, offering many cultural ecosystem services to both their residents and tourists. As a result of global change, land managers and policy makers are faced with changes to this landscape and need efficient evaluation techniques to assess cultural ecosystem services. This study provides a spatially explicit modelling approach to estimating aesthetic landscape values by relating spatial landscape patterns to human perceptions via a...

  6. Modelling the Congo basin ecosystems with a dynamic vegetation model

    Science.gov (United States)

    Dury, Marie; Hambuckers, Alain; Trolliet, Franck; Huynen, Marie-Claude; Haineaux, Damien; Fontaine, Corentin M.; Fayolle, Adeline; François, Louis

    2014-05-01

    The scarcity of field observations in some parts of the world makes difficult a deep understanding of some ecosystems such as humid tropical forests in Central Africa. Therefore, modelling tools are interesting alternatives to study those regions even if the lack of data often prevents sharp calibration and validation of the model projections. Dynamic vegetation models (DVMs) are process-based models that simulate shifts in potential vegetation and its associated biogeochemical and hydrological cycles in response to climate. Initially run at the global scale, DVMs can be run at any spatial scale provided that climate and soil data are available. In the framework of the BIOSERF project ("Sustainability of tropical forest biodiversity and services under climate and human pressure"), we use and adapt the CARAIB dynamic vegetation model (Dury et al., iForest - Biogeosciences and Forestry, 4:82-99, 2011) to study the Congo basin vegetation dynamics. The field campaigns have notably allowed the refinement of the vegetation representation from plant functional types (PFTs) to individual species through the collection of parameters such as the specific leaf area or the leaf C:N ratio of common tropical tree species and the location of their present-day occurrences from literature and available database. Here, we test the model ability to reproduce the present spatial and temporal variations of carbon stocks (e.g. biomass, soil carbon) and fluxes (e.g. gross and net primary productivities (GPP and NPP), net ecosystem production (NEP)) as well as the observed distribution of the studied species over the Congo basin. In the lack of abundant and long-term measurements, we compare model results with time series of remote sensing products (e.g. vegetation leaf area index (LAI), GPP and NPP). Several sensitivity tests are presented: we assess consecutively the impacts of the level at which the vegetation is simulated (PFTs or species), the spatial resolution and the initial land

  7. Substrate and nutrient limitation of ammonia-oxidizing bacteria and archaea in temperate forest soil

    Science.gov (United States)

    J.S. Norman; J.E. Barrett

    2014-01-01

    Ammonia-oxidizing microbes control the rate-limiting step of nitrification, a critical ecosystem process, which affects retention and mobility of nitrogen in soil ecosystems. This study investigated substrate (NH4þ) and nutrient (K and P) limitation of ammonia-oxidizing bacteria (AOB) and ammonia-oxidizing archaea (AOA) in temperate forest soils at Coweeta Hydrologic...

  8. Optimal foraging in marine ecosystem models: selectivity, profitability and switching

    DEFF Research Database (Denmark)

    Visser, Andre W.; Fiksen, Ø.

    2013-01-01

    ecological mechanics and evolutionary logic as a solution to diet selection in ecosystem models. When a predator can consume a range of prey items it has to choose which foraging mode to use, which prey to ignore and which ones to pursue, and animals are known to be particularly skilled in adapting...... to the preference functions commonly used in models today. Indeed, depending on prey class resolution, optimal foraging can yield feeding rates that are considerably different from the ‘switching functions’ often applied in marine ecosystem models. Dietary inclusion is dictated by two optimality choices: 1...... by letting predators maximize energy intake or more properly, some measure of fitness where predation risk and cost are also included. An optimal foraging or fitness maximizing approach will give marine ecosystem models a sound principle to determine trophic interactions...

  9. Modelling ecosystem service flows under uncertainty with stochiastic SPAN

    Science.gov (United States)

    Johnson, Gary W.; Snapp, Robert R.; Villa, Ferdinando; Bagstad, Kenneth J.

    2012-01-01

    Ecosystem service models are increasingly in demand for decision making. However, the data required to run these models are often patchy, missing, outdated, or untrustworthy. Further, communication of data and model uncertainty to decision makers is often either absent or unintuitive. In this work, we introduce a systematic approach to addressing both the data gap and the difficulty in communicating uncertainty through a stochastic adaptation of the Service Path Attribution Networks (SPAN) framework. The SPAN formalism assesses ecosystem services through a set of up to 16 maps, which characterize the services in a study area in terms of flow pathways between ecosystems and human beneficiaries. Although the SPAN algorithms were originally defined deterministically, we present them here in a stochastic framework which combines probabilistic input data with a stochastic transport model in order to generate probabilistic spatial outputs. This enables a novel feature among ecosystem service models: the ability to spatially visualize uncertainty in the model results. The stochastic SPAN model can analyze areas where data limitations are prohibitive for deterministic models. Greater uncertainty in the model inputs (including missing data) should lead to greater uncertainty expressed in the model’s output distributions. By using Bayesian belief networks to fill data gaps and expert-provided trust assignments to augment untrustworthy or outdated information, we can account for uncertainty in input data, producing a model that is still able to run and provide information where strictly deterministic models could not. Taken together, these attributes enable more robust and intuitive modelling of ecosystem services under uncertainty.

  10. Inferential ecosystem models, from network data to prediction

    Science.gov (United States)

    James S. Clark; Pankaj Agarwal; David M. Bell; Paul G. Flikkema; Alan Gelfand; Xuanlong Nguyen; Eric Ward; Jun Yang

    2011-01-01

    Recent developments suggest that predictive modeling could begin to play a larger role not only for data analysis, but also for data collection. We address the example of efficient wireless sensor networks, where inferential ecosystem models can be used to weigh the value of an observation against the cost of data collection. Transmission costs make observations ‘‘...

  11. Modeling carbon and nitrogen biogeochemistry in forest ecosystems

    Science.gov (United States)

    Changsheng Li; Carl Trettin; Ge Sun; Steve McNulty; Klaus Butterbach-Bahl

    2005-01-01

    A forest biogeochemical model, Forest-DNDC, was developed to quantify carbon sequestration in and trace gas emissions from forest ecosystems. Forest-DNDC was constructed by integrating two existing moels, PnET and DNDC, with several new features including nitrification, forest litter layer, soil freezing and thawing etc, PnET is a forest physiological model predicting...

  12. Models for predicting fuel consumption in sagebrush-dominated ecosystems

    Science.gov (United States)

    Clinton S. Wright

    2013-01-01

    Fuel consumption predictions are necessary to accurately estimate or model fire effects, including pollutant emissions during wildland fires. Fuel and environmental measurements on a series of operational prescribed fires were used to develop empirical models for predicting fuel consumption in big sagebrush (Artemisia tridentate Nutt.) ecosystems....

  13. A community-based framework for aquatic ecosystem models

    NARCIS (Netherlands)

    Trolle, D.; Hamilton, D.P.; Hipsey, M.R.; Bolding, K.; Bruggeman, J.; Mooij, W.M.; Janse, J.H.; Nielsen, A.; Jeppesen, E.; Elliott, J.A.; Makler-Pick, V.; Petzoldt, T.; Rinke, K.; Flindt, M.R.; Arhonditsis, G.B.; Gal, G.; Bjerring, R.; Tominaga, K.; Hoen, 't J.; Downing, A.S.; Marques, D.M.; Fragoso, C.R.; Sondergaard, M.; Hanson, P.C.

    2012-01-01

    Here, we communicate a point of departure in the development of aquatic ecosystem models, namely a new community-based framework, which supports an enhanced and transparent union between the collective expertise that exists in the communities of traditional ecologists and model developers. Through a

  14. Evaluating the governance model of hardware-dependent software ecosystems - a case study of the axis ecosystem

    DEFF Research Database (Denmark)

    Wnuk, Krzysztof; Manikas, Konstantinos; Runeson, Per

    2014-01-01

    specifically, we evaluate the governance model applied by Axis, a network video and surveillance camera producer, that is the platform owner and orchestrator of the Application Development Partner (ADP) software ecosystem. We conduct an exploratory case study collecting data from observations and interviews...... and apply the governance model for prevention and improvement of the software ecosystem health proposed by Jansen and Cusumano. Our results reveal that although the governance actions do not address the majority of their governance model, the ADP ecosystem is considered a growing ecosystem providing...

  15. Use of hydrologic and hydrodynamic modeling for ecosystem restoration

    Science.gov (United States)

    Obeysekera, J.; Kuebler, L.; Ahmed, S.; Chang, M.-L.; Engel, V.; Langevin, C.; Swain, E.; Wan, Y.

    2011-01-01

    Planning and implementation of unprecedented projects for restoring the greater Everglades ecosystem are underway and the hydrologic and hydrodynamic modeling of restoration alternatives has become essential for success of restoration efforts. In view of the complex nature of the South Florida water resources system, regional-scale (system-wide) hydrologic models have been developed and used extensively for the development of the Comprehensive Everglades Restoration Plan. In addition, numerous subregional-scale hydrologic and hydrodynamic models have been developed and are being used for evaluating project-scale water management plans associated with urban, agricultural, and inland costal ecosystems. The authors provide a comprehensive summary of models of all scales, as well as the next generation models under development to meet the future needs of ecosystem restoration efforts in South Florida. The multiagency efforts to develop and apply models have allowed the agencies to understand the complex hydrologic interactions, quantify appropriate performance measures, and use new technologies in simulation algorithms, software development, and GIS/database techniques to meet the future modeling needs of the ecosystem restoration programs. Copyright ?? 2011 Taylor & Francis Group, LLC.

  16. A comparison of tools for modeling freshwater ecosystem services.

    Science.gov (United States)

    Vigerstol, Kari L; Aukema, Juliann E

    2011-10-01

    Interest in ecosystem services has grown tremendously among a wide range of sectors, including government agencies, NGO's and the business community. Ecosystem services entailing freshwater (e.g. flood control, the provision of hydropower, and water supply), as well as carbon storage and sequestration, have received the greatest attention in both scientific and on-the-ground applications. Given the newness of the field and the variety of tools for predicting water-based services, it is difficult to know which tools to use for different questions. There are two types of freshwater-related tools--traditional hydrologic tools and newer ecosystem services tools. Here we review two of the most prominent tools of each type and their possible applications. In particular, we compare the data requirements, ease of use, questions addressed, and interpretability of results among the models. We discuss the strengths, challenges and most appropriate applications of the different models. Traditional hydrological tools provide more detail whereas ecosystem services tools tend to be more accessible to non-experts and can provide a good general picture of these ecosystem services. We also suggest gaps in the modeling toolbox that would provide the greatest advances by improving existing tools. Copyright © 2011 Elsevier Ltd. All rights reserved.

  17. Nutrient Limitation in Surface Waters of the Oligotrophic Eastern Mediterranean Sea: an Enrichment Microcosm Experiment

    KAUST Repository

    Tsiola, A.

    2015-12-01

    The growth rates of planktonic microbes in the pelagic zone of the Eastern Mediterranean Sea are nutrient limited, but the type of limitation is still uncertain. During this study, we investigated the occurrence of N and P limitation among different groups of the prokaryotic and eukaryotic (pico-, nano-, and micro-) plankton using a microcosm experiment during stratified water column conditions in the Cretan Sea (Eastern Mediterranean). Microcosms were enriched with N and P (either solely or simultaneously), and the PO4 turnover time, prokaryotic heterotrophic activity, primary production, and the abundance of the different microbial components were measured. Flow cytometric and molecular fingerprint analyses showed that different heterotrophic prokaryotic groups were limited by different nutrients; total heterotrophic prokaryotic growth was limited by P, but only when both N and P were added, changes in community structure and cell size were detected. Phytoplankton were N and P co-limited, with autotrophic pico-eukaryotes being the exception as they increased even when only P was added after a 2-day time lag. The populations of Synechococcus and Prochlorococcus were highly competitive with each other; Prochlorococcus abundance increased during the first 2 days of P addition but kept increasing only when both N and P were added, whereas Synechococcus exhibited higher pigment content and increased in abundance 3 days after simultaneous N and P additions. Dinoflagellates also showed opportunistic behavior at simultaneous N and P additions, in contrast to diatoms and coccolithophores, which diminished in all incubations. High DNA content viruses, selective grazing, and the exhaustion of N sources probably controlled the populations of diatoms and coccolithophores.

  18. Damped trophic cascades driven by fishing in model marine ecosystems

    DEFF Research Database (Denmark)

    Andersen, Ken Haste; Pedersen, Martin

    2010-01-01

    The largest perturbation on upper trophic levels of many marine ecosystems stems from fishing. The reaction of the ecosystem goes beyond the trophic levels directly targeted by the fishery. This reaction has been described either as a change in slope of the overall size spectrum or as a trophic...... cascade triggered by the removal of top predators. Here we use a novel size- and trait-based model to explore how marine ecosystems might react to perturbations from different types of fishing pressure. The model explicitly resolves the whole life history of fish, from larvae to adults. The results show...... that fishing does not change the overall slope of the size spectrum, but depletes the largest individuals and induces trophic cascades. A trophic cascade can propagate both up and down in trophic levels driven by a combination of changes in predation mortality and food limitation. The cascade is damped...

  19. Challenges and opportunities for integrating lake ecosystem modelling approaches

    Science.gov (United States)

    Mooij, Wolf M.; Trolle, Dennis; Jeppesen, Erik; Arhonditsis, George; Belolipetsky, Pavel V.; Chitamwebwa, Deonatus B.R.; Degermendzhy, Andrey G.; DeAngelis, Donald L.; Domis, Lisette N. De Senerpont; Downing, Andrea S.; Elliott, J. Alex; Ruberto, Carlos Ruberto; Gaedke, Ursula; Genova, Svetlana N.; Gulati, Ramesh D.; Hakanson, Lars; Hamilton, David P.; Hipsey, Matthew R.; Hoen, Jochem 't; Hulsmann, Stephan; Los, F. Hans; Makler-Pick, Vardit; Petzoldt, Thomas; Prokopkin, Igor G.; Rinke, Karsten; Schep, Sebastiaan A.; Tominaga, Koji; Van Dam, Anne A.; Van Nes, Egbert H.; Wells, Scott A.; Janse, Jan H.

    2010-01-01

    A large number and wide variety of lake ecosystem models have been developed and published during the past four decades. We identify two challenges for making further progress in this field. One such challenge is to avoid developing more models largely following the concept of others ('reinventing the wheel'). The other challenge is to avoid focusing on only one type of model, while ignoring new and diverse approaches that have become available ('having tunnel vision'). In this paper, we aim at improving the awareness of existing models and knowledge of concurrent approaches in lake ecosystem modelling, without covering all possible model tools and avenues. First, we present a broad variety of modelling approaches. To illustrate these approaches, we give brief descriptions of rather arbitrarily selected sets of specific models. We deal with static models (steady state and regression models), complex dynamic models (CAEDYM, CE-QUAL-W2, Delft 3D-ECO, LakeMab, LakeWeb, MyLake, PCLake, PROTECH, SALMO), structurally dynamic models and minimal dynamic models. We also discuss a group of approaches that could all be classified as individual based: super-individual models (Piscator, Charisma), physiologically structured models, stage-structured models and trait-based models. We briefly mention genetic algorithms, neural networks, Kalman filters and fuzzy logic. Thereafter, we zoom in, as an in-depth example, on the multi-decadal development and application of the lake ecosystem model PCLake and related models (PCLake Metamodel, Lake Shira Model, IPH-TRIM3D-PCLake). In the discussion, we argue that while the historical development of each approach and model is understandable given its 'leading principle', there are many opportunities for combining approaches. We take the point of view that a single 'right' approach does not exist and should not be strived for. Instead, multiple modelling approaches, applied concurrently to a given problem, can help develop an integrative

  20. A probabilistic model of ecosystem response to climate change

    International Nuclear Information System (INIS)

    Shevliakova, E.; Dowlatabadi, H.

    1994-01-01

    Anthropogenic activities are leading to rapid changes in land cover and emissions of greenhouse gases into the atmosphere. These changes can bring about climate change typified by average global temperatures rising by 1--5 C over the next century. Climate change of this magnitude is likely to alter the distribution of terrestrial ecosystems on a large scale. Options available for dealing with such change are abatement of emissions, adaptation, and geoengineering. The integrated assessment of climate change demands that frameworks be developed where all the elements of the climate problem are present (from economic activity to climate change and its impacts on market and non-market goods and services). Integrated climate assessment requires multiple impact metrics and multi-attribute utility functions to simulate the response of different key actors/decision-makers to the actual physical impacts (rather than a dollar value) of the climate-damage vs. policy-cost debate. This necessitates direct modeling of ecosystem impacts of climate change. The authors have developed a probabilistic model of ecosystem response to global change. This model differs from previous efforts in that it is statistically estimated using actual ecosystem and climate data yielding a joint multivariate probability of prevalence for each ecosystem, given climatic conditions. The authors expect this approach to permit simulation of inertia and competition which have, so far, been absent in transfer models of continental-scale ecosystem response to global change. Thus, although the probability of one ecotype will dominate others at a given point, others would have the possibility of establishing an early foothold

  1. Modelling of radionuclide migration in forest ecosystems. A literature review

    Energy Technology Data Exchange (ETDEWEB)

    Avila, R.; Moberg, L.; Hubbard, L.

    1998-03-01

    The Chernobyl accident has clearly shown the long-term effects of a radioactive contamination of forest ecosystems. This report is based on a literature review of models which describe the migration of radionuclides, radioactive caesium in particular, in forest ecosystems. The report describes the particularities of the forest ecosystem, the time dynamics of the contamination, the transfer processes and factors influencing caesium migration. This provides a basis for a discussion of different approaches for modelling caesium migration in the forest. It is concluded that the studied dynamic models include the most relevant transfer processes both for the acute and the long-term phase after a radioactive deposition. However, most models are site specific and do not consider some of the factors responsible for the differences in radionuclide behaviour and distribution in different types of forests. Although model improvements are constrained by the availability of experimental data and by the lack of knowledge of the migration mechanisms some possible improvements are discussed. This report is part of the LANDSCAPE project. -An integrated approach to radionuclide flow in the semi-natural ecosystems underlying exposure pathways to man. 42 refs, 3 tabs, 9 figs.

  2. Modelling of radionuclide migration in forest ecosystems. A literature review

    International Nuclear Information System (INIS)

    Avila, R.; Moberg, L.; Hubbard, L.

    1998-03-01

    The Chernobyl accident has clearly shown the long-term effects of a radioactive contamination of forest ecosystems. This report is based on a literature review of models which describe the migration of radionuclides, radioactive caesium in particular, in forest ecosystems. The report describes the particularities of the forest ecosystem, the time dynamics of the contamination, the transfer processes and factors influencing caesium migration. This provides a basis for a discussion of different approaches for modelling caesium migration in the forest. It is concluded that the studied dynamic models include the most relevant transfer processes both for the acute and the long-term phase after a radioactive deposition. However, most models are site specific and do not consider some of the factors responsible for the differences in radionuclide behaviour and distribution in different types of forests. Although model improvements are constrained by the availability of experimental data and by the lack of knowledge of the migration mechanisms some possible improvements are discussed. This report is part of the LANDSCAPE project. -An integrated approach to radionuclide flow in the semi-natural ecosystems underlying exposure pathways to man

  3. Elemental economy: microbial strategies for optimizing growth in the face of nutrient limitation.

    Science.gov (United States)

    Merchant, Sabeeha S; Helmann, John D

    2012-01-01

    Microorganisms play a dominant role in the biogeochemical cycling of nutrients. They are rightly praised for their facility for fixing both carbon and nitrogen into organic matter, and microbial driven processes have tangibly altered the chemical composition of the biosphere and its surrounding atmosphere. Despite their prodigious capacity for molecular transformations, microorganisms are powerless in the face of the immutability of the elements. Limitations for specific elements, either fleeting or persisting over eons, have left an indelible trace on microbial genomes, physiology, and their very atomic composition. We here review the impact of elemental limitation on microbes, with a focus on selected genetic model systems and representative microbes from the ocean ecosystem. Evolutionary adaptations that enhance growth in the face of persistent or recurrent elemental limitations are evident from genome and proteome analyses. These range from the extreme (such as dispensing with a requirement for a hard to obtain element) to the extremely subtle (changes in protein amino acid sequences that slightly, but significantly, reduce cellular carbon, nitrogen, or sulfur demand). One near-universal adaptation is the development of sophisticated acclimation programs by which cells adjust their chemical composition in response to a changing environment. When specific elements become limiting, acclimation typically begins with an increased commitment to acquisition and a concomitant mobilization of stored resources. If elemental limitation persists, the cell implements austerity measures including elemental sparing and elemental recycling. Insights into these fundamental cellular properties have emerged from studies at many different levels, including ecology, biological oceanography, biogeochemistry, molecular genetics, genomics, and microbial physiology. Here, we present a synthesis of these diverse studies and attempt to discern some overarching themes. Copyright © 2012

  4. Evaluating the Governance Model of Hardware-Dependent Software Ecosystems – A Case Study of the Axis Ecosystem

    OpenAIRE

    Wnuk, Krzysztof; Manikas, Konstantinos; Runeson, Per; Matilda, Lantz; Oskar, Weijden; Munir, Hussan

    2014-01-01

    Ecosystem governance becomes gradually more relevant for a set of companies or actors characterized by symbiotic relations evolved on the top of a technological platform, i.e. a software ecosystem. In this study, we focus on the governance of a hardware-dependent software ecosystem. More specifically, we evaluate the governance model applied by Axis, a network video and surveillance camera producer, that is the platform owner and orchestrator of the Application Development Partner (ADP) softw...

  5. The repertoire and dynamics of evolutionary adaptations to controlled nutrient-limited environments in yeast.

    Directory of Open Access Journals (Sweden)

    David Gresham

    2008-12-01

    Full Text Available The experimental evolution of laboratory populations of microbes provides an opportunity to observe the evolutionary dynamics of adaptation in real time. Until very recently, however, such studies have been limited by our inability to systematically find mutations in evolved organisms. We overcome this limitation by using a variety of DNA microarray-based techniques to characterize genetic changes -- including point mutations, structural changes, and insertion variation -- that resulted from the experimental adaptation of 24 haploid and diploid cultures of Saccharomyces cerevisiae to growth in either glucose, sulfate, or phosphate-limited chemostats for approximately 200 generations. We identified frequent genomic amplifications and rearrangements as well as novel retrotransposition events associated with adaptation. Global nucleotide variation detection in ten clonal isolates identified 32 point mutations. On the basis of mutation frequencies, we infer that these mutations and the subsequent dynamics of adaptation are determined by the batch phase of growth prior to initiation of the continuous phase in the chemostat. We relate these genotypic changes to phenotypic outcomes, namely global patterns of gene expression, and to increases in fitness by 5-50%. We found that the spectrum of available mutations in glucose- or phosphate-limited environments combined with the batch phase population dynamics early in our experiments allowed several distinct genotypic and phenotypic evolutionary pathways in response to these nutrient limitations. By contrast, sulfate-limited populations were much more constrained in both genotypic and phenotypic outcomes. Thus, the reproducibility of evolution varies with specific selective pressures, reflecting the constraints inherent in the system-level organization of metabolic processes in the cell. We were able to relate some of the observed adaptive mutations (e.g., transporter gene amplifications to known features

  6. Linking an ecosystem model and a landscape model to study forest species response to climate warming

    Science.gov (United States)

    Hong S. He; David J. Mladenoff; Thomas R. Crow

    1999-01-01

    No single model can address forest change from single tree to regional scales. We discuss a framework linking an ecosystem process model {LINKAGES) with a spatial landscape model (LANDIS) to examine forest species responses to climate warming for a large, heterogeneous landscape in northern Wisconsin, USA. Individual species response at the ecosystem scale was...

  7. Model of a coral reef ecosystem

    Science.gov (United States)

    Atkinson, Marlin J.; Grigg, Richard W.

    1984-08-01

    The ECOPATH model for French Frigate Shoals estimates the benthic plant production (net primary production in kg wet weight) required to support the atoll food chain. In this section we estimate the benthic net primary production and net community production of the atoll based on metabolism studies of reef flat, knolls, and lagoon communities at French Frigate Shoals Hawaii. Community metabolism was measured during winter and summer. The reef communities at French Frigate Shoals exhibited patterns and rates of organic carbon production and calcification similar to other reefs in the world. The estimate of net primary production is 6.1·106 kg wet weight km-2 year-1±50%, a value remarkably close to the estimate by the ECOPATH model of 4.3·106 kg wet weight km-2 year-1. Our estimate of net community production or the amount of carbon not consumed by the benthos was high; approximately 15% of the net primary production. Model results indicate that about 5% of net primary production is passed up the food chain to mobile predators. This suggests about 10% of net primary production (˜6% of gross primary production) may be permanently lost to the system via sediment burial or export offshore.

  8. Integrated modelling of ecosystem services and energy systems research

    Science.gov (United States)

    Agarwala, Matthew; Lovett, Andrew; Bateman, Ian; Day, Brett; Agnolucci, Paolo; Ziv, Guy

    2016-04-01

    The UK Government is formally committed to reducing carbon emissions and protecting and improving natural capital and the environment. However, actually delivering on these objectives requires an integrated approach to addressing two parallel challenges: de-carbonising future energy system pathways; and safeguarding natural capital to ensure the continued flow of ecosystem services. Although both emphasise benefiting from natural resources, efforts to connect natural capital and energy systems research have been limited, meaning opportunities to improve management of natural resources and meet society's energy needs could be missed. The ecosystem services paradigm provides a consistent conceptual framework that applies in multiple disciplines across the natural and economic sciences, and facilitates collaboration between them. At the forefront of the field, integrated ecosystem service - economy models have guided public- and private-sector decision making at all levels. Models vary in sophistication from simple spreadsheet tools to complex software packages integrating biophysical, GIS and economic models and draw upon many fields, including ecology, hydrology, geography, systems theory, economics and the social sciences. They also differ in their ability to value changes in natural capital and ecosystem services at various spatial and temporal scales. Despite these differences, current models share a common feature: their treatment of energy systems is superficial at best. In contrast, energy systems research has no widely adopted, unifying conceptual framework that organises thinking about key system components and interactions. Instead, the literature is organised around modelling approaches, including life cycle analyses, econometric investigations, linear programming and computable general equilibrium models. However, some consistencies do emerge. First, often contain a linear set of steps, from exploration to resource supply, fuel processing, conversion

  9. Trophic dynamics of a simple model ecosystem.

    Science.gov (United States)

    Bell, Graham; Fortier-Dubois, Étienne

    2017-09-13

    We have constructed a model of community dynamics that is simple enough to enumerate all possible food webs, yet complex enough to represent a wide range of ecological processes. We use the transition matrix to predict the outcome of succession and then investigate how the transition probabilities are governed by resource supply and immigration. Low-input regimes lead to simple communities whereas trophically complex communities develop when there is an adequate supply of both resources and immigrants. Our interpretation of trophic dynamics in complex communities hinges on a new principle of mutual replenishment, defined as the reciprocal alternation of state in a pair of communities linked by the invasion and extinction of a shared species. Such neutral couples are the outcome of succession under local dispersal and imply that food webs will often be made up of suites of trophically equivalent species. When immigrants arrive from an external pool of fixed composition a similar principle predicts a dynamic core of webs constituting a neutral interchange network, although communities may express an extensive range of other webs whose membership is only in part predictable. The food web is not in general predictable from whole-community properties such as productivity or stability, although it may profoundly influence these properties. © 2017 The Author(s).

  10. Puget Sound ocean acidification model outputs - Modeling the impacts of ocean acidification on ecosystems and populations

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The NWFSC OA team will model the effects of ocean acidification on regional marine species and ecosystems using food web models, life-cycle models, and bioenvelope...

  11. Making eco logic and models work : An integrative approach to lake ecosystem modelling

    NARCIS (Netherlands)

    Kuiper, Jan Jurjen

    2016-01-01

    Dynamical ecosystem models are important tools that can help ecologists understand complex systems, and turn understanding into predictions of how these systems respond to external changes. This thesis revolves around PCLake, an integrated ecosystem model of shallow lakes that is used by both

  12. Measuring and Modeling the U.S. Regulatory Ecosystem

    Science.gov (United States)

    Bommarito, Michael J., II; Katz, Daniel Martin

    2017-09-01

    Over the last 23 years, the U.S. Securities and Exchange Commission has required over 34,000 companies to file over 165,000 annual reports. These reports, the so-called "Form 10-Ks," contain a characterization of a company's financial performance and its risks, including the regulatory environment in which a company operates. In this paper, we analyze over 4.5 million references to U.S. Federal Acts and Agencies contained within these reports to measure the regulatory ecosystem, in which companies are organisms inhabiting a regulatory environment. While individuals across the political, economic, and academic world frequently refer to trends in this regulatory ecosystem, far less attention has been paid to supporting such claims with large-scale, longitudinal data. In this paper, in addition to positing a model of regulatory ecosystems, we document an increase in the regulatory energy per filing, i.e., a warming "temperature." We also find that the diversity of the regulatory ecosystem has been increasing over the past two decades. These findings support the claim that regulatory activity and complexity are increasing, and this framework contributes an important step towards improving academic and policy discussions around legal complexity and regulation.

  13. Denitrification and Ecosystem Services: Mapping and Modeling Conservation Effects

    Science.gov (United States)

    Morris, C. K.; Walter, T.

    2012-12-01

    Precision conservation is the latest effort to increase higher efficiency in agricultural best management practices by considering the spatial and temporal variability in agroecosystems. The authors have developed a framework for incorporating the ecosystem service of denitrification into an existing precision conservation mapping tool. The model identifies areas of denitirification and quantifies potential denitrification when a conservation practice is adopted. The methodology is being tested in a small subwatershed in the Upper Susquehanna Basin of New York State.

  14. Outdoor model simulating a Baltic Sea littoral ecosystem

    Energy Technology Data Exchange (ETDEWEB)

    Notini, M; Nagell, B; Hagstroem, A; Grahn, O

    1977-01-01

    Plastic pools (surface 6.6 m/sup 2/, volume 4.2 m/sup 3/) were equipped with a flow-through system providing 2.51 min/sup -1/. Except for fish predators the main components of the flora and fauna of the Baltic littoral zone were introduced into the pools to form a model of the ecosystem. During 8 weeks the macroscopic epifauna and infauna of the bladder wrack Fucus vesiculosus L. were found to be qualitatively and quantitatively fairly stable, and the number of aerobic heterotrophic bacteria showed little variation. Oxygen concentration, temperature and pH were recorded and compared with values measured in the littoral zone. The results indicate good agreement between the characters of the model system and of the natural littoral ecosystem. This together with the observed stability and the possibilities for controlling and measuring the conditions in the system makes us believe that the model is a valuable tool for assessing toxic effects on the littoral ecosystem.

  15. Environmental fate of rice paddy pesticides in a model ecosystem.

    Science.gov (United States)

    Tomizawa, C; Kazano, H

    1979-01-01

    The distribution and metabolic fate of several rice paddy pesticides were evaluated in a modified model ecosystem. Among the three BHC isomers, beta-isomer was the most stable and bioconcentrated in all of the organisms. Alpha- and gamma-isomers were moderately persistent and degraded to some extent during the 33 day period. Disulfoton was relatively persistent due to the transformation to its oxidation products. Pyridaphenthion was fairly biodegradable. N-Phenyl maleic hydrazide derived from the hydrolysis of pyridaphenthion was not detected in the organisms though it was found in the aquarium water after 33 days. Cartap and edifenphos were considerably biodegradable, and the ratio of the conversion to water soluble metabolites was very high. There was a distinct difference in the persistence of Kitazin P and edifenphos in the aquarium water. It appeared that the hydrolysis rate of the pesticides affected their fate in the organisms. PCP appeared to be moderately biodegradable. CNP was considerably stable and stored in the organisms though the concentration in the aquarium water was relatively low. The persistence and distribution of the pesticides in the model ecosystem were dependent on their chemical structures. In spite of the limitation derived from short experimental period, the model ecosystem may be applicable for predicting the environmental fate of pesticides.

  16. Stochastic models for predicting environmental impact in aquatic ecosystems

    International Nuclear Information System (INIS)

    Stewart-Oaten, A.

    1986-01-01

    The purpose of stochastic predictions are discussed in relation to the environmental impacts of nuclear power plants on aquatic ecosystems. One purpose is to aid in making rational decisions about whether a power plant should be built, where, and how it should be designed. The other purpose is to check on the models themselves in the light of what eventually happens. The author discusses the role or statistical decision theory in the decision-making problem. Various types of stochastic models and their problems are presented. In addition some suggestions are made for generating usable stochastic models, and checking and improving on them. 12 references

  17. Can models help to forecast rainwater dynamics for rainfed ecosystem?

    Directory of Open Access Journals (Sweden)

    Mukhtar Ahmed

    2014-10-01

    Full Text Available Simulation models are important tools to explore and illustrate dynamics of climatic variables in crop based ecosystem. In the rainfed ecosystem (RE, wheat production is impinged on certain climatic events per se high variability in rainfall and increased temperature. These climatic events turn out due to climatic drivers like Sea Surface Temperatures (SSTs and pressure. Current study is aimed to analyze long term rainfall data (1961–2011 of Pakistan׳s rainfed ecosystem zone (Islamabad, Chakwal and Talagang by using Agricultural Production Systems Simulator (APSIM and R model. The principal objective of this analysis was to study the link between SOI phases and SSTs; and thereby understanding the pattern of climate change due to these climatic drivers under rainfed conditions in Pakistan. The results revealed a positive link between July SOI phases and the rainfall variability during October–November (the sowing time of wheat in Pakistan. Long term rainfall data analysis (1961–2011 of Islamabad, Chakwal and Talagang revealed 44%, 40%, 35% possibility of exceeding median rainfall near zero whereas probability of consistently negative SOI phases were 35%, 34% and 33% respectively during July. Similarly, the forecasting results estimated by R using covariates like dry spell, NINO1.2, NINO3, NINO4, NINO3.4 and IOD of different months revealed that prediction of monsoon, wheat early growth, wheat grain filling period and total wheat growing season rainfall, have significant signals with climatic drivers. The study justified the importance of models in the decision making processes and rainfall forecasting as a beneficial and necessary tool for rainfed ecosystem conservation.

  18. Using models in Integrated Ecosystem Assessment of coastal areas

    Science.gov (United States)

    Solidoro, Cosimo; Bandelj, Vinko; Cossarini, Gianpiero; Melaku Canu, Donata; Libralato, Simone

    2014-05-01

    Numerical Models can greatly contribute to integrated ecological assessment of coastal and marine systems. Indeed, models can: i) assist in the identification of efficient sampling strategy; ii) provide space interpolation and time extrapolation of experiemtanl data which are based on the knowedge on processes dynamics and causal realtionships which is coded within the model, iii) provide estimates of hardly measurable indicators. Furthermore model can provide indication on potential effects of implementation of alternative management policies. Finally, by providing a synthetic representation of an ideal system, based on its essential dynamic, model return a picture of ideal behaviour of a system in the absence of external perturbation, alteration, noise, which might help in the identification of reference behaivuor. As an important example, model based reanalyses of biogeochemical and ecological properties are an urgent need for the estimate of the environmental status and the assessment of efficacy of conservation and environmental policies, also with reference to the enforcement of the European MSFD. However, the use of numerical models, and particularly of ecological models, in modeling and in environmental management still is far from be the rule, possibly because of a lack in realizing the benefits which a full integration of modeling and montoring systems might provide, possibly because of a lack of trust in modeling results, or because many problems still exists in the development, validation and implementation of models. For istance, assessing the validity of model results is a complex process that requires the definition of appropriate indicators, metrics, methodologies and faces with the scarcity of real-time in-situ biogeochemical data. Furthermore, biogeochemical models typically consider dozens of variables which are heavily undersampled. Here we show how the integration of mathematical model and monitoring data can support integrated ecosystem

  19. Modelling C₃ photosynthesis from the chloroplast to the ecosystem.

    Science.gov (United States)

    Bernacchi, Carl J; Bagley, Justin E; Serbin, Shawn P; Ruiz-Vera, Ursula M; Rosenthal, David M; Vanloocke, Andy

    2013-09-01

    Globally, photosynthesis accounts for the largest flux of CO₂ from the atmosphere into ecosystems and is the driving process for terrestrial ecosystem function. The importance of accurate predictions of photosynthesis over a range of plant growth conditions led to the development of a C₃ photosynthesis model by Farquhar, von Caemmerer & Berry that has become increasingly important as society places greater pressures on vegetation. The photosynthesis model has played a major role in defining the path towards scientific understanding of photosynthetic carbon uptake and the role of photosynthesis on regulating the earth's climate and biogeochemical systems. In this review, we summarize the photosynthesis model, including its continued development and applications. We also review the implications these developments have on quantifying photosynthesis at a wide range of spatial and temporal scales, and discuss the model's role in determining photosynthetic responses to changes in environmental conditions. Finally, the review includes a discussion of the larger-scale modelling and remote-sensing applications that rely on the leaf photosynthesis model and are likely to open new scientific avenues to address the increasing challenges to plant productivity over the next century. Published 2013. This article is a U.S. Government work and is in the public domain in the USA.

  20. A methodology for ecosystem-scale modeling of selenium

    Science.gov (United States)

    Presser, T.S.; Luoma, S.N.

    2010-01-01

    The main route of exposure for selenium (Se) is dietary, yet regulations lack biologically based protocols for evaluations of risk. We propose here an ecosystem-scale model that conceptualizes and quantifies the variables that determinehow Se is processed from water through diet to predators. This approach uses biogeochemical and physiological factors from laboratory and field studies and considers loading, speciation, transformation to particulate material, bioavailability, bioaccumulation in invertebrates, and trophic transfer to predators. Validation of the model is through data sets from 29 historic and recent field case studies of Se-exposed sites. The model links Se concentrations across media (water, particulate, tissue of different food web species). It can be used to forecast toxicity under different management or regulatory proposals or as a methodology for translating a fish-tissue (or other predator tissue) Se concentration guideline to a dissolved Se concentration. The model illustrates some critical aspects of implementing a tissue criterion: 1) the choice of fish species determines the food web through which Se should be modeled, 2) the choice of food web is critical because the particulate material to prey kinetics of bioaccumulation differs widely among invertebrates, 3) the characterization of the type and phase of particulate material is important to quantifying Se exposure to prey through the base of the food web, and 4) the metric describing partitioning between particulate material and dissolved Se concentrations allows determination of a site-specific dissolved Se concentration that would be responsible for that fish body burden in the specific environment. The linked approach illustrates that environmentally safe dissolved Se concentrations will differ among ecosystems depending on the ecological pathways and biogeochemical conditions in that system. Uncertainties and model sensitivities can be directly illustrated by varying exposure

  1. Small diversity effects on ocean primary production under environmental change in a diversity-resolving ocean ecosystem model

    DEFF Research Database (Denmark)

    Prowe, Friederike; Pahlow, M.; Dutkiewicz, S.

    2013-01-01

    Marine ecosystem models used to investigate how global change affects ocean ecosystems and their functioning typically omit pelagic diversity. Diversity, however, can affect functions such as primary production and their sensitivity to environmental changes. Using a global ocean ecosystem model...... the diversity effects on ecosystem functioning captured in ocean ecosystem models....

  2. Assimilation of satellite color observations in a coupled ocean GCM-ecosystem model

    Science.gov (United States)

    Sarmiento, Jorge L.

    1992-01-01

    Monthly average coastal zone color scanner (CZCS) estimates of chlorophyll concentration were assimilated into an ocean global circulation model(GCM) containing a simple model of the pelagic ecosystem. The assimilation was performed in the simplest possible manner, to allow the assessment of whether there were major problems with the ecosystem model or with the assimilation procedure. The current ecosystem model performed well in some regions, but failed in others to assimilate chlorophyll estimates without disrupting important ecosystem properties. This experiment gave insight into those properties of the ecosystem model that must be changed to allow data assimilation to be generally successful, while raising other important issues about the assimilation procedure.

  3. How important is diversity for capturing environmental-change responses in ecosystem models?

    DEFF Research Database (Denmark)

    Prowe, Friederike; Pahlow, M.; Dutkiewicz, S.

    2014-01-01

    Marine ecosystem models used to investigate how global change affects ocean ecosystems and their functioning typically omit pelagic plankton diversity. Diversity, however, may affect functions such as primary production and their sensitivity to environmental changes. Here we use a global ocean...... ecosystem model that explicitly resolves phytoplankton diversity by defining subtypes within four phytoplankton functional types (PFTs). We investigate the model's ability to capture diversity effects on primary production under environmental change. An idealized scenario with a sudden reduction in vertical...... in the model, for example via trade-offs or different PFTs, thus determines the diversity effects on ecosystem functioning captured in ocean ecosystem models....

  4. The Generalised Ecosystem Modelling Approach in Radiological Assessment

    International Nuclear Information System (INIS)

    Klos, Richard

    2008-03-01

    An independent modelling capability is required by SSI in order to evaluate dose assessments carried out in Sweden by, amongst others, SKB. The main focus is the evaluation of the long-term radiological safety of radioactive waste repositories for both spent fuel and low-level radioactive waste. To meet the requirement for an independent modelling tool for use in biosphere dose assessments, SSI through its modelling team CLIMB commissioned the development of a new model in 2004, a project to produce an integrated model of radionuclides in the landscape. The generalised ecosystem modelling approach (GEMA) is the result. GEMA is a modular system of compartments representing the surface environment. It can be configured, through water and solid material fluxes, to represent local details in the range of ecosystem types found in the past, present and future Swedish landscapes. The approach is generic but fine tuning can be carried out using local details of the surface drainage system. The modular nature of the modelling approach means that GEMA modules can be linked to represent large scale surface drainage features over an extended domain in the landscape. System change can also be managed in GEMA, allowing a flexible and comprehensive model of the evolving landscape to be constructed. Environmental concentrations of radionuclides can be calculated and the GEMA dose pathway model provides a means of evaluating the radiological impact of radionuclide release to the surface environment. This document sets out the philosophy and details of GEMA and illustrates the functioning of the model with a range of examples featuring the recent CLIMB review of SKB's SR-Can assessment

  5. The Generalised Ecosystem Modelling Approach in Radiological Assessment

    Energy Technology Data Exchange (ETDEWEB)

    Klos, Richard

    2008-03-15

    An independent modelling capability is required by SSI in order to evaluate dose assessments carried out in Sweden by, amongst others, SKB. The main focus is the evaluation of the long-term radiological safety of radioactive waste repositories for both spent fuel and low-level radioactive waste. To meet the requirement for an independent modelling tool for use in biosphere dose assessments, SSI through its modelling team CLIMB commissioned the development of a new model in 2004, a project to produce an integrated model of radionuclides in the landscape. The generalised ecosystem modelling approach (GEMA) is the result. GEMA is a modular system of compartments representing the surface environment. It can be configured, through water and solid material fluxes, to represent local details in the range of ecosystem types found in the past, present and future Swedish landscapes. The approach is generic but fine tuning can be carried out using local details of the surface drainage system. The modular nature of the modelling approach means that GEMA modules can be linked to represent large scale surface drainage features over an extended domain in the landscape. System change can also be managed in GEMA, allowing a flexible and comprehensive model of the evolving landscape to be constructed. Environmental concentrations of radionuclides can be calculated and the GEMA dose pathway model provides a means of evaluating the radiological impact of radionuclide release to the surface environment. This document sets out the philosophy and details of GEMA and illustrates the functioning of the model with a range of examples featuring the recent CLIMB review of SKB's SR-Can assessment

  6. Alternative ways of using field-based estimates to calibrate ecosystem models and their implications for ecosystem carbon cycle studies

    Science.gov (United States)

    Y. He; Q. Zhuang; A.D. McGuire; Y. Liu; M. Chen

    2013-01-01

    Model-data fusion is a process in which field observations are used to constrain model parameters. How observations are used to constrain parameters has a direct impact on the carbon cycle dynamics simulated by ecosystem models. In this study, we present an evaluation of several options for the use of observations inmodeling regional carbon dynamics and explore the...

  7. Calibration of two complex ecosystem models with different likelihood functions

    Science.gov (United States)

    Hidy, Dóra; Haszpra, László; Pintér, Krisztina; Nagy, Zoltán; Barcza, Zoltán

    2014-05-01

    The biosphere is a sensitive carbon reservoir. Terrestrial ecosystems were approximately carbon neutral during the past centuries, but they became net carbon sinks due to climate change induced environmental change and associated CO2 fertilization effect of the atmosphere. Model studies and measurements indicate that the biospheric carbon sink can saturate in the future due to ongoing climate change which can act as a positive feedback. Robustness of carbon cycle models is a key issue when trying to choose the appropriate model for decision support. The input parameters of the process-based models are decisive regarding the model output. At the same time there are several input parameters for which accurate values are hard to obtain directly from experiments or no local measurements are available. Due to the uncertainty associated with the unknown model parameters significant bias can be experienced if the model is used to simulate the carbon and nitrogen cycle components of different ecosystems. In order to improve model performance the unknown model parameters has to be estimated. We developed a multi-objective, two-step calibration method based on Bayesian approach in order to estimate the unknown parameters of PaSim and Biome-BGC models. Biome-BGC and PaSim are a widely used biogeochemical models that simulate the storage and flux of water, carbon, and nitrogen between the ecosystem and the atmosphere, and within the components of the terrestrial ecosystems (in this research the developed version of Biome-BGC is used which is referred as BBGC MuSo). Both models were calibrated regardless the simulated processes and type of model parameters. The calibration procedure is based on the comparison of measured data with simulated results via calculating a likelihood function (degree of goodness-of-fit between simulated and measured data). In our research different likelihood function formulations were used in order to examine the effect of the different model

  8. Model ecosystem approach to estimate community level effects of radiation

    Energy Technology Data Exchange (ETDEWEB)

    Masahiro, Doi; Nobuyuki, Tanaka; Shoichi, Fuma; Nobuyoshi, Ishii; Hiroshi, Takeda; Zenichiro, Kawabata [National Institute of Radiological Sciences, Environmental and Toxicological Sciences Research Group, Chiba (Japan)

    2004-07-01

    Mathematical computer model is developed to simulate the population dynamics and dynamic mass budgets of the microbial community realized as a self sustainable aquatic ecological system in the tube. Autotrophic algae, heterotrophic protozoa and sapro-trophic bacteria live symbiotically with inter-species' interactions as predator-prey relationship, competition for the common resource, autolysis of detritus and detritus-grazing food chain, etc. The simulation model is the individual-based parallel model, built in the demographic stochasticity, environmental stochasticity by dividing the aquatic environment into patches. Validity of the model is checked by the multifaceted data of the microcosm experiments. In the analysis, intrinsic parameters of umbrella endpoints (lethality, morbidity, reproductive growth, mutation) are manipulated at the individual level, and tried to find the population level, community level and ecosystem level disorders of ecologically crucial parameters (e.g. intrinsic growth rate, carrying capacity, variation, etc.) that related to the probability of population extinction. (author)

  9. Model ecosystem approach to estimate community level effects of radiation

    International Nuclear Information System (INIS)

    Masahiro, Doi; Nobuyuki, Tanaka; Shoichi, Fuma; Nobuyoshi, Ishii; Hiroshi, Takeda; Zenichiro, Kawabata

    2004-01-01

    Mathematical computer model is developed to simulate the population dynamics and dynamic mass budgets of the microbial community realized as a self sustainable aquatic ecological system in the tube. Autotrophic algae, heterotrophic protozoa and sapro-trophic bacteria live symbiotically with inter-species' interactions as predator-prey relationship, competition for the common resource, autolysis of detritus and detritus-grazing food chain, etc. The simulation model is the individual-based parallel model, built in the demographic stochasticity, environmental stochasticity by dividing the aquatic environment into patches. Validity of the model is checked by the multifaceted data of the microcosm experiments. In the analysis, intrinsic parameters of umbrella endpoints (lethality, morbidity, reproductive growth, mutation) are manipulated at the individual level, and tried to find the population level, community level and ecosystem level disorders of ecologically crucial parameters (e.g. intrinsic growth rate, carrying capacity, variation, etc.) that related to the probability of population extinction. (author)

  10. A descriptive ecosystem model - a strategy for model development during site investigations

    International Nuclear Information System (INIS)

    Loefgren, Anders

    2003-09-01

    This report describes a strategy for the development of a site descriptive model for the surface ecosystem on the potential deep repository sites. The surface ecosystem embraces many disciplines, and these have to be identified, described and integrated in order to construct a descriptive ecosystem model that describes and quantifies biotic and abiotic patterns and processes of importance for the ecosystem on the site. The descriptive model includes both present day conditions and historical information. The descriptive ecosystem model will be used to supply input data for the safety assessment and to serve as the baseline model for devising a monitoring program to detect short-term disturbances caused first by the site investigations and later by the construction of the deep repository. Furthermore, it will serve as a reference for future comparisons to determine more long-term effects or changes caused by the deep repository. The report adopts a non-site-specific approach focusing on the following aims: 1. To present and define the properties that will constitute the descriptive ecosystem model. 2. To present a methodology for determining those properties. 3. To describe and develop the framework for the descriptive ecosystem model by integrating the different properties. 4. To present vital data from other site descriptive models such as those for geology or hydrogeology that interacts with and affects the descriptive ecosystem model. The properties are described under four different sections: general physical properties of the landscape, the terrestrial system, the limnic system and the marine system. These headings are further subdivided into entities that integrate properties in relation to processes

  11. A descriptive ecosystem model - a strategy for model development during site investigations

    Energy Technology Data Exchange (ETDEWEB)

    Loefgren, Anders [Stockholm Univ. (Sweden). Dept. of Botany; Lindborg, Tobias [Swedish Nuclear Fuel and Waste Management Co., Stockholm (Sweden)

    2003-09-01

    This report describes a strategy for the development of a site descriptive model for the surface ecosystem on the potential deep repository sites. The surface ecosystem embraces many disciplines, and these have to be identified, described and integrated in order to construct a descriptive ecosystem model that describes and quantifies biotic and abiotic patterns and processes of importance for the ecosystem on the site. The descriptive model includes both present day conditions and historical information. The descriptive ecosystem model will be used to supply input data for the safety assessment and to serve as the baseline model for devising a monitoring program to detect short-term disturbances caused first by the site investigations and later by the construction of the deep repository. Furthermore, it will serve as a reference for future comparisons to determine more long-term effects or changes caused by the deep repository. The report adopts a non-site-specific approach focusing on the following aims: 1. To present and define the properties that will constitute the descriptive ecosystem model. 2. To present a methodology for determining those properties. 3. To describe and develop the framework for the descriptive ecosystem model by integrating the different properties. 4. To present vital data from other site descriptive models such as those for geology or hydrogeology that interacts with and affects the descriptive ecosystem model. The properties are described under four different sections: general physical properties of the landscape, the terrestrial system, the limnic system and the marine system. These headings are further subdivided into entities that integrate properties in relation to processes.

  12. ECOSYSTEM SERVICES AND BEYOND: INTEGRATION OF ECOSYSTEM SCIENCE AND MULTIMEDIA EXPOSURE MODELING FOR ENVIRONMENTAL PROTECTION

    Science.gov (United States)

    Decision-making for ecosystem protection and resource management requires an integrative science and technology applied with a sufficiently comprehensive systems approach. Single media (e.g., air, soil and water) approaches that evaluate aspects of an ecosystem in a stressor-by-...

  13. Studies on 14C labelled chlorpyrifos in model marine ecosystem

    International Nuclear Information System (INIS)

    Pandit, G.G.; Mohan Rao, A.M.; Kale, S.P.; Murthy, N.B.K.; Raghu, K.

    1997-01-01

    Chlorpyrifos is one of the widely used organophosphorus insecticides in tropical countries. Experiments were conducted with 14 C labelled chlorpyrifos to study the distribution of this compound in model marine ecosystem. Less than 50 per cent of the applied activity remained in water in 24 h. Major portion of the applied chlorpyrifos (about 4.2 % residue per g) accumulated into the clams with sediment containing a maximum of 5 to 6 per cent of applied compound. No degradation of chlorpyrifos was observed in water or sediment samples. However, metabolic products were formed in clams. (author). 4 refs., 3 tabs

  14. A set of nutrient limitations trigger yeast cell death in a nitrogen-dependent manner during wine alcoholic fermentation.

    Directory of Open Access Journals (Sweden)

    Camille Duc

    Full Text Available Yeast cell death can occur during wine alcoholic fermentation. It is generally considered to result from ethanol stress that impacts membrane integrity. This cell death mainly occurs when grape musts processing reduces lipid availability, resulting in weaker membrane resistance to ethanol. However the mechanisms underlying cell death in these conditions remain unclear. We examined cell death occurrence considering yeast cells ability to elicit an appropriate response to a given nutrient limitation and thus survive starvation. We show here that a set of micronutrients (oleic acid, ergosterol, pantothenic acid and nicotinic acid in low, growth-restricting concentrations trigger cell death in alcoholic fermentation when nitrogen level is high. We provide evidence that nitrogen signaling is involved in cell death and that either SCH9 deletion or Tor inhibition prevent cell death in several types of micronutrient limitation. Under such limitations, yeast cells fail to acquire any stress resistance and are unable to store glycogen. Unexpectedly, transcriptome analyses did not reveal any major changes in stress genes expression, suggesting that post-transcriptional events critical for stress response were not triggered by micronutrient starvation. Our data point to the fact that yeast cell death results from yeast inability to trigger an appropriate stress response under some conditions of nutrient limitations most likely not encountered by yeast in the wild. Our conclusions provide a novel frame for considering both cell death and the management of nutrients during alcoholic fermentation.

  15. Diagnosis & Correction of Soil Nutrient Limitations in Intensively managed southern pine forests

    Energy Technology Data Exchange (ETDEWEB)

    University of Florida

    2002-10-25

    Forest productivity is one manner to sequester carbon and it is a renewable energy source. Likewise, efficient use of fertilization can be a significant energy savings. To date, site-specific use of fertilization for the purpose of maximizing forest productivity has not been well developed. Site evaluation of nutrient deficiencies is primarily based on empirical approaches to soil testing and plot fertilizer tests with little consideration for soil water regimes and contributing site factors. This project uses mass flow diffusion theory in a modeling context, combined with process level knowledge of soil chemistry, to evaluate nutrient bioavailability to fast-growing juvenile forest stands growing on coastal plain Spodosols of the southeastern U.S. The model is not soil or site specific and should be useful for a wide range of soil management/nutrient management conditions. In order to use the model, field data of fast-growing southern pine needed to be measured and used in the validation of the model. The field aspect of the study was mainly to provide data that could be used to verify the model. However, we learned much about the growth and development of fast growing loblolly. Carbon allocation patterns, root shoot relationships and leaf area root relationships proved to be new, important information. The Project Objectives were to: (1) Develop a mechanistic nutrient management model based on the COMP8 uptake model. (2) Collect field data that could be used to verify and test the model. (3) Model testing.

  16. Modeling net ecosystem carbon exchange of alpine grasslands with a satellite-driven model.

    Directory of Open Access Journals (Sweden)

    Wei Yan

    Full Text Available Estimate of net ecosystem carbon exchange (NEE between the atmosphere and terrestrial ecosystems, the balance of gross primary productivity (GPP and ecosystem respiration (Reco has significant importance for studying the regional and global carbon cycles. Using models driven by satellite data and climatic data is a promising approach to estimate NEE at regional scales. For this purpose, we proposed a semi-empirical model to estimate NEE in this study. In our model, the component GPP was estimated with a light response curve of a rectangular hyperbola. The component Reco was estimated with an exponential function of soil temperature. To test the feasibility of applying our model at regional scales, the temporal variations in the model parameters derived from NEE observations in an alpine grassland ecosystem on Tibetan Plateau were investigated. The results indicated that all the inverted parameters exhibit apparent seasonality, which is in accordance with air temperature and canopy phenology. In addition, all the parameters have significant correlations with the remote sensed vegetation indexes or environment temperature. With parameters estimated with these correlations, the model illustrated fair accuracy both in the validation years and at another alpine grassland ecosystem on Tibetan Plateau. Our results also indicated that the model prediction was less accurate in drought years, implying that soil moisture is an important factor affecting the model performance. Incorporating soil water content into the model would be a critical step for the improvement of the model.

  17. How to misinterpret photosynthesis measurements and develop incorrect ecosystem models

    Science.gov (United States)

    Prentice, Iain Colin

    2017-04-01

    It is becoming widely accepted than current land ecosystem models (dynamic global vegetation models and land-surface models) rest on shaky foundations and are in need of rebuilding, taking advantage of huge data resources that were hardly conceivable when these models were first developed. It has also become almost a truism that next-generation model development should involve observationalists, experimentalists and modellers working more closely together. What is currently lacking, however, is open discussion of specific problems in the structure of current models, and how they might have arisen. Such a discussion is important if the same mistakes are not to be perpetuated in a new generation of models. I will focus on the central processes governing leaf-level gas exchange, which powers the land carbon and water cycles. I will show that a broad area of confusion exists - as much in the empirical ecophysiological literature as in modelling research - concerning the interpretation of gas-exchange measurements and (especially) their scaling up from the narrow temporal and spatial scales of laboratory measurements to the broad-scale research questions linked to global environmental change. In particular, I will provide examples (drawing on a variety of published and unpublished observations) that illustrate the benefits of taking a "plant-centred" view, showing how consideration of optimal acclimation challenges many (often untstated) assumptions about the relationship of plant and ecosystem processes to environmental variation. (1) Photosynthesis is usually measured at light saturation (implying Rubisco limitation), leading to temperature and CO2 responses that are completely different from those of gross primary production (GPP) under field conditions. (2) The actual rate of electron transport under field conditions depends strongly on the intrinsic quantum efficiency, which is temperature-independent (within a broad range) and unrelated to the maximum electron

  18. Simulation modelling of fynbos ecosystems: Systems analysis and conceptual models

    CSIR Research Space (South Africa)

    Kruger, FJ

    1985-03-01

    Full Text Available -animal interactions. An additional two models, which expand aspects of the FYNBOS model, are described: a model for simulating canopy processes; and a Fire Recovery Simulator. The canopy process model will simulate ecophysiological processes in more detail than FYNBOS...

  19. The EBM-DPSER conceptual model: integrating ecosystem services into the DPSIR framework.

    Directory of Open Access Journals (Sweden)

    Christopher R Kelble

    Full Text Available There is a pressing need to integrate biophysical and human dimensions science to better inform holistic ecosystem management supporting the transition from single species or single-sector management to multi-sector ecosystem-based management. Ecosystem-based management should focus upon ecosystem services, since they reflect societal goals, values, desires, and benefits. The inclusion of ecosystem services into holistic management strategies improves management by better capturing the diversity of positive and negative human-natural interactions and making explicit the benefits to society. To facilitate this inclusion, we propose a conceptual model that merges the broadly applied Driver, Pressure, State, Impact, and Response (DPSIR conceptual model with ecosystem services yielding a Driver, Pressure, State, Ecosystem service, and Response (EBM-DPSER conceptual model. The impact module in traditional DPSIR models focuses attention upon negative anthropomorphic impacts on the ecosystem; by replacing impacts with ecosystem services the EBM-DPSER model incorporates not only negative, but also positive changes in the ecosystem. Responses occur as a result of changes in ecosystem services and include inter alia management actions directed at proactively altering human population or individual behavior and infrastructure to meet societal goals. The EBM-DPSER conceptual model was applied to the Florida Keys and Dry Tortugas marine ecosystem as a case study to illustrate how it can inform management decisions. This case study captures our system-level understanding and results in a more holistic representation of ecosystem and human society interactions, thus improving our ability to identify trade-offs. The EBM-DPSER model should be a useful operational tool for implementing EBM, in that it fully integrates our knowledge of all ecosystem components while focusing management attention upon those aspects of the ecosystem most important to human society

  20. The EBM-DPSER Conceptual Model: Integrating Ecosystem Services into the DPSIR Framework

    Science.gov (United States)

    Kelble, Christopher R.; Loomis, Dave K.; Lovelace, Susan; Nuttle, William K.; Ortner, Peter B.; Fletcher, Pamela; Cook, Geoffrey S.; Lorenz, Jerry J.; Boyer, Joseph N.

    2013-01-01

    There is a pressing need to integrate biophysical and human dimensions science to better inform holistic ecosystem management supporting the transition from single species or single-sector management to multi-sector ecosystem-based management. Ecosystem-based management should focus upon ecosystem services, since they reflect societal goals, values, desires, and benefits. The inclusion of ecosystem services into holistic management strategies improves management by better capturing the diversity of positive and negative human-natural interactions and making explicit the benefits to society. To facilitate this inclusion, we propose a conceptual model that merges the broadly applied Driver, Pressure, State, Impact, and Response (DPSIR) conceptual model with ecosystem services yielding a Driver, Pressure, State, Ecosystem service, and Response (EBM-DPSER) conceptual model. The impact module in traditional DPSIR models focuses attention upon negative anthropomorphic impacts on the ecosystem; by replacing impacts with ecosystem services the EBM-DPSER model incorporates not only negative, but also positive changes in the ecosystem. Responses occur as a result of changes in ecosystem services and include inter alia management actions directed at proactively altering human population or individual behavior and infrastructure to meet societal goals. The EBM-DPSER conceptual model was applied to the Florida Keys and Dry Tortugas marine ecosystem as a case study to illustrate how it can inform management decisions. This case study captures our system-level understanding and results in a more holistic representation of ecosystem and human society interactions, thus improving our ability to identify trade-offs. The EBM-DPSER model should be a useful operational tool for implementing EBM, in that it fully integrates our knowledge of all ecosystem components while focusing management attention upon those aspects of the ecosystem most important to human society and does so within

  1. Prototyping an online wetland ecosystem services model using open model sharing standards

    Science.gov (United States)

    Feng, M.; Liu, S.; Euliss, N.H.; Young, Caitlin; Mushet, D.M.

    2011-01-01

    Great interest currently exists for developing ecosystem models to forecast how ecosystem services may change under alternative land use and climate futures. Ecosystem services are diverse and include supporting services or functions (e.g., primary production, nutrient cycling), provisioning services (e.g., wildlife, groundwater), regulating services (e.g., water purification, floodwater retention), and even cultural services (e.g., ecotourism, cultural heritage). Hence, the knowledge base necessary to quantify ecosystem services is broad and derived from many diverse scientific disciplines. Building the required interdisciplinary models is especially challenging as modelers from different locations and times may develop the disciplinary models needed for ecosystem simulations, and these models must be identified and made accessible to the interdisciplinary simulation. Additional difficulties include inconsistent data structures, formats, and metadata required by geospatial models as well as limitations on computing, storage, and connectivity. Traditional standalone and closed network systems cannot fully support sharing and integrating interdisciplinary geospatial models from variant sources. To address this need, we developed an approach to openly share and access geospatial computational models using distributed Geographic Information System (GIS) techniques and open geospatial standards. We included a means to share computational models compliant with Open Geospatial Consortium (OGC) Web Processing Services (WPS) standard to ensure modelers have an efficient and simplified means to publish new models. To demonstrate our approach, we developed five disciplinary models that can be integrated and shared to simulate a few of the ecosystem services (e.g., water storage, waterfowl breeding) that are provided by wetlands in the Prairie Pothole Region (PPR) of North America.

  2. Innovation ecosystem model for commercialization of research results

    Directory of Open Access Journals (Sweden)

    Vlăduţ Gabriel

    2017-07-01

    Full Text Available Innovation means Creativity and Added value recognise by the market. The first step in creating a sustainable commercialization of research results, Technological Transfer – TT mechanism, on one hand is to define the “technology” which will be transferred and on other hand to define the context in which the TT mechanism work, the ecosystem. The focus must be set on technology as an entity, not as a science or a study of the practical industrial arts and certainly not any specific applied science. The transfer object, the technology, must rely on a subjectively determined but specifiable set of processes and products. Focusing on the product is not sufficient to the transfer and diffusion of technology. It is not merely the product that is transferred but also knowledge of its use and application. The innovation ecosystem model brings together new companies, experienced business leaders, researchers, government officials, established technology companies, and investors. This environment provides those new companies with a wealth of technical expertise, business experience, and access to capital that supports innovation in the early stages of growth.

  3. ESTIMAP: A GIS-BASED MODEL TO MAP ECOSYSTEM SERVICES IN THE EUROPEAN UNION

    Directory of Open Access Journals (Sweden)

    G. Zulian

    2014-04-01

    Full Text Available Policies of the European Union which affect the use or protection of natural resources increasingly need spatial data on the supply, the flow and the demand of ecosystem services. The model ESTIMAP was developed to this purpose. ESTIMAP departs from land cover and land use maps to which it adds other spatial information with the objective to map various ecosystem services. This study introduces the ESTIMAP map as tool to support the mapping and modelling of ecosystem services at European scale. Examples are provided for three regulating ecosystem services, air quality regulation, coastal protection, and pollination and one cultural ecosystem services, recreation. 

  4. Modelling the ecosystem effects of nitrogen deposition: Model of Ecosystem Retention and Loss of Inorganic Nitrogen (MERLIN

    Directory of Open Access Journals (Sweden)

    B. J. Cosby

    1997-01-01

    Full Text Available A catchment-scale mass-balance model of linked carbon and nitrogen cycling in ecosystems has been developed for simulating leaching losses of inorganic nitrogen. The model (MERLIN considers linked biotic and abiotic processes affecting the cycling and storage of nitrogen. The model is aggregated in space and time and contains compartments intended to be observable and/or interpretable at the plot or catchment scale. The structure of the model includes the inorganic soil, a plant compartment and two soil organic compartments. Fluxes in and out of the ecosystem and between compartments are regulated by atmospheric deposition, hydrological discharge, plant uptake, litter production, wood production, microbial immobilization, mineralization, nitrification, and denitrification. Nitrogen fluxes are controlled by carbon productivity, the C:N ratios of organic compartments and inorganic nitrogen in soil solution. Inputs required are: 1 temporal sequences of carbon fluxes and pools- 2 time series of hydrological discharge through the soils, 3 historical and current external sources of inorganic nitrogen; 4 current amounts of nitrogen in the plant and soil organic compartments; 5 constants specifying the nitrogen uptake and immobilization characteristics of the plant and soil organic compartments; and 6 soil characteristics such as depth, porosity, bulk density, and anion/cation exchange constants. Outputs include: 1 concentrations and fluxes of NO3 and NH4 in soil solution and runoff; 2 total nitrogen contents of the organic and inorganic compartments; 3 C:N ratios of the aggregated plant and soil organic compartments; and 4 rates of nitrogen uptake and immobilization and nitrogen mineralization. The behaviour of the model is assessed for a combination of land-use change and nitrogen deposition scenarios in a series of speculative simulations. The results of the simulations are in broad agreement with observed and hypothesized behaviour of nitrogen

  5. Protein Redox Dynamics During Light-to-Dark Transitions in Cyanobacteria and Impacts Due to Nutrient Limitation

    Directory of Open Access Journals (Sweden)

    Aaron T Wright

    2014-07-01

    Full Text Available Protein redox chemistry constitutes a major void in knowledge pertaining to photoautotrophic system regulation and signaling processes. We have employed a chemical biology approach to analyze redox sensitive proteins in live Synechococcus sp. PCC 7002 cells in both light and dark periods, and to understand how cellular redox balance is disrupted during nutrient perturbation. The present work identified 300 putative redox-sensitive proteins that are involved in the generation of reductant, macromolecule synthesis, and carbon flux through central metabolic pathways, and may be involved in cell signaling and response mechanisms. Furthermore, our research suggests that dynamic redox changes in response to specific nutrient limitations, including carbon and nitrogen limitations, contribute to the regulatory changes driven by a shift from light to dark. Taken together, these results contribute to a high-level understanding of post-translational mechanisms regulating flux distributions and suggest potential metabolic engineering targets for redirecting carbon towards biofuel precursors.

  6. Role of nutrient limitation and stationary-phase existence in Klebsiella pneumoniae biofilm resistance to ampicillin and ciprofloxacin.

    Science.gov (United States)

    Anderl, Jeff N; Zahller, Jeff; Roe, Frank; Stewart, Philip S

    2003-04-01

    Biofilms formed by Klebsiella pneumoniae resisted killing during prolonged exposure to ampicillin or ciprofloxacin even though these agents have been shown to penetrate bacterial aggregates. Bacteria dispersed from biofilms into medium quickly regained most of their susceptibility. Experiments with free-floating bacteria showed that stationary-phase bacteria were protected from killing by either antibiotic, especially when the test was performed in medium lacking carbon and nitrogen sources. These results suggested that the antibiotic tolerance of biofilm bacteria could be explained by nutrient limitation in the biofilm leading to stationary-phase existence of at least some of the cells in the biofilm. This mechanism was supported by experimental characterization of nutrient availability and growth status in biofilms. The average specific growth rate of bacteria in biofilms was only 0.032 h(-1) compared to the specific growth rate of planktonic bacteria of 0.59 h(-1) measured in the same medium. Glucose did not penetrate all the way through the biofilm, and oxygen was shown to penetrate only into the upper 100 micro m. The specific catalase activity was elevated in biofilm bacteria to a level similar to that of stationary-phase planktonic cells. Transmission electron microscopy revealed that bacteria were affected by ampicillin near the periphery of the biofilm but were not affected in the interior. Taken together, these results indicate that K. pneumoniae in this system experience nutrient limitation locally within the biofilm, leading to zones in which the bacteria enter stationary phase and are growing slowly or not at all. In these inactive regions, bacteria are less susceptible to killing by antibiotics.

  7. Modelling benthic biophysical drivers of ecosystem structure and biogeochemical response

    Science.gov (United States)

    Stephens, Nicholas; Bruggeman, Jorn; Lessin, Gennadi; Allen, Icarus

    2016-04-01

    The fate of carbon deposited at the sea floor is ultimately decided by biophysical drivers that control the efficiency of remineralisation and timescale of carbon burial in sediments. Specifically, these drivers include bioturbation through ingestion and movement, burrow-flushing and sediment reworking, which enhance vertical particulate transport and solute diffusion. Unfortunately, these processes are rarely satisfactorily resolved in models. To address this, a benthic model that explicitly describes the vertical position of biology (e.g., habitats) and biogeochemical processes is presented that includes biological functionality and biogeochemical response capturing changes in ecosystem structure, benthic-pelagic fluxes and biodiversity on inter-annual timescales. This is demonstrated by the model's ability to reproduce temporal variability in benthic infauna, vertical pore water nutrients and pelagic-benthic solute fluxes compared to in-situ data. A key advance is the replacement of bulk parameterisation of bioturbation by explicit description of the bio-physical processes responsible. This permits direct comparison with observations and determination of key parameters in experiments. Crucially, the model resolves the two-way interaction between sediment biogeochemistry and ecology, allowing exploration of the benthic response to changing environmental conditions, the importance of infaunal functional traits in shaping benthic ecological structure and the feedback the resulting bio-physical processes exert on pore water nutrient profiles. The model is actively being used to understand shelf sea carbon cycling, the response of the benthos to climatic change, food provision and other societal benefits.

  8. 14C Carbofuran residue in rice-fish ecosystem model

    International Nuclear Information System (INIS)

    Sumatra, M.; Soekarna, D.; Suhanda; Kuswadi, A.N.

    1988-01-01

    14-C-carbofuran in the form of 14-C-Furada 3G was applied with doses of 0, 2, and 4 g/m2 to a rice-fish ecosystem model consisting of water, soil, rice, plant, and fish (Cyprinus carpio) in tanks of the size 1 m length, 1 m width, and 0.5 m depth. 14-C-carbofuran was released from 14-C-Furadan 3G, entered into the water, absorbed by plant root, and then distributed into the whole plant. A part of the 14-C-carbofuran was absorbed and retained by soil. In both doses of 4 and 2 g/m2, the 14-C-Furadan 3G was toxic to Cyprinus carpio under this experiment condition. (author). 5 refs, 5 figs, 6 tabs

  9. Spatial Distribution of Hydrologic Ecosystem Service Estimates: Comparing Two Models

    Science.gov (United States)

    Dennedy-Frank, P. J.; Ghile, Y.; Gorelick, S.; Logsdon, R. A.; Chaubey, I.; Ziv, G.

    2014-12-01

    We compare estimates of the spatial distribution of water quantity provided (annual water yield) from two ecohydrologic models: the widely-used Soil and Water Assessment Tool (SWAT) and the much simpler water models from the Integrated Valuation of Ecosystem Services and Tradeoffs (InVEST) toolbox. These two models differ significantly in terms of complexity, timescale of operation, effort, and data required for calibration, and so are often used in different management contexts. We compare two study sites in the US: the Wildcat Creek Watershed (2083 km2) in Indiana, a largely agricultural watershed in a cold aseasonal climate, and the Upper Upatoi Creek Watershed (876 km2) in Georgia, a mostly forested watershed in a temperate aseasonal climate. We evaluate (1) quantitative estimates of water yield to explore how well each model represents this process, and (2) ranked estimates of water yield to indicate how useful the models are for management purposes where other social and financial factors may play significant roles. The SWAT and InVEST models provide very similar estimates of the water yield of individual subbasins in the Wildcat Creek Watershed (Pearson r = 0.92, slope = 0.89), and a similar ranking of the relative water yield of those subbasins (Spearman r = 0.86). However, the two models provide relatively different estimates of the water yield of individual subbasins in the Upper Upatoi Watershed (Pearson r = 0.25, slope = 0.14), and very different ranking of the relative water yield of those subbasins (Spearman r = -0.10). The Upper Upatoi watershed has a significant baseflow contribution due to its sandy, well-drained soils. InVEST's simple seasonality terms, which assume no change in storage over the time of the model run, may not accurately estimate water yield processes when baseflow provides such a strong contribution. Our results suggest that InVEST users take care in situations where storage changes are significant.

  10. Ecosystem-based fishery management: a critical review of concepts and ecological economic models

    DEFF Research Database (Denmark)

    Nguyen, Thanh Viet

      An ecosystem approach means different things to different people. As a result the concept of ecosystem-based fishery management is evolving and it has no universal definition or consistent application. As regards ecosystem modeling, most economic models of fishery ignore the linkages to lower...... trophic levels. In particular, environmental data and other bottom-up information is widely disregarded. The objective of this paper is to provide a critical review of concepts and ecological economic models relating to ecosystem-based fishery management....

  11. Comparing the Applicability of Commonly Used Hydrological Ecosystem Services Models for Integrated Decision-Support

    Directory of Open Access Journals (Sweden)

    Anna Lüke

    2018-01-01

    Full Text Available Different simulation models are used in science and practice in order to incorporate hydrological ecosystem services in decision-making processes. This contribution compares three simulation models, the Soil and Water Assessment Tool, a traditional hydrological model and two ecosystem services models, the Integrated Valuation of Ecosystem Services and Trade-offs model and the Resource Investment Optimization System model. The three models are compared on a theoretical and conceptual basis as well in a comparative case study application. The application of the models to a study area in Nicaragua reveals that a practical benefit to apply these models for different questions in decision-making generally exists. However, modelling of hydrological ecosystem services is associated with a high application effort and requires input data that may not always be available. The degree of detail in temporal and spatial variability in ecosystem service provision is higher when using the Soil and Water Assessment Tool compared to the two ecosystem service models. In contrast, the ecosystem service models have lower requirements on input data and process knowledge. A relationship between service provision and beneficiaries is readily produced and can be visualized as a model output. The visualization is especially useful for a practical decision-making context.

  12. An integrated model of soil, hydrology, and vegetation for carbon dynamics in wetland ecosystems

    Science.gov (United States)

    Yu Zhang; Changsheng Li; Carl C. Trettin; Harbin Li; Ge Sun

    2002-01-01

    Wetland ecosystems are an important component in global carbon (C) cycles and may exert a large influence on global clinlate change. Predictions of C dynamics require us to consider interactions among many critical factors of soil, hydrology, and vegetation. However, few such integrated C models exist for wetland ecosystems. In this paper, we report a simulation model...

  13. Exploring, exploiting and evolving diversity of aquatic ecosystem models: a community perspective

    NARCIS (Netherlands)

    Janssen, A.B.G.; Gerla, D.J.

    2015-01-01

    Here, we present a community perspective on how to explore, exploit and evolve the diversity in aquatic ecosystem models. These models play an important role in understanding the functioning of aquatic ecosystems, filling in observation gaps and developing effective strategies for water quality

  14. Kinetics of growth and lipids accumulation in Chlorella vulgaris during batch heterotrophic cultivation: Effect of different nutrient limitation strategies.

    Science.gov (United States)

    Sakarika, Myrsini; Kornaros, Michael

    2017-11-01

    The present study aimed at: (1) determining the effect of sulfur addition on biomass growth and (2) assessing the effect of sulfur, phosphorus and nitrogen limitation on lipid accumulation by C. vulgaris SAG 211-11b. The sulfur cellular content was more than two-fold higher under nitrogen and phosphorus limitation (0.52% and 0.54%ww -1 , respectively) compared to sulfur requirements (0.20%ww -1 ) under sulfur limiting conditions. The nitrogen needs are significantly lower (2.81-3.35%ww -1 ) when compared to other microalgae and become 23% lower under nitrogen or phosphorus limitation. The microalga exhibited substrate inhibition above 30gL -1 initial glucose concentration. Sulfur limitation had the most significant effect on lipid accumulation, resulting in maximum total lipid content of 53.43±3.93%gg DW -1 . In addition to enhancing lipid productivity, adopting the optimal nutrient limitation strategy can result in cost savings by avoiding unnecessary nutrient additions and eliminate the environmental burden due to wasted resources. Copyright © 2017 Elsevier Ltd. All rights reserved.

  15. Ecosystem model of the entire Beaufort Sea marine ecosystem: a tool for assessing food-web structure and ecosystem changes from 1970 to 2014

    Science.gov (United States)

    Suprenand, P. M.; Hoover, C.

    2016-02-01

    The Beaufort Sea coastal-marine ecosystem is approximately a 476,000 km2 area in the Arctic Ocean, which extends from -112.5 to -158° longitude to 67.5 to 75° latitude. Within this Arctic Ocean area the United States (Alaskan) indigenous communities of Barrow, Kaktovik, and Nuiqsut, and the Canadian (Northwest Territories) indigenous communities of Aklavik, Inuvik, Tuktoyaktuk, Paulatuk, Ulukhaktok, and Sachs Harbour, subsist by harvesting marine mammals, fish, and invertebrates from the Beaufort Sea to provide the majority of their community foods annually. The ecosystem in which the indigenous communities harvest is considered a polar habitat that includes many specialized species, such as polar bears that rely on sea-ice for foraging activities and denning, or ice algae that are attached to the cryosphere. However, the polar habitat has been experiencing a diminishing sea-ice extent, age, and seasonal duration, with concomitant increases in sea surface temperatures (SSTs), since the 1970s. Changes in sea-ice and SST have consequences to the Beaufort Sea coastal-marine ecosystem, which includes animal habitat losses, alterations to trophodynamics, and impacts to subsistence community harvesting. The present study was aimed at capturing trophodynamic changes in the Beaufort Sea coastal-marine ecosystem from 1970 to 2014 using a fitted spatial-temporal model (Ecopath with Ecosim and Ecospace) that utilizes forcing and mediation functions to describe animal/trophodynamic relationships with sea-ice and sea surface temperature, as well as individual community harvesting efforts. Model outputs reveals similar trends in animals population changes (e.g., increasing bowhead whale stock), changes in apex predator diets (e.g., polar bears eating less ringed seal), and changes in animal distributions (e.g., polar bears remaining closer to land over time). The Beaufort Sea model is a dynamic tool for Arctic Ocean natural resource management in the years to come.

  16. 'Ecological value added' in an integrated ecosystem-economy model. An indicator for sustainability

    International Nuclear Information System (INIS)

    Kratena, Kurt

    2004-01-01

    This paper sets up an input-output system of the relevant ecosystem flows that determine the carbon cycle in the global ecosystem. Introducing energy as the value added component in the ecosystem allows to calculate ecosystem prices expressed in 'energy values'. Linking the ecosystem with the economy in an integrated input-output model then allows to calculate prices of economic activities and of ecosystem activities. In analogy to the 'Ecological Footprint', where productive land is needed to absorb anthropogenic emissions, in this integrated input-output model additional carbon sinks are introduced for emission absorption. These carbon sinks need solar energy input, i.e. 'ecological value added'. Emission absorption as well as GDP therefore become activities valued in the numeraire of the integrated system, i.e.'energy values'. From that sustainability indicators can be derived

  17. Forest Ecosystem Dynamics Assessment and Predictive Modelling in Eastern Himalaya

    Science.gov (United States)

    Kushwaha, S. P. S.; Nandy, S.; Ahmad, M.; Agarwal, R.

    2011-09-01

    This study focused on the forest ecosystem dynamics assessment and predictive modelling deforestation and forest cover prediction in a part of north-eastern India i.e. forest areas along West Bengal, Bhutan, Arunachal Pradesh and Assam border in Eastern Himalaya using temporal satellite imagery of 1975, 1990 and 2009 and predicted forest cover for the period 2028 using Cellular Automata Markov Modedel (CAMM). The exercise highlighted large-scale deforestation in the study area during 1975-1990 as well as 1990-2009 forest cover vectors. A net loss of 2,334.28 km2 forest cover was noticed between 1975 and 2009, and with current rate of deforestation, a forest area of 4,563.34 km2 will be lost by 2028. The annual rate of deforestation worked out to be 0.35 and 0.78% during 1975-1990 and 1990-2009 respectively. Bamboo forest increased by 24.98% between 1975 and 2009 due to opening up of the forests. Forests in Kokrajhar, Barpeta, Darrang, Sonitpur, and Dhemaji districts in Assam were noticed to be worst-affected while Lower Subansiri, West and East Siang, Dibang Valley, Lohit and Changlang in Arunachal Pradesh were severely affected. Among different forest types, the maximum loss was seen in case of sal forest (37.97%) between 1975 and 2009 and is expected to deplete further to 60.39% by 2028. The tropical moist deciduous forest was the next category, which decreased from 5,208.11 km2 to 3,447.28 (33.81%) during same period with further chances of depletion to 2,288.81 km2 (56.05%) by 2028. It noted progressive loss of forests in the study area between 1975 and 2009 through 1990 and predicted that, unless checked, the area is in for further depletion of the invaluable climax forests in the region, especially sal and moist deciduous forests. The exercise demonstrated high potential of remote sensing and geographic information system for forest ecosystem dynamics assessment and the efficacy of CAMM to predict the forest cover change.

  18. FOREST ECOSYSTEM DYNAMICS ASSESSMENT AND PREDICTIVE MODELLING IN EASTERN HIMALAYA

    Directory of Open Access Journals (Sweden)

    S. P. S. Kushwaha

    2012-09-01

    Full Text Available This study focused on the forest ecosystem dynamics assessment and predictive modelling deforestation and forest cover prediction in a part of north-eastern India i.e. forest areas along West Bengal, Bhutan, Arunachal Pradesh and Assam border in Eastern Himalaya using temporal satellite imagery of 1975, 1990 and 2009 and predicted forest cover for the period 2028 using Cellular Automata Markov Modedel (CAMM. The exercise highlighted large-scale deforestation in the study area during 1975–1990 as well as 1990–2009 forest cover vectors. A net loss of 2,334.28 km2 forest cover was noticed between 1975 and 2009, and with current rate of deforestation, a forest area of 4,563.34 km2 will be lost by 2028. The annual rate of deforestation worked out to be 0.35 and 0.78% during 1975–1990 and 1990–2009 respectively. Bamboo forest increased by 24.98% between 1975 and 2009 due to opening up of the forests. Forests in Kokrajhar, Barpeta, Darrang, Sonitpur, and Dhemaji districts in Assam were noticed to be worst-affected while Lower Subansiri, West and East Siang, Dibang Valley, Lohit and Changlang in Arunachal Pradesh were severely affected. Among different forest types, the maximum loss was seen in case of sal forest (37.97% between 1975 and 2009 and is expected to deplete further to 60.39% by 2028. The tropical moist deciduous forest was the next category, which decreased from 5,208.11 km2 to 3,447.28 (33.81% during same period with further chances of depletion to 2,288.81 km2 (56.05% by 2028. It noted progressive loss of forests in the study area between 1975 and 2009 through 1990 and predicted that, unless checked, the area is in for further depletion of the invaluable climax forests in the region, especially sal and moist deciduous forests. The exercise demonstrated high potential of remote sensing and geographic information system for forest ecosystem dynamics assessment and the efficacy of CAMM to predict the forest cover change.

  19. Modeling of Heavy Metal Transformation in Soil Ecosystem

    Science.gov (United States)

    Kalinichenko, Kira; Nikovskaya, Galina N.

    2017-04-01

    The intensification of industrial activity leads to an increase in heavy metals pollution of soils. In our opinion, sludge from biological treatment of municipal waste water, stabilized under aerobic-anaerobic conditions (commonly known as biosolid), may be considered as concentrate of natural soil. In their chemical, physical and chemical and biological properties these systems are similar gel-like nanocomposites. These contain microorganisms, humic substances, clay, clusters of nanoparticles of heavy metal compounds, and so on involved into heteropolysaccharides matrix. It is known that microorganisms play an important role in the transformation of different nature substances in soil and its health maintenance. The regularities of transformation of heavy metal compounds in soil ecosystem were studied at the model of biosolid. At biosolid swelling its structure changing (gel-sol transition, weakening of coagulation contacts between metal containing nanoparticles, microbial cells and metabolites, loosening and even destroying of the nanocomposite structure) can occur [1, 2]. The promotion of the sludge heterotrophic microbial activities leads to solubilization of heavy metal compounds in the system. The microbiological process can be realized in alcaligeneous or acidogeneous regimes in dependence on the type of carbon source and followed by the synthesis of metabolites with the properties of flocculants and heavy metals extragents [3]. In this case the heavy metals solubilization (bioleaching) in the form of nanoparticles of hydroxycarbonate complexes or water soluble complexes with oxycarbonic acids is observed. Under the action of biosolid microorganisms the heavy metals-oxycarbonic acids complexes can be transformed (catabolised) into nano-sizing heavy metals- hydroxycarbonates complexes. These ecologically friendly complexes and microbial heteropolysaccharides are able to interact with soil colloids, stay in the top soil profile, and improve soil structure due

  20. CCIEA data and model output - California Current Integrated Ecosystem Assessment

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The California Current Integrated Ecosystem Assessment (CCIEA) is a joint project between staff at the NWFSC, SWFSC, NMML, ONMS, and WCRO to provide managers and...

  1. Changes in Arctic and Boreal ecosystems of North America: Integrating Recent Results from the Field, Remote Sensing and Ecosystem Models

    Science.gov (United States)

    Goetz, S. J.; Rogers, B. M.; Mack, M. C.; Goulden, M.; Pastick, N. J.; Berner, L. T.; Fisher, J.

    2017-12-01

    The Arctic and boreal forest biomes have global significance in terms of climate feedbacks associated with land surface interactions with the atmosphere. Changes in Arctic tundra and boreal forest ecosystem productivity and fire disturbance feedbacks have been well documented in recent years, but findings are often only locally relevant and are sometimes inconsistent among research teams. Part of these inconsistencies lie in utilization of different data sets and time periods considered. Integrated approaches are thus needed to adequately address changes in these ecosystems in order to assess consistency and variability of change, as well as ecosystem vulnerability and resiliency across spatial and temporal scales. Ultimately this can best be accomplished via multiple lines of evidence including remote sensing, field measurements and various types of data-constrained models. We will discuss some recent results integrating multiple lines of evidence for directional ecosystem change in the Arctic and boreal forest biomes of North America. There is increasing evidence for widespread spatial and temporal variability in Arctic and boreal ecosystem productivity changes that are strongly influenced by cycles of changing fire disturbance severity and its longer-term implications (i.e legacy effects). Integrated, multi-approach research, like that currently underway as part of the NASA-led Arctic Boreal Vulnerability Experiment (above.nasa.gov), is an effective way to capture the complex mechanisms that drive patterns and directionality of ecosystem structure and function, and ultimately determine feedbacks to environmental change, particularly in the context of global climate change. Additional ongoing ABoVE research will improve our understanding of the consequences of environmental changes underway, as well as increase our confidence in making projections of the ecosystem responses, vulnerability and resilience to change. ABoVE will also build a lasting legacy of

  2. Modeled responses of terrestrial ecosystems to elevated atmospheric CO2: a comparison of simulations by the biogeochemistry models of the Vegetation/Ecosystem Modeling and Analysis Project (VEMAP).

    Science.gov (United States)

    Pan, Yude; Melillo, Jerry M; McGuire, A David; Kicklighter, David W; Pitelka, Louis F; Hibbard, Kathy; Pierce, Lars L; Running, Steven W; Ojima, Dennis S; Parton, William J; Schimel, David S

    1998-04-01

    Although there is a great deal of information concerning responses to increases in atmospheric CO 2 at the tissue and plant levels, there are substantially fewer studies that have investigated ecosystem-level responses in the context of integrated carbon, water, and nutrient cycles. Because our understanding of ecosystem responses to elevated CO 2 is incomplete, modeling is a tool that can be used to investigate the role of plant and soil interactions in the response of terrestrial ecosystems to elevated CO 2 . In this study, we analyze the responses of net primary production (NPP) to doubled CO 2 from 355 to 710 ppmv among three biogeochemistry models in the Vegetation/Ecosystem Modeling and Analysis Project (VEMAP): BIOME-BGC (BioGeochemical Cycles), Century, and the Terrestrial Ecosystem Model (TEM). For the conterminous United States, doubled atmospheric CO 2 causes NPP to increase by 5% in Century, 8% in TEM, and 11% in BIOME-BGC. Multiple regression analyses between the NPP response to doubled CO 2 and the mean annual temperature and annual precipitation of biomes or grid cells indicate that there are negative relationships between precipitation and the response of NPP to doubled CO 2 for all three models. In contrast, there are different relationships between temperature and the response of NPP to doubled CO 2 for the three models: there is a negative relationship in the responses of BIOME-BGC, no relationship in the responses of Century, and a positive relationship in the responses of TEM. In BIOME-BGC, the NPP response to doubled CO 2 is controlled by the change in transpiration associated with reduced leaf conductance to water vapor. This change affects soil water, then leaf area development and, finally, NPP. In Century, the response of NPP to doubled CO 2 is controlled by changes in decomposition rates associated with increased soil moisture that results from reduced evapotranspiration. This change affects nitrogen availability for plants, which

  3. Atlantis Modeled Output Data for the Coral Reef Ecosystems of Guam

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — A proof-of-concept Guam Atlantis Coral Reef Ecosystem Model has been developed and an added coral module to the Atlantis framework has been validated. The model is...

  4. Application of eco-exergy for assessment of ecosystem health and development of structurally dynamic models

    DEFF Research Database (Denmark)

    Zhang, J.; Gürkan, Zeren; Jørgensen, S.E.

    2010-01-01

    are developed using eco-exergy as the goal function, have been applied in explaining and exploring ecosystem properties and changes in community structure driven by biotic and abiotic factors. In this paper, we review the application of eco-exergy for the assessment of ecosystem health and development......Eco-exergy has been widely used in the assessment of ecosystem health, parameter estimations, calibrations, validations and prognoses. It offers insights into the understanding of ecosystem dynamics and disturbance-cl riven changes. Particularly, structurally dynamic models (SDMs), which...

  5. Modelling the growth of Populus species using Ecosystem Demography (ED) model

    Science.gov (United States)

    Wang, D.; Lebauer, D. S.; Feng, X.; Dietze, M. C.

    2010-12-01

    Hybrid poplar plantations are an important source being evaluated for biomass production. Effective management of such plantations requires adequate growth and yield models. The Ecosystem Demography model (ED) makes predictions about the large scales of interest in above- and belowground ecosystem structure and the fluxes of carbon and water from a description of the fine-scale physiological processes. In this study, we used a workflow management tool, the Predictive Ecophysiological Carbon flux Analyzer (PECAn), to integrate literature data, field measurement and the ED model to provide predictions of ecosystem functioning. Parameters for the ED ensemble runs were sampled from the posterior distribution of ecophysiological traits of Populus species compiled from the literature using a Bayesian meta-analysis approach. Sensitivity analysis was performed to identify the parameters which contribute the most to the uncertainties of the ED model output. Model emulation techniques were used to update parameter posterior distributions using field-observed data in northern Wisconsin hybrid poplar plantations. Model results were evaluated with 5-year field-observed data in a hybrid poplar plantation at New Franklin, MO. ED was then used to predict the spatial variability of poplar yield in the coterminous United States (United States minus Alaska and Hawaii). Sensitivity analysis showed that root respiration, dark respiration, growth respiration, stomatal slope and specific leaf area contribute the most to the uncertainty, which suggests that our field measurements and data collection should focus on these parameters. The ED model successfully captured the inter-annual and spatial variability of the yield of poplar. Analyses in progress with the ED model focus on evaluating the ecosystem services of short-rotation woody plantations, such as impacts on soil carbon storage, water use, and nutrient retention.

  6. Study on the ecosystem construction of using ecopath model in inland waterway

    Science.gov (United States)

    Zhao, Junjie; Bai, Jing; Zhang, Lu; Wang, Ning; Shou, Youping

    2018-04-01

    In this paper, Ecopath with Ecosim 5.1 software is used to simulate the constructed water ecosystem of inland waterway. According to the characteristics of feeding relationship, the ecopath model of water ecosystem is divided into seven functional groups: phytoplankton, hydrophyte, zooplankton, herbivorous, omnivorous, polychaetes and detritus. By analyzing the important ecological parameters of the ecosystem, such as biomass, biomass / biomass, consumption / biomass, trophic level and ecological nutrient conversion efficiency, the software integrates the energy flow process of the ecosystem, the ratio of the total net primary production and the sum of all respiratory flows is 1.314, it’s indicating that the ecosystem is equilibrium. The research method of this paper can be widely used to evaluate the stability of the ecosystem of the domestic river.

  7. Examining Ecological and Ecosystem Level Impacts of Aquatic Invasive Species in Lake Michigan Using An Ecosystem Productivity Model, LM-Eco

    Science.gov (United States)

    Ecological and ecosystem-level impacts of aquatic invasive species in Lake Michigan were examined using the Lake Michigan Ecosystem Model (LM-Eco). The LM-Eco model includes a detailed description of trophic levels and their interactions within the lower food web of Lake Michiga...

  8. Using FLUXNET data to improve models of springtime vegetation activity onset in forest ecosystems

    NARCIS (Netherlands)

    Melaas, E.; Richardson, A.; Friedl, M.; Dragoni, D.; Gough, C.; Herbst, M.; Montagnani, L.; Moors, E.J.

    2013-01-01

    Vegetation phenology is sensitive to climate change and variability, and is a first order control on the carbon budget of forest ecosystems. Robust representation of phenology is therefore needed to support model-based projections of how climate change will affect ecosystem function. A variety of

  9. Ecosystem modelling in the Forsmark area. Proceedings from two workshops modelling Eckarfjaerden and Bolundsfjaerden catchment areas

    Energy Technology Data Exchange (ETDEWEB)

    Lindborg, Tobias; Kautsky, Ulrik [eds.

    2004-11-01

    The siting program for a repository of spent fuel currently collects large set of data from the surface ecosystem, as well as from the geosphere. The data collected at the sites will be used for various purposes, mainly for the safety assessment for the repository and for environmental impact assessment. The safety assessment of the encapsulation plant also includes an assessment of the postclosure of the repository (SRCAN) at the two sites of current interest for a repository. To show important methods on how data from the sites should be used in a safety assessment, a report for methods concerning SRCAN will be produced. This report is a first step in showing how the site data will be used to understand the function and dynamics of the ecosystems and how it may be translated in various dose models. A more extensive report from The SurfaceNet taskforce is presented in SKB-R--05-01. This report is based on two workshops held in Grisslehamn, Uppland October 20-23, 2003 and in Marholmen, Uppland April 16-19, 2004. Participants from the site investigation program, the analysis group, safety assessment and research attended the workshops. The groups worked intensively for 3 full days respectively, and achieved the major findings in this report. The two workshops had approximately the same approach, although Marholmen was more focused on the terrestrial ecosystems and Grisslehamn on aquatic systems. Besides the major aim of the workshops, to examine function and dynamics of ecosystems translated into dose modelling, another purpose was to communicate the reasons for the sampling programmes, to train new resources and to get plenty of undisturbed time to generate a large amount of creative work. It also got the important role of increased understanding between different scientific disciplines. High quality data is important for validating the dose- and ecosystem models.

  10. Ecosystem modelling in the Forsmark area. Proceedings from two workshops modelling Eckarfjaerden and Bolundsfjaerden catchment areas

    International Nuclear Information System (INIS)

    Lindborg, Tobias; Kautsky, Ulrik

    2004-11-01

    The siting program for a repository of spent fuel currently collects large set of data from the surface ecosystem, as well as from the geosphere. The data collected at the sites will be used for various purposes, mainly for the safety assessment for the repository and for environmental impact assessment. The safety assessment of the encapsulation plant also includes an assessment of the postclosure of the repository (SRCAN) at the two sites of current interest for a repository. To show important methods on how data from the sites should be used in a safety assessment, a report for methods concerning SRCAN will be produced. This report is a first step in showing how the site data will be used to understand the function and dynamics of the ecosystems and how it may be translated in various dose models. A more extensive report from The SurfaceNet taskforce is presented in SKB-R--05-01. This report is based on two workshops held in Grisslehamn, Uppland October 20-23, 2003 and in Marholmen, Uppland April 16-19, 2004. Participants from the site investigation program, the analysis group, safety assessment and research attended the workshops. The groups worked intensively for 3 full days respectively, and achieved the major findings in this report. The two workshops had approximately the same approach, although Marholmen was more focused on the terrestrial ecosystems and Grisslehamn on aquatic systems. Besides the major aim of the workshops, to examine function and dynamics of ecosystems translated into dose modelling, another purpose was to communicate the reasons for the sampling programmes, to train new resources and to get plenty of undisturbed time to generate a large amount of creative work. It also got the important role of increased understanding between different scientific disciplines. High quality data is important for validating the dose- and ecosystem models

  11. Ecosystem models. Volume 2. November, 1975--1977 (a bibliography with abstracts). Report for Nov 1975--Nov 1977

    International Nuclear Information System (INIS)

    Harrison, E.A.

    1978-10-01

    The preparation and use of ecosystem models are covered in this bibliography of Federally-funded research. Models for marine biology, wildlife, plants, water pollution, microorganisms, food chains, radioactive substances, limnology, and diseases as related to ecosystems are included

  12. Ecosystem models. Volume 3. November, 1977--October, 1978 (a bibliography with abstracts). Report for Nov 1977--Oct 1978

    International Nuclear Information System (INIS)

    Harrison, E.A.

    1978-10-01

    The preparation and use of ecosystem models are covered in this bibliography of Federally-funded research. Models for marine biology, wildlife, plants, water pollution, microorganisms, food chains, radioactive substances, limnology, and diseases as related to ecosystems are included

  13. A hierarchical analysis of terrestrial ecosystem model Biome-BGC: Equilibrium analysis and model calibration

    Energy Technology Data Exchange (ETDEWEB)

    Thornton, Peter E [ORNL; Wang, Weile [ORNL; Law, Beverly E. [Oregon State University; Nemani, Ramakrishna R [NASA Ames Research Center

    2009-01-01

    The increasing complexity of ecosystem models represents a major difficulty in tuning model parameters and analyzing simulated results. To address this problem, this study develops a hierarchical scheme that simplifies the Biome-BGC model into three functionally cascaded tiers and analyzes them sequentially. The first-tier model focuses on leaf-level ecophysiological processes; it simulates evapotranspiration and photosynthesis with prescribed leaf area index (LAI). The restriction on LAI is then lifted in the following two model tiers, which analyze how carbon and nitrogen is cycled at the whole-plant level (the second tier) and in all litter/soil pools (the third tier) to dynamically support the prescribed canopy. In particular, this study analyzes the steady state of these two model tiers by a set of equilibrium equations that are derived from Biome-BGC algorithms and are based on the principle of mass balance. Instead of spinning-up the model for thousands of climate years, these equations are able to estimate carbon/nitrogen stocks and fluxes of the target (steady-state) ecosystem directly from the results obtained by the first-tier model. The model hierarchy is examined with model experiments at four AmeriFlux sites. The results indicate that the proposed scheme can effectively calibrate Biome-BGC to simulate observed fluxes of evapotranspiration and photosynthesis; and the carbon/nitrogen stocks estimated by the equilibrium analysis approach are highly consistent with the results of model simulations. Therefore, the scheme developed in this study may serve as a practical guide to calibrate/analyze Biome-BGC; it also provides an efficient way to solve the problem of model spin-up, especially for applications over large regions. The same methodology may help analyze other similar ecosystem models as well.

  14. Tools and methods for evaluating and refining alternative futures for coastal ecosystem management—the Puget Sound Ecosystem Portfolio Model

    Science.gov (United States)

    Byrd, Kristin B.; Kreitler, Jason R.; Labiosa, William B.

    2011-01-01

    The U.S. Geological Survey Puget Sound Ecosystem Portfolio Model (PSEPM) is a decision-support tool that uses scenarios to evaluate where, when, and to what extent future population growth, urban growth, and shoreline development may threaten the Puget Sound nearshore environment. This tool was designed to be used iteratively in a workshop setting in which experts, stakeholders, and decisionmakers discuss consequences to the Puget Sound nearshore within an alternative-futures framework. The PSEPM presents three possible futures of the nearshore by analyzing three growth scenarios developed out to 2060: Status Quo—continuation of current trends; Managed Growth—adoption of an aggressive set of land-use management policies; and Unconstrained Growth—relaxation of land-use restrictions. The PSEPM focuses on nearshore environments associated with barrier and bluff-backed beaches—the most dominant shoreforms in Puget Sound—which represent 50 percent of Puget Sound shorelines by length. This report provides detailed methodologies for development of three submodels within the PSEPM—the Shellfish Pollution Model, the Beach Armoring Index, and the Recreation Visits Model. Results from the PSEPM identify where and when future changes to nearshore ecosystems and ecosystem services will likely occur within the three growth scenarios. Model outputs include maps that highlight shoreline sections where nearshore resources may be at greater risk from upland land-use changes. The background discussed in this report serves to document and supplement model results displayed on the PSEPM Web site located at http://geography.wr.usgs.gov/pugetSound/.

  15. The evolution of ecosystem ascendency in a complex systems based model.

    Science.gov (United States)

    Brinck, Katharina; Jensen, Henrik Jeldtoft

    2017-09-07

    General patterns in ecosystem development can shed light on driving forces behind ecosystem formation and recovery and have been of long interest. In recent years, the need for integrative and process oriented approaches to capture ecosystem growth, development and organisation, as well as the scope of information theory as a descriptive tool has been addressed from various sides. However data collection of ecological network flows is difficult and tedious and comprehensive models are lacking. We use a hierarchical version of the Tangled Nature Model of evolutionary ecology to study the relationship between structure, flow and organisation in model ecosystems, their development over evolutionary time scales and their relation to ecosystem stability. Our findings support the validity of ecosystem ascendency as a meaningful measure of ecosystem organisation, which increases over evolutionary time scales and significantly drops during periods of disturbance. The results suggest a general trend towards both higher integrity and increased stability driven by functional and structural ecosystem coadaptation. Copyright © 2017 Elsevier Ltd. All rights reserved.

  16. Modeling Hawaiian ecosystem degradation due to invasive plants under current and future climates.

    Directory of Open Access Journals (Sweden)

    Adam E Vorsino

    Full Text Available Occupation of native ecosystems by invasive plant species alters their structure and/or function. In Hawaii, a subset of introduced plants is regarded as extremely harmful due to competitive ability, ecosystem modification, and biogeochemical habitat degradation. By controlling this subset of highly invasive ecosystem modifiers, conservation managers could significantly reduce native ecosystem degradation. To assess the invasibility of vulnerable native ecosystems, we selected a proxy subset of these invasive plants and developed robust ensemble species distribution models to define their respective potential distributions. The combinations of all species models using both binary and continuous habitat suitability projections resulted in estimates of species richness and diversity that were subsequently used to define an invasibility metric. The invasibility metric was defined from species distribution models with 0.8; True Skill Statistic >0.75 as evaluated per species. Invasibility was further projected onto a 2100 Hawaii regional climate change scenario to assess the change in potential habitat degradation. The distribution defined by the invasibility metric delineates areas of known and potential invasibility under current climate conditions and, when projected into the future, estimates potential reductions in native ecosystem extent due to climate-driven invasive incursion. We have provided the code used to develop these metrics to facilitate their wider use (Code S1. This work will help determine the vulnerability of native-dominated ecosystems to the combined threats of climate change and invasive species, and thus help prioritize ecosystem and species management actions.

  17. Modeling Hawaiian ecosystem degradation due to invasive plants under current and future climates

    Science.gov (United States)

    Vorsino, Adam E.; Fortini, Lucas B.; Amidon, Fred A.; Miller, Stephen E.; Jacobi, James D.; Price, Jonathan P.; `Ohukani`ohi`a Gon, Sam; Koob, Gregory A.

    2014-01-01

    Occupation of native ecosystems by invasive plant species alters their structure and/or function. In Hawaii, a subset of introduced plants is regarded as extremely harmful due to competitive ability, ecosystem modification, and biogeochemical habitat degradation. By controlling this subset of highly invasive ecosystem modifiers, conservation managers could significantly reduce native ecosystem degradation. To assess the invasibility of vulnerable native ecosystems, we selected a proxy subset of these invasive plants and developed robust ensemble species distribution models to define their respective potential distributions. The combinations of all species models using both binary and continuous habitat suitability projections resulted in estimates of species richness and diversity that were subsequently used to define an invasibility metric. The invasibility metric was defined from species distribution models with 0.8; True Skill Statistic >0.75) as evaluated per species. Invasibility was further projected onto a 2100 Hawaii regional climate change scenario to assess the change in potential habitat degradation. The distribution defined by the invasibility metric delineates areas of known and potential invasibility under current climate conditions and, when projected into the future, estimates potential reductions in native ecosystem extent due to climate-driven invasive incursion. We have provided the code used to develop these metrics to facilitate their wider use (Code S1). This work will help determine the vulnerability of native-dominated ecosystems to the combined threats of climate change and invasive species, and thus help prioritize ecosystem and species management actions.

  18. Bioenergy Ecosystem Land-Use Modelling and Field Flux Trial

    Science.gov (United States)

    McNamara, Niall; Bottoms, Emily; Donnison, Iain; Dondini, Marta; Farrar, Kerrie; Finch, Jon; Harris, Zoe; Ineson, Phil; Keane, Ben; Massey, Alice; McCalmont, Jon; Morison, James; Perks, Mike; Pogson, Mark; Rowe, Rebecca; Smith, Pete; Sohi, Saran; Tallis, Mat; Taylor, Gail; Yamulki, Sirwan

    2013-04-01

    loss after land use change at 100 fieldsites which encapsulate a range of UK climates and soil types. Our overall objective is to use our measured data to parameterise and validate the models that we will use to predict the implications of bioenergy crop deployment in the UK up to 2050. The resultant output will be a meta-model which will help facilitate decision making on the sustainable development of bioenergy in the UK, with potential deployment in other temperate climates around the world. Here we report on the outcome of the first of three years of work. This work is based on the Ecosystem Land Use Modelling & Soil Carbon GHG Flux Trial (ELUM) project, which was commissioned and funded by the Energy Technologies Institute (ETI). Don et al. (2012) Land-use change to bioenergy production in Europe: implications for the greenhouse gas balance and soil carbon. GCB Bioenergy 4, 372-379.

  19. How models can support ecosystem-based management of coral reefs

    Science.gov (United States)

    Weijerman, Mariska; Fulton, Elizabeth A.; Janssen, Annette B. G.; Kuiper, Jan J.; Leemans, Rik; Robson, Barbara J.; van de Leemput, Ingrid A.; Mooij, Wolf M.

    2015-11-01

    Despite the importance of coral reef ecosystems to the social and economic welfare of coastal communities, the condition of these marine ecosystems have generally degraded over the past decades. With an increased knowledge of coral reef ecosystem processes and a rise in computer power, dynamic models are useful tools in assessing the synergistic effects of local and global stressors on ecosystem functions. We review representative approaches for dynamically modeling coral reef ecosystems and categorize them as minimal, intermediate and complex models. The categorization was based on the leading principle for model development and their level of realism and process detail. This review aims to improve the knowledge of concurrent approaches in coral reef ecosystem modeling and highlights the importance of choosing an appropriate approach based on the type of question(s) to be answered. We contend that minimal and intermediate models are generally valuable tools to assess the response of key states to main stressors and, hence, contribute to understanding ecological surprises. As has been shown in freshwater resources management, insight into these conceptual relations profoundly influences how natural resource managers perceive their systems and how they manage ecosystem recovery. We argue that adaptive resource management requires integrated thinking and decision support, which demands a diversity of modeling approaches. Integration can be achieved through complimentary use of models or through integrated models that systemically combine all relevant aspects in one model. Such whole-of-system models can be useful tools for quantitatively evaluating scenarios. These models allow an assessment of the interactive effects of multiple stressors on various, potentially conflicting, management objectives. All models simplify reality and, as such, have their weaknesses. While minimal models lack multidimensionality, system models are likely difficult to interpret as they

  20. Ecosystem Jenga!

    Science.gov (United States)

    Umphlett, Natalie; Brosius, Tierney; Laungani, Ramesh; Rousseau, Joe; Leslie-Pelecky, Diandra L.

    2009-01-01

    To give students a tangible model of an ecosystem and have them experience what could happen if a component of that ecosystem were removed; the authors developed a hands-on, inquiry-based activity that visually demonstrates the concept of a delicately balanced ecosystem through a modification of the popular game Jenga. This activity can be…

  1. Modelling the dynamic interactions between food production and ecosystem services

    NARCIS (Netherlands)

    Duku, C.

    2017-01-01

    Given the high levels of food insecurity and the loss of vital ecosystem services associated with deforestation, countries in sub-Saharan Africa (SSA) face a major dilemma. How can they produce enough food in a changing climate to feed an increasing population while protecting natural forests and

  2. Toxicological evaluation of parathion and azinphosmethyl in freshwater model ecosystems

    NARCIS (Netherlands)

    Dortland, R.J.

    1980-01-01

    A study was made of the possible hazards of long-term exposure of freshwater ecosystems to low (< 1 mg m -3) concentrations of organophosphorus insecticides. Range-finding, acute and sub-acute (3 weeks) laboratory toxicity trials were

  3. Modeling Heterogeneous Fishing Fleet in an Ecosystem Based Management Context

    DEFF Research Database (Denmark)

    Hutniczak, Barbara

    The rapid pace of climate change and increased human disturbance of ecosystems in the Arctic is bringing urgency to concern over non-native species introductions and their potential threats to the marine environment and its economic productivity, where before environmental conditions served...

  4. Convergence and Divergence in a Multi-Model Ensemble of Terrestrial Ecosystem Models in North America

    Science.gov (United States)

    Dungan, J. L.; Wang, W.; Hashimoto, H.; Michaelis, A.; Milesi, C.; Ichii, K.; Nemani, R. R.

    2009-12-01

    In support of NACP, we are conducting an ensemble modeling exercise using the Terrestrial Observation and Prediction System (TOPS) to evaluate uncertainties among ecosystem models, satellite datasets, and in-situ measurements. The models used in the experiment include public-domain versions of Biome-BGC, LPJ, TOPS-BGC, and CASA, driven by a consistent set of climate fields for North America at 8km resolution and daily/monthly time steps over the period of 1982-2006. The reference datasets include MODIS Gross Primary Production (GPP) and Net Primary Production (NPP) products, Fluxnet measurements, and other observational data. The simulation results and the reference datasets are consistently processed and systematically compared in the climate (temperature-precipitation) space; in particular, an alternative to the Taylor diagram is developed to facilitate model-data intercomparisons in multi-dimensional space. The key findings of this study indicate that: the simulated GPP/NPP fluxes are in general agreement with observations over forests, but are biased low (underestimated) over non-forest types; large uncertainties of biomass and soil carbon stocks are found among the models (and reference datasets), often induced by seemingly “small” differences in model parameters and implementation details; the simulated Net Ecosystem Production (NEP) mainly responds to non-respiratory disturbances (e.g. fire) in the models and therefore is difficult to compare with flux data; and the seasonality and interannual variability of NEP varies significantly among models and reference datasets. These findings highlight the problem inherent in relying on only one modeling approach to map surface carbon fluxes and emphasize the pressing necessity of expanded and enhanced monitoring systems to narrow critical structural and parametrical uncertainties among ecosystem models.

  5. Urban ecosystem modeling and global change: Potential for rational urban management and emissions mitigation

    International Nuclear Information System (INIS)

    Chen, Shaoqing; Chen, Bin; Fath, Brian D.

    2014-01-01

    Urbanization is a strong and extensive driver that causes environmental pollution and climate change from local to global scale. Modeling cities as ecosystems has been initiated by a wide range of scientists as a key to addressing challenging problems concomitant with urbanization. In this paper, ‘urban ecosystem modeling (UEM)’ is defined in an inter-disciplinary context to acquire a broad perception of urban ecological properties and their interactions with global change. Furthermore, state-of-the-art models of urban ecosystems are reviewed, categorized as top-down models (including materials/energy-oriented models and structure-oriented models), bottom-up models (including land use-oriented models and infrastructure-oriented models), or hybrid models thereof. Based on the review of UEM studies, a future framework for explicit UEM is proposed based the integration of UEM approaches of different scales, guiding more rational urban management and efficient emissions mitigation. - Highlights: • Urban ecosystems modeling (UEM) is defined in an interdisciplinary context. • State-of-the-art models for UEM are critically reviewed and compared. • An integrated framework for explicit UEM is proposed under global change. - State-of-the-art models of urban ecosystem modeling (UEM) are reviewed for rational urban management and emissions mitigation

  6. Modeling the Ecosystem Services Provided by Trees in Urban Ecosystems: Using Biome-BGC to Improve i-Tree Eco

    Science.gov (United States)

    Brown, Molly E.; McGroddy, Megan; Spence, Caitlin; Flake, Leah; Sarfraz, Amna; Nowak, David J.; Milesi, Cristina

    2012-01-01

    As the world becomes increasingly urban, the need to quantify the effect of trees in urban environments on energy usage, air pollution, local climate and nutrient run-off has increased. By identifying, quantifying and valuing the ecological activity that provides services in urban areas, stronger policies and improved quality of life for urban residents can be obtained. Here we focus on two radically different models that can be used to characterize urban forests. The i-Tree Eco model (formerly UFORE model) quantifies ecosystem services (e.g., air pollution removal, carbon storage) and values derived from urban trees based on field measurements of trees and local ancillary data sets. Biome-BGC (Biome BioGeoChemistry) is used to simulate the fluxes and storage of carbon, water, and nitrogen in natural environments. This paper compares i-Tree Eco's methods to those of Biome-BGC, which estimates the fluxes and storage of energy, carbon, water and nitrogen for vegetation and soil components of the ecosystem. We describe the two models and their differences in the way they calculate similar properties, with a focus on carbon and nitrogen. Finally, we discuss the implications of further integration of these two communities for land managers such as those in Maryland.

  7. Model Simulations of a Mesocosm Experiment Investigating the Response of a Low Nutrient Low Chlorophyll (LNLC Marine Ecosystem to Atmospheric Deposition Events

    Directory of Open Access Journals (Sweden)

    Kostas P. Tsiaras

    2017-05-01

    nutrient concentrations for bacteria nutrient limitation. The effective increase in phytoplankton nutrient uptake rate was necessary, in order to reproduce the observed primary production, under such low nutrient concentrations, as also the increase of the grazers growth rate. The model was thus tuned to better work under very low nutrient concentrations, such as those found in the Eastern Mediterranean.

  8. Are more complex physiological models of forest ecosystems better choices for plot and regional predictions?

    Science.gov (United States)

    Wenchi Jin; Hong S. He; Frank R. Thompson

    2016-01-01

    Process-based forest ecosystem models vary from simple physiological, complex physiological, to hybrid empirical-physiological models. Previous studies indicate that complex models provide the best prediction at plot scale with a temporal extent of less than 10 years, however, it is largely untested as to whether complex models outperform the other two types of models...

  9. Persistence of Only a Minute Viable Population in Chlorotic Microcystis aeruginosa PCC 7806 Cultures Obtained by Nutrient Limitation.

    Directory of Open Access Journals (Sweden)

    Diogo de Abreu Meireles

    Full Text Available Cultures from the cyanobacterial strain Microcystis aeruginosa PCC 7806 submitted to nutrient limitation become chlorotic. When returned to nutrient rich conditions these cultures regain their green colour. The aim of this study was to verify whether the cells in these cultures could be considered resting stages allowing the survival of periods of nutrient starvation as has been reported for Synechococcus PCC 7942. The experiments with Microcystis were carried out in parallel with Synechococcus cultures to rule out the possibility that any results obtained with Microcystis were due to our particular experimental conditions. The results of the experiments with Synechococcus PCC 7942 cultures were comparable to the reported in the literature. For Microcystis PCC 7806 a different response was observed. Analysis of chlorotic Microcystis cultures by flow cytometry showed that the phenotype of the cells in the population was not homogenous: the amount of nucleic acids was about the same in all cells but only around one percent of the population emitted red autofluorescence indicating the presence of chlorophyll. Monitoring of the reversion of chlorosis by flow cytometry showed that the re-greening was most likely the result of the division of the small population of red autofluorescent cells originally present in the chlorotic cultures. This assumption was confirmed by analysing the integrity of the DNA and the membrane permeability of the cells of chlorotic cultures. Most of the DNA of these cultures was degraded and only the autofluorescent population of the chlorotic cultures showed membrane integrity. Thus, contrary to what has been reported for other cyanobacterial genera, most of the cells in chlorotic Microcystis cultures are not resting stages but dead. It is interesting to note that the red autofluorescent cells of green and chlorotic cultures obtained in double strength ASM-1 medium differ with respect to metabolism: levels of emission of

  10. Persistence of Only a Minute Viable Population in Chlorotic Microcystis aeruginosa PCC 7806 Cultures Obtained by Nutrient Limitation.

    Science.gov (United States)

    Meireles, Diogo de Abreu; Schripsema, Jan; Arnholdt, Andrea Cristina Vetö; Dagnino, Denise

    2015-01-01

    Cultures from the cyanobacterial strain Microcystis aeruginosa PCC 7806 submitted to nutrient limitation become chlorotic. When returned to nutrient rich conditions these cultures regain their green colour. The aim of this study was to verify whether the cells in these cultures could be considered resting stages allowing the survival of periods of nutrient starvation as has been reported for Synechococcus PCC 7942. The experiments with Microcystis were carried out in parallel with Synechococcus cultures to rule out the possibility that any results obtained with Microcystis were due to our particular experimental conditions. The results of the experiments with Synechococcus PCC 7942 cultures were comparable to the reported in the literature. For Microcystis PCC 7806 a different response was observed. Analysis of chlorotic Microcystis cultures by flow cytometry showed that the phenotype of the cells in the population was not homogenous: the amount of nucleic acids was about the same in all cells but only around one percent of the population emitted red autofluorescence indicating the presence of chlorophyll. Monitoring of the reversion of chlorosis by flow cytometry showed that the re-greening was most likely the result of the division of the small population of red autofluorescent cells originally present in the chlorotic cultures. This assumption was confirmed by analysing the integrity of the DNA and the membrane permeability of the cells of chlorotic cultures. Most of the DNA of these cultures was degraded and only the autofluorescent population of the chlorotic cultures showed membrane integrity. Thus, contrary to what has been reported for other cyanobacterial genera, most of the cells in chlorotic Microcystis cultures are not resting stages but dead. It is interesting to note that the red autofluorescent cells of green and chlorotic cultures obtained in double strength ASM-1 medium differ with respect to metabolism: levels of emission of red autofluorescence

  11. QUANTIFYING AND MODELING THE RISK OF DISTURBANCE TO ECOSYSTEMS CAUSED BY INVASIVE SPECIES

    Science.gov (United States)

    Invasive species are biological pollutants that threaten ecosystem health. Identifying the mechanisms of invasive and developing predictive models of invasion will be critical to developing risk management strategies for limiting the economic and environmental damage caused by i...

  12. Ecosystem models (a bibliography with abstracts). Report for 1964-Nov 1975

    International Nuclear Information System (INIS)

    Harrison, E.A.

    1975-11-01

    The bibliography contains abstracts which cover marine biology, natural resources, wildlife, plants, water pollution, microorganisms, food chains, radioactive substances, limnology, and diseases as related to ecosystem models. Contains 214 abstracts

  13. A compartment model of plutonium dynamics in a deciduous forest ecosystem

    International Nuclear Information System (INIS)

    Garten, C.T. Jr.; Gardner, R.H.; Dahlman, R.C.

    1978-01-01

    A linear compartment donor-controlled model was designed to describe and simulate the behaviour of plutonium ( 239 , 240 Pu) in a contaminated deciduous forest ecosystem at Oak Ridge, Tennessee. At steady states predicted by the model, less than 0.25% of the Pu in the ecosystem resides in forest biota. Soil is the major repository of Pu in the forest, and reciprocal exchanges of Pu between soil and litter or soil and tree roots were dominant transfers affecting the ecosystem distribution of Pu. Variation in predicted steady state amounts of Pu in the forest, given variability in the model parameters, indicated that ones ability to develop reliable models of Pu transport in ecosystems will improve with greater precision in data from natural environments and a better understanding of sources of variation in Pu data. (author)

  14. A multi-objective constraint-based approach for modeling genome-scale microbial ecosystems.

    Science.gov (United States)

    Budinich, Marko; Bourdon, Jérémie; Larhlimi, Abdelhalim; Eveillard, Damien

    2017-01-01

    Interplay within microbial communities impacts ecosystems on several scales, and elucidation of the consequent effects is a difficult task in ecology. In particular, the integration of genome-scale data within quantitative models of microbial ecosystems remains elusive. This study advocates the use of constraint-based modeling to build predictive models from recent high-resolution -omics datasets. Following recent studies that have demonstrated the accuracy of constraint-based models (CBMs) for simulating single-strain metabolic networks, we sought to study microbial ecosystems as a combination of single-strain metabolic networks that exchange nutrients. This study presents two multi-objective extensions of CBMs for modeling communities: multi-objective flux balance analysis (MO-FBA) and multi-objective flux variability analysis (MO-FVA). Both methods were applied to a hot spring mat model ecosystem. As a result, multiple trade-offs between nutrients and growth rates, as well as thermodynamically favorable relative abundances at community level, were emphasized. We expect this approach to be used for integrating genomic information in microbial ecosystems. Following models will provide insights about behaviors (including diversity) that take place at the ecosystem scale.

  15. A multi-objective constraint-based approach for modeling genome-scale microbial ecosystems.

    Directory of Open Access Journals (Sweden)

    Marko Budinich

    Full Text Available Interplay within microbial communities impacts ecosystems on several scales, and elucidation of the consequent effects is a difficult task in ecology. In particular, the integration of genome-scale data within quantitative models of microbial ecosystems remains elusive. This study advocates the use of constraint-based modeling to build predictive models from recent high-resolution -omics datasets. Following recent studies that have demonstrated the accuracy of constraint-based models (CBMs for simulating single-strain metabolic networks, we sought to study microbial ecosystems as a combination of single-strain metabolic networks that exchange nutrients. This study presents two multi-objective extensions of CBMs for modeling communities: multi-objective flux balance analysis (MO-FBA and multi-objective flux variability analysis (MO-FVA. Both methods were applied to a hot spring mat model ecosystem. As a result, multiple trade-offs between nutrients and growth rates, as well as thermodynamically favorable relative abundances at community level, were emphasized. We expect this approach to be used for integrating genomic information in microbial ecosystems. Following models will provide insights about behaviors (including diversity that take place at the ecosystem scale.

  16. The ecosystem models used for dose assessments in SR-Can

    Energy Technology Data Exchange (ETDEWEB)

    Avila, Rodolfo [Facilia AB, Bromma (Sweden)

    2006-11-15

    The estimation of doses to humans in the main scenarios considered in SR-Can is carried out by multiplying the radionuclide releases to the biosphere by Landscape Dose Factors (LDF), which provide estimates of doses incurred by unit releases of activity of a specific radionuclide to the landscape. The landscape models considered in deriving the LDFs consist of a set of interconnected ecosystem models of different types, including aquatic and terrestrial ecosystems. Aquatic ecosystems comprise the sea, lakes and rivers. The terrestrial ecosystems include agricultural lands, forests and mires. In this report dose conversion factor for each individual ecosystem are reported. Two release cases are considered in the report: a constant unit release rate during 10,000 years and a pulse release, i.e. a unit release during one year. For deriving the LDF values, at each considered time period an ecosystem model is assigned to each landscape object, according to the projected succession of ecosystems in the objects. The applied ecosystem models have been described elsewhere, but some modifications have been made which are described in this report. The main modifications applied to the models are to consider releases through bottom sediments and to consider upstream fluxes for the estimation of the fluxes of radionuclides between the different landscape objects. To facilitate calculations of the radionuclide concentrations in the ingested food, aggregated transfer factors are derived for each ecosystem type. These relate the radionuclide concentrations in the edible carbon production in different ecosystem types to the radionuclide concentrations in the main environmental substrates of the ecosystems, i.e. the water in aquatic ecosystems and the soil in the terrestrial ecosystems. The report provides a description of the methods applied for the derivation of aggregated transfer factors for each ecosystem type and for irrigation. These factors are applicable for situations of

  17. The ecosystem models used for dose assessments in SR-Can

    International Nuclear Information System (INIS)

    Avila, Rodolfo

    2006-11-01

    The estimation of doses to humans in the main scenarios considered in SR-Can is carried out by multiplying the radionuclide releases to the biosphere by Landscape Dose Factors (LDF), which provide estimates of doses incurred by unit releases of activity of a specific radionuclide to the landscape. The landscape models considered in deriving the LDFs consist of a set of interconnected ecosystem models of different types, including aquatic and terrestrial ecosystems. Aquatic ecosystems comprise the sea, lakes and rivers. The terrestrial ecosystems include agricultural lands, forests and mires. In this report dose conversion factor for each individual ecosystem are reported. Two release cases are considered in the report: a constant unit release rate during 10,000 years and a pulse release, i.e. a unit release during one year. For deriving the LDF values, at each considered time period an ecosystem model is assigned to each landscape object, according to the projected succession of ecosystems in the objects. The applied ecosystem models have been described elsewhere, but some modifications have been made which are described in this report. The main modifications applied to the models are to consider releases through bottom sediments and to consider upstream fluxes for the estimation of the fluxes of radionuclides between the different landscape objects. To facilitate calculations of the radionuclide concentrations in the ingested food, aggregated transfer factors are derived for each ecosystem type. These relate the radionuclide concentrations in the edible carbon production in different ecosystem types to the radionuclide concentrations in the main environmental substrates of the ecosystems, i.e. the water in aquatic ecosystems and the soil in the terrestrial ecosystems. The report provides a description of the methods applied for the derivation of aggregated transfer factors for each ecosystem type and for irrigation. These factors are applicable for situations of

  18. Sensitivity of euphotic zone properties to CDOM variations in marine ecosystem models

    OpenAIRE

    Urtizberea, Agurtzane; Dupont, Nicolas; Rosland, Rune; Aksnes, Dag L.

    2013-01-01

    In marine ecosystem models, the underwater light intensity is commonly characterized by the shading of phytoplankton in addition to a background light attenuation coefficient. Colour dissolved organic matter (CDOM) is an important component of the background light attenuation, and we investigate how variation in CDOM attenuation affects euphotic zone properties in a general marine ecosystem model. Our results suggest that euphotic zone properties are highly sensitive to CDOM variations occurr...

  19. Activation of the operational ecohydrodynamic model (3D CEMBS - the ecosystem module

    Directory of Open Access Journals (Sweden)

    Jaromir Jakacki

    2013-08-01

    Full Text Available The paper describes the ecohydrodynamic predictive model - the ecosystem module - for assessing the state of the Baltic marine environment and the Baltic ecosystem. The Baltic Sea model 3D CEMBS (the Coupled Ecosystem Model of the Baltic Sea is based on the Community Earth System Model, which was adopted for the Baltic Sea as a coupled sea-ice-ecosystem model. The 3D CEMBS model uses: (i hydrodynamic equations describing water movement, (ii thermodynamic equations, (iii equations describing the concentration distribution of chemical variables in the sea, and (iv equations describing the exchange of matter between individual groups of organisms and their environment that make allowance for the kinetics of biochemical processes. The ecosystem model consists of 11 main components: three classes of phytoplankton (small phytoplankton, large phytoplankton represented mainly by diatoms and summer species, mostly cyanobacteria expressed in units of carbon and chlorophyll a as separate variables, zooplankton, pelagic detritus, dissolved oxygen and nutrients (nitrate, ammonium, phosphate and silicate. In operational mode, 48-hour atmospheric forecasts provided by the UM model from the Interdisciplinary Centre for Mathematical and Computational Modelling of Warsaw University (ICM are used. All model forecasts are available on the website http://deep.iopan.gda.pl/CEMBaltic/new_lay/index.php. The results presented in this paper show that the 3D CEMBS model is operating correctly.

  20. Community Structure and Activity of a Highly Dynamic and Nutrient-Limited Hypersaline Microbial Mat in Um Alhool Sabkha, Qatar

    KAUST Repository

    Al-Thani, Roda; Alnajjar, Mohammad Ahmad; Al-Raei, Abdul Munem; Ferdelman, Tim; Thang, Nguyen M.; Shaikh, Ismail Al; Al-Ansi, Mehsin; de Beer, Dirk

    2014-01-01

    The Um Alhool area in Qatar is a dynamic evaporative ecosystem that receives seawater from below as it is surrounded by sand dunes. We investigated the chemical composition, the microbial activity and biodiversity of the four main layers (L1–L4

  1. The Port Service Ecosystem Research Based on the Lotka-Volterra Model

    Directory of Open Access Journals (Sweden)

    Li Wenjuan

    2017-11-01

    Full Text Available Under the new normal of China’s economy, the competition among the port enterprises is not only the competition of the core competence of the port, the port industry chain or the port supply chain, but also the competition of the port service ecosystem. In this paper, the concept and characteristics of the port service ecosystem is discussed, a hierarchical model of the port service ecosystem is constructed. As an extended logistic model, Lotka-Volterra model is applied to study the competitive co-evolution and mutually beneficial co-evolution of enterprises in the port service ecosystem. This paper simulates the co-evolution of enterprises in the port service ecosystem by using MATLAB programming. The simulation results show that the breadth of the niche of the enterprises is changing with the change of the competition coefficient and the coefficient of mutual benefit in the port service ecosystem. Based on that, some proposals are put forward to ensure the healthy and orderly development of the port service ecosystem.

  2. Trophic models: What do we learn about Celtic Sea and Bay of Biscay ecosystems?

    Science.gov (United States)

    Moullec, Fabien; Gascuel, Didier; Bentorcha, Karim; Guénette, Sylvie; Robert, Marianne

    2017-08-01

    Trophic models are key tools to go beyond the single-species approaches used in stock assessments to adopt a more holistic view and implement the Ecosystem Approach to Fisheries Management (EAFM). This study aims to: (i) analyse the trophic functioning of the Celtic Sea and the Bay of Biscay, (ii) investigate ecosystem changes over the 1980-2013 period and, (iii) explore the response to management measures at the food web scale. Ecopath models were built for each ecosystem for years 1980 and 2013, and Ecosim models were fitted to time series data of biomass and catches. EcoTroph diagnosis showed that in both ecosystems, fishing pressure focuses on high trophic levels (TLs) and, to a lesser extent, on intermediate TLs. However, the interplay between local environmental conditions, species composition and ecosystem functioning could explain the different responses to fisheries management observed between these two contiguous ecosystems. Indeed, over the study period, the ecosystem's exploitation status has improved in the Bay of Biscay but not in the Celtic Sea. This improvement does not seem to be sufficient to achieve the objectives of an EAFM, as high trophic levels were still overexploited in 2013 and simulations conducted with Ecosim in the Bay of Biscay indicate that at current fishing effort the biomass will not be rebuilt by 2030. The ecosystem's response to a reduction in fishing mortality depends on which trophic levels receive protection. Reducing fishing mortality on pelagic fish, instead of on demersal fish, appears more efficient at maximising catch and total biomass and at conserving both top-predator and intermediate TLs. Such advice-oriented trophic models should be used on a regular basis to monitor the health status of marine food webs and analyse the trade-offs between multiple objectives in an ecosystem-based fisheries management context.

  3. Models for transport and fate of carbon, nutrients and radionuclides in the aquatic ecosystem at Oeregrundsgrepen

    International Nuclear Information System (INIS)

    Erichsen, Anders Christian; Moehlenberg, Flemming; Closter, Rikke Margrethe; Sandberg, Johannes

    2010-06-01

    The aim of the work was to provide supplementary input to the risk assessment of a planned final nuclear waste repository at Forsmark. The main deliverable was a computed water exchange between basins in the Forsmark marine area for the period 6500 BC to 9000 AD - based on the hydrodynamic modelling - to be used as input to the landscape dose model. In addition and what is described in this report, a second deliverable was development and application of high-resolution models for the marine ecosystem and radionuclide processes. The purpose of this deliverable was to illustrate the spatial and temporal variation in important processes and parameters, while constituting a complement to previous modelling approaches and providing supporting information to discussions of the marine ecosystem, parameters and variation (see Chapter 4 and 6).To this end, a hydrodynamic model of high temporal and spatial resolution was constructed and calibrated for the Forsmark area. An ecosystem model was then developed and coupled to the hydrodynamic model. In turn, a detailed radionuclide model was coupled to the ecosystem model to provide detailed predictions of radionuclide transport and accumulation in the coastal ecosystem. The ecosystem and radionuclide models were developed in the equation solver MIKE ECOLab that links seamless to the MIKE3 FM hydrodynamic model. The 'standard' ECOLab ecosystem model was extended with six biological state variables, perennial macroalgae, benthic herbivors, detritus feeders, planktivorus fish and, benthic predators representing the relict isopod Saduria and cod. In contrast to the ecosystem model, the radionuclide model was developed from scratch but building on the structure of the ecosystem model and using the output (process rates linking state variables) from the ecosystem model as input to the radionuclide model. Both the ecosystem model and the radionuclide model were run for several years (5-8 years) to bring state variables into quasi

  4. Models for transport and fate of carbon, nutrients and radionuclides in the aquatic ecosystem at Oeregrundsgrepen

    Energy Technology Data Exchange (ETDEWEB)

    Erichsen, Anders Christian; Moehlenberg, Flemming; Closter, Rikke Margrethe; Sandberg, Johannes [DHI, Hoersholm (Denmark)

    2010-06-15

    The aim of the work was to provide supplementary input to the risk assessment of a planned final nuclear waste repository at Forsmark. The main deliverable was a computed water exchange between basins in the Forsmark marine area for the period 6500 BC to 9000 AD - based on the hydrodynamic modelling - to be used as input to the landscape dose model. In addition and what is described in this report, a second deliverable was development and application of high-resolution models for the marine ecosystem and radionuclide processes. The purpose of this deliverable was to illustrate the spatial and temporal variation in important processes and parameters, while constituting a complement to previous modelling approaches and providing supporting information to discussions of the marine ecosystem, parameters and variation (see Chapter 4 and 6).To this end, a hydrodynamic model of high temporal and spatial resolution was constructed and calibrated for the Forsmark area. An ecosystem model was then developed and coupled to the hydrodynamic model. In turn, a detailed radionuclide model was coupled to the ecosystem model to provide detailed predictions of radionuclide transport and accumulation in the coastal ecosystem. The ecosystem and radionuclide models were developed in the equation solver MIKE ECOLab that links seamless to the MIKE3 FM hydrodynamic model. The 'standard' ECOLab ecosystem model was extended with six biological state variables, perennial macroalgae, benthic herbivors, detritus feeders, planktivorus fish and, benthic predators representing the relict isopod Saduria and cod. In contrast to the ecosystem model, the radionuclide model was developed from scratch but building on the structure of the ecosystem model and using the output (process rates linking state variables) from the ecosystem model as input to the radionuclide model. Both the ecosystem model and the radionuclide model were run for several years (5-8 years) to bring state variables into quasi

  5. A terrestrial ecosystem model (SOLVEG) coupled with atmospheric gas and aerosol exchange processes

    International Nuclear Information System (INIS)

    Katata, Genki; Ota, Masakazu

    2017-01-01

    In order to predict the impact of atmospheric pollutants (gases and aerosols) to the terrestrial ecosystem, new schemes for calculating the processes of dry deposition of gases and aerosols, and water and carbon cycles in terrestrial ecosystems were implemented in the one-dimensional atmosphere-SOiL-VEGetation model, SOLVEG. We made performance tests at various vegetation areas to validate the newly developed schemes. In this report, the detail in each modeled process is described with an instruction how to use the modified SOLVEG. The framework of 'terrestrial ecosystem model' was developed for investigation of a change in water, energy, and carbon cycles associated with global warming and air pollution and its impact on terrestrial ecosystems. (author)

  6. Intelligent Model Management in a Forest Ecosystem Management Decision Support System

    Science.gov (United States)

    Donald Nute; Walter D. Potter; Frederick Maier; Jin Wang; Mark Twery; H. Michael Rauscher; Peter Knopp; Scott Thomasma; Mayukh Dass; Hajime Uchiyama

    2002-01-01

    Decision making for forest ecosystem management can include the use of a wide variety of modeling tools. These tools include vegetation growth models, wildlife models, silvicultural models, GIS, and visualization tools. NED-2 is a robust, intelligent, goal-driven decision support system that integrates tools in each of these categories. NED-2 uses a blackboard...

  7. The sensitivity of ecosystem service models to choices of input data and spatial resolution

    Science.gov (United States)

    Kenneth J. Bagstad; Erika Cohen; Zachary H. Ancona; Steven. G. McNulty; Ge   Sun

    2018-01-01

    Although ecosystem service (ES) modeling has progressed rapidly in the last 10–15 years, comparative studies on data and model selection effects have become more common only recently. Such studies have drawn mixed conclusions about whether different data and model choices yield divergent results. In this study, we compared the results of different models to address...

  8. Modelling impacts of second generation bioenergy production on Ecosystem Services in Europe

    Science.gov (United States)

    Henner, Dagmar; Smith, Pete; Davies, Christian; McNamara, Niall

    2016-04-01

    Bioenergy crops are an important source of renewable energy and are a possible mechanism to mitigate global climate warming, by replacing fossil fuel energy with higher greenhouse gas emissions. There is, however, uncertainty about the impacts of the growth of bioenergy crops on ecosystem services. This uncertainty is further enhanced by the unpredictable climate change currently going on. The goal of this project is to develop a comprehensive model that covers high impact, policy relevant ecosystem services at a Continental scale including biodiversity and pollination, water and air security, erosion control and soil security, GHG emissions, soil C and cultural services like tourism value. The technical distribution potential and likely yield of second generation energy crops, such as Miscanthus, Short Rotation Coppice (SRC) with willow, poplar, eucalyptus and other broadleaf species and Short Rotation Forestry (SRF), is currently being modelled using ECOSSE, DayCent, SalixFor and MiscanFor, and ecosystem models will be used to examine the impacts of these crops on ecosystem services. The project builds on models of energy crop production, biodiversity, soil impacts, greenhouse gas emissions and other ecosystem services, and on work undertaken in the UK on the ETI-funded ELUM project (www.elum.ac.uk). In addition, methods like water footprint tools, tourism value maps and ecosystem valuation tools and models (e.g. InVest, TEEB database, GREET LCA Model, World Business Council for Sustainable Development corporate ecosystem valuation, Millennium Ecosystem Assessment and the Ecosystem Services Framework) will be utilised. Research will focus on optimisation of land use change feedbacks on above named ecosystem services, impact on food security, land management practices and impacts from climate change. We will present results for GHG emissions and soil organic carbon change after different land use change scenarios (e.g. arable to Miscanthus, forest to SRF), and

  9. Development of the BIOME-BGC model for the simulation of managed Moso bamboo forest ecosystems.

    Science.gov (United States)

    Mao, Fangjie; Li, Pingheng; Zhou, Guomo; Du, Huaqiang; Xu, Xiaojun; Shi, Yongjun; Mo, Lufeng; Zhou, Yufeng; Tu, Guoqing

    2016-05-01

    Numerical models are the most appropriate instrument for the analysis of the carbon balance of terrestrial ecosystems and their interactions with changing environmental conditions. The process-based model BIOME-BGC is widely used in simulation of carbon balance within vegetation, litter and soil of unmanaged ecosystems. For Moso bamboo forests, however, simulations with BIOME-BGC are inaccurate in terms of the growing season and the carbon allocation, due to the oversimplified representation of phenology. Our aim was to improve the applicability of BIOME-BGC for managed Moso bamboo forest ecosystem by implementing several new modules, including phenology, carbon allocation, and management. Instead of the simple phenology and carbon allocation representations in the original version, a periodic Moso bamboo phenology and carbon allocation module was implemented, which can handle the processes of Moso bamboo shooting and high growth during "on-year" and "off-year". Four management modules (digging bamboo shoots, selective cutting, obtruncation, fertilization) were integrated in order to quantify the functioning of managed ecosystems. The improved model was calibrated and validated using eddy covariance measurement data collected at a managed Moso bamboo forest site (Anji) during 2011-2013 years. As a result of these developments and calibrations, the performance of the model was substantially improved. Regarding the measured and modeled fluxes (gross primary production, total ecosystem respiration, net ecosystem exchange), relative errors were decreased by 42.23%, 103.02% and 18.67%, respectively. Copyright © 2015 Elsevier Ltd. All rights reserved.

  10. Global and Regional Ecosystem Modeling: Databases of Model Drivers and Validation Measurements

    Energy Technology Data Exchange (ETDEWEB)

    Olson, R.J.

    2002-03-19

    Understanding global-scale ecosystem responses to changing environmental conditions is important both as a scientific question and as the basis for making policy decisions. The confidence in regional models depends on how well the field data used to develop the model represent the region of interest, how well the environmental model driving variables (e.g., vegetation type, climate, and soils associated with a site used to parameterize ecosystem models) represent the region of interest, and how well regional model predictions agree with observed data for the region. To assess the accuracy of global model forecasts of terrestrial carbon cycling, two Ecosystem Model-Data Intercomparison (EMDI) workshops were held (December 1999 and April 2001). The workshops included 17 biogeochemical, satellite-driven, detailed process, and dynamic vegetation global model types. The approach was to run regional or global versions of the models for sites with net primary productivity (NPP) measurements (i.e., not fine-tuned for specific site conditions) and analyze the model-data differences. Extensive worldwide NPP data were assembled with model driver data, including vegetation, climate, and soils data, to perform the intercomparison. This report describes the compilation of NPP estimates for 2,523 sites and 5,164 0.5{sup o}-grid cells under the Global Primary Production Data Initiative (GPPDI) and the results of the EMDI review and outlier analysis that produced a refined set of NPP estimates and model driver data. The EMDI process resulted in 81 Class A sites, 933 Class B sites, and 3,855 Class C cells derived from the original synthesis of NPP measurements and associated driver data. Class A sites represent well-documented study sites that have complete aboveground and below ground NPP measurements. Class B sites represent more numerous ''extensive'' sites with less documentation and site-specific information available. Class C cells represent estimates of

  11. A New Conceptual Model for Business Ecosystem Visualization and Analysis

    Directory of Open Access Journals (Sweden)

    Luiz Felipe Hupsel Vaz

    2013-01-01

    Full Text Available This study has the objective of plotting the effects of network externalities and superstar software for the visualization and analysis of industry ecosystems. The output is made possible by gathering sales from a tracking website, associating each sale to a single consumer and by using a network visualization software. The result is a graph that shows strategic positioning of publishers and platforms, serving as a strategic tool for both academics and professionals. The approach is scalable to other industries and can be used to support analysis on mergers, acquisitions and alliances.

  12. Modeling Carbon Turnover in Five Terrestrial Ecosystems in the Boreal Zone Using Multiple Criteria of Acceptance

    International Nuclear Information System (INIS)

    Karlberg, Louise; Gustafsson, David; Jansson, Per-Erik

    2006-01-01

    Estimates of carbon fluxes and turnover in ecosystems are key elements in the understanding of climate change and in predicting the accumulation of trace elements in the biosphere. In this paper we present estimates of carbon fluxes and turnover times for five terrestrial ecosystems using a modeling approach. Multiple criteria of acceptance were used to parameterize the model, thus incorporating large amounts of multi-faceted empirical data in the simulations in a standardized manner. Mean turnover times of carbon were found to be rather similar between systems with a few exceptions, even though the size of both the pools and the fluxes varied substantially. Depending on the route of the carbon through the ecosystem, turnover times varied from less than one year to more than one hundred, which may be of importance when considering trace element transport and retention. The parameterization method was useful both in the estimation of unknown parameters, and to identify variability in carbon turnover in the selected ecosystems

  13. Modelling carbon cycle of agro-forest ecosystems in Lombardy (Italy

    Directory of Open Access Journals (Sweden)

    Colombo R

    2009-09-01

    Full Text Available In this paper we present a methodology for the estimation of Gross Primary Production (GPP, Net Primary Production (NPP and Net Ecosystem Production (NEP for the main agricultural and forest ecosystems of the Lombardia Region (Italy. The MOD17 model was parameterized according to the different agro-forestry ecosystems and applied at regional scale by using satellite data with a spatial resolution of 250m. The high spatial resolution along with fine classification agro-forestry ecosystems has allowed to accurately analyze the carbon budget of an extremely fragmented and complex environment such as the Lombardia Region. Modeling results showed the role of the forests in the carbon budget at regional scale and represent important information layer for the spatial analysis and for inferring the inter-annual variability of carbon sequestration due to impacts of extreme events and recent climate change (e.g., drought, heat wave, flooding, fires.

  14. Seasonal variability in the persistence of dissolved environmental DNA (eDNA in a marine system: The role of microbial nutrient limitation.

    Directory of Open Access Journals (Sweden)

    Ian Salter

    be linked to the metabolic response of microbial communities to nutrient limitation. Future studies should consider the effect of natural environmental gradients on the seasonal persistence of eDNA, which will be of particular relevance for time-series biomonitoring programs.

  15. Improving the precision of lake ecosystem metabolism estimates by identifying predictors of model uncertainty

    Science.gov (United States)

    Rose, Kevin C.; Winslow, Luke A.; Read, Jordan S.; Read, Emily K.; Solomon, Christopher T.; Adrian, Rita; Hanson, Paul C.

    2014-01-01

    Diel changes in dissolved oxygen are often used to estimate gross primary production (GPP) and ecosystem respiration (ER) in aquatic ecosystems. Despite the widespread use of this approach to understand ecosystem metabolism, we are only beginning to understand the degree and underlying causes of uncertainty for metabolism model parameter estimates. Here, we present a novel approach to improve the precision and accuracy of ecosystem metabolism estimates by identifying physical metrics that indicate when metabolism estimates are highly uncertain. Using datasets from seventeen instrumented GLEON (Global Lake Ecological Observatory Network) lakes, we discovered that many physical characteristics correlated with uncertainty, including PAR (photosynthetically active radiation, 400-700 nm), daily variance in Schmidt stability, and wind speed. Low PAR was a consistent predictor of high variance in GPP model parameters, but also corresponded with low ER model parameter variance. We identified a threshold (30% of clear sky PAR) below which GPP parameter variance increased rapidly and was significantly greater in nearly all lakes compared with variance on days with PAR levels above this threshold. The relationship between daily variance in Schmidt stability and GPP model parameter variance depended on trophic status, whereas daily variance in Schmidt stability was consistently positively related to ER model parameter variance. Wind speeds in the range of ~0.8-3 m s–1 were consistent predictors of high variance for both GPP and ER model parameters, with greater uncertainty in eutrophic lakes. Our findings can be used to reduce ecosystem metabolism model parameter uncertainty and identify potential sources of that uncertainty.

  16. Global sensitivity analysis of DRAINMOD-FOREST, an integrated forest ecosystem model

    Science.gov (United States)

    Shiying Tian; Mohamed A. Youssef; Devendra M. Amatya; Eric D. Vance

    2014-01-01

    Global sensitivity analysis is a useful tool to understand process-based ecosystem models by identifying key parameters and processes controlling model predictions. This study reported a comprehensive global sensitivity analysis for DRAINMOD-FOREST, an integrated model for simulating water, carbon (C), and nitrogen (N) cycles and plant growth in lowland forests. The...

  17. Activation of the marine ecosystem model 3D CEMBS for the Baltic Sea in operational mode

    Science.gov (United States)

    Dzierzbicka-Glowacka, Lidia; Jakacki, Jaromir; Janecki, Maciej; Nowicki, Artur

    2013-04-01

    The paper presents a new marine ecosystem model 3D CEMBS designed for the Baltic Sea. The ecosystem model is incorporated into the 3D POPCICE ocean-ice model. The Current Baltic Sea model is based on the Community Earth System Model (CESM from the National Center for Atmospheric Research) which was adapted for the Baltic Sea as a coupled sea-ice model. It consists of the Community Ice Code (CICE model, version 4.0) and the Parallel Ocean Program (version 2.1). The ecosystem model is a biological submodel of the 3D CEMBS. It consists of eleven mass conservation equations. There are eleven partial second-order differential equations of the diffusion type with the advective term for phytoplankton, zooplankton, nutrients, dissolved oxygen, and dissolved and particulate organic matter. This model is an effective tool for solving the problem of ecosystem bioproductivity. The model is forced by 48-hour atmospheric forecasts provided by the UM model from the Interdisciplinary Centre for Mathematical and Computational Modelling of Warsaw University (ICM). The study was financially supported by the Polish State Committee of Scientific Research (grants: No N N305 111636, N N306 353239). The partial support for this study was also provided by the project Satellite Monitoring of the Baltic Sea Environment - SatBaltyk founded by European Union through European Regional Development Fund contract no. POIG 01.01.02-22-011/09. Calculations were carried out at the Academy Computer Centre in Gdańsk.

  18. Variable selection for modelling effects of eutrophication on stream and river ecosystems

    NARCIS (Netherlands)

    Nijboer, R.C.; Verdonschot, P.F.M.

    2004-01-01

    Models are needed for forecasting the effects of eutrophication on stream and river ecosystems. Most of the current models do not include differences in local stream characteristics and effects on the biota. To define the most important variables that should be used in a stream eutrophication model,

  19. Assessment of Urban Ecosystem Health Based on Entropy Weight Extension Decision Model in Urban Agglomeration

    Directory of Open Access Journals (Sweden)

    Qian Yang

    2016-08-01

    Full Text Available Urban ecosystem health evaluation can assist in sustainable ecological management at a regional level. This study examined urban agglomeration ecosystem health in the middle reaches of the Yangtze River with entropy weight and extension theories. The model overcomes information omissions and subjectivity problems in the evaluation process of urban ecosystem health. Results showed that human capital and education, economic development level as well as urban infrastructure have a significant effect on the health states of urban agglomerations. The health status of the urban agglomeration’s ecosystem was not optimistic in 2013. The majority of the cities were unhealthy or verging on unhealthy, accounting for 64.52% of the total number of cities in the urban agglomeration. The regional differences of the 31 cities’ ecosystem health are significant. The cause originated from an imbalance in economic development and the policy guidance of city development. It is necessary to speed up the integration process to promote coordinated regional development. The present study will aid us in understanding and advancing the health situation of the urban ecosystem in the middle reaches of the Yangtze River and will provide an efficient urban ecosystem health evaluation method that can be used in other areas.

  20. Exploring spatial change and gravity center movement for ecosystem services value using a spatially explicit ecosystem services value index and gravity model.

    Science.gov (United States)

    He, Yingbin; Chen, Youqi; Tang, Huajun; Yao, Yanmin; Yang, Peng; Chen, Zhongxin

    2011-04-01

    Spatially explicit ecosystem services valuation and change is a newly developing area of research in the field of ecology. Using the Beijing region as a study area, the authors have developed a spatially explicit ecosystem services value index and implemented this to quantify and spatially differentiate ecosystem services value at 1-km grid resolution. A gravity model was developed to trace spatial change in the total ecosystem services value of the Beijing study area from a holistic point of view. Study results show that the total value of ecosystem services for the study area decreased by 19.75% during the period 1996-2006 (3,226.2739 US$×10(6) in 1996, 2,589.0321 US$×10(6) in 2006). However, 27.63% of the total area of the Beijing study area increased in ecosystem services value. Spatial differences in ecosystem services values for both 1996 and 2006 are very clear. The center of gravity of total ecosystem services value for the study area moved 32.28 km northwestward over the 10 years due to intensive human intervention taking place in southeast Beijing. The authors suggest that policy-makers should pay greater attention to ecological protection under conditions of rapid socio-economic development and increase the area of green belt in the southeastern part of Beijing.

  1. Linking hydrology, ecosystem function, and livelihood sustainability in African papyrus wetlands using a Bayesian Network Model

    Science.gov (United States)

    van Dam, A.; Gettel, G. M.; Kipkemboi, J.; Rahman, M. M.

    2011-12-01

    Papyrus wetlands in East Africa provide ecosystem services supporting the livelihoods of millions but are rapidly degrading due to economic development. For ecosystem conservation, an integrated understanding of the natural and social processes driving ecosystem change is needed. This research focuses on integrating the causal relationships between hydrology, ecosystem function, and livelihood sustainability in Nyando wetland, western Kenya. Livelihood sustainability is based on ecosystem services that include plant and animal harvest for building material and food, conversion of wetlands to crop and grazing land, water supply, and water quality regulation. Specific objectives were: to integrate studies of hydrology, ecology, and livelihood activities using a Bayesian Network (BN) model and include stakeholder involvement in model development. The BN model (Netica 4.16) had 35 nodes with seven decision nodes describing demography, economy, papyrus market, and rainfall, and two target nodes describing ecosystem function (defined by groundwater recharge, nutrient and sediment retention, and biodiversity) and livelihood sustainability (drinking water supply, crop production, livestock production, and papyrus yield). The conditional probability tables were populated using results of ecohydrological and socio-economic field work and consultations with stakeholders. The model was evaluated for an average year with decision node probabilities set according to data from research, expert opinion, and stakeholders' views. Then, scenarios for dry and wet seasons and for economic development (low population growth and unemployment) and policy development (more awareness of wetland value) were evaluated. In an average year, the probability for maintaining a "good" level of sediment and nutrient retention functions, groundwater recharge, and biodiversity was about 60%. ("Good" is defined by expert opinion based on ongoing field research.) In the dry season, the probability was

  2. An Integrated Coral Reef Ecosystem Model to Support Resource Management under a Changing Climate.

    Science.gov (United States)

    Weijerman, Mariska; Fulton, Elizabeth A; Kaplan, Isaac C; Gorton, Rebecca; Leemans, Rik; Mooij, Wolf M; Brainard, Russell E

    2015-01-01

    Millions of people rely on the ecosystem services provided by coral reefs, but sustaining these benefits requires an understanding of how reefs and their biotic communities are affected by local human-induced disturbances and global climate change. Ecosystem-based management that explicitly considers the indirect and cumulative effects of multiple disturbances has been recommended and adopted in policies in many places around the globe. Ecosystem models give insight into complex reef dynamics and their responses to multiple disturbances and are useful tools to support planning and implementation of ecosystem-based management. We adapted the Atlantis Ecosystem Model to incorporate key dynamics for a coral reef ecosystem around Guam in the tropical western Pacific. We used this model to quantify the effects of predicted climate and ocean changes and current levels of current land-based sources of pollution (LBSP) and fishing. We used the following six ecosystem metrics as indicators of ecosystem state, resilience and harvest potential: 1) ratio of calcifying to non-calcifying benthic groups, 2) trophic level of the community, 3) biomass of apex predators, 4) biomass of herbivorous fishes, 5) total biomass of living groups and 6) the end-to-start ratio of exploited fish groups. Simulation tests of the effects of each of the three drivers separately suggest that by mid-century climate change will have the largest overall effect on this suite of ecosystem metrics due to substantial negative effects on coral cover. The effects of fishing were also important, negatively influencing five out of the six metrics. Moreover, LBSP exacerbates this effect for all metrics but not quite as badly as would be expected under additive assumptions, although the magnitude of the effects of LBSP are sensitive to uncertainty associated with primary productivity. Over longer time spans (i.e., 65 year simulations), climate change impacts have a slight positive interaction with other drivers

  3. An Integrated Coral Reef Ecosystem Model to Support Resource Management under a Changing Climate.

    Directory of Open Access Journals (Sweden)

    Mariska Weijerman

    Full Text Available Millions of people rely on the ecosystem services provided by coral reefs, but sustaining these benefits requires an understanding of how reefs and their biotic communities are affected by local human-induced disturbances and global climate change. Ecosystem-based management that explicitly considers the indirect and cumulative effects of multiple disturbances has been recommended and adopted in policies in many places around the globe. Ecosystem models give insight into complex reef dynamics and their responses to multiple disturbances and are useful tools to support planning and implementation of ecosystem-based management. We adapted the Atlantis Ecosystem Model to incorporate key dynamics for a coral reef ecosystem around Guam in the tropical western Pacific. We used this model to quantify the effects of predicted climate and ocean changes and current levels of current land-based sources of pollution (LBSP and fishing. We used the following six ecosystem metrics as indicators of ecosystem state, resilience and harvest potential: 1 ratio of calcifying to non-calcifying benthic groups, 2 trophic level of the community, 3 biomass of apex predators, 4 biomass of herbivorous fishes, 5 total biomass of living groups and 6 the end-to-start ratio of exploited fish groups. Simulation tests of the effects of each of the three drivers separately suggest that by mid-century climate change will have the largest overall effect on this suite of ecosystem metrics due to substantial negative effects on coral cover. The effects of fishing were also important, negatively influencing five out of the six metrics. Moreover, LBSP exacerbates this effect for all metrics but not quite as badly as would be expected under additive assumptions, although the magnitude of the effects of LBSP are sensitive to uncertainty associated with primary productivity. Over longer time spans (i.e., 65 year simulations, climate change impacts have a slight positive interaction with

  4. Exploring the Red Sea seasonal ecosystem functioning using a three-dimensional biophysical model

    KAUST Repository

    Triantafyllou, G.; Yao, F.; Petihakis, G.; Tsiaras, K. P.; Raitsos, D. E.; Hoteit, Ibrahim

    2014-01-01

    The Red Sea exhibits complex hydrodynamic and biogeochemical dynamics, which vary both in time and space. These dynamics have been explored through the development and application of a 3-D ecosystem model. The simulation system comprises two off-line coupled submodels: the MIT General Circulation Model (MITgcm) and the European Regional Seas Ecosystem Model (ERSEM), both adapted for the Red Sea. The results from an annual simulation under climatological forcing are presented. Simulation results are in good agreement with satellite and in situ data illustrating the role of the physical processes in determining the evolution and variability of the Red Sea ecosystem. The model was able to reproduce the main features of the Red Sea ecosystem functioning, including the exchange with the Gulf of Aden, which is a major driving mechanism for the whole Red Sea ecosystem and the winter overturning taking place in the north. Some model limitations, mainly related to the dynamics of the extended reef system located in the southern part of the Red Sea, which is not currently represented in the model, still need to be addressed.

  5. Exploring the Red Sea seasonal ecosystem functioning using a three-dimensional biophysical model

    KAUST Repository

    Triantafyllou, G.

    2014-03-01

    The Red Sea exhibits complex hydrodynamic and biogeochemical dynamics, which vary both in time and space. These dynamics have been explored through the development and application of a 3-D ecosystem model. The simulation system comprises two off-line coupled submodels: the MIT General Circulation Model (MITgcm) and the European Regional Seas Ecosystem Model (ERSEM), both adapted for the Red Sea. The results from an annual simulation under climatological forcing are presented. Simulation results are in good agreement with satellite and in situ data illustrating the role of the physical processes in determining the evolution and variability of the Red Sea ecosystem. The model was able to reproduce the main features of the Red Sea ecosystem functioning, including the exchange with the Gulf of Aden, which is a major driving mechanism for the whole Red Sea ecosystem and the winter overturning taking place in the north. Some model limitations, mainly related to the dynamics of the extended reef system located in the southern part of the Red Sea, which is not currently represented in the model, still need to be addressed.

  6. A spatial ecosystem and populations dynamics model (SEAPODYM) Modeling of tuna and tuna-like populations

    Science.gov (United States)

    Lehodey, Patrick; Senina, Inna; Murtugudde, Raghu

    2008-09-01

    An enhanced version of the spatial ecosystem and population dynamics model SEAPODYM is presented to describe spatial dynamics of tuna and tuna-like species in the Pacific Ocean at monthly resolution over 1° grid-boxes. The simulations are driven by a bio-physical environment predicted from a coupled ocean physical-biogeochemical model. This new version of SEAPODYM includes expanded definitions of habitat indices, movements, and natural mortality based on empirical evidences. A thermal habitat of tuna species is derived from an individual heat budget model. The feeding habitat is computed according to the accessibility of tuna predator cohorts to different vertically migrating and non-migrating micronekton (mid-trophic) functional groups. The spawning habitat is based on temperature and the coincidence of spawning fish with presence or absence of predators and food for larvae. The successful larval recruitment is linked to spawning stock biomass. Larvae drift with currents, while immature and adult tuna can move of their own volition, in addition to being advected by currents. A food requirement index is computed to adjust locally the natural mortality of cohorts based on food demand and accessibility to available forage components. Together these mechanisms induce bottom-up and top-down effects, and intra- (i.e. between cohorts) and inter-species interactions. The model is now fully operational for running multi-species, multi-fisheries simulations, and the structure of the model allows a validation from multiple data sources. An application with two tuna species showing different biological characteristics, skipjack ( Katsuwonus pelamis) and bigeye ( Thunnus obesus), is presented to illustrate the capacity of the model to capture many important features of spatial dynamics of these two different tuna species in the Pacific Ocean. The actual validation is presented in a companion paper describing the approach to have a rigorous mathematical parameter optimization

  7. Value Creation in the Internet of Things: Mapping Business Models and Ecosystem Roles

    Directory of Open Access Journals (Sweden)

    Heini Ikävalko

    2018-03-01

    Full Text Available The increasing connectivity provided by the Internet of Things (IoT supports novel business opportunities for actors in overlapping service systems. Therefore, the co-creative nature of IoT business needs to be further studied. This article reports an empirical study on a European IoT initiative. It contributes to the understudied area of IoT ecosystem dynamics by describing different actor roles and activities in the IoT use cases, and their implications for value creation in IoT ecosystems. Our findings show how IoT ecosystem actors may take the roles of ideator, designer, or intermediary in different IoT design layers, and we recommend this perspective to better understand and describe ecosystem business models. We also discuss the theoretical and managerial implications of our findings.

  8. Evolving software products, the design of a water-related modeling software ecosystem

    DEFF Research Database (Denmark)

    Manikas, Konstantinos

    2017-01-01

    more than 50 years ago. However, a radical change of software products to evolve both in the software engineering as much as the organizational and business aspects in a disruptive manner are rather rare. In this paper, we report on the transformation of one of the market leader product series in water......-related calculation and modeling from a traditional business-as-usual series of products to an evolutionary software ecosystem. We do so by relying on existing concepts on software ecosystem analysis to analyze the future ecosystem. We report and elaborate on the main focus points necessary for this transition. We...... argue for the generalization of our focus points to the transition from traditional business-as-usual software products to software ecosystems....

  9. Ecosystem services sustainability in the Mediterranean Sea: assessment of status and trends using multiple modelling approaches

    Science.gov (United States)

    Liquete, Camino; Piroddi, Chiara; Macías, Diego; Druon, Jean-Noël; Zulian, Grazia

    2016-09-01

    Mediterranean ecosystems support important processes and functions that bring direct benefits to human society. Yet, marine ecosystem services are usually overlooked due to the challenges in identifying and quantifying them. This paper proposes the application of several biophysical and ecosystem modelling approaches to assess spatially and temporally the sustainable use and supply of selected marine ecosystem services. Such services include food provision, water purification, coastal protection, lifecycle maintenance and recreation, focusing on the Mediterranean region. Overall, our study found a higher number of decreasing than increasing trends in the natural capacity of the ecosystems to provide marine and coastal services, while in contrast the opposite was observed to be true for the realised flow of services to humans. Such a study paves the way towards an effective support for Blue Growth and the European maritime policies, although little attention is paid to the quantification of marine ecosystem services in this context. We identify a key challenge of integrating biophysical and socio-economic models as a necessary step to further this research.

  10. A multi-model analysis of risk of ecosystem shifts under climate change

    International Nuclear Information System (INIS)

    Warszawski, Lila; Ostberg, Sebastian; Frieler, Katja; Lucht, Wolfgang; Schaphoff, Sibyll; Buechner, Matthias; Piontek, Franziska; Friend, Andrew; Keribin, Rozenn; Rademacher, Tim Tito; Beerling, David; Lomas, Mark; Cadule, Patricia; Ciais, Philippe; Clark, Douglas B; Kahana, Ron; Ito, Akihiko; Nishina, Kazuya; Kleidon, Axel; Pavlick, Ryan

    2013-01-01

    Climate change may pose a high risk of change to Earth’s ecosystems: shifting climatic boundaries may induce changes in the biogeochemical functioning and structures of ecosystems that render it difficult for endemic plant and animal species to survive in their current habitats. Here we aggregate changes in the biogeochemical ecosystem state as a proxy for the risk of these shifts at different levels of global warming. Estimates are based on simulations from seven global vegetation models (GVMs) driven by future climate scenarios, allowing for a quantification of the related uncertainties. 5–19% of the naturally vegetated land surface is projected to be at risk of severe ecosystem change at 2 ° C of global warming (ΔGMT) above 1980–2010 levels. However, there is limited agreement across the models about which geographical regions face the highest risk of change. The extent of regions at risk of severe ecosystem change is projected to rise with ΔGMT, approximately doubling between ΔGMT = 2 and 3 ° C, and reaching a median value of 35% of the naturally vegetated land surface for ΔGMT = 4 °C. The regions projected to face the highest risk of severe ecosystem changes above ΔGMT = 4 °C or earlier include the tundra and shrublands of the Tibetan Plateau, grasslands of eastern India, the boreal forests of northern Canada and Russia, the savanna region in the Horn of Africa, and the Amazon rainforest. (letter)

  11. Carbon and energy fluxes in cropland ecosystems: a model-data comparison

    Energy Technology Data Exchange (ETDEWEB)

    Lokupitiya, E.; Denning, A. S.; Schaefer, K.; Ricciuto, D.; Anderson, R.; Arain, M. A.; Baker, I.; Barr, A. G.; Chen, G.; Chen, J. M.; Ciais, P.; Cook, D. R.; Dietze, M.; El Maayar, M.; Fischer, M.; Grant, R.; Hollinger, D.; Izaurralde, C.; Jain, A.; Kucharik, C.; Li, Z.; Liu, S.; Li, L.; Matamala, R.; Peylin, P.; Price, D.; Running, S. W.; Sahoo, A.; Sprintsin, M.; Suyker, A. E.; Tian, H.; Tonitto, C.; Torn, M.; Verbeeck, Hans; Verma, S. B.; Xue, Y.

    2016-06-03

    Croplands are highly productive ecosystems that contribute to land–atmosphere exchange of carbon, energy, and water during their short growing seasons. We evaluated and compared net ecosystem exchange (NEE), latent heat flux (LE), and sensible heat flux (H) simulated by a suite of ecosystem models at five agricultural eddy covariance flux tower sites in the central United States as part of the North American Carbon Program Site Synthesis project. Most of the models overestimated H and underestimated LE during the growing season, leading to overall higher Bowen ratios compared to the observations. Most models systematically under predicted NEE, especially at rain-fed sites. Certain crop-specific models that were developed considering the high productivity and associated physiological changes in specific crops better predicted the NEE and LE at both rain-fed and irrigated sites. Models with specific parameterization for different crops better simulated the inter-annual variability of NEE for maize-soybean rotation compared to those models with a single generic crop type. Stratification according to basic model formulation and phenological methodology did not explain significant variation in model performance across these sites and crops. The under prediction of NEE and LE and over prediction of H by most of the models suggests that models developed and parameterized for natural ecosystems cannot accurately predict the more robust physiology of highly bred and intensively managed crop ecosystems. When coupled in Earth System Models, it is likely that the excessive physiological stress simulated in many land surface component models leads to overestimation of temperature and atmospheric boundary layer depth, and underestimation of humidity and CO2 seasonal uptake over agricultural regions.

  12. Carbon and energy fluxes in cropland ecosystems: a model-data comparison

    Science.gov (United States)

    Lokupitiya, E.; Denning, A. Scott; Schaefer, K.; Ricciuto, D.; Anderson, R.; Arain, M. A.; Baker, I.; Barr, A. G.; Chen, G.; Chen, J.M.; Ciais, P.; Cook, D.R.; Dietze, M.C.; El Maayar, M.; Fischer, M.; Grant, R.; Hollinger, D.; Izaurralde, C.; Jain, A.; Kucharik, C.J.; Li, Z.; Liu, S.; Li, L.; Matamala, R.; Peylin, P.; Price, D.; Running, S. W.; Sahoo, A.; Sprintsin, M.; Suyker, A.E.; Tian, H.; Tonitto, Christina; Torn, M.S.; Verbeeck, Hans; Verma, S.B.; Xue, Y.

    2016-01-01

    Croplands are highly productive ecosystems that contribute to land–atmosphere exchange of carbon, energy, and water during their short growing seasons. We evaluated and compared net ecosystem exchange (NEE), latent heat flux (LE), and sensible heat flux (H) simulated by a suite of ecosystem models at five agricultural eddy covariance flux tower sites in the central United States as part of the North American Carbon Program Site Synthesis project. Most of the models overestimated H and underestimated LE during the growing season, leading to overall higher Bowen ratios compared to the observations. Most models systematically under predicted NEE, especially at rain-fed sites. Certain crop-specific models that were developed considering the high productivity and associated physiological changes in specific crops better predicted the NEE and LE at both rain-fed and irrigated sites. Models with specific parameterization for different crops better simulated the inter-annual variability of NEE for maize-soybean rotation compared to those models with a single generic crop type. Stratification according to basic model formulation and phenological methodology did not explain significant variation in model performance across these sites and crops. The under prediction of NEE and LE and over prediction of H by most of the models suggests that models developed and parameterized for natural ecosystems cannot accurately predict the more robust physiology of highly bred and intensively managed crop ecosystems. When coupled in Earth System Models, it is likely that the excessive physiological stress simulated in many land surface component models leads to overestimation of temperature and atmospheric boundary layer depth, and underestimation of humidity and CO2 seasonal uptake over agricultural regions.

  13. Ecosystem Model Performance at Wetlands: Results from the North American Carbon Program Site Synthesis

    Science.gov (United States)

    Sulman, B. N.; Desai, A. R.; Schroeder, N. M.; NACP Site Synthesis Participants

    2011-12-01

    Northern peatlands contain a significant fraction of the global carbon pool, and their responses to hydrological change are likely to be important factors in future carbon cycle-climate feedbacks. Global-scale carbon cycle modeling studies typically use general ecosystem models with coarse spatial resolution, often without peatland-specific processes. Here, seven ecosystem models were used to simulate CO2 fluxes at three field sites in Canada and the northern United States, including two nutrient-rich fens and one nutrient-poor, sphagnum-dominated bog, from 2002-2006. Flux residuals (simulated - observed) were positively correlated with measured water table for both gross ecosystem productivity (GEP) and ecosystem respiration (ER) at the two fen sites for all models, and were positively correlated with water table at the bog site for the majority of models. Modeled diurnal cycles at fen sites agreed well with eddy covariance measurements overall. Eddy covariance GEP and ER were higher during dry periods than during wet periods, while model results predicted either the opposite relationship or no significant difference. At the bog site, eddy covariance GEP had no significant dependence on water table, while models predicted higher GEP during wet periods. All models significantly over-estimated GEP at the bog site, and all but one over-estimated ER at the bog site. Carbon cycle models in peatland-rich regions could be improved by incorporating better models or measurements of hydrology and by inhibiting GEP and ER rates under saturated conditions. Bogs and fens likely require distinct treatments in ecosystem models due to differences in nutrients, peat properties, and plant communities.

  14. Modelling surface energy fluxes over a Dehesa ecosystem using a two-source energy balance model.

    Science.gov (United States)

    Andreu, Ana; Kustas, William. P.; Anderson, Martha C.; Carrara, Arnaud; Patrocinio Gonzalez-Dugo, Maria

    2013-04-01

    The Dehesa is the most widespread agroforestry land-use system in Europe, covering more than 3 million hectares in the Iberian Peninsula and Greece (Grove and Rackham, 2001; Papanastasis, 2004). It is an agro-silvo-pastural ecosystem consisting of widely-spaced oak trees (mostly Quercus ilex L.), combined with crops, pasture and Mediterranean shrubs, and it is recognized as an example of sustainable land use and for his importance in the rural economy (Diaz et al., 1997; Plieninger and Wilbrand, 2001). The ecosystem is influenced by a Mediterranean climate, with recurrent and severe droughts. Over the last decades the Dehesa has faced multiple environmental threats, derived from intensive agricultural use and socio-economic changes, which have caused environmental degradation of the area, namely reduction in tree density and stocking rates, changes in soil properties and hydrological processes and an increase of soil erosion (Coelho et al. 2004; Schnabel and Ferreira, 2004; Montoya 1998; Pulido and Díaz, 2005). Understanding the hydrological, atmospheric and physiological processes that affect the functioning of the ecosystem will improve the management and conservation of the Dehesa. One of the key metrics in assessing ecosystem health, particularly in this water-limited environment, is the capability of monitoring evaporation (ET). To make large area assessments requires the use of remote sensing. Thermal-based energy balance techniques that distinguish soil/substrate and vegetation contributions to the radiative temperature and radiation/turbulent fluxes have proven to be reliable in such semi-arid sparse canopy-cover landscapes. In particular, the two-source energy balance (TSEB) model of Norman et al. (1995) and Kustas and Norman (1999) has shown to be robust for a wide range of partially-vegetated landscapes. The TSEB formulation is evaluated at a flux tower site located in center Spain (Majadas del Tietar, Caceres). Its application in this environment is

  15. Linking ecosystem services with state-and-transition models to evaluate rangeland management decisions

    Science.gov (United States)

    Lohani, S.; Heilman, P.; deSteiguer, J. E.; Guertin, D. P.; Wissler, C.; McClaran, M. P.

    2014-12-01

    Quantifying ecosystem services is a crucial topic for land management decision making. However, market prices are usually not able to capture all the ecosystem services and disservices. Ecosystem services from rangelands, that cover 70% of the world's land area, are even less well-understood since knowledge of rangelands is limited. This study generated a management framework for rangelands that uses remote sensing to generate state and transition models (STMs) for a large area and a linear programming (LP) model that uses ecosystem services to evaluate natural and/or management induced transitions as described in the STM. The LP optimization model determines the best management plan for a plot of semi-arid land in the Empire Ranch in southeastern Arizona. The model allocated land among management activities (do nothing, grazing, fire, and brush removal) to optimize net benefits and determined the impact of monetizing environmental services and disservices on net benefits, acreage allocation and production output. The ecosystem services under study were forage production (AUM/ac/yr), sediment (lbs/ac/yr), water runoff (inches/yr), soil loss (lbs/ac/yr) and recreation (thousands of number of visitors/ac/yr). The optimization model was run for three different scenarios - private rancher, public rancher including environmental services and excluding disservices, and public rancher including both services and disservices. The net benefit was the highest for the public rancher excluding the disservices. A result from the study is a constrained optimization model that incorporates ecosystem services to analyze investments on conservation and management activities. Rangeland managers can use this model to understand and explain, not prescribe, the tradeoffs of management investments.

  16. Biogeochemical modelling vs. tree-ring data - comparison of forest ecosystem productivity estimates

    Science.gov (United States)

    Zorana Ostrogović Sever, Maša; Barcza, Zoltán; Hidy, Dóra; Paladinić, Elvis; Kern, Anikó; Marjanović, Hrvoje

    2017-04-01

    Forest ecosystems are sensitive to environmental changes as well as human-induce disturbances, therefore process-based models with integrated management modules represent valuable tool for estimating and forecasting forest ecosystem productivity under changing conditions. Biogeochemical model Biome-BGC simulates carbon, nitrogen and water fluxes, and it is widely used for different terrestrial ecosystems. It was modified and parameterised by many researchers in the past to meet the specific local conditions. In this research, we used recently published improved version of the model Biome-BGCMuSo (BBGCMuSo), with multilayer soil module and integrated management module. The aim of our research is to validate modelling results of forest ecosystem productivity (NPP) from BBGCMuSo model with observed productivity estimated from an extensive dataset of tree-rings. The research was conducted in two distinct forest complexes of managed Pedunculate oak in SE Europe (Croatia), namely Pokupsko basin and Spačva basin. First, we parameterized BBGCMuSo model at a local level using eddy-covariance (EC) data from Jastrebarsko EC site. Parameterized model was used for the assessment of productivity on a larger scale. Results of NPP assessment with BBGCMuSo are compared with NPP estimated from tree ring data taken from trees on over 100 plots in both forest complexes. Keywords: Biome-BGCMuSo, forest productivity, model parameterization, NPP, Pedunculate oak

  17. Bayesian calibration of terrestrial ecosystem models: a study of advanced Markov chain Monte Carlo methods

    Science.gov (United States)

    Lu, Dan; Ricciuto, Daniel; Walker, Anthony; Safta, Cosmin; Munger, William

    2017-09-01

    Calibration of terrestrial ecosystem models is important but challenging. Bayesian inference implemented by Markov chain Monte Carlo (MCMC) sampling provides a comprehensive framework to estimate model parameters and associated uncertainties using their posterior distributions. The effectiveness and efficiency of the method strongly depend on the MCMC algorithm used. In this work, a differential evolution adaptive Metropolis (DREAM) algorithm is used to estimate posterior distributions of 21 parameters for the data assimilation linked ecosystem carbon (DALEC) model using 14 years of daily net ecosystem exchange data collected at the Harvard Forest Environmental Measurement Site eddy-flux tower. The calibration of DREAM results in a better model fit and predictive performance compared to the popular adaptive Metropolis (AM) scheme. Moreover, DREAM indicates that two parameters controlling autumn phenology have multiple modes in their posterior distributions while AM only identifies one mode. The application suggests that DREAM is very suitable to calibrate complex terrestrial ecosystem models, where the uncertain parameter size is usually large and existence of local optima is always a concern. In addition, this effort justifies the assumptions of the error model used in Bayesian calibration according to the residual analysis. The result indicates that a heteroscedastic, correlated, Gaussian error model is appropriate for the problem, and the consequent constructed likelihood function can alleviate the underestimation of parameter uncertainty that is usually caused by using uncorrelated error models.

  18. Exploring Third-Grade Student Model-Based Explanations about Plant Relationships within an Ecosystem

    Science.gov (United States)

    Zangori, Laura; Forbes, Cory T.

    2015-01-01

    Elementary students should have opportunities to develop scientific models to reason and build understanding about how and why plants depend on relationships within an ecosystem for growth and survival. However, scientific modeling practices are rarely included within elementary science learning environments and disciplinary content is often…

  19. A general equilibrium model of ecosystem services in a river basin

    Science.gov (United States)

    Travis Warziniack

    2014-01-01

    This study builds a general equilibrium model of ecosystem services, with sectors of the economy competing for use of the environment. The model recognizes that production processes in the real world require a combination of natural and human inputs, and understanding the value of these inputs and their competing uses is necessary when considering policies of resource...

  20. Predicting ecosystem functioning from plant traits: Results from a multi-scale ecophsiological modeling approach

    NARCIS (Netherlands)

    Wijk, van M.T.

    2007-01-01

    Ecosystem functioning is the result of processes working at a hierarchy of scales. The representation of these processes in a model that is mathematically tractable and ecologically meaningful is a big challenge. In this paper I describe an individual based model (PLACO¿PLAnt COmpetition) that

  1. Semantic Model of Variability and Capabilities of IoT Applications for Embedded Software Ecosystems

    DEFF Research Database (Denmark)

    Tomlein, Matus; Grønbæk, Kaj

    2016-01-01

    reasoning to resolve context requirements. We present the implications on the architecture of the ecosystem and the concepts defined in the model. Finally, we discuss the evaluation of the model and its benefits and liabilities. Although the approach results in more complex descriptions of applications, we...

  2. Study on residues of 14C-Fenitrothion in a model rice-fish ecosystem and in a field rice-fish ecosystem

    International Nuclear Information System (INIS)

    Zhang Zhongliang; Wang Huaxin; Guo Dazhi; Chen Zhiyu; Wu Suchueng

    1993-01-01

    Residues of 14 C-fenitrothion in a model rice-fish ecosystem and field rice-fish ecosystem were studied. When equal amounts of the pesticide were applied, the extractable residues in brown rice (equivalent to 34.3±1.9 μg/kg fenitrothion) and rice stems and leaves (20.9±1.5 μg/kg) of the model rice-fish ecosystem were 10-15 times higher than that of the field rice-fish ecosystem (4.48±0.13 μg/kg and 1.27±0.34 μg/kg respectively). Residues in upper part of the soil (6.50±0.1--8.10±0.2 μg/kg) and lower part of the soil (1.30±0.1--1.50±0.1 μg/kg) of the model rice-fish ecosystem were 10-40 times higher than that of the field rice-fish ecosystem (0.17±0.01 μg/kg). The extractable residues in paddy water of the model ecosystem (0.30 ± 0.01 μg/kg) were similar to that of the field ecosystem (0.20±0.02 μg/kg). When the fenitrothion was sprayed on the rice plants, residues in brown rice, fish body, soil and paddy water were lower than those when the pesticide was spread on the surface of the soil. (author). 4 refs, 2 tabs

  3. Linear compartment model of plutonium dynamics in a deciduous forest ecosystem

    International Nuclear Information System (INIS)

    Garten, C.T. Jr.; Gardner, R.H.; Dahlman, R.C.

    1977-01-01

    Systems ecology techniques have been useful in simulating the fate and dynamics of radionuclides in forest ecosystems. The applications of systems models in this context are twofold: projection of the time-dependent distribution of radioisotopes among various ecosystems components, and manipulation of the modeled system to determine the sensitivity of components to variation in transfer coefficients and, thereby, identify critical fluxes affecting system behavior. The present paper describes a systems model that projects the possible fate of plutonium in a deciduous forest ecosystem. The isotopes of interest are 239 Pu and 240 Pu which have physical half lives of 2.44 x 10 4 and 6540 years, respectively. These isotopes are indistinguishable by alpha spectrometry hence 239 Pu is used to refer to both

  4. Assimilating satellite-based canopy height within an ecosystem model to estimate aboveground forest biomass

    Science.gov (United States)

    Joetzjer, E.; Pillet, M.; Ciais, P.; Barbier, N.; Chave, J.; Schlund, M.; Maignan, F.; Barichivich, J.; Luyssaert, S.; Hérault, B.; von Poncet, F.; Poulter, B.

    2017-07-01

    Despite advances in Earth observation and modeling, estimating tropical biomass remains a challenge. Recent work suggests that integrating satellite measurements of canopy height within ecosystem models is a promising approach to infer biomass. We tested the feasibility of this approach to retrieve aboveground biomass (AGB) at three tropical forest sites by assimilating remotely sensed canopy height derived from a texture analysis algorithm applied to the high-resolution Pleiades imager in the Organizing Carbon and Hydrology in Dynamic Ecosystems Canopy (ORCHIDEE-CAN) ecosystem model. While mean AGB could be estimated within 10% of AGB derived from census data in average across sites, canopy height derived from Pleiades product was spatially too smooth, thus unable to accurately resolve large height (and biomass) variations within the site considered. The error budget was evaluated in details, and systematic errors related to the ORCHIDEE-CAN structure contribute as a secondary source of error and could be overcome by using improved allometric equations.

  5. Estimating the impacts of conservation on ecosystem services and poverty by integrating modeling and evaluation.

    Science.gov (United States)

    Ferraro, Paul J; Hanauer, Merlin M; Miteva, Daniela A; Nelson, Joanna L; Pattanayak, Subhrendu K; Nolte, Christoph; Sims, Katharine R E

    2015-06-16

    Scholars have made great advances in modeling and mapping ecosystem services, and in assigning economic values to these services. This modeling and valuation scholarship is often disconnected from evidence about how actual conservation programs have affected ecosystem services, however. Without a stronger evidence base, decision makers find it difficult to use the insights from modeling and valuation to design effective policies and programs. To strengthen the evidence base, scholars have advanced our understanding of the causal pathways between conservation actions and environmental outcomes, but their studies measure impacts on imperfect proxies for ecosystem services (e.g., avoidance of deforestation). To be useful to decision makers, these impacts must be translated into changes in ecosystem services and values. To illustrate how this translation can be done, we estimated the impacts of protected areas in Brazil, Costa Rica, Indonesia, and Thailand on carbon storage in forests. We found that protected areas in these conservation hotspots have stored at least an additional 1,000 Mt of CO2 in forests and have delivered ecosystem services worth at least $5 billion. This aggregate impact masks important spatial heterogeneity, however. Moreover, the spatial variability of impacts on carbon storage is the not the same as the spatial variability of impacts on avoided deforestation. These findings lead us to describe a research program that extends our framework to study other ecosystem services, to uncover the mechanisms by which ecosystem protection benefits humans, and to tie cost-benefit analyses to conservation planning so that we can obtain the greatest return on scarce conservation funds.

  6. Advancing research on animal-transported subsidies by integrating animal movement and ecosystem modelling.

    Science.gov (United States)

    Earl, Julia E; Zollner, Patrick A

    2017-09-01

    Connections between ecosystems via animals (active subsidies) support ecosystem services and contribute to numerous ecological effects. Thus, the ability to predict the spatial distribution of active subsidies would be useful for ecology and conservation. Previous work modelling active subsidies focused on implicit space or static distributions, which treat passive and active subsidies similarly. Active subsidies are fundamentally different from passive subsidies, because animals can respond to the process of subsidy deposition and ecosystem changes caused by subsidy deposition. We propose addressing this disparity by integrating animal movement and ecosystem ecology to advance active subsidy investigations, make more accurate predictions of subsidy spatial distributions, and enable a mechanistic understanding of subsidy spatial distributions. We review selected quantitative techniques that could be used to accomplish integration and lead to novel insights. The ultimate objective for these types of studies is predictions of subsidy spatial distributions from characteristics of the subsidy and the movement strategy employed by animals that transport subsidies. These advances will be critical in informing the management of ecosystem services, species conservation and ecosystem degradation related to active subsidies. © 2017 The Authors. Journal of Animal Ecology © 2017 British Ecological Society.

  7. Studies on Interpretive Structural Model for Forest Ecosystem Management Decision-Making

    Science.gov (United States)

    Liu, Suqing; Gao, Xiumei; Zen, Qunying; Zhou, Yuanman; Huang, Yuequn; Han, Weidong; Li, Linfeng; Li, Jiping; Pu, Yingshan

    Characterized by their openness, complexity and large scale, forest ecosystems interweave themselves with social system, economic system and other natural ecosystems, thus complicating both their researches and management decision-making. According to the theories of sustainable development, hierarchy-competence levels, cybernetics and feedback, 25 factors have been chosen from human society, economy and nature that affect forest ecosystem management so that they are systematically analyzed via developing an interpretive structural model (ISM) to reveal their relationships and positions in the forest ecosystem management. The ISM consists of 7 layers with the 3 objectives for ecosystem management being the top layer (the seventh layer). The ratio between agricultural production value and industrial production value as the bases of management decision-making in forest ecosystems becomes the first layer at the bottom because it has great impacts on the values of society and the development trends of forestry, while the factors of climatic environments, intensive management extent, management measures, input-output ratio as well as landscape and productivity are arranged from the second to sixth layers respectively.

  8. Assessment of coastal management options by means of multilayered ecosystem models

    Science.gov (United States)

    Nobre, Ana M.; Ferreira, João G.; Nunes, João P.; Yan, Xiaojun; Bricker, Suzanne; Corner, Richard; Groom, Steve; Gu, Haifeng; Hawkins, Anthony J. S.; Hutson, Rory; Lan, Dongzhao; Silva, João D. Lencart e.; Pascoe, Philip; Telfer, Trevor; Zhang, Xuelei; Zhu, Mingyuan

    2010-03-01

    This paper presents a multilayered ecosystem modelling approach that combines the simulation of the biogeochemistry of a coastal ecosystem with the simulation of the main forcing functions, such as catchment loading and aquaculture activities. This approach was developed as a tool for sustainable management of coastal ecosystems. A key feature is to simulate management scenarios that account for changes in multiple uses and enable assessment of cumulative impacts of coastal activities. The model was applied to a coastal zone in China with large aquaculture production and multiple catchment uses, and where management efforts to improve water quality are under way. Development scenarios designed in conjunction with local managers and aquaculture producers include the reduction of fish cages and treatment of wastewater. Despite the reduction in nutrient loading simulated in three different scenarios, inorganic nutrient concentrations in the bay were predicted to exceed the thresholds for poor quality defined by Chinese seawater quality legislation. For all scenarios there is still a Moderate High to High nutrient loading from the catchment, so further reductions might be enacted, together with additional decreases in fish cage culture. The model predicts that overall, shellfish production decreases by 10%-28% using any of these development scenarios, principally because shellfish growth is being sustained by the substances to be reduced for improvement of water quality. The model outcomes indicate that this may be counteracted by zoning of shellfish aquaculture at the ecosystem level in order to optimize trade-offs between productivity and environmental effects. The present case study exemplifies the value of multilayered ecosystem modelling as a tool for Integrated Coastal Zone Management and for the adoption of ecosystem approaches for marine resource management. This modelling approach can be applied worldwide, and may be particularly useful for the application of

  9. Model development of a participatory Bayesian network for coupling ecosystem services into integrated water resources management

    Science.gov (United States)

    Xue, Jie; Gui, Dongwei; Lei, Jiaqiang; Zeng, Fanjiang; Mao, Donglei; Zhang, Zhiwei

    2017-11-01

    There is an increasing consensus on the importance of coupling ecosystem services (ES) into integrated water resource management (IWRM), due to a wide range of benefits to human from the ES. This paper proposes an ES-based IWRM framework within which a participatory Bayesian network (BN) model is developed to assist with the coupling between ES and IWRM. The framework includes three steps: identifying water-related services of ecosystems; analysis of the tradeoff and synergy among users of water; and ES-based IWRM implementation using the participatory BN model. We present the development, evaluation and application of the participatory BN model with the involvement of four participant groups (stakeholders, water manager, water management experts, and research team) in Qira oasis area, Northwest China. As a typical catchment-scale region, the Qira oasis area is facing severe water competition between the demands of human activities and natural ecosystems. Results demonstrate that the BN model developed provides effective integration of ES into a quantitative IWMR framework via public negotiation and feedback. The network results, sensitivity evaluation, and management scenarios are broadly accepted by the participant groups. The intervention scenarios from the model conclude that any water management measure remains unable to sustain the ecosystem health in water-related ES. Greater cooperation among the stakeholders is highly necessary for dealing with such water conflicts. In particular, a proportion of the agricultural water saved through improving water-use efficiency should be transferred to natural ecosystems via water trade. The BN model developed is appropriate for areas throughout the world in which there is intense competition for water between human activities and ecosystems.

  10. Impaired ecosystem process despite little effects on populations: modeling combined effects of warming and toxicants.

    Science.gov (United States)

    Galic, Nika; Grimm, Volker; Forbes, Valery E

    2017-08-01

    Freshwater ecosystems are exposed to many stressors, including toxic chemicals and global warming, which can impair, separately or in combination, important processes in organisms and hence higher levels of organization. Investigating combined effects of warming and toxicants has been a topic of little research, but neglecting their combined effects may seriously misguide management efforts. To explore how toxic chemicals and warming, alone and in combination, propagate across levels of biological organization, including a key ecosystem process, we developed an individual-based model (IBM) of a freshwater amphipod detritivore, Gammarus pseudolimnaeus, feeding on leaf litter. In this IBM, life history emerges from the individuals' energy budgets. We quantified, in different warming scenarios (+1-+4 °C), the effects of hypothetical toxicants on suborganismal processes, including feeding, somatic and maturity maintenance, growth, and reproduction. Warming reduced mean adult body sizes and population abundance and biomass, but only in the warmest scenarios. Leaf litter processing, a key contributor to ecosystem functioning and service delivery in streams, was consistently enhanced by warming, through strengthened interaction between the detritivorous consumer and its resource. Toxicant effects on feeding and maintenance resulted in initially small adverse effects on consumers, but ultimately led to population extinction and loss of ecosystem process. Warming in combination with toxicants had little effect at the individual and population levels, but ecosystem process was impaired in the warmer scenarios. Our results suggest that exposure to the same amount of toxicants can disproportionately compromise ecosystem processing depending on global warming scenarios; for example, reducing organismal feeding rates by 50% will reduce resource processing by 50% in current temperature conditions, but by up to 200% with warming of 4 °C. Our study has implications for

  11. Understanding variation in ecosystem pulse responses to wetting: Benefits of data-model coupling

    Science.gov (United States)

    Jenerette, D.

    2011-12-01

    Metabolic pulses of activity are a common ecological response to intermittently available resources and in water-limited ecosystems these pulses often occur in response to wetting. Net ecosystem CO2 exchange (NEE) in response to episodic wetting events is hypothesized to have a complex trajectory reflecting the distinct responses, or "pulses", of respiration and photosynthesis. To help direct research activities a physiological-based model of whole ecosystem metabolic activity up- and down-regulation was developed to investigate ecosystem energy balance and gas exchange pulse responses following precipitation events. This model was to investigate pulse dynamics from a local network of sites in southern Arizona, a global network of eddy-covariance ecosystem monitoring sites, laboratory incubation studies, and field manipulations. Pulse responses were found to be ubiquitous across ecosystem types. These pulses had a highly variable influence on NEE following wetting, ranging from large net sinks to sources of CO2 to the atmosphere. Much of the variability in pulse responses of NEE could be described through a coupled up- and down-regulation pulse response model. Respiration pulses were hypothesized to occur through a reduction in whole ecosystem activation energy; this model was both useful and corroborated through laboratory incubation studies of soil respiration. Using the Fluxnet eddy-covariance measurement database event specific responses were combined with the pulse model into an event specific twenty-five day net flux calculation. Across all events observed a general net accumulation of CO2 following a precipitation event, with the largest net uptake within deciduous broadleaf forests and smallest within grasslands. NEE pulses favored greater uptake when pre-event ecosystem respiration rates and total precipitation were higher. While the latter was expected, the former adds to previous theory by suggesting a larger net uptake of CO2 when pre-event metabolic

  12. Capacity building for tropical coastal ecosystems management using a dynamic teaching model

    DEFF Research Database (Denmark)

    Lindberg, Annika Büchert; Nielsen, Thomas; Macintosh, Donald

    2008-01-01

    This learning opportunity illustrates effective capacity building through a dynamic teaching model that involves you and gives you personal experiences. The teaching model is easy to adapt to local environments and the learning opportunity is relevant to everyone working in coastal natural resource...... in combining knowledge and methods and applying these in a real life situation. Objectives: The participants will apply the acquired knowledge of ecosystems and project management tools when describing ecosystem services and when planning a project The participants will act as different stakeholders during...... the role play and hereby gain experience from a situation mimicking real life project situation.; The participants will experience how dynamic teaching can improve capacity building....

  13. Measuring, modeling and mapping ecosystem services in the Eastern Arc Mountains of Tanzania

    DEFF Research Database (Denmark)

    Fisher, B.; Turner, R. K.; Burgess, Neil David

    2011-01-01

    sourced data, data-driven models, and socio-economic scenarios coupled with rule-based assumptions. Here we describe the construction of this spatial information and how it can help to shed light on the complex relationships between ecological and social systems. There are obvious difficulties......In light of the significance that ecosystem service research is likely to play in linking conservation activities and human welfare, systematic approaches to measuring, modeling and mapping ecosystem services (and their value to society) are sorely needed. In this paper we outline one such approach...

  14. Qualitative models to predict impacts of human interventions in a wetland ecosystem

    Directory of Open Access Journals (Sweden)

    S. Loiselle

    2002-07-01

    Full Text Available The large shallow wetlands that dominate much of the South American continent are rich in biodiversity and complexity. Many of these undamaged ecosystems are presently being examined for their potential economic utility, putting pressure on local authorities and the conservation community to find ways of correctly utilising the available natural resources without compromising the ecosystem functioning and overall integrity. Contrary to many northern hemisphere ecosystems, there have been little long term ecological studies of these systems, leading to a lack of quantitative data on which to construct ecological or resource use models. As a result, decision makers, even well meaning ones, have difficulty in determining if particular economic activities can potentially cause significant damage to the ecosystem and how one should go about monitoring the impacts of such activities. While the direct impact of many activities is often known, the secondary indirect impacts are usually less clear and can depend on local ecological conditions.

    The use of qualitative models is a helpful tool to highlight potential feedback mechanisms and secondary effects of management action on ecosystem integrity. The harvesting of a single, apparently abundant, species can have indirect secondary effects on key trophic and abiotic compartments. In this paper, loop model analysis is used to qualitatively examine secondary effects of potential economic activities in a large wetland area in northeast Argentina, the Esteros del Ibera. Based on interaction with local actors together with observed ecological information, loop models were constructed to reflect relationships between biotic and abiotic compartments. A series of analyses were made to study the effect of different economic scenarios on key ecosystem compartments. Important impacts on key biotic compartments (phytoplankton, zooplankton, ichthyofauna, aquatic macrophytes and on the abiotic environment

  15. Computer modelling for ecosystem service assessment: Chapter 4.4

    Science.gov (United States)

    Dunford, Robert; Harrison, Paula; Bagstad, Kenneth J.

    2017-01-01

    Computer models are simplified representations of the environment that allow biophysical, ecological, and/or socio-economic characteristics to be quantified and explored. Modelling approaches differ from mapping approaches (Chapter 5) as (i) they are not forcibly spatial (although many models do produce spatial outputs); (ii) they focus on understanding and quantifying the interactions between different components of social and/or environmental systems and (iii)

  16. A Landscape-level Model for Ecosystem Restoration in the San Francisco Estuary and Its Watershed

    Directory of Open Access Journals (Sweden)

    Wim Kimmerer

    2005-03-01

    Full Text Available The CALFED Bay-Delta Program is an ambitious effort to restore ecosystems and improve reliability of ecosystem services in California’s Central Valley. Key issues for CALFED and its Ecosystem Restoration Program (ERP include (1 meeting societal demand for multiple, potentially conflicting ecosystem services; (2 the tradeoff among more or less environmentally intrusive approaches to solving problems; (3 whether restoration should focus at the ecosystem level or on individual species; (4 the appropriate response to uncertainty; and (5 the tension between action and investigation. A long-term, landscape-scale perspective is essential for framing the scientific questions underlying these broad issues. We introduce a landscape-scale conceptual model that illustrates linkages, including material flows and animal migration, among the major ecosystem components being described in detail in a series of review papers. This model shows how linkages between ecosystem components result in remote consequences of locally applied restoration actions. The network of linkages is made more complicated by human interventions, which add components not previously a part of the landscape (e.g., salmonid hatcheries and alter or even reverse causal relations. A landscape perspective also helps identify conceptual gaps in CALFED’s restoration strategy, such as climate change and human population growth, which should be explicitly considered in forecasts of the long-term prospects for restoration. A landscape perspective is no panacea; in particular, the effects of restoration at this scale will be difficult to detect. Nevertheless, we advocate integrating investigations of processes at nested, smaller scales as an approach for evaluating effects of individual restoration actions and of the entire program. We believe CALFED and other large restoration programs will be most successful if they are able to integrate both societal expectations and scientific study at the

  17. Coupling ecosystems exposure to nitrogen and species sensitivity to hypoxia: modelling marine eutrophication in LCIA

    DEFF Research Database (Denmark)

    Cosme, Nuno Miguel Dias; Koski, Marja; Hauschild, Michael Zwicky

    Characterisation modelling in Life Cycle Impact Assessment (LCIA) quantifies impacts of anthropogenic emissions by applying substance-specific impact potentials, or Characterisation Factors (CF), to the amount of substances emitted. Nitrogen (N) emissions from human activities enrich coastal marine...... ecosystems and promote planktonic growth that may lead to marine eutrophication impacts. Excessive algal biomass and dissolved oxygen (DO) depletion typify the ecosystem response to the nutrient input. The present novel method couples a mechanistic model of coastal biological processes that determines...... the ecosystem response (exposure) to anthropogenic N enrichment (eXposure Factor, XF [kgO2·kgN-1]) with the sensitivity of species exposed to oxygen-depleted waters (Effect Factor, EF [(PAF)·m3·kgO2-1], expressed as a Potentially Affected Fraction (PAF) of species). Thus, the coupled indicator (XF*EF, [(PAF)·m3...

  18. Quantifying regional changes in terrestrial carbon storage by extrapolation from local ecosystem models

    Energy Technology Data Exchange (ETDEWEB)

    King, A W

    1991-12-31

    A general procedure for quantifying regional carbon dynamics by spatial extrapolation of local ecosystem models is presented Monte Carlo simulation to calculate the expected value of one or more local models, explicitly integrating the spatial heterogeneity of variables that influence ecosystem carbon flux and storage. These variables are described by empirically derived probability distributions that are input to the Monte Carlo process. The procedure provides large-scale regional estimates based explicitly on information and understanding acquired at smaller and more accessible scales.Results are presented from an earlier application to seasonal atmosphere-biosphere CO{sub 2} exchange for circumpolar ``subarctic`` latitudes (64{degree}N-90{degree}N). Results suggest that, under certain climatic conditions, these high northern ecosystems could collectively release 0.2 Gt of carbon per year to the atmosphere. I interpret these results with respect to questions about global biospheric sinks for atmospheric CO{sub 2} .

  19. Metabolic fate of 14-C-fenitrothion in a rice field model ecosystem

    International Nuclear Information System (INIS)

    Nashriyah binti Mat; Nambu, K.; Miyashita, T.; Sakata, S.; Ohshima, M.

    1991-01-01

    Pesticide fenitrothion (Sumithion sup R)is widely used to control rice stem borer and other pests. Its metabolic fate and degradation was studied using the sup 14 C-ring labelled fenitrothion in a model ecosystem consisting of Takarazuka paddy field soil, rice plant (Oryza sativa var. nihonbare), carp fish (Cyprinus carpio L.) and dechlorinated water. Radioactive fenitrothion was applied at a normal rate as used by Japanese farmers and samples of rice plant, fish soil and water were analysed after ten days of application. Fenitrothion was readily metabolized in rice plant and fish and also readily degraded to a number of metabolites in water and flooded soil. Most of the radioactivity applied was found in the soil component of the ecosystem. A trace amount of fenitrooxon, the activated metabolite of fenitrothion was detected only in soil and water. A possible metabolic pathway of fenitrothion in the rice model ecosystem was proposed

  20. Empirical methods for modeling landscape change, ecosystem services, and biodiversity

    Science.gov (United States)

    David Lewis; Ralph. Alig

    2009-01-01

    The purpose of this paper is to synthesize recent economics research aimed at integrating discrete-choice econometric models of land-use change with spatially-explicit landscape simulations and quantitative ecology. This research explicitly models changes in the spatial pattern of landscapes in two steps: 1) econometric estimation of parcel-scale transition...

  1. Development and application of an interactive climate-ecosystem model system

    Institute of Scientific and Technical Information of China (English)

    CHEN Ming; D. Pollard

    2003-01-01

    A regional climate-ecosystem model system is developed in this study. It overcomes the weakness in traditional one-way coupling models and enables detailed description of interactive process between climate and natural ecosystem. It is applied to interaction study between monsoon climate and ecosystem in East Asia, with emphasis on future climate and ecosystem change scenario forced by doubled CO2. The climate tends to be warmer and wetter under doubled CO2 in Jianghuai and the Yangzi River valley, but it becomes warmer and drier in inland areas of northern and northwestern China. The largest changes and feedbacks between vegetation and climate occur in northern China. Northern inland ecosystems experience considerable degradation and desertification, indicating a marked sensitivity and vulnerability to climatic change. The strongest vegetation response to climate change occurs in northern China and the weakest in southern China. Vegetation feedbacks intensify warming and reduce drying due to increased CO2 during summer in northern China. Generally, vegetation-climate interactions are much stronger in northern China than in southern China.

  2. Towards operational modeling and forecasting of the Iberian shelves ecosystem.

    Directory of Open Access Journals (Sweden)

    Martinho Marta-Almeida

    Full Text Available There is a growing interest on physical and biogeochemical oceanic hindcasts and forecasts from a wide range of users and businesses. In this contribution we present an operational biogeochemical forecast system for the Portuguese and Galician oceanographic regions, where atmospheric, hydrodynamic and biogeochemical variables are integrated. The ocean model ROMS, with a horizontal resolution of 3 km, is forced by the atmospheric model WRF and includes a Nutrients-Phytoplankton-Zooplankton-Detritus biogeochemical module (NPZD. In addition to oceanographic variables, the system predicts the concentration of nitrate, phytoplankton, zooplankton and detritus (mmol N m(-3. Model results are compared against radar currents and remote sensed SST and chlorophyll. Quantitative skill assessment during a summer upwelling period shows that our modelling system adequately represents the surface circulation over the shelf including the observed spatial variability and trends of temperature and chlorophyll concentration. Additionally, the skill assessment also shows some deficiencies like the overestimation of upwelling circulation and consequently, of the duration and intensity of the phytoplankton blooms. These and other departures from the observations are discussed, their origins identified and future improvements suggested. The forecast system is the first of its kind in the region and provides free online distribution of model input and output, as well as comparisons of model results with satellite imagery for qualitative operational assessment of model skill.

  3. Comparison of a Mass Balance and an Ecosystem Model Approach when Evaluating the Carbon Cycling in a Lake Ecosystem

    International Nuclear Information System (INIS)

    Andersson, Eva; Sobek, Sebastian

    2006-01-01

    Carbon budgets are frequently used in order to understand the pathways of organic matter in ecosystems, and they also have an important function in the risk assessment of harmful substances. We compared two approaches, mass balance calculations and an ecosystem budget, to describe carbon processing in a shallow, oligotrophic hardwater lake. Both approaches come to the same main conclusion, namely that the lake is a net auto trophic ecosystem, in spite of its high dissolved organic carbon and low total phosphorus concentrations. However, there were several differences between the carbon budgets, e.g. in the rate of sedimentation and the air-water flux of CO 2 . The largest uncertainty in the mass balance is the contribution of emergent macrophytes to the carbon cycling of the lake, while the ecosystem budget is very sensitive towards the choice of conversion factors and literature values. While the mass balance calculations produced more robust results, the ecosystem budget gave valuable insights into the pathways of organic matter transfer in the ecosystem. We recommend that when using an ecosystem budget for the risk assessment of harmful substances, mass balance calculations should be performed in parallel in order to increase the robustness of the conclusions

  4. The Ecosystem Functions Model: A Tool for Restoration Planning

    National Research Council Canada - National Science Library

    Hickey, John T; Dunn, Chris N

    2004-01-01

    .... Army Corps of Engineers Hydrologic Engineering Center (HEC) is developing the EFM and envisions environmental planners, biologists, and engineers using the model to help determine whether proposed alternatives (e.g...

  5. Modeling Engineered Nanomaterials (ENMs) Fate and Transport in Aquatic Ecosystems

    Science.gov (United States)

    Under the Toxic Substances Control Act (TSCA), the Environmental Protection Agency (EPA) is required to perform new chemical reviews of engineered nanomaterials (ENMs) identified in pre-manufacture notices. However, environmental fate models developed for traditional contaminants...

  6. Business model transformation process in the context of business ecosystem

    OpenAIRE

    Heikkinen, A.-M. (Anne-Mari)

    2014-01-01

    Abstract It is current phenomena that business environment has changed and has set new requirements for companies. Companies must adapt to the changes comes from outside its normal business environment and take into consideration wider business environment where it operates. These changes also have set new demands for company business model. Companies Business models need to be changed to match state of art business environ...

  7. Climate change and Arctic ecosystems: 2. Modeling, paleodata-model comparisons, and future projections

    Science.gov (United States)

    Kaplan, J.O.; Bigelow, N.H.; Prentice, I.C.; Harrison, S.P.; Bartlein, P.J.; Christensen, T.R.; Cramer, W.; Matveyeva, N.V.; McGuire, A.D.; Murray, D.F.; Razzhivin, V.Y.; Smith, B.; Walker, D.A.; Anderson, P.M.; Andreev, A.A.; Brubaker, L.B.; Edwards, M.E.; Lozhkin, A.V.

    2003-01-01

    Large variations in the composition, structure, and function of Arctic ecosystems are determined by climatic gradients, especially of growing-season warmth, soil moisture, and snow cover. A unified circumpolar classification recognizing five types of tundra was developed. The geographic distributions of vegetation types north of 55??N, including the position of the forest limit and the distributions of the tundra types, could be predicted from climatology using a small set of plant functional types embedded in the biogeochemistry-biogeography model BIOME4. Several palaeoclimate simulations for the last glacial maximum (LGM) and mid-Holocene were used to explore the possibility of simulating past vegetation patterns, which are independently known based on pollen data. The broad outlines of observed changes in vegetation were captured. LGM simulations showed the major reduction of forest, the great extension of graminoid and forb tundra, and the restriction of low- and high-shrub tundra (although not all models produced sufficiently dry conditions to mimic the full observed change). Mid-Holocene simulations reproduced the contrast between northward forest extension in western and central Siberia and stability of the forest limit in Beringia. Projection of the effect of a continued exponential increase in atmospheric CO2 concentration, based on a transient ocean-atmosphere simulation including sulfate aerosol effects, suggests a potential for larger changes in Arctic ecosystems during the 21st century than have occurred between mid-Holocene and present. Simulated physiological effects of the CO2 increase (to > 700 ppm) at high latitudes were slight compared with the effects of the change in climate.

  8. Modeling Phosphorus Transport and Cycling in the Greater Everglades Ecosystem

    Science.gov (United States)

    James, A. I.; Grace, K. A.; Jawitz, J. W.; Muller, S.; Munoz-Carpena, R.; Flaig, E. G.

    2005-12-01

    A solute transport model was used to predict phosphorus mobility in the northern Everglades. Over the past several decades, agricultural drainage waters discharged into the northern Everglades, have been enriched in phosphorus (P) relative to the historic rainfall-driven inputs. While methods of reducing total P concentrations in the discharge water have been actively pursued through implementation of agricultural Best Management Practices (BMPs), a major parallel effort has focused on the construction of a network of constructed wetlands for P removal before these waters enter the Everglades. This study describes the development of a water quality model for P transport and cycling and its application to a large constructed wetland: Stormwater Treatment Area 1 West (STA 1W), located southeast of Lake Okeechobee on the eastern perimeter of the Everglades Agricultural Area (EAA). In STA 1W agricultural nutrients such as phosphorus (P) are removed from EAA runoff before entering the adjacent Water Conservation Areas (WCAs) and the Everglades. STA 1W is divided by levees into 4 cells, which are flooded for most of the year; thus the dominant mechanism for flow and transport is overland flow. P is removed either through deposition into sediments or is taken up by plants; in either case the soils end up being significantly enriched in P. The model has been applied and calibrated to several years of water quality data from Cell 4 within STA 1W. Most existing P models have been applied to agricultural/upland systems, with only a few relevant to treatment wetlands such as STA 1W. To ensure sufficient flexibility in selecting appropriate system components and reactions, the model has been designed to incorporate a wide range of user-selectable mechanisms for P uptake and release parameters between soils and inflowing water. The model can track a large number of mobile and nonmobile components and utilizes a Godunov-style operator-splitting technique for the transported

  9. Acclimation of Emiliania huxleyi (1516) to nutrient limitation involves precise modification of the proteome to scavenge alternative sources of N and P.

    Science.gov (United States)

    McKew, Boyd A; Metodieva, Gergana; Raines, Christine A; Metodiev, Metodi V; Geider, Richard J

    2015-10-01

    Limitation of marine primary production by the availability of nitrogen or phosphorus is common. Emiliania huxleyi, a ubiquitous phytoplankter that plays key roles in primary production, calcium carbonate precipitation and production of dimethyl sulfide, often blooms in mid-latitude at the beginning of summer when inorganic nutrient concentrations are low. To understand physiological mechanisms that allow such blooms, we examined how the proteome of E. huxleyi (strain 1516) responds to N and P limitation. We observed modest changes in much of the proteome despite large physiological changes (e.g. cellular biomass, C, N and P) associated with nutrient limitation of growth rate. Acclimation to nutrient limitation did however involve significant increases in the abundance of transporters for ammonium and nitrate under N limitation and for phosphate under P limitation. More notable were large increases in proteins involved in the acquisition of organic forms of N and P, including urea and amino acid/polyamine transporters and numerous C-N hydrolases under N limitation and a large upregulation of alkaline phosphatase under P limitation. This highly targeted reorganization of the proteome towards scavenging organic forms of macronutrients gives unique insight into the molecular mechanisms that underpin how E. huxleyi has found its niche to bloom in surface waters depleted of inorganic nutrients. © 2015 The Authors. Environmental Microbiology published by Society for Applied Microbiology and John Wiley & Sons Ltd.

  10. Suppressed translation as a mechanism of initiation of CASP8 (caspase 8)-dependent apoptosis in autophagy-deficient NSCLC cells under nutrient limitation.

    Science.gov (United States)

    Allavena, Giulia; Cuomo, Francesca; Baumgartner, Georg; Bele, Tadeja; Sellgren, Alexander Yarar; Oo, Kyaw Soe; Johnson, Kaylee; Gogvadze, Vladimir; Zhivotovsky, Boris; Kaminskyy, Vitaliy O

    2018-01-01

    Macroautophagy/autophagy inhibition under stress conditions is often associated with increased cell death. We found that under nutrient limitation, activation of CASP8/caspase-8 was significantly increased in autophagy-deficient lung cancer cells, which precedes mitochondria outer membrane permeabilization (MOMP), CYCS/cytochrome c release, and activation of CASP9/caspase-9, indicating that under such conditions the activation of CASP8 is a primary event in the initiation of apoptosis as well as essential to reduce clonogenic survival of autophagy-deficient cells. Starvation leads to suppression of CFLAR proteosynthesis and accumulation of CASP8 in SQSTM1 puncta. Overexpression of CFLARs reduces CASP8 activation and apoptosis during starvation, while its silencing promotes efficient activation of CASP8 and apoptosis in autophagy-deficient U1810 lung cancer cells even under nutrient-rich conditions. Similar to starvation, inhibition of protein translation leads to efficient activation of CASP8 and cell death in autophagy-deficient lung cancer cells. Thus, here for the first time we report that suppressed translation leads to activation of CASP8-dependent apoptosis in autophagy-deficient NSCLC cells under conditions of nutrient limitation. Our data suggest that targeting translational machinery can be beneficial for elimination of autophagy-deficient cells via the CASP8-dependent apoptotic pathway.

  11. Analysis and classification of data sets for calibration and validation of agro-ecosystem models

    DEFF Research Database (Denmark)

    Kersebaum, K C; Boote, K J; Jorgenson, J S

    2015-01-01

    Experimental field data are used at different levels of complexity to calibrate, validate and improve agro-ecosystem models to enhance their reliability for regional impact assessment. A methodological framework and software are presented to evaluate and classify data sets into four classes regar...

  12. A biologically-based individual tree model for managing the longleaf pine ecosystem

    Science.gov (United States)

    Rick Smith; Greg Somers

    1998-01-01

    Duration: 1995-present Objective: Develop a longleaf pine dynamics model and simulation system to define desirable ecosystem management practices in existing and future longleaf pine stands. Methods: Naturally-regenerated longleaf pine trees are being destructively sampled to measure their recent growth and dynamics. Soils and climate data will be combined with the...

  13. Learning and teaching ecosystem behaviour in secondary education : Systems thinking and modelling in authentic practices

    NARCIS (Netherlands)

    Westra, R.H.V.

    2008-01-01

    This thesis describes developmental research, aiming at a useful approach for modern secondary ecology education. The research question is: What are the characteristics of a valid, feasible and effective learning and teaching strategy about ecosystem behaviour using modelling and systems thinking in

  14. Analyzing the ecosystem carbon dynamics of four European coniferous forests using a biogeochemistry model

    NARCIS (Netherlands)

    Churkina, G.; Tenhunen, J.; Thornton, P.; Falge, E.; Elbers, J.A.; Erhard, M.; Grünwald, T.; Kowalski, A.; Rannik, Ü.; Sprinz, D.

    2003-01-01

    This paper provides the first steps toward a regional-scale analysis of carbon (C) budgets. We explore the ability of the ecosystem model BIOME-BGC to estimate the daily and annual C dynamics of four European coniferous forests and shifts in these dynamics in response to changing environmental

  15. Modelling of spatially complex human-ecosystem, rural-urban and rich-poor interactions

    CSIR Research Space (South Africa)

    Naude, AH

    2008-06-01

    Full Text Available The paper outlines the challenges of modelling and assessing spatially complex human-ecosystem interactions, and the need to simultaneously consider rural-urban and rich-poor interactions. The context for exploring these challenges is South Africa...

  16. Pervasive drought legacies in forest ecosystems and their implications for carbon cycle models

    Science.gov (United States)

    W. R. L. Anderegg; C. Schwalm; F. Biondi; J. J. Camarero; G. Koch; M. Litvak; K. Ogle; J. D. Shaw; E. Shevliakova; A. P. Williams; A. Wolf; E. Ziaco; S. Pacala

    2015-01-01

    The impacts of climate extremes on terrestrial ecosystems are poorly understood but important for predicting carbon cycle feedbacks to climate change. Coupled climate-carbon cycle models typically assume that vegetation recovery from extreme drought is immediate and complete, which conflicts with the understanding of basic plant physiology. We examined the recovery of...

  17. Sensitivity analysis of a simple linear model of a savanna ecosystem at Nyslvley

    CSIR Research Space (South Africa)

    Getz, WA

    1975-12-01

    Full Text Available parameters is analysed. The results obtained from this analysis are discussed and some general statements on important structures in the Nylsvley ecosystem that emerge from the analysis of the model are made. In particular certain conclusions are drawn...

  18. On a computational method for modelling complex ecosystems by superposition procedure

    International Nuclear Information System (INIS)

    He Shanyu.

    1986-12-01

    In this paper, the Superposition Procedure is concisely described, and a computational method for modelling a complex ecosystem is proposed. With this method, the information contained in acceptable submodels and observed data can be utilized to maximal degree. (author). 1 ref

  19. Modeling forest ecosystem changes resulting from surface coal mining in West Virginia

    Science.gov (United States)

    John Brown; Andrew J. Lister; Mary Ann Fajvan; Bonnie Ruefenacht; Christine Mazzarella

    2012-01-01

    The objective of this project is to assess the effects of surface coal mining on forest ecosystem disturbance and restoration in the Coal River Subbasin in southern West Virginia. Our approach is to develop disturbance impact models for this subbasin that will serve as a case study for testing the feasibility of integrating currently available GIS data layers, remote...

  20. Development of Laboratory Model Ecosystems as Early Warning Elements of Environmental Pollution

    Science.gov (United States)

    1974-12-01

    AD-AOll 851 DEVELOPMENT OF LABORATORY MODEL ECOSYSTEMS AS EARLY WARNING ELEMENTS OF ENVIRONMENTAL POLLUTION Robert L. Metcalf... ENVIRONMENTAL POLLUTION Robert L. Metcalf, Ph. D. University of Illinois Urbana-Champaign, Illinois INTRODUCTION Problems of environmental pollution with...house dust is unsafe to breathe (Ewing and Pearson, 1974). Most of the source of our concern about environmental pollution by trace substances relates

  1. Optimising the management of complex dynamic ecosystems. An ecological-economic modelling approach

    NARCIS (Netherlands)

    Hein, L.G.

    2005-01-01

    Keywords: ecological-economic modelling; ecosystem services; resource use; efficient; sustainability; wetlands, rangelands.

  2. Using ecosystem modelling techniques in exposure assessments of radionuclides - an overview

    International Nuclear Information System (INIS)

    Kumblad, L.

    2005-01-01

    The risk to humans from potential releases from nuclear facilities is evaluated in safety assessments. Essential components of these assessments are exposure models, which estimate the transport of radionuclides in the environment, the uptake in biota, and transfer to humans. Recently, there has been a growing concern for radiological protection of the whole environment, not only humans, and a first attempt has been to employ model approaches based on stylized environments and transfer functions to biota based exclusively on bioconcentration factors (BCF). They are generally of a non-mechanistic nature and involve no knowledge of the actual processes involved, which is a severe limitation when assessing real ecosystems. in this paper, the possibility of using an ecological modelling approach as a complement or an alternative to the use of BCF-based models is discussed. The paper gives an overview of ecological and ecosystem modelling and examples of studies where ecosystem models have been used in association to ecological risk assessment studies for other pollutants than radionuclides. It also discusses the potential to use this technique in exposure assessments of radionuclides with a few examples from the safety assessment work performed by the Swedish nuclear fuel and waste management company (SKB). Finally there is a comparison of the characteristics of ecosystem models and traditionally exposure models for radionuclides used to estimate the radionuclide exposure of biota. The evaluation of ecosystem models already applied in safety assessments has shown that the ecosystem approach is possible to use to assess exposure to biota, and that it can handle many of the modelling problems identified related to BCF-models. The findings in this paper suggest that both national and international assessment frameworks for protection of the environment from ionising radiation would benefit from striving to adopt methodologies based on ecologically sound principles and

  3. Designing a Model of a Digital Ecosystem for Healthcare and Wellness Using the Business Model Canvas.

    Science.gov (United States)

    León, María Cosio; Nieto-Hipólito, Juan Ivan; Garibaldi-Beltrán, Julián; Amaya-Parra, Guillermo; Luque-Morales, Priscy; Magaña-Espinoza, Pedro; Aguilar-Velazco, José

    2016-06-01

    Wellness is a term often used to talk about optimal health as "dynamic balance of physical, emotional, social, spiritual, and intellectual health." While healthcare is a term about care offered to patients for improving their health. We use both terms, as well as the Business Model Canvas (BMC) methodology, to design a digital ecosystem model for healthcare and wellness called DE4HW; the model considers economic, technological, and legal asymmetries, which are present on e-services beyond geographical regions. BMC methodology was embedded into the global project strategy called: IBOT (Initiate, Build, Operate and Transfer); it is a methodology to establish a functional, integrated national telemedicine network and virtual education network; of which we took its phases rationale. The results in this work illustrate the design of DE4HW model, into the first phase of IBOT, enriched with the BMC, which enables us to define actors, their interactions, rules and protocols, in order to build DE4HW, while IBOT strategy manages the project goal, up to the transfer phase, where an integral service platform of healthcare and wellness is turned over to stakeholders.

  4. AN ECOSYSTEM MODEL OF FISHERIES AND NUTRIENT ENRICHMENT

    DEFF Research Database (Denmark)

    Nguyen, Thanh Viet; Vestergaard, Niels

    2009-01-01

      Economic models of fishery largely ignore the linkages to lower trophic levels. In particular, environmental data and other bottom-up information is widely disregarded. Nor are changes in physical environment (bottom-up) alongside both exogenous and endogenous environmental effects included in ...

  5. Modelling atmospheric OH-reactivity in a boreal forest ecosystem

    DEFF Research Database (Denmark)

    Mogensen, D.; Smolander, S.; Sogachev, Andrey

    2011-01-01

    We have modelled the total atmospheric OH-reactivity in a boreal forest and investigated the individual contributions from gas phase inorganic species, isoprene, monoterpenes, and methane along with other important VOCs. Daily and seasonal variation in OH-reactivity for the year 2008 was examined...

  6. Ecosystem models are by definition simplifications of the real ...

    African Journals Online (AJOL)

    spamer

    to calculate changes in total phytoplankton vegetative biomass with time ... into account when modelling phytoplankton population dynamics. ... Then, the means whereby the magnitude of ..... There was increased heat input and slight stratification from mid to ... conditions must be optimal and the water should be extremely ...

  7. Enhanced science-stakeholder communication to improve ecosystem model performances for climate change impact assessments.

    Science.gov (United States)

    Jönsson, Anna Maria; Anderbrant, Olle; Holmér, Jennie; Johansson, Jacob; Schurgers, Guy; Svensson, Glenn P; Smith, Henrik G

    2015-04-01

    In recent years, climate impact assessments of relevance to the agricultural and forestry sectors have received considerable attention. Current ecosystem models commonly capture the effect of a warmer climate on biomass production, but they rarely sufficiently capture potential losses caused by pests, pathogens and extreme weather events. In addition, alternative management regimes may not be integrated in the models. A way to improve the quality of climate impact assessments is to increase the science-stakeholder collaboration, and in a two-way dialog link empirical experience and impact modelling with policy and strategies for sustainable management. In this paper we give a brief overview of different ecosystem modelling methods, discuss how to include ecological and management aspects, and highlight the importance of science-stakeholder communication. By this, we hope to stimulate a discussion among the science-stakeholder communities on how to quantify the potential for climate change adaptation by improving the realism in the models.

  8. Climate, ecosystems, and planetary futures: The challenge to predict life in Earth system models.

    Science.gov (United States)

    Bonan, Gordon B; Doney, Scott C

    2018-02-02

    Many global change stresses on terrestrial and marine ecosystems affect not only ecosystem services that are essential to humankind, but also the trajectory of future climate by altering energy and mass exchanges with the atmosphere. Earth system models, which simulate terrestrial and marine ecosystems and biogeochemical cycles, offer a common framework for ecological research related to climate processes; analyses of vulnerability, impacts, and adaptation; and climate change mitigation. They provide an opportunity to move beyond physical descriptors of atmospheric and oceanic states to societally relevant quantities such as wildfire risk, habitat loss, water availability, and crop, fishery, and timber yields. To achieve this, the science of climate prediction must be extended to a more multifaceted Earth system prediction that includes the biosphere and its resources. Copyright © 2018, American Association for the Advancement of Science.

  9. Modeling the response of plants and ecosystems to elevated CO sub 2 and climate change

    Energy Technology Data Exchange (ETDEWEB)

    Reynolds, J.F.; Hilbert, D.W.; Chen, Jia-lin; Harley, P.C.; Kemp, P.R.; Leadley, P.W.

    1992-03-01

    While the exact effects of elevated CO{sub 2} on global climate are unknown, there is a growing consensus among climate modelers that global temperature and precipitation will increase, but that these changes will be non-uniform over the Earth's surface. In addition to these potential climatic changes, CO{sub 2} also directly affects plants via photosynthesis, respiration, and stomatal closure. Global climate change, in concert with these direct effects of CO{sub 2} on plants, could have a significant impact on both natural and agricultural ecosystems. Society's ability to prepare for, and respond to, such changes depends largely on the ability of climate and ecosystem researchers to provide predictions of regional level ecosystem responses with sufficient confidence and adequate lead time.

  10. Modeling the response of plants and ecosystems to elevated CO{sub 2} and climate change

    Energy Technology Data Exchange (ETDEWEB)

    Reynolds, J.F.; Hilbert, D.W.; Chen, Jia-lin; Harley, P.C.; Kemp, P.R.; Leadley, P.W.

    1992-03-01

    While the exact effects of elevated CO{sub 2} on global climate are unknown, there is a growing consensus among climate modelers that global temperature and precipitation will increase, but that these changes will be non-uniform over the Earth`s surface. In addition to these potential climatic changes, CO{sub 2} also directly affects plants via photosynthesis, respiration, and stomatal closure. Global climate change, in concert with these direct effects of CO{sub 2} on plants, could have a significant impact on both natural and agricultural ecosystems. Society`s ability to prepare for, and respond to, such changes depends largely on the ability of climate and ecosystem researchers to provide predictions of regional level ecosystem responses with sufficient confidence and adequate lead time.

  11. The behaviour of radiocaesium in woodland ecosystems. Measurement and modelling

    International Nuclear Information System (INIS)

    Toal, M.

    1999-02-01

    In order to better quantify risk to non-human biota from environmental radioactivity, our understanding of the behaviour of radionuclides in the biosphere needs to be increased. Hence the aims of the present study were threefold: 1) Review Ecological Risk Assessment (ERA) methodologies, 2) Quantify radiocaesium distribution in woodland biota in the vicinity of BNFL Sellafield, 3) Use this information to develop radiocaesium food-chain and dosimetry models for terrestrial invertebrates and small-mammals. A review of ERA literature concluded that of the two main methodologies available (individual receptor and holistic ERA), individual receptor based analysis is the most credible method given in today's level of scientific understanding. lt was also concluded that the use of modelling techniques in ERA will increase in future years. Two study sites were sampled, a Picea sitchensis monoculture (Lady Wood) and a mixed deciduous site (Longrigg Wood). Mean levels of Cs-137 (all activities quoted in Bq/kg dry weight) in soils:leaf litter were 473:408 (Lady Wood) and 142:32 (Longrigg Wood). The activity of understorey vegetation varied with ranges of 17-508 and 4-48 Bq/kg in Lady Wood and Longrigg, respectively. No vegetation species had concentration ratios (CRs) > 1. The greatest range in Cs-137 activity (2-5242 Bq/kg DW, Lady Wood) was found in fungi, with Mycena galariculata and Hypholoma fasciculare attaining the highest biomagnifications (CRs = 2.6, 2.0 respectively). Due to radioanalytical constraints, only 'mixed invertebrate' samples were measured for Longrigg Wood (yearly average = 8.5 Bq/kg). No significant invertebrate body-burden differences were found between taxa or between seasons for each invertebrate group in Lady Wood. Mean yearly Cs-137 body-burdens (Bq/kg DW) were 94 (Diplopoda), 104 (Isopoda), 54 (Chilopoda), 120 (Araneae), 91 (Opilionidae) and 41 (Carabidae). No invertebrates had CRs > 1. Seasonal Cs-137 body-burdens were also measured for the

  12. Modeling and Predicting Carbon and Water Fluxes Using Data-Driven Techniques in a Forest Ecosystem

    Directory of Open Access Journals (Sweden)

    Xianming Dou

    2017-12-01

    Full Text Available Accurate estimation of carbon and water fluxes of forest ecosystems is of particular importance for addressing the problems originating from global environmental change, and providing helpful information about carbon and water content for analyzing and diagnosing past and future climate change. The main focus of the current work was to investigate the feasibility of four comparatively new methods, including generalized regression neural network, group method of data handling (GMDH, extreme learning machine and adaptive neuro-fuzzy inference system (ANFIS, for elucidating the carbon and water fluxes in a forest ecosystem. A comparison was made between these models and two widely used data-driven models, artificial neural network (ANN and support vector machine (SVM. All the models were evaluated based on the following statistical indices: coefficient of determination, Nash-Sutcliffe efficiency, root mean square error and mean absolute error. Results indicated that the data-driven models are capable of accounting for most variance in each flux with the limited meteorological variables. The ANN model provided the best estimates for gross primary productivity (GPP and net ecosystem exchange (NEE, while the ANFIS model achieved the best for ecosystem respiration (R, indicating that no single model was consistently superior to others for the carbon flux prediction. In addition, the GMDH model consistently produced somewhat worse results for all the carbon flux and evapotranspiration (ET estimations. On the whole, among the carbon and water fluxes, all the models produced similar highly satisfactory accuracy for GPP, R and ET fluxes, and did a reasonable job of reproducing the eddy covariance NEE. Based on these findings, it was concluded that these advanced models are promising alternatives to ANN and SVM for estimating the terrestrial carbon and water fluxes.

  13. From Genes to Ecosystems in Microbiology: Modeling Approaches and the Importance of Individuality

    Directory of Open Access Journals (Sweden)

    Jan-Ulrich Kreft

    2017-11-01

    Full Text Available Models are important tools in microbial ecology. They can be used to advance understanding by helping to interpret observations and test hypotheses, and to predict the effects of ecosystem management actions or a different climate. Over the past decades, biological knowledge and ecosystem observations have advanced to the molecular and in particular gene level. However, microbial ecology models have changed less and a current challenge is to make them utilize the knowledge and observations at the genetic level. We review published models that explicitly consider genes and make predictions at the population or ecosystem level. The models can be grouped into three general approaches, i.e., metabolic flux, gene-centric and agent-based. We describe and contrast these approaches by applying them to a hypothetical ecosystem and discuss their strengths and weaknesses. An important distinguishing feature is how variation between individual cells (individuality is handled. In microbial ecosystems, individual heterogeneity is generated by a number of mechanisms including stochastic interactions of molecules (e.g., gene expression, stochastic and deterministic cell division asymmetry, small-scale environmental heterogeneity, and differential transport in a heterogeneous environment. This heterogeneity can then be amplified and transferred to other cell properties by several mechanisms, including nutrient uptake, metabolism and growth, cell cycle asynchronicity and the effects of age and damage. For example, stochastic gene expression may lead to heterogeneity in nutrient uptake enzyme levels, which in turn results in heterogeneity in intracellular nutrient levels. Individuality can have important ecological consequences, including division of labor, bet hedging, aging and sub-optimality. Understanding the importance of individuality and the mechanism(s underlying it for the specific microbial system and question investigated is essential for selecting the

  14. Modelling impacts of second generation bioenergy production on Ecosystem Services in Europe

    Science.gov (United States)

    Henner, D. N.; Smith, P.; Davies, C.; McNamara, N. P.

    2016-12-01

    Bioenergy crops are an important source of renewable energy and likely to play a major role in transitioning to a lower CO2 energy system. There is, however, uncertainty about the impacts of the growth of bioenergy crops on broader sustainability encompassed by ecosystem services, further enhanced by ongoing climate change. The goal of this project is to develop a comprehensive model that covers ecosystem services at a continental scale including biodiversity and pollination, water and air security, erosion control and soil security, GHG emissions, soil C and cultural services like tourism value. The technical distribution potential and likely yield of second generation energy crops, such as Miscanthus, Short Rotation Coppice (SRC; willow and poplar) was modelled using ECOSSE, DayCent, SalixFor and MiscanFor models. In addition, methods like water footprint tools, tourism value maps and ecosystem valuation tools and models are utilised. We will present results for synergies and trade-offs between land use change and ecosystem services, impact on food security and land management. Further, we will show modelled yield maps for different cultivars of Miscanthus, willow and poplar in Europe and constraint/opportunity maps based on projected yield and other factors e.g. total economic value, technical potential, current land use, climate change and trade-offs and synergies. It will be essential to include multiple ecosystem services when assessing the potential for bioenergy production/expansion that does not impact other land uses or provisioning services. Considering that the soil GHG balance is dominated by change in soil organic carbon (SOC) and the difference among Miscanthus and SRC is largely determined by yield, an important target for management of perennial energy crops is to achieve the best possible yield using the most appropriate energy crop and cultivar for the local situation. This research could inform future policy decisions on bioenergy crops in

  15. Linking biophysical models and public preferences for ecosystem service assessments: a case study for the Southern Rocky Mountains

    Science.gov (United States)

    Bagstad, Kenneth J.; Reed, James; Semmens, Darius J.; Sherrouse, Ben C.; Troy, Austin

    2016-01-01

    Through extensive research, ecosystem services have been mapped using both survey-based and biophysical approaches, but comparative mapping of public values and those quantified using models has been lacking. In this paper, we mapped hot and cold spots for perceived and modeled ecosystem services by synthesizing results from a social-values mapping study of residents living near the Pike–San Isabel National Forest (PSI), located in the Southern Rocky Mountains, with corresponding biophysically modeled ecosystem services. Social-value maps for the PSI were developed using the Social Values for Ecosystem Services tool, providing statistically modeled continuous value surfaces for 12 value types, including aesthetic, biodiversity, and life-sustaining values. Biophysically modeled maps of carbon sequestration and storage, scenic viewsheds, sediment regulation, and water yield were generated using the Artificial Intelligence for Ecosystem Services tool. Hotspots for both perceived and modeled services were disproportionately located within the PSI’s wilderness areas. Additionally, we used regression analysis to evaluate spatial relationships between perceived biodiversity and cultural ecosystem services and corresponding biophysical model outputs. Our goal was to determine whether publicly valued locations for aesthetic, biodiversity, and life-sustaining values relate meaningfully to results from corresponding biophysical ecosystem service models. We found weak relationships between perceived and biophysically modeled services, indicating that public perception of ecosystem service provisioning regions is limited. We believe that biophysical and social approaches to ecosystem service mapping can serve as methodological complements that can advance ecosystem services-based resource management, benefitting resource managers by showing potential locations of synergy or conflict between areas supplying ecosystem services and those valued by the public.

  16. Models for transport and fate of carbon, nutrients and radionuclides in the aquatic ecosystem at Oeregrundsgrepen

    Energy Technology Data Exchange (ETDEWEB)

    Erichsen, Anders Christian; Moehlenberg, Flemming; Closter, Rikke Margrethe; Sandberg, Johannes (DHI, Hoersholm (Denmark))

    2010-06-15

    The aim of the work was to provide supplementary input to the risk assessment of a planned final nuclear waste repository at Forsmark. The main deliverable was a computed water exchange between basins in the Forsmark marine area for the period 6500 BC to 9000 AD - based on the hydrodynamic modelling - to be used as input to the landscape dose model. In addition and what is described in this report, a second deliverable was development and application of high-resolution models for the marine ecosystem and radionuclide processes. The purpose of this deliverable was to illustrate the spatial and temporal variation in important processes and parameters, while constituting a complement to previous modelling approaches and providing supporting information to discussions of the marine ecosystem, parameters and variation (see Chapter 4 and 6).To this end, a hydrodynamic model of high temporal and spatial resolution was constructed and calibrated for the Forsmark area. An ecosystem model was then developed and coupled to the hydrodynamic model. In turn, a detailed radionuclide model was coupled to the ecosystem model to provide detailed predictions of radionuclide transport and accumulation in the coastal ecosystem. The ecosystem and radionuclide models were developed in the equation solver MIKE ECOLab that links seamless to the MIKE3 FM hydrodynamic model. The 'standard' ECOLab ecosystem model was extended with six biological state variables, perennial macroalgae, benthic herbivors, detritus feeders, planktivorus fish and, benthic predators representing the relict isopod Saduria and cod. In contrast to the ecosystem model, the radionuclide model was developed from scratch but building on the structure of the ecosystem model and using the output (process rates linking state variables) from the ecosystem model as input to the radionuclide model. Both the ecosystem model and the radionuclide model were run for several years (5-8 years) to bring state variables into

  17. Conducting model ecosystem studies in tropical climate zones: Lessons learned from Thailand and way forward

    Energy Technology Data Exchange (ETDEWEB)

    Daam, Michiel A., E-mail: mdaam@isa.utl.pt [Instituto Superior de Agronomia, Technical University of Lisbon, Tapada da Ajuda, 1349-017 Lisbon (Portugal); Van den Brink, Paul J., E-mail: Paul.vandenbrink@wur.nl [Alterra, Wageningen University and Research centre, P.O. Box 47, 6700 AA Wageningen (Netherlands); Wageningen University, Department of Aquatic Ecology and Water Quality Management, Wageningen University and Research centre, P.O. Box 47, 6700 AA Wageningen (Netherlands)

    2011-04-15

    Little research has been done so far into the environmental fate and side effects of pesticides in the tropics. In addition, those studies conducted in tropical regions have focused almost exclusively on single species laboratory tests. Hence, fate and effects of pesticides on higher-tier levels have barely been studied under tropical conditions. To address this lack of knowledge, four outdoor aquatic model ecosystem experiments using two different test systems were conducted in Thailand evaluating the insecticide chlorpyrifos, the herbicide linuron and the fungicide carbendazim. Results of these experiments and comparisons of recorded fate and effects with temperate studies have been published previously. The present paper discusses the pros and cons of the methodologies applied and provides indications for i) possible improvements; ii) important aspects that should be considered when performing model ecosystem experiments in the tropics; iii) future research. - Research highlights: > Methodologies used overall seemed adequate to evaluate pesticide stress. > Identification and sampling of tropical macroinvertebrates should be improved. > Additional studies needed for different compounds and greater geographical scale. > Different exposure regimes and ecosystem types should be simulated. > Trophic interrelationship and recovery potential need to be evaluated. - Methodologies for conducting model ecosystem studies in the tropics.

  18. Development of an integrated generic model for multi-scale assessment of the impacts of agro-ecosystems on major ecosystem services in West Africa.

    Science.gov (United States)

    Belem, Mahamadou; Saqalli, Mehdi

    2017-11-01

    This paper presents an integrated model assessing the impacts of climate change, agro-ecosystem and demographic transition patterns on major ecosystem services in West-Africa along a partial overview of economic aspects (poverty reduction, food self-sufficiency and income generation). The model is based on an agent-based model associated with a soil model and multi-scale spatial model. The resulting Model for West-Africa Agro-Ecosystem Integrated Assessment (MOWASIA) is ecologically generic, meaning it is designed for all sudano-sahelian environments but may then be used as an experimentation facility for testing different scenarios combining ecological and socioeconomic dimensions. A case study in Burkina Faso is examined to assess the environmental and economic performances of semi-continuous and continuous farming systems. Results show that the semi-continuous system using organic fertilizer and fallowing practices contribute better to environment preservation and food security than the more economically performant continuous system. In addition, this study showed that farmers heterogeneity could play an important role in agricultural policies planning and assessment. In addition, the results showed that MOWASIA is an effective tool for designing, analysing the impacts of agro-ecosystems. Copyright © 2017. Published by Elsevier Ltd.

  19. A methodology for evaluation of parent-mutant competition using a generalized non-linear ecosystem model

    Science.gov (United States)

    Raymond L. Czaplewski

    1973-01-01

    A generalized, non-linear population dynamics model of an ecosystem is used to investigate the direction of selective pressures upon a mutant by studying the competition between parent and mutant populations. The model has the advantages of considering selection as operating on the phenotype, of retaining the interaction of the mutant population with the ecosystem as a...

  20. Analysis of trait-based models in marine ecosystems

    DEFF Research Database (Denmark)

    Heilmann, Irene Louise Torpe

    -temporal pattern formation in a predator–prey system where animals move towards higher fitness. Reaction-diffusion systems have been used extensively to describe spatio-temporal patterns in a variety of systems. However, animals rarely move completely at random, as expressed by diffusion. This has lead to models...... with taxis terms, describing individuals moving in the direction of an attractant. An example is chemotaxis models, where bacteria are attracted to a chemical substance. From an evolutionary perspective, it is expected that animals act as to optimize their fitness. Based on this principle, a predator......–prey system with fitness taxis and diffusion is proposed. Here, fitness taxis refer to animals moving towards higher values of fitness, and the specific growth rates of the populations are used as a measure of the fitness values. To determine the conditions for pattern formation, a linear stability analysis...

  1. Climate change impacts utilizing regional models for agriculture, hydrology and natural ecosystems

    Science.gov (United States)

    Kafatos, M.; Asrar, G. R.; El-Askary, H. M.; Hatzopoulos, N.; Kim, J.; Kim, S.; Medvigy, D.; Prasad, A. K.; Smith, E.; Stack, D. H.; Tremback, C.; Walko, R. L.

    2012-12-01

    Climate change impacts the entire Earth but with crucial and often catastrophic impacts at local and regional levels. Extreme phenomena such as fires, dust storms, droughts and other natural hazards present immediate risks and challenges. Such phenomena will become more extreme as climate change and anthropogenic activities accelerate in the future. We describe a major project funded by NIFA (Grant # 2011-67004-30224), under the joint NSF-DOE-USDA Earth System Models (EaSM) program, to investigate the impacts of climate variability and change on the agricultural and natural (i.e. rangeland) ecosystems in the Southwest USA using a combination of historical and present observations together with climate, and ecosystem models, both in hind-cast and forecast modes. The applicability of the methodology to other regions is relevant (for similar geographic regions as well as other parts of the world with different agriculture and ecosystems) and should advance the state of knowledge for regional impacts of climate change. A combination of multi-model global climate projections from the decadal predictability simulations, to downscale dynamically these projections using three regional climate models, combined with remote sensing MODIS and other data, in order to obtain high-resolution climate data that can be used with hydrological and ecosystem models for impacts analysis, is described in this presentation. Such analysis is needed to assess the future risks and potential impacts of projected changes on these natural and managed ecosystems. The results from our analysis can be used by scientists to assist extended communities to determine agricultural coping strategies, and is, therefore, of interest to wide communities of stakeholders. In future work we will be including surface hydrologic modeling and water resources, extend modeling to higher resolutions and include significantly more crops and geographical regions with different weather and climate conditions

  2. Diagnosis and Quantification of Climatic Sensitivity of Carbon Fluxes in Ensemble Global Ecosystem Models

    Science.gov (United States)

    Wang, W.; Hashimoto, H.; Milesi, C.; Nemani, R. R.; Myneni, R.

    2011-12-01

    Terrestrial ecosystem models are primary scientific tools to extrapolate our understanding of ecosystem functioning from point observations to global scales as well as from the past climatic conditions into the future. However, no model is nearly perfect and there are often considerable structural uncertainties existing between different models. Ensemble model experiments thus become a mainstream approach in evaluating the current status of global carbon cycle and predicting its future changes. A key task in such applications is to quantify the sensitivity of the simulated carbon fluxes to climate variations and changes. Here we develop a systematic framework to address this question solely by analyzing the inputs and the outputs from the models. The principle of our approach is to assume the long-term (~30 years) average of the inputs/outputs as a quasi-equlibrium of the climate-vegetation system while treat the anomalies of carbon fluxes as responses to climatic disturbances. In this way, the corresponding relationships can be largely linearized and analyzed using conventional time-series techniques. This method is used to characterize three major aspects of the vegetation models that are mostly important to global carbon cycle, namely the primary production, the biomass dynamics, and the ecosystem respiration. We apply this analytical framework to quantify the climatic sensitivity of an ensemble of models including CASA, Biome-BGC, LPJ as well as several other DGVMs from previous studies, all driven by the CRU-NCEP climate dataset. The detailed analysis results are reported in this study.

  3. Modelling of 137Cs behaviour in forest ecosystems and prediction of its accumulation in forest products

    International Nuclear Information System (INIS)

    Spiridonov, S.I.; Fesenko, S.V.; Gontarenko, I.A.; Avila, R.

    2001-01-01

    A mathematical model of 137 Cs migration in forest ecosystem contaminated due to the Chernobyl accident presented, which describes the behaviour of this radionuclide in the forest litter-soil system, tress, and forest animals. The model's parameters for different types of forest ecosystems are estimated and model's adequacy is tested through the use of independent experimental data. The sensitivity of the model's output variables is analyzed to variations in the most significant parameters. The differences in the seasonal and mean annual dynamics of 137 Cs concentration in muscles of roe deers and mooses are shown to be defined by specific features of the diets of these animals and variations in 137 Cs content in the main diet components [ru

  4. Integrated modelling for assessing the risk of groundwater contaminants to human health and surface water ecosystems

    DEFF Research Database (Denmark)

    McKnight, Ursula S.; Rasmussen, Jes; Funder, Simon G.

    2010-01-01

    for evaluating the impact of a TCE groundwater plume, located in an area with protected drinking water interests, to human health and surface water ecosystems. This is accomplished by coupling the system dynamicsbased decision support system CARO-Plus to the aquatic ecosystem model AQUATOX via an analytical......The practical implementation of the European Water Framework Directive has resulted in an increased focus on the groundwater-surface water interaction zone. A gap exists with respect to preliminary assessment methodologies that are capable of evaluating and prioritising point sources...... volatilisation model for the stream. The model is tested on a Danish case study involving a 750 m long TCE groundwater plume discharging into a stream. The initial modelling results indicate that TCE contaminant plumes with μgL-1 concentrations entering surface water systems do not pose a significant risk...

  5. Challenges and opportunities in land surface modelling of savanna ecosystems

    Directory of Open Access Journals (Sweden)

    R. Whitley

    2017-10-01

    Full Text Available The savanna complex is a highly diverse global biome that occurs within the seasonally dry tropical to sub-tropical equatorial latitudes and are structurally and functionally distinct from grasslands and forests. Savannas are open-canopy environments that encompass a broad demographic continuum, often characterised by a changing dominance between C3-tree and C4-grass vegetation, where frequent environmental disturbances such as fire modulates the balance between ephemeral and perennial life forms. Climate change is projected to result in significant changes to the savanna floristic structure, with increases to woody biomass expected through CO2 fertilisation in mesic savannas and increased tree mortality expected through increased rainfall interannual variability in xeric savannas. The complex interaction between vegetation and climate that occurs in savannas has traditionally challenged terrestrial biosphere models (TBMs, which aim to simulate the interaction between the atmosphere and the land surface to predict responses of vegetation to changing in environmental forcing. In this review, we examine whether TBMs are able to adequately represent savanna fluxes and what implications potential deficiencies may have for climate change projection scenarios that rely on these models. We start by highlighting the defining characteristic traits and behaviours of savannas, how these differ across continents and how this information is (or is not represented in the structural framework of many TBMs. We highlight three dynamic processes that we believe directly affect the water use and productivity of the savanna system: phenology, root-water access and fire dynamics. Following this, we discuss how these processes are represented in many current-generation TBMs and whether they are suitable for simulating savanna fluxes.Finally, we give an overview of how eddy-covariance observations in combination with other data sources can be used in model

  6. Models for transport and fate of carbon, nutrients and point source released radionuclides to an aquatic ecosystem

    Energy Technology Data Exchange (ETDEWEB)

    Kumblad, Linda [Stockholm Univ. (Sweden). Dept. of Systems Ecology; Kautsky, Ulrik [Swedish Nuclear Fuel and Waste Management Co., Stockholm (Sweden)

    2004-09-01

    In this report three ecosystem models are described in terms of structure, initial data, and results. All models are dynamic, mass-balanced and describe the transport and fate of elements in an open aquatic ecosystem. The models are based on ecologically sound principles, provide model results with high resolution and transparency, and are constrained by the nutrient dynamics of the ecosystem itself. The processes driving the transport in all the models are both the biological processes such as primary production, consumption, respiration and excretion, and abiotic e.g. water exchange and air-sea exchange. The first model, the CNP-model, describes the distribution and fluxes of carbon and nutrients for the coastal ecosystem off Forsmark. The second model, the C-14 model, is an extension of the CNP-model and describes the transport and distribution of hypothetically released C-14 from the underground repository SFR-1 to the ecosystem above. The third model, the RN-model, is a generic radionuclide flow model that models the transport and distribution of radionuclides other than C-14 hypothetically discharged to the ecosystem. The model also analyses the importance of some radionuclide specific mechanisms for the radionuclide flow. The generic radionuclide model is also based on the CNP-model, but has radionuclide specific mechanisms connected to each compartment.

  7. Models for transport and fate of carbon, nutrients and point source released radionuclides to an aquatic ecosystem

    International Nuclear Information System (INIS)

    Kumblad, Linda

    2004-09-01

    In this report three ecosystem models are described in terms of structure, initial data, and results. All models are dynamic, mass-balanced and describe the transport and fate of elements in an open aquatic ecosystem. The models are based on ecologically sound principles, provide model results with high resolution and transparency, and are constrained by the nutrient dynamics of the ecosystem itself. The processes driving the transport in all the models are both the biological processes such as primary production, consumption, respiration and excretion, and abiotic e.g. water exchange and air-sea exchange. The first model, the CNP-model, describes the distribution and fluxes of carbon and nutrients for the coastal ecosystem off Forsmark. The second model, the C-14 model, is an extension of the CNP-model and describes the transport and distribution of hypothetically released C-14 from the underground repository SFR-1 to the ecosystem above. The third model, the RN-model, is a generic radionuclide flow model that models the transport and distribution of radionuclides other than C-14 hypothetically discharged to the ecosystem. The model also analyses the importance of some radionuclide specific mechanisms for the radionuclide flow. The generic radionuclide model is also based on the CNP-model, but has radionuclide specific mechanisms connected to each compartment

  8. On the use of tower-flux measurements to assess the performance of global ecosystem models

    Science.gov (United States)

    El Maayar, M.; Kucharik, C.

    2003-04-01

    Global ecosystem models are important tools for the study of biospheric processes and their responses to environmental changes. Such models typically translate knowledge, gained from local observations, into estimates of regional or even global outcomes of ecosystem processes. A typical test of ecosystem models consists of comparing their output against tower-flux measurements of land surface-atmosphere exchange of heat and mass. To perform such tests, models are typically run using detailed information on soil properties (texture, carbon content,...) and vegetation structure observed at the experimental site (e.g., vegetation height, vegetation phenology, leaf photosynthetic characteristics,...). In global simulations, however, earth's vegetation is typically represented by a limited number of plant functional types (PFT; group of plant species that have similar physiological and ecological characteristics). For each PFT (e.g., temperate broadleaf trees, boreal conifer evergreen trees,...), which can cover a very large area, a set of typical physiological and physical parameters are assigned. Thus, a legitimate question arises: How does the performance of a global ecosystem model run using detailed site-specific parameters compare with the performance of a less detailed global version where generic parameters are attributed to a group of vegetation species forming a PFT? To answer this question, we used a multiyear dataset, measured at two forest sites with contrasting environments, to compare seasonal and interannual variability of surface-atmosphere exchange of water and carbon predicted by the Integrated BIosphere Simulator-Dynamic Global Vegetation Model. Two types of simulations were, thus, performed: a) Detailed runs: observed vegetation characteristics (leaf area index, vegetation height,...) and soil carbon content, in addition to climate and soil type, are specified for model run; and b) Generic runs: when only observed climates and soil types at the

  9. Implications of Uncertainty in Fossil Fuel Emissions for Terrestrial Ecosystem Modeling

    Science.gov (United States)

    King, A. W.; Ricciuto, D. M.; Mao, J.; Andres, R. J.

    2017-12-01

    Given observations of the increase in atmospheric CO2, estimates of anthropogenic emissions and models of oceanic CO2 uptake, one can estimate net global CO2 exchange between the atmosphere and terrestrial ecosystems as the residual of the balanced global carbon budget. Estimates from the Global Carbon Project 2016 show that terrestrial ecosystems are a growing sink for atmospheric CO2 (averaging 2.12 Gt C y-1 for the period 1959-2015 with a growth rate of 0.03 Gt C y-1 per year) but with considerable year-to-year variability (standard deviation of 1.07 Gt C y-1). Within the uncertainty of the observations, emissions estimates and ocean modeling, this residual calculation is a robust estimate of a global terrestrial sink for CO2. A task of terrestrial ecosystem science is to explain the trend and variability in this estimate. However, "within the uncertainty" is an important caveat. The uncertainty (2σ; 95% confidence interval) in fossil fuel emissions is 8.4% (±0.8 Gt C in 2015). Combined with uncertainty in other carbon budget components, the 2σ uncertainty surrounding the global net terrestrial ecosystem CO2 exchange is ±1.6 Gt C y-1. Ignoring the uncertainty, the estimate of a general terrestrial sink includes 2 years (1987 and 1998) in which terrestrial ecosystems are a small source of CO2 to the atmosphere. However, with 2σ uncertainty, terrestrial ecosystems may have been a source in as many as 18 years. We examine how well global terrestrial biosphere models simulate the trend and interannual variability of the global-budget estimate of the terrestrial sink within the context of this uncertainty (e.g., which models fall outside the 2σ uncertainty and in what years). Models are generally capable of reproducing the trend in net terrestrial exchange, but are less able to capture interannual variability and often fall outside the 2σ uncertainty. The trend in the residual carbon budget estimate is primarily associated with the increase in atmospheric CO2

  10. The role of stoichiometric flexibility in modelling forest ecosystem responses to nitrogen fertilization.

    Science.gov (United States)

    Meyerholt, Johannes; Zaehle, Sönke

    2015-12-01

    The response of the forest carbon (C) balance to changes in nitrogen (N) deposition is uncertain, partly owing to diverging representations of N cycle processes in dynamic global vegetation models (DGVMs). Here, we examined how different assumptions about the degree of flexibility of the ecosystem's C : N ratios contribute to this uncertainty, and which of these assumptions best correspond to the available data. We applied these assumptions within the framework of a DGVM and compared the results to responses in net primary productivity (NPP), leaf N concentration, and ecosystem N partitioning, observed at 22 forest N fertilization experiments. Employing flexible ecosystem pool C : N ratios generally resulted in the most convincing model-data agreement with respect to production and foliar N responses. An intermediate degree of stoichiometric flexibility in vegetation, where wood C : N ratio changes were decoupled from leaf and root C : N ratio changes, led to consistent simulation of production and N cycle responses to N addition. Assuming fixed C : N ratios or scaling leaf N concentration changes to other tissues, commonly assumed by DGVMs, was not supported by reported data. Between the tested assumptions, the simulated changes in ecosystem C storage relative to changes in C assimilation varied by up to 20%. © 2015 The Authors. New Phytologist © 2015 New Phytologist Trust.

  11. Nutrient limitation leads to penetrative growth into agar and affects aroma formation in Pichia fabianii, P. kudriavzevii and Saccharomyces cerevisiae

    NARCIS (Netherlands)

    van Rijswijck, Irma M H; Dijksterhuis, Jan; Wolkers-Rooijackers, Judith C M; Abee, Tjakko; Smid, Eddy J

    Among fermentative yeast species, Saccharomyces cerevisiae is most frequently used as a model organism, although other yeast species may have special features that make them interesting candidates to apply in food-fermentation processes. In this study, we used three yeast species isolated from

  12. Nutrient limitation leads to penetrative growth into agar and affects aroma formation in Pichia fabianii, P. kudriavzevii and Saccharomyces cerevisiae

    NARCIS (Netherlands)

    Rijswijck, van I.M.H.; Dijksterhuis, J.; Wolkers-Rooijackers, J.C.M.; Abee, T.; Smid, E.J.

    2015-01-01

    Among fermentative yeast species, Saccharomyces cerevisiae is most frequently used as a model organism, although other yeast species may have special features that make them interesting candidates to apply in food-fermentation processes. In this study, we used three yeast species isolated from

  13. Modelling the soil carbon cycle of pine ecosystems

    International Nuclear Information System (INIS)

    Nakane, K.

    1994-01-01

    Soil carbon cycling rates and carbon budgets were calculated for stands of four pine species. Pinus sylvestris (at Jaedraaas, Sweden), P. densiflora (Hiroshima, Japan), P. elliottii (Florida, USA) and P. radiata (Canberra, Australia), using a simulation model driven by daily observations of mean air temperature and precipitation. Inputs to soil carbon through litterfall differ considerably among the four pine forests, but the accumulation of the A 0 layer and humus in mineral soil is less variable. Decomposition of the A 0 layer and humus is fastest for P. densiflora and slowest for P. sylvestris stands with P. radiata and P. elliottii intermediate. The decomposition rate is lower for the P. elliottii stand than for P. densiflora in spite of its higher temperatures and slightly higher precipitation. Seasonal changes in simulated soil carbon are observed only for the A 0 layer at the P. densiflora site. Simulated soil respiration rates vary seasonally in three stands (P. sylvestris, P. densiflora and P. radiata). In simulations for pine trees planted on bare soil, all soil organic matter fractions except the humus in mineral soil recover to half their asymptotic values within 30 to 40 years of planting for P. sylvestris and P. densiflora, compared with 10 to 20 years for P. radiata and P. elliottii. The simulated recovery of soil carbon following clear-cutting is fastest for the P. elliottii stand and slowest for P. sylvestris. Management of P. elliottii and P. radiata stands on 40-years rotations is sustainable because carbon removed through harvest is restored in the interval between successive clear-cuts. However p. densiflora and P. sylvestris stands may be unable to maintain soil carbon under such a short rotation. High growth rates of P. elliottii and p. radiata stands in spite of relatively poor soil conditions and slow carbon cycling may be related to the physiological responses of species to environmental conditions. (Abstract Truncated)

  14. Applying and Individual-Based Model to Simultaneously Evaluate Net Ecosystem Production and Tree Diameter Increment

    Science.gov (United States)

    Fang, F. J.

    2017-12-01

    Reconciling observations at fundamentally different scales is central in understanding the global carbon cycle. This study investigates a model-based melding of forest inventory data, remote-sensing data and micrometeorological-station data ("flux towers" estimating forest heat, CO2 and H2O fluxes). The individual tree-based model FORCCHN was used to evaluate the tree DBH increment and forest carbon fluxes. These are the first simultaneous simulations of the forest carbon budgets from flux towers and individual-tree growth estimates of forest carbon budgets using the continuous forest inventory data — under circumstances in which both predictions can be tested. Along with the global implications of such findings, this also improves the capacity for forest sustainable management and the comprehensive understanding of forest ecosystems. In forest ecology, diameter at breast height (DBH) of a tree significantly determines an individual tree's cross-sectional sapwood area, its biomass and carbon storage. Evaluation the annual DBH increment (ΔDBH) of an individual tree is central to understanding tree growth and forest ecology. Ecosystem Carbon flux is a consequence of key ecosystem processes in the forest-ecosystem carbon cycle, Gross and Net Primary Production (GPP and NPP, respectively) and Net Ecosystem Respiration (NEP). All of these closely relate with tree DBH changes and tree death. Despite advances in evaluating forest carbon fluxes with flux towers and forest inventories for individual tree ΔDBH, few current ecological models can simultaneously quantify and predict the tree ΔDBH and forest carbon flux.

  15. Preliminary analysis of the Jimo coastal ecosystem with the ecopath model

    Science.gov (United States)

    Su, Meng

    2016-12-01

    The Jimo coast encompasses an area of 2157 km2, and the ecosystem is valuable both socially and economically with regional fisheries substantially contributing to the value. A mass-balanced trophic model consisting of 15 functional ecological groups was developed for the coastal ecosystem using the Ecopath model in Ecopath with Ecosim (EwE) software (version 6.4.3). The results of the model simulations indicated that the trophic levels of the functional groups varied between 1.0 and 3.76, and the total production of the system was estimated to be 5112.733 t km-2 yr-1 with a total energy transfer efficiency of 17.6%. The proportion of the total flow originating from detritus was estimated to be 48%, whereas that from primary producers was 52%, indicating that the grazing food chain dominated the energy flow. The ratio of total primary productivity to total respiration in the system was 3.78, and the connectivity index was 0.4. The fin cycling index and the mean path length of the energy flow were 4.92% and 2.57%, respectively, which indicated that the ecosystem exhibits relatively low maturity and stability. The mixed trophic impact (MTI) procedure suggested that the ecological groups at lower trophic levels dominated the feeding dynamics in the Jimo coastal ecosystem. Overfishing is thought to be the primary reason for the degeneration of the Jimo coastal ecosystem, resulting in a decline in the abundance of pelagic and demersal fish species and a subsequent shift to the predominance of lower-trophic-level functional groups. Finally, we offered some recommendations for improving current fishery management practices.

  16. A Technology-Neutral Role-Based Collaboration Model for Software Ecosystems

    DEFF Research Database (Denmark)

    Stanciulescu, Stefan; Rabiser, Daniela; Seidl, Christoph

    2016-01-01

    by contributing a role-based collaboration model for software ecosystems to make such implicit similarities explicit and to raise awareness among developers during their ongoing efforts. We extract this model based on realization artifacts in a specific programming language located in a particular source code......In large-scale software ecosystems, many developers contribute extensions to a common software platform. Due to the independent development efforts and the lack of a central steering mechanism, similar functionality may be developed multiple times by different developers. We tackle this problem...... efforts and information of ongoing development efforts. Finally, using the collaborations defined in the formalism we model real artifacts from Marlin, a firmware for 3D printers, and we show that for the selected scenarios, the five collaborations were sufficient to raise awareness and make implicit...

  17. Emergence of a complex and stable network in a model ecosystem with extinction and mutation.

    Science.gov (United States)

    Tokita, Kei; Yasutomi, Ayumu

    2003-03-01

    We propose a minimal model of the dynamics of diversity-replicator equations with extinction, invasion and mutation. We numerically study the behavior of this simple model and show that it displays completely different behavior from the conventional replicator equation and the generalized Lotka-Volterra equation. We reach several significant conclusions as follows: (1) a complex ecosystem can emerge when mutants with respect to species-specific interaction are introduced; (2) such an ecosystem possesses strong resistance to invasion; (3) a typical fixation process of mutants is realized through the rapid growth of a group of mutualistic mutants with higher fitness than majority species; (4) a hierarchical taxonomic structure (like family-genus-species) emerges; and (5) the relative abundance of species exhibits a typical pattern widely observed in nature. Several implications of these results are discussed in connection with the relationship of the present model to the generalized Lotka-Volterra equation.

  18. Modeling and validating tritium transfer in a grassland ecosystem in response to {sup 3}H releases

    Energy Technology Data Exchange (ETDEWEB)

    Le Dizes, S. [Institute for Radioprotection and Nuclear Safety, IRSN/PRP-ENV/SERIS/LM2E, Centre de Cadarache, Saint-Paul-lez-Durance (France); Maro, D.; Rozet, M.; Hebert, D. [IRSN/PRP-ENV/SERIS/LRC, Cherbourg-Octeville (France)

    2015-03-15

    In this paper a radioecological model (TOCATTA) for tritium transfer in a grassland ecosystem developed on an hourly time-step basis is proposed and compared with the first data set obtained in the vicinity of the AREVA-NC reprocessing plant of La Hague (France). The TOCATTA model aims at simulating dynamics of tritium transfer in agricultural soil and plant ecosystems exposed to time-varying HTO concentrations in air water vapour and possibly in irrigation and rain water. In the present study, gaseous releases of tritium from the AREVA NC nuclear reprocessing plant in normal operation can be intense and intermittent over a period of less than 24 hours. A first comparison of the model predictions with the field data has shown that TOCATTA should be improved in terms of kinetics of tritium transfer.

  19. Discussion of skill improvement in marine ecosystem dynamic models based on parameter optimization and skill assessment

    Science.gov (United States)

    Shen, Chengcheng; Shi, Honghua; Liu, Yongzhi; Li, Fen; Ding, Dewen

    2016-07-01

    Marine ecosystem dynamic models (MEDMs) are important tools for the simulation and prediction of marine ecosystems. This article summarizes the methods and strategies used for the improvement and assessment of MEDM skill, and it attempts to establish a technical framework to inspire further ideas concerning MEDM skill improvement. The skill of MEDMs can be improved by parameter optimization (PO), which is an important step in model calibration. An efficient approach to solve the problem of PO constrained by MEDMs is the global treatment of both sensitivity analysis and PO. Model validation is an essential step following PO, which validates the efficiency of model calibration by analyzing and estimating the goodness-of-fit of the optimized model. Additionally, by focusing on the degree of impact of various factors on model skill, model uncertainty analysis can supply model users with a quantitative assessment of model confidence. Research on MEDMs is ongoing; however, improvement in model skill still lacks global treatments and its assessment is not integrated. Thus, the predictive performance of MEDMs is not strong and model uncertainties lack quantitative descriptions, limiting their application. Therefore, a large number of case studies concerning model skill should be performed to promote the development of a scientific and normative technical framework for the improvement of MEDM skill.

  20. A model using marginal efficiency of investment to analyse carbon and nitrogen interactions in forested ecosystems

    Science.gov (United States)

    Thomas, R. Q.; Williams, M.

    2014-12-01

    Carbon (C) and nitrogen (N) cycles are coupled in terrestrial ecosystems through multiple processes including photosynthesis, tissue allocation, respiration, N fixation, N uptake, and decomposition of litter and soil organic matter. Capturing the constraint of N on terrestrial C uptake and storage has been a focus of the Earth System modelling community. Here we explore the trade-offs and sensitivities of allocating C and N to different tissues in order to optimize the productivity of plants using a new, simple model of ecosystem C-N cycling and interactions (ACONITE). ACONITE builds on theory related to plant economics in order to predict key ecosystem properties (leaf area index, leaf C:N, N fixation, and plant C use efficiency) based on the optimization of the marginal change in net C or N uptake associated with a change in allocation of C or N to plant tissues. We simulated and evaluated steady-state and transient ecosystem stocks and fluxes in three different forest ecosystems types (tropical evergreen, temperate deciduous, and temperate evergreen). Leaf C:N differed among the three ecosystem types (temperate deciduous database describing plant traits. Gross primary productivity (GPP) and net primary productivity (NPP) estimates compared well to observed fluxes at the simulation sites. A sensitivity analysis revealed that parameterization of the relationship between leaf N and leaf respiration had the largest influence on leaf area index and leaf C:N. Also, a widely used linear leaf N-respiration relationship did not yield a realistic leaf C:N, while a more recently reported non-linear relationship simulated leaf C:N that compared better to the global trait database than the linear relationship. Overall, our ability to constrain leaf area index and allow spatially and temporally variable leaf C:N can help address challenges simulating these properties in ecosystem and Earth System models. Furthermore, the simple approach with emergent properties based on

  1. Carbon fluxes in ecosystems of Yellowstone National Park predicted from remote sensing data and simulation modeling.

    Science.gov (United States)

    Potter, Christopher; Klooster, Steven; Crabtree, Robert; Huang, Shengli; Gross, Peggy; Genovese, Vanessa

    2011-08-11

    A simulation model based on remote sensing data for spatial vegetation properties has been used to estimate ecosystem carbon fluxes across Yellowstone National Park (YNP). The CASA (Carnegie Ames Stanford Approach) model was applied at a regional scale to estimate seasonal and annual carbon fluxes as net primary production (NPP) and soil respiration components. Predicted net ecosystem production (NEP) flux of CO2 is estimated from the model for carbon sinks and sources over multi-year periods that varied in climate and (wildfire) disturbance histories. Monthly Enhanced Vegetation Index (EVI) image coverages from the NASA Moderate Resolution Imaging Spectroradiometer (MODIS) instrument (from 2000 to 2006) were direct inputs to the model. New map products have been added to CASA from airborne remote sensing of coarse woody debris (CWD) in areas burned by wildfires over the past two decades. Model results indicated that relatively cooler and wetter summer growing seasons were the most favorable for annual plant production and net ecosystem carbon gains in representative landscapes of YNP. When summed across vegetation class areas, the predominance of evergreen forest and shrubland (sagebrush) cover was evident, with these two classes together accounting for 88% of the total annual NPP flux of 2.5 Tg C yr-1 (1 Tg = 1012 g) for the entire Yellowstone study area from 2000-2006. Most vegetation classes were estimated as net ecosystem sinks of atmospheric CO2 on annual basis, making the entire study area a moderate net sink of about +0.13 Tg C yr-1. This average sink value for forested lands nonetheless masks the contribution of areas burned during the 1988 wildfires, which were estimated as net sources of CO2 to the atmosphere, totaling to a NEP flux of -0.04 Tg C yr-1 for the entire burned area. Several areas burned in the 1988 wildfires were estimated to be among the lowest in overall yearly NPP, namely the Hellroaring Fire, Mink Fire, and Falls Fire areas. Rates of

  2. Modeling Soil Quality Thresholds to Ecosystem Recovery at Fort Benning, Georgia, USA

    Energy Technology Data Exchange (ETDEWEB)

    Garten Jr., C.T.

    2004-03-08

    The objective of this research was to use a simple model of soil C and N dynamics to predict nutrient thresholds to ecosystem recovery on degraded soils at Fort Benning, Georgia, in the southeastern USA. The model calculates aboveground and belowground biomass, soil C inputs and dynamics, soil N stocks and availability, and plant N requirements. A threshold is crossed when predicted soil N supplies fall short of predicted N required to sustain biomass accrual at a specified recovery rate. Four factors were important to development of thresholds to recovery: (1) initial amounts of aboveground biomass, (2) initial soil C stocks (i.e., soil quality), (3) relative recovery rates of biomass, and (4) soil sand content. Thresholds to ecosystem recovery predicted by the model should not be interpreted independent of a specified recovery rate. Initial soil C stocks influenced the predicted patterns of recovery by both old field and forest ecosystems. Forests and old fields on soils with varying sand content had different predicted thresholds to recovery. Soil C stocks at barren sites on Fort Benning generally lie below predicted thresholds to 100% recovery of desired future ecosystem conditions defined on the basis of aboveground biomass (18000 versus 360 g m{sup -2} for forests and old fields, respectively). Calculations with the model indicated that reestablishment of vegetation on barren sites to a level below the desired future condition is possible at recovery rates used in the model, but the time to 100% recovery of desired future conditions, without crossing a nutrient threshold, is prolonged by a reduced rate of forest growth. Predicted thresholds to ecosystem recovery were less on soils with more than 70% sand content. The lower thresholds for old field and forest recovery on more sandy soils are apparently due to higher relative rates of net soil N mineralization in more sandy soils. Calculations with the model indicate that a combination of desired future

  3. Modelling the ecological vulnerability to forest fires in mediterranean ecosystems using geographic information technologies.

    Science.gov (United States)

    Duguy, Beatriz; Alloza, José Antonio; Baeza, M Jaime; De la Riva, Juan; Echeverría, Maite; Ibarra, Paloma; Llovet, Juan; Cabello, Fernando Pérez; Rovira, Pere; Vallejo, Ramon V

    2012-12-01

    Forest fires represent a major driver of change at the ecosystem and landscape levels in the Mediterranean region. Environmental features and vegetation are key factors to estimate the ecological vulnerability to fire; defined as the degree to which an ecosystem is susceptible to, and unable to cope with, adverse effects of fire (provided a fire occurs). Given the predicted climatic changes for the region, it is urgent to validate spatially explicit tools for assessing this vulnerability in order to support the design of new fire prevention and restoration strategies. This work presents an innovative GIS-based modelling approach to evaluate the ecological vulnerability to fire of an ecosystem, considering its main components (soil and vegetation) and different time scales. The evaluation was structured in three stages: short-term (focussed on soil degradation risk), medium-term (focussed on changes in vegetation), and coupling of the short- and medium-term vulnerabilities. The model was implemented in two regions: Aragón (inland North-eastern Spain) and Valencia (eastern Spain). Maps of the ecological vulnerability to fire were produced at a regional scale. We partially validated the model in a study site combining two complementary approaches that focused on testing the adequacy of model's predictions in three ecosystems, all very common in fire-prone landscapes of eastern Spain: two shrublands and a pine forest. Both approaches were based on the comparison of model's predictions with values of NDVI (Normalized Difference Vegetation Index), which is considered a good proxy for green biomass. Both methods showed that the model's performance is satisfactory when applied to the three selected vegetation types.

  4. USGS River Ecosystem Modeling: Where Are We, How Did We Get Here, and Where Are We Going?

    Science.gov (United States)

    Hanson, Leanne; Schrock, Robin; Waddle, Terry; Duda, Jeffrey J.; Lellis, Bill

    2009-01-01

    This report developed as an outcome of the USGS River Ecosystem Modeling Work Group, convened on February 11, 2008 as a preconference session to the second USGS Modeling Conference in Orange Beach, Ala. Work Group participants gained an understanding of the types of models currently being applied to river ecosystem studies within the USGS, learned how model outputs are being used by a Federal land management agency, and developed recommendations for advancing the state of the art in river ecosystem modeling within the USGS. During a break-out session, participants restated many of the recommendations developed at the first USGS Modeling Conference in 2006 and in previous USGS needs assessments. All Work Group recommendations require organization and coordination across USGS disciplines and regions, and include (1) enhancing communications, (2) increasing efficiency through better use of current human and technologic resources, and (3) providing a national infrastructure for river ecosystem modeling resources, making it easier to integrate modeling efforts. By implementing these recommendations, the USGS will benefit from enhanced multi-disciplinary, integrated models for river ecosystems that provide valuable risk assessment and decision support tools for adaptive management of natural and managed riverine ecosystems. These tools generate key information that resource managers need and can use in making decisions about river ecosystem resources.

  5. The limnic ecosystems at Forsmark and Laxemar-Simpevarp. Site descriptive modelling SDM-Site

    International Nuclear Information System (INIS)

    Norden, Sara; Soederbaeck, Bjoern; Andersson, Eva

    2008-11-01

    The overall objective of this report is to provide a thorough description of the limnic ecosystems at both Forsmark and Laxemar-Simpevarp. This information may be used in the Safety Assessment and as a basis for the Environmental Impact Assessment. Three aims were set up for the report: 1) to characterize and describe the limnic ecosystems today and in the past in the Forsmark and Laxemar-Simpevarp areas and compare these ecosystems with limnic ecosystems in other areas; 2) to evaluate and visualize major pools, fluxes and sinks of elements within the limnic ecosystems; and finally 3) to describe human impact on the limnic ecosystems. The report includes a thorough description of the lakes and streams in Forsmark and Laxemar-Simpevarp and covers the following areas: catchment area characteristics, hydrology, climate, sediment characteristics, physical characteristics of streams, habitat distribution in lakes, biotic components, water chemistry, comparisons with other lakes and streams in the region, and a historical description. Ecosystem models for carbon and mass balances for a number of elements have been calculated to further improve the understanding of the lake ecosystems. Important processes for the safety assessment are described and evaluated in the report. The Forsmark regional model area contains more than 20 permanent lakes and pools. All lakes are small and shallow, and are characterized as oligotrophic hardwater lakes. Calcareous soils in the area give rise to high calcium concentrations in the surface water, which in turn leads to high pH and low nutrient concentrations in water as phosphorus often co-precipitates with calcium. The shallow depths and moderate water colour permit photosynthesis in the entire benthic habitat of the lakes, and the bottoms are covered by dense stands of the macroalgae Chara sp. Moreover, many of the lakes also have a thick microbial mat (>10 cm), consisting of cyanobacteria and diatoms, in the benthic habitat. Fish in

  6. The PEcAn Project: Accessible Tools for On-demand Ecosystem Modeling

    Science.gov (United States)

    Cowdery, E.; Kooper, R.; LeBauer, D.; Desai, A. R.; Mantooth, J.; Dietze, M.

    2014-12-01

    Ecosystem models play a critical role in understanding the terrestrial biosphere and forecasting changes in the carbon cycle, however current forecasts have considerable uncertainty. The amount of data being collected and produced is increasing on daily basis as we enter the "big data" era, but only a fraction of this data is being used to constrain models. Until we can improve the problems of model accessibility and model-data communication, none of these resources can be used to their full potential. The Predictive Ecosystem Analyzer (PEcAn) is an ecoinformatics toolbox and a set of workflows that wrap around an ecosystem model and manage the flow of information in and out of regional-scale TBMs. Here we present new modules developed in PEcAn to manage the processing of meteorological data, one of the primary driver dependencies for ecosystem models. The module downloads, reads, extracts, and converts meteorological observations to Unidata Climate Forecast (CF) NetCDF community standard, a convention used for most climate forecast and weather models. The module also automates the conversion from NetCDF to model specific formats, including basic merging, gap-filling, and downscaling procedures. PEcAn currently supports tower-based micrometeorological observations at Ameriflux and FluxNET sites, site-level CSV-formatted data, and regional and global reanalysis products such as the North American Regional Reanalysis and CRU-NCEP. The workflow is easily extensible to additional products and processing algorithms.These meteorological workflows have been coupled with the PEcAn web interface and now allow anyone to run multiple ecosystem models for any location on the Earth by simply clicking on an intuitive Google-map based interface. This will allow users to more readily compare models to observations at those sites, leading to better calibration and validation. Current work is extending these workflows to also process field, remotely-sensed, and historical

  7. Seasonal changes in nutrient limitation and nitrate sources in the green macroalga Ulva lactuca at sites with and without green tides in a northeastern Pacific embayment.

    Science.gov (United States)

    Van Alstyne, Kathryn L

    2016-02-15

    In Penn Cove, ulvoid green algal mats occur annually. To examine seasonal variation in their causes, nitrogen and carbon were measured in Ulva lactuca in May, July, and September and stable nitrogen and oxygen isotope ratios were quantified in U. lactuca, Penn Cove seawater, upwelled water from Saratoga Passage, water near the Skagit River outflow, and effluents from wastewater treatment facilities. Ulvoid growth was nitrogen limited and the sources of nitrogen used by the algae changed during the growing season. Algal nitrogen concentrations were 0.85-4.55% and were highest in September and at sites where algae were abundant. Upwelled waters were the primary nitrogen source for the algae, but anthropogenic sources also contributed to algal growth towards the end of the growing season. This study suggests that small nitrogen inputs can result in crossing a "tipping point", causing the release of nutrient limitation and localized increases in algal growth. Copyright © 2015 Elsevier Ltd. All rights reserved.

  8. Nutrient limitation and microbially mediated chemistry: studies using tuff inoculum obtained from the Exploratory Studies Facility, Yucca Mountain

    International Nuclear Information System (INIS)

    Chen, C. I.; Chuu, Y. J.; Meike, A.; Ringelberg, D.; Sawvel, A.

    1998-01-01

    Flow-through bioreactors are used to investigate the relationship between the supply (and limitation) of major nutrients required by microorganisms (C, N, P, S) and effluent chemistry to obtain data that can be useful to develop models of microbially mediated aqueous chemistry. The bioreactors were inoculated with crushed tuff from Yucca Mountain. Six of the 14 bioreactor experiments currently in operation have shown growth, which occurred in as few as 5 days and as much as a few months after initiation of the experiment. All of the bioreactors exhibiting growth contained glucose as a carbon source, but other nutritional components varied. Chemical signatures of each bioreactor were compared to each other and selected results were compared to computer simulations of the equivalent abiotic chemical reactions. At 21 C, the richest medium formulation produced a microbial community that lowered the effluent pH from 6.4 to as low as 3.9. The same medium formulation at 50 C produced no significant change in pH but caused a significant increase in Cl after a period of 200 days. Variations in concentrations of other elements, some of which appear to be periodic (Ca, Mg, etc.) also occur. Bioreactors fed with low C, N, P, S media showed growth, but had stabilized at lower cell densities. The room temperature bioreactor in this group exhibited a phospholipid fatty acid (PLFA) signature of sulfur- or iron-reducing bacteria, which produced a significant chemical signature in the effluent from that bioreactor. Growth had not been observed yet in the alkaline bioreactors, even in those containing glucose. The value of combining detailed chemical and community (e.g., ester-linked PLFA) analyses, long-duration experiments, and abiotic chemical models to distinguish chemical patterns is evident. Although all of the bioreactors contain the same initial microorganisms and mineral constituents, PLFA analysis demonstrates that both input chemistry and temperature determine the

  9. Nitrogen controls on ecosystem carbon sequestration: a model implementation and application to Saskatchewan, Canada

    Science.gov (United States)

    Liu, J.; Price, D.T.; Chen, J.M.

    2005-01-01

    A plant–soil nitrogen (N) cycling model was developed and incorporated into the Integrated BIosphere Simulator (IBIS) of Foley et al. [Foley, J.A., Prentice, I.C., Ramankutty, N., Levis, S., Pollard, D., Sitch, S., Haxeltine, A., 1996. An integrated biosphere model of land surface process, terrestrial carbon balance and vegetation dynamics. Global Biogeochem. Cycles 10, 603–628]. In the N-model, soil mineral N regulates ecosystem carbon (C) fluxes and ecosystem C:N ratios. Net primary productivity (NPP) is controlled by feedbacks from both leaf C:N and soil mineral N. Leaf C:N determines the foliar and canopy photosynthesis rates, while soil mineral N determines the N availability for plant growth and the efficiency of biomass construction. Nitrogen controls on the decomposition of soil organic matter (SOM) are implemented through N immobilization and mineralization separately. The model allows greater SOM mineralization at lower mineral N, and conversely, allows greater N immobilization at higher mineral N. The model's seasonal and inter-annual behaviours are demonstrated. A regional simulation for Saskatchewan, Canada, was performed for the period 1851–2000 at a 10 km × 10 km resolution. Simulated NPP was compared with high-resolution (1 km × 1 km) NPP estimated from remote sensing data using the boreal ecosystem productivity simulator (BEPS) [Liu, J., Chen, J.M., Cihlar, J., Park, W.M., 1997. A process-based boreal ecosystem productivity simulator using remote sensing inputs. Remote Sens. Environ. 44, 81–87]. The agreement between IBIS and BEPS, particularly in NPP spatial variation, was considerably improved when the N controls were introduced into IBIS.

  10. Modelling Potential Consequences of Different Geo-Engineering Treatments for the Baltic Sea Ecosystem

    Science.gov (United States)

    Schrum, C.; Daewel, U.

    2017-12-01

    From 1950 onwards, the Baltic Sea ecosystem suffered increasingly from eutrophication. The most obvious reason for the eutrophication is the huge amount of nutrients (nitrogen and phosphorus) reaching the Baltic Sea from human activities. However, although nutrient loads have been decreasing since 1980, the hypoxic areas have not decreased accordingly. Thus, geo-engineering projects were discussed and evaluated to artificially ventilate the Baltic Sea deep water and suppress nutrient release from the sediments. Here, we aim at understanding the consequences of proposed geo-engineering projects in the Baltic Sea using long-term scenario modelling. For that purpose, we utilize a 3d coupled ecosystem model ECOSMO E2E, a novel NPZD-Fish model approach that resolves hydrodynamics, biogeochemical cycling and lower and higher trophic level dynamics. We performed scenario modelling that consider proposed geo-engineering projects such as artificial ventilation of Baltic Sea deep waters and phosphorus binding in sediments with polyaluminium chlorides. The model indicates that deep-water ventilation indeed suppresses phosphorus release in the first 1-4 years of treatment. Thereafter macrobenthos repopulates the formerly anoxic bottom regions and nutrients are increasingly recycled in the food web. Consequently, overall system productivity and fish biomass increases and toxic algae blooms decrease. However, deep-water ventilation has no long-lasting effect on the ecosystem: soon after completion of the ventilation process, the system turns back into its original state. Artificial phosphorus binding in sediments in contrast decreases overall ecosystem productivity through permanent removal of phosphorus. As expected it decreases bacterial production and toxic algae blooms, but it also decreases fish production substantially. Contrastingly to deep water ventilation, artificial phosphorus binding show a long-lasting effect over decades after termination of the treatment.

  11. Modelling carbon and water flows in terrestrial ecosystems in the boreal zone - examples from Oskarshamn

    Energy Technology Data Exchange (ETDEWEB)

    Karlberg, Louise [Stockholm Environment Institute (SEI), Stockholm (Sweden); Gu stafsson, David; Jansson, Per-Erik [Royal Inst. of Technology, Dept. of Land and Water Resources Engineering, Stockholm (Sweden)

    2007-12-15

    Carbon budgets and mean residence times were estimated in four hypothetical ecosystems. The greatest uncertainties in the estimations lie in the calculation of fluxes to and from the field layer. A parametrisation method based on multiple criteria, synthesising a wide range of empirical knowledge on ecosystem behaviour, proved to be useful both in the estimation of unknown parameters, to demonstrate model sensitivity, and to identify processes where our current knowledge is limited. The parameterizations derived from the study of the hypothetical systems were used to estimate site-specific carbon and water budgets for four ecosystems located within the Oskarshamn study-area. Measured soil respiration was used to calibrate the simulations. An analysis of the simulated carbon fluxes indicated that two of the ecosystems, namely the grassland and the spruce forest, were net sources of carbon dioxide, while the alder and the pine forest were net sinks of CO{sub 2}. In the former case, this was interpreted as a result of recent drainage of the organogenic soils and the concurrent increase in decomposition. The results from the study conformed rather well with results from a previous study on carbon budgets from the Oskarshamn study area.

  12. Modelling carbon and water flows in terrestrial ecosystems in the boreal zone - examples from Oskarshamn

    International Nuclear Information System (INIS)

    Karlberg, Louise; Gu stafsson, David; Jansson, Per-Erik

    2007-12-01

    Carbon budgets and mean residence times were estimated in four hypothetical ecosystems. The greatest uncertainties in the estimations lie in the calculation of fluxes to and from the field layer. A parametrisation method based on multiple criteria, synthesising a wide range of empirical knowledge on ecosystem behaviour, proved to be useful both in the estimation of unknown parameters, to demonstrate model sensitivity, and to identify processes where our current knowledge is limited. The parameterizations derived from the study of the hypothetical systems were used to estimate site-specific carbon and water budgets for four ecosystems located within the Oskarshamn study-area. Measured soil respiration was used to calibrate the simulations. An analysis of the simulated carbon fluxes indicated that two of the ecosystems, namely the grassland and the spruce forest, were net sources of carbon dioxide, while the alder and the pine forest were net sinks of CO 2 . In the former case, this was interpreted as a result of recent drainage of the organogenic soils and the concurrent increase in decomposition. The results from the study conformed rather well with results from a previous study on carbon budgets from the Oskarshamn study area

  13. Biological soil crusts (biocrusts) as a model system in community, landscape and ecosystem ecology

    Science.gov (United States)

    Bowker, Matthew A.; Maestre, Fernando T.; Eldridge, David; Belnap, Jayne; Castillo-Monroy, Andrea; Escolar, Cristina; Soliveres, Santiago

    2014-01-01

    Model systems have had a profound influence on the development of ecological theory and general principles. Compared to alternatives, the most effective models share some combination of the following characteristics: simpler, smaller, faster, general, idiosyncratic or manipulable. We argue that biological soil crusts (biocrusts) have unique combinations of these features that should be more widely exploited in community, landscape and ecosystem ecology. In community ecology, biocrusts are elucidating the importance of biodiversity and spatial pattern for maintaining ecosystem multifunctionality due to their manipulability in experiments. Due to idiosyncrasies in their modes of facilitation and competition, biocrusts have led to new models on the interplay between environmental stress and biotic interactions and on the maintenance of biodiversity by competitive processes. Biocrusts are perhaps one of the best examples of micro-landscapes—real landscapes that are small in size. Although they exhibit varying patch heterogeneity, aggregation, connectivity and fragmentation, like macro-landscapes, they are also compatible with well-replicated experiments (unlike macro-landscapes). In ecosystem ecology, a number of studies are imposing small-scale, low cost manipulations of global change or state factors in biocrust micro-landscapes. The versatility of biocrusts to inform such disparate lines of inquiry suggests that they are an especially useful model system that can enable researchers to see ecological principles more clearly and quickly.

  14. Modeling coupled interactions of carbon, water, and ozone exchange between terrestrial ecosystems and the atmosphere. I: Model description

    International Nuclear Information System (INIS)

    Nikolov, Ned; Zeller, Karl F.

    2003-01-01

    A new biophysical model (FORFLUX) is presented to link ozone deposition with carbon and water cycles in terrestrial ecosystems. - A new biophysical model (FORFLUX) is presented to study the simultaneous exchange of ozone, carbon dioxide, and water vapor between terrestrial ecosystems and the atmosphere. The model mechanistically couples all major processes controlling ecosystem flows trace gases and water implementing recent concepts in plant eco-physiology, micrometeorology, and soil hydrology. FORFLUX consists of four interconnected modules-a leaf photosynthesis model, a canopy flux model, a soil heat-, water- and CO 2 - transport model, and a snow pack model. Photosynthesis, water-vapor flux and ozone uptake at the leaf level are computed by the LEAFC3 sub-model. The canopy module scales leaf responses to a stand level by numerical integration of the LEAFC3 model over canopy leaf area index (LAI). The integration takes into account (1) radiative transfer inside the canopy, (2) variation of foliage photosynthetic capacity with canopy depth, (3) wind speed attenuation throughout the canopy, and (4) rainfall interception by foliage elements. The soil module uses principles of the diffusion theory to predict temperature and moisture dynamics within the soil column, evaporation, and CO 2 efflux from soil. The effect of soil heterogeneity on field-scale fluxes is simulated employing the Bresler-Dagan stochastic concept. The accumulation and melt of snow on the ground is predicted using an explicit energy balance approach. Ozone deposition is modeled as a sum of three fluxes- ozone uptake via plant stomata, deposition to non-transpiring plant surfaces, and ozone flux into the ground. All biophysical interactions are computed hourly while model projections are made at either hourly or daily time step. FORFLUX represents a comprehensive approach to studying ozone deposition and its link to carbon and water cycles in terrestrial ecosystems

  15. Introducing mixotrophy into a biogeochemical model describing an eutrophied coastal ecosystem: The Southern North Sea

    Science.gov (United States)

    Ghyoot, Caroline; Lancelot, Christiane; Flynn, Kevin J.; Mitra, Aditee; Gypens, Nathalie

    2017-09-01

    Most biogeochemical/ecological models divide planktonic protists between phototrophs (phytoplankton) and heterotrophs (zooplankton). However, a large number of planktonic protists are able to combine several mechanisms of carbon and nutrient acquisition. Not representing these multiple mechanisms in biogeochemical/ecological models describing eutrophied coastal ecosystems can potentially lead to different conclusions regarding ecosystem functioning, especially regarding the success of harmful algae, which are often reported as mixotrophic. This modelling study investigates the implications for trophic dynamics of including 3 contrasting forms of mixotrophy, namely osmotrophy (using alkaline phosphatase activity, APA), non-constitutive mixotrophy (acquired phototrophy by microzooplankton) and also constitutive mixotrophy. The application is in the Southern North Sea, an ecosystem that faced, between 1985 and 2005, a significant increase in the nutrient supply N:P ratio (from 31 to 81 mol N:P). The comparison with a traditional model shows that, when the winter N:P ratio in the Southern North Sea is above 22 molN molP-1 (as occurred from mid-1990s), APA allows a 3-32% increase of annual gross primary production (GPP). In result of the higher GPP, the annual sedimentation increases as well as the bacterial production. By contrast, APA does not affect the export of matter to higher trophic levels because the increased GPP is mainly due to Phaeocystis colonies, which are not grazed by copepods. Under high irradiance, non-constitutive mixotrophy appreciably increases annual GPP, transfer to higher trophic levels, sedimentation, and nutrient remineralisation. In this ecosystem, non-constitutive mixotrophy is also observed to have an indirect stimulating effect on diatoms. Constitutive mixotrophy in nanoflagellates appears to have little influence on this ecosystem functioning. An important conclusion from this work is that contrasting forms of mixotrophy have different

  16. The limnic ecosystems at Forsmark and Laxemar-Simpevarp. Site descriptive modelling SDM-Site

    Energy Technology Data Exchange (ETDEWEB)

    Norden, Sara; Soederbaeck, Bjoern [Swedish Nuclear Fuel and Waste Management Co., Stockholm (Sweden); Andersson, Eva [SWECO, Stockholm (Sweden)

    2008-11-15

    The overall objective of this report is to provide a thorough description of the limnic ecosystems at both Forsmark and Laxemar-Simpevarp. This information may be used in the Safety Assessment and as a basis for the Environmental Impact Assessment. Three aims were set up for the report: 1) to characterize and describe the limnic ecosystems today and in the past in the Forsmark and Laxemar-Simpevarp areas and compare these ecosystems with limnic ecosystems in other areas; 2) to evaluate and visualize major pools, fluxes and sinks of elements within the limnic ecosystems; and finally 3) to describe human impact on the limnic ecosystems. The report includes a thorough description of the lakes and streams in Forsmark and Laxemar-Simpevarp and covers the following areas: catchment area characteristics, hydrology, climate, sediment characteristics, physical characteristics of streams, habitat distribution in lakes, biotic components, water chemistry, comparisons with other lakes and streams in the region, and a historical description. Ecosystem models for carbon and mass balances for a number of elements have been calculated to further improve the understanding of the lake ecosystems. Important processes for the safety assessment are described and evaluated in the report. The Forsmark regional model area contains more than 20 permanent lakes and pools. All lakes are small and shallow, and are characterized as oligotrophic hardwater lakes. Calcareous soils in the area give rise to high calcium concentrations in the surface water, which in turn leads to high pH and low nutrient concentrations in water as phosphorus often co-precipitates with calcium. The shallow depths and moderate water colour permit photosynthesis in the entire benthic habitat of the lakes, and the bottoms are covered by dense stands of the macroalgae Chara sp. Moreover, many of the lakes also have a thick microbial mat (>10 cm), consisting of cyanobacteria and diatoms, in the benthic habitat. Fish in

  17. Testing the performance of a Dynamic Global Ecosystem Model: Water balance, carbon balance, and vegetation structure

    Science.gov (United States)

    Kucharik, Christopher J.; Foley, Jonathan A.; Delire, Christine; Fisher, Veronica A.; Coe, Michael T.; Lenters, John D.; Young-Molling, Christine; Ramankutty, Navin; Norman, John M.; Gower, Stith T.

    2000-09-01

    While a new class of Dynamic Global Ecosystem Models (DGEMs) has emerged in the past few years as an important tool for describing global biogeochemical cycles and atmosphere-biosphere interactions, these models are still largely untested. Here we analyze the behavior of a new DGEM and compare the results to global-scale observations of water balance, carbon balance, and vegetation structure. In this study, we use version 2 of the Integrated Biosphere Simulator (IBIS), which includes several major improvements and additions to the prototype model developed by Foley et al. [1996]. IBIS is designed to be a comprehensive model of the terrestrial biosphere; the model represents a wide range of processes, including land surface physics, canopy physiology, plant phenology, vegetation dynamics and competition, and carbon and nutrient cycling. The model generates global simulations of the surface water balance (e.g., runoff), the terrestrial carbon balance (e.g., net primary production, net ecosystem exchange, soil carbon, aboveground and belowground litter, and soil CO2 fluxes), and vegetation structure (e.g., biomass, leaf area index, and vegetation composition). In order to test the performance of the model, we have assembled a wide range of continental and global-scale data, including measurements of river discharge, net primary production, vegetation structure, root biomass, soil carbon, litter carbon, and soil CO2 flux. Using these field data and model results for the contemporary biosphere (1965-1994), our evaluation shows that simulated patterns of runoff, NPP, biomass, leaf area index, soil carbon, and total soil CO2 flux agree reasonably well with measurements that have been compiled from numerous ecosystems. These results also compare favorably to other global model results.

  18. Modeling Temporal and Spatial Flows of Ecosystem Services in Chittenden County, VT

    Science.gov (United States)

    Voigt, B. G.; Bagstad, K.; Johnson, G.; Villa, F.

    2010-12-01

    This paper documents the integration of ARIES (ARtificial Intelligence for Ecosystem Services) with the land use change model UrbanSim to explore the impacts of current and future land use patterns on flood protection and water provision services in Chittenden County, VT. ARIES, an open source modeling platform, is particularly well-suited for measuring, mapping, and modeling the temporal and spatial flows of ecosystem services across the landscape, linking the areas of provision (sources) with human beneficiaries (users) through a spatially explicit agent-based modeling approach. UrbanSim is an open source agent-based land use model designed to facilitate a wide-range of scenarios based on user-specified behavioral assumptions, zoning regulations, and demographic, economic, and infrastructure (e.g. transportation, water, sewer, etc.) parameters. Ecosystem services travel through time and space and are susceptible to disruption and destruction from both natural and anthropogenic perturbations. The conversion of forested or agricultural land to urbanizing uses is replete with a long history of hydrologic impairment, habitat fragmentation, and the degradation of sensitive landscapes. Development decisions are predicated on the presence of landscape characteristics that meet the needs of developers and satisfy the desires of consumers, with minimal consideration of access to or effect on the provision of ecosystem services. The County houses nearly 25% of the state’s population and several employment centers that draw labor from throughout the region. Additionally, the County is expected to maintain modest residential and employment growth over the next 30 years, and will continue to serve as the state’s population and employment center. Expected future growth is likely to adversely affect the remaining farm and forest land in the County in the absence of policies to support sustainable development. We demonstrate how ARIES can be used to quantify changes in

  19. Parasite infection alters nitrogen cycling at the ecosystem scale.

    Science.gov (United States)

    Mischler, John; Johnson, Pieter T J; McKenzie, Valerie J; Townsend, Alan R

    2016-05-01

    Despite growing evidence that parasites often alter nutrient flows through their hosts and can comprise a substantial amount of biomass in many systems, whether endemic parasites influence ecosystem nutrient cycling, and which nutrient pathways may be important, remains conjectural. A framework to evaluate how endemic parasites alter nutrient cycling across varied ecosystems requires an understanding of the following: (i) parasite effects on host nutrient excretion; (ii) ecosystem nutrient limitation; (iii) effects of parasite abundance, host density, host functional role and host excretion rate on nutrient flows; and (iv) how this infection-induced nutrient flux compares to other pools and fluxes. Pathogens that significantly increase the availability of a limiting nutrient within an ecosystem should produce a measurable ecosystem-scale response. Here, we combined field-derived estimates of trematode parasite infections in aquatic snails with measurements of snail excretion and tissue stoichiometry to show that parasites are capable of altering nutrient excretion in their intermediate host snails (dominant grazers). We integrated laboratory measurements of host nitrogen excretion with field-based estimates of infection in an ecosystem model and compared these fluxes to other pools and fluxes of nitrogen as measured in the field. Eighteen nitrogen-limited ponds were examined to determine whether infection had a measurable effect on ecosystem-scale nitrogen cycling. Because of their low nitrogen content and high demand for host carbon, parasites accelerated the rate at which infected hosts excreted nitrogen to the water column in a dose-response manner, thereby shifting nutrient stoichiometry and availability at the ecosystem scale. Infection-enhanced fluxes of dissolved inorganic nitrogen were similar to other commonly important environmental sources of bioavailable nitrogen to the system. Additional field measurements within nitrogen-limited ponds indicated that

  20. Experimental study and modelization of radium transfer in a simplified aquatic ecosystem

    International Nuclear Information System (INIS)

    Bruno, V.

    1990-11-01

    Radium transfer has been studied in an experimental aquatic ecosystem composed by four trophic levels. Water and sediment are the two abiotic units from which the other compartments could be contamined. Scenedesmus obliquus represents the primary producer. Daphnia magna, Gammarus pulex and Chironomus sp., the first order consumers; Cyprinius carpio, the second order consumer and Salmo gairdneri, the third order one. Each transfer is described by a mathematical equation, based on a theoretical analysis, which represents concentration evolution of each compartment as a function of time. From the experimental data, we suggest a mathematical model in order to simulate radium contamination of the ecosystem. This model takes into account the following parameters: the contamination mode (chronic or acute pollution), the type of ecosystem concerned by the contamination (pond or river), and the season during which the pollution occurred. Results obtained with the model agree with most of field data on contamination level of fish living in the mining complex environment; particularly, they put the emphasize on the trophic way for the fish radiocontamination [fr

  1. Using Coupled Simulation Models to Link Pastoral Decision Making and Ecosystem Services

    Directory of Open Access Journals (Sweden)

    Randall B. Boone

    2011-06-01

    Full Text Available Historically, pastoral people were able to more freely use the services their semi-arid and arid ecosystems provide, and they adapted to changes in ways that improved their well-being. More recently, their ability to adapt has been constrained due to changes from within and from outside their communities. To compare possible responses by pastoral communities, we modeled ecosystem services and tied those services to decisions that people make at the household level. We created an agent-based household model called DECUMA, joined that model with the ecosystem model SAVANNA, and applied the linked models to southeastern Kajiado District, Kenya. The structure of the new agent-based model and linkages between the models are described, and then we demonstrate the model results using a scenario that shows changes in Maasai well-being in response to drought. We then explore two additional but related scenarios, quantifying household well-being if access to a grazing reserve is lost and if access is lost but those most affected are compensated. In the second scenario, households in group ranches abutting the grazing reserve that lost access had large declines in livestock populations, less food energy from animal sources, increased livestock sales and grain purchases, and increased need for supplemental foods. Households in more distant areas showed no changes or had increases in livestock populations because their herds had fewer animals with which to compete for forage. When households neighboring the grazing reserve were compensated for the lease of the lands they had used, they prospered. We describe some benefits and limitations of the agent-based approach.

  2. Development of a coupled physical-biological ecosystem model ECOSMO - Part I: Model description and validation for the North Sea

    DEFF Research Database (Denmark)

    Schrum, Corinna; Alekseeva, I.; St. John, Michael

    2006-01-01

    A 3-D coupled biophysical model ECOSMO (ECOSystem MOdel) has been developed. The biological module of ECOSMO is based on lower trophic level interactions between two phyto- and two zooplankton components. The dynamics of the different phytoplankton components are governed by the availability...... of the macronutrients nitrogen, phosphate and silicate as well as light. Zooplankton production is simulated based on the consumption of the different phytoplankton groups and detritus. The biological module is coupled to a nonlinear 3-D baroclinic model. The physical and biological modules are driven by surface...... showed that the model, based on consideration of limiting processes, is able to reproduce the observed spatial and seasonal variability of the North Sea ecosystem e.g. the spring bloom, summer sub-surface production and the fall bloom. Distinct differences in regional characteristics of diatoms...

  3. Ecosystem Services Modeling as a Tool for Defining Priority Areas for Conservation.

    Directory of Open Access Journals (Sweden)

    Gabriela Teixeira Duarte

    Full Text Available Conservationists often have difficulty obtaining financial and social support for protected areas that do not demonstrate their benefits for society. Therefore, ecosystem services have gained importance in conservation science in the last decade, as these services provide further justification for appropriate management and conservation of natural systems. We used InVEST software and a set of GIS procedures to quantify, spatialize and evaluated the overlap between ecosystem services-carbon stock and sediment retention-and a biodiversity proxy-habitat quality. In addition, we proposed a method that serves as an initial approach of a priority areas selection process. The method considers the synergism between ecosystem services and biodiversity conservation. Our study region is the Iron Quadrangle, an important Brazilian mining province and a conservation priority area located in the interface of two biodiversity hotspots, the Cerrado and Atlantic Forest biomes. The resultant priority area for the maintenance of the highest values of ecosystem services and habitat quality was about 13% of the study area. Among those priority areas, 30% are already within established strictly protected areas, and 12% are in sustainable use protected areas. Following the transparent and highly replicable method we proposed in this study, conservation planners can better determine which areas fulfill multiple goals and can locate the trade-offs in the landscape. We also gave a step towards the improvement of the habitat quality model with a topography parameter. In areas of very rugged topography, we have to consider geomorfometric barriers for anthropogenic impacts and for species movement and we must think beyond the linear distances. Moreover, we used a model that considers the tree mortality caused by edge effects in the estimation of carbon stock. We found low spatial congruence among the modeled services, mostly because of the pattern of sediment retention

  4. Ecosystem Services Modeling as a Tool for Defining Priority Areas for Conservation.

    Science.gov (United States)

    Duarte, Gabriela Teixeira; Ribeiro, Milton Cezar; Paglia, Adriano Pereira

    2016-01-01

    Conservationists often have difficulty obtaining financial and social support for protected areas that do not demonstrate their benefits for society. Therefore, ecosystem services have gained importance in conservation science in the last decade, as these services provide further justification for appropriate management and conservation of natural systems. We used InVEST software and a set of GIS procedures to quantify, spatialize and evaluated the overlap between ecosystem services-carbon stock and sediment retention-and a biodiversity proxy-habitat quality. In addition, we proposed a method that serves as an initial approach of a priority areas selection process. The method considers the synergism between ecosystem services and biodiversity conservation. Our study region is the Iron Quadrangle, an important Brazilian mining province and a conservation priority area located in the interface of two biodiversity hotspots, the Cerrado and Atlantic Forest biomes. The resultant priority area for the maintenance of the highest values of ecosystem services and habitat quality was about 13% of the study area. Among those priority areas, 30% are already within established strictly protected areas, and 12% are in sustainable use protected areas. Following the transparent and highly replicable method we proposed in this study, conservation planners can better determine which areas fulfill multiple goals and can locate the trade-offs in the landscape. We also gave a step towards the improvement of the habitat quality model with a topography parameter. In areas of very rugged topography, we have to consider geomorfometric barriers for anthropogenic impacts and for species movement and we must think beyond the linear distances. Moreover, we used a model that considers the tree mortality caused by edge effects in the estimation of carbon stock. We found low spatial congruence among the modeled services, mostly because of the pattern of sediment retention distribution.

  5. Linking genes to ecosystem trace gas fluxes in a large-scale model system

    Science.gov (United States)

    Meredith, L. K.; Cueva, A.; Volkmann, T. H. M.; Sengupta, A.; Troch, P. A.

    2017-12-01

    Soil microorganisms mediate biogeochemical cycles through biosphere-atmosphere gas exchange with significant impact on atmospheric trace gas composition. Improving process-based understanding of these microbial populations and linking their genomic potential to the ecosystem-scale is a challenge, particularly in soil systems, which are heterogeneous in biodiversity, chemistry, and structure. In oligotrophic systems, such as the Landscape Evolution Observatory (LEO) at Biosphere 2, atmospheric trace gas scavenging may supply critical metabolic needs to microbial communities, thereby promoting tight linkages between microbial genomics and trace gas utilization. This large-scale model system of three initially homogenous and highly instrumented hillslopes facilitates high temporal resolution characterization of subsurface trace gas fluxes at hundreds of sampling points, making LEO an ideal location to study microbe-mediated trace gas fluxes from the gene to ecosystem scales. Specifically, we focus on the metabolism of ubiquitous atmospheric reduced trace gases hydrogen (H2), carbon monoxide (CO), and methane (CH4), which may have wide-reaching impacts on microbial community establishment, survival, and function. Additionally, microbial activity on LEO may facilitate weathering of the basalt matrix, which can be studied with trace gas measurements of carbonyl sulfide (COS/OCS) and carbon dioxide (O-isotopes in CO2), and presents an additional opportunity for gene to ecosystem study. This work will present initial measurements of this suite of trace gases to characterize soil microbial metabolic activity, as well as links between spatial and temporal variability of microbe-mediated trace gas fluxes in LEO and their relation to genomic-based characterization of microbial community structure (phylogenetic amplicons) and genetic potential (metagenomics). Results from the LEO model system will help build understanding of the importance of atmospheric inputs to

  6. The Homeland Security Ecosystem: An Analysis of Hierarchical and Ecosystem Models and Their Influence on Decision Makers

    Science.gov (United States)

    2012-12-01

    ALPR Automated License Plate Readers DHS Department of Homeland Security DOJ Department of Justice EOA Ecosystem-Oriented Architectures FEMA...through the use of technology, including the use of automated license plate readers ( ALPR ), ballistics evidence from crime scenes and confiscated...interest, their associates, and the use of ALPR technology to track criminal suspects and their routes of travel. Other recommendations included: the

  7. Modeling mechanisms of vegetation change due to fire in a semi-arid ecosystem

    Science.gov (United States)

    White, J.D.; Gutzwiller, K.J.; Barrow, W.C.; Randall, L.J.; Swint, P.

    2008-01-01

    Vegetation growth and community composition in semi-arid environments is determined by water availability and carbon assimilation mechanisms specific to different plant types. Disturbance also impacts vegetation productivity and composition dependent on area affected, intensity, and frequency factors. In this study, a new spatially explicit ecosystem model is presented for the purpose of simulating vegetation cover type changes associated with fire disturbance in the northern Chihuahuan Desert region. The model is called the Landscape and Fire Simulator (LAFS) and represents physiological activity of six functional plant types incorporating site climate, fire, and seed dispersal routines for individual grid cells. We applied this model for Big Bend National Park, Texas, by assessing the impact of wildfire on the trajectory of vegetation communities over time. The model was initialized and calibrated based on landcover maps derived from Landsat-5 Thematic Mapper data acquired in 1986 and 1999 coupled with plant biomass measurements collected in the field during 2000. Initial vegetation cover change analysis from satellite data showed shrub encroachment during this time period that was captured in the simulated results. A synthetic 50-year climate record was derived from historical meteorological data to assess system response based on initial landcover conditions. This simulation showed that shrublands increased to the detriment of grass and yucca-ocotillo vegetation cover types indicating an ecosystem-level trajectory for shrub encroachment. Our analysis of simulated fires also showed that fires significantly reduced site biomass components including leaf area, stem, and seed biomass in this semi-arid ecosystem. In contrast to other landscape simulation models, this new model incorporates detailed physiological responses of functional plant types that will allow us to simulated the impact of increased atmospheric CO2 occurring with climate change coupled with fire

  8. Risks of ocean acidification in the California Current food web and fisheries: ecosystem model projections.

    Science.gov (United States)

    Marshall, Kristin N; Kaplan, Isaac C; Hodgson, Emma E; Hermann, Albert; Busch, D Shallin; McElhany, Paul; Essington, Timothy E; Harvey, Chris J; Fulton, Elizabeth A

    2017-04-01

    The benefits and ecosystem services that humans derive from the oceans are threatened by numerous global change stressors, one of which is ocean acidification. Here, we describe the effects of ocean acidification on an upwelling system that already experiences inherently low pH conditions, the California Current. We used an end-to-end ecosystem model (Atlantis), forced by downscaled global climate models and informed by a meta-analysis of the pH sensitivities of local taxa, to investigate the direct and indirect effects of future pH on biomass and fisheries revenues. Our model projects a 0.2-unit drop in pH during the summer upwelling season from 2013 to 2063, which results in wide-ranging magnitudes of effects across guilds and functional groups. The most dramatic direct effects of future pH may be expected on epibenthic invertebrates (crabs, shrimps, benthic grazers, benthic detritivores, bivalves), and strong indirect effects expected on some demersal fish, sharks, and epibenthic invertebrates (Dungeness crab) because they consume species known to be sensitive to changing pH. The model's pelagic community, including marine mammals and seabirds, was much less influenced by future pH. Some functional groups were less affected to changing pH in the model than might be expected from experimental studies in the empirical literature due to high population productivity (e.g., copepods, pteropods). Model results suggest strong effects of reduced pH on nearshore state-managed invertebrate fisheries, but modest effects on the groundfish fishery because individual groundfish species exhibited diverse responses to changing pH. Our results provide a set of projections that generally support and build upon previous findings and set the stage for hypotheses to guide future modeling and experimental analysis on the effects of OA on marine ecosystems and fisheries. © 2017 John Wiley & Sons Ltd.

  9. Modeling impacts of climate change on carbon dynamics in a steppe ecosystem in Inner Mongolia, China

    Energy Technology Data Exchange (ETDEWEB)

    Kang, Xiaoming; Wang, Jinzhi; Rui, Yichao; Niu, Haishan [Graduate Univ. of Chinese Academy of Sciences, Beijing (China). College of Resources and Environment; Hao, Yanbin; Cui, Xiaoyong; Wang, Yanfen [Graduate Univ. of Chinese Academy of Sciences, Beijing (China). College of Life Sciences; Li, Changsheng [New Hampshire Univ., Durham, NH (United States). Inst. for the Study of Earth, Ocean and Space

    2011-06-15

    Purpose: In this study, a process-oriented biogeochemistry model, denitrification-decomposition (DNDC), was employed and adapted to interpret and integrate the field observations that the tested ecosystem was a weak sink of atmospheric carbon dioxide (CO{sub 2}) in 2004 but a strong source in 2005 during the growing seasons. Then we applied the model to predict long-term impacts of climate change on carbon (C) dynamics in the semiarid grassland. Materials and methods: To adapt DNDC for the targeted grassland, we modified the default values of several grass parameters such as maximum biomass production, biomass partitions, plant tissue C/N ratio, and accumulative thermal degree days based on local observations. Daily weather data for 2004 and 2005 in conjunction with soil properties and management practices for the location were utilized as inputs to simulate the grass growth and soil C dynamics. The modeled C fluxes were compared with the eddy tower data. Sensitivity tests were conducted with a baseline and twelve alternative climate scenarios of 100 years for the target grassland. Results and discussion: The observed and modeled CO{sub 2} fluxes data were well in agreement (P < 0.0001), both showing that the grassland shifted from a sink to a source of atmospheric CO{sub 2} from a wet year (2004) to a dry year (2005) over growing season. Simulations of 100 years found that, under the fenced conditions, (1) the tested ecosystem would gain C with the baseline climate conditions at a rate of 200 kg C/ha/year; (2) the warmer and drier climate scenario made the worst case having the lowest grass production with 72 kg C/ha/year lost from the soil carbon pool; and (3) the cooler and wetter climate scenario made the best case having the highest biomass production with 790 kg C/ha/year sequestered in the soil during the simulated 100 years. Conclusions: DNDC model could be used for the prediction of C dynamics in this semiarid grassland ecosystem. Since the ecosystem

  10. Trophic mass-balance model of Alaska's Prince William Sound ecosystem, for the post-spill period 1994-1996

    International Nuclear Information System (INIS)

    Okey, T.A.; Pauly, D.

    1998-01-01

    The Ecopath modelling approach for the Prince William Sound (PWS) ecosystem was described. The area is the site of the 1989 Exxon Valdez oil spill (EVOS), the largest spill in U.S. history. 36,000 tonnes of crude oil spread throughout the central and southwestern PWS into the Gulf of Alaska and along the Kenai and Alaska Peninsula. The initial effects of the oil spill were catastrophic. The Ecopath modelling approach discussed in this report is aimed at providing a cohesive picture of the PWS ecosystem by constructing a mass-balanced model of food-web interactions and trophic flows using information collected since the EVOS. The model includes all biotic components of the ecosystem and provides a quantitative description of food-web interactions and relationships, as well as energy flows among components. The model can provide an understanding of how ecosystems respond to disturbances, such as oil spills. 216 refs., 74 tabs., 13 figs., 8 appendices

  11. Application of a terrestrial ecosystem model (ORCHIDEE-STICS) in simulating energy and CO2 fluxes in Asian rice croplands

    Science.gov (United States)

    Wang, X.; Piao, S.; Ciais, P.; Vuichard, N.

    2012-12-01

    Process-based terrestrial ecosystem models have shown great potentials in predicting the response of managed ecosystems to environmental changes. However, the simulated water and carbon fluxes over rice ecosystems in tropical Asia are still subject to large uncertainties, partly due to poorly constrained parameters in the models. Here, a terrestrial ecosystem model incorporating a more realistic crop module (ORCHIDEE-STICS) was calibrated against in-situ flux data and observed and remotely sensed leaf area indexes over rice ecosystems in Asia. The key parameters adjusted include maximum photosynthetic carboxylation rate (Vcmax) and electron transport rate (Vjmax), temperature sensitivity of heterotrophic respiration (Q10) and a series of critical thresholds for different crop development stages. Compared with the observations, the calibrated model more realistically simulated the seasonal and year-to-year variation of the observed water and carbon fluxes with reductions in the root mean square difference and better timing in the crop development stages. Sensitivity tests further reveal that management practices like the timing of transplanting and draining could affect the seasonal and inter-annual variation of the net carbon exchange, suggesting that the absence of explicit accounting the change of management practices in the terrestrial ecosystem models may induce large uncertainties in predicting cropland ecosystem response to future climate change.

  12. Description of the East Brazil Large Marine Ecosystem using a trophic model

    Directory of Open Access Journals (Sweden)

    Kátia M.F. Freire

    2008-09-01

    Full Text Available The objective of this study was to describe the marine ecosystem off northeastern Brazil. A trophic model was constructed for the 1970s using Ecopath with Ecosim. The impact of most of the forty-one functional groups was modest, probably due to the highly reticulated diet matrix. However, seagrass and macroalgae exerted a strong positive impact on manatee and herbivorous reef fishes, respectively. A high negative impact of omnivorous reef fishes on spiny lobsters and of sharks on swordfish was observed. Spiny lobsters and swordfish had the largest biomass changes for the simulation period (1978-2000; tunas, other large pelagics and sharks showed intermediate rates of biomass decline; and a slight increase in biomass was observed for toothed cetaceans, large carnivorous reef fishes, and dolphinfish. Recycling was an important feature of this ecosystem with low phytoplankton-originated primary production. The mean transfer efficiency between trophic levels was 11.4%. The gross efficiency of the fisheries was very low (0.00002, probably due to the low exploitation rate of most of the resources in the 1970s. Basic local information was missing for many groups. When information gaps are filled, this model may serve more credibly for the exploration of fishing policies for this area within an ecosystem approach.

  13. Population cycles and species diversity in dynamic Kill-the-Winner model of microbial ecosystems

    Science.gov (United States)

    Maslov, Sergei; Sneppen, Kim

    2017-01-01

    Determinants of species diversity in microbial ecosystems remain poorly understood. Bacteriophages are believed to increase the diversity by the virtue of Kill-the-Winner infection bias preventing the fastest growing organism from taking over the community. Phage-bacterial ecosystems are traditionally described in terms of the static equilibrium state of Lotka-Volterra equations in which bacterial growth is exactly balanced by losses due to phage predation. Here we consider a more dynamic scenario in which phage infections give rise to abrupt and severe collapses of bacterial populations whenever they become sufficiently large. As a consequence, each bacterial population in our model follows cyclic dynamics of exponential growth interrupted by sudden declines. The total population of all species fluctuates around the carrying capacity of the environment, making these cycles cryptic. While a subset of the slowest growing species in our model is always driven towards extinction, in general the overall ecosystem diversity remains high. The number of surviving species is inversely proportional to the variation in their growth rates but increases with the frequency and severity of phage-induced collapses. Thus counter-intuitively we predict that microbial communities exposed to more violent perturbations should have higher diversity. PMID:28051127

  14. Freshwater Ecosystem Service Flow Model To Evaluate Regional Water Security: A Case Study In Beijing-Tianjin-Hebei Region, China

    Science.gov (United States)

    Li, D.; Li, S.

    2016-12-01

    Freshwater service, as the most important support ecosystem service, is essential to human survival and development. Many studies have evidenced the spatial differences in the supply and demand of ecosystem services and raised the concept of ecosystem service flow. However, rather few studies quantitatively characterize the freshwater service flow. This paper aims to quantify the effect of freshwater ecosystem service flow on downstream areas in Beijing-Tianjin-Hebei (BTH) region, China over 2000, 2005 and 2010. We computed the freshwater ecosystem service provision with InVEST model. We calculated freshwater ecosystem service consumption with water quota method. We simulated the freshwater ecosystem service flow using our simplified flow model and assessed the regional water security with the improved freshwater security index. The freshwater provision service mainly depends on climatic factors that cannot be influenced by management, while the freshwater consumption service is constrained by human activities. Furthermore, the decrease of water quota for agricultural, domestic and industrial water counteracts the impact of increasing freshwater demand. The analysis of freshwater ecosystem service flow reveals that the majority area of the BTH (69.2%) is affected by upstream freshwater. If freshwater ecosystem service flow is considered, the water safety areas of the whole BTH account for 66.9%, 66.1%, 71.3%, which increase 6.4%, 6.8% and 5.7% in 2000, 2005 and 2010, respectively. These results highlight the need to understand the teleconnections between distant freshwater ecosystem service provision and local freshwater ecosystem service use. This approach therefore helps managers choose specific management and investment strategies for critical upstream freshwater provisions across different regions.

  15. Impacts of radiation exposure on the experimental microbial ecosystem: a particle-based model simulation approach

    International Nuclear Information System (INIS)

    Doi, M.; Tanaka, N.; Fuma, S.; Kawabata, Z.

    2004-01-01

    Well-designed experimental model ecosystem could be a simple reference of the actual environment and complex ecological systems. For ecological toxicity test of radiation and other environmental toxicants, we investigated and aquatic microbial ecosystem (closed microcosm) in the test tube with initial substrates,autotroph flagellate algae (Euglena, G.), heterotroph ciliate protozoa (Tetrahymena T.) and saprotroph bacteria (E, coli). These species organizes by itself to construct the ecological system, that keeps the sustainable population dynamics for more than 2 years after inoculation only by adding light diurnally and controlling temperature at 25 degree Celsius. Objective of the study is to develop the particle-based computer simulation by reviewing interactions among microbes and environment, and analyze the ecological toxicities of radiation on the microcosm by replicating experimental results in the computer simulation. (Author) 14 refs

  16. Adaptation and Mitigation Model for People to Restore Their Ecosystem from Flood in Semarang, Indonesia

    Directory of Open Access Journals (Sweden)

    Muzakar Isa

    2015-12-01

    Full Text Available The northern coast of Central Java province is considered as the critical area of flood path. Semarang as capital city of this province with its junction area of Kendal and Demak always suffering from flood due to rain and or high tide seawater. It is realised that infrastructures’ capacity for flood control, awareness of people and other multi-factors are significantly contributed on the flood problem in these area. Mixed-methods of quantitative and qualitative are employed to analyze the data. The study found that there was a decline in quality of - people’s life, environment and its ecosystem. Awareness and responsiveness of people and also the other stakeholders are not progressive to overcome the problem of flood. This study is trying to contribute in outlining a model of adaptation and mitigation for the people to restore their ecosystem from the perspective of economist.

  17. Potential Applications of Gosat Based Carbon Budget Products to Refine Terrestrial Ecosystem Model

    Science.gov (United States)

    Kondo, M.; Ichii, K.

    2011-12-01

    Estimation of carbon exchange in terrestrial ecosystem associates with difficulties due to complex entanglement of physical and biological processes: thus, the net ecosystem productivity (NEP) estimated from simulation often differs among process-based terrestrial ecosystem models. In addition to complexity of the system, validation can only be conducted in a point scale since reliable observation is only available from ground observations. With a lack of large spatial data, extension of model simulation to a global scale results in significant uncertainty in the future carbon balance and climate change. Greenhouse gases Observing SATellite (GOSAT), launched by the Japanese space agency (JAXA) in January, 2009, is the 1st operational satellite promised to deliver the net land-atmosphere carbon budget to the terrestrial biosphere research community. Using that information, the model reproducibility of carbon budget is expected to improve: hence, gives a better estimation of the future climate change. This initial analysis is to seek and evaluate the potential applications of GOSAT observation toward the sophistication of terrestrial ecosystem model. The present study was conducted in two processes: site-based analysis using eddy covariance observation data to assess the potential use of terrestrial carbon fluxes (GPP, RE, and NEP) to refine the model, and extension of the point scale analysis to spatial using Carbon Tracker product as a prototype of GOSAT product. In the first phase of the experiment, it was verified that an optimization routine adapted to a terrestrial model, Biome-BGC, yielded the improved result with respect to eddy covariance observation data from AsiaFlux Network. Spatial data sets used in the second phase were consists of GPP from empirical algorithm (e.g. support vector machine), NEP from Carbon Tracker, and RE from the combination of these. These spatial carbon flux estimations was used to refine the model applying the exactly same

  18. Model-data fusion across ecosystems: from multisite optimizations to global simulations

    Science.gov (United States)

    Kuppel, S.; Peylin, P.; Maignan, F.; Chevallier, F.; Kiely, G.; Montagnani, L.; Cescatti, A.

    2014-11-01

    This study uses a variational data assimilation framework to simultaneously constrain a global ecosystem model with eddy covariance measurements of daily net ecosystem exchange (NEE) and latent heat (LE) fluxes from a large number of sites grouped in seven plant functional types (PFTs). It is an attempt to bridge the gap between the numerous site-specific parameter optimization works found in the literature and the generic parameterization used by most land surface models within each PFT. The present multisite approach allows deriving PFT-generic sets of optimized parameters enhancing the agreement between measured and simulated fluxes at most of the sites considered, with performances often comparable to those of the corresponding site-specific optimizations. Besides reducing the PFT-averaged model-data root-mean-square difference (RMSD) and the associated daily output uncertainty, the optimization improves the simulated CO2 balance at tropical and temperate forests sites. The major site-level NEE adjustments at the seasonal scale are reduced amplitude in C3 grasslands and boreal forests, increased seasonality in temperate evergreen forests, and better model-data phasing in temperate deciduous broadleaf forests. Conversely, the poorer performances in tropical evergreen broadleaf forests points to deficiencies regarding the modelling of phenology and soil water stress for this PFT. An evaluation with data-oriented estimates of photosynthesis (GPP - gross primary productivity) and ecosystem respiration (Reco) rates indicates distinctively improved simulations of both gross fluxes. The multisite parameter sets are then tested against CO2 concentrations measured at 53 locations around the globe, showing significant adjustments of the modelled seasonality of atmospheric CO2 concentration, whose relevance seems PFT-dependent, along with an improved interannual variability. Lastly, a global-scale evaluation with remote sensing NDVI (normalized difference vegetation index

  19. Representation of physiological drought at ecosystem level based on model and eddy covariance measurements

    Science.gov (United States)

    Zhang, Y.; Novick, K. A.; Song, C.; Zhang, Q.; Hwang, T.

    2017-12-01

    Drought and heat waves are expected to increase both in frequency and amplitude, exhibiting a major disturbance to global carbon and water cycles under future climate change. However, how these climate anomalies translate into physiological drought, or ecosystem moisture stress are still not clear, especially under the co-limitations from soil moisture supply and atmospheric demand for water. In this study, we characterized the ecosystem-level moisture stress in a deciduous forest in the southeastern United States using the Coupled Carbon and Water (CCW) model and in-situ eddy covariance measurements. Physiologically, vapor pressure deficit (VPD) as an atmospheric water demand indicator largely controls the openness of leaf stomata, and regulates atmospheric carbon and water exchanges during periods of hydrological stress. Here, we tested three forms of VPD-related moisture scalars, i.e. exponent (K2), hyperbola (K3), and logarithm (K4) to quantify the sensitivity of light-use efficiency to VPD along different soil moisture conditions. The sensitivity indicators of K values were calibrated based on the framework of CCW using Monte Carlo simulations on the hourly scale, in which VPD and soil water content (SWC) are largely decoupled and the full carbon and water exchanging information are held. We found that three K values show similar performances in the predictions of ecosystem-level photosynthesis and transpiration after calibration. However, all K values show consistent gradient changes along SWC, indicating that this deciduous forest is less responsive to VPD as soil moisture decreases, a phenomena of isohydricity in which plants tend to close stomata to keep the leaf water potential constant and reduce the risk of hydraulic failure. Our study suggests that accounting for such isohydric information, or spectrum of moisture stress along different soil moisture conditions in models can significantly improve our ability to predict ecosystem responses to future

  20. The Limits of Acclimation of land plants in a Terrestrial Ecosystems Model

    Science.gov (United States)

    Kothavala, Zavareh

    2014-05-01

    In this study, we examine the role of the terrestrial carbon cycle and the ability of different plant types to acclimate to a changing climate at the centennial scale using a global ecosystems model with updated biogeochemical processes related to moisture, carbon, and nitrogen. Elevated level of atmospheric carbon dioxide (CO2) increases CO2 fertilization, resulting in more CO2 uptake by vegetation, whereas the concomitant warming increases autotrophic and heterotrophic respiration, releasing CO2 to the atmosphere. Additionally, warming will enhance photosynthesis if current temperatures are below the optimal temperature for plant growth, while it will reduce photosynthesis if current temperatures are above the optimal temperature for plant growth. We present a series of ensemble simulations to evaluate the ability of plants to acclimate to changing conditions over the last century and how this affects the terrestrial carbon sink. A set of experiments related to (a) the varying relationship between CO2 fertilization and the half saturation constant, (b) the factors related to gross primary productivity and maintenance respiration, and (c) the variables related to heterotrophic respiration, were conducted with thirteen plant functional types. The experiments were performed using the Terrestrial Ecosystem Model (TEM) with a present-day vegetation distribution without the effects of natural or human disturbance, and a closed Nitrogen cycle, at a half-degree resolution over the globe. The experiment design consisted of eight scenarios that are consistent with past and future ecosystem conditions, presented in other scientific studies. The significance of model trends related to runoff, soil moisture, soil carbon, Net Primary Productivity (NPP), crop yield, and Net Ecosystem Productivity (NEP) for different seasons, as well as surface temperature, precipitation, vapor pressure, and photosynthetically active radiation are analyzed for various ecosystems at the global

  1. The use of spatial empirical models to estimate soil erosion in arid ecosystems.

    Science.gov (United States)

    Abdullah, Meshal; Feagin, Rusty; Musawi, Layla

    2017-02-01

    The central objective of this project was to utilize geographical information systems and remote sensing to compare soil erosion models, including Modified Pacific South-west Inter Agency Committee (MPSIAC), Erosion Potential Method (EPM), and Revised Universal Soil Loss Equation (RUSLE), and to determine their applicability for arid regions such as Kuwait. The northern portion of Umm Nigga, containing both coastal and desert ecosystems, falls within the boundaries of the de-militarized zone (DMZ) adjacent to Iraq and has been fenced off to restrict public access since 1994. Results showed that the MPSIAC and EPM models were similar in spatial distribution of erosion, though the MPSIAC had a more realistic spatial distribution of erosion and presented finer level details. The RUSLE presented unrealistic results. We then predicted the amount of soil loss between coastal and desert areas and fenced and unfenced sites for each model. In the MPSIAC and EPM models, soil loss was different between fenced and unfenced sites at the desert areas, which was higher at the unfenced due to the low vegetation cover. The overall results implied that vegetation cover played an important role in reducing soil erosion and that fencing is much more important in the desert ecosystems to protect against human activities such as overgrazing. We conclude that the MPSIAC model is best for predicting soil erosion for arid regions such as Kuwait. We also recommend the integration of field-based experiments with lab-based spatial analysis and modeling in future research.

  2. An Integrated Model for Identifying Linkages Between the Management of Fuel Treatments, Fire and Ecosystem Services

    Science.gov (United States)

    Bart, R. R.; Anderson, S.; Moritz, M.; Plantinga, A.; Tague, C.

    2015-12-01

    Vegetation fuel treatments (e.g. thinning, prescribed burning) are a frequent tool for managing fire-prone landscapes. However, predicting how fuel treatments may affect future wildfire risk and associated ecosystem services, such as forest water availability and streamflow, remains a challenge. This challenge is in part due to the large range of conditions under which fuel treatments may be implemented, as response is likely to vary with species type, rates of vegetation regrowth, meteorological conditions and physiographic properties of the treated site. It is also due to insufficient understanding of how social factors such as political pressure, public demands and economic constraints affect fuel management decisions. To examine the feedbacks between ecological and social dimensions of fuel treatments, we present an integrated model that links a biophysical model that simulates vegetation and hydrology (RHESSys), a fire spread model (WMFire) and an empirical fuel treatment model that accounts for agency decision-making. We use this model to investigate how management decisions affect landscape fuel loads, which in turn affect fire severity and ecosystem services, which feedback to management decisions on fuel treatments. We hypothesize that this latter effect will be driven by salience theory, which predicts that fuel treatments are more likely to occur following major wildfire events. The integrated model provides a flexible framework for answering novel questions about fuel treatments that span social and ecological domains, areas that have previously been treated separately.

  3. Coupled hydrological, ecological, decision and economic models for monetary valuation of riparian ecosystem services

    Science.gov (United States)

    Goodrich, D. C.; Brookshire, D.; Broadbent, C.; Dixon, M. D.; Brand, L. A.; Thacher, J.; Benedict, K. K.; Lansey, K. E.; Stromberg, J. C.; Stewart, S.; McIntosh, M.

    2011-12-01

    Water is a critical component for sustaining both natural and human systems. Yet the value of water for sustaining ecosystem services is not well quantified in monetary terms. Ideally decisions involving water resource management would include an apples-to-apples comparison of the costs and benefits in dollars of both market and non-market goods and services - human and ecosystem. To quantify the value of non-market ecosystem services, scientifically defensible relationships must be developed that link the effect of a decision (e.g. human growth) to the change in ecosystem attributes from current conditions. It is this linkage that requires the "poly-disciplinary" coupling of knowledge and models from the behavioral, physical, and ecological sciences. In our experience another key component of making this successful linkage is development of a strong poly-disciplinary scientific team that can readily communicate complex disciplinary knowledge to non-specialists outside their own discipline. The time to build such a team that communicates well and has a strong sense of trust should not be underestimated. The research described in the presentation incorporated hydrologic, vegetation, avian, economic, and decision models into an integrated framework to determine the value of changes in ecological systems that result from changes in human water use. We developed a hydro-bio-economic framework for the San Pedro River Region in Arizona that considers groundwater, stream flow, and riparian vegetation, as well as abundance, diversity, and distribution of birds. In addition, we developed a similar framework for the Middle Rio Grande of New Mexico. There are six research components for this project: (1) decision support and scenario specification, (2) regional groundwater model, (3) the riparian vegetation model, (4) the avian model, (5) methods for displaying the information gradients in the valuation survey instruments (Choice Modeling and Contingent Valuation), and (6

  4. Radionuclide transfer in marine coastal ecosystems, a modelling study using metabolic processes and site data.

    Science.gov (United States)

    Konovalenko, L; Bradshaw, C; Kumblad, L; Kautsky, U

    2014-07-01

    This study implements new site-specific data and improved process-based transport model for 26 elements (Ac, Ag, Am, Ca, Cl, Cm, Cs, Ho, I, Nb, Ni, Np, Pa, Pb, Pd, Po, Pu, Ra, Se, Sm, Sn, Sr, Tc, Th, U, Zr), and validates model predictions with site measurements and literature data. The model was applied in the safety assessment of a planned nuclear waste repository in Forsmark, Öregrundsgrepen (Baltic Sea). Radionuclide transport models are central in radiological risk assessments to predict radionuclide concentrations in biota and doses to humans. Usually concentration ratios (CRs), the ratio of the measured radionuclide concentration in an organism to the concentration in water, drive such models. However, CRs vary with space and time and CR estimates for many organisms are lacking. In the model used in this study, radionuclides were assumed to follow the circulation of organic matter in the ecosystem and regulated by radionuclide-specific mechanisms and metabolic rates of the organisms. Most input parameters were represented by log-normally distributed probability density functions (PDFs) to account for parameter uncertainty. Generally, modelled CRs for grazers, benthos, zooplankton and fish for the 26 elements were in good agreement with site-specific measurements. The uncertainty was reduced when the model was parameterized with site data, and modelled CRs were most similar to measured values for particle reactive elements and for primary consumers. This study clearly demonstrated that it is necessary to validate models with more than just a few elements (e.g. Cs, Sr) in order to make them robust. The use of PDFs as input parameters, rather than averages or best estimates, enabled the estimation of the probable range of modelled CR values for the organism groups, an improvement over models that only estimate means. Using a mechanistic model that is constrained by ecological processes enables (i) the evaluation of the relative importance of food and water

  5. Radionuclide transfer in marine coastal ecosystems, a modelling study using metabolic processes and site data

    International Nuclear Information System (INIS)

    Konovalenko, L.; Bradshaw, C.; Kumblad, L.; Kautsky, U.

    2014-01-01

    This study implements new site-specific data and improved process-based transport model for 26 elements (Ac, Ag, Am, Ca, Cl, Cm, Cs, Ho, I, Nb, Ni, Np, Pa, Pb, Pd, Po, Pu, Ra, Se, Sm, Sn, Sr, Tc, Th, U, Zr), and validates model predictions with site measurements and literature data. The model was applied in the safety assessment of a planned nuclear waste repository in Forsmark, Öregrundsgrepen (Baltic Sea). Radionuclide transport models are central in radiological risk assessments to predict radionuclide concentrations in biota and doses to humans. Usually concentration ratios (CRs), the ratio of the measured radionuclide concentration in an organism to the concentration in water, drive such models. However, CRs vary with space and time and CR estimates for many organisms are lacking. In the model used in this study, radionuclides were assumed to follow the circulation of organic matter in the ecosystem and regulated by radionuclide-specific mechanisms and metabolic rates of the organisms. Most input parameters were represented by log-normally distributed probability density functions (PDFs) to account for parameter uncertainty. Generally, modelled CRs for grazers, benthos, zooplankton and fish for the 26 elements were in good agreement with site-specific measurements. The uncertainty was reduced when the model was parameterized with site data, and modelled CRs were most similar to measured values for particle reactive elements and for primary consumers. This study clearly demonstrated that it is necessary to validate models with more than just a few elements (e.g. Cs, Sr) in order to make them robust. The use of PDFs as input parameters, rather than averages or best estimates, enabled the estimation of the probable range of modelled CR values for the organism groups, an improvement over models that only estimate means. Using a mechanistic model that is constrained by ecological processes enables (i) the evaluation of the relative importance of food and water

  6. Looking Past Primary Productivity: Benchmarking System Processes that Drive Ecosystem Level Responses in Models

    Science.gov (United States)

    Cowdery, E.; Dietze, M.

    2017-12-01

    As atmospheric levels of carbon dioxide levels continue to increase, it is critical that terrestrial ecosystem models can accurately predict ecological responses to the changing environment. Current predictions of net primary productivity (NPP) in response to elevated atmospheric CO2 concentration are highly variable and contain a considerable amount of uncertainty. Benchmarking model predictions against data are necessary to assess their ability to replicate observed patterns, but also to identify and evaluate the assumptions causing inter-model differences. We have implemented a novel benchmarking workflow as part of the Predictive Ecosystem Analyzer (PEcAn) that is automated, repeatable, and generalized to incorporate different sites and ecological models. Building on the recent Free-Air CO2 Enrichment Model Data Synthesis (FACE-MDS) project, we used observational data from the FACE experiments to test this flexible, extensible benchmarking approach aimed at providing repeatable tests of model process representation that can be performed quickly and frequently. Model performance assessments are often limited to traditional residual error analysis; however, this can result in a loss of critical information. Models that fail tests of relative measures of fit may still perform well under measures of absolute fit and mathematical similarity. This implies that models that are discounted as poor predictors of ecological productivity may still be capturing important patterns. Conversely, models that have been found to be good predictors of productivity may be hiding error in their sub-process that result in the right answers for the wrong reasons. Our suite of tests have not only highlighted process based sources of uncertainty in model productivity calculations, they have also quantified the patterns and scale of this error. Combining these findings with PEcAn's model sensitivity analysis and variance decomposition strengthen our ability to identify which processes

  7. Changes in Nature's Balance Sheet: Model-based Estimates of Future Worldwide Ecosystem Services

    Directory of Open Access Journals (Sweden)

    Joseph Alcamo

    2005-12-01

    Full Text Available Four quantitative scenarios are presented that describe changes in worldwide ecosystem services up to 2050-2100. A set of soft-linked global models of human demography, economic development, climate, and biospheric processes are used to quantify these scenarios. The global demand for ecosystem services substantially increases up to 2050: cereal consumption by a factor of 1.5 to 1.7, fish consumption (up to the 2020s by a factor of 1.3 to 1.4, water withdrawals by a factor of 1.3 to 2.0, and biofuel production by a factor of 5.1 to 11.3. The ranges for these estimates reflect differences between the socio-economic assumptions of the scenarios. In all simulations, Sub-Saharan Africa continues to lag behind other parts of the world. Although the demand side of these scenarios presents an overall optimistic view of the future, the supply side is less optimistic: the risk of higher soil erosion (especially in Sub-Saharan Africa and lower water availability (especially in the Middle East could slow down an increase in food production. Meanwhile, increasing wastewater discharges during the same period, especially in Latin America (factor of 2 to 4 and Sub-Saharan Africa (factor of 3.6 to 5.6 could interfere with the delivery of freshwater services. Marine fisheries (despite the growth of aquaculture may not have the ecological capacity to provide for the increased global demand for fish. Our simulations also show an intensification of present tradeoffs between ecosystem services, e.g., expansion of agricultural land (between 2000 and 2050 may be one of the main causes of a 10%-20% loss of total current grassland and forest land and the ecosystem services associated with this land (e.g., genetic resources, wood production, habitat for terrestrial biota and fauna. The scenarios also show that certain hot-spot regions may experience especially rapid changes in ecosystem services: the central part of Africa, southern Asia, and the Middle East. In general

  8. Integration of research infrastructures and ecosystem models toward development of predictive ecology

    Science.gov (United States)

    Luo, Y.; Huang, Y.; Jiang, J.; MA, S.; Saruta, V.; Liang, G.; Hanson, P. J.; Ricciuto, D. M.; Milcu, A.; Roy, J.

    2017-12-01

    The past two decades have witnessed rapid development in sensor technology. Built upon the sensor development, large research infrastructure facilities, such as National Ecological Observatory Network (NEON) and FLUXNET, have been established. Through networking different kinds of sensors and other data collections at many locations all over the world, those facilities generate large volumes of ecological data every day. The big data from those facilities offer an unprecedented opportunity for advancing our understanding of ecological processes, educating teachers and students, supporting decision-making, and testing ecological theory. The big data from the major research infrastructure facilities also provides foundation for developing predictive ecology. Indeed, the capability to predict future changes in our living environment and natural resources is critical to decision making in a world where the past is no longer a clear guide to the future. We are living in a period marked by rapid climate change, profound alteration of biogeochemical cycles, unsustainable depletion of natural resources, and deterioration of air and water quality. Projecting changes in future ecosystem services to the society becomes essential not only for science but also for policy making. We will use this panel format to outline major opportunities and challenges in integrating research infrastructure and ecosystem models toward developing predictive ecology. Meanwhile, we will also show results from an interactive model-experiment System - Ecological Platform for Assimilating Data into models (EcoPAD) - that have been implemented at the Spruce and Peatland Responses Under Climatic and Environmental change (SPRUCE) experiment in Northern Minnesota and Montpellier Ecotron, France. EcoPAD is developed by integrating web technology, eco-informatics, data assimilation techniques, and ecosystem modeling. EcoPAD is designed to streamline data transfer seamlessly from research infrastructure

  9. Simulations of ecosystem hydrological processes using a unified multi-scale model

    Energy Technology Data Exchange (ETDEWEB)

    Yang, Xiaofan; Liu, Chongxuan; Fang, Yilin; Hinkle, Ross; Li, Hong-Yi; Bailey, Vanessa; Bond-Lamberty, Ben

    2015-01-01

    This paper presents a unified multi-scale model (UMSM) that we developed to simulate hydrological processes in an ecosystem containing both surface water and groundwater. The UMSM approach modifies the Navier–Stokes equation by adding a Darcy force term to formulate a single set of equations to describe fluid momentum and uses a generalized equation to describe fluid mass balance. The advantage of the approach is that the single set of the equations can describe hydrological processes in both surface water and groundwater where different models are traditionally required to simulate fluid flow. This feature of the UMSM significantly facilitates modelling of hydrological processes in ecosystems, especially at locations where soil/sediment may be frequently inundated and drained in response to precipitation, regional hydrological and climate changes. In this paper, the UMSM was benchmarked using WASH123D, a model commonly used for simulating coupled surface water and groundwater flow. Disney Wilderness Preserve (DWP) site at the Kissimmee, Florida, where active field monitoring and measurements are ongoing to understand hydrological and biogeochemical processes, was then used as an example to illustrate the UMSM modelling approach. The simulations results demonstrated that the DWP site is subject to the frequent changes in soil saturation, the geometry and volume of surface water bodies, and groundwater and surface water exchange. All the hydrological phenomena in surface water and groundwater components including inundation and draining, river bank flow, groundwater table change, soil saturation, hydrological interactions between groundwater and surface water, and the migration of surface water and groundwater interfaces can be simultaneously simulated using the UMSM. Overall, the UMSM offers a cross-scale approach that is particularly suitable to simulate coupled surface and ground water flow in ecosystems with strong surface water and groundwater interactions.

  10. Modeling the impact of watershed management policies on marine ecosystem services with application to Hood Canal, WA, USA

    Science.gov (United States)

    Sutherland, D. A.; Kim, C.; Marsik, M.; Spiridonov, G.; Toft, J.; Ruckelshaus, M.; Guerry, A.; Plummer, M.

    2011-12-01

    Humans obtain numerous benefits from marine ecosystems, including fish to eat; mitigation of storm damage; nutrient and water cycling and primary production; and cultural, aesthetic and recreational values. However, managing these benefits, or ecosystem services, in the marine world relies on an integrated approach that accounts for both marine and watershed activities. Here we present the results of a set of simple, physically-based, and spatially-explicit models that quantify the effects of terrestrial activities on marine ecosystem services. Specifically, we model the circulation and water quality of Hood Canal, WA, USA, a fjord system in Puget Sound where multiple human uses of the nearshore ecosystem (e.g., shellfish aquaculture, recreational Dungeness crab and shellfish harvest) can be compromised when water quality is poor (e.g., hypoxia, excessive non-point source pollution). Linked to the estuarine water quality model is a terrestrial hydrology model that simulates streamflow and nutrient loading, so land cover and climate changes in watersheds can be reflected in the marine environment. In addition, a shellfish aquaculture model is linked to the water quality model to test the sensitivity of the ecosystem service and its value to both terrestrial and marine activities. The modeling framework is general and will be publicly available, allowing easy comparisons of watershed impacts on marine ecosystem services across multiple scales and regions.

  11. A microclimate model to investigate greenhouse warming of a sub- Alpine ecosystem

    International Nuclear Information System (INIS)

    Shen, K.P.

    1992-01-01

    Increasing concentrations of greenhouse gases in the earth's atmosphere are expected to result in a global warming of several degrees Celsius in the coming decades. This warming will have far-reaching impacts on the biosphere, and while General Circulation Models (GCMs) try to predict the magnitude and scope of the warming, there is little information regarding the potential impacts of greenhouse warming on natural systems. An experiment currently under way in a meadow in the Colorado Rocky Mountains attempts to investigate the many consequences of greenhouse warming for soil ecosystems. A mathematical model of the soil microclimate was developed to simulate the soil temperature and moisture content of the meadow. The model simulates both treatment and control scenarios so as to investigate the potential effects of warming. Results of model simulation studies indicate warmer, drier soils under treatment conditions, with the greatest temperature effects of warming occurring at night. These results could have several implications regarding the dynamics of the ecosystem, and future model studies will investigate these connections

  12. Assessing biomass of diverse coastal marsh ecosystems using statistical and machine learning models

    Science.gov (United States)

    Mo, Yu; Kearney, Michael S.; Riter, J. C. Alexis; Zhao, Feng; Tilley, David R.

    2018-06-01

    The importance and vulnerability of coastal marshes necessitate effective ways to closely monitor them. Optical remote sensing is a powerful tool for this task, yet its application to diverse coastal marsh ecosystems consisting of different marsh types is limited. This study samples spectral and biophysical data from freshwater, intermediate, brackish, and saline marshes in Louisiana, and develops statistical and machine learning models to assess the marshes' biomass with combined ground, airborne, and spaceborne remote sensing data. It is found that linear models derived from NDVI and EVI are most favorable for assessing Leaf Area Index (LAI) using multispectral data (R2 = 0.7 and 0.67, respectively), and the random forest models are most useful in retrieving LAI and Aboveground Green Biomass (AGB) using hyperspectral data (R2 = 0.91 and 0.84, respectively). It is also found that marsh type and plant species significantly impact the linear model development (P biomass of Louisiana's coastal marshes using various optical remote sensing techniques, and highlights the impacts of the marshes' species composition on the model development and the sensors' spatial resolution on biomass mapping, thereby providing useful tools for monitoring the biomass of coastal marshes in Louisiana and diverse coastal marsh ecosystems elsewhere.

  13. The disruptive impact of digitalization on the automotive ecosystem: a research agenda on business models, platforms and consumer issues

    OpenAIRE

    Athanasopoulou, A.; Bouwman, W.A.G.A.; Nikayin, F.A.; de Reuver, G.A.

    2016-01-01

    Digital technologies are transforming the automotive industry, and disrupting traditional business models based on ownership of cars. With the emergence of connected cars, mobility services and servitization, questions arise on how these enabling technologies affect the ecosystem. In this paper, we propose a research agenda for the digitalized automotive ecosystem. In this research agenda we raise research questions on the impacts of digitalization on business models (i.e. how to move from tr...

  14. Collaborative Development Planning Model of Supporting Product in Platform Innovation Ecosystem

    Directory of Open Access Journals (Sweden)

    Wei Zhang

    2014-01-01

    Full Text Available In order to improve the market value of the product, the platform enterprise often participates in the development process of supporting product of emerging industry’s platform innovation ecosystem. This paper puts forward a revenue sharing contract between the platform company and the supporting company by creating a collaborative development model of the supporting product in the ecosystem, and this paper studies the platform enterprise investment resource property's (complementary or substitution impact on the supporting enterprise R&D efforts and the revenue sharing factor and analyzes collaborative development mechanism of supporting product of emerging industry platform innovation ecosystem. The research indicates that when platform enterprise and supporting enterprise's resources are complementary, the supporting enterprise R&D effort level and revenue sharing coefficient increase as the platform company’s investment increases. When platform enterprise and supporting enterprise's resources are substitutive, the supporting enterprise’s R&D effort level and revenue sharing coefficient decrease as the platform company’s investment increases.

  15. Modelling surface energy fluxes over a Dehesa ecosystem using a two-source energy balance model

    Science.gov (United States)

    The Dehesa is the most widespread agroforestry land-use system in Europe, covering more than 3 million hectares in the Iberian Peninsula and Greece (Grove and Rackham, 2001; Papanastasis, 2004). It is an agro-silvo-pastural ecosystem consisting of widely-spaced oak trees (mostly Quercus ilex L.), co...

  16. A protocol for the intercomparison of marine fishery and ecosystem models: Fish-MIP v1.0

    Directory of Open Access Journals (Sweden)

    D. P. Tittensor

    2018-04-01

    Full Text Available Model intercomparison studies in the climate and Earth sciences communities have been crucial to building credibility and coherence for future projections. They have quantified variability among models, spurred model development, contrasted within- and among-model uncertainty, assessed model fits to historical data, and provided ensemble projections of future change under specified scenarios. Given the speed and magnitude of anthropogenic change in the marine environment and the consequent effects on food security, biodiversity, marine industries, and society, the time is ripe for similar comparisons among models of fisheries and marine ecosystems. Here, we describe the Fisheries and Marine Ecosystem Model Intercomparison Project protocol version 1.0 (Fish-MIP v1.0, part of the Inter-Sectoral Impact Model Intercomparison Project (ISIMIP, which is a cross-sectoral network of climate impact modellers. Given the complexity of the marine ecosystem, this class of models has substantial heterogeneity of purpose, scope, theoretical underpinning, processes considered, parameterizations, resolution (grain size, and spatial extent. This heterogeneity reflects the lack of a unified understanding of the marine ecosystem and implies that the assemblage of all models is more likely to include a greater number of relevant processes than any single model. The current Fish-MIP protocol is designed to allow these heterogeneous models to be forced with common Earth System Model (ESM Coupled Model Intercomparison Project Phase 5 (CMIP5 outputs under prescribed scenarios for historic (from the 1950s and future (to 2100 time periods; it will be adapted to CMIP phase 6 (CMIP6 in future iterations. It also describes a standardized set of outputs for each participating Fish-MIP model to produce. This enables the broad characterization of differences between and uncertainties within models and projections when assessing climate and fisheries impacts on marine ecosystems

  17. A protocol for the intercomparison of marine fishery and ecosystem models: Fish-MIP v1.0

    Science.gov (United States)

    Tittensor, Derek P.; Eddy, Tyler D.; Lotze, Heike K.; Galbraith, Eric D.; Cheung, William; Barange, Manuel; Blanchard, Julia L.; Bopp, Laurent; Bryndum-Buchholz, Andrea; Büchner, Matthias; Bulman, Catherine; Carozza, David A.; Christensen, Villy; Coll, Marta; Dunne, John P.; Fernandes, Jose A.; Fulton, Elizabeth A.; Hobday, Alistair J.; Huber, Veronika; Jennings, Simon; Jones, Miranda; Lehodey, Patrick; Link, Jason S.; Mackinson, Steve; Maury, Olivier; Niiranen, Susa; Oliveros-Ramos, Ricardo; Roy, Tilla; Schewe, Jacob; Shin, Yunne-Jai; Silva, Tiago; Stock, Charles A.; Steenbeek, Jeroen; Underwood, Philip J.; Volkholz, Jan; Watson, James R.; Walker, Nicola D.

    2018-04-01

    Model intercomparison studies in the climate and Earth sciences communities have been crucial to building credibility and coherence for future projections. They have quantified variability among models, spurred model development, contrasted within- and among-model uncertainty, assessed model fits to historical data, and provided ensemble projections of future change under specified scenarios. Given the speed and magnitude of anthropogenic change in the marine environment and the consequent effects on food security, biodiversity, marine industries, and society, the time is ripe for similar comparisons among models of fisheries and marine ecosystems. Here, we describe the Fisheries and Marine Ecosystem Model Intercomparison Project protocol version 1.0 (Fish-MIP v1.0), part of the Inter-Sectoral Impact Model Intercomparison Project (ISIMIP), which is a cross-sectoral network of climate impact modellers. Given the complexity of the marine ecosystem, this class of models has substantial heterogeneity of purpose, scope, theoretical underpinning, processes considered, parameterizations, resolution (grain size), and spatial extent. This heterogeneity reflects the lack of a unified understanding of the marine ecosystem and implies that the assemblage of all models is more likely to include a greater number of relevant processes than any single model. The current Fish-MIP protocol is designed to allow these heterogeneous models to be forced with common Earth System Model (ESM) Coupled Model Intercomparison Project Phase 5 (CMIP5) outputs under prescribed scenarios for historic (from the 1950s) and future (to 2100) time periods; it will be adapted to CMIP phase 6 (CMIP6) in future iterations. It also describes a standardized set of outputs for each participating Fish-MIP model to produce. This enables the broad characterization of differences between and uncertainties within models and projections when assessing climate and fisheries impacts on marine ecosystems and the

  18. Empirical Succession Mapping and Data Assimilation to Constrain Demographic Processes in an Ecosystem Model

    Science.gov (United States)

    Kelly, R.; Andrews, T.; Dietze, M.

    2015-12-01

    Shifts in ecological communities in response to environmental change have implications for biodiversity, ecosystem function, and feedbacks to global climate change. Community composition is fundamentally the product of demography, but demographic processes are simplified or missing altogether in many ecosystem, Earth system, and species distribution models. This limitation arises in part because demographic data are noisy and difficult to synthesize. As a consequence, demographic processes are challenging to formulate in models in the first place, and to verify and constrain with data thereafter. Here, we used a novel analysis of the USFS Forest Inventory Analysis to improve the representation of demography in an ecosystem model. First, we created an Empirical Succession Mapping (ESM) based on ~1 million individual tree observations from the eastern U.S. to identify broad demographic patterns related to forest succession and disturbance. We used results from this analysis to guide reformulation of the Ecosystem Demography model (ED), an existing forest simulator with explicit tree demography. Results from the ESM reveal a coherent, cyclic pattern of change in temperate forest tree size and density over the eastern U.S. The ESM captures key ecological processes including succession, self-thinning, and gap-filling, and quantifies the typical trajectory of these processes as a function of tree size and stand density. Recruitment is most rapid in early-successional stands with low density and mean diameter, but slows as stand density increases; mean diameter increases until thinning promotes recruitment of small-diameter trees. Strikingly, the upper bound of size-density space that emerges in the ESM conforms closely to the self-thinning power law often observed in ecology. The ED model obeys this same overall size-density boundary, but overestimates plot-level growth, mortality, and fecundity rates, leading to unrealistic emergent demographic patterns. In particular

  19. Modeling and validating tritium transfer in a grassland ecosystem in response to {sup 3}H releases

    Energy Technology Data Exchange (ETDEWEB)

    Le Dizes, S.; Maro, D.; Rozet, M.; Hebert, D.; Solier, L.; Nicoulaud, V. [Institut de radioportection et de surete nucleaire - IRSN (France); Vermorel, F.; Aulagnier, C. [Electricite de France - EDF (France)

    2014-07-01

    Tritium ({sup 3}H) is a major radionuclide released in several forms (HTO, HT) by nuclear facilities under normal operating conditions. In terrestrial ecosystems, tritium can be found under two forms: tritium in tissue free water (TFWT) following absorption of tritiated water by leaves or roots and Organically Bound Tritium (OBT) resulting from TFWT incorporation by the plant organic matter during photosynthesis. In order to study transfers of tritium from atmospheric releases to terrestrial ecosystem such as grasslands, an in-situ laboratory has been set up by IRSN on a ryegrass field plot located 2 km downwind the AREVA NC La Hague nuclear reprocessing plant (North-West of France), as was done in the past for the assessment of transfer of radiocarbon in grasslands. The objectives of this experimental field are: (i) to better understand the OBT formation in plant by photosynthesis, (ii) to evaluate transfer processes of tritium in several forms (HT, HTO) from the atmosphere (air and rainwater) to grass and soil, (iii) to develop a modeling allowing to reproduce the dynamic response of the ecosystem to tritium atmospheric releases depending of variable environmental conditions. For this purpose, tritium activity measurements will be carried out in grass (monthly measurements of HTO, OBT), in air, rainwater, soil (daily measurements of HT, HTO) and CO{sub 2}, H{sub 2}O fluxes between soil and air compartments will be carried out. Then, the TOCATTA-c model previously developed to simulate {sup 14}C transfers to pasture on a hourly time-step basis will be adapted to take account for processes specific to tritium. The model will be tested by a comparison between simulated results and measurements. The objectives of this presentation are (1) to present the organization of the experimental design of the VATO study (Validation of TOCATTA) dedicated to transfers of tritium in a grassland ecosystem, (2) to document the major assumptions, conceptual modelling and

  20. Modelling predation by transient leopard seals for an ecosystem-based management of Southern Ocean fisheries

    Science.gov (United States)

    Forcada, J.; Royle, J. Andrew; Staniland, I.J.

    2009-01-01

    Correctly quantifying the impacts of rare apex marine predators is essential to ecosystem-based approaches to fisheries management, where harvesting must be sustainable for targeted species and their dependent predators. This requires modelling the uncertainty in such processes as predator life history, seasonal abundance and movement, size-based predation, energetic requirements, and prey vulnerability. We combined these uncertainties to evaluate the predatory impact of transient leopard seals on a community of mesopredators (seals and penguins) and their prey at South Georgia, and assess the implications for an ecosystem-based management. The mesopredators are highly dependent on Antarctic krill and icefish, which are targeted by regional fisheries. We used a state-space formulation to combine (1) a mark-recapture open-population model and individual identification data to assess seasonally variable leopard seal arrival and departure dates, numbers, and residency times; (2) a size-based bioenergetic model; and (3) a size-based prey choice model from a diet analysis. Our models indicated that prey choice and consumption reflected seasonal changes in leopard seal population size and structure, size-selective predation and prey vulnerability. A population of 104 (90?125) leopard seals, of which 64% were juveniles, consumed less than 2% of the Antarctic fur seal pup production of the area (50% of total ingested energy, IE), but ca. 12?16% of the local gentoo penguin population (20% IE). Antarctic krill (28% IE) were the only observed food of leopard seal pups and supplemented the diet of older individuals. Direct impacts on krill and fish were negligible, but the ?escapement? due to leopard seal predation on fur seal pups and penguins could be significant for the mackerel icefish fishery at South Georgia. These results suggest that: (1) rare apex predators like leopard seals may control, and may depend on, populations of mesopredators dependent on prey species

  1. Modelling accumulation of radionuclides in terrestrial ecosystems originating from a long-term groundwater contamination

    Energy Technology Data Exchange (ETDEWEB)

    Gaerdenaes, Annemieke I. [Dept. of Soil and Environment, Swedish University of Agricultural Sciences (SLU), P.O. Box 7001, 750 07 Uppsala (Sweden); Eckersten, Henrik [Dept. of Ecology and Crop Production, SLU, P.O. Box 7042, 750 07 Uppsala (Sweden); Reinlert, Andre [Dept. of Physical Geography and Ecosystems Analysis, Lund University, 223 62 Lund (Sweden); MMT, Sven Kaellfelts Gata 11 SE 426 71 Vaestra Froelunda (Sweden); Gustafsson, David; Jansson, Per-Erik [Dept. Land and Water Resources, KTH, SE 100 44, Stockholm (Sweden); Ekstroem, Per-Anders [Facilia AB, Gustavlundsvaegen 151A, 167 51 Bromma (Sweden); Greger, Maria [Dept. of Ecology, Environment and Plant Sciences, Stockholm University, 106 91 Stockholm (Sweden)

    2014-07-01

    This study was conducted as part of the risk assessment of final deposits of nuclear fuel waste. The overall objective is to assess the possible accumulation of radionuclides in terrestrial ecosystems after an eventual long-term groundwater contamination. The specific objectives are to assess: i) What proportion of the contamination will accumulate in the soil-plant-system? ii) Where in the soil-plant- system will it accumulate? iii) Which ecosystem characteristics and radionuclides properties are important for the accumulation? and iv) Under which circumstances do losses from the ecosystems occur? We developed the dynamic model Tracey (Gaerdenaes et al. 2009) describing cycling of radionuclides in terrestrial ecosystems with high temporal resolution (1 day). The model is a multi-compartmental model in which fluxes and storage of radionuclides are described for different plant parts and soil pools in each of the 10 soil layers. The radionuclide fluxes are driven either by water or carbon fluxes. The water and the carbon fluxes are simulated with the dynamic, bio-geophysical Coup Model (Jansson and Karlberg, 2004). Tracey includes two root uptake approaches of radionuclides; (i) passive uptake driven by root water uptake and (ii) active uptake driven by plant growth. A linear approach describes the adsorption of radionuclides to soil particles and organic matter. Tracey was applied on two ecosystems with contrasting hydrology, the mixed Pinus-Picea forests found in the dry, elevated areas and the Alnus forests found in the wet, low-land areas of Uppland in central east Sweden. Different varieties of the two forest types were created by varying the root depth and radiation use efficiency. The climate was cold-temperate and based on 30-year daily weather data from Uppsala. The assumed groundwater contamination was close to 1 mg of an unspecified radionuclide per m2 and year. This load corresponds to 1 Bq per m{sup 2} and year of {sup 238}U, a common long

  2. Ecosystem effects of environmental flows: Modelling and experimental floods in a dryland river

    Science.gov (United States)

    Shafroth, P.B.; Wilcox, A.C.; Lytle, D.A.; Hickey, J.T.; Andersen, D.C.; Beauchamp, Vanessa B.; Hautzinger, A.; McMullen, L.E.; Warner, A.

    2010-01-01

    Successful environmental flow prescriptions require an accurate understanding of the linkages among flow events, geomorphic processes and biotic responses. We describe models and results from experimental flow releases associated with an environmental flow program on the Bill Williams River (BWR), Arizona, in arid to semiarid western U.S.A. Two general approaches for improving knowledge and predictions of ecological responses to environmental flows are: (1) coupling physical system models to ecological responses and (2) clarifying empirical relationships between flow and ecological responses through implementation and monitoring of experimental flow releases. We modelled the BWR physical system using: (1) a reservoir operations model to simulate reservoir releases and reservoir water levels and estimate flow through the river system under a range of scenarios, (2) one- and two-dimensional river hydraulics models to estimate stage-discharge relationships at the whole-river and local scales, respectively, and (3) a groundwater model to estimate surface- and groundwater interactions in a large, alluvial valley on the BWR where surface flow is frequently absent. An example of a coupled, hydrology-ecology model is the Ecosystems Function Model, which we used to link a one-dimensional hydraulic model with riparian tree seedling establishment requirements to produce spatially explicit predictions of seedling recruitment locations in a Geographic Information System. We also quantified the effects of small experimental floods on the differential mortality of native and exotic riparian trees, on beaver dam integrity and distribution, and on the dynamics of differentially flow-adapted benthic macroinvertebrate groups. Results of model applications and experimental flow releases are contributing to adaptive flow management on the BWR and to the development of regional environmental flow standards. General themes that emerged from our work include the importance of response

  3. San Francisco Bay nutrients and plankton dynamics as simulated by a coupled hydrodynamic-ecosystem model

    Science.gov (United States)

    Liu, Qianqian; Chai, Fei; Dugdale, Richard; Chao, Yi; Xue, Huijie; Rao, Shivanesh; Wilkerson, Frances; Farrara, John; Zhang, Hongchun; Wang, Zhengui; Zhang, Yinglong

    2018-06-01

    An open source coupled physical-biogeochemical model is developed for San Francisco Bay (SFB) to study nutrient cycling and plankton dynamics as well as to assist ecosystem based management and risk assessment. The biogeochemical model in this study is based on the Carbon, Silicate and Nitrogen Ecosystem (CoSiNE) model, and coupled to the unstructured grid, Semi-Implicit Cross-scale Hydroscience Integrated System Model (SCHISM). The SCHISM-CoSiNE model reproduces the spatial and temporal variability in nutrients and plankton biomass, and its physical and biogeochemical performance is successfully tested using comparisons with shipboard and fixed station observations. The biogeochemical characteristics of the SFB during wet and dry years are investigated by changing the input of the major rivers. River discharges from the Sacramento and San Joaquin Rivers affect the phytoplankton biomass in North SFB through both advection and dilution of nutrient (including ammonium, NH4) concentrations in the river. The reduction in residence time caused by increased inflows can result in decreased biomass accumulation, while the corresponding reduction in NH4 concentration favors the growth of biomass. In addition, the model is used to make a series of sensitivity experiments to examine the response of SFB to changes in 1) nutrient loading from rivers and wastewater treatment plants (WWTPs), 2) a parameter (ψ) defining NH4 inhibition of nitrate (NO3) uptake by phytoplankton, 3) bottom grazing and 4) suspended sediment concentration. The model results show that changes in NH4 input from rivers or WWTPs affect the likelihood of phytoplankton blooms via NH4 inhibition and that the choice of ψ is critical. Bottom grazing simulated here as increased plankton mortality demonstrates the potential for bivalve reduction of chlorophyll biomass and the need to include bivalve grazing in future models. Furthermore, the model demonstrates the need to include sediments and their contribution

  4. A Model for Calculated Privacy and Trust in pHealth Ecosystems.

    Science.gov (United States)

    Ruotsalainen, Pekka; Blobel, Bernd

    2018-01-01

    A pHealth ecosystem is a community of service users and providers. It is also a dynamic socio-technical system. One of its main goals is to help users to maintain their personal health status. Another goal is to give economic benefit to stakeholders which use personal health information existing in the ecosystem. In pHealth ecosystems, a huge amount of health related data is collected and used by service providers such as data extracted from the regulated health record and information related to personal characteristics, genetics, lifestyle and environment. In pHealth ecosystems, there are different kinds of service providers such as regulated health care service providers, unregulated health service providers, ICT service providers, researchers and industrial organizations. This fact together with the multidimensional personal health data used raises serious privacy concerns. Privacy is a necessary enabler for successful pHealth, but it is also an elastic concept without any universally agreed definition. Regardless of what kind of privacy model is used in dynamic socio-technical systems, it is difficult for a service user to know the privacy level of services in real life situations. As privacy and trust are interrelated concepts, the authors have developed a hybrid solution where knowledge got from regulatory privacy requirements and publicly available privacy related documents is used for calculation of service providers' specific initial privacy value. This value is then used as an estimate for the initial trust score. In this solution, total trust score is a combination of recommended trust, proposed trust and initial trust. Initial privacy level is a weighted arithmetic mean of knowledge and user selected weights. The total trust score for any service provider in the ecosystem can be calculated deploying either a beta trust model or the Fuzzy trust calculation method. The prosed solution is easy to use and to understand, and it can be also automated. It is

  5. Heterologous expression of Anabaena PCC 7120 all3940 (a Dps family gene) protects Escherichia coli from nutrient limitation and abiotic stresses

    International Nuclear Information System (INIS)

    Narayan, Om Prakash; Kumari, Nidhi; Rai, Lal Chand

    2010-01-01

    This study presents first hand data on the cloning and heterologous expression of Anabaena PCC 7120 all3940 (a dps family gene) in combating nutrients limitation and multiple abiotic stresses. The Escherichia coli transformed with pGEX-5X-2-all3940 construct when subjected to iron, carbon, nitrogen, phosphorus limitation and carbofuron, copper, UV-B, heat, salt and cadmium stress registered significant increase in growth over the cells transformed with empty vector under iron (0%), carbon (0.05%), nitrogen (3.7 mM) and phosphorus (2 mM) limitation and carbofuron (0.025 mg ml -1 ), CuCl 2 (1 mM), UV-B (10 min), heat (47 o C), NaCl (6% w/v) and CdCl 2 (4 mM) stress. Enhanced expression of all3940 gene measured by semi-quantitative RT-PCR at different time points under above mentioned treatments clearly demonstrates its role in tolerance against aforesaid abiotic stresses. This study opens the gate for developing transgenic cyanobacteria capable of growing successfully under above mentioned stresses.

  6. Screening California Current fishery management scenarios using the Atlantis end-to-end ecosystem model

    Science.gov (United States)

    Kaplan, Isaac C.; Horne, Peter J.; Levin, Phillip S.

    2012-09-01

    End-to-end marine ecosystem models link climate and oceanography to the food web and human activities. These models can be used as forecasting tools, to strategically evaluate management options and to support ecosystem-based management. Here we report the results of such forecasts in the California Current, using an Atlantis end-to-end model. We worked collaboratively with fishery managers at NOAA’s regional offices and staff at the National Marine Sanctuaries (NMS) to explore the impact of fishery policies on management objectives at different spatial scales, from single Marine Sanctuaries to the entire Northern California Current. In addition to examining Status Quo management, we explored the consequences of several gear switching and spatial management scenarios. Of the scenarios that involved large scale management changes, no single scenario maximized all performance metrics. Any policy choice would involve trade-offs between stakeholder groups and policy goals. For example, a coast-wide 25% gear shift from trawl to pot or longline appeared to be one possible compromise between an increase in spatial management (which sacrificed revenue) and scenarios such as the one consolidating bottom impacts to deeper areas (which did not perform substantially differently from Status Quo). Judged on a coast-wide scale, most of the scenarios that involved minor or local management changes (e.g. within Monterey Bay NMS only) yielded results similar to Status Quo. When impacts did occur in these cases, they often involved local interactions that were difficult to predict a priori based solely on fishing patterns. However, judged on the local scale, deviation from Status Quo did emerge, particularly for metrics related to stationary species or variables (i.e. habitat and local metrics of landed value or bycatch). We also found that isolated management actions within Monterey Bay NMS would cause local fishers to pay a cost for conservation, in terms of reductions in landed

  7. A climate sensitive model of carbon transfer through atmosphere, vegetation and soil in managed forest ecosystems

    Science.gov (United States)

    Loustau, D.; Moreaux, V.; Bosc, A.; Trichet, P.; Kumari, J.; Rabemanantsoa, T.; Balesdent, J.; Jolivet, C.; Medlyn, B. E.; Cavaignac, S.; Nguyen-The, N.

    2012-12-01

    For predicting the future of the forest carbon cycle in forest ecosystems, it is necessary to account for both the climate and management impacts. Climate effects are significant not only at a short time scale but also at the temporal horizon of a forest life cycle e.g. through shift in atmospheric CO2 concentration, temperature and precipitation regimes induced by the enhanced greenhouse effect. Intensification of forest management concerns an increasing fraction of temperate and tropical forests and untouched forests represents only one third of the present forest area. Predicting tools are therefore needed to project climate and management impacts over the forest life cycle and understand the consequence of management on the forest ecosystem carbon cycle. This communication summarizes the structure, main components and properties of a carbon transfer model that describes the processes controlling the carbon cycle of managed forest ecosystems. The model, GO+, links three main components, (i) a module describing the vegetation-atmosphere mass and energy exchanges in 3D, (ii) a plant growth module and a (iii) soil carbon dynamics module in a consistent carbon scheme of transfer from atmosphere back into the atmosphere. It was calibrated and evaluated using observed data collected on coniferous and broadleaved forest stands. The model predicts the soil, water and energy balance of entire rotations of managed stands from the plantation to the final cut and according to a range of management alternatives. It accounts for the main soil and vegetation management operations such as soil preparation, understorey removal, thinnings and clearcutting. Including the available knowledge on the climatic sensitivity of biophysical and biogeochemical processes involved in atmospheric exchanges and carbon cycle of forest ecosystems, GO+ can produce long-term backward or forward simulations of forest carbon and water cycles under a range of climate and management scenarios. This

  8. Ground-based grasslands data to support remote sensing and ecosystem modeling of terrestrial primary production

    Science.gov (United States)

    Olson, R. J.; Scurlock, J. M. O.; Turner, R. S.; Jennings, S. V.

    1995-01-01

    Estimating terrestrial net primary production (NPP) using remote-sensing tools and ecosystem models requires adequate ground-based measurements for calibration, parameterization, and validation. These data needs were strongly endorsed at a recent meeting of ecosystem modelers organized by the International Geosphere-Biosphere Program's (IGBP's) Data and Information System (DIS) and its Global Analysis, Interpretation, and Modelling (GAIM) Task Force. To meet these needs, a multinational, multiagency project is being coordinated by the IGBP DIS to compile existing NPP data from field sites and to regionalize NPP point estimates to various-sized grid cells. Progress at Oak Ridge National Laboratory (ORNL) on compiling NPP data for grasslands as part of the IGBP DIS data initiative is described. Site data and associated documentation from diverse field studies are being acquired for selected grasslands and are being reviewed for completeness, consistency, and adequacy of documentation, including a description of sampling methods. Data are being compiled in a database with spatial, temporal, and thematic characteristics relevant to remote sensing and global modeling. NPP data are available from the ORNL Distributed Active Archive Center (DAAC) for biogeochemical dynamics. The ORNL DAAC is part of the Earth Observing System Data and Information System, of the US National Aeronautics and Space Administration.

  9. Ground-based grasslands data to support remote sensing and ecosystem modeling of terrestrial primary production

    Energy Technology Data Exchange (ETDEWEB)

    Olson, R.J.; Turner, R.S. [Oak Ridge National Lab., TN (United States); Scurlock, J.M.O. [King`s College London, (England); Jennings, S.V. [Tennessee Univ., Knoxville, TN (United States)

    1995-12-31

    Estimating terrestrial net primary production (NPP) using remote- sensing tools and ecosystem models requires adequate ground-based measurements for calibration, parameterization, and validation. These data needs were strongly endorsed at a recent meeting of ecosystem modelers organized by the International Geosphere-Biosphere Programme`s (IGBP`s) Data and Information System (DIS) and its Global Analysis, Interpretation, and Modelling (GAIM) Task Force. To meet these needs, a multinational, multiagency project is being coordinated by the IGBP DIS to compile existing NPP data from field sites and to regionalize NPP point estimates to various-sized grid cells. Progress at Oak Ridge National Laboratory (ORNL) on compiling NPP data for grasslands as part of the IGBP DIS data initiative is described. Site data and associated documentation from diverse field studies are being acquired for selected grasslands and are being reviewed for completeness, consistency, and adequacy of documentation, including a description of sampling methods. Data are being compiled in a database with spatial, temporal, and thematic characteristics relevant to remote sensing and global modeling. NPP data are available from the ORNL Distributed Active Archive Center (DAAC) for biogeochemical dynamics. The ORNL DAAC is part of the Earth Observing System Data and Information System, of the US National Aeronautics and Space Administration.

  10. Fuzzy model for risk assessment of persistent organic pollutants in aquatic ecosystems

    International Nuclear Information System (INIS)

    Seguí, X.; Pujolasus, E.; Betrò, S.; Àgueda, A.; Casal, J.; Ocampo-Duque, W.; Rudolph, I.; Barra, R.; Páez, M.; Barón, E.; Eljarrat, E.; Barceló, D.; Darbra, R.M.

    2013-01-01

    We developed a model for evaluating the environmental risk of persistent organic pollutants (POPs) to aquatic organisms. The model is based on fuzzy theory and uses information provided by international experts through a questionnaire. It has been tested in two case studies for a particular type of POPs: brominated flame retardants (BFRs). The first case study is related to the EU-funded AQUATERRA project, with sampling campaigns carried out in two Ebro tributaries in Spain (the Cinca and Vero Rivers). The second one, named the BROMACUA project, assessed different aquatic ecosystems in Chile (San Vicente Bay) and Colombia (Santa Marta Marsh). In both projects, the BFRs under study were polybrominated diphenyl ethers (PBDEs) and hexabromocyclododecane (HBCD). However, the model can be extrapolated to other POPs and to different aquatic ecosystems to provide useful results for decision-makers. -- The risk of POPs for aquatic organisms was assessed at several sites around the world, using a fuzzy-based model to provide useful results for decision-makers

  11. Modelling Pseudocalanus elongatus stage-structured population dynamics embedded in a water column ecosystem model for the northern North Sea

    Science.gov (United States)

    Moll, Andreas; Stegert, Christoph

    2007-01-01

    This paper outlines an approach to couple a structured zooplankton population model with state variables for eggs, nauplii, two copepodites stages and adults adapted to Pseudocalanus elongatus into the complex marine ecosystem model ECOHAM2 with 13 state variables resolving the carbon and nitrogen cycle. Different temperature and food scenarios derived from laboratory culture studies were examined to improve the process parameterisation for copepod stage dependent development processes. To study annual cycles under realistic weather and hydrographic conditions, the coupled ecosystem-zooplankton model is applied to a water column in the northern North Sea. The main ecosystem state variables were validated against observed monthly mean values. Then vertical profiles of selected state variables were compared to the physical forcing to study differences between zooplankton as one biomass state variable or partitioned into five population state variables. Simulated generation times are more affected by temperature than food conditions except during the spring phytoplankton bloom. Up to six generations within the annual cycle can be discerned in the simulation.

  12. Harnessing Ecosystem Models and Multi-Criteria Decision Analysis for the Support of Forest Management

    Science.gov (United States)

    Wolfslehner, Bernhard; Seidl, Rupert

    2010-12-01

    The decision-making environment in forest management (FM) has changed drastically during the last decades. Forest management planning is facing increasing complexity due to a widening portfolio of forest goods and services, a societal demand for a rational, transparent decision process and rising uncertainties concerning future environmental conditions (e.g., climate change). Methodological responses to these challenges include an intensified use of ecosystem models to provide an enriched, quantitative information base for FM planning. Furthermore, multi-criteria methods are increasingly used to amalgamate information, preferences, expert judgments and value expressions, in support of the participatory and communicative dimensions of modern forestry. Although the potential of combining these two approaches has been demonstrated in a number of studies, methodological aspects in interfacing forest ecosystem models (FEM) and multi-criteria decision analysis (MCDA) are scarcely addressed explicitly. In this contribution we review the state of the art in FEM and MCDA in the context of FM planning and highlight some of the crucial issues when combining ecosystem and preference modeling. We discuss issues and requirements in selecting approaches suitable for supporting FM planning problems from the growing body of FEM and MCDA concepts. We furthermore identify two major challenges in a harmonized application of FEM-MCDA: (i) the design and implementation of an indicator-based analysis framework capturing ecological and social aspects and their interactions relevant for the decision process, and (ii) holistic information management that supports consistent use of different information sources, provides meta-information as well as information on uncertainties throughout the planning process.

  13. Diversity-interaction modeling: estimating contributions of species identities and interactions to ecosystem function

    DEFF Research Database (Denmark)

    Kirwan, L; Connolly, J; Finn, J A

    2009-01-01

    to the roles of evenness, functional groups, and functional redundancy. These more parsimonious descriptions can be especially useful in identifying general diversity-function relationships in communities with large numbers of species. We provide an example of the application of the modeling framework......We develop a modeling framework that estimates the effects of species identity and diversity on ecosystem function and permits prediction of the diversity-function relationship across different types of community composition. Rather than just measure an overall effect of diversity, we separately....... These models describe community-level performance and thus do not require separate measurement of the performance of individual species. This flexible modeling approach can be tailored to test many hypotheses in biodiversity research and can suggest the interaction mechanisms that may be acting....

  14. Dynamics of radioecological and genetic processes in populations of mammalian model species at contamination of ecosystems

    International Nuclear Information System (INIS)

    Ryabokon', N.I.; Goncharova, R.I.

    2008-01-01

    A short review of data on the time course of radiobiological and genetic processes in natural populations of mammalian model species inhabiting radiocontaminated ecosystems over many generations is presented here. The described time-courses of biological end-points in these populations do not reflect the time course of the whole-body dose rates, but do the outcome of multiple processes, including the direct response to individual irradiation, the transgeneration transmission and accumulation of induced damages and the development of adaptation. (authors)

  15. From nitrogen enrichment to oxygen depletion: a mechanistic model of coastal marine ecosystems response

    DEFF Research Database (Denmark)

    Cosme, Nuno Miguel Dias; Koski, Marja; Hauschild, Michael Zwicky

    Nitrogen (N) emissions from anthropogenic sources may enrich coastal waters and lead to marine eutrophication impacts. Processes describing N-limited primary production (PP), zooplankton grazing, and bacterial respiration of sinking organic carbon, were modelled to quantify the potential dissolved...... oxygen (DO) consumption as a function of N input. Such indicator is the basis for an eXposure Factor (XF) applied in Life Cycle Impact Assessment (LCIA) to estimate impacts from N enrichment. The Large Marine Ecosystems (LME) biogeographical classification system was adopted to address the spatial...

  16. Behavior of pyrophite shrubs in mediterranean terrestrial ecosystems (i): Population and reproductive model.

    Science.gov (United States)

    Usó-Doménech, Josep-Lluis; Nescolarde-Selva, Josué-Antonio; Lloret-Climent, Miguel; González-Franco, Lucía

    2018-03-01

    The mathematical submodel ULEX is used to study the dynamic behavior of the green, floral and woody biomass of the main pyrophite shrub species, the gorse (Ulex parviflorus Pourret), and its relationship with other shrub species, typical of a Mediterranean ecosystem. The focus are the ecological conditions of post-fire stage growth, and its efficacy as a protective cover against erosion processes in the short, medium and long term, both in normal conditions and at the limits of desertification conditions. The model sets a target to observe the behavior and to anticipate and consequently intervene with adequate protection, restoration and management measures. Copyright © 2018 Elsevier Inc. All rights reserved.

  17. [Measuring water ecological carrying capacity with the ecosystem-service-based ecological footprint (ESEF) method: Theory, models and application].

    Science.gov (United States)

    Jiao, Wen-jun; Min, Qing-wen; Li, Wen-hua; Fuller, Anthony M

    2015-04-01

    Integrated watershed management based on aquatic ecosystems has been increasingly acknowledged. Such a change in the philosophy of water environment management requires recognizing the carrying capacity of aquatic ecosystems for human society from a more general perspective. The concept of the water ecological carrying capacity is therefore put forward, which considers both water resources and water environment, connects socio-economic development to aquatic ecosystems and provides strong support for integrated watershed management. In this paper, the authors proposed an ESEF-based measure of water ecological carrying capacity and constructed ESEF-based models of water ecological footprint and capacity, aiming to evaluate water ecological carrying capacity with footprint methods. A regional model of Taihu Lake Basin was constructed and applied to evaluate the water ecological carrying capacity in Changzhou City which located in the upper reaches of the basin. Results showed that human demand for water ecosystem services in this city had exceeded the supply capacity of local aquatic ecosystems and the significant gap between demand and supply had jeopardized the sustainability of local aquatic ecosystems. Considering aqua-product provision, water supply and pollutant absorption in an integrated way, the scale of population and economy aquatic ecosystems in Changzhou could bear only 54% of the current status.

  18. Uncertainty analysis of a coupled ecosystem response model simulating greenhouse gas fluxes from a temperate grassland

    Science.gov (United States)

    Liebermann, Ralf; Kraft, Philipp; Houska, Tobias; Breuer, Lutz; Müller, Christoph; Kraus, David; Haas, Edwin; Klatt, Steffen

    2015-04-01

    Among anthropogenic greenhouse gas emissions, CO2 is the dominant driver of global climate change. Next to its direct impact on the radiation budget, it also affects the climate system by triggering feedback mechanisms in terrestrial ecosystems. Such mechanisms - like stimulated photosynthesis, increased root exudations and reduced stomatal transpiration - influence both the input and the turnover of carbon and nitrogen compounds in the soil. The stabilization and decomposition of these compounds determines how increasing CO2 concentrations change the terrestrial trace gas emissions, especially CO2, N2O and CH4. To assess the potential reaction of terrestrial greenhouse gas emissions to rising tropospheric CO2 concentration, we make use of a comprehensive ecosystem model integrating known processes and fluxes of the carbon-nitrogen cycle in soil, vegetation and water. We apply a state-of-the-art ecosystem model with measurements from a long term field experiment of CO2 enrichment. The model - a grassland realization of LandscapeDNDC - simulates soil chemistry coupled with plant physiology, microclimate and hydrology. The data - comprising biomass, greenhouse gas emissions, management practices and soil properties - has been attained from a FACE (Free Air Carbon dioxide Enrichment) experiment running since 1997 on a temperate grassland in Giessen, Germany. Management and soil data, together with weather records, are used to drive the model, while cut biomass as well as CO2 and N2O emissions are used for calibration and validation. Starting with control data from installations without CO2 enhancement, we begin with a GLUE (General Likelihood Uncertainty Estimation) assessment using Latin Hypercube to reduce the range of the model parameters. This is followed by a detailed sensitivity analysis, the application of DREAM-ZS for model calibration, and an estimation of the effect of input uncertainty on the simulation results. Since first results indicate problems with

  19. Evaluation and inversion of a net ecosystem carbon exchange model for grasslands and croplands

    Science.gov (United States)

    Herbst, M.; Klosterhalfen, A.; Weihermueller, L.; Graf, A.; Schmidt, M.; Huisman, J. A.; Vereecken, H.

    2017-12-01

    A one-dimensional soil water, heat, and CO2 flux model (SOILCO2), a pool concept of soil carbon turnover (RothC), and a crop growth module (SUCROS) was coupled to predict the net ecosystem exchange (NEE) of carbon. This model, further referred to as AgroC, was extended with routines for managed grassland as well as for root exudation and root decay. In a first step, the coupled model was applied to two winter wheat sites and one upland grassland site in Germany. The model was calibrated based on soil water content, soil temperature, biometric, and soil respiration measurements for each site, and validated in terms of hourly NEE measured with the eddy covariance technique. The overall model performance of AgroC was acceptable with a model efficiency >0.78 for NEE. In a second step, AgroC was optimized with the eddy covariance NEE measurements to examine the effect of various objective functions, constraints, and data-transformations on estimated NEE, which showed a distinct sensitivity to the choice of objective function and the inclusion of soil respiration data in the optimization process. Both, day and nighttime fluxes, were found to be sensitive to the selected optimization strategy. Additional consideration of soil respiration measurements improved the simulation of small positive fluxes remarkably. Even though the model performance of the selected optimization strategies did not diverge substantially, the resulting annual NEE differed substantially. We conclude that data-transformation, definition of objective functions, and data sources have to be considered cautiously when using a terrestrial ecosystem model to determine carbon balances by means of eddy covariance measurements.

  20. Predicting the effects of ionising radiation on ecosystems by a generic model based on the Lotka-Volterra equations

    International Nuclear Information System (INIS)

    Monte, Luigi

    2009-01-01

    The present work describes a model for predicting the population dynamics of the main components (resources and consumers) of terrestrial ecosystems exposed to ionising radiation. The ecosystem is modelled by the Lotka-Volterra equations with consumer competition. Linear dose-response relationships without threshold are assumed to relate the values of the model parameters to the dose rates. The model accounts for the migration of consumers from areas characterised by different levels of radionuclide contamination. The criteria to select the model parameter values are motivated by accounting for the results of the empirical studies of past decades. Examples of predictions for long-term chronic exposure are reported and discussed.

  1. Estimating California ecosystem carbon change using process model and land cover disturbance data: 1951-2000

    Science.gov (United States)

    Liu, Jinxun; Vogelmann, James E.; Zhu, Zhiliang; Key, Carl H.; Sleeter, Benjamin M.; Price, D.T.; Chen, Jing M.; Cochrane, Mark A.; Eidenshink, Jeffery C.; Howard, Stephen M.; Bliss, Norman B.; Jiang, Hong

    2011-01-01

    Land use change, natural disturbance, and climate change directly alter ecosystem productivity and carbon stock level. The estimation of ecosystem carbon dynamics depends on the quality of land cover change data and the effectiveness of the ecosystem models that represent the vegetation growth processes and disturbance effects. We used the Integrated Biosphere Simulator (IBIS) and a set of 30- to 60-m resolution fire and land cover change data to examine the carbon changes of California's forests, shrublands, and grasslands. Simulation results indicate that during 1951–2000, the net primary productivity (NPP) increased by 7%, from 72.2 to 77.1 Tg C yr−1 (1 teragram = 1012 g), mainly due to CO2 fertilization, since the climate hardly changed during this period. Similarly, heterotrophic respiration increased by 5%, from 69.4 to 73.1 Tg C yr−1, mainly due to increased forest soil carbon and temperature. Net ecosystem production (NEP) was highly variable in the 50-year period but on average equalled 3.0 Tg C yr−1 (total of 149 Tg C). As with NEP, the net biome production (NBP) was also highly variable but averaged −0.55 Tg C yr−1 (total of –27.3 Tg C) because NBP in the 1980s was very low (–5.34 Tg C yr−1). During the study period, a total of 126 Tg carbon were removed by logging and land use change, and 50 Tg carbon were directly removed by wildland fires. For carbon pools, the estimated total living upper canopy (tree) biomass decreased from 928 to 834 Tg C, and the understory (including shrub and grass) biomass increased from 59 to 63 Tg C. Soil carbon and dead biomass carbon increased from 1136 to 1197 Tg C.Our analyses suggest that both natural and human processes have significant influence on the carbon change in California. During 1951–2000, climate interannual variability was the key driving force for the large interannual changes of ecosystem carbon source and sink at the state level, while logging and fire

  2. Bioremediation in marine ecosystems: a computational study combining ecological modelling and flux balance analysis

    Directory of Open Access Journals (Sweden)

    Marianna eTaffi

    2014-09-01

    Full Text Available The pressure to search effective bioremediation methodologies for contaminated ecosystems has led to the large-scale identification of microbial species and metabolic degradation pathways. However, minor attention has been paid to the study of bioremediation in marine food webs and to the definition of integrated strategies for reducing bioaccumulation in species. We propose a novel computational framework for analysing the multiscale effects of bioremediation at the ecosystem level, based on coupling food web bioaccumulation models and metabolic models of degrading bacteria. The combination of techniques from synthetic biology and ecological network analysis allows the specification of arbitrary scenarios of contaminant removal and the evaluation of strategies based on natural or synthetic microbial strains.In this study, we derive a bioaccumulation model of polychlorinated biphenyls (PCBs in the Adriatic food web, and we extend a metabolic reconstruction of Pseudomonas putida KT2440 (iJN746 with the aerobic pathway of PCBs degradation. We assess the effectiveness of different bioremediation scenarios in reducing PCBs concentration in species and we study indices of species centrality to measure their importance in the contaminant diffusion via feeding links.The analysis of the Adriatic sea case study suggests that our framework could represent a practical tool in the design of effective remediation strategies, providing at the same time insights into the ecological role of microbial communities within food webs.

  3. A model to assess the emission of individual isoprenoids emitted from Italian ecosystems

    Science.gov (United States)

    Kemper Pacheco, C. J.; Fares, S.; Loreto, F.; Ciccioli, P.

    2012-04-01

    The aim of this work was to develop a GIS-based model to estimate the emissions from the Italian forest ecosystems. The model was aimed at generating a species-specific emission inventory for isoprene and individual monoterpenes that could have been validated with experimental data collected in selected sites of the CARBOITALY network. The model was develop for the year 2006. At a resolution of 1 km2 with a daily time resolution. By using the emission rates of individual components obtained through several laboratory and field experiments carried out on different vegetation species of the Mediterranean basin, maps of individual isoprenoids were generated for the Italian ecosystems. The spatial distribution and fractional contents of vegetation species present in the Italian forest ecosystems was obtained by combining the CORINE IV land cover map with National Forest Inventory based on ground observations performed at local levels by individual Italian regions (22) in which the country is divided. In general, basal emission rates for individual isoprenoids was reported by Steinbrecher et al. 1997 and Karl et al. 2009 were used. In this case, classes were further subdivided into T and L+T emitters as functions of the active pool. In many instances, however they were revised based on the results obtained in our Institute through determinations performed at leaf, branch (cuvette method) or ecosystem level (REA and the gradient method). In the latter case, studies performed in Italy and/or Mediterranean countries were used. An empirical light extinction function as a function of the canopy type and structure was introduced. The algorithms proposed by (Guenther et al. 1993) were used, but, they were often adapted to fit with the experimental observations made in the Mediterranean Areas. They were corrected for a seasonality factor (Steinbrecher et al. 2009) taking into account a time lag in leaf sprouting due to the plant elevation. A simple parameterization with LAI was

  4. A Satellite-Based Model for Simulating Ecosystem Respiration in the Tibetan and Inner Mongolian Grasslands

    Directory of Open Access Journals (Sweden)

    Rong Ge

    2018-01-01

    Full Text Available It is important to accurately evaluate ecosystem respiration (RE in the alpine grasslands of the Tibetan Plateau and the temperate grasslands of the Inner Mongolian Plateau, as it serves as a sensitivity indicator of regional and global carbon cycles. Here, we combined flux measurements taken between 2003 and 2013 from 16 grassland sites across northern China and the corresponding MODIS land surface temperature (LST, enhanced vegetation index (EVI, and land surface water index (LSWI to build a satellite-based model to estimate RE at a regional scale. First, the dependencies of both spatial and temporal variations of RE on these biotic and climatic factors were examined explicitly. We found that plant productivity and moisture, but not temperature, can best explain the spatial pattern of RE in northern China’s grasslands; while temperature plays a major role in regulating the temporal variability of RE in the alpine grasslands, and moisture is equally as important as temperature in the temperate grasslands. However, the moisture effect on RE and the explicit representation of spatial variation process are often lacking in most of the existing satellite-based RE models. On this basis, we developed a model by comprehensively considering moisture, temperature, and productivity effects on both temporal and spatial processes of RE, and then, we evaluated the model performance. Our results showed that the model well explained the observed RE in both the alpine (R2 = 0.79, RMSE = 0.77 g C m−2 day−1 and temperate grasslands (R2 = 0.75, RMSE = 0.60 g C m−2 day−1. The inclusion of the LSWI as the water-limiting factor substantially improved the model performance in arid and semi-arid ecosystems, and the spatialized basal respiration rate as an indicator for spatial variation largely determined the regional pattern of RE. Finally, the model accurately reproduced the seasonal and inter-annual variations and spatial variability of RE, and it avoided

  5. Uncertainty Source of Modeled Ecosystem Productivity in East Asian Monsoon Region: A Traceability Analysis

    Science.gov (United States)

    Cui, E.; Xia, J.; Huang, K.; Ito, A.; Arain, M. A.; Jain, A. K.; Poulter, B.; Peng, C.; Hayes, D. J.; Ricciuto, D. M.; Huntzinger, D. N.; Tian, H.; Mao, J.; Fisher, J.; Schaefer, K. M.; Huang, M.; Peng, S.; Wang, W.

    2017-12-01

    East Asian monsoon region, benefits from sufficient water-heat availability and increasing nitrogen deposition, represents significantly higher net ecosystem productivity than the same latitudes of Europe-Africa and North America. A better understanding of major contributions to the uncertainties of terrestrial carbon cycle in this region is greatly important for evaluating the global carbon balance. This study analyzed the key carbon processes and parameters derived from a series of terrestrial biosphere models. A wide range of inter-model disagreement on GPP was found in China's subtropical regions. Then, this large difference was traced to a few traceable components included in terrestrial carbon cycle. The increase in ensemble mean GPP over 1901-2010 was predominantly resulted from increasing atmospheric CO2 concentration and nitrogen deposition, while high frequent land-use change over this region showed a slightly negative effect on GPP. However, inter-model differences of GPP were mainly attributed to the baseline simulations without changes in external forcing. According to the variance decomposition, the large spread in simulated GPP was well explained by the differences in leaf area index (LAI) and specific leaf area (SLA) among models. In addition, the underlying errors in simulated GPP propagate through the model and introduce some additional errors to the simulation of NPP and biomass. By comparing the simulations with satellite-derived, data-oriented and observation-based datasets, we further found that GPP, vegetation carbon turn-over time, aboveground biomass, LAI and SLA were all overestimated in most of the models while biomass distribution in leaves was significantly underestimated. The results of this study indicate that model performance on ecosystem productivity in East Asian monsoon region can be improved by a more realistic representation of leaf functional traits.

  6. Generating daily weather data for ecosystem modelling in the Congo River Basin

    Science.gov (United States)

    Petritsch, Richard; Pietsch, Stephan A.

    2010-05-01

    Daily weather data are an important constraint for diverse applications in ecosystem research. In particular, temperature and precipitation are the main drivers for forest ecosystem productivity. Mechanistic modelling theory heavily relies on daily values for minimum and maximum temperatures, precipitation, incident solar radiation and vapour pressure deficit. Although the number of climate measurement stations increased during the last centuries, there are still regions with limited climate data. For example, in the WMO database there are only 16 stations located in Gabon with daily weather measurements. Additionally, the available time series are heavily affected by measurement errors or missing values. In the WMO record for Gabon, on average every second day is missing. Monthly means are more robust and may be estimated over larger areas. Therefore, a good alternative is to interpolate monthly mean values using a sparse network of measurement stations, and based on these monthly data generate daily weather data with defined characteristics. The weather generator MarkSim was developed to produce climatological time series for crop modelling in the tropics. It provides daily values for maximum and minimum temperature, precipitation and solar radiation. The monthly means can either be derived from the internal climate surfaces or prescribed as additional inputs. We compared the generated outputs observations from three climate stations in Gabon (Lastourville, Moanda and Mouilla) and found that maximum temperature and solar radiation were heavily overestimated during the long dry season. This is due to the internal dependency of the solar radiation estimates to precipitation. With no precipitation a cloudless sky is assumed and thus high incident solar radiation and a large diurnal temperature range. However, in reality it is cloudy in the Congo River Basin during the long dry season. Therefore, we applied a correction factor to solar radiation and temperature range

  7. Attributing Asymmetric Productivity Responses to Internal Ecosystem Dynamics and External Drivers Using Probabilistic Models

    Science.gov (United States)

    Parolari, A.; Goulden, M.

    2017-12-01

    A major challenge to interpreting asymmetric changes in ecosystem productivity is the attribution of these changes to external climate forcing or to internal ecophysiological processes that respond to these drivers (e.g., photosynthesis response to drying soil). For example, positive asymmetry in productivity can result from either positive skewness in the distribution of annual rainfall amount or from negative curvature in the productivity response to annual rainfall. To analyze the relative influences of climate and ecosystem dynamics on both positive and negative asymmetry in multi-year ANPP experiments, we use a multi-scale coupled ecosystem water-carbon model to interpret field experimental results that span gradients of rainfall skewness and ANPP response curvature. The model integrates rainfall variability, soil moisture dynamics, and net carbon assimilation from the daily to inter-annual scales. From the underlying physical basis of the model, we compute the joint probability distribution of the minimum and maximum ANPP for an annual ANPP experiment of N years. The distribution is used to estimate the likelihood that either positive or negative asymmetry will be observed in an experiment, given the annual rainfall distribution and the ANPP response curve. We estimate the total asymmetry as the mode of this joint distribution and the relative contribution attributable to rainfall skewness as the mode for a linear ANPP response curve. Applied to data from several long-term ANPP experiments, we find that there is a wide range of observed ANPP asymmetry (positive and negative) and a spectrum of contributions from internal and external factors. We identify the soil water holding capacity relative to the mean rain event depth as a critical ecosystem characteristic that controls the non-linearity of the ANPP response and positive curvature at high rainfall. Further, the seasonal distribution of rainfall is shown to control the presence or absence of negative

  8. Modeling techniques for predicting long-term consequences of the effects of radiation on natural aquatic populations and ecosystems

    International Nuclear Information System (INIS)

    Van Winkle, W.

    1977-01-01

    Appropriate modeling techniques already exist for investigating some long-term consequences of the effects of radiation on natural aquatic populations and ecosystems, even if to date these techniques have not been used for this purpose. At the low levels of irradiation estimated to occur in natural aquatic systems, effects are difficult to detect at even the individual level much less the population or ecosystem level where the subtle effects of radiation are likely to be completely overshadowed by the effects of other environmental factors and stresses and the natural variability of the system. The claim that population and ecosystem models can be accurate and reliable predictive tools in assessing any stress has been oversold. Nonetheless, the use of these tools can be useful for learning more about the effects of radioactive releases on aquatic populations and ecosystems

  9. Bridging the gap between theoretical ecology and real ecosystems: modeling invertebrate community composition in streams.

    Science.gov (United States)

    Schuwirth, Nele; Reichert, Peter

    2013-02-01

    For the first time, we combine concepts of theoretical food web modeling, the metabolic theory of ecology, and ecological stoichiometry with the use of functional trait databases to predict the coexistence of invertebrate taxa in streams. We developed a mechanistic model that describes growth, death, and respiration of different taxa dependent on various environmental influence factors to estimate survival or extinction. Parameter and input uncertainty is propagated to model results. Such a model is needed to test our current quantitative understanding of ecosystem structure and function and to predict effects of anthropogenic impacts and restoration efforts. The model was tested using macroinvertebrate monitoring data from a catchment of the Swiss Plateau. Even without fitting model parameters, the model is able to represent key patterns of the coexistence structure of invertebrates at sites varying in external conditions (litter input, shading, water quality). This confirms the suitability of the model concept. More comprehensive testing and resulting model adaptations will further increase the predictive accuracy of the model.

  10. Estimation of Carbon Flux of Forest Ecosystem over Qilian Mountains by BIOME-BGC Model

    Science.gov (United States)

    Yan, Min; Tian, Xin; Li, Zengyuan; Chen, Erxue; Li, Chunmei

    2014-11-01

    The gross primary production (GPP) and net ecosystem exchange (NEE) are important indicators for carbon fluxes. This study aims at evaluating the forest GPP and NEE over the Qilian Mountains using meteorological, remotely sensed and other ancillary data at large scale. To realize this, the widely used ecological-process-based model, Biome-BGC, and remote-sensing-based model, MODIS GPP algorithm, were selected for the simulation of the forest carbon fluxes. The combination of these two models was based on calibrating the Biome-BGC by the optimized MODIS GPP algorithm. The simulated GPP and NEE values were evaluated against the eddy covariance observed GPPs and NEEs, and the well agreements have been reached, with R2=0.76, 0.67 respectively.

  11. Enhanced science-stakeholder communication to improve ecosystem model performances for climate change impact assessments

    DEFF Research Database (Denmark)

    Jonsson, Anna Maria; Anderbrant, Olle; Holmer, Jennie

    2015-01-01

    In recent years, climate impact assessments of relevance to the agricultural and forestry sectors have received considerable attention. Current ecosystem models commonly capture the effect of a warmer climate on biomass production, but they rarely sufficiently capture potential losses caused...... by pests, pathogens and extreme weather events. In addition, alternative management regimes may not be integrated in the models. A way to improve the quality of climate impact assessments is to increase the science–stakeholder collaboration, and in a two-way dialog link empirical experience and impact...... a discussion among the science–stakeholder communities on how to quantify the potential for climate change adaptation by improving the realism in the models....

  12. Bayesian analysis of non-linear differential equation models with application to a gut microbial ecosystem.

    Science.gov (United States)

    Lawson, Daniel J; Holtrop, Grietje; Flint, Harry

    2011-07-01

    Process models specified by non-linear dynamic differential equations contain many parameters, which often must be inferred from a limited amount of data. We discuss a hierarchical Bayesian approach combining data from multiple related experiments in a meaningful way, which permits more powerful inference than treating each experiment as independent. The approach is illustrated with a simulation study and example data from experiments replicating the aspects of the human gut microbial ecosystem. A predictive model is obtained that contains prediction uncertainty caused by uncertainty in the parameters, and we extend the model to capture situations of interest that cannot easily be studied experimentally. Copyright © 2011 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  13. Ocean Futures Under Ocean Acidification, Marine Protection, and Changing Fishing Pressures Explored Using a Worldwide Suite of Ecosystem Models

    OpenAIRE

    Erik Olsen; Isaac C. Kaplan; Cameron Ainsworth; Gavin Fay; Sarah Gaichas; Robert Gamble; Raphael Girardin; Cecilie H. Eide; Thomas F. Ihde; Hem Nalini Morzaria-Luna; Hem Nalini Morzaria-Luna; Hem Nalini Morzaria-Luna; Kelli F. Johnson; Marie Savina-Rolland; Howard Townsend

    2018-01-01

    Ecosystem-based management (EBM) of the ocean considers all impacts on and uses of marine and coastal systems. In recent years, there has been a heightened interest in EBM tools that allow testing of alternative management options and help identify tradeoffs among human uses. End-to-end ecosystem modeling frameworks that consider a wide range of management options are a means to provide integrated solutions to the complex ocean management problems encountered in EBM. Here, we leverage the glo...

  14. Development of radionuclide transport model in the ecosystem of brackish lake Obuchi

    International Nuclear Information System (INIS)

    Ueda, Shinji; Kondo, Kunio; Chikuchi, Yuki; Inaba, Jiro

    2003-01-01

    The purpose of this study is to develop a computer code for a radionuclide transport model in Lake Obuchi which is adjacent to nuclear fuel cycle facilities including a nuclear spent-fuel reprocessing plant under construction in Rokkasho-mura. The lake is brackish and this fact makes the entry mode of radionuclides into the lake and its ecosystem very characteristic. For the construction of the code, it is important to incorporate the characteristics of the ecosystem as well as the hydraulic movements into the model. In the present study we report the biological parameters related to the transport model obtained from field observations and a laboratory experiment. We also give results from development of an advective-diffusion model. Monthly field observations revealed that 18 to 47 species of phytoplankton, 9 to 20 species of zooplankton and 0 to 21 species of benthos were present in the lake. A marked seasonal change was observed in the dominant species for both planktons. Mean carbon masses of DOC, POC, phytoplankton and zooplankton in the lake were 16 x 10 4 , 5.9 x 10 4 , 3.7 x 10 4 and 0.20 x 10 4 kg-C, respectively. Phytoplanktons of 10 species in 8 genera were isolated and maintained in a bacteria-free medium in the laboratory. Some physiological and metabolic characteristics of the planktons were studied under those conditions. An advective-diffusion model was developed for particles in the lake. Field observations showed that the model could simulate formation and elimination of the water current. (author)

  15. Detecting ecosystem performance anomalies for land management in the upper colorado river basin using satellite observations, climate data, and ecosystem models

    Science.gov (United States)

    Gu, Yingxin; Wylie, B.K.

    2010-01-01

    This study identifies areas with ecosystem performance anomalies (EPA) within the Upper Colorado River Basin (UCRB) during 2005-2007 using satellite observations, climate data, and ecosystem models. The final EPA maps with 250-m spatial resolution were categorized as normal performance, underperformance, and overperformance (observed performance relative to weather-based predictions) at the 90% level of confidence. The EPA maps were validated using "percentage of bare soil" ground observations. The validation results at locations with comparable site potential showed that regions identified as persistently underperforming (overperforming) tended to have a higher (lower) percentage of bare soil, suggesting that our preliminary EPA maps are reliable and agree with ground-based observations. The 3-year (2005-2007) persistent EPA map from this study provides the first quantitative evaluation of ecosystem performance anomalies within the UCRB and will help the Bureau of Land Management (BLM) identify potentially degraded lands. Results from this study can be used as a prototype by BLM and other land managers for making optimal land management decisions. ?? 2010 by the authors.

  16. An analytical framework to assist decision makers in the use of forest ecosystem model predictions

    Science.gov (United States)

    Larocque, Guy R.; Bhatti, Jagtar S.; Ascough, J.C.; Liu, J.; Luckai, N.; Mailly, D.; Archambault, L.; Gordon, Andrew M.

    2011-01-01

    The predictions from most forest ecosystem models originate from deterministic simulations. However, few evaluation exercises for model outputs are performed by either model developers or users. This issue has important consequences for decision makers using these models to develop natural resource management policies, as they cannot evaluate the extent to which predictions stemming from the simulation of alternative management scenarios may result in significant environmental or economic differences. Various numerical methods, such as sensitivity/uncertainty analyses, or bootstrap methods, may be used to evaluate models and the errors associated with their outputs. However, the application of each of these methods carries unique challenges which decision makers do not necessarily understand; guidance is required when interpreting the output generated from each model. This paper proposes a decision flow chart in the form of an analytical framework to help decision makers apply, in an orderly fashion, different steps involved in examining the model outputs. The analytical framework is discussed with regard to the definition of problems and objectives and includes the following topics: model selection, identification of alternatives, modelling tasks and selecting alternatives for developing policy or implementing management scenarios. Its application is illustrated using an on-going exercise in developing silvicultural guidelines for a forest management enterprise in Ontario, Canada.

  17. Assessing ecosystem effects of reservoir operations using food web-energy transfer and water quality models

    Science.gov (United States)

    Saito, L.; Johnson, B.M.; Bartholow, J.; Hanna, R.B.

    2001-01-01

    We investigated the effects on the reservoir food web of a new temperature control device (TCD) on the dam at Shasta Lake, California. We followed a linked modeling approach that used a specialized reservoir water quality model to forecast operation-induced changes in phytoplankton production. A food web–energy transfer model was also applied to propagate predicted changes in phytoplankton up through the food web to the predators and sport fishes of interest. The food web–energy transfer model employed a 10% trophic transfer efficiency through a food web that was mapped using carbon and nitrogen stable isotope analysis. Stable isotope analysis provided an efficient and comprehensive means of estimating the structure of the reservoir's food web with minimal sampling and background data. We used an optimization procedure to estimate the diet proportions of all food web components simultaneously from their isotopic signatures. Some consumers were estimated to be much more sensitive than others to perturbations to phytoplankton supply. The linked modeling approach demonstrated that interdisciplinary efforts enhance the value of information obtained from studies of managed ecosystems. The approach exploited the strengths of engineering and ecological modeling methods to address concerns that neither of the models could have addressed alone: (a) the water quality model could not have addressed quantitatively the possible impacts to fish, and (b) the food web model could not have examined how phytoplankton availability might change due to reservoir operations.

  18. From cultured to uncultured genome sequences: metagenomics and modeling microbial ecosystems.

    Science.gov (United States)

    Garza, Daniel R; Dutilh, Bas E

    2015-11-01

    Microorganisms and the viruses that infect them are the most numerous biological entities on Earth and enclose its greatest biodiversity and genetic reservoir. With strength in their numbers, these microscopic organisms are major players in the cycles of energy and matter that sustain all life. Scientists have only scratched the surface of this vast microbial world through culture-dependent methods. Recent developments in generating metagenomes, large random samples of nucleic acid sequences isolated directly from the environment, are providing comprehensive portraits of the composition, structure, and functioning of microbial communities. Moreover, advances in metagenomic analysis have created the possibility of obtaining complete or nearly complete genome sequences from uncultured microorganisms, providing important means to study their biology, ecology, and evolution. Here we review some of the recent developments in the field of metagenomics, focusing on the discovery of genetic novelty and on methods for obtaining uncultured genome sequences, including through the recycling of previously published datasets. Moreover we discuss how metagenomics has become a core scientific tool to characterize eco-evolutionary patterns of microbial ecosystems, thus allowing us to simultaneously discover new microbes and study their natural communities. We conclude by discussing general guidelines and challenges for modeling the interactions between uncultured microorganisms and viruses based on the information contained in their genome sequences. These models will significantly advance our understanding of the functioning of microbial ecosystems and the roles of microbes in the environment.

  19. Synergistic linkage between remote sensing and biophysical models for estimating plant ecophysiological and ecosystem processes

    International Nuclear Information System (INIS)

    Inoue, Y.; Olioso, A.

    2004-01-01

    Abstract Information on the ecological and physiological status of crops is essential for growth diagnostics and yield prediction. Within-field or between-field spatial information is required, especially with the recent trend toward precision agriculture, which seeks the efficient use of agrochemicals, water, and energy. The study of carbon and nitrogen cycles as well as environmental management on local and regional scales requires assessment of the spatial variability of biophysical and ecophysiological variables, scaling up of which is also needed for scientific and decision-making purposes. Remote sensing has great potential for these applications because it enables wide-area non-destructive, and real-time acquisition of information about ecophysiological conditions of vegetation. With recent advances in sensor technology, a variety of electromagnetic signatures, such as hyperspectral reflectance, thermal-infrared temperature, and microwave backscattering coefficients, can be acquired for both plants and ecosystems using ground-based, airborne, and satellite platforms. Their spatial and temporal resolutions have both recently been improved. This article reviews the state of the art in the remote sensing of plant ecophysiological data, with special emphasis on the synergy between remote sensing signatures and biophysical and ecophysiological process models. Several case studies for the optical, thermal, and microwave domains have demonstrated the potential of this synergistic linkage. Remote sensing and process modeling methods complement each other when combined synergistically. Further research on this approach is needed f or a wide range of ecophysiological and ecosystem studies, as well as for practical crop management

  20. Simulating the carbon balance in reclaimed forest ecosystems with the FORECAST model

    Energy Technology Data Exchange (ETDEWEB)

    Welham, C. [British Columbia Univ., Vancouver, BC (Canada). Dept. of Forest Sciences, Forest Ecosystem Simulation Group; ForRx Consulting, Belcarra, BC (Canada); 3GreenTree Ecosystem Services Ltd., Belcarra, BC (Canada)

    2010-07-01

    Large emission sources are beginning to report their carbon footprint on an annual basis as a result of government mandates, shareholder demand for disclosure of a company's risk to climate change, and as part of corporate social responsibility initiatives. Oil sands mining is a carbon intensive activity from the perspective of carbon dioxide emissions. The intensity of carbon emissions can be mitigated through technological and process innovations. However, reclamation is the only mining-related activity that directly removes atmospheric carbon dioxide. This presentation described a modeling exercise that had 3 principal objectives, notably to simulate the carbon balance in a developing reclaimed upland forest ecosystem; to explore the relative change in carbon pools over time; and to compare the carbon balance of the reclaimed ecosystem to its natural analogue. The presentation provided a description of the model and methodology and discussed the simulation protocol. Imperial Oil's Kearl Lake operation, which was used as a test case, showed that approximately 83,000 tonnes of carbon dioxide per hectare can be sequestered per year as a result of reclamation. tabs., figs.

  1. Including sugar cane in the agro-ecosystem model ORCHIDEE-STICS

    Science.gov (United States)

    Valade, A.; Vuichard, N.; Ciais, P.; Viovy, N.

    2010-12-01

    With 4 million ha currently grown for ethanol in Brazil only, approximately half the global bioethanol production in 2005 (Smeets 2008), and a devoted land area expected to expand globally in the years to come, sugar cane is at the heart of the biofuel debate. Indeed, ethanol made from biomass is currently the most widespread option for alternative transportation fuels. It was originally promoted as a carbon neutral energy resource that could bring energy independence to countries and local opportunities to farmers, until attention was drawn to its environmental and socio-economical drawbacks. It is still not clear to which extent it is a solution or a contributor to climate change mitigation. Dynamic Global Vegetation models can help address these issues and quantify the potential impacts of biofuels on ecosystems at scales ranging from on-site to global. The global agro-ecosystem model ORCHIDEE describes water, carbon and energy exchanges at the soil-atmosphere interface for a limited number of natural and agricultural vegetation types. In order to integrate agricultural management to the simulations and to capture more accurately the specificity of crops' phenology, ORCHIDEE has been coupled with the agronomical model STICS. The resulting crop-oriented vegetation model ORCHIDEE-STICS has been used so far to simulate temperate crops such as wheat, corn and soybean. As a generic ecosystem model, each grid cell can include several vegetation types with their own phenology and management practices, making it suitable to spatial simulations. Here, ORCHIDEE-STICS is altered to include sugar cane as a new agricultural Plant functional Type, implemented and parametrized using the STICS approach. An on-site calibration and validation is then performed based on biomass and flux chamber measurements in several sites in Australia and variables such as LAI, dry weight, heat fluxes and respiration are used to evaluate the ability of the model to simulate the specific

  2. Millennium Ecosystem Assessment: MA Ecosystems

    Data.gov (United States)

    National Aeronautics and Space Administration — The Millennium Ecosystem Assessment: MA Ecosystems provides data and information on the extent and classification of ecosystems circa 2000, including coastal,...

  3. Nitrogen leaching from natural ecosystems under global change: a modelling study

    Science.gov (United States)

    Braakhekke, Maarten C.; Rebel, Karin T.; Dekker, Stefan C.; Smith, Benjamin; Beusen, Arthur H. W.; Wassen, Martin J.

    2017-12-01

    To study global nitrogen (N) leaching from natural ecosystems under changing N deposition, climate, and atmospheric CO2, we performed a factorial model experiment for the period 1901-2006 with the N-enabled global terrestrial ecosystem model LPJ-GUESS (Lund-Potsdam-Jena General Ecosystem Simulator). In eight global simulations, we used either the true transient time series of N deposition, climate, and atmospheric CO2 as input or kept combinations of these drivers constant at initial values. The results show that N deposition is globally the strongest driver of simulated N leaching, individually causing an increase of 88 % by 1997-2006 relative to pre-industrial conditions. Climate change led globally to a 31 % increase in N leaching, but the size and direction of change varied among global regions: leaching generally increased in regions with high soil organic carbon storage and high initial N status, and decreased in regions with a positive trend in vegetation productivity or decreasing precipitation. Rising atmospheric CO2 generally caused decreased N leaching (33 % globally), with strongest effects in regions with high productivity and N availability. All drivers combined resulted in a rise of N leaching by 73 % with strongest increases in Europe, eastern North America and South-East Asia, where N deposition rates are highest. Decreases in N leaching were predicted for the Amazon and northern India. We further found that N loss by fire regionally is a large term in the N budget, associated with lower N leaching, particularly in semi-arid biomes. Predicted global N leaching from natural lands rose from 13.6 Tg N yr-1 in 1901-1911 to 18.5 Tg N yr-1 in 1997-2006, accounting for reductions of natural land cover. Ecosystem N status (quantified as the reduction of vegetation productivity due to N limitation) shows a similar positive temporal trend but large spatial variability. Interestingly, this variability is more strongly related to vegetation type than N input

  4. Removal of nutrient limitations in forest gaps enhances growth rate and resistance to cavitation in subtropical canopy tree species differing in shade tolerance.

    Science.gov (United States)

    Villagra, Mariana; Campanello, Paula I; Montti, Lia; Goldstein, Guillermo

    2013-03-01

    A 4-year fertilization experiment with nitrogen (N) and phosphorus (P) was carried out in natural gaps of a subtropical forest in northeastern Argentina. Saplings of six dominant canopy species differing in shade tolerance were grown in five control and five N + P fertilized gaps. Hydraulic architectural traits such as wood density, the leaf area to sapwood area ratio (LA : SA), vulnerability to cavitation (P50) and specific and leaf-specific hydraulic conductivity were measured, as well as the relative growth rate, specific leaf area (SLA) and percentage of leaf damage by insect herbivores. Plant growth rates and resistance to drought-induced embolisms increased when nutrient limitations were removed. On average, the P50 of control plants was -1.1 MPa, while the P50 of fertilized plants was -1.6 MPa. Wood density and LA : SA decreased with N + P additions. A trade-off between vulnerability to cavitation and efficiency of water transport was not observed. The relative growth rate was positively related to the total leaf surface area per plant and negatively related to LA : SA, while P50 was positively related to SLA across species and treatments. Plants with higher growth rates and higher total leaf area in fertilized plots were able to avoid hydraulic dysfunction by becoming less vulnerable to cavitation (more negative P50). Two high-light-requiring species exhibited relatively low growth rates due to heavy herbivore damage. Contrary to expectations, shade-tolerant plants with relatively high resistance to hydraulic dysfunction and reduced herbivory damage were able to grow faster. These results suggest that during the initial phase of sapling establishment in gaps, species that were less vulnerable to cavitation and exhibited reduced herbivory damage had faster realized growth rates than less shade-tolerant species with higher potential growth rates. Finally, functional relationships between hydraulic traits and growth rate across species and treatments

  5. A singular evolutive extended Kalman filter to assimilate real in situ data in a 1-D marine ecosystem model

    Directory of Open Access Journals (Sweden)

    I. Hoteit

    2003-01-01

    Full Text Available A singular evolutive extended Kalman (SEEK filter is used to assimilate real in situ data in a water column marine ecosystem model. The biogeochemistry of the ecosystem is described by the European Regional Sea Ecosystem Model (ERSEM, while the physical forcing is described by the Princeton Ocean Model (POM. In the SEEK filter, the error statistics are parameterized by means of a suitable basis of empirical orthogonal functions (EOFs. The purpose of this contribution is to track the possibility of using data assimilation techniques for state estimation in marine ecosystem models. In the experiments, real oxygen and nitrate data are used and the results evaluated against independent chlorophyll data. These data were collected from an offshore station at three different depths for the needs of the MFSPP project. The assimilation results show a continuous decrease in the estimation error and a clear improvement in the model behavior. Key words. Oceanography: general (ocean prediction; numerical modelling – Oceanography: biological and chemical (ecosystems and ecology

  6. Climate-based models for pulsed resources improve predictability of consumer population dynamics: outbreaks of house mice in forest ecosystems.

    Directory of Open Access Journals (Sweden)

    E Penelope Holland

    Full Text Available Accurate predictions of the timing and magnitude of consumer responses to episodic seeding events (masts are important for understanding ecosystem dynamics and for managing outbreaks of invasive species generated by masts. While models relating consumer populations to resource fluctuations have been developed successfully for a range of natural and modified ecosystems, a critical gap that needs addressing is better prediction of resource pulses. A recent model used change in summer temperature from one year to the next (ΔT for predicting masts for forest and grassland plants in New Zealand. We extend this climate-based method in the framework of a model for consumer-resource dynamics to predict invasive house mouse (Mus musculus outbreaks in forest ecosystems. Compared with previous mast models based on absolute temperature, the ΔT method for predicting masts resulted in an improved model for mouse population dynamics. There was also a threshold effect of ΔT on the likelihood of an outbreak occurring. The improved climate-based method for predicting resource pulses and consumer responses provides a straightforward rule of thumb for determining, with one year's advance warning, whether management intervention might be required in invaded ecosystems. The approach could be applied to consumer-resource systems worldwide where climatic variables are used to model the size and duration of resource pulses, and may have particular relevance for ecosystems where global change scenarios predict increased variability in climatic events.

  7. Energy technology impacts on agriculture with a bibliography of models for impact assessment on crop ecosystems

    Energy Technology Data Exchange (ETDEWEB)

    Rupp, E.M.; Luxmoore, R.J.; Parzyck, D.C.

    1979-09-01

    Possible impacts of energy technologies on agriculture are evaluated, and some of the available simulation models that can be used for predictive purposes are identified. An overview of energy technologies and impacts on the environment is presented to provide a framework for the commentary on the models. Coal combustion is shown to have major impacts on the environment and these will continue into the next century according to current Department of Energy projections. Air pollution effects will thus remain as the major impacts on crop ecosystems. Two hundred reports were evaluated, representing a wide range of models increasing in complexity from mathematical functions (fitted to data) through parametric models (which represent phenomena without describing the mechanisms) to mechanistic models (based on physical, chemical, and physiological principles). Many models were viewed as suitable for adaptation to technology assessment through the incorporation of representative dose-response relationships. It is clear that in many cases available models cannot be taken and directly applied in technology assessment. Very few models of air pollutant-crop interactions were identified, even though there is a considerable data base of pollutant effects on crops.

  8. Fogwater deposition modeling for terrestrial ecosystems: A review of developments and measurements

    Science.gov (United States)

    Katata, Genki

    2014-07-01

    Recent progress in modeling fogwater (and low cloud water) deposition over terrestrial ecosystems during fogwater droplet interception by vegetative surfaces is reviewed. Several types of models and parameterizations for fogwater deposition are discussed with comparing assumptions, input parameter requirements, and modeled processes. The relationships among deposition velocity of fogwater (Vd) in model results, wind speed, and plant species structures associated with literature values are gathered for model validation. Quantitative comparisons between model results and observations in forest environments revealed differences as large as 2 orders of magnitude, which are likely caused by uncertainties in measurement techniques over heterogeneous landscapes. Results from the literature review show that Vd values ranged from 2.1 to 8.0 cm s-1 for short vegetation, whereas Vd = 7.7-92 cm s-1 and 0-20 cm s-1 for forests measured by throughfall-based methods and the eddy covariance method, respectively. This review also discusses the current understanding of the impacts of fogwater deposition on atmosphere-land interactions and over complex terrain based on results from numerical studies. Lastly, future research priorities in innovative modeling and observational approaches for model validation are outlined.

  9. ADVANCED EARTH OBSERVATION APPROACH FOR MULTISCALE FOREST ECOSYSTEM SERVICES MODELING AND MAPPING (MIMOSE

    Directory of Open Access Journals (Sweden)

    G. Chirici

    2014-04-01

    Full Text Available In the last decade ecosystem services (ES have been proposed as a method for quantifying the multifunctional role of forest ecosystems. Their spatial distribution on large areas is frequently limited by the lack of information, because field data collection with traditional methods requires much effort in terms of time and cost.  In this contribution we propose a methodology (namely, MultIscale Mapping Of ecoSystem servicEs - MIMOSE based on the integration of remotely sensed images and field observation to produce a wall-to-wall geodatabase of forest parcels accompanied with several information useful as a basis for future trade-off analysis of different ES. Here, we present the application of the MIMOSE approach to a study area of 443,758 hectares  coincident with administrative Molise Region in Central Italy. The procedure is based on a local high resolution forest types map integrated with information on the main forest management approaches. Through the non-parametric k-Nearest Neighbors techniques, we produced a growing stock volume map integrating a local forest inventory with a multispectral satellite IRS LISS III imagery. With the growing stock volume map we derived a forest age map for even-aged forest types. Later these information were used to automatically create a vector forest parcels map by multidimensional image segmentation that were finally populated with a number of information useful for ES spatial estimation. The contribution briefly introduce to the MIMOSE methodology presenting the preliminary results we achieved which constitute the basis for a future implementation of ES modeling.

  10. Diagnosing phosphorus limitations in natural terrestrial ecosystems in carbon cycle models

    Science.gov (United States)

    Sun, Yan; Peng, Shushi; Goll, Daniel S.; Ciais, Philippe; Guenet, Bertrand; Guimberteau, Matthieu; Hinsinger, Philippe; Janssens, Ivan A.; Peñuelas, Josep; Piao, Shilong; Poulter, Benjamin; Violette, Aurélie; Yang, Xiaojuan; Yin, Yi; Zeng, Hui

    2017-07-01

    Most of the Earth System Models (ESMs) project increases in net primary productivity (NPP) and terrestrial carbon (C) storage during the 21st century. Despite empirical evidence that limited availability of phosphorus (P) may limit the response of NPP to increasing atmospheric CO2, none of the ESMs used in the previous Intergovernmental Panel on Climate Change assessment accounted for P limitation. We diagnosed from ESM simulations the amount of P need to support increases in carbon uptake by natural ecosystems using two approaches: the demand derived from (1) changes in C stocks and (2) changes in NPP. The C stock-based additional P demand was estimated to range between -31 and 193 Tg P and between -89 and 262 Tg P for Representative Concentration Pathway (RCP) 2.6 and RCP8.5, respectively, with negative values indicating a P surplus. The NPP-based demand, which takes ecosystem P recycling into account, results in a significantly higher P demand of 648-1606 Tg P for RCP2.6 and 924-2110 Tg P for RCP8.5. We found that the P demand is sensitive to the turnover of P in decomposing plant material, explaining the large differences between the NPP-based demand and C stock-based demand. The discrepancy between diagnosed P demand and actual P availability (potential P deficit) depends mainly on the assumptions about availability of the different soil P forms. Overall, future P limitation strongly depends on both soil P availability and P recycling on ecosystem scale.

  11. Analysis of the tradeoff between agriculture and ecosystem preservation using a new ecohydrological model

    Science.gov (United States)

    Sun, Z.; Zheng, Y.; Li, X.; Tian, Y.; Zheng, C.

    2016-12-01

    Inner-basin water use conflicts are common in arid and semi-arid areas. As the second largest endorheic river basin in China, the Heihe River Basin (HRB) is exemplary of such conflicts between agriculture and ecosystem preservation. The densely distributed agriculture in the middle HRB (M-HRB) consumes a large amount of water, which has directly threatened the fragile and water-limited ecosystem in the lower HRB (L-HRB). To alleviate the conflict and prevent the trend of ecological deterioration of the L-HRB, an Ecological Water Diversion Project (EWDP) has been implemented since 2000 to ensure that enough water is released to the L-HRB. With the water diversion, an increase in the leaf area index (LAI) has been observed in the L-HRB. However, to ensure the annually allocated streamflow discharge to the L-HRB, more groundwater (GW) has been pumped for irrigation in the M-HRB, which has led to declining GW levels. How to make water management more sustainable for both agriculture and ecosystem has thus become an urgent issue. Crops and natural vegetation play vital roles in affecting the water cycle, hence it should be well integrated into a hydrological model for water management. A new Hydrological and Ecological Integrated watershed-scale FLOW model (HEIFLOW) has been developed. HEIFLOW is based on an improved version of the GSFLOW developed by the USGS and a General Eco-Hydrological Module (GEHM) developed in this study to simulate plant growth kinetics. The model has been applied to simulate the ecohydrological conditions in the M- and L-HRB. The model results show a consistently good agreement with the observation data. Analysis using the new integrated model indicates that the M-HRB GW system is not sustainable, and that the agriculture in the M-HRB has to sacrifice itself for ecological restoration in the L-HRB under the current water allocation strategy. The restoration of lower basin was further assessed under a new allocation strategy that aims to improve

  12. Developing Conceptual Models for Assessing Climate Change Impacts to Contaminant Availability in Terrestrial Ecosystems

    Science.gov (United States)

    2015-03-01

    Greenberg 2005), effects of dredged material (PIANC 2006), and ecosystem restoration (Fischenich 2008) among others. The process of developing a conceptual...Impacts to Contaminant Availability in Terrestrial Ecosystems by Burton C. Suedel, Nathan R. Beane, Eric R. Britzke, Cheryl R. Montgomery, and...are generally project or problem specific. Building a CM includes determining the components of the ecosystem , identifying relationships linking these

  13. How models can support ecosystem-based management of coral reefs

    NARCIS (Netherlands)

    Weijerman, M.W.; Fulton, E.A.; Janssen, A.B.G.; Kuiper, J.J.; Leemans, R.; Leemput, van de I.A.; Mooij, W.M.

    2015-01-01

    Despite the importance of coral reef ecosystems to the social and economic welfare of coastal communities, the condition of these marine ecosystems have generally degraded over the past decades. With an increased knowledge of coral reef ecosystem processes and a rise in computer power, dynamic

  14. Landscape Development During a Glacial Cycle: Modeling Ecosystems from the Past into the Future

    International Nuclear Information System (INIS)

    Lindborg, Tobias; Andersson, Eva; Brydsten, Lars; Stroemgren, Maarten; Sohlenius, Gustav; Loefgren, Anders

    2013-01-01

    Understanding how long-term abiotic and biotic processes are linked at a landscape level is of major interest for analyzing future impact on humans and the environment from present-day societal planning. This article uses results derived from multidisciplinary work at a coastal site in Sweden, with the aim of describing future landscape development. First, based on current and historical data, we identified climate change, shoreline displacement, and accumulation/erosion processes as the main drivers of landscape development. Second, site-specific information was combined with data from the Scandinavian region to build models that describe how the identified processes may affect the site development through time. Finally, the process models were combined to describe a whole interglacial period. With this article, we show how the landscape and ecosystem boundaries are affected by changing permafrost conditions, peat formation, sedimentation, human land use, and shoreline displacement

  15. Landscape Development During a Glacial Cycle: Modeling Ecosystems from the Past into the Future

    Energy Technology Data Exchange (ETDEWEB)

    Lindborg, Tobias; Andersson, Eva [Swedish Nuclear Fuel and Waste Management Co, Stockholm (Sweden)], E-mail: tobias.lindborg@skb.se; Brydsten, Lars [Umeaa Marine Sciences Centre, Umeaa (Sweden); Stroemgren, Maarten [Dept. of Ecology and Environmental Science, Umeaa Univ., Umeaa (Sweden); Sohlenius, Gustav [Geological Survey of Sweden, Uppsala (Sweden)] Loefgren, Anders [EcoAnalytica, Haegersten (Sweden)

    2013-05-15

    Understanding how long-term abiotic and biotic processes are linked at a landscape level is of major interest for analyzing future impact on humans and the environment from present-day societal planning. This article uses results derived from multidisciplinary work at a coastal site in Sweden, with the aim of describing future landscape development. First, based on current and historical data, we identified climate change, shoreline displacement, and accumulation/erosion processes as the main drivers of landscape development. Second, site-specific information was combined with data from the Scandinavian region to build models that describe how the identified processes may affect the site development through time. Finally, the process models were combined to describe a whole interglacial period. With this article, we show how the landscape and ecosystem boundaries are affected by changing permafrost conditions, peat formation, sedimentation, human land use, and shoreline displacement.

  16. A model for cesium-137 tranfer in the compartments of a simplified freshwater ecosystem

    International Nuclear Information System (INIS)

    Lambrechts, A.

    1984-05-01

    Cesium-137 transfer was monitored in an experimental ecosystem comprising water, sediment, a benthic organism (midge larvae), a macroplankton (waterfleas) and a fish (carp). A transfer equation was derived from experimentation at each exchange level. It was shown experimentally that these exchanges are cumulative, and their equations can be integrated in a model that takes account of the quantity and quality of the food uptake; the biological half-life and the fish growth. The model reveals the influence of factors such as the contamination duration, or the age and dietary habits of the fish; it can be used to predict their activity level according to the activity of the water, and shows the relative importance of the contamination vectors. The calculated results are coherent with the cesium content measured in fish in the Rhone river [fr

  17. Reverse engineering model structures for soil and ecosystem respiration: the potential of gene expression programming

    Directory of Open Access Journals (Sweden)

    I. Ilie

    2017-09-01

    Full Text Available Accurate model representation of land–atmosphere carbon fluxes is essential for climate projections. However, the exact responses of carbon cycle processes to climatic drivers often remain uncertain. Presently, knowledge derived from experiments, complemented by a steadily evolving body of mechanistic theory, provides the main basis for developing such models. The strongly increasing availability of measurements may facilitate new ways of identifying suitable model structures using machine learning. Here, we explore the potential of gene expression programming (GEP to derive relevant model formulations based solely on the signals present in data by automatically applying various mathematical transformations to potential predictors and repeatedly evolving the resulting model structures. In contrast to most other machine learning regression techniques, the GEP approach generates readable models that allow for prediction and possibly for interpretation. Our study is based on two cases: artificially generated data and real observations. Simulations based on artificial data show that GEP is successful in identifying prescribed functions, with the prediction capacity of the models comparable to four state-of-the-art machine learning methods (random forests, support vector machines, artificial neural networks, and kernel ridge regressions. Based on real observations we explore the responses of the different components of terrestrial respiration at an oak forest in south-eastern England. We find that the GEP-retrieved models are often better in prediction than some established respiration models. Based on their structures, we find previously unconsidered exponential dependencies of respiration on seasonal ecosystem carbon assimilation and water dynamics. We noticed that the GEP models are only partly portable across respiration components, the identification of a general terrestrial respiration model possibly prevented by equifinality issues. Overall

  18. Reverse engineering model structures for soil and ecosystem respiration: the potential of gene expression programming

    Science.gov (United States)

    Ilie, Iulia; Dittrich, Peter; Carvalhais, Nuno; Jung, Martin; Heinemeyer, Andreas; Migliavacca, Mirco; Morison, James I. L.; Sippel, Sebastian; Subke, Jens-Arne; Wilkinson, Matthew; Mahecha, Miguel D.

    2017-09-01

    Accurate model representation of land-atmosphere carbon fluxes is essential for climate projections. However, the exact responses of carbon cycle processes to climatic drivers often remain uncertain. Presently, knowledge derived from experiments, complemented by a steadily evolving body of mechanistic theory, provides the main basis for developing such models. The strongly increasing availability of measurements may facilitate new ways of identifying suitable model structures using machine learning. Here, we explore the potential of gene expression programming (GEP) to derive relevant model formulations based solely on the signals present in data by automatically applying various mathematical transformations to potential predictors and repeatedly evolving the resulting model structures. In contrast to most other machine learning regression techniques, the GEP approach generates readable models that allow for prediction and possibly for interpretation. Our study is based on two cases: artificially generated data and real observations. Simulations based on artificial data show that GEP is successful in identifying prescribed functions, with the prediction capacity of the models comparable to four state-of-the-art machine learning methods (random forests, support vector machines, artificial neural networks, and kernel ridge regressions). Based on real observations we explore the responses of the different components of terrestrial respiration at an oak forest in south-eastern England. We find that the GEP-retrieved models are often better in prediction than some established respiration models. Based on their structures, we find previously unconsidered exponential dependencies of respiration on seasonal ecosystem carbon assimilation and water dynamics. We noticed that the GEP models are only partly portable across respiration components, the identification of a general terrestrial respiration model possibly prevented by equifinality issues. Overall, GEP is a promising

  19. Denitrification in the Arabian Sea: A 3D ecosystem modelling study

    Science.gov (United States)

    Anderson, Thomas R.; Ryabchenko, Vladimir A.; Fasham, Michael J. R.; Gorchakov, Victor A.

    2007-12-01

    A three-dimensional hydrodynamic-ecosystem model was used to examine the factors determining the spatio-temporal distribution of denitrification in the Arabian Sea. The ecosystem model includes carbon and nitrogen as currencies, cycling of organic matter via detritus and dissolved organic matter, and both remineralization and denitrification as sinks for material exported below the euphotic zone. Model results captured the marked seasonality in plankton dynamics of the region, with characteristic blooms of chlorophyll in the coastal upwelling regions and central Arabian Sea during the southwest monsoon, and also in the northern Arabian Sea during the northeast monsoon as the mixed layer shoals. Predicted denitrification was 26.2 Tg N yr -1,the greatest seasonal contribution being during the northeast monsoon when primary production is co-located with the zone of anoxia. Detritus was the primary organic substrate consumed in denitrification (97%), with a small (3%) contribution by dissolved organic matter. Denitrification in the oxygen minimum zone was predicted to be fuelled almost entirely by organic matter supplied by particles sinking vertically from the euphotic zone above (0.73 mmol N m -2 d -1) rather than from lateral transport of organic matter from elsewhere in the Arabian Sea (less than 0.01 mmol N m -2 d -1). Analysis of the carbon budget in the zone of denitrification (north of 10°N and east of 55°E) indicates that the modelled vertical export flux of detritus, which is similar in magnitude to estimates from field data based on the 234Th method, is sufficient to account for measured bacterial production below the euphotic zone in the Arabian Sea.

  20. Human radiation dose resulting from forests contaminated by radionuclides: generic model and applications to the Chernobyl ecosystems

    International Nuclear Information System (INIS)

    Linkov, I.; Harvard Univ., Cambridge, MA; Schell, W.R.

    1996-01-01

    Forest ecosystems have been found to contribute significantly to the human radiation dose in the intermediate and long teens following radionuclide releases. Evaluation of the internal and external radiation dose for these critical population groups requires knowledge of radionuclide transport processes in forest ecosystems, as well as the extent of forest utilization by these populations. The high complexity of the problem requires the use of models to define and analyze the properties of the forest as well as to evaluate the ecosystem response to possible human intervention. A generic FORESTPATH model is used to calculate the internal and external radiation doses for different critical groups of consumers at different times following radionuclide release. The model is tested using the information available for contaminated forests in Belarus. Uncertainty of the model predictions are estimated by means of Monte-Carlo simulations. (author)

  1. Global Monthly CO2 Flux Inversion Based on Results of Terrestrial Ecosystem Modeling

    Science.gov (United States)

    Deng, F.; Chen, J.; Peters, W.; Krol, M.

    2008-12-01

    Most of our understanding of the sources and sinks of atmospheric CO2 has come from inverse studies of atmospheric CO2 concentration measurements. However, the number of currently available observation stations and our ability to simulate the diurnal planetary boundary layer evolution over continental regions essentially limit the number of regions that can be reliably inverted globally, especially over continental areas. In order to overcome these restrictions, a nested inverse modeling system was developed based on the Bayesian principle for estimating carbon fluxes of 30 regions in North America and 20 regions for the rest of the globe. Inverse modeling was conducted in monthly steps using CO2 concentration measurements of 5 years (2000 - 2005) with the following two models: (a) An atmospheric transport model (TM5) is used to generate the transport matrix where the diurnal variation n of atmospheric CO2 concentration is considered to enhance the use of the afternoon-hour average CO2 concentration measurements over the continental sites. (b) A process-based terrestrial ecosystem model (BEPS) is used to produce hourly step carbon fluxes, which could minimize the limitation due to our inability to solve the inverse problem in a high resolution, as the background of our inversion. We will present our recent results achieved through a combination of the bottom-up modeling with BEPS and the top-down modeling based on TM5 driven by offline meteorological fields generated by the European Centre for Medium Range Weather Forecast (ECMFW).

  2. Ecosystem Services Provided by Agricultural Land as Modeled by Broad Scale Geospatial Analysis

    Science.gov (United States)

    Kokkinidis, Ioannis

    Agricultural ecosystems provide multiple services including food and fiber provision, nutrient cycling, soil retention and water regulation. Objectives of the study were to identify and quantify a selection of ecosystem services provided by agricultural land, using existing geospatial tools and preferably free and open source data, such as the Virginia Land Use Evaluation System (VALUES), the North Carolina Realistic Yield Expectations (RYE) database, and the land cover datasets NLCD and CDL. Furthermore I sought to model tradeoffs between provisioning and other services. First I assessed the accuracy of agricultural land in NLCD and CDL over a four county area in eastern Virginia using cadastral parcels. I uncovered issues concerning the definition of agricultural land. The area and location of agriculture saw little change in the 19 years studied. Furthermore all datasets have significant errors of omission (11.3 to 95.1%) and commission (0 to 71.3%). Location of agriculture was used with spatial crop yield databases I created and combined with models I adapted to calculate baseline values for plant biomass, nutrient composition and requirements, land suitability for and potential production of biofuels and the economic impact of agriculture for the four counties. The study area was then broadened to cover 97 counties in eastern Virginia and North Carolina, investigating the potential for increased regional grain production through intensification and extensification of agriculture. Predicted yield from geospatial crop models was compared with produced yield from the NASS Survey of Agriculture. Area of most crops in CDL was similar to that in the Survey of Agriculture, but a yield gap is present for most years, partially due to weather, thus indicating potential for yield increase through intensification. Using simple criteria I quantified the potential to extend agriculture in high yield land in other uses and modeled the changes in erosion and runoff should

  3. Generation of multi annual land use and crop rotation data for regional agro-ecosystem modeling

    Science.gov (United States)

    Waldhoff, G.; Lussem, U.; Sulis, M.; Bareth, G.

    2017-12-01

    For agro-ecosystem modeling on a regional scale with systems like the Community Land Model (CLM), detailed crop type and crop rotation information on the parcel-level is of key importance. Only with this, accurate assessments of the fluxes associated with the succession of crops and their management are possible. However, sophisticated agro-ecosystem modeling for large regions is only feasible at grid resolutions, which are much coarser than the spatial resolution of modern land use maps (usually ca. 30 m). As a result, much of the original information content of the maps has to be dismissed during resampling. Here we present our mapping approach for the Rur catchment (located in the west of Germany), which was developed to address these demands and issues. We integrated remote sensing and geographic information system (GIS) methods to classify multi temporal images of (e.g.) Landsat, RapidEye and Sentinel-2 to generate annual crop maps for the years 2008-2017 at 15 m spatial resolution (accuracy always ca. 90 %). A key aspect of our method is the consideration of crop phenology for the data selection and the analysis. In a GIS, the annul crop maps were integrated to a crop sequence dataset from which the major crop rotations were derived (based on the 10-years). To retain the multi annual crop succession and crop area information at coarser grid resolutions, cell-based land use fractions, including other land use classes were calculated for each year and for various target cell sizes (1-32 arc seconds). The resulting datasets contain the contribution (in percent) of every land use class to each cell. Our results show that parcels with the major crop types can be differentiated with a high accuracy and on an annual basis. The analysis of the crop sequence data revealed a very large number of different crop rotations, but only relatively few crop rotations cover larger areas. This strong diversity emphasizes the importance of information on crop rotations to reduce

  4. Modelling Regional Climate Change Effects On Potential Natural Ecosystems in Sweden

    Energy Technology Data Exchange (ETDEWEB)

    Koca, D.; Smith, B.; Sykes, M.T. [Centre for GeoBiosphere Science, Department of Physical Geography and Ecosystems Analysis, Lund University, Soelvegatan 12, S-223 62 Lund (Sweden)

    2006-10-15

    This study aims to demonstrate the potential of a process-based regional ecosystem model, LPJ-GUESS, driven by climate scenarios generated by a regional climate model system (RCM) to generate predictions useful for assessing effects of climatic and CO2 change on the key ecosystem services of carbon uptake and storage. Scenarios compatible with the A2 and B2 greenhouse gas emission scenarios of the Special Report on Emission Scenarios (SRES) and with boundary conditions from two general circulation models (GCMs) - HadAM3H and ECHAM4/OPYC3 - were used in simulations to explore changes in tree species distributions, vegetation structure, productivity and ecosystem carbon stocks for the late 21st Century, thus accommodating a proportion of the GCM-based and emissions-based uncertainty in future climate development. The simulations represented in this study were of the potential natural vegetation ignoring direct anthropogenic effects. Results suggest that shifts in climatic zones may lead to changes in species distribution and community composition among seven major tree species of natural Swedish forests. All four climate scenarios were associated with an extension of the boreal forest treeline with respect to altitude and latitude. In the boreal and boreo-nemoral zones, the dominance of Norway spruce and to a lesser extent Scots pine was reduced in favour of deciduous broadleaved tree species. The model also predicted substantial increases in vegetation net primary productivity (NPP), especially in central Sweden. Expansion of forest cover and increased local biomass enhanced the net carbon sink over central and northern Sweden, despite increased carbon release through decomposition processes in the soil. In southern Sweden, reduced growing season soil moisture levels counterbalanced the positive effects of a longer growing season and increased carbon supply on NPP, with the result that many areas were converted from a sink to a source of carbon by the late 21st

  5. Modelling Regional Climate Change Effects On Potential Natural Ecosystems in Sweden

    International Nuclear Information System (INIS)

    Koca, D.; Smith, B.; Sykes, M.T.

    2006-01-01

    This study aims to demonstrate the potential of a process-based regional ecosystem model, LPJ-GUESS, driven by climate scenarios generated by a regional climate model system (RCM) to generate predictions useful for assessing effects of climatic and CO2 change on the key ecosystem services of carbon uptake and storage. Scenarios compatible with the A2 and B2 greenhouse gas emission scenarios of the Special Report on Emission Scenarios (SRES) and with boundary conditions from two general circulation models (GCMs) - HadAM3H and ECHAM4/OPYC3 - were used in simulations to explore changes in tree species distributions, vegetation structure, productivity and ecosystem carbon stocks for the late 21st Century, thus accommodating a proportion of the GCM-based and emissions-based uncertainty in future climate development. The simulations represented in this study were of the potential natural vegetation ignoring direct anthropogenic effects. Results suggest that shifts in climatic zones may lead to changes in species distribution and community composition among seven major tree species of natural Swedish forests. All four climate scenarios were associated with an extension of the boreal forest treeline with respect to altitude and latitude. In the boreal and boreo-nemoral zones, the dominance of Norway spruce and to a lesser extent Scots pine was reduced in favour of deciduous broadleaved tree species. The model also predicted substantial increases in vegetation net primary productivity (NPP), especially in central Sweden. Expansion of forest cover and increased local biomass enhanced the net carbon sink over central and northern Sweden, despite increased carbon release through decomposition processes in the soil. In southern Sweden, reduced growing season soil moisture levels counterbalanced the positive effects of a longer growing season and increased carbon supply on NPP, with the result that many areas were converted from a sink to a source of carbon by the late 21st

  6. Terrestrial ecosystem process model Biome-BGCMuSo v4.0: summary of improvements and new modeling possibilities

    Science.gov (United States)

    Hidy, Dóra; Barcza, Zoltán; Marjanović, Hrvoje; Zorana Ostrogović Sever, Maša; Dobor, Laura; Gelybó, Györgyi; Fodor, Nándor; Pintér, Krisztina; Churkina, Galina; Running, Steven; Thornton, Peter; Bellocchi, Gianni; Haszpra, László; Horváth, Ferenc; Suyker, Andrew; Nagy, Zoltán

    2016-12-01

    The process-based biogeochemical model Biome-BGC was enhanced to improve its ability to simulate carbon, nitrogen, and water cycles of various terrestrial ecosystems under contrasting management activities. Biome-BGC version 4.1.1 was used as a base model. Improvements included addition of new modules such as the multilayer soil module, implementation of processes related to soil moisture and nitrogen balance, soil-moisture-related plant senescence, and phenological development. Vegetation management modules with annually varying options were also implemented to simulate management practices of grasslands (mowing, grazing), croplands (ploughing, fertilizer application, planting, harvesting), and forests (thinning). New carbon and nitrogen pools have been defined to simulate yield and soft stem development of herbaceous ecosystems. The model version containing all developments is referred to as Biome-BGCMuSo (Biome-BGC with multilayer soil module; in this paper, Biome-BGCMuSo v4.0 is documented). Case studies on a managed forest, cropland, and grassland are presented to demonstrate the effect of model developments on the simulation of plant growth as well as on carbon and water balance.

  7. The behavior of 89Sr and tritium water (HTO) in a model terrestrial-aquatic ecosystem

    International Nuclear Information System (INIS)

    Zhang Yongxi; Wang Shouxiang; Chen Chuangqun; Sun Zhiming; Huang Dan; Hu Bingmin

    1993-08-01

    The effect of land polluted by 89 Sr on water body and the immigration of HTO from water body to land were studied in a modelling terrestrial-aquatic ecosystem. The results are as follows: (1) The 89 Sr in soil quickly migrated to common bean plants and its concentration in common bean plants was increasing with the time, but the concentration of 89 Sr in soil was exponentially declining with the depth. About 5% of 89 Sr was migrated to water body by rainfall then distributed to other components, and it can be concentrated by aquatics in a certain degree. (2) when HTO entered into the water body, it would migrate to other components of the ecosystem. and the HTO in the pool was linearly decreasing with the time. However, the concentration of HTO in the sediments and aquatics would firstly increase then reached the peak and went down. The tritium of HTO was existed in two forms in the sediments and aquatics, free water (HTO) and bound tritium. HTO was also migrated to the adjacent land soil and absorbed by land crop plants, within one and half months the land system contained 24% of the total tritium in the aquatic system

  8. Cellular automaton for migration in ecosystem: Application of traffic model to a predator-prey system

    Science.gov (United States)

    Nagatani, Takashi; Tainaka, Kei-ichi

    2018-01-01

    In most cases, physicists have studied the migration of biospecies by the use of random walk. In the present article, we apply cellular automaton of traffic model. For simplicity, we deal with an ecosystem contains a prey and predator, and use one-dimensional lattice with two layers. Preys stay on the first layer, but predators uni-directionally move on the second layer. The spatial and temporal evolution is numerically explored. It is shown that the migration has the important effect on populations of both prey and predator. Without migration, the phase transition between a prey-phase and coexisting-phase occurs. In contrast, the phase transition disappears by migration. This is because predator can survive due to migration. We find another phase transition for spatial distribution: in one phase, prey and predator form a stripe pattern of condensation and rarefaction, while in the other phase, they uniformly distribute. The self-organized stripe may be similar to the migration patterns in real ecosystems.

  9. Assessing the protection function of Alpine forest ecosystems using BGC modelling theory

    Science.gov (United States)

    Pötzelsberger, E.; Hasenauer, H.; Petritsch, R.; Pietsch, S. A.

    2009-04-01

    The purpose of this study was to assess the protection function of forests in Alpine areas by modelling the flux dynamics (water, carbon, nutrients) within a watershed as they may depend on the vegetation pattern and forest management impacts. The application case for this study was the catchment Schmittenbach, located in the province of Salzburg. Data available covered the hydrology (rainfall measurements from 1981 to 1998 and runoff measurements at the river Schmittenbach from 1981 to 2005), vegetation dynamics (currently 69% forest, predominantly Norway Spruce). The method of simulating the forest growth and water outflow was validated. For simulations of the key ecosystem processes (e.g. photosynthesis, carbon and nitrogen allocation in the different plant parts, litter fall, mineralisation, tree water uptake, transpiration, rainfall interception, evaporation, snow accumulation and snow melt, outflow of spare water) the biogeochemical ecosystem model Biome-BGC was applied. Relevant model extensions were the tree species specific parameter sets and the improved thinning regime. The model is sensitive to site characteristics and needs daily weather data and information on the atmospheric composition, which makes it sensitive to higher CO2-levels and climate change. For model validation 53 plots were selected covering the full range of site quality and stand age. Tree volume and soil was measured and compared with the respective model results. The outflow for the watershed was predicted by combining the simulated forest-outflow (derived from plot-outflow) with the outflow from the non-forest area (calculated with a fixed outflow/rainfall coefficient (OC)). The analysis of production and water related model outputs indicated that mechanistic modelling can be used as a tool to assess the performance of Alpine protection forests. The Water Use Efficiency (WUE), the ratio of Net primary production (NPP) and Transpiration, was found the highest for juvenile stands (

  10. An improved state-parameter analysis of ecosystem models using data assimilation

    Science.gov (United States)

    Chen, M.; Liu, S.; Tieszen, L.L.; Hollinger, D.Y.

    2008-01-01

    Much of the effort spent in developing data assimilation methods for carbon dynamics analysis has focused on estimating optimal values for either model parameters or state variables. The main weakness of estimating parameter values alone (i.e., without considering state variables) is that all errors from input, output, and model structure are attributed to model parameter uncertainties. On the other hand, the accuracy of estimating state variables may be lowered if the temporal evolution of parameter values is not incorporated. This research develops a smoothed ensemble Kalman filter (SEnKF) by combining ensemble Kalman filter with kernel smoothing technique. SEnKF has following characteristics: (1) to estimate simultaneously the model states and parameters through concatenating unknown parameters and state variables into a joint state vector; (2) to mitigate dramatic, sudden changes of parameter values in parameter sampling and parameter evolution process, and control narrowing of parameter variance which results in filter divergence through adjusting smoothing factor in kernel smoothing algorithm; (3) to assimilate recursively data into the model and thus detect possible time variation of parameters; and (4) to address properly various sources of uncertainties stemming from input, output and parameter uncertainties. The SEnKF is tested by assimilating observed fluxes of carbon dioxide and environmental driving factor data from an AmeriFlux forest station located near Howland, Maine, USA, into a partition eddy flux model. Our analysis demonstrates that model parameters, such as light use efficiency, respiration coefficients, minimum and optimum temperatures for photosynthetic activity, and others, are highly constrained by eddy flux data at daily-to-seasonal time scales. The SEnKF stabilizes parameter values quickly regardless of the initial values of the parameters. Potential ecosystem light use efficiency demonstrates a strong seasonality. Results show that the

  11. Central Puget Sound Ecopath/Ecosim model outputs - Developing food web models for ecosystem-based management applications in Puget Sound

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — This project is developing food web models for ecosystem-based management applications in Puget Sound. It is primarily being done by NMFS FTEs and contractors, in...

  12. Central Puget Sound Ecopath/Ecosim model biological parameters - Developing food web models for ecosystem-based management applications in Puget Sound

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — This project is developing food web models for ecosystem-based management applications in Puget Sound. It is primarily being done by NMFS FTEs and contractors, in...

  13. Modeling dynamics of western juniper under climate change in a semiarid ecosystem

    Science.gov (United States)

    Shrestha, R.; Glenn, N. F.; Flores, A. N.

    2013-12-01

    Modeling future vegetation dynamics in response to climate change and disturbances such as fire relies heavily on model parameterization. Fine-scale field-based measurements can provide the necessary parameters for constraining models at a larger scale. But the time- and labor-intensive nature of field-based data collection leads to sparse sampling and significant spatial uncertainties in retrieved parameters. In this study we quantify the fine-scale carbon dynamics and uncertainty of juniper woodland in the Reynolds Creek Experimental Watershed (RCEW) in southern Idaho, which is a proposed critical zone observatory (CZO) site for soil carbon processes. We leverage field-measured vegetation data along with airborne lidar and timeseries Landsat imagery to initialize a state-and-transition model (VDDT) and a process-based fire-model (FlamMap) to examine the vegetation dynamics in response to stochastic fire events and climate change. We utilize recently developed and novel techniques to measure biomass and canopy characteristics of western juniper at the individual tree scale using terrestrial and airborne laser scanning techniques in RCEW. These fine-scale data are upscaled across the watershed for the VDDT and FlamMap models. The results will immediately improve our understanding of fine-scale dynamics and carbon stocks and fluxes of woody vegetation in a semi-arid ecosystem. Moreover, quantification of uncertainty will also provide a basis for generating ensembles of spatially-explicit alternative scenarios to guide future land management decisions in the region.

  14. A comparison of three models of 137Cs transfer in forest ecosystems

    International Nuclear Information System (INIS)

    Avila, R.; Bergman, R.; Scimone, M.; Fesenko, S.; Sancharova, N.; Moberg, L.

    2001-01-01

    The predictions of three models of 137 Cs transfer in forest ecosystems (FOA, LOGNAT and FORESTLAND) were compared. The scenario for the model-model comparison consisted of an acute dry deposition of 137 Cs over a coniferous forest. The model predictions were subsequently compared (model-data comparison) with values derived from experimental data measured in forests of the Bryansk region in Russia that were contaminated by the Chernobyl accident and that have similar characteristics to the forests described in the scenario. The predictions of radiocaesium levels in the litter-soil layer, berries, needles, wood, whole tree and moose made with the models were in relatively good agreement with each other (within a factor of 1.4-2.9). The best agreement was observed for berries and moose and the worst for wood. There was also good agreement between the model predictions for the same variables and the experimental data (within a factor of 1.2-3.2). In this case, the best agreement was observed for the litter-soil layer and the worst for wood and the whole tree. Overall, at least for the studied scenario and for the first 10 years after deposition, any of the models can be used if the final aim is to estimate average concentrations in different forest components. The agreement between the model predictions worsens with time and there were differences in the form of the time dependencies predicted by the models, especially for wood. This may lead to larger differences between the model predictions and the experimental data for times beyond the period for which data were available for comparison (10 years after the deposition)

  15. The sensitivity of ecosystem service models to choices of input data and spatial resolution

    Science.gov (United States)

    Bagstad, Kenneth J.; Cohen, Erika; Ancona, Zachary H.; McNulty, Steven; Sun, Ge

    2018-01-01

    Although ecosystem service (ES) modeling has progressed rapidly in the last 10–15 years, comparative studies on data and model selection effects have become more common only recently. Such studies have drawn mixed conclusions about whether different data and model choices yield divergent results. In this study, we compared the results of different models to address these questions at national, provincial, and subwatershed scales in Rwanda. We compared results for carbon, water, and sediment as modeled