Determination of Solution Accuracy of Numerical Schemes as Part of Code and Calculation Verification

Energy Technology Data Exchange (ETDEWEB)

Blottner, F.G.; Lopez, A.R.

1998-10-01

This investigation is concerned with the accuracy of numerical schemes for solving partial differential equations used in science and engineering simulation codes. Richardson extrapolation methods for steady and unsteady problems with structured meshes are presented as part of the verification procedure to determine code and calculation accuracy. The local truncation error de- termination of a numerical difference scheme is shown to be a significant component of the veri- fication procedure as it determines the consistency of the numerical scheme, the order of the numerical scheme, and the restrictions on the mesh variation with a non-uniform mesh. Genera- tion of a series of co-located, refined meshes with the appropriate variation of mesh cell size is in- vestigated and is another important component of the verification procedure. The importance of mesh refinement studies is shown to be more significant than just a procedure to determine solu- tion accuracy. It is suggested that mesh refinement techniques can be developed to determine con- sistency of numerical schemes and to determine if governing equations are well posed. The present investigation provides further insight into the conditions and procedures required to effec- tively use Richardson extrapolation with mesh refinement studies to achieve confidence that sim- ulation codes are producing accurate numerical solutions.

A multiscale numerical algorithm for heat transfer simulation between multidimensional CFD and monodimensional system codes

Science.gov (United States)

Chierici, A.; Chirco, L.; Da Vià, R.; Manservisi, S.; Scardovelli, R.

2017-11-01

Nowadays the rapidly-increasing computational power allows scientists and engineers to perform numerical simulations of complex systems that can involve many scales and several different physical phenomena. In order to perform such simulations, two main strategies can be adopted: one may develop a new numerical code where all the physical phenomena of interest are modelled or one may couple existing validated codes. With the latter option, the creation of a huge and complex numerical code is avoided but efficient methods for data exchange are required since the performance of the simulation is highly influenced by its coupling techniques. In this work we propose a new algorithm that can be used for volume and/or boundary coupling purposes for both multiscale and multiphysics numerical simulations. The proposed algorithm is used for a multiscale simulation involving several CFD domains and monodimensional loops. We adopt the overlapping domain strategy, so the entire flow domain is simulated with the system code. We correct the system code solution by matching averaged inlet and outlet fields located at the boundaries of the CFD domains that overlap parts of the monodimensional loop. In particular we correct pressure losses and enthalpy values with source-sink terms that are imposed in the system code equations. The 1D-CFD coupling is a defective one since the CFD code requires point-wise values on the coupling interfaces and the system code provides only averaged quantities. In particular we impose, as inlet boundary conditions for the CFD domains, the mass flux and the mean enthalpy that are calculated by the system code. With this method the mass balance is preserved at every time step of the simulation. The coupling between consecutive CFD domains is not a defective one since with the proposed algorithm we can interpolate the field solutions on the boundary interfaces. We use the MED data structure as the base structure where all the field operations are

Speciation needs in relation with environmental and biological purposes

International Nuclear Information System (INIS)

Moulin, V.; Ansoborlo, E.; Bion, L.; Doizi, D.; Moulin, C.; Cote, G.; Madic, C.; Van Der Lee, J.

2004-01-01

Radionuclides can occur in the environment either through chronic releases of nuclear facilities, or due to incidents or accidents. In order to study their behaviour in the environment (migration, retention, transfer, and in human organisms (metabolism, retention, excretion), it is of prime importance to know their solution chemistry, and more particularly thermodynamic constants, which will allow to determine their speciation. In fact, speciation governs the migration, the bioavailability and the toxicity of elements. Moreover, this knowledge is also of great interest for decorporation or decontamination purposes. In this framework, a CEA working group on speciation has been created in order to share data both on thermodynamic constants and on speciation analytical methods, interesting chemists, environmentalists and biologists. It has been focused, in a first time, on actinides, namely Th, U, Pu, Am, Np, taking into account their most important oxidation states occurring in environmental or biological environments: Th(IV), U(IV, VI), Pu(III, IV, VI), Am(III), Np(IV, V). A particular attention was devoted to the choice of ligands (inorganic and organic) for being the most representative of environmental and biological media. The thermodynamic database used is BASSIST for Base Applied to Speciation in Solution and at Interfaces and Solubility (developed by CEA), in interaction with the code JCHESS. Different examples will be then presented on the selection of data (thermodynamic constants, ligands of interest) through benchmark exercises (case of U(VI), Am(III), Pu(IV)) which will show the lacks or weakness of knowledge. Speciation diagrams will support these discussions. Moreover, analytical methods to determine thermodynamic constants or direct speciation will also be presented and discussed. (author)

Numerical computation of molecular integrals via optimized (vectorized) FORTRAN code

International Nuclear Information System (INIS)

Scott, T.C.; Grant, I.P.; Saunders, V.R.

1997-01-01

The calculation of molecular properties based on quantum mechanics is an area of fundamental research whose horizons have always been determined by the power of state-of-the-art computers. A computational bottleneck is the numerical calculation of the required molecular integrals to sufficient precision. Herein, we present a method for the rapid numerical evaluation of molecular integrals using optimized FORTRAN code generated by Maple. The method is based on the exploitation of common intermediates and the optimization can be adjusted to both serial and vectorized computations. (orig.)

Numerical relativity for D dimensional axially symmetric space-times: Formalism and code tests

International Nuclear Information System (INIS)

Zilhao, Miguel; Herdeiro, Carlos; Witek, Helvi; Nerozzi, Andrea; Sperhake, Ulrich; Cardoso, Vitor; Gualtieri, Leonardo

2010-01-01

The numerical evolution of Einstein's field equations in a generic background has the potential to answer a variety of important questions in physics: from applications to the gauge-gravity duality, to modeling black hole production in TeV gravity scenarios, to analysis of the stability of exact solutions, and to tests of cosmic censorship. In order to investigate these questions, we extend numerical relativity to more general space-times than those investigated hitherto, by developing a framework to study the numerical evolution of D dimensional vacuum space-times with an SO(D-2) isometry group for D≥5, or SO(D-3) for D≥6. Performing a dimensional reduction on a (D-4) sphere, the D dimensional vacuum Einstein equations are rewritten as a 3+1 dimensional system with source terms, and presented in the Baumgarte, Shapiro, Shibata, and Nakamura formulation. This allows the use of existing 3+1 dimensional numerical codes with small adaptations. Brill-Lindquist initial data are constructed in D dimensions and a procedure to match them to our 3+1 dimensional evolution equations is given. We have implemented our framework by adapting the Lean code and perform a variety of simulations of nonspinning black hole space-times. Specifically, we present a modified moving puncture gauge, which facilitates long-term stable simulations in D=5. We further demonstrate the internal consistency of the code by studying convergence and comparing numerical versus analytic results in the case of geodesic slicing for D=5, 6.

Preliminary Study of 1D Thermal-Hydraulic System Analysis Code Using the Higher-Order Numerical Scheme

Energy Technology Data Exchange (ETDEWEB)

Lee, Won Woong; Lee, Jeong Ik [KAIST, Daejeon (Korea, Republic of)

2016-05-15

The existing nuclear system analysis codes such as RELAP5, TRAC, MARS and SPACE use the first-order numerical scheme in both space and time discretization. However, the first-order scheme is highly diffusive and less accurate due to the first order of truncation error. So, the numerical diffusion problem which makes the gradients to be smooth in the regions where the gradients should be steep can occur during the analysis, which often predicts less conservatively than the reality. Therefore, the first-order scheme is not always useful in many applications such as boron solute transport. RELAP7 which is an advanced nuclear reactor system safety analysis code using the second-order numerical scheme in temporal and spatial discretization is being developed by INL (Idaho National Laboratory) since 2011. Therefore, for better predictive performance of the safety of nuclear reactor systems, more accurate nuclear reactor system analysis code is needed for Korea too to follow the global trend of nuclear safety analysis. Thus, this study will evaluate the feasibility of applying the higher-order numerical scheme to the next generation nuclear system analysis code to provide the basis for the better nuclear system analysis code development. The accuracy is enhanced in the spatial second-order scheme and the numerical diffusion problem is alleviated while indicates significantly lower maximum Courant limit and the numerical dispersion issue which produces spurious oscillation and non-physical results in the higher-order scheme. If the spatial scheme is the first order scheme then the temporal second-order scheme provides almost the same result with the temporal firstorder scheme. However, when the temporal second order scheme and the spatial second-order scheme are applied together, the numerical dispersion can occur more severely. For the more in-depth study, the verification and validation of the NTS code built in MATLAB will be conducted further and expanded to handle two

Numerical simulations of inertial confinement fusion hohlraum with LARED-integration code

International Nuclear Information System (INIS)

Li Jinghong; Li Shuanggui; Zhai Chuanlei

2011-01-01

In the target design of the Inertial Confinement Fusion (ICF) program, it is common practice to apply radiation hydrodynamics code to study the key physical processes happened in ICF process, such as hohlraum physics, radiation drive symmetry, capsule implosion physics in the radiation-drive approach of ICF. Recently, many efforts have been done to develop our 2D integrated simulation capability of laser fusion with a variety of optional physical models and numerical methods. In order to effectively integrate the existing codes and to facilitate the development of new codes, we are developing an object-oriented structured-mesh parallel code-supporting infrastructure, called JASMIN. Based on two-dimensional three-temperature hohlraum physics code LARED-H and two-dimensional multi-group radiative transfer code LARED-R, we develop a new generation two-dimensional laser fusion code under the JASMIN infrastructure, which enable us to simulate the whole process of laser fusion from the laser beams' entrance into the hohlraum to the end of implosion. In this paper, we will give a brief description of our new-generation two-dimensional laser fusion code, named LARED-Integration, especially in its physical models, and present some simulation results of holhraum. (author)

Numerical model for two-dimensional hydrodynamics and energy transport. [VECTRA code

Energy Technology Data Exchange (ETDEWEB)

Trent, D.S.

1973-06-01

The theoretical basis and computational procedure of the VECTRA computer program are presented. VECTRA (Vorticity-Energy Code for TRansport Analysis) is designed for applying numerical simulation to a broad range of intake/discharge flows in conjunction with power plant hydrological evaluation. The code computational procedure is based on finite-difference approximation of the vorticity-stream function partial differential equations which govern steady flow momentum transport of two-dimensional, incompressible, viscous fluids in conjunction with the transport of heat and other constituents.

Effects of pH on the speciation of radionuclides in groundwater of beishan area, gansu province, China

International Nuclear Information System (INIS)

Zhanshi, Zhang; Wenbin, Zhou; Xianhua, Fan

2002-01-01

Speciation of radioactive nuclides is one of the most important factors in the study of migration and precipitation of the nuclides related to deep geological disposal of high level radwastes (HLW). Theoretical speciation analysis with thermodynamic equilibrium codes is an effective method. The authors have employed the EQ3NR, a computer program for geochemical aqueous speciation-solubility calculation, to evaluate the speciation of the key nuclides in the groundwater of Beishan Area, a potential area for hosting the HLW Repository of China. The calculated results showed that pH value as well as chemical composition of the water had a great impact on the speciation of key nuclides, such as Np, Pu, Am, U and Th, which would be released from HLW to the groundwater of Beishan Area. In addition, it was found that the speciation of nuclides varied from one to another. However, under alkaline conditions, the speciations were relatively simpler and hydroxyl complexes and carbonate complexes were dominant. (author)

HYDRA-II: A hydrothermal analysis computer code: Volume 1, Equations and numerics

International Nuclear Information System (INIS)

McCann, R.A.

1987-04-01

HYDRA-II is a hydrothermal computer code capable of three-dimensional analysis of coupled conduction, convection, and thermal radiation problems. This code is especially appropriate for simulating the steady-state performance of spent fuel storage systems. The code has been evaluated for this application for the US Department of Energy's Commercial Spent Fuel Management Program. HYDRA-II provides a finite difference solution in Cartesian coordinates to the equations governing the conservation of mass, momentum, and energy. A cylindrical coordinate system may also be used to enclose the Cartesian coordinate system. This exterior coordinate system is useful for modeling cylindrical cask bodies. The difference equations for conservation of momentum are enhanced by the incorporation of directional porosities and permeabilities that aid in modeling solid structures whose dimensions may be smaller than the computational mesh. The equation for conservation of energy permits of modeling of orthotropic physical properties and film resistances. Several automated procedures are available to model radiation transfer within enclosures and from fuel rod to fuel rod. The documentation of HYDRA-II is presented in three separate volumes. This volume, Volume I - Equations and Numerics, describes the basic differential equations, illustrates how the difference equations are formulated, and gives the solution procedures employed. Volume II - User's Manual contains code flow charts, discusses the code structure, provides detailed instructions for preparing an input file, and illustrates the operation of the code by means of a model problem. The final volume, Volume III - Verification/Validation Assessments, presents results of numerical simulations of single- and multiassembly storage systems and comparisons with experimental data. 4 refs

On the Measurements of Numerical Viscosity and Resistivity in Eulerian MHD Codes

Energy Technology Data Exchange (ETDEWEB)

Rembiasz, Tomasz; Obergaulinger, Martin; Cerdá-Durán, Pablo; Aloy, Miguel-Ángel [Departamento de Astronomía y Astrofísica, Universidad de Valencia, C/Dr. Moliner 50, E-46100 Burjassot (Spain); Müller, Ewald, E-mail: tomasz.rembiasz@uv.es [Max-Planck-Institut für Astrophysik, Karl-Schwarzschild-Str. 1, D-85748 Garching (Germany)

2017-06-01

We propose a simple ansatz for estimating the value of the numerical resistivity and the numerical viscosity of any Eulerian MHD code. We test this ansatz with the help of simulations of the propagation of (magneto)sonic waves, Alfvén waves, and the tearing mode (TM) instability using the MHD code Aenus. By comparing the simulation results with analytical solutions of the resistive-viscous MHD equations and an empirical ansatz for the growth rate of TMs, we measure the numerical viscosity and resistivity of Aenus. The comparison shows that the fast magnetosonic speed and wavelength are the characteristic velocity and length, respectively, of the aforementioned (relatively simple) systems. We also determine the dependence of the numerical viscosity and resistivity on the time integration method, the spatial reconstruction scheme and (to a lesser extent) the Riemann solver employed in the simulations. From the measured results, we infer the numerical resolution (as a function of the spatial reconstruction method) required to properly resolve the growth and saturation level of the magnetic field amplified by the magnetorotational instability in the post-collapsed core of massive stars. Our results show that it is most advantageous to resort to ultra-high-order methods (e.g., the ninth-order monotonicity-preserving method) to tackle this problem properly, in particular, in three-dimensional simulations.

Plasmator. A numerical code for simulation of plasma transport in Tokamaks

International Nuclear Information System (INIS)

Guasp, J.

1979-01-01

Plasmator is a flexible monodimensional numerical code for plasma transport in Tokamaks of circular cross-section, it allows neutral particle transport and impurity effects. The code leaves a total freedom in the analytical form of transport coefficients. It has been writen in Fortran-V for the UNIVAC-1100/80 from JEN and allows for the possibility of graphics for radial profiles and temporal evolution of the main plasma magnitudes, as well in three-dimensional as in two-dimensional representation either on a Calcomp plotter or in the printer. (author)

Speciation analysis of radionuclides in the environment - NSK-B SPECIATION project report 2009

International Nuclear Information System (INIS)

Hou, X.; Aldahan, A.; Possnert, G.; Lujaniene, G.; Lehto, J.; Skipperud, L.; Lind, O.C.; Salbu, B.

2009-10-01

The second stage of the NKS-B project SPECIATION was complemented in 2008-2009, which mainly focus on three aspects: (1) Further improvement and development of methods for speciation analysis of radionuclides; (2) Investigation of speciation of some radionuclides in the environment (water, sediments, particles); and (3) Intercomparison excise for speciation analysis of radionuclides in soil and sediment. This report summarizes the work completed in the project partners' laboratories. Method developments include: Development of an rapid and in-suit separation method for the speciation analysis of 129I in seawater samples; Development of a simple method for the speciation analysis of 129I in fresh water and seawater samples; Development of an on-line HPLC-ICP-MS method for the direct speciation analysis of 127I in water and leachate samples; Speciation of radionuclides in water includes: Speciation of 129I and 127I in time-series precipitation samples collected in Denmark 2001-2006 and its application for the investigation of geochemistry and atmospheric chemistry of iodine, Speciation of radionuclides in Ob and Yenisey Rivers, and Speciation of 129I and 127I in Lake Heimdalen water. Speciation of radionuclides in soils and sediments includes: Sequential extraction of radionuclides in sediments and of trace elements in soil samples. Sequential extraction of radionuclides in aerosols and particles has also been performed. Furthermore, sorption experiments have been performed to investigate the association of Pu, Am and Cs with different geological materials. The intercomparison exercises included sequential extraction of Pu, 137Cs, U, Th, and 129I in one soil and one sediment standard reference materials (NIST-4354, IAEA-375) and Pu in sediment collected from the Lake Heimdalen, Norway. (author)

Speciation analysis of radionuclides in the environment - NSK-B SPECIATION project report 2009

Energy Technology Data Exchange (ETDEWEB)

Hou, X. (Technical Univ. of Denmark, Risoe National Lab. for Sustainable Energy, Roskilde (Denmark)); Aldahan, A. (Uppsala Univ., Dept. of Earth Science (Sweden)); Possnert, G. (Uppsala Univ., Tandem Lab. (Sweden)); Lujaniene, G. (Univ. of Helsinki, Lab. of Radiochemistry (Finland)); Lehto, J. (Institute of Physics (Lithuania)); Skipperud, L.; Lind, O.C.; Salbu, B. (Norwegian Univ. of Life Sciences, Isotope Lab., AAs (Norway))

2009-10-15

The second stage of the NKS-B project SPECIATION was complemented in 2008-2009, which mainly focus on three aspects: (1) Further improvement and development of methods for speciation analysis of radionuclides; (2) Investigation of speciation of some radionuclides in the environment (water, sediments, particles); and (3) Intercomparison excise for speciation analysis of radionuclides in soil and sediment. This report summarizes the work completed in the project partners' laboratories. Method developments include: Development of an rapid and in-suit separation method for the speciation analysis of 129I in seawater samples; Development of a simple method for the speciation analysis of 129I in fresh water and seawater samples; Development of an on-line HPLC-ICP-MS method for the direct speciation analysis of 127I in water and leachate samples; Speciation of radionuclides in water includes: Speciation of 129I and 127I in time-series precipitation samples collected in Denmark 2001-2006 and its application for the investigation of geochemistry and atmospheric chemistry of iodine, Speciation of radionuclides in Ob and Yenisey Rivers, and Speciation of 129I and 127I in Lake Heimdalen water. Speciation of radionuclides in soils and sediments includes: Sequential extraction of radionuclides in sediments and of trace elements in soil samples. Sequential extraction of radionuclides in aerosols and particles has also been performed. Furthermore, sorption experiments have been performed to investigate the association of Pu, Am and Cs with different geological materials. The intercomparison exercises included sequential extraction of Pu, 137Cs, U, Th, and 129I in one soil and one sediment standard reference materials (NIST-4354, IAEA-375) and Pu in sediment collected from the Lake Heimdalen, Norway. (author)

The usage of numerical code FLASH in plasma astrophysics

OpenAIRE

BROŽ, Jaroslav

2013-01-01

My diploma thesis is focused on the use of numerical computer codes for simulation in plasma astrophysics. They will learn the basic characteristics of the Sun, a closer focus on the solar corona and the solar corona heating problem. The following section is devoted to simulation software in plasma astrophysics, their installing and displaying the results using the visualization software. In the conclusion is demonstrated using this software on a model example and a simulation that performs s...

PAREX, a numerical code in the service of La Hague plant operations

Energy Technology Data Exchange (ETDEWEB)

Bisson, J.; Huron, P.; Huel, C. [AREVA NC, La Hague Plant, Technical Direction, 50444, Beaumont-Hague (France); Dinh, B. [CEA, Centre de Marcoule, Nuclear Energy Division, Radiochemistry and Process Department, F-30207, Bagnols-sur-Ceze (France)

2016-07-01

The PAREX code developed by the CEA is able to simulate the PUREX process in steady or transient state. From an operator point of view, this numerical code for simulation of liquid-liquid extraction operations is an outstanding tool as an aid for plant operation through process flow sheet optimization, troubleshooting and safety analysis calculations. This paper focuses on two examples. The first concerns the evaluation of the available operating margin of the extraction zone of the first purification cycle flowsheet. The second example concerns a uranium-plutonium splitting operation where the code was used to explain a shift of plutonium concentration in the solvent outlet. (authors)

Improved numerical grid generation techniques for the B2 edge plasma code

International Nuclear Information System (INIS)

Stotler, D.P.; Coster, D.P.

1992-06-01

Techniques used to generate grids for edge fluid codes such as B2 from numerically computed equilibria are discussed. Fully orthogonal, numerically derived grids closely resembling analytically prescribed meshes can be obtained. But, the details of the poloidal field can vary, yielding significantly different plasma parameters in the simulations. The magnitude of these differences is consistent with the predictions of an analytic model of the scrape-off layer. Both numerical and analytic grids are insensitive to changes in their defining parameters. Methods for implementing nonorthogonal boundaries in these meshes are also presented; they differ slightly from those required for fully orthogonal grids

Speciation analysis of radionuclides in the environment. NKS-B speciation project report 2007

International Nuclear Information System (INIS)

Hou, Xiaolin; Aldahan, A.; Possnert, G.; Lujaniene, G.; Lehto, J.; Salbu, B.

2008-07-01

This report describes the work carried out under the NUK-B project SPECIATION 2007. In 2007, the project partners had two meeting in April and November, organized a NUK seminar on speciation and hot particles. SPECIATION 2007 t mainly focused on two issues on speciation (1) further development of speciation methods for radionuclides, and (2) investigation of speciation of radionuclides in environment. The report summarized the work done in partners labs, which includes: (1) Further development on the speciation of 129I and 127I in water samples; (2) Speciation method for 129I and 127I in air; (3) Dynamic system for fractionation of Pu and Am in soil and sediment; (4) Investigation on Re-absorption of Pu during the fractionation of Pu in soil and sediment; (5) Speciation of 129I in North Sea surface water; (6) Partition of 137Cs and 129I in the Nordic lake sediment, pore-water and lake water; (7) Sequential extraction of Pu in soil, sediment and concrete samples, (8) Pu sorption to Mn and Fe oxides in the geological materials, (10) Investigation of the adsorbed species of lanthanides and actinides on clays surfaces. In addition, two review articles on the speciation of plutonium and iodine in environmental are planned to be submitted to an international journal for publication. (au)

Speciation analysis of radionuclides in the environment. NKS-B speciation project report 2007

Energy Technology Data Exchange (ETDEWEB)

Xiaolin Hou (Technical Univ. of Denmark, Risoe National Lab. for Sustainable Energy, Roskilde (Denmark)); Aldahan, A. (Uppsala Univ., Dept. of Earth Science, Uppsala (Sweden)); Possnert, G. (Uppsala Univ., Tandem Lab., Uppsala (Sweden)); Lujaniene, G. (Institute of Physics, Vilnius (Lithuania)); Lehto, J. (Univ. of Helsinki, Dept. of Chemistry, Helsinki (Finland)); Salbu, B. (Norwegian Univ. of Life Sciences (UMB), AAs (Norway))

2008-07-15

This report describes the work carried out under the NUK-B project SPECIATION 2007. In 2007, the project partners had two meeting in April and November, organized a NUK seminar on speciation and hot particles. SPECIATION 2007 t mainly focused on two issues on speciation (1) further development of speciation methods for radionuclides, and (2) investigation of speciation of radionuclides in environment. The report summarized the work done in partners labs, which includes: (1) Further development on the speciation of 129I and 127I in water samples; (2) Speciation method for 129I and 127I in air; (3) Dynamic system for fractionation of Pu and Am in soil and sediment; (4) Investigation on Re-absorption of Pu during the fractionation of Pu in soil and sediment; (5) Speciation of 129I in North Sea surface water; (6) Partition of 137Cs and 129I in the Nordic lake sediment, pore-water and lake water; (7) Sequential extraction of Pu in soil, sediment and concrete samples, (8) Pu sorption to Mn and Fe oxides in the geological materials, (10) Investigation of the adsorbed species of lanthanides and actinides on clays surfaces. In addition, two review articles on the speciation of plutonium and iodine in environmental are planned to be submitted to an international journal for publication. (au)

How common is ecological speciation in plant-feeding insects? A 'Higher' Nematinae perspective

Directory of Open Access Journals (Sweden)

Nyman Tommi

2010-09-01

Full Text Available Abstract Background Ecological speciation is a process in which a transiently resource-polymorphic species divides into two specialized sister lineages as a result of divergent selection pressures caused by the use of multiple niches or environments. Ecology-based speciation has been studied intensively in plant-feeding insects, in which both sympatric and allopatric shifts onto novel host plants could speed up diversification. However, while numerous examples of species pairs likely to have originated by resource shifts have been found, the overall importance of ecological speciation in relation to other, non-ecological speciation modes remains unknown. Here, we apply phylogenetic information on sawflies belonging to the 'Higher' Nematinae (Hymenoptera: Tenthredinidae to infer the frequency of niche shifts in relation to speciation events. Results Phylogenetic trees reconstructed on the basis of DNA sequence data show that the diversification of higher nematines has involved frequent shifts in larval feeding habits and in the use of plant taxa. However, the inferred number of resource shifts is considerably lower than the number of past speciation events, indicating that the majority of divergences have occurred by non-ecological allopatric speciation; based on a time-corrected analysis of sister species, we estimate that a maximum of c. 20% of lineage splits have been triggered by a change in resource use. In addition, we find that postspeciational changes in geographic distributions have led to broad sympatry in many species having identical host-plant ranges. Conclusion Our analysis indicates that the importance of niche shifts for the diversification of herbivorous insects is at present implicitly and explicitly overestimated. In the case of the Higher Nematinae, employing a time correction for sister-species comparisons lowered the proportion of apparent ecology-based speciation events from c. 50-60% to around 20%, but such corrections are

Implicit and semi-implicit schemes in the Versatile Advection Code : numerical tests

NARCIS (Netherlands)

Tóth, G.; Keppens, R.; Bochev, Mikhail A.

1998-01-01

We describe and evaluate various implicit and semi-implicit time integration schemes applied to the numerical simulation of hydrodynamical and magnetohydrodynamical problems. The schemes were implemented recently in the software package Versatile Advection Code, which uses modern shock capturing

Nuclear Reactor Component Code CUPID-I: Numerical Scheme and Preliminary Assessment Results

International Nuclear Information System (INIS)

Cho, Hyoung Kyu; Jeong, Jae Jun; Park, Ik Kyu; Kim, Jong Tae; Yoon, Han Young

2007-12-01

A component scale thermal hydraulic analysis code, CUPID (Component Unstructured Program for Interfacial Dynamics), is being developed for the analysis of components of a nuclear reactor, such as reactor vessel, steam generator, containment, etc. It adopted three-dimensional, transient, two phase and three-field model. In order to develop the numerical schemes for the three-field model, various numerical schemes have been examined including the SMAC, semi-implicit ICE, SIMPLE, Row Scheme and so on. Among them, the ICE scheme for the three-field model was presented in the present report. The CUPID code is utilizing unstructured mesh for the simulation of complicated geometries of the nuclear reactor components. The conventional ICE scheme that was applied to RELAP5 and COBRA-TF, therefore, were modified for the application to the unstructured mesh. Preliminary calculations for the unstructured semi-implicit ICE scheme have been conducted for a verification of the numerical method from a qualitative point of view. The preliminary calculation results showed that the present numerical scheme is robust and efficient for the prediction of phase changes and flow transitions due to a boiling and a flashing. These calculation results also showed the strong coupling between the pressure and void fraction changes. Thus, it is believed that the semi-implicit ICE scheme can be utilized for transient two-phase flows in a component of a nuclear reactor

Nuclear Reactor Component Code CUPID-I: Numerical Scheme and Preliminary Assessment Results

Energy Technology Data Exchange (ETDEWEB)

Cho, Hyoung Kyu; Jeong, Jae Jun; Park, Ik Kyu; Kim, Jong Tae; Yoon, Han Young

2007-12-15

A component scale thermal hydraulic analysis code, CUPID (Component Unstructured Program for Interfacial Dynamics), is being developed for the analysis of components of a nuclear reactor, such as reactor vessel, steam generator, containment, etc. It adopted three-dimensional, transient, two phase and three-field model. In order to develop the numerical schemes for the three-field model, various numerical schemes have been examined including the SMAC, semi-implicit ICE, SIMPLE, Row Scheme and so on. Among them, the ICE scheme for the three-field model was presented in the present report. The CUPID code is utilizing unstructured mesh for the simulation of complicated geometries of the nuclear reactor components. The conventional ICE scheme that was applied to RELAP5 and COBRA-TF, therefore, were modified for the application to the unstructured mesh. Preliminary calculations for the unstructured semi-implicit ICE scheme have been conducted for a verification of the numerical method from a qualitative point of view. The preliminary calculation results showed that the present numerical scheme is robust and efficient for the prediction of phase changes and flow transitions due to a boiling and a flashing. These calculation results also showed the strong coupling between the pressure and void fraction changes. Thus, it is believed that the semi-implicit ICE scheme can be utilized for transient two-phase flows in a component of a nuclear reactor.

Numerical verification of equilibrium chemistry software within nuclear fuel performance codes

International Nuclear Information System (INIS)

Piro, M.H.; Lewis, B.J.; Thompson, W.T.; Simunovic, S.; Besmann, T.M.

2010-01-01

A numerical tool is in an advanced state of development to compute the equilibrium compositions of phases and their proportions in multi-component systems of importance to the nuclear industry. The resulting software is being conceived for direct integration into large multi-physics fuel performance codes, particularly for providing transport source terms, material properties, and boundary conditions in heat and mass transport modules. Consequently, any numerical errors produced in equilibrium chemistry computations will be propagated in subsequent heat and mass transport calculations, thus falsely predicting nuclear fuel behaviour. The necessity for a reliable method to numerically verify chemical equilibrium computations is emphasized by the requirement to handle the very large number of elements necessary to capture the entire fission product inventory. A simple, reliable and comprehensive numerical verification method called the Gibbs Criteria is presented which can be invoked by any equilibrium chemistry solver for quality assurance purposes. (author)

Speciation Analysis of Radionuclides in the Environment - NSK-B SPECIATION project report 2009

DEFF Research Database (Denmark)

Hou, Xiaolin; Aldahan, Ala; Possnert, Göran

. Speciation of radionuclides in soils and sediments includes: Sequential extraction of radionuclides in sediments and of trace elements in soil samples. Sequential extraction of radionuclides in aerosols and particles has also been performed. Further-more, sorption experiments have been performed......, sediments, particles); and (3) Intercomparison excise for speciation analysis of radionu-clides in soil and sediment. This report summarizes the work completed in the project partners’ laboratories, Method developments include: Development of an rapid and in-suit separation method for the speciation...... analysis of 129I in seawater samples; Development of a simple method for the speciation analysis of 129I in fresh water and seawater samples; Development of an on-line HPLC-ICP-MS method for the direct speciation analysis of 127I in water and leachate samples; Speciation of radionuclides in water includes...

A study on the numerical instability of COBRA-series subchannel analysis codes at low-pressure and low-flow conditions

International Nuclear Information System (INIS)

Yoo, Y. J.; Hwnag, T. H.; Kim, K. K.; Ji, S. K.

2001-01-01

The numerical instability at low-pressure and low-flow conditions has been confirmed to be the common problem of the existing COBRA-series subchannel analysis codes. In addition, the range of operating conditions at which the analyses by the codes are impossible has been evaluated. To evaluate the MATRA's inapplicable range of operating conditions of the SMART core that is to be operated at the low flow condition, i.e. about 30% of the flow of the existing commercial pressurized water reactors at the steady-state condition, the analyses of various operating conditions were performed by using several representative COBRA-series subchannel analysis codes including MATRA. TORC of CE, COBRA3CP of Siemens/KWU, COBRA4I of PNL, and MATRA of KAERI were chosen as the subchannel analysis codes to be evaluated. The various operating conditions used in the CHF tests carried out at the Winfrith Establishment of UKAEA were chosen as the conditions to be analyzed. As the result, the numerical instabilities at low-pressure and low-flow conditions occurred in the analyses by all of the codes. It was revealed that the MATRA code, which numerically more stable thatn the other codes, was not able to analyze the conditions of the pressure not more than 100 bar and the mass velocity not more than 300 kg/sec-m 2 . Hereafter it is required to find out the exact reason for the numerical instability of the existing COBRA-series subchannel analysis codes at low-pressure and low-flow conditions and to devise the new method to get over that numerical problem

Development of non-orthogonal and 2-dimensional numerical code TFC2D-BFC for fluid flow

International Nuclear Information System (INIS)

Park, Ju Yeop; In, Wang Kee; Chun, Tae Hyun; Oh, Dong Seok

2000-09-01

The development of algorithm for three dimensional non-orthogonal coordinate system has been made. The algorithm adopts a non-staggered grid system, Cartesian velocity components for independent variables of momentum equations and a SIMPLER algorithm for a pressure correction equation. Except the pressure correction method, the selected grid system and the selected independent variables for momentum equations have been widely used in a commercial code. It is well known that the SIMPLER is superior to the SIMPLE algorithm in the view of convergence rate. Using this algorithm, a two dimensional non-orthogonal numerical code has been completed. The code adopts a structured single square block in a computational domain with a uniform mesh interval. Consequently, any solid body existing in a flow field can be implemented in the numerical code through a blocked-off method which was devised by Patankar

Uranium speciation in plants

International Nuclear Information System (INIS)

Guenther, A.; Bernhard, G.; Geipel, G.; Reich, T.; Rossberg, A.; Nitsche, H.

2003-01-01

Detailed knowledge of the nature of uranium complexes formed after the uptake by plants is an essential prerequisite to describe the migration behavior of uranium in the environment. This study focuses on the determination of uranium speciation after uptake of uranium by lupine plants. For the first time, time-resolved laser-induced fluorescence spectroscopy and X-ray absorption spectroscopy were used to determine the chemical speciation of uranium in plants. Differences were detected between the uranium speciation in the initial solution (hydroponic solution and pore water of soil) and inside the lupine plants. The oxidation state of uranium did not change and remained hexavalent after it was taken up by the lupine plants. The chemical speciation of uranium was identical in the roots, shoot axis, and leaves and was independent of the uranium speciation in the uptake solution. The results indicate that the uranium is predominantly bound as uranyl(VI) phosphate to the phosphoryl groups. Dandelions and lamb's lettuce showed uranium speciation identical to lupine plants. (orig.)

Genomic islands of divergence are not affected by geography of speciation in sunflowers.

Science.gov (United States)

Renaut, S; Grassa, C J; Yeaman, S; Moyers, B T; Lai, Z; Kane, N C; Bowers, J E; Burke, J M; Rieseberg, L H

2013-01-01

Genomic studies of speciation often report the presence of highly differentiated genomic regions interspersed within a milieu of weakly diverged loci. The formation of these speciation islands is generally attributed to reduced inter-population gene flow near loci under divergent selection, but few studies have critically evaluated this hypothesis. Here, we report on transcriptome scans among four recently diverged pairs of sunflower (Helianthus) species that vary in the geographical context of speciation. We find that genetic divergence is lower in sympatric and parapatric comparisons, consistent with a role for gene flow in eroding neutral differences. However, genomic islands of divergence are numerous and small in all comparisons, and contrary to expectations, island number and size are not significantly affected by levels of interspecific gene flow. Rather, island formation is strongly associated with reduced recombination rates. Overall, our results indicate that the functional architecture of genomes plays a larger role in shaping genomic divergence than does the geography of speciation.

Monitoring and preventing numerical oscillations in 3D simulations with coupled Monte Carlo codes

International Nuclear Information System (INIS)

Kotlyar, D.; Shwageraus, E.

2014-01-01

Highlights: • Conventional coupling methods used in all MC codes can be numerically unstable. • Application of new stochastic implicit (SIMP) methods may be required. • The implicit methods require additional computational effort. • Monitoring diagnostic of the numerical stability was developed here. • The procedure allows to create an hybrid explicit–implicit coupling scheme. - Abstract: Previous studies have reported that different schemes for coupling Monte Carlo (MC) neutron transport with burnup and thermal hydraulic feedbacks may potentially be numerically unstable. This issue can be resolved by application of implicit methods, such as the stochastic implicit mid-point (SIMP) methods. In order to assure numerical stability, the new methods do require additional computational effort. The instability issue however, is problem-dependent and does not necessarily occur in all cases. Therefore, blind application of the unconditionally stable coupling schemes, and thus incurring extra computational costs, may not always be necessary. In this paper, we attempt to develop an intelligent diagnostic mechanism, which will monitor numerical stability of the calculations and, if necessary, switch from simple and fast coupling scheme to more computationally expensive but unconditionally stable one. To illustrate this diagnostic mechanism, we performed a coupled burnup and TH analysis of a single BWR fuel assembly. The results indicate that the developed algorithm can be easily implemented in any MC based code for monitoring of numerical instabilities. The proposed monitoring method has negligible impact on the calculation time even for realistic 3D multi-region full core calculations

Numerical code to determine the particle trapping region in the LISA machine

International Nuclear Information System (INIS)

Azevedo, M.T. de; Raposo, C.C. de; Tomimura, A.

1984-01-01

A numerical code is constructed to determine the trapping region in machine like LISA. The variable magnetic field is two deimensional and is coupled to the Runge-Kutta through the Tchebichev polynomial. Various particle orbits including particle interactions were analysed. Beside this, a strong electric field is introduced to see the possible effects happening inside the plasma. (Author) [pt

Numerical scheme of WAHA code for simulation of fast transients in piping systems

International Nuclear Information System (INIS)

Iztok Tiselj

2005-01-01

Full text of publication follows: A research project of the 5. EU program entitled 'Two-phase flow water hammer transients and induced loads on materials and structures of nuclear power plants' (WAHA loads) has been initiated in Fall 2000 and ended in Spring 2004. Numerical scheme used in WAHA code is responsibility of 'Jozef Stefan Institute and is briefly described in the present work. Mathematical model is based on a 6-equation two-fluid model for inhomogeneous non-equilibrium two-phase flow, which can be written in vectorial form as: A δΨ-vector/δt + B δΨ-vector/δx = S-vector. Hyperbolicity of the equations is a prerequisite and is ensured with virtual mass term and interfacial pressure term, however, equations are not unconditionally hyperbolic. Flow-regime map used in WAHA code consists of dispersed, and horizontally stratified flow correlations. The closure laws describe interface heat and mass transfer (condensation model, flashing...), the inter-phase friction, and wall friction. For the modeling of water hammer additional terms due to the pipe elasticity are considered. For the calculation of the thermodynamic state a new set of water properties subroutines was created. Numerical scheme of the WAHA code is based on Godunov characteristic upwind methods. Advanced numerical methods based on high-resolution shock-capturing schemes, which were originally developed for high-speed gas dynamics are used. These schemes produce solutions with a substantially reduced numerical diffusion and allow the accurate modeling of flow discontinuities. Code is using non-conservative variables Ψ-vector = (p, α, ν f , ν g , u f , u g ), however, according to current experience, the non-conservation is not a major problem for the fast transients like water hammers. The following operator splitting is used in the code: 1) Convection and non-relaxation source terms: A δΨ-vector/δt + B δΨ-vector/δx S-vector non relaxation 2) Relaxation (inter-phase exchange) source

Numerical algorithms for intragranular diffusional fission gas release incorporated in the Transuranus code

International Nuclear Information System (INIS)

Lassmann, K.

2002-01-01

Complicated physical processes govern diffusional fission gas release in nuclear fuels. In addition to the physical problem there exists a numerical problem, as some solutions of the underlying diffusion equation contain numerical errors that by far exceed the physical details. In this paper the two algorithms incorporated in the TRANSURANUS code, the URGAS and the new FORMAS algorithm are compared. The previously reported deficiency of the most elegant and mathematically sound FORMAS algorithm at low release could be overcome. Both algorithms are simple, fast, without numerical problems, insensitive to time step lengths and well balanced over the entire range of fission gas release. They can be made available on request as FORTRAN subroutines. (author)

Integration of the metal ion charge neutralization model for humic acid complexation into the geochemical speciation code EQ3/6

International Nuclear Information System (INIS)

Brendler, V.

2002-01-01

Geochemical modeling often requires the consideration of humics as major complexing agent and colloid. The metal ion charge neutralization model can handle respective interactions and has therefore been integrated into the speciation software EQ3/6. An application showing the influence of the pH-dependence of the loading capacity on actinide speciation is given. (orig.)

A Parallel Numerical Micromagnetic Code Using FEniCS

Science.gov (United States)

Nagy, L.; Williams, W.; Mitchell, L.

2013-12-01

Many problems in the geosciences depend on understanding the ability of magnetic minerals to provide stable paleomagnetic recordings. Numerical micromagnetic modelling allows us to calculate the domain structures found in naturally occurring magnetic materials. However the computational cost rises exceedingly quickly with respect to the size and complexity of the geometries that we wish to model. This problem is compounded by the fact that the modern processor design no longer focuses on the speed at which calculations are performed, but rather on the number of computational units amongst which we may distribute our calculations. Consequently to better exploit modern computational resources our micromagnetic simulations must "go parallel". We present a parallel and scalable micromagnetics code written using FEniCS. FEniCS is a multinational collaboration involving several institutions (University of Cambridge, University of Chicago, The Simula Research Laboratory, etc.) that aims to provide a set of tools for writing scientific software; in particular software that employs the finite element method. The advantages of this approach are the leveraging of pre-existing projects from the world of scientific computing (PETSc, Trilinos, Metis/Parmetis, etc.) and exposing these so that researchers may pose problems in a manner closer to the mathematical language of their domain. Our code provides a scriptable interface (in Python) that allows users to not only run micromagnetic models in parallel, but also to perform pre/post processing of data.

MODELING MONOMETHYLMERCURY AND TRIBUTYLTIN SPECIATION WITH EPA'S GEOCHEMICAL SPECIATION MODEL MINTEQA2

Science.gov (United States)

Given the complexity of the various, simultaneous (and competing) equilibrium reactions governing the speciation of ionic species in aquatic systems, EPA has developed and distributed the geochemical speciation model MINTEQA2 (Brown and Allison, 1987, Allison et al., 1991; Hydrog...

Parallelization of a numerical simulation code for isotropic turbulence

International Nuclear Information System (INIS)

Sato, Shigeru; Yokokawa, Mitsuo; Watanabe, Tadashi; Kaburaki, Hideo.

1996-03-01

A parallel pseudospectral code which solves the three-dimensional Navier-Stokes equation by direct numerical simulation is developed and execution time, parallelization efficiency, load balance and scalability are evaluated. A vector parallel supercomputer, Fujitsu VPP500 with up to 16 processors is used for this calculation for Fourier modes up to 256x256x256 using 16 processors. Good scalability for number of processors is achieved when number of Fourier mode is fixed. For small Fourier modes, calculation time of the program is proportional to NlogN which is ideal complexity of calculation for 3D-FFT on vector parallel processors. It is found that the calculation performance decreases as the increase of the Fourier modes. (author)

Complementary arsenic speciation methods: A review

Energy Technology Data Exchange (ETDEWEB)

Nearing, Michelle M., E-mail: michelle.nearing@rmc.ca; Koch, Iris, E-mail: koch-i@rmc.ca; Reimer, Kenneth J., E-mail: reimer-k@rmc.ca

2014-09-01

The toxicity of arsenic greatly depends on its chemical form and oxidation state (speciation) and therefore accurate determination of arsenic speciation is a crucial step in understanding its chemistry and potential risk. High performance liquid chromatography with inductively coupled mass spectrometry (HPLC–ICP-MS) is the most common analysis used for arsenic speciation but it has two major limitations: it relies on an extraction step (usually from a solid sample) that can be incomplete or alter the arsenic compounds; and it provides no structural information, relying on matching sample peaks to standard peaks. The use of additional analytical methods in a complementary manner introduces the ability to address these disadvantages. The use of X-ray absorption spectroscopy (XAS) with HPLC–ICP-MS can be used to identify compounds not extracted for HPLC–ICP-MS and provide minimal processing steps for solid state analysis that may help preserve labile compounds such as those containing arsenic-sulfur bonds, which can degrade under chromatographic conditions. On the other hand, HPLC–ICP-MS is essential in confirming organoarsenic compounds with similar white line energies seen by using XAS, and identifying trace arsenic compounds that are too low to be detected by XAS. The complementary use of electrospray mass spectrometry (ESI–MS) with HPLC–ICP-MS provides confirmation of arsenic compounds identified during the HPLC–ICP-MS analysis, identification of unknown compounds observed during the HPLC–ICP-MS analysis and further resolves HPLC–ICP-MS by identifying co-eluting compounds. In the complementary use of HPLC–ICP-MS and ESI–MS, HPLC–ICP-MS helps to focus the ESI–MS selection of ions. Numerous studies have shown that the information obtained from HPLC–ICP-MS analysis can be greatly enhanced by complementary approaches. - Highlights: • HPLC–ICP-MS is the most common method used for arsenic speciation. • HPLC limitations include

Complementary arsenic speciation methods: A review

International Nuclear Information System (INIS)

Nearing, Michelle M.; Koch, Iris; Reimer, Kenneth J.

2014-01-01

The toxicity of arsenic greatly depends on its chemical form and oxidation state (speciation) and therefore accurate determination of arsenic speciation is a crucial step in understanding its chemistry and potential risk. High performance liquid chromatography with inductively coupled mass spectrometry (HPLC–ICP-MS) is the most common analysis used for arsenic speciation but it has two major limitations: it relies on an extraction step (usually from a solid sample) that can be incomplete or alter the arsenic compounds; and it provides no structural information, relying on matching sample peaks to standard peaks. The use of additional analytical methods in a complementary manner introduces the ability to address these disadvantages. The use of X-ray absorption spectroscopy (XAS) with HPLC–ICP-MS can be used to identify compounds not extracted for HPLC–ICP-MS and provide minimal processing steps for solid state analysis that may help preserve labile compounds such as those containing arsenic-sulfur bonds, which can degrade under chromatographic conditions. On the other hand, HPLC–ICP-MS is essential in confirming organoarsenic compounds with similar white line energies seen by using XAS, and identifying trace arsenic compounds that are too low to be detected by XAS. The complementary use of electrospray mass spectrometry (ESI–MS) with HPLC–ICP-MS provides confirmation of arsenic compounds identified during the HPLC–ICP-MS analysis, identification of unknown compounds observed during the HPLC–ICP-MS analysis and further resolves HPLC–ICP-MS by identifying co-eluting compounds. In the complementary use of HPLC–ICP-MS and ESI–MS, HPLC–ICP-MS helps to focus the ESI–MS selection of ions. Numerous studies have shown that the information obtained from HPLC–ICP-MS analysis can be greatly enhanced by complementary approaches. - Highlights: • HPLC–ICP-MS is the most common method used for arsenic speciation. • HPLC limitations include

Bad-good constraints on a polarity correspondence account for the spatial-numerical association of response codes (SNARC) and markedness association of response codes (MARC) effects.

Science.gov (United States)

Leth-Steensen, Craig; Citta, Richie

2016-01-01

Performance in numerical classification tasks involving either parity or magnitude judgements is quicker when small numbers are mapped onto a left-sided response and large numbers onto a right-sided response than for the opposite mapping (i.e., the spatial-numerical association of response codes or SNARC effect). Recent research by Gevers et al. [Gevers, W., Santens, S., Dhooge, E., Chen, Q., Van den Bossche, L., Fias, W., & Verguts, T. (2010). Verbal-spatial and visuospatial coding of number-space interactions. Journal of Experimental Psychology: General, 139, 180-190] suggests that this effect also arises for vocal "left" and "right" responding, indicating that verbal-spatial coding has a role to play in determining it. Another presumably verbal-based, spatial-numerical mapping phenomenon is the linguistic markedness association of response codes (MARC) effect whereby responding in parity tasks is quicker when odd numbers are mapped onto left-sided responses and even numbers onto right-sided responses. A recent account of both the SNARC and MARC effects is based on the polarity correspondence principle [Proctor, R. W., & Cho, Y. S. (2006). Polarity correspondence: A general principle for performance of speeded binary classification tasks. Psychological Bulletin, 132, 416-442]. This account assumes that stimulus and response alternatives are coded along any number of dimensions in terms of - and + polarities with quicker responding when the polarity codes for the stimulus and the response correspond. In the present study, even-odd parity judgements were made using either "left" and "right" or "bad" and "good" vocal responses. Results indicated that a SNARC effect was indeed present for the former type of vocal responding, providing further evidence for the sufficiency of the verbal-spatial coding account for this effect. However, the decided lack of an analogous SNARC-like effect in the results for the latter type of vocal responding provides an important

Present capabilities and new developments in antenna modeling with the numerical electromagnetics code NEC

Energy Technology Data Exchange (ETDEWEB)

Burke, G.J.

1988-04-08

Computer modeling of antennas, since its start in the late 1960's, has become a powerful and widely used tool for antenna design. Computer codes have been developed based on the Method-of-Moments, Geometrical Theory of Diffraction, or integration of Maxwell's equations. Of such tools, the Numerical Electromagnetics Code-Method of Moments (NEC) has become one of the most widely used codes for modeling resonant sized antennas. There are several reasons for this including the systematic updating and extension of its capabilities, extensive user-oriented documentation and accessibility of its developers for user assistance. The result is that there are estimated to be several hundred users of various versions of NEC world wide. 23 refs., 10 figs.

Hybridization and genome evolution I: The role of contingency during hybrid speciation

Directory of Open Access Journals (Sweden)

Fabrice EROUKHMANOFF, Richard I. BAILEY, Glenn-Peter SæTRE

2013-10-01

Full Text Available Homoploid hybrid speciation (HHS involves the recombination of two differentiated genomes into a novel, functional one without a change in chromosome number. Theoretically, there are numerous ways for two parental genomes to recombine. Hence, chance may play a large role in the formation of a hybrid species. If these genome combinations can evolve rapidly following hybridization and sympatric situations are numerous, recurrent homoploid hybrid speciation is a possibility. We argue that three different, but not mutually exclusive, types of contingencies could influence this process. First, many of these “hopeful monsters” of recombinant parent genotypes would likely have low fitness. Only specific combinations of parental genomic contributions may produce viable, intra-fertile hybrid species able to accommodate potential constraints arising from intragenomic conflict. Second, ecological conditions (competition, geography of the contact zones or the initial frequency of both parent species might favor different outcomes ranging from sympatric coexistence to the formation of hybrid swarms and ultimately hybrid speciation. Finally, history may also play an important role in promoting or constraining recurrent HHS if multiple hybridization events occur sequentially and parental divergence or isolation differs along this continuum. We discuss under which conditions HHS may occur multiple times in parallel and to what extent recombination and selection may fuse the parent genomes in the same or different ways. We conclude by examining different approaches that might help to solve this intriguing evolutionary puzzle [Current Zoology 59 (5: 667-674, 2013].　

Numerical simulation of a short RFQ resonator using the MAFIA codes

International Nuclear Information System (INIS)

Wang, H.; Ben-Zvi, I.; Jain, A.; Paul, P.; Lombardi, A.

1991-01-01

The electrical characteristics of a short (2βλ=0.4 m) resonator with large modulation (m=4) have been studied using the three dimensional codes, MAFIA. The complete resonator, including the modulated electrodes and a complex support structure, has been simulated using ∼ 350,000 mesh points. Important characteristics studied include the resonant frequency, electric and magnetic fields distributions, quality factor and stored energy. The results of the numerical simulations are compared with the measurements of an actual resonator and analytical approximations. 7 refs., 3 figs., 1 tab

The development of high performance numerical simulation code for transient groundwater flow and reactive solute transport problems based on local discontinuous Galerkin method

International Nuclear Information System (INIS)

Suzuki, Shunichi; Motoshima, Takayuki; Naemura, Yumi; Kubo, Shin; Kanie, Shunji

2009-01-01

The authors develop a numerical code based on Local Discontinuous Galerkin Method for transient groundwater flow and reactive solute transport problems in order to make it possible to do three dimensional performance assessment on radioactive waste repositories at the earliest stage possible. Local discontinuous Galerkin Method is one of mixed finite element methods which are more accurate ones than standard finite element methods. In this paper, the developed numerical code is applied to several problems which are provided analytical solutions in order to examine its accuracy and flexibility. The results of the simulations show the new code gives highly accurate numeric solutions. (author)

Arsenic, Antimony, Chromium, and Thallium Speciation in Water and Sediment Samples with the LC-ICP-MS Technique

Directory of Open Access Journals (Sweden)

Magdalena Jabłońska-Czapla

2015-01-01

Full Text Available Chemical speciation is a very important subject in the environmental protection, toxicology, and chemical analytics due to the fact that toxicity, availability, and reactivity of trace elements depend on the chemical forms in which these elements occur. Research on low analyte levels, particularly in complex matrix samples, requires more and more advanced and sophisticated analytical methods and techniques. The latest trends in this field concern the so-called hyphenated techniques. Arsenic, antimony, chromium, and (underestimated thallium attract the closest attention of toxicologists and analysts. The properties of those elements depend on the oxidation state in which they occur. The aim of the following paper is to answer the question why the speciation analytics is so important. The paper also provides numerous examples of the hyphenated technique usage (e.g., the LC-ICP-MS application in the speciation analysis of chromium, antimony, arsenic, or thallium in water and bottom sediment samples. An important issue addressed is the preparation of environmental samples for speciation analysis.

Synthesis of the scientific French speaking days on numerical codes in radiation protection, in radio physics and in dosimetry

International Nuclear Information System (INIS)

Paul, D.; Makovicka, L.; Ricard, M.

2005-01-01

Synthesis of the scientific French speaking days on numerical codes in radiation protection, in radio-physics and in dosimetry. The paper carries the title of 'French speaking' scientific days co-organized on October 2-3, 2003 in Sochaux by the SFRP, SFPM and FIRAM societies. It has for objective to establish the scientific balance sheet of this international event, to give the synthesis of current tendencies in the field of the development and of the use of the numerical codes in radiation protection, in radio-physics and in dosimetry. (author)

Arsenic Speciation in Groundwater: Role of Thioanions

Science.gov (United States)

The behavior of arsenic in groundwater environments is fundamentally linked to its speciation. Understanding arsenic speciation is important because chemical speciation impacts reactivity, bioavailability, toxicity, and transport and fate processes. In aerobic environments arsen...

The rate test of speciation: estimating the likelihood of non-allopatric speciation from reproductive isolation rates in Drosophila.

Science.gov (United States)

Yukilevich, Roman

2014-04-01

Among the most debated subjects in speciation is the question of its mode. Although allopatric (geographical) speciation is assumed the null model, the importance of parapatric and sympatric speciation is extremely difficult to assess and remains controversial. Here I develop a novel approach to distinguish these modes of speciation by studying the evolution of reproductive isolation (RI) among taxa. I focus on the Drosophila genus, for which measures of RI are known. First, I incorporate RI into age-range correlations. Plots show that almost all cases of weak RI are between allopatric taxa whereas sympatric taxa have strong RI. This either implies that most reproductive isolation (RI) was initiated in allopatry or that RI evolves too rapidly in sympatry to be captured at incipient stages. To distinguish between these explanations, I develop a new "rate test of speciation" that estimates the likelihood of non-allopatric speciation given the distribution of RI rates in allopatry versus sympatry. Most sympatric taxa were found to have likely initiated RI in allopatry. However, two putative candidate species pairs for non-allopatric speciation were identified (5% of known Drosophila). In total, this study shows how using RI measures can greatly inform us about the geographical mode of speciation in nature. © 2013 The Author(s). Evolution © 2013 The Society for the Study of Evolution.

Integrated Numerical Experiments (INEX) and the Free-Electron Laser Physical Process Code (FELPPC)

International Nuclear Information System (INIS)

Thode, L.E.; Chan, K.C.D.; Schmitt, M.J.; McKee, J.; Ostic, J.; Elliott, C.J.; McVey, B.D.

1990-01-01

The strong coupling of subsystem elements, such as the accelerator, wiggler, and optics, greatly complicates the understanding and design of a free electron laser (FEL), even at the conceptual level. To address the strong coupling character of the FEL the concept of an Integrated Numerical Experiment (INEX) was proposed. Unique features of the INEX approach are consistency and numerical equivalence of experimental diagnostics. The equivalent numerical diagnostics mitigates the major problem of misinterpretation that often occurs when theoretical and experimental data are compared. The INEX approach has been applied to a large number of accelerator and FEL experiments. Overall, the agreement between INEX and the experiments is very good. Despite the success of INEX, the approach is difficult to apply to trade-off and initial design studies because of the significant manpower and computational requirements. On the other hand, INEX provides a base from which realistic accelerator, wiggler, and optics models can be developed. The Free Electron Laser Physical Process Code (FELPPC) includes models developed from INEX, provides coupling between the subsystem models, and incorporates application models relevant to a specific trade-off or design study. In other words, FELPPC solves the complete physical process model using realistic physics and technology constraints. Because FELPPC provides a detailed design, a good estimate for the FEL mass, cost, and size can be made from a piece-part count of the FEL. FELPPC requires significant accelerator and FEL expertise to operate. The code can calculate complex FEL configurations including multiple accelerator and wiggler combinations

Validations of BWR nuclear design code using ABWR MOX numerical benchmark problems

International Nuclear Information System (INIS)

Takano, Shou; Sasagawa, Masaru; Yamana, Teppei; Ikehara, Tadashi; Yanagisawa, Naoki

2017-01-01

BWR core design code package (the HINES assembly code and the PANACH core simulator), being used for full MOX-ABWR core design, has been benchmarked against the high-fidelity numerical solutions as references, for the purpose of validating its capability of predicting the BWR core design parameters systematically from UO 2 to 100% MOX cores. The reference solutions were created by whole core critical calculations using MCNPs with the precisely modeled ABWR cores both in hot and cold conditions at BOC and EOC of the equilibrium cycle. A Doppler-Broadening Rejection Correction (DCRB) implemented MCNP5-1.4 with ENDF/B-VII.0 was mainly used to evaluate the core design parameters, except for effective delayed neutron fraction (β eff ) and prompt neutron lifetime (l) with MCNP6.1. The discrepancies in the results between the design codes HINES-PANACH and MCNPs for the core design parameters such as the bundle powers, hot pin powers, control rod worth, boron worth, void reactivity, Doppler reactivity, β eff and l, are almost within target accuracy, leading to the conclusion that HINES-PANACH has sufficient fidelity for application to full MOX-ABWR core design. (author)

Numerical analysis on ingress-of-coolant events in fusion reactors with TRAC-PF1 code

International Nuclear Information System (INIS)

Ose, Yasuo; Takase, Kazuyuki; Akimoto, Hajime

2000-01-01

As for accident events related with thermal-hydraulics, in a fusion experimental reactor an ingress-of-coolant event (ICE) and a loss-of-vacuum-accident event (LOVA) should be considered. An integrated ICE/LOVA test apparatus is under planning in order to estimate quantitatively heat transfer and fluid flow characteristics under ICE and LOVA events. This study was carried out to predict numerically the thermal-hydraulic characteristics in fusion reactors at the ICE events before construction of the integrated ICE/LOVA test apparatus. The TRAC-PF1 code, which was originally developed for the thermal-hydraulic safety analysis in light water reactors, was used. The numerical analyses were performed for two kinds of system configuration with/without a pressure-suppression tank:the former for is investigation of the pressure rise characteristics and two-phase flow behavior; the latter for estimation of an effect of the pressure reduction due to the pressure-suppression tank. From the present analytical results, effects of the ingress water flow rate and vessel temperatures on the pressure rise ware clarified quantitatively. Furthermore, the pressure-rise suppression effect due to the vapor condensation in the pressure-suppression tank was predicted numerically. In addition, the useful information regarding to the design of the integrated ICE/LOVA test apparatus and the knowledge with respect to the effective usage of the TRAC-PF1 code were obtained through the present numerical study. (author)

Version 4. 00 of the MINTEQ geochemical code

Energy Technology Data Exchange (ETDEWEB)

Eary, L.E.; Jenne, E.A.

1992-09-01

The MINTEQ code is a thermodynamic model that can be used to calculate solution equilibria for geochemical applications. Included in the MINTEQ code are formulations for ionic speciation, ion exchange, adsorption, solubility, redox, gas-phase equilibria, and the dissolution of finite amounts of specified solids. Since the initial development of the MINTEQ geochemical code, a number of undocumented versions of the source code and data files have come into use at the Pacific Northwest Laboratory (PNL). This report documents these changes, describes source code modifications made for the Aquifer Thermal Energy Storage (ATES) program, and provides comprehensive listings of the data files. A version number of 4.00 has been assigned to the MINTEQ source code and the individual data files described in this report.

Version 4.00 of the MINTEQ geochemical code

Energy Technology Data Exchange (ETDEWEB)

Eary, L.E.; Jenne, E.A.

1992-09-01

The MINTEQ code is a thermodynamic model that can be used to calculate solution equilibria for geochemical applications. Included in the MINTEQ code are formulations for ionic speciation, ion exchange, adsorption, solubility, redox, gas-phase equilibria, and the dissolution of finite amounts of specified solids. Since the initial development of the MINTEQ geochemical code, a number of undocumented versions of the source code and data files have come into use at the Pacific Northwest Laboratory (PNL). This report documents these changes, describes source code modifications made for the Aquifer Thermal Energy Storage (ATES) program, and provides comprehensive listings of the data files. A version number of 4.00 has been assigned to the MINTEQ source code and the individual data files described in this report.

Validation of Numerical Schemes in a Thermal-Hydraulic Analysis Code for a Natural Convection Heat Transfer of a Molten Pool

International Nuclear Information System (INIS)

Kim, Jong Tae; Ha, Kwang Soon; Kim, Hwan Yeol; Park, Rae Joon; Song, Jin Ho

2010-01-01

, unsteady turbulence models based on filtered or volume-averaged governing equations have been applied for the turbulent natural convection heat transfer. Tran et al. used large eddy simulation (LES) for the analysis of molten corium coolability. The numerical instability is related to a gravitational force of the molten corium. A staggered grid method on an orthogonal structured grid is used to prohibit a pressure oscillation in the numerical solution. But it is impractical to use the structured grid for a partially filled spherical pool, a cone-type pool or triangular pool. An unstructured grid is an alternative for the nonrectangular pools. In order to remove the checkerboard- like pressure oscillation on the unstructured grid, some special interpolation scheme is required. In order to evaluate in-vessel coolability of the molten corium for a pressurized water reactor (PWR), thermo-hydraulic analysis code LILAC had been developed. LILAC has a capability of multi-layered conjugate heat transfer with melt solidification. A solution domain can be 2-dimensional, axisymmetric, and 3-dimensional. LILAC is based on the unstructured mesh technology to discretized non-rectangular pool geometry. Because of too limited man-power to maintain the code, it becomes more and more difficult to implement new physical and numerical models in the code along with increased complication of the code. Recently, open source CFD code OpenFOAM has been released and applied to many academic and engineering areas. OpenFOAM is based on the very similar numerical schemes to the LILAC code. It has many physical and numerical models for multi-physics analysis. And because it is based on object-oriented programming, it is known that new models can be easily implemented and is very fast with a lower possibility of coding errors. This is a very attractive feature for the development, validation and maintenance of an analysis code. On the contrary to commercial CFD codes, it is possible to modify and add

MIG version 0.0 model interface guidelines: Rules to accelerate installation of numerical models into any compliant parent code

Energy Technology Data Exchange (ETDEWEB)

Brannon, R.M.; Wong, M.K.

1996-08-01

A set of model interface guidelines, called MIG, is presented as a means by which any compliant numerical material model can be rapidly installed into any parent code without having to modify the model subroutines. Here, {open_quotes}model{close_quotes} usually means a material model such as one that computes stress as a function of strain, though the term may be extended to any numerical operation. {open_quotes}Parent code{close_quotes} means a hydrocode, finite element code, etc. which uses the model and enforces, say, the fundamental laws of motion and thermodynamics. MIG requires the model developer (who creates the model package) to specify model needs in a standardized but flexible way. MIG includes a dictionary of technical terms that allows developers and parent code architects to share a common vocabulary when specifying field variables. For portability, database management is the responsibility of the parent code. Input/output occurs via structured calling arguments. As much model information as possible (such as the lists of required inputs, as well as lists of precharacterized material data and special needs) is supplied by the model developer in an ASCII text file. Every MIG-compliant model also has three required subroutines to check data, to request extra field variables, and to perform model physics. To date, the MIG scheme has proven flexible in beta installations of a simple yield model, plus a more complicated viscodamage yield model, three electromechanical models, and a complicated anisotropic microcrack constitutive model. The MIG yield model has been successfully installed using identical subroutines in three vectorized parent codes and one parallel C++ code, all predicting comparable results. By maintaining one model for many codes, MIG facilitates code-to-code comparisons and reduces duplication of effort, thereby reducing the cost of installing and sharing models in diverse new codes.

Rapid allopatric speciation in logperch darters (Percidae: Percina).

Science.gov (United States)

Near, Thomas J; Benard, Michael F

2004-12-01

Theory predicts that clades diversifying via sympatric speciation will exhibit high diversification rates. However, the expected rate of diversification in clades characterized by allopatric speciation is less clear. Previous studies have documented significantly higher speciation rates in freshwater fish clades diversifying via sympatric versus allopatric modes, leading to suggestions that the geographic pattern of speciation can be inferred solely from knowledge of the diversification rate. We tested this prediction using an example from darters, a clade of approximately 200 species of freshwater fishes endemic to eastern North America. A resolved phylogeny was generated using mitochondrial DNA gene sequences for logperches, a monophyletic group of darters composed of 10 recognized species. Divergence times among logperch species were estimated using a fossil calibrated molecular clock in centrarchid fishes, and diversification rates in logperches were estimated using several methods. Speciation events in logperches are recent, extending from 4.20 +/- 1.06 million years ago (mya) to 0.42 +/- 0.22 mya, with most speciation events occurring in the Pleistocene. Diversification rates are high in logperches, at some nodes exceeding rates reported for well-studied adaptive radiations such as Hawaiian silverswords. The geographic pattern of speciation in logperches was investigated by examining the relationship between degree of sympatry and the absolute age of the contrast, with the result that diversification in logperches appears allopatric. The very high diversification rate observed in the logperch phylogeny is more similar to freshwater fish clades thought to represent examples of sympatric speciation than to clades representing allopatric speciation. These results demonstrate that the geographic mode of speciation for a clade cannot be inferred from the diversification rate. The empirical observation of high diversification rates in logperches demonstrates that

US EPA's SPECIATE 4.4 Database: Development and Uses

Science.gov (United States)

SPECIATE is the U.S. Environmental Protection Agency’s (EPA) repository of volatile organic gas and particulate matter (PM) speciation profiles of air pollution sources. EPA released SPECIATE 4.4 in early 2014 and, in total, the SPECIATE 4.4 database includes 5,728 PM, volatile o...

EPA’s SPECIATE 4.4 Database:Development and Uses

Science.gov (United States)

SPECIATE is the U.S. Environmental Protection Agency's (EPA)repository of volatile organic gas and particulate matter (PM) speciation profiles for air pollution sources. EPA released SPECIATE 4.4 in early 2014 and, in total, the SPECIATE 4.4 database includes 5,728 PM, VOC, total...

A physiologically-inspired model of numerical classification based on graded stimulus coding

Directory of Open Access Journals (Sweden)

John Pearson

2010-01-01

Full Text Available In most natural decision contexts, the process of selecting among competing actions takes place in the presence of informative, but potentially ambiguous, stimuli. Decisions about magnitudes—quantities like time, length, and brightness that are linearly ordered—constitute an important subclass of such decisions. It has long been known that perceptual judgments about such quantities obey Weber’s Law, wherein the just-noticeable difference in a magnitude is proportional to the magnitude itself. Current physiologically inspired models of numerical classification assume discriminations are made via a labeled line code of neurons selectively tuned for numerosity, a pattern observed in the firing rates of neurons in the ventral intraparietal area (VIP of the macaque. By contrast, neurons in the contiguous lateral intraparietal area (LIP signal numerosity in a graded fashion, suggesting the possibility that numerical classification could be achieved in the absence of neurons tuned for number. Here, we consider the performance of a decision model based on this analog coding scheme in a paradigmatic discrimination task—numerosity bisection. We demonstrate that a basic two-neuron classifier model, derived from experimentally measured monotonic responses of LIP neurons, is sufficient to reproduce the numerosity bisection behavior of monkeys, and that the threshold of the classifier can be set by reward maximization via a simple learning rule. In addition, our model predicts deviations from Weber Law scaling of choice behavior at high numerosity. Together, these results suggest both a generic neuronal framework for magnitude-based decisions and a role for reward contingency in the classification of such stimuli.

Numerical optimization of the ramp-down phase with the RAPTOR code

Science.gov (United States)

Teplukhina, Anna; Sauter, Olivier; Felici, Federico; The Tcv Team; The ASDEX-Upgrade Team; The Eurofusion Mst1 Team

2017-10-01

The ramp-down optimization goal in this work is defined as the fastest possible decrease of a plasma current while avoiding any disruptions caused by reaching physical or technical limits. Numerical simulations and preliminary experiments on TCV and AUG have shown that a fast decrease of plasma elongation and an adequate timing of the H-L transition during current ramp-down can help to avoid reaching high values of the plasma internal inductance. The RAPTOR code (F. Felici et al., 2012 PPCF 54; F. Felici, 2011 EPFL PhD thesis), developed for real-time plasma control, has been used for an optimization problem solving. Recently the transport model has been extended to include the ion temperature and electron density transport equations in addition to the electron temperature and current density transport equations, increasing the physical applications of the code. The gradient-based models for the transport coefficients (O. Sauter et al., 2014 PPCF 21; D. Kim et al., 2016 PPCF 58) have been implemented to RAPTOR and tested during this work. Simulations of the AUG and TCV entire plasma discharges will be presented. See the author list of S. Coda et al., Nucl. Fusion 57 2017 102011.

Loss of speciation rate will impoverish future diversity

OpenAIRE

Rosenzweig, Michael L.

2001-01-01

Human activities have greatly reduced the amount of the earth's area available to wild species. As the area they have left declines, so will their rates of speciation. This loss of speciation will occur for two reasons: species with larger geographical ranges speciate faster; and loss of area drives up extinction rates, thus reducing the number of species available for speciation. Theory predicts steady states in species diversity, and fossils suggest that these have t...

EPAs SPECIATE 4.4 Database: Development and Uses

Science.gov (United States)

SPECIATE is the U.S. Environmental Protection Agency’s (EPA) repository of source category-specific particulate matter (PM), volatile organic gas, and other gas speciation profiles of air pollutant emissions. Abt Associates, Inc. developed SPECIATE 4.4 through a collaborat...

Development and implementation of a set of numerical quadratures SQN and EQN type in the transport code AZTRAN

International Nuclear Information System (INIS)

Chepe P, M.; Xolocostli M, J. V.; Gomez T, A. M.; Del Valle G, E.

2015-09-01

The deterministic transport codes for analysis of nuclear reactors have been used for several years already, these codes have evolved in terms of the methodology used and the degree of accuracy, because at the present time has more computer power. In this paper, the transport code used considers the classical technique of multi-group for discretization energy, for space discretization uses the nodal methods, while for the angular discretization the discrete ordinates method is used; so that presents the development and implementation of a set of numerical quadratures of SQ N type symmetrical with the same weight for each angular direction and these are compared with the quadratures of EQ N type. The two sets of numerical quadratures were implemented in the program AZTRAN to a problem with isotropic medium in XYZ geometry, in steady state using the nodal method RTN-0 (Raviart-Thomas-Nedelec). The analyzed results correspond to the effective multiplication factor k eff and neutron angular flux with approximations from S 4 to S 16 . (Author)

Development of numerical solution techniques in the KIKO3D code

International Nuclear Information System (INIS)

Panka, Istvan; Kereszturi, Andras; Hegedus, Csaba

2005-01-01

The paper describes the numerical methods applied in KIKO3D three-dimensional reactor dynamics code and present a new, more effective method (Bi-CGSTAB) for accelerating the large sparse matrix equation solution. The convergence characteristics were investigated in a given macro time step of a Control Rod Ejection transient. The results obtained by the old GMRES and new Bi-CGSTAB methods are compared. It is concluded that the real relative errors of the solutions obtained by GMRES or Bi - CGSTAB algorithms are in fact closer together than the estimated relative errors. The KIKO3D-Bi-CGSTAB method converges safely and it is 7-12 % faster than the old KIKO3D-GMRES solution (Authors)

Development of a numerical code for the prediction of the long-term behavior of the underground facilities for the high-level radioactive waste disposal

International Nuclear Information System (INIS)

Sawada, Masataka; Okada, Tetsuji; Hasegawa, Takuma

2006-01-01

Complicated phenomena originated by thermo-hydro-mechanical coupling behavior will occur in the near-field of geological disposal of nuclear waste. Development of a numerical evaluation method for such phenomena is important in order to make a reasonable repository design and a safety assessment. In order to achieve the objective above, a numerical model using the equations which can evaluate the swelling characteristics of buffer materials based on the diffusive double layer theory is proposed, and a numerical scheme for the thermo-hydro-mechanical coupled analysis including the swelling model is constructed. The proposed swelling model can reproduce the behavior observed during both swelling pressure tests and swelling deformation tests. When the developed numerical code is applied to the laboratory heater test using a bentonite specimen, it can reproduce the thermal gradient, the distribution of saturation rate and the variation of porosity. The developed numerical code will be applied to well-controlled laboratory tests and full-scale in-situ tests in the future work. In order to apply to the various geochemical conditions around the engineered barrier, chemical component will be coupled to the present numerical code. (author)

Speciation of radionuclides in the environment

International Nuclear Information System (INIS)

Gunten, H.R. von; Benes, P.

1994-02-01

Methods for the determination of the speciation of radionuclides in aerosols, in aquatic solutions, in sediments, soils and rocks are reviewed. At present, most of the results about speciation are deduced from model calculations, model experiments, and separation of species (forms) of radionuclides, e.g., by sequential extraction procedures. Methods of direct determination of speciation of radionuclides (e.g. by laser induced spectroscopy) are in general not yet sensitive enough for a measurement of the very low concentrations of radionuclides in the environment. The methodological part of this paper is followed by a review of the very abundant literature about speciation of important radionuclides in the environment, i.e. in the atmosphere, hydrosphere and lithosphere. The review does not include the biosphere. Literature up to spring 1993 is included (with a few more recent additions). (author)

X exceptionalism in Caenorhabditis speciation.

Science.gov (United States)

Cutter, Asher D

2017-11-13

Speciation genetics research in diverse organisms shows the X-chromosome to be exceptional in how it contributes to "rules" of speciation. Until recently, however, the nematode phylum has been nearly silent on this issue, despite the model organism Caenorhabditis elegans having touched most other topics in biology. Studies of speciation with Caenorhabditis accelerated with the recent discovery of species pairs showing partial interfertility. The resulting genetic analyses of reproductive isolation in nematodes demonstrate key roles for the X-chromosome in hybrid male sterility and inviability, opening up new understanding of the genetic causes of Haldane's rule, Darwin's corollary to Haldane's rule, and enabling tests of the large-X effect hypothesis. Studies to date implicate improper chromatin regulation of the X-chromosome by small RNA pathways as integral to hybrid male dysfunction. Sexual transitions in reproductive mode to self-fertilizing hermaphroditism inject distinctive molecular evolutionary features into the speciation process for some species. Caenorhabditis also provides unique opportunities for analysis in a system with XO sex determination that lacks a Y-chromosome, sex chromosome-dependent sperm competition differences and mechanisms of gametic isolation, exceptional accessibility to the development process and rapid experimental evolution. As genetic analysis of reproductive isolation matures with investigation of multiple pairs of Caenorhabditis species and new species discovery, nematodes will provide a powerful complement to more established study organisms for deciphering the genetic basis of and rules to speciation. © 2017 John Wiley & Sons Ltd.

Methods tuned on the physical problem. A way to improve numerical codes

International Nuclear Information System (INIS)

Ixaru, L.Gr.

2010-01-01

We consider the problem on how the numerical methods tuned on the physical problem can contribute to the enhancement of the performance of the codes. We illustrate this on two simple cases: solution of time independent one-dimensional Schroedinger equation, and the computation of integrals with oscillatory integrands. In both cases the tuned versions bring a massive gain in accuracy at negligible extra cost. We presented two simple problems where successive levels of tuning enhance significantly the accuracy at negligible extra cost. These problems should be seen as representing only some illustrations on how the codes can be improved but we must also mention that in many cases tuned versions still have to be developed. Just for a suggestion, quadrature formulae which involve the integrand and a number of successive derivatives of this exist, but no formula is available when some of these derivatives are missing, for example when we dispose of y and y'' but not of y'. A direct application will be on the case when the integrand involves the solution of the Schrodinger equation by the method of Numerov. (author)

Advances in Ecological Speciation: an integrative approach.

Science.gov (United States)

Faria, Rui; Renaut, Sebastien; Galindo, Juan; Pinho, Catarina; Melo-Ferreira, José; Melo, Martim; Jones, Felicity; Salzburger, Walter; Schluter, Dolph; Butlin, Roger

2014-02-01

The role of natural selection in promoting reproductive isolation has received substantial renewed interest within the last two decades. As a consequence, the study of ecological speciation has become an extremely productive research area in modern evolutionary biology. Recent innovations in sequencing technologies offer an unprecedented opportunity to study the mechanisms involved in ecological speciation. Genome scans provide significant insights but have some important limitations; efforts are needed to integrate them with other approaches to make full use of the sequencing data deluge. An international conference 'Advances in Ecological Speciation' organized by the University of Porto (Portugal) aimed to review current progress in ecological speciation. Using some of the examples presented at the conference, we highlight the benefits of integrating ecological and genomic data and discuss different mechanisms of parallel evolution. Finally, future avenues of research are suggested to advance our knowledge concerning the role of natural selection in the establishment of reproductive isolation during ecological speciation. © 2013 John Wiley & Sons Ltd.

Thermodynamics proposes, kinetics decides, speciation dares: speciation of actinides in biological media

International Nuclear Information System (INIS)

Ansoborlo, E.

2005-06-01

After having recalled the content and purpose of his research thesis, the author proposes a detailed overview of the research works he performed thereafter in the field of the speciation of actinides at the level of the organism entry gates and in target tissues. These works therefore concern four important areas of research in radioprotection: bio-kinetic, toxicology, decorporation, and dosimetry studies. The author outlines how speciation studies can be useful for these different areas, and to better understand and describe, and therefore foresee, the biokinetics and toxicity of radionuclides

Speciation imperatives for waste management and environmental pollution

International Nuclear Information System (INIS)

Wymer, R.G.

2001-01-01

This paper addresses speciation requirements in the context of problems produced by nuclear energy and nuclear weapons production. These problems are primarily in the areas of waste management, material contamination, and environmental pollution. They pose difficult and important measurement and speciation challenges. Examples of speciation requirements in the context of national and international regulations are presented to exemplify and make quantitative the types of problems posed by waste management, material contamination, and environmental pollution. The importance of identifying species present in the natural environment as well as in wastes from chemical and physical processing and from waste management activities and accidental releases is addressed. Differing speciation requirements for macro and micro concentrations of species are discussed. The role of speciation in modelling studies is discussed. (author)

Numerical Analysis of Diaphragm Wall Model Executed in Poznań Clay Formation Applying Selected Fem Codes

Directory of Open Access Journals (Sweden)

Superczyńska M.

2016-09-01

Full Text Available The paper presents results of numerical calculations of a diaphragm wall model executed in Poznań clay formation. Two selected FEM codes were applied, Plaxis and Abaqus. Geological description of Poznań clay formation in Poland as well as geotechnical conditions on construction site in Warsaw city area were presented. The constitutive models of clay implemented both in Plaxis and Abaqus were discussed. The parameters of the Poznań clay constitutive models were assumed based on authors’ experimental tests. The results of numerical analysis were compared taking into account the measured values of horizontal displacements.

OCENER, a one-dimensional computer code for the numerical simulation of the mechanical effects of peaceful underground nuclear explosions in rocks

International Nuclear Information System (INIS)

Gupta, S.C.; Sikka, S.K.; Chidambaram, R.

1979-01-01

An account is given of a one-dimensional spherical symmetric computer code for the numerical simulation of the effects of peaceful underground nuclear explosions in rocks (OCENER). In the code, the nature of the stress field and response of the medium to this field are modelled numerically by finite difference form of the laws of continuum mechanics and the constitutive relations of the rock medium in which the detonation occurs. It enables to approximate well the cavity growth and fracturing of the surrounding rock for contained explosions and the events upto the time the spherical symmetry is valid for cratering-type explosions. (auth.)

Electrospray mass spectrometry for actinides and lanthanide speciation

International Nuclear Information System (INIS)

Moulin, C.; Amekraz, B.; Colette, S.; Doizi, D.; Jacopin, C.; Lamouroux, C.; Plancque, G.

2006-01-01

Electrospray mass spectrometry (ES-MS) is a new speciation technique that has the great interest to be able to probe the element, the ligand and the complex in order to reach the speciation. This paper will focus on the use of ES-MS for the speciation of actinides/lanthanides on several systems of interest in various fields such as the interaction between DTPA (decorporant) and europium, HEBP and uranium, BTP (new extracting agent) and lanthanides with comparison with known chemistry as well as whenever possible with other speciation techniques

Speciation of zinc in contaminated soils

International Nuclear Information System (INIS)

Stephan, Chadi H.; Courchesne, Francois; Hendershot, William H.; McGrath, Steve P.; Chaudri, Amar M.; Sappin-Didier, Valerie; Sauve, Sebastien

2008-01-01

The chemical speciation of zinc in soil solutions is critical to the understanding of its bioavailability and potential toxic effects. We studied the speciation of Zn in soil solution extracts from 66 contaminated soils representative of a wide range of field conditions in both North America and Europe. Within this dataset, we evaluated the links among the dissolved concentrations of zinc and the speciation of Zn 2+ , soil solution pH, total soil Zn, dissolved organic matter (DOM), soil organic matter (SOM) and the concentrations of different inorganic anions. The solid-liquid partitioning coefficient (K d ) for Zn ranged from 17 to 13,100 L kg -1 soil. The fraction of dissolved Zn bound to DOM varied from 60% to 98% and the soil solution free Zn 2+ varied from 40% to 60% of the labile Zn. Multiple regression equations to predict free Zn 2+ , dissolved Zn and the solid-liquid partitioning of Zn are given for potential use in environmental fate modeling and risk assessment. The multiple regressions also highlight some of the most important soil properties controlling the solubility and chemical speciation of zinc in contaminated soils. - We studied the relationships among the chemical speciation of Zn in soil solution extracts from 66 contaminated soils and various physicochemical properties of the soils

Numerical spin tracking in a synchrotron computer code Spink: Examples (RHIC)

International Nuclear Information System (INIS)

Luccio, A.

1995-01-01

In the course of acceleration of polarized protons in a synchrotron, many depolarizing resonances are encountered. They are classified in two categories: Intrinsic resonances that depend on the lattice structure of the ring and arise from the coupling of betatron oscillations with horizontal magnetic fields, and imperfection resonances caused by orbit distortions due to field errors. In general, the spectrum of resonances vs spin tune Gγ(G = 1.7928, the proton gyromagnetic anomaly, and y the proton relativistic energy ratio) for a given lattice tune ν, or vs ν for a given Gγ, contains a multitude of lines with various amplitudes or resonance strengths. The depolarization due to the resonance lines can be studied by numerically tracking protons with spin in a model accelerator. Tracking will allow one to check the strength of resonances, to study the effects of devices like Siberian Snakes, to find safe lattice tune regions where to operate, and finally to study in detail the operation of special devices such as Spin Flippers. A few computer codes exist that calculate resonance strengths E k and perform tracking, for proton and electron machines. Most relevant to our work for the AGS and RHIC machines are the programs Depol and Snake. Depol, calculates the E k 's by Fourier analysis. The input to Depol is the output of a machine model code, such as Synch or Mad, containing all details of the lattice. Snake, does the tracking, starting from a synthetic machine, that contains a certain number of periods, of FODO cells, of Siberian snakes, etc. We believed the complexities of machines like the AGS or RHIC could not be adequately represented by Snake. Then, we decided to write a new code, Spink, that combines some of the features of Depol and Snake. I.E., Spink reads a Mad output like Depol and tracks as Snake does. The structure of the code and examples for RHIC are described in the following

Radionuclide speciation in the environment: a review

International Nuclear Information System (INIS)

Moulin, V.; Moulin, C.

2001-01-01

Speciation determination is of prime importance to explain and evaluate the mobility, the toxicity and the risk resulting from the presence of trace elements in natural systems, in particular in the case of radionuclides, in the framework of environment and waste management purposes. The present paper will then focus more specifically on the physico-chemical speciation of radionuclides, and more particularly of actinides, in the environment, with emphasis on the behavior in solution: from a chemical point of view (with important ligands including colloidal phases) using experimental data and speciation calculations, as well as from a more technical point of view (with analytical methods for in situ speciation determination and thermodynamic data determination). A review of recent papers (mainly from CEA) is presented. (orig.)

Dosimetric reconstruction of radiological accident by numerical simulations by means associating an anthropomorphic model and a Monte Carlo computation code

International Nuclear Information System (INIS)

Courageot, Estelle

2010-01-01

After a description of the context of radiological accidents (definition, history, context, exposure types, associated clinic symptoms of irradiation and contamination, medical treatment, return on experience) and a presentation of dose assessment in the case of external exposure (clinic, biological and physical dosimetry), this research thesis describes the principles of numerical reconstruction of a radiological accident, presents some computation codes (Monte Carlo code, MCNPX code) and the SESAME tool, and reports an application to an actual case (an accident which occurred in Equator in April 2009). The next part reports the developments performed to modify the posture of voxelized phantoms and the experimental and numerical validations. The last part reports a feasibility study for the reconstruction of radiological accidents occurring in external radiotherapy. This work is based on a Monte Carlo simulation of a linear accelerator, with the aim of identifying the most relevant parameters to be implemented in SESAME in the case of external radiotherapy

Parasites Promote and When Might They Constrain Ecological Speciation?

Directory of Open Access Journals (Sweden)

Anssi Karvonen

2012-01-01

Full Text Available Research on speciation and adaptive radiation has flourished during the past decades, yet factors underlying initiation of reproductive isolation often remain unknown. Parasites represent important selective agents and have received renewed attention in speciation research. We review the literature on parasite-mediated divergent selection in context of ecological speciation and present empirical evidence for three nonexclusive mechanisms by which parasites might facilitate speciation: reduced viability or fecundity of immigrants and hybrids, assortative mating as a pleiotropic by-product of host adaptation, and ecologically-based sexual selection. We emphasise the lack of research on speciation continuums, which is why no study has yet made a convincing case for parasite driven divergent evolution to initiate the emergence of reproductive isolation. We also point interest towards selection imposed by single versus multiple parasite species, conceptually linking this to strength and multifariousness of selection. Moreover, we discuss how parasites, by manipulating behaviour or impairing sensory abilities of hosts, may change the form of selection that underlies speciation. We conclude that future studies should consider host populations at variable stages of the speciation process, and explore recurrent patterns of parasitism and resistance that could pinpoint the role of parasites in imposing the divergent selection that initiates ecological speciation.

How Facilitation May Interfere with Ecological Speciation

Directory of Open Access Journals (Sweden)

P. Liancourt

2012-01-01

Full Text Available Compared to the vast literature linking competitive interactions and speciation, attempts to understand the role of facilitation for evolutionary diversification remain scarce. Yet, community ecologists now recognize the importance of positive interactions within plant communities. Here, we examine how facilitation may interfere with the mechanisms of ecological speciation. We argue that facilitation is likely to (1 maintain gene flow among incipient species by enabling cooccurrence of adapted and maladapted forms in marginal habitats and (2 increase fitness of introgressed forms and limit reinforcement in secondary contact zones. Alternatively, we present how facilitation may favour colonization of marginal habitats and thus enhance local adaptation and ecological speciation. Therefore, facilitation may impede or pave the way for ecological speciation. Using a simple spatially and genetically explicit modelling framework, we illustrate and propose some first testable ideas about how, when, and where facilitation may act as a cohesive force for ecological speciation. These hypotheses and the modelling framework proposed should stimulate further empirical and theoretical research examining the role of both competitive and positive interactions in the formation of incipient species.

Speciation by Symbiosis: the Microbiome and Behavior.

Science.gov (United States)

Shropshire, J Dylan; Bordenstein, Seth R

2016-03-31

Species are fundamental units of comparison in biology. The newly discovered importance and ubiquity of host-associated microorganisms are now stimulating work on the roles that microbes can play in animal speciation. We previously synthesized the literature and advanced concepts of speciation by symbiosis with notable attention to hybrid sterility and lethality. Here, we review recent studies and relevant data on microbes as players in host behavior and behavioral isolation, emphasizing the patterns seen in these analyses and highlighting areas worthy of additional exploration. We conclude that the role of microbial symbionts in behavior and speciation is gaining exciting traction and that the holobiont and hologenome concepts afford an evolving intellectual framework to promote research and intellectual exchange between disciplines such as behavior, microbiology, genetics, symbiosis, and speciation. Given the increasing centrality of microbiology in macroscopic life, microbial symbiosis is arguably the most neglected aspect of animal and plant speciation, and studying it should yield a better understanding of the origin of species. Copyright © 2016 Shropshire and Bordenstein.

Research on the chemical speciation of actinides

International Nuclear Information System (INIS)

Jung, Euo Chang; Park, K. K.; Cho, H. R.

2012-04-01

A demand for the safe and effective management of spent nuclear fuel and radioactive waste generated from nuclear power plant draws increasing attention with the growth of nuclear power industry. The objective of this project is to establish the basis of research on the actinide chemistry by using highly sensitive and advanced laser-based spectroscopic systems. Researches on the chemical speciation of actinides are prerequisite for the development of technologies related to nuclear fuel cycles, especially, such as the safe management of high level radioactive wastes and the chemical examination of irradiated nuclear fuels. For supporting these technologies, laser-based spectroscopies have been applied for the chemical speciation of actinide in aqueous solutions and the quantitative analysis of actinide isotopes in spent nuclear fuels. In this report, results on the following subjects have been summarized. Development of TRLFS technology for the chemical speciation of actinides, Development of laser-induced photo-acoustic spectroscopy (LPAS) system, Application of LIBD technology to investigate dynamic behaviors of actinides dissolution reactions, Development of nanoparticle analysis technology in groundwater using LIBD, Chemical speciation of plutonium complexes by using a LWCC system, Development of LIBS technology for the quantitative analysis of actinides, Evaluation on the chemical reactions between actinides and humic substances, Spectroscopic speciation of uranium-ligand complexes in aqueous solution, Chemical speciation of actinides adsorbed on metal oxides surfaces

Research on the chemical speciation of actinides

International Nuclear Information System (INIS)

Jung, Euo Chang; Park, K. K.; Cho, H. R.

2010-04-01

A demand for the safe and effective management of spent nuclear fuel and radioactive waste generated from nuclear power plant draws increasing attention with the growth of nuclear power industry. The objective of this project is to establish the basis of research on the actinide chemistry by using advanced laser-based highly sensitive spectroscopic systems. Researches on the chemical speciation of actinides are prerequisite for the development of technologies related to nuclear fuel cycles, especially, such as the safe management of high level radioactive wastes and the chemical examination of irradiated nuclear fuels. For supporting these technologies, laser-based spectroscopies have been performed for the chemical speciation of actinide in an aqueous solutions and the quantitative analysis of actinide isotopes in spent nuclear fuels. In this report, results on the following subjects have been summarized. (1) Development of TRLFS technology for chemical speciation of actinides, (2) Development of LIBD technology for measuring solubility of actinides, (3) Chemical speciation of plutonium complexes by using a LWCC system, (4) Development of LIBS technology for the quantitative analysis of actinides, (5) Development of technology for the chemical speciation of actinides by CE, (6) Evaluation on the chemical reactions between actinides and humic substances, (7) Chemical speciation of actinides adsorbed on metal oxides surfaces, (8) Determination of actinide source terms of spent nuclear fuel

Incidence and Speciation of Candida Species among Non-gravid ...

African Journals Online (AJOL)

This study investigated the incidence and speciation of Candida species among non-gravid young females, using commercially available chromogenic Candida speciation media (CHROM agar) for the identification/speciation of medically important yeast and yeastlike organisms in a routine clinical mycology laboratory.

MicroHH 1.0: a computational fluid dynamics code for direct numerical simulation and large-eddy simulation of atmospheric boundary layer flows

Science.gov (United States)

van Heerwaarden, Chiel C.; van Stratum, Bart J. H.; Heus, Thijs; Gibbs, Jeremy A.; Fedorovich, Evgeni; Mellado, Juan Pedro

2017-08-01

This paper describes MicroHH 1.0, a new and open-source (www.microhh.org) computational fluid dynamics code for the simulation of turbulent flows in the atmosphere. It is primarily made for direct numerical simulation but also supports large-eddy simulation (LES). The paper covers the description of the governing equations, their numerical implementation, and the parameterizations included in the code. Furthermore, the paper presents the validation of the dynamical core in the form of convergence and conservation tests, and comparison of simulations of channel flows and slope flows against well-established test cases. The full numerical model, including the associated parameterizations for LES, has been tested for a set of cases under stable and unstable conditions, under the Boussinesq and anelastic approximations, and with dry and moist convection under stationary and time-varying boundary conditions. The paper presents performance tests showing good scaling from 256 to 32 768 processes. The graphical processing unit (GPU)-enabled version of the code can reach a speedup of more than an order of magnitude for simulations that fit in the memory of a single GPU.

Arsenic speciation results

Data.gov (United States)

U.S. Environmental Protection Agency — Linear combination fitting results of synchrotron data to determine arsenic speciation in soil samples. This dataset is associated with the following publication:...

The use of CFD code for numerical simulation study on the air/water countercurrent flow limitation in nuclear reactors

International Nuclear Information System (INIS)

Morghi, Youssef; Mesquita, Amir Zacarias; Santos, Andre Augusto Campagnole dos; Vasconcelos, Victor

2015-01-01

For the experimental study on the air/water countercurrent flow limitation in Nuclear Reactors, were built at CDTN an acrylic test sections with the same geometric shape of 'hot leg' of a Pressurized Water Reactor (PWR). The hydraulic circuit is designed to be used with air and water at pressures near to atmospheric and ambient temperature. Due to the complexity of the CCFL experimental, the numerical simulation has been used. The aim of the numerical simulations is the validation of experimental data. It is a global trend, the use of computational fluid dynamics (CFD) modeling and prediction of physical phenomena related to heat transfer in nuclear reactors. The most used CFD codes are: FLUENT®, STAR- CD®, Open Foam® and CFX®. In CFD, closure models are required that must be validated, especially if they are to be applied to nuclear reactor safety. The Thermal- Hydraulics Laboratory of CDTN offers computing infrastructure and license to use commercial code CFX®. This article describes a review about CCFL and the use of CFD for numerical simulation of this phenomenal for Nuclear Rector. (author)

The use of CFD code for numerical simulation study on the air/water countercurrent flow limitation in nuclear reactors

Energy Technology Data Exchange (ETDEWEB)

Morghi, Youssef; Mesquita, Amir Zacarias; Santos, Andre Augusto Campagnole dos; Vasconcelos, Victor, E-mail: ymo@cdtn.br, E-mail: amir@cdtn.br, E-mail: aacs@cdtn.br, E-mail: vitors@cdtn.br [Centro de Desenvolvimento da Tecnologia Nuclear (CDTN/CNEN-MG), Belo Horizonte, MG (Brazil)

2015-07-01

For the experimental study on the air/water countercurrent flow limitation in Nuclear Reactors, were built at CDTN an acrylic test sections with the same geometric shape of 'hot leg' of a Pressurized Water Reactor (PWR). The hydraulic circuit is designed to be used with air and water at pressures near to atmospheric and ambient temperature. Due to the complexity of the CCFL experimental, the numerical simulation has been used. The aim of the numerical simulations is the validation of experimental data. It is a global trend, the use of computational fluid dynamics (CFD) modeling and prediction of physical phenomena related to heat transfer in nuclear reactors. The most used CFD codes are: FLUENT®, STAR- CD®, Open Foam® and CFX®. In CFD, closure models are required that must be validated, especially if they are to be applied to nuclear reactor safety. The Thermal- Hydraulics Laboratory of CDTN offers computing infrastructure and license to use commercial code CFX®. This article describes a review about CCFL and the use of CFD for numerical simulation of this phenomenal for Nuclear Rector. (author)

Numerical verification/validation of the theory of coupled reactors for deuterium critical assembly, using MCNP5 and Serpent codes

International Nuclear Information System (INIS)

Hussein, M.S; Lewis, B.J.; Bonin, H.W.

2013-01-01

The theory of multipoint coupled reactors developed by multi-group transport is verified by using the probabilistic transport code MCNP5 and the continuous-energy Monte Carlo reactor physics burnup calculation Serpent code. The verification was performed by calculating the multiplication factors (or criticality factors) and coupling coefficients for a two-region test reactor known as the Deuterium Critical Assembly, DCA. The multiplication factors k eff calculated numerically and independently from simulations of the DCA by MCNP5 and Serpent codes are compared with the multiplication factors k eff calculated based on the coupled reactor theory. Excellent agreement was obtained between the multiplication factors k eff calculated with the Serpent code, with MCNP5, and from the coupled reactor theory. This analysis demonstrates that the Serpent code is valid for the multipoint coupled reactor calculations. (author)

Numerical verification/validation of the theory of coupled reactors for deuterium critical assembly, using MCNP5 and Serpent codes

Energy Technology Data Exchange (ETDEWEB)

Hussein, M.S, E-mail: mohamed.hussein@rmc.ca [Royal Military College of Canada, Dept. of Chemistry and Chemical Engineering, Kingston, Ontario (Canada); Lewis, B.J., E-mail: Brent.Lewis@uoit.ca [Univ. of Ontario Inst. of Technology, Faculty of Energy Systems and Nuclear Science, Oshawa, Ontario (Canada); Bonin, H.W., E-mail: bonin-h@rmc.ca [Royal Military College of Canada, Dept. of Chemistry and Chemical Engineering, Kingston, Ontario (Canada)

2013-07-01

The theory of multipoint coupled reactors developed by multi-group transport is verified by using the probabilistic transport code MCNP5 and the continuous-energy Monte Carlo reactor physics burnup calculation Serpent code. The verification was performed by calculating the multiplication factors (or criticality factors) and coupling coefficients for a two-region test reactor known as the Deuterium Critical Assembly, DCA. The multiplication factors k{sub eff} calculated numerically and independently from simulations of the DCA by MCNP5 and Serpent codes are compared with the multiplication factors k{sub eff} calculated based on the coupled reactor theory. Excellent agreement was obtained between the multiplication factors k{sub eff} calculated with the Serpent code, with MCNP5, and from the coupled reactor theory. This analysis demonstrates that the Serpent code is valid for the multipoint coupled reactor calculations. (author)

Numerical experiments in finite element analysis of thermoelastoplastic behaviour of materials. Further developments of the PLASTEF code

International Nuclear Information System (INIS)

Basombrio, F.G.; Sarmiento, G.S.

1980-01-01

In a previous paper the finite element code PLASTEF for the numerical simulation of thermoelastoplastic behaviour of materials was presented in its general outline. This code employs an initial stress incremental procedure for given histories of loads and temperature. It has been formulated for medium sized computers. The present work is an extension of the previous paper to consider additional aspects of the variable temperature case. Non-trivial tests of this type of situation are described. Finally, details are given of some concrete applications to the prediction of thermoelastoplastic collapse of nuclear fuel element cladding. (author)

Genetic evidence for hybrid trait speciation in heliconius butterflies.

Directory of Open Access Journals (Sweden)

Camilo Salazar

2010-04-01

Full Text Available Homoploid hybrid speciation is the formation of a new hybrid species without change in chromosome number. So far, there has been a lack of direct molecular evidence for hybridization generating novel traits directly involved in animal speciation. Heliconius butterflies exhibit bright aposematic color patterns that also act as cues in assortative mating. Heliconius heurippa has been proposed as a hybrid species, and its color pattern can be recreated by introgression of the H. m. melpomene red band into the genetic background of the yellow banded H. cydno cordula. This hybrid color pattern is also involved in mate choice and leads to reproductive isolation between H. heurippa and its close relatives. Here, we provide molecular evidence for adaptive introgression by sequencing genes across the Heliconius red band locus and comparing them to unlinked wing patterning genes in H. melpomene, H. cydno, and H. heurippa. 670 SNPs distributed among 29 unlinked coding genes (25,847bp showed H. heurippa was related to H. c. cordula or the three species were intermixed. In contrast, among 344 SNPs distributed among 13 genes in the red band region (18,629bp, most showed H. heurippa related with H. c. cordula, but a block of around 6,5kb located in the 3' of a putative kinesin gene grouped H. heurippa with H. m. melpomene, supporting the hybrid introgression hypothesis. Genealogical reconstruction showed that this introgression occurred after divergence of the parental species, perhaps around 0.43Mya. Expression of the kinesin gene is spatially restricted to the distal region of the forewing, suggesting a mechanism for pattern regulation. This gene therefore constitutes the first molecular evidence for adaptive introgression during hybrid speciation and is the first clear candidate for a Heliconius wing patterning locus.

Modeling an HF NVIS Towel-Bar Antenna on a Coast Guard Patrol Boat. A Comparison of WIPL-D and the Numerical Electromagnetics Code (NEC)

National Research Council Canada - National Science Library

Mora, Darla; Weiser, Christopher; McKaughan, Michael

2005-01-01

A Coast Guard patrol boat high-frequency (HF) near-vertical incident skywave (NVIS) antenna is selected as a test case to compare the electromagnetic modeling programs Numerical Electromagnetics Code, NEC and WIPL-D code...

Arsenic speciation in solids using X-ray absorption spectroscopy

Science.gov (United States)

Foster, Andrea L.; Kim, Chris S.

2014-01-01

Synchrotron-based X-ray absorption spectroscopy (XAS) is an in situ, minimally-destructive, element-specific, molecular-scale structural probe that has been employed to study the chemical forms (species) of arsenic (As) in solid and aqueous phases (including rocks, soils, sediment, synthetic compounds, and numerous types of biota including humans) for more than 20 years. Although several excellent reviews of As geochemistry and As speciation in the environment have been published previously (including recent contributions in this volume), the explosion of As-XAS studies over the past decade (especially studies employing microfocused X-ray beams) warrants this new review of the literature and of data analysis methods.

Numerical analysis on the calandria tubes in the moderator of a heavy water reactor using OpenFOAM and other codes

International Nuclear Information System (INIS)

Chang, S.M.; Kim, H.T.

2013-01-01

CANDU, a prototype of heavy water reactor is modeled for the moderator system with porous media buoyancy-effect heat-transfer turbulence model. OpenFOAM, a set of C++ classes and libraries developed under the object-oriented concept, is selected as the tool of numerical analysis. The result from this computational code is compared with experiments and other commercial code data through ANSYS-CFX and COMSOL Multi-physics. The three-dimensional code concerning buoyancy force, turbulence, and heat transfer is tested and shown to be successful for the analysis of thermo-hydraulic system of heavy water reactors. (authors)

Speciation of Pb in industrially polluted soils

DEFF Research Database (Denmark)

Jensen, Pernille Erland; Ottosen, Lisbeth M.; Pedersen, Anne Juul

2006-01-01

This study was aimed at elucidating the importance of original Pb-speciation versus soil-characteristics to mobility and distribution of Pb in industrially polluted soils. Ten industrially polluted Danish surface soils were characterized and Pb speciation was evaluated through SEM-EDX studies...

Near-fault earthquake ground motion prediction by a high-performance spectral element numerical code

International Nuclear Information System (INIS)

Paolucci, Roberto; Stupazzini, Marco

2008-01-01

Near-fault effects have been widely recognised to produce specific features of earthquake ground motion, that cannot be reliably predicted by 1D seismic wave propagation modelling, used as a standard in engineering applications. These features may have a relevant impact on the structural response, especially in the nonlinear range, that is hard to predict and to be put in a design format, due to the scarcity of significant earthquake records and of reliable numerical simulations. In this contribution a pilot study is presented for the evaluation of seismic ground-motions in the near-fault region, based on a high-performance numerical code for 3D seismic wave propagation analyses, including the seismic fault, the wave propagation path and the near-surface geological or topographical irregularity. For this purpose, the software package GeoELSE is adopted, based on the spectral element method. The set-up of the numerical benchmark of 3D ground motion simulation in the valley of Grenoble (French Alps) is chosen to study the effect of the complex interaction between basin geometry and radiation mechanism on the variability of earthquake ground motion

Blahut-Arimoto algorithm and code design for action-dependent source coding problems

DEFF Research Database (Denmark)

Trillingsgaard, Kasper Fløe; Simeone, Osvaldo; Popovski, Petar

2013-01-01

The source coding problem with action-dependent side information at the decoder has recently been introduced to model data acquisition in resource-constrained systems. In this paper, an efficient Blahut-Arimoto-type algorithm for the numerical computation of the rate-distortion-cost function...... for this problem is proposed. Moreover, a simplified two-stage code structure based on multiplexing is put forth, whereby the first stage encodes the actions and the second stage is composed of an array of classical Wyner-Ziv codes, one for each action. Leveraging this structure, specific coding/decoding...... strategies are designed based on LDGM codes and message passing. Through numerical examples, the proposed code design is shown to achieve performance close to the rate-distortion-cost function....

Numerical relativity

International Nuclear Information System (INIS)

Piran, T.

1982-01-01

There are many recent developments in numerical relativity, but there remain important unsolved theoretical and practical problems. The author reviews existing numerical approaches to solution of the exact Einstein equations. A framework for classification and comparison of different numerical schemes is presented. Recent numerical codes are compared using this framework. The discussion focuses on new developments and on currently open questions, excluding a review of numerical techniques. (Auth.)

Numerical method improvement for a subchannel code

Energy Technology Data Exchange (ETDEWEB)

Ding, W.J.; Gou, J.L.; Shan, J.Q. [Xi' an Jiaotong Univ., Shaanxi (China). School of Nuclear Science and Technology

2016-07-15

Previous studies showed that the subchannel codes need most CPU time to solve the matrix formed by the conservation equations. Traditional matrix solving method such as Gaussian elimination method and Gaussian-Seidel iteration method cannot meet the requirement of the computational efficiency. Therefore, a new algorithm for solving the block penta-diagonal matrix is designed based on Stone's incomplete LU (ILU) decomposition method. In the new algorithm, the original block penta-diagonal matrix will be decomposed into a block upper triangular matrix and a lower block triangular matrix as well as a nonzero small matrix. After that, the LU algorithm is applied to solve the matrix until the convergence. In order to compare the computational efficiency, the new designed algorithm is applied to the ATHAS code in this paper. The calculation results show that more than 80 % of the total CPU time can be saved with the new designed ILU algorithm for a 324-channel PWR assembly problem, compared with the original ATHAS code.

Self-consistent approach for neutral community models with speciation

Science.gov (United States)

Haegeman, Bart; Etienne, Rampal S.

2010-03-01

Hubbell’s neutral model provides a rich theoretical framework to study ecological communities. By incorporating both ecological and evolutionary time scales, it allows us to investigate how communities are shaped by speciation processes. The speciation model in the basic neutral model is particularly simple, describing speciation as a point-mutation event in a birth of a single individual. The stationary species abundance distribution of the basic model, which can be solved exactly, fits empirical data of distributions of species’ abundances surprisingly well. More realistic speciation models have been proposed such as the random-fission model in which new species appear by splitting up existing species. However, no analytical solution is available for these models, impeding quantitative comparison with data. Here, we present a self-consistent approximation method for neutral community models with various speciation modes, including random fission. We derive explicit formulas for the stationary species abundance distribution, which agree very well with simulations. We expect that our approximation method will be useful to study other speciation processes in neutral community models as well.

Pollinator-Driven Speciation in Sexually Deceptive Orchids

Directory of Open Access Journals (Sweden)

Shuqing Xu

2012-01-01

Full Text Available Pollinator-mediated selection has been suggested to play a major role for the origin and maintenance of the species diversity in orchids. Sexually deceptive orchids are one of the prime examples for rapid, pollinator-mediated plant radiations, with many species showing little genetic differentiation, lack of postzygotic barriers, but strong prezygotic reproductive isolation. These orchids mimic mating signals of female insects and employ male insects as pollinators. This kind of sexual mimicry leads to highly specialised pollination and provides a good system for investigating the process of pollinator-driven speciation. Here, we summarise the knowledge of key processes of speciation in this group of orchids and conduct a meta-analysis on traits that contribute to species differentiation, and thus potentially to speciation. Our study suggests that pollinator shift through changes in floral scent is predominant among closely related species in sexually deceptive orchids. Such shifts can provide a mechanism for pollinator-driven speciation in plants, if the resulting floral isolation is strong. Furthermore, changes in floral scent in these orchids are likely controlled by few genes. Together these factors suggest speciation in sexually deceptive orchids may happen rapidly and even in sympatry, which may explain the remarkable species diversity observed in this plant group.

The reality and importance of founder speciation in evolution.

Science.gov (United States)

Templeton, Alan R

2008-05-01

A founder event occurs when a new population is established from a small number of individuals drawn from a large ancestral population. Mayr proposed that genetic drift in an isolated founder population could alter the selective forces in an epistatic system, an observation supported by recent studies. Carson argued that a period of relaxed selection could occur when a founder population is in an open ecological niche, allowing rapid population growth after the founder event. Selectable genetic variation can actually increase during this founder-flush phase due to recombination, enhanced survival of advantageous mutations, and the conversion of non-additive genetic variance into additive variance in an epistatic system, another empirically confirmed prediction. Templeton combined the theories of Mayr and Carson with population genetic models to predict the conditions under which founder events can contribute to speciation, and these predictions are strongly confirmed by the empirical literature. Much of the criticism of founder speciation is based upon equating founder speciation to an adaptive peak shift opposed by selection. However, Mayr, Carson and Templeton all modeled a positive interaction of selection and drift, and Templeton showed that founder speciation is incompatible with peak-shift conditions. Although rare, founder speciation can have a disproportionate importance in adaptive innovation and radiation, and examples are given to show that "rare" does not mean "unimportant" in evolution. Founder speciation also interacts with other speciation mechanisms such that a speciation event is not a one-dimensional process due to either selection alone or drift alone. (c) 2008 Wiley Periodicals, Inc.

LJUNGSKILE 1.0 A Computer Program for Investigation of Uncertainties in Chemical Speciation

International Nuclear Information System (INIS)

Ekberg, Christian; Oedegaard-Jensen, Arvid

2002-11-01

In analysing the long-term safety of nuclear waste disposal, there is a need to investigate uncertainties in chemical speciation calculations. Chemical speciation is of importance in evaluating the solubility of radionuclides, the chemical degradation of engineering materials, and chemical processes controlling groundwater composition. The uncertainties in chemical speciation may for instance be related to uncertainties in thermodynamic data, the groundwater composition, or the extrapolation to the actual temperature and ionic strength. The magnitude of such uncertainties and its implications are seldom explicitly evaluated in any detail. Commonly available chemical speciation programmes normally do not have a build-in option to include uncertainty ranges. The program developed within this project has the capability of incorporating uncertainty ranges in speciation calculations and can be used for graphical presentation of uncertainty ranges for dominant species. The program should be regarded as a starting point for assessing uncertainties in chemical speciation, since it is not yet comprehensive in its capabilities. There may be limitations in its usefulness to address various geochemical problems. The LJUNGSKILE code allows the user to select two approaches: the Monte Carlo (MC) approach and the Latin Hypercube Sampling (LHS). LHS allows to produce a satisfactory statistics with a minimum of CPU time. It is, in general, possible to do a simple theoretical speciation calculation within seconds. There are, admittedly, alternatives to LHS and there is criticism towards the uncritical use of LHS output because commonly correlation between some of the input variables exists. LHS, like MC, is not capable to take these correlations into account. Such a correlation can, i.e. exist between the pH of a solution and the partial pressure of CO 2 : higher pH solutions may absorb larger amounts of CO 2 and can reduce the CO 2 partial pressure. It is therefore of advantage to

Speciation from photon to ion detection

International Nuclear Information System (INIS)

Moulin, C.

2001-01-01

New analytical techniques allowing to perform speciation in the framework of the nuclear fuel cycle are more and more needed. Among them, several laser-based analytical techniques present several advantages (non intrusive). Hence, Thermal Lensing (TL)/Photoacoustic (LIPAS), Time Resolved selective, sensitive Laser-Induced Fluorescence (TRLIF) have been used for actinides/lanthanides interaction and speciation studies in inorganic and organic matrices, Laser Ablation-Optical Emission Spectroscopy (LA-OES or LIBS) for direct studies on solids, liquids,... where in situ measurements (elemental or isotopic) are mandatory. In complementary to these photon-based methods, new ion detection methods such as ElectroSpray-Mass Spectrometry (ES-MS) seems promising for speciation studies. Principle, advantages and limitations as well as results obtained and trends for these different methods will be presented. (author)

The numerical comparison of fire combustion model and water-mist suppression with experiments by FDS code

International Nuclear Information System (INIS)

Li Hsuennien; Ferng Yuhming; Shih Chunkuan; Hsu Wensheng

2007-01-01

FDS [1] code numerically solves a form of the Navier-Stokes equations appropriate for low-speed, thermally driven flow with an emphasis on smoke and heat transport from fires. FDS uses a mixture fraction combustion model. The mixture fraction is a conserved scalar quantity that is defined as the fraction of fuel gas at a given point in the flow field. The model assumes that combustion is mixing-controlled, and that the reaction of fuel and oxygen is infinitely fast. In FDS, Lagrangian particles are used to simulate smoke movement and sprinkling water-mist discharge. In order to evaluate the combustion model and water-mist suppression function of the code, FDS analyses are conducted to simulate two enclosure fire cases available in the literature. Comparisons with other combustion models are also made. For fires suppression by water-mist in FDS, parametric studies are performed to compare various water-mist injection characteristics for maximum suppression. Numerical results indicate that the flame suppression is closely related to characteristics of the water mist, such as droplet diameter, mist injection velocity, injection density. Our present investigations show that the combustion model and water-mist suppression in FDS can provide simulation results that are comparable with the experiments. (author)

Development of the Monju core safety analysis numerical models by super-COPD code

International Nuclear Information System (INIS)

Yamada, Fumiaki; Minami, Masaki

2010-12-01

Japan Atomic Energy Agency constructed a computational model for safety analysis of Monju reactor core to be built into a modularized plant dynamics analysis code Super-COPD code, for the purpose of heat removal capability evaluation at the in total 21 defined transients in the annex to the construction permit application. The applicability of this model to core heat removal capability evaluation has been estimated by back to back result comparisons of the constituent models with conventionally applied codes and by application of the unified model. The numerical model for core safety analysis has been built based on the best estimate model validated by the actually measured plant behavior up to 40% rated power conditions, taking over safety analysis models of conventionally applied COPD and HARHO-IN codes, to be capable of overall calculations of the entire plant with the safety protection and control systems. Among the constituents of the analytical model, neutronic-thermal model, heat transfer and hydraulic models of PHTS, SHTS, and water/steam system are individually verified by comparisons with the conventional calculations. Comparisons are also made with the actually measured plant behavior up to 40% rated power conditions to confirm the calculation adequacy and conservativeness of the input data. The unified analytical model was applied to analyses of in total 8 anomaly events; reactivity insertion, abnormal power distribution, decrease and increase of coolant flow rate in PHTS, SHTS and water/steam systems. The resulting maximum values and temporal variations of the key parameters in safety evaluation; temperatures of fuel, cladding, in core sodium coolant and RV inlet and outlet coolant have negligible discrepancies against the existing analysis result in the annex to the construction permit application, verifying the unified analytical model. These works have enabled analytical evaluation of Monju core heat removal capability by Super-COPD utilizing the

Uranium Speciation and Bioavailability in Aquatic Systems: An Overview

Directory of Open Access Journals (Sweden)

Scott J. Markich

2002-01-01

Full Text Available The speciation of uranium (U in relation to its bioavailability is reviewed for surface waters (fresh- and seawater and their sediments. A summary of available analytical and modeling techniques for determining U speciation is also presented. U(VI is the major form of U in oxic surface waters, while U(IV is the major form in anoxic waters. The bioavailability of U (i.e., its ability to bind to or traverse the cell surface of an organism is dependent on its speciation, or physicochemical form. U occurs in surface waters in a variety of physicochemical forms, including the free metal ion (U4+ or UO22+ and complexes with inorganic ligands (e.g., uranyl carbonate or uranyl phosphate, and humic substances (HS (e.g., uranyl fulvate in dissolved, colloidal, and/or particulate forms. Although the relationship between U speciation and bioavailability is complex, there is reasonable evidence to indicate that UO22+ and UO2OH+ are the major forms of U(VI available to organisms, rather than U in strong complexes (e.g., uranyl fulvate or adsorbed to colloidal and/or particulate matter. U(VI complexes with inorganic ligands (e.g., carbonate or phosphate and HS apparently reduce the bioavailability of U by reducing the activity of UO22+ and UO2OH+. The majority of studies have used the results from thermodynamic speciation modeling to support these conclusions. Time-resolved laser-induced fluorescence spectroscopy is the only analytical technique able to directly determine specific U species, but is limited in use to freshwaters of low pH and ionic strength. Nearly all of the available information relating the speciation of U to its bioavailability has been derived using simple, chemically defined experimental freshwaters, rather than natural waters. No data are available for estuarine or seawater. Furthermore, there are no available data on the relationship between U speciation and bioavailability in sediments. An understanding of this relationship has been

Influence of uranyl speciation and iron oxides on uranium biogeochemical redox reactions

Energy Technology Data Exchange (ETDEWEB)

Stewart, B.D.; Amos, R.T.; Nico, P.S.; Fendorf, S.

2010-03-15

Uranium is a pollutant of concern to both human and ecosystem health. Uranium's redox state often dictates its partitioning between the aqueous- and solid-phases, and thus controls its dissolved concentration and, coupled with groundwater flow, its migration within the environment. In anaerobic environments, the more oxidized and mobile form of uranium (UO{sub 2}{sup 2+} and associated species) may be reduced, directly or indirectly, by microorganisms to U(IV) with subsequent precipitation of UO{sub 2}. However, various factors within soils and sediments may limit biological reduction of U(VI), inclusive of alterations in U(VI) speciation and competitive electron acceptors. Here we elucidate the impact of U(VI) speciation on the extent and rate of reduction with specific emphasis on speciation changes induced by dissolved Ca, and we examine the impact of Fe(III) (hydr)oxides (ferrihydrite, goethite and hematite) varying in free energies of formation on U reduction. The amount of uranium removed from solution during 100 h of incubation with S. putrefaciens was 77% with no Ca or ferrihydrite present but only 24% (with ferrihydrite) and 14% (no ferrihydrite) were removed for systems with 0.8 mM Ca. Imparting an important criterion on uranium reduction, goethite and hematite decrease the dissolved concentration of calcium through adsorption and thus tend to diminish the effect of calcium on uranium reduction. Dissimilatory reduction of Fe(III) and U(VI) can proceed through different enzyme pathways, even within a single organism, thus providing a potential second means by which Fe(III) bearing minerals may impact U(VI) reduction. We quantify rate coefficients for simultaneous dissimilatory reduction of Fe(III) and U(VI) in systems varying in Ca concentration (0 to 0.8 mM), and using a mathematical construct implemented with the reactive transport code MIN3P, we reveal the predominant influence of uranyl speciation, specifically the formation of uranyl

The contribution of chemical speciation to internal dosimetry

International Nuclear Information System (INIS)

Paquet, F.; Frelon, S.; Cote, G.; Madic, C.

2003-01-01

Speciation studies refer to the distribution of species in a particular sample or matrix. These studies are necessary to improve the description, understanding and prediction of trace element kinetics and toxicity. In the case of internal contamination with radionuclides, speciation studies could help to improve both the biokinetic and dosimetric models for radionuclides. There are different methods to approach the speciation of radionuclides in a biological system, depending on the degree of accuracy needed and the level of uncertainties accepted. Among them, computer modelling and experimental determination are complementary approaches. This paper describes what is known about speciation of actinides in blood, GI tract, liver and skeleton and of their consequences in terms of internal dosimetry. The conclusion is that such studies provide very valuable data and should be targeted in the future on some specific tissues and biomolecules. (author)

OECD International Standard Problem number 34. Falcon code comparison report

International Nuclear Information System (INIS)

Williams, D.A.

1994-12-01

ISP-34 is the first ISP to address fission product transport issues and has been strongly supported by a large number of different countries and organisations. The ISP is based on two experiments, FAL-ISP-1 and FAL-ISP-2, which were conducted in AEA's Falcon facility. Specific features of the experiments include quantification of chemical effects and aerosol behaviour. In particular, multi-component aerosol effects and vapour-aerosol interactions can all be investigated in the Falcon facility. Important parameters for participants to predict were the deposition profiles and composition, key chemical species and reactions, evolution of suspended material concentrations, and the effects of steam condensation onto aerosols and particle hygroscopicity. The results of the Falcon ISP support the belief that aerosol physics is generally well modelled in primary circuit codes, but the chemistry models in many of the codes need to be improved, since chemical speciation is one of the main factors which controls transport and deposition behaviour. The importance of chemical speciation, aerosol nucleation, and the role of multi-component aerosols in determining transport and deposition behaviour are evident. The role of re-vaporization in these Falcon experiments is not clear; it is not possible to compare those codes which predicted re-vaporization with quantitative data. The evidence from this ISP exercise indicates that the containment codes can predict thermal-hydraulics conditions satisfactorily. However, the differences in the predicted aerosol locations in the Falcon tests had shown that aerosol behaviour was very susceptible to parameters such as particle size distribution

Sexual selection and magic traits in speciation with gene flow

Directory of Open Access Journals (Sweden)

Maria R. SERVEDIO, Michael KOPP

2012-06-01

Full Text Available The extent to which sexual selection is involved in speciation with gene flow remains an open question and the subject of much research. Here, we propose that some insight can be gained from considering the concept of magic traits (i.e., traits involved in both reproductive isolation and ecological divergence. Both magic traits and other, “non-magic”, traits can contribute to speciation via a number of specific mechanisms. We argue that many of these mechanisms are likely to differ widely in the extent to which they involve sexual selection. Furthermore, in some cases where sexual selection is present, it may be prone to inhibit rather than drive speciation. Finally, there are a priori reasons to believe that certain categories of traits are much more effective than others in driving speciation. The combination of these points suggests a classification of traits that may shed light on the broader role of sexual selection in speciation with gene flow. In particular, we suggest that sexual selection can act as a driver of speciation in some scenarios, but may play a negligible role in potentially common categories of magic traits, and may be likely to inhibit speciation in common categories of non-magic traits [Current Zoology 58 (3: 507–513, 2012].

Numerical Analysis of Dusty-Gas Flows

Science.gov (United States)

Saito, T.

2002-02-01

This paper presents the development of a numerical code for simulating unsteady dusty-gas flows including shock and rarefaction waves. The numerical results obtained for a shock tube problem are used for validating the accuracy and performance of the code. The code is then extended for simulating two-dimensional problems. Since the interactions between the gas and particle phases are calculated with the operator splitting technique, we can choose numerical schemes independently for the different phases. A semi-analytical method is developed for the dust phase, while the TVD scheme of Harten and Yee is chosen for the gas phase. Throughout this study, computations are carried out on SGI Origin2000, a parallel computer with multiple of RISC based processors. The efficient use of the parallel computer system is an important issue and the code implementation on Origin2000 is also described. Flow profiles of both the gas and solid particles behind the steady shock wave are calculated by integrating the steady conservation equations. The good agreement between the pseudo-stationary solutions and those from the current numerical code validates the numerical approach and the actual coding. The pseudo-stationary shock profiles can also be used as initial conditions of unsteady multidimensional simulations.

Code-experiment comparison on wall condensation tests in the presence of non-condensable gases-Numerical calculations for containment studies

Energy Technology Data Exchange (ETDEWEB)

Malet, J., E-mail: jeanne.malet@irsn.fr [Institut de Radioprotection et de Surete Nucleaire (IRSN), PSN-RES, SCA, BP 68, 91192 Gif-sur-Yvette (France); Porcheron, E.; Dumay, F.; Vendel, J. [Institut de Radioprotection et de Surete Nucleaire (IRSN), PSN-RES, SCA, BP 68, 91192 Gif-sur-Yvette (France)

2012-12-15

Highlights: Black-Right-Pointing-Pointer Steam condensation on walls has been investigated in the TOSQAN vessel. Black-Right-Pointing-Pointer Experiments on 7 different tests have been performed. Black-Right-Pointing-Pointer Different steam injections and wall temperatures are used. Black-Right-Pointing-Pointer Simulations are performed in 2D using the TONUS code. Black-Right-Pointing-Pointer Code-experiments comparisons at many different locations show a good agreement. - Abstract: During the course of a severe Pressurized Water Reactor accident, pressurization of the containment occurs and hydrogen can be produced by the reactor core oxidation and distributed in the containment according to convection flows and wall condensation. Filmwise wall condensation in the presence of non-condensable gases is a subject of many interests and extensive studies have been performed in the past. Some empirical correlations have demonstrated their limit for extrapolation under different thermal-hydraulic conditions and at different geometries/scales. The French Institute for Radiological Protection and Nuclear Safety (IRSN) has developed a numerical tool and an experimental facility in order to investigate free convection flows in the presence of condensation. The objective of this paper is to present numerical results obtained on different wall condensation tests in 7 m{sup 3} volume vessel (TOSQAN facility), and to compare them with the experimental ones. Over eight tests are considered here, and code-experiment comparison is performed on many different locations, giving an extensive insight of the code assessment for air-steam mixture flows involving wall condensation in the presence of non-condensable gases.

What do we need to know about speciation?

NARCIS (Netherlands)

Butlin, Roger; Debelle, Allan; Kerth, Claudius; Snook, Rhonda R.; Beukeboom, Leo W.; Castillo Cajas, Ruth; Diao, Wenwen; Maan, Martine E.; Paolucci, Silvia; Weissing, Franz J.; van de Zande, Louis; Hoikkala, Anneli; Geuverink, Elzemiek; Jennings, Jackson; Kankare, Maaria; Knott, K. Emily; Tyukmaeva, Venera I.; Zoumadakis, Christos; Ritchie, Michael G.; Barker, Daniel; Immonen, Elina; Kirkpatrick, Mark; Noor, Mohamed; Macias Garcia, Constantino; Schmitt, Thomas; Schilthuizen, Menno

Speciation has been a major focus of evolutionary biology research in recent years, with many important advances. However, some of the traditional organising principles of the subject area no longer provide a satisfactory framework, such as the classification of speciation mechanisms by geographical

The 1963 Vajont landslide (Italy) simulated through a numerical 2D code

Science.gov (United States)

Zaniboni, Filippo; Ausilia Paparo, Maria; Elsen, Katharina; Tinti, Stefano

2013-04-01

On October 9th, 1963, a huge mass of about 260 million m3 collapsed along Mt. Toc flank into the artificial lake called Vajont and generated a gigantic wave that invested the town of Longarone (North-East Italy, about 100 km north of Venice), provoking about 2000 casualties. The event started a public debate on the responsibilities for the disaster, and also raised crucial issues for the scientific and engineering community, regarding reservoir flank instability and safety of the hydroelectric plant. The peculiar features of the event were immediately evident. The clay layers remained uncovered in the upper part of the detachment niche, supporting the hypothesis of a well-defined pre-existing sliding surface, that could explain the high falling velocity (around 20 m/s as a maximum) and the compactness of the deposit layers that were found to sit almost unperturbed on the bottom of the valley. The numerical study presented here contributes to the understanding of dynamics of the Vajont landslide. It is found that the accurate knowledge of the pre- and post-slide morphology provides tight constraints on the parameters of the numerical model, that are tuned to fit the observed deposit. Numerical simulations are carried out by means of the in-house built code UBO-BLOCK2. The initial sliding body is divided into a mesh of interacting volume-conserving blocks, whose motion is computed numerically. The friction coefficient at the base of the landslide is determined through a best fit search by maximizing the degree of overlapping between the calculated and observed deposits. Our best solution is also able to account for the observed slight easterly rotation of the mass, the different behaviors of the eastern and western part of the sliding surface and the retrogressive motion of the slide that after climbing up the opposite flank of the valley reverted velocity to settle down on the bottom of the valley.

Speciation issues in food control - are we ready?

International Nuclear Information System (INIS)

Sloth, J.J.; Hedegaard, R.V.; Julshamn, K.; Trier, X.T.; Larsen, E.H.

2009-01-01

Full text: Our understanding of the mechanisms of biological activities and biotransformation of trace elements has improved during recent years with the help of chemical speciation studies. However, the most important practical application of elemental speciation is in the area of toxicology. Toxicological knowledge on the individual chemical elemental species should lead to more specific legislation of hazardous substances. Presently, European legislation concerning food safety is based on total element concentrations expressed as maximum limits. The lecture focuses on the present situation for speciation in food control and discusses the latest and expected future developments within this area. (author)

Divergence with gene flow across a speciation continuum of Heliconius butterflies.

Science.gov (United States)

Supple, Megan A; Papa, Riccardo; Hines, Heather M; McMillan, W Owen; Counterman, Brian A

2015-09-24

A key to understanding the origins of species is determining the evolutionary processes that drive the patterns of genomic divergence during speciation. New genomic technologies enable the study of high-resolution genomic patterns of divergence across natural speciation continua, where taxa pairs with different levels of reproductive isolation can be used as proxies for different stages of speciation. Empirical studies of these speciation continua can provide valuable insights into how genomes diverge during speciation. We examine variation across a handful of genomic regions in parapatric and allopatric populations of Heliconius butterflies with varying levels of reproductive isolation. Genome sequences were mapped to 2.2-Mb of the H. erato genome, including 1-Mb across the red color pattern locus and multiple regions unlinked to color pattern variation. Phylogenetic analyses reveal a speciation continuum of pairs of hybridizing races and incipient species in the Heliconius erato clade. Comparisons of hybridizing pairs of divergently colored races and incipient species reveal that genomic divergence increases with ecological and reproductive isolation, not only across the locus responsible for adaptive variation in red wing coloration, but also at genomic regions unlinked to color pattern. We observe high levels of divergence between the incipient species H. erato and H. himera, suggesting that divergence may accumulate early in the speciation process. Comparisons of genomic divergence between the incipient species and allopatric races suggest that limited gene flow cannot account for the observed high levels of divergence between the incipient species. Our results provide a reconstruction of the speciation continuum across the H. erato clade and provide insights into the processes that drive genomic divergence during speciation, establishing the H. erato clade as a powerful framework for the study of speciation.

Speciation of long-lived radionuclides in the environment

Energy Technology Data Exchange (ETDEWEB)

Xiaolin Hou

2008-11-15

This project started in November 2005 and ended in November 2008, the work and research approaches are summarized in this report. This project studied the speciation of radionuclides in environment. A number of speciation analytical methods are developed for determination of species of 129I, 99Tc, isotopes of Pu, and 237Np in seawater, fresh water, soil, sediment, vegetations, and concrete. The developed methods are used for the investigation of the chemical speciation of these radionuclides as well as their environmental behaviours, especially in Danish environment. In addition the speciation of Pu isotopes in waste samples from the decommissioning of Danish nuclear facilities is also investigated. The report summarizes these works completed in this project. Through this research project, a number of research papers have been published in the scientific journals, the research results has also been presented in the Nordic and international conference/meeting and communicated to international colleagues. Some publications are also enclosed to this report. (au)

Numerical simulation of L.E.L. in Compton regime. Part II, GONDOLE, a three-dimensional code

International Nuclear Information System (INIS)

Deck, D.

1992-07-01

In the first part of this report, the BIWI two-dimensional numerical simulation code of L.E.L. in Compton regime has been described; the question was to simulate L.E.L. experiments in 'optical mode', that is to say for wavelengths of the order of one micron. The axisymmetric cylindrical geometry (r,z) of the BIWI code is adapted to these experiments. However, the increasingly frequent use of L.E.L. in the regime of microwaves requires the presence of a waveguide within the inverter, which breaks the cylindrical symmetry and forces us to adopt another geometry. On the other hand, the desire to take into account fields of inverters having a gradient in the direction transverse to the direction of propagation of the beam, and thus allowing various focalizations (quadrupole, parabolic, etc.), leads to work in Cartesian geometry. For these reasons (and for others that will appear later), the GONDOLE code has been written and is described in this note. The Gondole code is three-dimensional (x, y, z) and allows to simulate a large variety of L.E.L experiences. Then, all the inverter fields that the GONDOLE code takes into account are introduced. These fields are responsible for the existence of a current J(vector) perpendicular to the Z axis of propagation, and source of radiation. The dynamics of the electrons is then deduced, which derives directly from these fields, and it is shown to which equations of propagation of the laser wave each different J(vector) is coupling [fr

Physical models, cross sections, and numerical approximations used in MCNP and GEANT4 Monte Carlo codes for photon and electron absorbed fraction calculation.

Science.gov (United States)

Yoriyaz, Hélio; Moralles, Maurício; Siqueira, Paulo de Tarso Dalledone; Guimarães, Carla da Costa; Cintra, Felipe Belonsi; dos Santos, Adimir

2009-11-01

Radiopharmaceutical applications in nuclear medicine require a detailed dosimetry estimate of the radiation energy delivered to the human tissues. Over the past years, several publications addressed the problem of internal dose estimate in volumes of several sizes considering photon and electron sources. Most of them used Monte Carlo radiation transport codes. Despite the widespread use of these codes due to the variety of resources and potentials they offered to carry out dose calculations, several aspects like physical models, cross sections, and numerical approximations used in the simulations still remain an object of study. Accurate dose estimate depends on the correct selection of a set of simulation options that should be carefully chosen. This article presents an analysis of several simulation options provided by two of the most used codes worldwide: MCNP and GEANT4. For this purpose, comparisons of absorbed fraction estimates obtained with different physical models, cross sections, and numerical approximations are presented for spheres of several sizes and composed as five different biological tissues. Considerable discrepancies have been found in some cases not only between the different codes but also between different cross sections and algorithms in the same code. Maximum differences found between the two codes are 5.0% and 10%, respectively, for photons and electrons. Even for simple problems as spheres and uniform radiation sources, the set of parameters chosen by any Monte Carlo code significantly affects the final results of a simulation, demonstrating the importance of the correct choice of parameters in the simulation.

Simultaneous speciation of trace elements using chemical separation and neutron activation

International Nuclear Information System (INIS)

Chatt, A.

2003-01-01

Speciation neutron activation analysis (SNAA) is a sophisticated analytical technique which can be developed for studying the simultaneous speciation of a number of elements in a variety of matrices. The advantages of SNAA are demonstrated with typical examples such as (i) arsenic speciation in sea foods and water, and simultaneous speciation of (ii) arsenic, antimony and selenium in water, (iii) chlorine, bromine and iodine in fish, (iv) lanthanides in simulated vitrified waste, and (v) trace elements bound to proteins. (author)

Chemical Speciation - General Information

Science.gov (United States)

This page includes general information about the Chemical Speciation Network that is not covered on the main page. Commonly visited documents, including calendars, site lists, and historical files for the program are listed here

Three Dimensional Numerical Code for the Expanding Flat Universe

Directory of Open Access Journals (Sweden)

Kyoung W. Min

1987-12-01

Full Text Available The current distribution of galaxies may contain clues to the condition of the universe when the galaxies condensed and to the nature of the subsequent expansion of the universe. The development of this large scale structure can be studied by employing N-body computer simulations. The present paper describes the code developed for this purpose. The computer code calculates the motion of collisionless matter action under the force of gravity in an expanding flat universe. The test run of the code shows the error less than 0.5% in 100 iterations.

Some actinide speciation using laser induced photoacoustic spectroscopy

International Nuclear Information System (INIS)

Pollard, P.M.; McMillan, J.W.; Phillips, G.; Thomason, H.P.; Ewart, F.T.

1988-01-01

Laser induced photoacoustic spectroscopy is an attractive method for the speciation of actinides in solutions from nuclear disposal studies because it is essentially non-invasive and has a reasonably high sensitivity, down to ca 10 -8 M. A novel true dual beam system has been constructed and commissioned at Harwell with a performance at least equal to any others in existence. It is based on a XeCl excimer laser and a dye laser, beam splitter, two laser power monitors and photoacoustic cells. The wavelength scanning, data collection, and spectra processing and display are controlled by an Apricot computer. The sample and reference cells are housed in an inert atmosphere glove box. Early applications of the equipment described include measurements of Am and Np species under varying conditions of pH, Eh and carbonate concentration. The observations show some correlation with predictions made using the geochemical modelling code PHREEQE. (orig.)

Insurance billing and coding.

Science.gov (United States)

Napier, Rebecca H; Bruelheide, Lori S; Demann, Eric T K; Haug, Richard H

2008-07-01

The purpose of this article is to highlight the importance of understanding various numeric and alpha-numeric codes for accurately billing dental and medically related services to private pay or third-party insurance carriers. In the United States, common dental terminology (CDT) codes are most commonly used by dentists to submit claims, whereas current procedural terminology (CPT) and International Classification of Diseases, Ninth Revision, Clinical Modification (ICD.9.CM) codes are more commonly used by physicians to bill for their services. The CPT and ICD.9.CM coding systems complement each other in that CPT codes provide the procedure and service information and ICD.9.CM codes provide the reason or rationale for a particular procedure or service. These codes are more commonly used for "medical necessity" determinations, and general dentists and specialists who routinely perform care, including trauma-related care, biopsies, and dental treatment as a result of or in anticipation of a cancer-related treatment, are likely to use these codes. Claim submissions for care provided can be completed electronically or by means of paper forms.

Investigating ecological speciation in non-model organisms

DEFF Research Database (Denmark)

Foote, Andrew David

2012-01-01

Background: Studies of ecological speciation tend to focus on a few model biological systems. In contrast, few studies on non-model organisms have been able to infer ecological speciation as the underlying mechanism of evolutionary divergence. Questions: What are the pitfalls in studying ecological...... speciation in non-model organisms that lead to this bias? What alternative approaches might redress the balance? Organism: Genetically differentiated types of the killer whale (Orcinus orca) exhibiting differences in prey preference, habitat use, morphology, and behaviour. Methods: Review of the literature...... on killer whale evolutionary ecology in search of any difficulty in demonstrating causal links between variation in phenotype, ecology, and reproductive isolation in this non-model organism. Results: At present, we do not have enough evidence to conclude that adaptive phenotype traits linked to ecological...

Review: Speciation in the myrtle family (Myrtaceae: rapid and slow models

Directory of Open Access Journals (Sweden)

PUDJI WIDODO

2007-01-01

Full Text Available Speciation or formation of new species is a process which may take very long time. When a new species is really formed from a previous species is still unknown exactly. However, sometimes when populations no longer interbreed, they are thought to be separate species. As natural selection, if populations adapt the occupying different environments, they will diverge into races, subspecies, and finally separate species. There are some models of speciation such as geographical, polyploidy, chromosomal, and ecological speciation. However, in the myrtle family (Myrtaceae they can be grouped into two big models of speciation namely the rapid and slow speciation. This review points out that hybridization is a major factor affecting Myrtaceae, although evolution activities were also approved by the fact that some fossil pollens have been found in Antartica

The development of chemical speciation analysis

International Nuclear Information System (INIS)

Martin, R.; Santana, J.L.; Lima, L.; De La Rosa, D.; Melchor, K.

2003-01-01

The knowledge of many metals species on the environmental, its bioaccumulation, quantification and its effect in human body has been studied by a wide researchers groups in the last two decades. The development of speciation analysis has an vertiginous advance close to the developing of novel analytical techniques. Separation and quantification at low level is a problem that's has been afford by a coupling of high resolution chromatographic techniques like HPLC and HRGC with a specific method of detection (ICP-MS or CV-AAS). This methodological approach make possible the success in chemical speciation nowadays

Self-consistent approach for neutral community models with speciation

NARCIS (Netherlands)

Haegeman, Bart; Etienne, Rampal S.

Hubbell's neutral model provides a rich theoretical framework to study ecological communities. By incorporating both ecological and evolutionary time scales, it allows us to investigate how communities are shaped by speciation processes. The speciation model in the basic neutral model is

Anaerobic Digestion Alters Copper and Zinc Speciation.

Science.gov (United States)

Legros, Samuel; Levard, Clément; Marcato-Romain, Claire-Emmanuelle; Guiresse, Maritxu; Doelsch, Emmanuel

2017-09-19

Anaerobic digestion is a widely used organic waste treatment process. However, little is known on how it could alter the speciation of contaminants in organic waste. This study was focused on determining the influence of anaerobic digestion on the speciation of copper and zinc, two metals that generally occur at high concentration in organic waste. Copper and zinc speciation was investigated by X-ray absorption spectroscopy in four different raw organic wastes (predigestion) and their digested counterparts (postdigestion, i.e., digestates). The results highlighted an increase in the digestates of the proportion of amorphous or nanostructured copper sulfides as well as amorphous or nanostructured zinc sulfides and zinc phosphate as compared to raw waste. We therefore suggest that the environmental fate of these elements would be different when spreading either digestates or raw waste on cropland.

Chemval project report on stage 1: verification of speciation models

International Nuclear Information System (INIS)

Read, D.; Broyd, T.W.

1989-01-01

CHEMVAL is an international geochemical exercise, which aims at applicating and validating predictive computer programmes describing the chemistry of radionuclides in the geosphere. As a component of the CEC project MIRAGE- second phase (on migration of radionuclides in the geosphere), CHEMVAL is carried out in the framework of the third community R and D programme of radioactive waste management and storage. The present report is the first of a series devoted to the verification and validation of aqueous speciation and coupled chemical transport codes. Five cases systems are studied, namely, cement, clay, sandstore, granite and limestone. Overall, good agreement was obtained. Reasons for divergence in results have been explored and recommendations are made at the appropriate stages for enhancement of the thermodynamic data base. A listing of the preliminary CHEMVAL Project Data Base is provided

The neutral theory of biodiversity with random fission speciation

NARCIS (Netherlands)

Etienne, Rampal S.; Haegeman, Bart

The neutral theory of biodiversity and biogeography emphasizes the importance of dispersal and speciation to macro-ecological diversity patterns. While the influence of dispersal has been studied quite extensively, the effect of speciation has not received much attention, even though it was already

EPA’s SPECIATE 4.4 Database - Development and Uses

Science.gov (United States)

SPECIATE is the EPA's repository of TOG, PM, and Other Gases speciation profiles of air pollution sources. It includes weight fractions of both organic species and PM and provides data in consistent units. Species include metals, ions, elements, and organic and inorganic compound...

Finite element circuit theory of the numerical code EDDYMULT for solving eddy current problems in a multi-torus system

International Nuclear Information System (INIS)

Nakamura, Yukiharu; Ozeki, Takahisa

1986-07-01

The finite element circuit theory is extended to the general eddy current problem in a multi-torus system, which consists of various torus conductors and axisymmetric coil systems. The numerical procedures are devised to avoid practical restrictions of computer storage and computing time, that is, the reduction technique of eddy current eigen modes to save storage and the introduction of shape function into the double area integral of mode coupling to save time. The numerical code EDDYMULT based on the theory is developed to use in designing tokamak device from the viewpoints of the evaluation of electromagnetic loading on the device components and the control analysis of tokamak equilibrium. (author)

Searching for speciation genes

DEFF Research Database (Denmark)

Holt, Benjamin George; Côté, Isabelle M; Emerson, Brent C

2011-01-01

Closely related species that show clear phenotypic divergence, but without obvious geographic barriers, can provide opportunities to study how diversification can occur when opportunities for allopatric speciation are limited. We examined genetic divergence in the coral reef fish genus Hypoplectrus...

Speciation environments and centres of diversity in southern Africa. I. Conceptual framework

Directory of Open Access Journals (Sweden)

E. R. Robinson

1982-10-01

Full Text Available A knowledge of the nature and distribution of the environments where speciation (micro-evolution is or has been rapid would help explain plant distributions and give insight into the mechanisms of plant evolution. Before southern African speciation environments can be identified and described, a number of basic theoretical concepts have to be clarified. In this paper the major taxonomic, systematic, floristic, ecological and evolutionary ideas pertinent to speciation environments are reviewed and discussed. Despite many publications about species concepts, species diversity, modes of speciation and the relationship between environments and genetic variability within taxa, it is still not possible to make predictions about the kinds of environments that favour speciation.

Numerical solution of conservation equations in the transient model for the system thermal - hydraulics in the Korsar computer code

International Nuclear Information System (INIS)

Yudov, Y.V.

2001-01-01

The functional part of the KORSAR computer code is based on the computational unit for the reactor system thermal-hydraulics and other thermal power systems with water cooling. The two-phase flow dynamics of the thermal-hydraulic network is modelled by KORSAR in one-dimensional two-fluid (non-equilibrium and nonhomogeneous) approximation with the same pressure of both phases. Each phase is characterized by parameters averaged over the channel sections, and described by the conservation equations for mass, energy and momentum. The KORSAR computer code relies upon a novel approach to mathematical modelling of two-phase dispersed-annular flows. This approach allows a two-fluid model to differentiate the effects of the liquid film and droplets in the gas core on the flow characteristics. A semi-implicit numerical scheme has been chosen for deriving discrete analogs the conservation equations in KORSAR. In the semi-implicit numerical scheme, solution of finite-difference equations is reduced to the problem of determining the pressure field at a new time level. For the one-channel case, the pressure field is found from the solution of a system of linear algebraic equations by using the tri-diagonal matrix method. In the branched network calculation, the matrix of coefficients in the equations describing the pressure field is no longer tri-diagonal but has a sparseness structure. In this case, the system of linear equations for the pressure field can be solved with any of the known classical methods. Such an approach is implemented in the existing best-estimate thermal-hydraulic computer codes (TRAC, RELAP5, etc.) For the KORSAR computer code, we have developed a new non-iterative method for calculating the pressure field in the network of any topology. This method is based on the tri-diagonal matrix method and performs well when solving the thermal-hydraulic network problems. (author)

Comparison of analytical charge-form and equilibrium thermodynamic speciation of certain radionuclides

International Nuclear Information System (INIS)

Jenne, E.A.; Cowan, C.E.; Robertson, D.E.

1984-01-01

Calculating trace element speciation with a thermodynamic model is often challenged on the basis that the existing thermodynamic data are not sufficiently reliable. Water quality data and corresponding analytical charge-form speciation analysis were available for radionuclides occurring in a low-level radioactive groundwater. This offered an opportunity for comparing the results of an equilibrium thermodynamic model with the results of analytical charge-form speciation. The charge-form speciation was determined using the Battelle Large Volume Water Sampler, which contains consecutive layers of cation resin, anion resin and activated aluminum oxide for retention of cationic, anionic and non-ionic dissolved chemical species, respectively. The thermodynamic speciation of Cs, Cr, Fe, I, Mn, Mo, Na, and Zn was calculated using the MINTEQ geochemical model. Ce, Co, Tc, Np, Pm, and Sb were speciated by hand calculation. Excellent agreement between the analytically determined charge-form and the thermodynamic speciation was observed for 54 Mn, 144 Ce, 131 I, 24 Na, 137 Cs, 99 Mo, 99 Tc, 151 Pm, 239 Np. Organic complexation by natural and/or synthetic organics in the waters may be important in the speciation of 65 An, 60 Co, 131 I, 59 Fe and possibly 51 Cr. Both 124 Sb and 125 Sb appeared to be in redox disequilibria with the groundwater. 29 references, 2 tables

Solubility and speciation results from oversaturation experiments on neptunium, plutonium and americium in a neutral electrolyte with a total carbonate similar to water from Yucca Mountain Region Well UE- 25p No. 1

International Nuclear Information System (INIS)

Torretto, P.; Becraft, K.; Prussin, T.; Roberts, K.; Carpenter, S.; Hobart, D.; Nitsche, H.

1995-12-01

Solubility and speciation are important in understanding aqueous radionuclide transport through the geosphere. They define the source term for transport retardation processes such as sorption and colloid formation. Solubility and speciation data are useful in verifying the validity of geochemical codes that are a part of predictive transport models. Solubility experiments will approach solution equilibrium from both oversaturation and undersaturation. In these experiments, we have approached the solubility equilibrium from oversaturation, Results are given for solubility and speciation experiments from oversaturation of 237 NpO 2 + 239 Pu 4+ , and 241 Am 3+ /Nd 3+ in a neutral electrolyte containing a total carbonate concentration similar to groundwater from the Yucca Mountain region, Nevada, which is being investigated as a potential high-level nuclear waste disposal site, at 25 degrees C and three pH values. In these experiments, the solubilitycontrolling steady-state solids were identified and the speciation and/or oxidation states present in the supernatant solutions were determined

Two-phase flow characteristics analysis code: MINCS

International Nuclear Information System (INIS)

Watanabe, Tadashi; Hirano, Masashi; Akimoto, Masayuki; Tanabe, Fumiya; Kohsaka, Atsuo.

1992-03-01

Two-phase flow characteristics analysis code: MINCS (Modularized and INtegrated Code System) has been developed to provide a computational tool for analyzing two-phase flow phenomena in one-dimensional ducts. In MINCS, nine types of two-phase flow models-from a basic two-fluid nonequilibrium (2V2T) model to a simple homogeneous equilibrium (1V1T) model-can be used under the same numerical solution method. The numerical technique is based on the implicit finite difference method to enhance the numerical stability. The code structure is highly modularized, so that new constitutive relations and correlations can be easily implemented into the code and hence evaluated. A flow pattern can be fixed regardless of flow conditions, and state equations or steam tables can be selected. It is, therefore, easy to calculate physical or numerical benchmark problems. (author)

Numerical simulation of the floods in Villahermosa Mexico using the IBER code

Directory of Open Access Journals (Sweden)

J.C. González-Aguirre

2016-10-01

Full Text Available Floods are a problem that may occur in many parts of the world, but in certain places it happens more frequently, for example in Villahermosa, Mexico, which can be confirmed with the floods of 2000, 2007, 2009 and 2010. In this work the IBER code is used (freely available at http://www.iberaula.es to recreate the scenarios occurred in October 2007, and the numerical results are compared with data provided/collected by CONAGUA in the Hydrometeorological station Gaviotas. The scenarios of the 1st October, 30th October and 31st October were simulated. A steady state was obtained in the simulation of the 1st October, this state was used as initial condition for the simulation of the 30th October, in which are reproduced the conditions of the 31st October. In addition, a sensibility analysis was carried out for the wetting drying parameter and the Courant number.

Chemical speciation of long-lived radionuclides in the environment

International Nuclear Information System (INIS)

Xiaolin Hou

2008-11-01

This project started in November 2005 and ended in November 2008, the work and research approaches are summarized in this report. This project studied the speciation of radionuclides in environment. A number of speciation analytical methods are developed for determination of species of 129 I, 99 Tc, isotopes of Pu, and 237 Np in seawater, fresh water, soil, sediment, vegetations, and concrete. The developed methods are used for the investigation of the chemical speciation of these radionuclides as well as their environmental behaviours, especially in Danish environment. In addition the speciation of Pu isotopes in waste samples from the decommissioning of Danish nuclear facilities is also investigated. The report summarizes these works completed in this project. Through this research project, a number of research papers have been published in the scientific journals, the research results has also been presented in the Nordic and international conference/meeting and communicated to international colleagues. Some publications are also enclosed to this report. (au)

Numerical Analyses of a single-phase natural convection system for Molten Flibe using MARS-FLIBE code

Energy Technology Data Exchange (ETDEWEB)

Kang, Sarah; Bang, In Cheol [Ulsan National Institute of Science and Technology, Ulsan (Korea, Republic of)

2014-10-15

These advantages make the MSR attractive and to be one of the six candidates for the Generation IV Reactor. Therefore, the researches related to the MSR are being conducted. To analyze the molten salt-cooled systems in the laboratory, this study generated the properties of molten salt using MARS-LMR. In this research, the implemented salts were Flibe (LiF-BeF{sub 2}) in a molar mixture that is 66% LiF and 34% BeF{sub 2}, respectively. Table 1 indicates the comparison of thermal properties of various coolants in nuclear power plants. Molten salt was added to the MARS-LMR code to support the analysis of Flibe-cooled systems. The molten salt includes LiF-BeF{sub 2} in a molar mixture that is 66% LiF and 34% BeF{sub 2}, respectively. MARS-LMR code for liquid metals uses the soft sphere model based on Monte Carlo calculations for particles interacting with pair potentials. Although MARS was originally intended for a safety analysis of light water reactor, Flibe properties were newly added to this code as so-called MARS-FLIBE which is applicable for Flibe-cooled systems. By using this thermodynamic property table file, the thermal hydraulic systems of Flibe can be simulated for numerical and parametric studies. In this study, the natural convection phenomena in the rectangular natural convection loop and IVR-ERVC in APR 1400 were simulated. Through the simulations in Flibe-cooled systems, the temperature distribution and mass flowrate of Flibe can be calculated and the heat transfer coefficients of Flibe in natural convection loop will be calculated by adding the related heat transfer correlations in the MARS-FLIBE code. MARS-FLIBE code will be used to predict and design of Flibe-cooled systems.

From the direct numerical simulation to system codes-perspective for the multi-scale analysis of LWR thermal hydraulics

International Nuclear Information System (INIS)

Bestion, D.

2010-01-01

A multi-scale analysis of water-cooled reactor thermal hydraulics can be used to take advantage of increased computer power and improved simulation tools, including Direct Numerical Simulation (DNS), Computational Fluid Dynamics (CFD) (in both open and porous mediums), and system thermalhydraulic codes. This paper presents a general strategy for this procedure for various thermalhydraulic scales. A short state of the art is given for each scale, and the role of the scale in the overall multi-scale analysis process is defined. System thermalhydraulic codes will remain a privileged tool for many investigations related to safety. CFD in porous medium is already being frequently used for core thermal hydraulics, either in 3D modules of system codes or in component codes. CFD in open medium allows zooming on some reactor components in specific situations, and may be coupled to the system and component scales. Various modeling approaches exist in the domain from DNS to CFD which may be used to improve the understanding of flow processes, and as a basis for developing more physically based models for macroscopic tools. A few examples are given to illustrate the multi-scale approach. Perspectives for the future are drawn from the present state of the art and directions for future research and development are given

Patterns of plant speciation in the Cape floristic region.

Science.gov (United States)

van der Niet, Timotheüs; Johnson, Steven D

2009-04-01

Plant species have accumulated in the Cape region of southern Africa to a much greater degree than in areas of equivalent size in the rest of the subcontinent. Although this could be a consequence simply of lower extinction rates in the Cape, most researchers have invoked high rates of ecological speciation, driven by unique aspects of the Cape environment, as the primary explanation for this richness. To assess these ideas, we analyzed the frequencies of ecological shifts among 188 sister species pairs obtained from molecular phylogenies of eight Cape clades. Ecological shifts were evident in 80% of sister species pairs, with general habitat, pollinator, and fire-survival strategy shifts being especially frequent. Contrary to an established idea that shifts in soil type are frequently associated with speciation of Cape taxa, these shifts were relatively rare, occurring in just 17% of species pairs. More cases of sister species divergence are accompanied solely by floral than by vegetative diversification, suggesting an important role for pollinator-driven speciation. In an analysis of two large orchid genera that have radiated in both the Cape and the rest of southern Africa, the frequency of ecological shifts (general habitat, soil type, altitude and flowering time), did not differ between sister species pairs in the Cape region and those outside it. Despite suggestions that Cape plants tend to have small range sizes and show fine-scale patterns of speciation, range size did not differ significantly between species in the Cape and those outside it. We conclude that ecological speciation is likely to have been important for radiation of the Cape flora, but there is no evidence as yet for special "Cape" patterns of ecological speciation.

Speciation of trace elements in the environmental studies

International Nuclear Information System (INIS)

Reddy, A.V.R.

2012-01-01

Elements present at trace levels, often referred as trace elements, play an important role in the environment and in the functioning of life on our planet. Trace elements in environment present as free metal ions or incorporated into colloids or attached to particulate matter or exist in different physical and chemical forms. It is well established that some elements are highly toxic and some are essential, but can become toxic at higher doses. It is also now known that the forms of elements (speciation) and their amounts are more important than the chemical dose of the elements as their interaction depends on different species. For example, Cr(VI) ions are considered far more toxic than Cr(III), whereas As(III) is more toxic than As(V). Similarly, in the case of mercury, both methylmercury and inorganic mercury are toxic but they show different levels of toxicity. Thus the adverse effects depend on the nature of species of the elements and therefore speciation studies are of paramount importance in many areas like toxicology, environmental chemistry and geochemisty. In view of this, speciation studies is a challenge to analytical chemists as the measurement methodologies have to be carefully developed, validated and applied. The grand challenge is to obtain quality data ensuring traceability, as the data obtained will be used in modeling for predicting the environmental impacts. In this talk importance of speciation and challenges to environmental analytical chemists will be discussed along with the following three speciation studies on Cr, U and Hg which were carried out in our laboratories

Numeral series hidden in the distribution of atomic mass of amino acids to codon domains in the genetic code.

Science.gov (United States)

Wohlin, Åsa

2015-03-21

The distribution of codons in the nearly universal genetic code is a long discussed issue. At the atomic level, the numeral series 2x(2) (x=5-0) lies behind electron shells and orbitals. Numeral series appear in formulas for spectral lines of hydrogen. The question here was if some similar scheme could be found in the genetic code. A table of 24 codons was constructed (synonyms counted as one) for 20 amino acids, four of which have two different codons. An atomic mass analysis was performed, built on common isotopes. It was found that a numeral series 5 to 0 with exponent 2/3 times 10(2) revealed detailed congruency with codon-grouped amino acid side-chains, simultaneously with the division on atom kinds, further with main 3rd base groups, backbone chains and with codon-grouped amino acids in relation to their origin from glycolysis or the citrate cycle. Hence, it is proposed that this series in a dynamic way may have guided the selection of amino acids into codon domains. Series with simpler exponents also showed noteworthy correlations with the atomic mass distribution on main codon domains; especially the 2x(2)-series times a factor 16 appeared as a conceivable underlying level, both for the atomic mass and charge distribution. Furthermore, it was found that atomic mass transformations between numeral systems, possibly interpretable as dimension degree steps, connected the atomic mass of codon bases with codon-grouped amino acids and with the exponent 2/3-series in several astonishing ways. Thus, it is suggested that they may be part of a deeper reference system. Copyright © 2015 The Author. Published by Elsevier Ltd.. All rights reserved.

Numerical Methods for Radiation Magnetohydrodynamics in Astrophysics

Energy Technology Data Exchange (ETDEWEB)

Klein, R I; Stone, J M

2007-11-20

We describe numerical methods for solving the equations of radiation magnetohydrodynamics (MHD) for astrophysical fluid flow. Such methods are essential for the investigation of the time-dependent and multidimensional dynamics of a variety of astrophysical systems, although our particular interest is motivated by problems in star formation. Over the past few years, the authors have been members of two parallel code development efforts, and this review reflects that organization. In particular, we discuss numerical methods for MHD as implemented in the Athena code, and numerical methods for radiation hydrodynamics as implemented in the Orion code. We discuss the challenges introduced by the use of adaptive mesh refinement in both codes, as well as the most promising directions for future developments.

Numerical Methods for Radiation Magnetohydrodynamics in Astrophysics

International Nuclear Information System (INIS)

Klein, R I; Stone, J M

2007-01-01

We describe numerical methods for solving the equations of radiation magnetohydrodynamics (MHD) for astrophysical fluid flow. Such methods are essential for the investigation of the time-dependent and multidimensional dynamics of a variety of astrophysical systems, although our particular interest is motivated by problems in star formation. Over the past few years, the authors have been members of two parallel code development efforts, and this review reflects that organization. In particular, we discuss numerical methods for MHD as implemented in the Athena code, and numerical methods for radiation hydrodynamics as implemented in the Orion code. We discuss the challenges introduced by the use of adaptive mesh refinement in both codes, as well as the most promising directions for future developments

Speciation driven by hybridization and chromosomal plasticity in a wild yeast.

Science.gov (United States)

Leducq, Jean-Baptiste; Nielly-Thibault, Lou; Charron, Guillaume; Eberlein, Chris; Verta, Jukka-Pekka; Samani, Pedram; Sylvester, Kayla; Hittinger, Chris Todd; Bell, Graham; Landry, Christian R

2016-01-11

Hybridization is recognized as a powerful mechanism of speciation and a driving force in generating biodiversity. However, only few multicellular species, limited to a handful of plants and animals, have been shown to fulfil all the criteria of homoploid hybrid speciation. This lack of evidence could lead to the interpretation that speciation by hybridization has a limited role in eukaryotes, particularly in single-celled organisms. Laboratory experiments have revealed that fungi such as budding yeasts can rapidly develop reproductive isolation and novel phenotypes through hybridization, showing that in principle homoploid speciation could occur in nature. Here, we report a case of homoploid hybrid speciation in natural populations of the budding yeast Saccharomyces paradoxus inhabiting the North American forests. We show that the rapid evolution of chromosome architecture and an ecological context that led to secondary contact between nascent species drove the formation of an incipient hybrid species with a potentially unique ecological niche.

Arsenic speciation and sorption in natural environments

Science.gov (United States)

Campbell, Kate M.; Nordstrom, D. Kirk

2014-01-01

Aqueous arsenic speciation, or the chemical forms in which arsenic exists in water, is a challenging, interesting, and complicated aspect of environmental arsenic geochemistry. Arsenic has the ability to form a wide range of chemical bonds with carbon, oxygen, hydrogen, and sulfur, resulting in a large variety of compounds that exhibit a host of chemical and biochemical properties. Besides the intriguing chemical diversity, arsenic also has the rare capacity to capture our imaginations in a way that few elements can duplicate: it invokes images of foul play that range from sinister to comedic (e.g., “inheritance powder” and arsenic-spiked elderberry wine). However, the emergence of serious large-scale human health problems from chronic arsenic exposure in drinking water has placed a high priority on understanding environmental arsenic mobility, toxicity, and bioavailability, and chemical speciation is key to these important questions. Ultimately, the purpose of arsenic speciation research is to predict future occurrences, mitigate contamination, and provide successful management of water resources.

Speciation and internal dosimetry: from chemical species to dosimetric models

International Nuclear Information System (INIS)

Paquet, F.; Frelon, S.; Cote, G.; Madic, C.

2004-01-01

Speciation studies refer to the distribution of species in a particular sample or matrix. These studies are necessary to improve the description, understanding and prediction of trace element kinetics and toxicity. In case of internal contamination with radionuclides, speciation studies could help to improve both the biokinetic and dosimetric models for radionuclides. There are different methods to approach the speciation of radionuclide in a biological system, depending on the degree of accuracy needed and the level of uncertainties accepted. Among them, computer modelling and experimental determination are complementary approaches. This paper describes what is known about speciation of actinides in blood, GI-tract, liver and skeleton and of their consequences in terms of internal dosimetry. The conclusion is that such studies provide very valuable data and should be targeted in the future on some specific tissues and biomolecules. (authors)

The genetics of speciation by reinforcement.

Directory of Open Access Journals (Sweden)

Daniel Ortiz-Barrientos

2004-12-01

Full Text Available Reinforcement occurs when natural selection strengthens behavioral discrimination to prevent costly interspecies matings, such as when matings produce sterile hybrids. This evolutionary process can complete speciation, thereby providing a direct link between Darwin's theory of natural selection and the origin of new species. Here, by examining a case of speciation by reinforcement in Drosophila,we present the first high-resolution genetic study of variation within species for female mating discrimination that is enhanced by natural selection. We show that reinforced mating discrimination is inherited as a dominant trait, exhibits variability within species, and may be influenced by a known set of candidate genes involved in olfaction. Our results show that the genetics of reinforced mating discrimination is different from the genetics of mating discrimination between species, suggesting that overall mating discrimination might be a composite phenomenon, which in Drosophila could involve both auditory and olfactory cues. Examining the genetics of reinforcement provides a unique opportunity for both understanding the origin of new species in the face of gene flow and identifying the genetic basis of adaptive female species preferences, two major gaps in our understanding of speciation.

First passage time to allopatric speciation.

Science.gov (United States)

Yamaguchi, Ryo; Iwasa, Yoh

2013-12-06

Allopatric speciation is a mechanism to evolve reproductive isolation; it is caused by the accumulation of genetic differences between populations while they are geographically isolated. Here, we studied a simple stochastic model for the time until speciation caused by geographical isolation in fragmented populations that experience recurrent but infrequent migration between subpopulations. We assumed that mating incompatibility is controlled by a number of loci that behave as neutral characters in the accumulation of novel mutations within each population. Genetic distance between populations was defined as the number of incompatibility-controlling loci that differ between them. Genetic distance increases through the separate accumulation of mutations in different populations, but decreases after a successful migration event followed by genetic mixing between migrants and residents. We calculated the time to allopatric speciation, which occurs when the genetic distance exceeds a specified threshold. If the number of invasive individuals relative to the resident population is not very large, diffusion approximation provides an accurate prediction. There is an intermediate optimal rate of migration that maximizes the rate of species creation by recurrent invasion and diversification. We also examined cases that involved more than two populations.

Numerical modelling of pressure suppression pools with CFD and FEM codes

Energy Technology Data Exchange (ETDEWEB)

Paettikangas, T.; Niemi, J.; Timperi, A. (VTT Technical Research Centre of Finland (Finland))

2011-06-15

Experiments on large-break loss-of-coolant accident for BWR is modeled with computational fluid (CFD) dynamics and finite element calculations. In the CFD calculations, the direct-contact condensation in the pressure suppression pool is studied. The heat transfer in the liquid phase is modeled with the Hughes-Duffey correlation based on the surface renewal model. The heat transfer is proportional to the square root of the turbulence kinetic energy. The condensation models are implemented with user-defined functions in the Euler-Euler two-phase model of the Fluent 12.1 CFD code. The rapid collapse of a large steam bubble and the resulting pressure source is studied analytically and numerically. Pressure source obtained from simplified calculations is used for studying the structural effects and FSI in a realistic BWR containment. The collapse results in volume acceleration, which induces pressure loads on the pool walls. In the case of a spherical bubble, the velocity term of the volume acceleration is responsible of the largest pressure load. As the amount of air in the bubble is decreased, the peak pressure increases. However, when the water compressibility is accounted for, the finite speed of sound becomes a limiting factor. (Author)

Extensive range overlap between heliconiine sister species: evidence for sympatric speciation in butterflies?

Science.gov (United States)

Rosser, Neil; Kozak, Krzysztof M; Phillimore, Albert B; Mallet, James

2015-06-30

Sympatric speciation is today generally viewed as plausible, and some well-supported examples exist, but its relative contribution to biodiversity remains to be established. We here quantify geographic overlap of sister species of heliconiine butterflies, and use age-range correlations and spatial simulations of the geography of speciation to infer the frequency of sympatric speciation. We also test whether shifts in mimetic wing colour pattern, host plant use and climate niche play a role in speciation, and whether such shifts are associated with sympatry. Approximately a third of all heliconiine sister species pairs exhibit near complete range overlap, and analyses of the observed patterns of range overlap suggest that sympatric speciation contributes 32%-95% of speciation events. Müllerian mimicry colour patterns and host plant choice are highly labile traits that seem to be associated with speciation, but we find no association between shifts in these traits and range overlap. In contrast, climatic niches of sister species are more conserved. Unlike birds and mammals, sister species of heliconiines are often sympatric and our inferences using the most recent comparative methods suggest that sympatric speciation is common. However, if sister species spread rapidly into sympatry (e.g. due to their similar climatic niches), then assumptions underlying our methods would be violated. Furthermore, although we find some evidence for the role of ecology in speciation, ecological shifts did not show the associations with range overlap expected under sympatric speciation. We delimit species of heliconiines in three different ways, based on "strict and " "relaxed" biological species concepts (BSC), as well as on a surrogate for the widely-used "diagnostic" version of the phylogenetic species concept (PSC). We show that one reason why more sympatric speciation is inferred in heliconiines than in birds may be due to a different culture of species delimitation in the two

The use of geochemical speciation modelling to predict the impact of uranium to freshwater biota

International Nuclear Information System (INIS)

Markich, S.J.; Brown, P.L.; Jeffree, R.A.

1996-01-01

Uranium is the prime potential contaminant in mine waste waters that may be released from the Ranger Uranium Mine (RUM) into the receiving waters of the Magela Creek, Alligator Rivers Region, Northern Australia. The potential ecological impact of the migration of uranium, that would result from an elevation in its concentration above background, in the Magela Creek downstream of the RUM, has been experimentally investigated by integrating biomonitoring with geochemical speciation modelling. The freshwater bivalve Velesunio angasi, abundant throughout the Magela Creek catchment, was exposed to a variety of uranium concentrations in a synthetic Magela Creek water, at four pH levels (5.0, 5.3, 5.5 and 6.0), in the presence (3.05 and 7.50 mg l -1 ) and absence of a model fulvic acid (FA), and its behavioural response was measured. Speciation modelling, using the HARPHRQ code, provided evidence that UO 2+ 2 and UO 2 OH + are the uranium species most responsible (ca. 96%) for eliciting an adverse behavioural response when UO 2+ 2 is assigned twice the toxic effect of UO 2 OH + . This finding rejects the notion that biota respond specifically to the sum total of inorganic uranyl species. (orig.)

Bayesian calibration of thermodynamic parameters for geochemical speciation modeling of cementitious materials

International Nuclear Information System (INIS)

Sarkar, S.; Kosson, D.S.; Mahadevan, S.; Meeussen, J.C.L.; Sloot, H. van der; Arnold, J.R.; Brown, K.G.

2012-01-01

Chemical equilibrium modeling of cementitious materials requires aqueous–solid equilibrium constants of the controlling mineral phases (K sp ) and the available concentrations of primary components. Inherent randomness of the input and model parameters, experimental measurement error, the assumptions and approximations required for numerical simulation, and inadequate knowledge of the chemical process contribute to uncertainty in model prediction. A numerical simulation framework is developed in this paper to assess uncertainty in K sp values used in geochemical speciation models. A Bayesian statistical method is used in combination with an efficient, adaptive Metropolis sampling technique to develop probability density functions for K sp values. One set of leaching experimental observations is used for calibration and another set is used for comparison to evaluate the applicability of the approach. The estimated probability distributions of K sp values can be used in Monte Carlo simulation to assess uncertainty in the behavior of aqueous–solid partitioning of constituents in cement-based materials.

Micronutrient metal speciation is controlled by competitive organic chelation in grassland soils

Energy Technology Data Exchange (ETDEWEB)

Boiteau, Rene M.; Shaw, Jared B.; Pasa Tolic, Ljiljana; Koppenaal, David W.; Jansson, Janet K.

2018-05-01

Many elements are scarcely soluble in aqueous conditions found in high pH environments, such as calcareous grassland soils, unless complexed to strong binding organic ligands. To overcome this limitation, some plants and microbes produce chelators that solubilize micronutrient metals such as Fe, Ni, Cu, and Zn from mineral phases. These complexes are taken up by organisms via specific membrane receptors, thereby differentially impacting the bioavailability of these metals to the plant and microbial community. Although the importance of these chelation strategies for individual organisms has been well established, little is known about which pathways coexist within rhizosphere microbiomes or how they interact and compete for metal binding. Identifying these metallo-organic species within natural ecosystems has remained a formidable analytical challenge due to the vast diversity of compounds and poorly defined metabolic processes in complex soil matrix. Herein, we employed recently developed liquid chromatography (LC) mass spectrometry (MS) methods to characterize the speciation of water-soluble dissolved trace elements (Fe, Ni, Cu, and Zn) from Kansas Prairie soil. Both plant and fungal chelators were identified, revealing compound-specific patterns of chelation to biologically essential metals. Numerous metabolites typically implicated in plant iron acquisition and homeostasis, including mugineic acids, deoxymugineic acid, nicotianamine, and hydroxynicotianamine, dominated the speciation of divalent metals such as Ni, Cu, and Zn (2-57 pmol / g soil). In contrast, the fungal siderophore ferricrocine bound comparatively more trivalent Fe (9pmol / g soil). These results define biochemical pathways that underpin the regulation of metals in the grassland rhizosphere. They also raise new questions about the competition of these compounds for metal binding and their bioavailability to different members of the rhizosphere population. Even small structural differences

Simultaneous speciation neutron activation analysis for trace elements

International Nuclear Information System (INIS)

Chatt, A.; Kiceniuk, J.W.; Menendez Sanchez, W.; Bottaro, C.

2006-01-01

Among the various forms of neutron activation technique being developed in our laboratory, much emphasis has been placed over the last ten years or so on the development of simultaneous speciation neutron activation analysis (SSNAA). This technique can now be used for the simultaneous determination of various species of a number of elements. Almost all speciation techniques consist of two steps. The first step involves the separation of species from the sample followed by the second step of element-specific detection. A number of characteristic features of NAA, which other techniques normally do not possess, can be advantageously exploited in SSNAA. For example, SSNAA can be used for: (i) multielement speciation with high specificity, (ii) speciation of chemically dissimilar elements such as Cd, Mn and Se, (iii) speciation of elements such as Cl, Br and I which are rather difficult to determine by most other techniques, etc. We have developed SSNAA methods for assaying various arsenic species, namely As(III), As(V), dimethyl arsonic acid (DMA), monomethylarsinic acid (MMA), arsenobetaine (AsB), organically bound arsenic (OBAs), and lipid-soluble arsenic (LSAs) in marine fish samples. We have extended these methods to include simultaneous determination of various species of As, Sb and Se in water. We have also developed SSNAA methods employing biochemical techniques for the simultaneous separation, preconcentration and characterization of metalloproteins and protein-bound trace element species of As, Br, Cd, Cu, Mn, Se, and Zn. We have developed methods for the simultaneous separation and characterization of organohalogen compounds in fish. An overview of the SSNAA methods being developed in our laboratory will be presented. (author)

Dynamic speciation analysis and bioavailability of metals in aquatic systems

NARCIS (Netherlands)

Leeuwen, van H.P.; Town, R.M.; Buffle, J.; Cleven, R.F.M.J.; Davison, W.; Puy, J.; Riemsdijk, van W.H.; Sigg, L.

2005-01-01

Dynamic metal speciation analysis in aquatic ecosystems is emerging as a powerful basis for development of predictions of bioavailability and reliable risk assessment strategies. A given speciation sensor is characterized by an effective time scale or kinetic window that defines the measurable metal

Numerical computation of MHD equilibria

International Nuclear Information System (INIS)

Atanasiu, C.V.

1982-10-01

A numerical code for a two-dimensional MHD equilibrium computation has been carried out. The code solves the Grad-Shafranov equation in its integral form, for both formulations: the free-boundary problem and the fixed boundary one. Examples of the application of the code to tokamak design are given. (author)

Pollinator-driven ecological speciation in plants: new evidence and future perspectives.

Science.gov (United States)

Van der Niet, Timotheüs; Peakall, Rod; Johnson, Steven D

2014-01-01

The hypothesis that pollinators have been important drivers of angiosperm diversity dates back to Darwin, and remains an important research topic today. Mounting evidence indicates that pollinators have the potential to drive diversification at several different stages of the evolutionary process. Microevolutionary studies have provided evidence for pollinator-mediated floral adaptation, while macroevolutionary evidence supports a general pattern of pollinator-driven diversification of angiosperms. However, the overarching issue of whether, and how, shifts in pollination system drive plant speciation represents a critical gap in knowledge. Bridging this gap is crucial to fully understand whether pollinator-driven microevolution accounts for the observed macroevolutionary patterns. Testable predictions about pollinator-driven speciation can be derived from the theory of ecological speciation, according to which adaptation (microevolution) and speciation (macroevolution) are directly linked. This theory is a particularly suitable framework for evaluating evidence for the processes underlying shifts in pollination systems and their potential consequences for the evolution of reproductive isolation and speciation. This Viewpoint paper focuses on evidence for the four components of ecological speciation in the context of plant-pollinator interactions, namely (1) the role of pollinators as selective agents, (2) floral trait divergence, including the evolution of 'pollination ecotypes', (3) the geographical context of selection on floral traits, and (4) the role of pollinators in the evolution of reproductive isolation. This Viewpoint also serves as the introduction to a Special Issue on Pollinator-Driven Speciation in Plants. The 13 papers in this Special Issue range from microevolutionary studies of ecotypes to macroevolutionary studies of historical ecological shifts, and span a wide range of geographical areas and plant families. These studies further illustrate

Pollinator-driven ecological speciation in plants: new evidence and future perspectives

Science.gov (United States)

Van der Niet, Timotheüs; Peakall, Rod; Johnson, Steven D.

2014-01-01

Background The hypothesis that pollinators have been important drivers of angiosperm diversity dates back to Darwin, and remains an important research topic today. Mounting evidence indicates that pollinators have the potential to drive diversification at several different stages of the evolutionary process. Microevolutionary studies have provided evidence for pollinator-mediated floral adaptation, while macroevolutionary evidence supports a general pattern of pollinator-driven diversification of angiosperms. However, the overarching issue of whether, and how, shifts in pollination system drive plant speciation represents a critical gap in knowledge. Bridging this gap is crucial to fully understand whether pollinator-driven microevolution accounts for the observed macroevolutionary patterns. Testable predictions about pollinator-driven speciation can be derived from the theory of ecological speciation, according to which adaptation (microevolution) and speciation (macroevolution) are directly linked. This theory is a particularly suitable framework for evaluating evidence for the processes underlying shifts in pollination systems and their potential consequences for the evolution of reproductive isolation and speciation. Scope This Viewpoint paper focuses on evidence for the four components of ecological speciation in the context of plant-pollinator interactions, namely (1) the role of pollinators as selective agents, (2) floral trait divergence, including the evolution of ‘pollination ecotypes‘, (3) the geographical context of selection on floral traits, and (4) the role of pollinators in the evolution of reproductive isolation. This Viewpoint also serves as the introduction to a Special Issue on Pollinator-Driven Speciation in Plants. The 13 papers in this Special Issue range from microevolutionary studies of ecotypes to macroevolutionary studies of historical ecological shifts, and span a wide range of geographical areas and plant families. These studies

Diagonal Eigenvalue Unity (DEU) code for spectral amplitude coding-optical code division multiple access

Science.gov (United States)

Ahmed, Hassan Yousif; Nisar, K. S.

2013-08-01

Code with ideal in-phase cross correlation (CC) and practical code length to support high number of users are required in spectral amplitude coding-optical code division multiple access (SAC-OCDMA) systems. SAC systems are getting more attractive in the field of OCDMA because of its ability to eliminate the influence of multiple access interference (MAI) and also suppress the effect of phase induced intensity noise (PIIN). In this paper, we have proposed new Diagonal Eigenvalue Unity (DEU) code families with ideal in-phase CC based on Jordan block matrix with simple algebraic ways. Four sets of DEU code families based on the code weight W and number of users N for the combination (even, even), (even, odd), (odd, odd) and (odd, even) are constructed. This combination gives DEU code more flexibility in selection of code weight and number of users. These features made this code a compelling candidate for future optical communication systems. Numerical results show that the proposed DEU system outperforms reported codes. In addition, simulation results taken from a commercial optical systems simulator, Virtual Photonic Instrument (VPI™) shown that, using point to multipoint transmission in passive optical network (PON), DEU has better performance and could support long span with high data rate.

Speciation and Localization of Arsenic in White and Brown Rice Grains

Energy Technology Data Exchange (ETDEWEB)

Meharg, Andrew A.; Lombi, Enzo; Williams, Paul N.; Scheckel, Kirk G.; Feldmann, Joerg; Raab, Andrea; Zhu, Yongguan; Islam, Rafiql (EPA); (Bangladesh); (UCopenhagen); (Aberdeen); (Chinese Aca. Sci.)

2008-06-30

Synchrotron-based X-ray fluorescence (S-XRF) was utilized to locate arsenic (As) in polished (white) and unpolished (brown) rice grains from the United States, China, and Bangladesh. In white rice As was generally dispersed throughout the grain, the bulk of which constitutes the endosperm. In brown rice As was found to be preferentially localized at the surface, in the region corresponding to the pericarp and aleurone layer. Copper, iron, manganese, and zinc localization followed that of arsenic in brown rice, while the location for cadmium and nickel was distinctly different, showing relatively even distribution throughout the endosperm. The localization of As in the outer grain of brown rice was confirmed by laser ablation ICP?MS. Arsenic speciation of all grains using spatially resolved X-ray absorption near edge structure (?-XANES) and bulk extraction followed by anion exchange HPLC?ICP?MS revealed the presence of mainly inorganic As and dimethylarsinic acid (DMA). However, the two techniques indicated different proportions of inorganic:organic As species. A wider survey of whole grain speciation of white (n = 39) and brown (n = 45) rice samples from numerous sources (field collected, supermarket survey, and pot trials) showed that brown rice had a higher proportion of inorganic arsenic present than white rice. Furthermore, the percentage of DMA present in the grain increased along with total grain arsenic.

Genomics of Rapid Incipient Speciation in Sympatric Threespine Stickleback.

Directory of Open Access Journals (Sweden)

David A Marques

2016-02-01

Full Text Available Ecological speciation is the process by which reproductively isolated populations emerge as a consequence of divergent natural or ecologically-mediated sexual selection. Most genomic studies of ecological speciation have investigated allopatric populations, making it difficult to infer reproductive isolation. The few studies on sympatric ecotypes have focused on advanced stages of the speciation process after thousands of generations of divergence. As a consequence, we still do not know what genomic signatures of the early onset of ecological speciation look like. Here, we examined genomic differentiation among migratory lake and resident stream ecotypes of threespine stickleback reproducing in sympatry in one stream, and in parapatry in another stream. Importantly, these ecotypes started diverging less than 150 years ago. We obtained 34,756 SNPs with restriction-site associated DNA sequencing and identified genomic islands of differentiation using a Hidden Markov Model approach. Consistent with incipient ecological speciation, we found significant genomic differentiation between ecotypes both in sympatry and parapatry. Of 19 islands of differentiation resisting gene flow in sympatry, all were also differentiated in parapatry and were thus likely driven by divergent selection among habitats. These islands clustered in quantitative trait loci controlling divergent traits among the ecotypes, many of them concentrated in one region with low to intermediate recombination. Our findings suggest that adaptive genomic differentiation at many genetic loci can arise and persist in sympatry at the very early stage of ecotype divergence, and that the genomic architecture of adaptation may facilitate this.

LFSC - Linac Feedback Simulation Code

Energy Technology Data Exchange (ETDEWEB)

Ivanov, Valentin; /Fermilab

2008-05-01

The computer program LFSC (Code>) is a numerical tool for simulation beam based feedback in high performance linacs. The code LFSC is based on the earlier version developed by a collective of authors at SLAC (L.Hendrickson, R. McEwen, T. Himel, H. Shoaee, S. Shah, P. Emma, P. Schultz) during 1990-2005. That code was successively used in simulation of SLC, TESLA, CLIC and NLC projects. It can simulate as pulse-to-pulse feedback on timescale corresponding to 5-100 Hz, as slower feedbacks, operating in the 0.1-1 Hz range in the Main Linac and Beam Delivery System. The code LFSC is running under Matlab for MS Windows operating system. It contains about 30,000 lines of source code in more than 260 subroutines. The code uses the LIAR ('Linear Accelerator Research code') for particle tracking under ground motion and technical noise perturbations. It uses the Guinea Pig code to simulate the luminosity performance. A set of input files includes the lattice description (XSIF format), and plane text files with numerical parameters, wake fields, ground motion data etc. The Matlab environment provides a flexible system for graphical output.

Numerical semigroups and applications

CERN Document Server

Assi, Abdallah

2016-01-01

This work presents applications of numerical semigroups in Algebraic Geometry, Number Theory, and Coding Theory. Background on numerical semigroups is presented in the first two chapters, which introduce basic notation and fundamental concepts and irreducible numerical semigroups. The focus is in particular on free semigroups, which are irreducible; semigroups associated with planar curves are of this kind. The authors also introduce semigroups associated with irreducible meromorphic series, and show how these are used in order to present the properties of planar curves. Invariants of non-unique factorizations for numerical semigroups are also studied. These invariants are computationally accessible in this setting, and thus this monograph can be used as an introduction to Factorization Theory. Since factorizations and divisibility are strongly connected, the authors show some applications to AG Codes in the final section. The book will be of value for undergraduate students (especially those at a higher leve...

Unusual conservation of mitochondrial gene order in Crassostrea oysters: evidence for recent speciation in Asia

Science.gov (United States)

2010-01-01

Background Oysters are morphologically plastic and hence difficult subjects for taxonomic and evolutionary studies. It is long been suspected, based on the extraordinary species diversity observed, that Asia Pacific is the epicenter of oyster speciation. To understand the species diversity and its evolutionary history, we collected five Crassostrea species from Asia and sequenced their complete mitochondrial (mt) genomes in addition to two newly released Asian oysters (C. iredalei and Saccostrea mordax) for a comprehensive analysis. Results The six Asian Crassostrea mt genomes ranged from 18,226 to 22,446 bp in size, and all coded for 39 genes (12 proteins, 2 rRNAs and 25 tRNAs) on the same strand. Their genomes contained a split of the rrnL gene and duplication of trnM, trnK and trnQ genes. They shared the same gene order that differed from an Atlantic sister species by as many as nine tRNA changes (6 transpositions and 3 duplications) and even differed significantly from S. mordax in protein-coding genes. Phylogenetic analysis indicates that the six Asian Crassostrea species emerged between 3 and 43 Myr ago, while the Atlantic species evolved 83 Myr ago. Conclusions The complete conservation of gene order in the six Asian Crassostrea species over 43 Myr is highly unusual given the remarkable rate of rearrangements in their sister species and other bivalves. It provides strong evidence for the recent speciation of the six Crassostrea species in Asia. It further indicates that changes in mt gene order may not be strictly a function of time but subject to other constraints that are presently not well understood. PMID:21189147

Aspects of speciation in foodstuffs

International Nuclear Information System (INIS)

Crews, Helen M.

2001-01-01

Food is the primary source of trace elements for humans and it is now generally accepted that the bioavailability of a given element and its behaviour in the body depends upon its chemical form. This point was illustrated with the example of arsenic speciation in fish in which bioaccumulation takes place in the marine food chain, however, the species of arsenic ingested by man when the fish is consumed are not toxic. It was pointed out that species information will be vital in deciding upon realistic average dietary requirements for trace elements, particularly because both deficiency or excess of an element can have detrimental consequences on an individual's health. Two examples of speciation studies with food (Cd and Se) were presented and the importance of the use of label technology which will allow studies of target analytes at physiological levels, was stressed

Speciation of arsenic and mercury in feed: why and how?

DEFF Research Database (Denmark)

Hedegaard, Rikke Susanne Vingborg; Sloth, Jens Jørgen

2011-01-01

The understanding of the mechanisms of biological activities and biotransformation of trace elements such as arsenic and mercury has improved during recent years with the help of chemical speciation studies. However, the most important practical application of elemental speciation is in the area ...... in feed as well as initiatives for the establishment of standardized methods for determination of inorganic arsenic and methylmercury are presented.......The understanding of the mechanisms of biological activities and biotransformation of trace elements such as arsenic and mercury has improved during recent years with the help of chemical speciation studies. However, the most important practical application of elemental speciation is in the area...... of toxicology. Toxicological knowledge on the individual trace element species can lead to more specific legislation of hazardous substances found in feed. Examples here are arsenic, where the inorganic forms are the most toxic, and mercury, where the organic form methylmercury is more toxic than inorganic...

The importance of element speciation in water analysis - a plea for further investigations

International Nuclear Information System (INIS)

Frimmel, F.H.; Gremm, T.

1994-01-01

Water analysis is dominated by parameters given in laws and recommendations concerning water quality. Speciation has been broadly neglected. This might be due to the difficulties in defining speciation and in determining species at low concentrations. This paper addresses the physical, chemical and biological approaches to speciation and gives examples for methods which are suited for species determination in aquatic systems. Metals and non-metallic elements are covered as well. It is obvious that speciation is a key for understanding the function of aquatic ecosystems and their technical utilization. (orig.)

Control rod computer code IAMCOS: general theory and numerical methods

International Nuclear Information System (INIS)

West, G.

1982-11-01

IAMCOS is a computer code for the description of mechanical and thermal behavior of cylindrical control rods for fast breeders. This code version was applied, tested and modified from 1979 to 1981. In this report are described the basic model (02 version), theoretical definitions and computation methods [fr

How humans drive speciation as well as extinction

DEFF Research Database (Denmark)

Bull, Joseph William; Maron, M.

2016-01-01

influence upon divergence in microorganisms. Even if human activities resulted in no net loss of species diversity by balancing speciation and extinction rates, this would probably be deemed unacceptable. We discuss why, based upon ‘no net loss’ conservation literature— considering phylogenetic diversity...... and other metrics, risk aversion, taboo trade-offs and spatial heterogeneity. We conclude that evaluating speciation alongside extinction could result in more nuanced understanding of biosphere trends, clarifying what it is we actually value about biodiversity....

The shape and temporal dynamics of phylogenetic trees arising from geographic speciation.

Science.gov (United States)

Pigot, Alex L; Phillimore, Albert B; Owens, Ian P F; Orme, C David L

2010-12-01

Phylogenetic trees often depart from the expectations of stochastic models, exhibiting imbalance in diversification among lineages and slowdowns in the rate of lineage accumulation through time. Such departures have led to a widespread perception that ecological differences among species or adaptation and subsequent niche filling are required to explain patterns of diversification. However, a key element missing from models of diversification is the geographical context of speciation and extinction. In this study, we develop a spatially explicit model of geographic range evolution and cladogenesis, where speciation arises via vicariance or peripatry, and explore the effects of these processes on patterns of diversification. We compare the results with those observed in 41 reconstructed avian trees. Our model shows that nonconstant rates of speciation and extinction are emergent properties of the apportioning of geographic ranges that accompanies speciation. The dynamics of diversification exhibit wide variation, depending on the mode of speciation, tendency for range expansion, and rate of range evolution. By varying these parameters, the model is able to capture many, but not all, of the features exhibited by birth-death trees and extant bird clades. Under scenarios with relatively stable geographic ranges, strong slowdowns in diversification rates are produced, with faster rates of range dynamics leading to constant or accelerating rates of apparent diversification. A peripatric model of speciation with stable ranges also generates highly unbalanced trees typical of bird phylogenies but fails to produce realistic range size distributions among the extant species. Results most similar to those of a birth-death process are reached under a peripatric speciation scenario with highly volatile range dynamics. Taken together, our results demonstrate that considering the geographical context of speciation and extinction provides a more conservative null model of

Dearborn GC-MS organic speciation data

Data.gov (United States)

U.S. Environmental Protection Agency — Ambient particulate matter organic speciation data from July - August, 2011. This dataset is associated with the following publication: Lynam, M., T. Dvonch, J....

Estimation of Speciation and Distribution of {sup 131}I in urban and natural Environments

Energy Technology Data Exchange (ETDEWEB)

Hormann, Volker; Fischer, Helmut W. [University of Bremen, Institute of Environmental Physics, Otto-Hahn-Allee 1, 28359 Bremen (Germany)

2014-07-01

{sup 131}I is a radionuclide that may be introduced into natural and urban environments via several pathways. As a result of nuclear accidents it may be washed out from air or settle onto the ground by dry deposition. In urban landscapes this is again washed out by rain, partly introduced into the sewer system and thus transported to the next wastewater plant where it may accumulate in certain compartments. In rural landscapes it may penetrate the soil and be more or less available to plant uptake depending on chemical and physical conditions. On a regular basis, {sup 131}I is released into the urban sewer system in the course of therapeutic and diagnostic treatment of patients with thyroid diseases. The speciation of iodine in the environment is complex. Depending on redox state and biological activity, it may appear as I{sup -}, IO{sub 3}{sup -}, I{sub 2} or bound to organic molecules (e.g. humic acids). Moreover, some of these species are bound to surfaces of particles suspended in water or present in soil, e.g. hydrous ferric oxides (HFO). It is to be expected that speciation and solid-liquid distribution of iodine strongly depends on environmental conditions. In this study, the speciation and solid-liquid distribution of iodine in environmental samples such as waste water, sewage sludge and soil are estimated with the help of the geochemical code PHREEQC. The calculations are carried out using chemical equilibrium and sorption data from the literature and chemical analyses of the media. We present the results of these calculations and compare them with experimental results of medical {sup 131}I in waste water and sewage sludge. The output of this study will be used in future work where transport and distribution of iodine in wastewater treatment plants and in irrigated agricultural soils will be modeled. (authors)

Reactor lattice codes

International Nuclear Information System (INIS)

Kulikowska, T.

1999-01-01

The present lecture has a main goal to show how the transport lattice calculations are realised in a standard computer code. This is illustrated on the example of the WIMSD code, belonging to the most popular tools for reactor calculations. Most of the approaches discussed here can be easily modified to any other lattice code. The description of the code assumes the basic knowledge of reactor lattice, on the level given in the lecture on 'Reactor lattice transport calculations'. For more advanced explanation of the WIMSD code the reader is directed to the detailed descriptions of the code cited in References. The discussion of the methods and models included in the code is followed by the generally used homogenisation procedure and several numerical examples of discrepancies in calculated multiplication factors based on different sources of library data. (author)

LFSC - Linac Feedback Simulation Code

International Nuclear Information System (INIS)

Ivanov, Valentin; Fermilab

2008-01-01

The computer program LFSC ( ) is a numerical tool for simulation beam based feedback in high performance linacs. The code LFSC is based on the earlier version developed by a collective of authors at SLAC (L.Hendrickson, R. McEwen, T. Himel, H. Shoaee, S. Shah, P. Emma, P. Schultz) during 1990-2005. That code was successively used in simulation of SLC, TESLA, CLIC and NLC projects. It can simulate as pulse-to-pulse feedback on timescale corresponding to 5-100 Hz, as slower feedbacks, operating in the 0.1-1 Hz range in the Main Linac and Beam Delivery System. The code LFSC is running under Matlab for MS Windows operating system. It contains about 30,000 lines of source code in more than 260 subroutines. The code uses the LIAR ('Linear Accelerator Research code') for particle tracking under ground motion and technical noise perturbations. It uses the Guinea Pig code to simulate the luminosity performance. A set of input files includes the lattice description (XSIF format), and plane text files with numerical parameters, wake fields, ground motion data etc. The Matlab environment provides a flexible system for graphical output

Influence of natural organic matter on the speciation of radionuclides in a geochemistry context; Influence de la matiere organique naturelle sur la speciation des radionucleides en contexte geochimique

Energy Technology Data Exchange (ETDEWEB)

Marang, L

2007-09-15

The principal aim of this work is the study of the influence of natural organic matter, in particularly humic substances (HS), on the speciation of radionuclides (RN). The studied radionuclides are cobalt (II), europium (III) and uranium (VI). It has been shown that mobility and bioavailability of a metal are related to its speciation. The NICA-Donnan model describes metal ion binding to NOM: it accounts for NOM chemical heterogeneity, competition during binding and ionic strength effects. However the model has been calibrated with a limited number of experimental data for the RN. Indeed there is only a few speciation technique available for the study of the interactions RN-HS. Within the framework of this study, we have developed and optimised speciation technique (Flux Donnan Membrane Technique and the use of an un-solubilized humic acid) in order to acquire new experimental data, we have also studied the effect of the competition on RN speciation and finally we have tested the model capacity to predict the RN behavior in laboratory or in situ. (author)

Speciation and solubility of neptunium in underground environments by paper electrophoresis

International Nuclear Information System (INIS)

Nagasaki, S.; Tanaka, Satoru; Takahashi, Yoichi

1988-01-01

Speciation and solubility of neptunium were studied using paper electrophoresis, ion exchange and ultrafiltration. Among these methods, the paper electrophoresis was found to be suitable for measuring speciation and solubility of neptunium of low concentration, if chemical species had opposite charge to each other or dissolved species had a charge. Using paper electrophoresis, hydrolysis constants of NpO 2 OH 0 and NpO 2 - (OH) 2 - and solubility product of NpO 2 were obtained and ionic-strength dependence of speciation was observed. (author) 9 refs.; 3 figs.; 2 tabs

Pb speciation results in amended soils

Data.gov (United States)

U.S. Environmental Protection Agency — The dataset shows the distribution of Pb phases resulting from various amendments to change Pb speciation. This dataset is associated with the following publication:...

Neutral Models with Generalised Speciation

NARCIS (Netherlands)

Haegeman, Bart; Etienne, Rampal S.

Hubbell's neutral theory claims that ecological patterns such as species abundance distributions can be explained by a stochastic model based on simple assumptions. One of these assumptions, the point mutation assumption, states that every individual has the same probability to speciate. Etienne et

Assessing numerical methods used in nuclear aerosol transport models

International Nuclear Information System (INIS)

McDonald, B.H.

1987-01-01

Several computer codes are in use for predicting the behaviour of nuclear aerosols released into containment during postulated accidents in water-cooled reactors. Each of these codes uses numerical methods to discretize and integrate the equations that govern the aerosol transport process. Computers perform only algebraic operations and generate only numbers. It is in the numerical methods that sense can be made of these numbers and where they can be related to the actual solution of the equations. In this report, the numerical methods most commonly used in the aerosol transport codes are examined as special cases of a general solution procedure, the Method of Weighted Residuals. It would appear that the numerical methods used in the codes are all capable of producing reasonable answers to the mathematical problem when used with skill and care. 27 refs

Potential of the MCNP computer code

International Nuclear Information System (INIS)

Kyncl, J.

1995-01-01

The MCNP code is designed for numerical solution of neutron, photon, and electron transport problems by the Monte Carlo method. The code is based on the linear transport theory of behavior of the differential flux of the particles. The code directly uses data from the cross section point data library for input. Experience is outlined, gained in the application of the code to the calculation of the effective parameters of fuel assemblies and of the entire reactor core, to the determination of the effective parameters of the elementary fuel cell, and to the numerical solution of neutron diffusion and/or transport problems of the fuel assembly. The agreement between the calculated and observed data gives evidence that the MCNP code can be used with advantage for calculations involving WWER type fuel assemblies. (J.B.). 4 figs., 6 refs

ISSEBETS 2009. 7. International Symposium on Speciation of Elements in Biological, Environmental and Toxicological Sciences

International Nuclear Information System (INIS)

2009-01-01

The 7th ISSEBETS was held in August 2009 in city of Eger, Hungary. The main topics were: speciation of essential and toxic elements in food, in traditional drugs, designing functional foods through applied speciation, metallomics and metalloproteomics, metal species in health and disease, cycling of elemental species in the environment, speciation related regulations and legislation, metal environmental, bioremediation, quality assurance of speciation analysis. (S.I.)

COLLAGE 2: a numerical code for radionuclide migration through a fractured geosphere in aqueous and colloidal phases

International Nuclear Information System (INIS)

Grindrod, P.; Cooper, N.

1993-05-01

In previous work, the COLLAGE code was developed to model the impacts of mobile and immobile colloidal material upon the dispersal and migration of a radionuclide species within a saturated planer fracture surrounded by porous media. The adsorption of radionuclides to colloid surfaces was treated as instantaneous and reversible. In this report we present a new version of the code, COLLAGE 2. Here the adsorption of radionuclides to the colloidal material is treated via first order kinetics. The flow and geometry of the fracture remain as in the previous model. The major effect of colloids upon the radionuclide species is to adsorb them within the fracture space and thus exclude them from the surrounding porous medium. Thus the matrix diffusion process, a strongly retarding effect, is exchanged for a colloid capture/release process by which adsorbed nuclides are also retarded. The effects of having a colloid-radionuclide kinetic interaction include the phenomena of double pulse breakthrough (the pseudo colloid population followed by the solute plume) in cases where the desorption process is slow and the pseudo colloids are highly mobile. Some example calculations are given and some verification examples are discussed. Finally a complete listing of the code is presented as an appendix, including the subroutines allowing for the numerical inversion of the Laplace transformed solution via Talbot's method. 6 figs

COLLAGE 2: a numerical code for radionuclide migration through a fractured geosphere in aqueous and colloidal phases

Energy Technology Data Exchange (ETDEWEB)

Grindrod, P.; Cooper, N. [Intera Information Technologies Ltd., Henley-on-Thames (United Kingdom)

1993-05-01

In previous work, the COLLAGE code was developed to model the impacts of mobile and immobile colloidal material upon the dispersal and migration of a radionuclide species within a saturated planer fracture surrounded by porous media. The adsorption of radionuclides to colloid surfaces was treated as instantaneous and reversible. In this report we present a new version of the code, COLLAGE 2. Here the adsorption of radionuclides to the colloidal material is treated via first order kinetics. The flow and geometry of the fracture remain as in the previous model. The major effect of colloids upon the radionuclide species is to adsorb them within the fracture space and thus exclude them from the surrounding porous medium. Thus the matrix diffusion process, a strongly retarding effect, is exchanged for a colloid capture/release process by which adsorbed nuclides are also retarded. The effects of having a colloid-radionuclide kinetic interaction include the phenomena of double pulse breakthrough (the pseudo colloid population followed by the solute plume) in cases where the desorption process is slow and the pseudo colloids are highly mobile. Some example calculations are given and some verification examples are discussed. Finally a complete listing of the code is presented as an appendix, including the subroutines allowing for the numerical inversion of the Laplace transformed solution via Talbot`s method. 6 figs.

Estimating PM2.5 speciation concentrations using prototype 4.4 km-resolution MISR aerosol properties over Southern California

Science.gov (United States)

Meng, Xia; Garay, Michael J.; Diner, David J.; Kalashnikova, Olga V.; Xu, Jin; Liu, Yang

2018-05-01

Research efforts to better characterize the differential toxicity of PM2.5 (particles with aerodynamic diameters less than or equal to 2.5 μm) speciation are often hindered by the sparse or non-existent coverage of ground monitors. The Multi-angle Imaging SpectroRadiometer (MISR) aboard NASA's Terra satellite is one of few satellite aerosol sensors providing information of aerosol shape, size and extinction globally for a long and continuous period that can be used to estimate PM2.5 speciation concentrations since year 2000. Currently, MISR only provides a 17.6 km product for its entire mission with global coverage every 9 days, a bit too coarse for air pollution health effects research and to capture local spatial variability of PM2.5 speciation. In this study, generalized additive models (GAMs) were developed using MISR prototype 4.4 km-resolution aerosol data with meteorological variables and geographical indicators, to predict ground-level concentrations of PM2.5 sulfate, nitrate, organic carbon (OC) and elemental carbon (EC) in Southern California between 2001 and 2015 at the daily level. The GAMs are able to explain 66%, 62%, 55% and 58% of the daily variability in PM2.5 sulfate, nitrate, OC and EC concentrations during the whole study period, respectively. Predicted concentrations capture large regional patterns as well as fine gradients of the four PM2.5 species in urban areas of Los Angeles and other counties, as well as in the Central Valley. This study is the first attempt to use MISR prototype 4.4 km-resolution AOD (aerosol optical depth) components data to predict PM2.5 sulfate, nitrate, OC and EC concentrations at the sub-regional scale. In spite of its low temporal sampling frequency, our analysis suggests that the MISR 4.4 km fractional AODs provide a promising way to capture the spatial hotspots and long-term temporal trends of PM2.5 speciation, understand the effectiveness of air quality controls, and allow our estimated PM2.5 speciation data to

Electrochemical metal speciation in natural and model polyelectrolyte systems

OpenAIRE

Hoop, van den, M.A.G.T.

1994-01-01

The purpose of the research described in this thesis was to examine the applicability of electro-analytical techniques in obtaining information on the speciation of metals, i.e. their distribution over different physico-chemical forms, in aquatic systems containing charged macromolecules. In chapter 1 a general introduction is given to (i) metal speciation in aquatic systems, (ii) (bio)polyelectrolytes and their counterion distributions and (iii) electrochemical ...

Quasi-optical converters for high-power gyrotrons: a brief review of physical models, numerical methods and computer codes

International Nuclear Information System (INIS)

Sabchevski, S; Zhelyazkov, I; Benova, E; Atanassov, V; Dankov, P; Thumm, M; Arnold, A; Jin, J; Rzesnicki, T

2006-01-01

Quasi-optical (QO) mode converters are used to transform electromagnetic waves of complex structure and polarization generated in gyrotron cavities into a linearly polarized, Gaussian-like beam suitable for transmission. The efficiency of this conversion as well as the maintenance of low level of diffraction losses are crucial for the implementation of powerful gyrotrons as radiation sources for electron-cyclotron-resonance heating of fusion plasmas. The use of adequate physical models, efficient numerical schemes and up-to-date computer codes may provide the high accuracy necessary for the design and analysis of these devices. In this review, we briefly sketch the most commonly used QO converters, the mathematical base they have been treated on and the basic features of the numerical schemes used. Further on, we discuss the applicability of several commercially available and free software packages, their advantages and drawbacks, for solving QO related problems

An axisymmetric gravitational collapse code

Energy Technology Data Exchange (ETDEWEB)

Choptuik, Matthew W [CIAR Cosmology and Gravity Program, Department of Physics and Astronomy, University of British Columbia, Vancouver BC, V6T 1Z1 (Canada); Hirschmann, Eric W [Department of Physics and Astronomy, Brigham Young University, Provo, UT 84604 (United States); Liebling, Steven L [Southampton College, Long Island University, Southampton, NY 11968 (United States); Pretorius, Frans [Theoretical Astrophysics, California Institute of Technology, Pasadena, CA 91125 (United States)

2003-05-07

We present a new numerical code designed to solve the Einstein field equations for axisymmetric spacetimes. The long-term goal of this project is to construct a code that will be capable of studying many problems of interest in axisymmetry, including gravitational collapse, critical phenomena, investigations of cosmic censorship and head-on black-hole collisions. Our objective here is to detail the (2+1)+1 formalism we use to arrive at the corresponding system of equations and the numerical methods we use to solve them. We are able to obtain stable evolution, despite the singular nature of the coordinate system on the axis, by enforcing appropriate regularity conditions on all variables and by adding numerical dissipation to hyperbolic equations.

An axisymmetric gravitational collapse code

International Nuclear Information System (INIS)

Choptuik, Matthew W; Hirschmann, Eric W; Liebling, Steven L; Pretorius, Frans

2003-01-01

We present a new numerical code designed to solve the Einstein field equations for axisymmetric spacetimes. The long-term goal of this project is to construct a code that will be capable of studying many problems of interest in axisymmetry, including gravitational collapse, critical phenomena, investigations of cosmic censorship and head-on black-hole collisions. Our objective here is to detail the (2+1)+1 formalism we use to arrive at the corresponding system of equations and the numerical methods we use to solve them. We are able to obtain stable evolution, despite the singular nature of the coordinate system on the axis, by enforcing appropriate regularity conditions on all variables and by adding numerical dissipation to hyperbolic equations

Interaction between Digestive Strategy and Niche Specialization Predicts Speciation Rates across Herbivorous Mammals.

Science.gov (United States)

Tran, Lucy A P

2016-04-01

Biotic and abiotic factors often are treated as mutually exclusive drivers of diversification processes. In this framework, ecological specialists are expected to have higher speciation rates than generalists if abiotic factors are the primary controls on species diversity but lower rates if biotic interactions are more important. Speciation rate is therefore predicted to positively correlate with ecological specialization in the purely abiotic model but negatively correlate in the biotic model. In this study, I show that the positive relationship between ecological specialization and speciation expected from the purely abiotic model is recovered only when a species-specific trait, digestive strategy, is modeled in the terrestrial, herbivorous mammals (Mammalia). This result suggests a more nuanced model in which the response of specialized lineages to abiotic factors is dependent on a biological trait. I also demonstrate that the effect of digestive strategy on the ecological specialization-speciation rate relationship is not due to a difference in either the degree of ecological specialization or the speciation rate between foregut- and hindgut-fermenting mammals. Together, these findings suggest that a biological trait, alongside historical abiotic events, played an important role in shaping mammal speciation at long temporal and large geographic scales.

Carbon Speciation and Anthropogenic Influences in Haitian Rivers and Inland Waters

Science.gov (United States)

Markowitz, M.; Paine, J.; McGillis, W. R.; Hsueh, D. Y.

2014-12-01

Climate, geography, and land use patterns all contribute to the social, economic, and environmental challenges in Haiti. Water quality remains a predominant issue, and the health of freshwater systems has been linked to the cycling and transformation of carbon. A speciation dominated by carbonates and bicarbonates is conducive to higher alkalinity waters, which is part of an environmental signature in which cholera and other bacteria thrive. Numerous human activities such as deforestation, biomass burning, and agricultural practices have radically changed the abundances of carbon on land and rivers in Haiti. In Haitian small mountainous rivers, carbon speciation is also influenced by the weathering of limestone and other carbonate rocks. Additionally, rain events and natural disturbances such as earthquakes have shown to drastically increase the amount of carbon in rivers and coastal waters. Since 2010, a network of both satellite and autonomous hydrometeorological stations has been deployed to monitor the climate in southwestern Haiti. Additionally, various hydrological parameters from river, reservoir, and coastal sites have been measured during field visits. Research will be continued into the wet season, providing temporal analysis needed for quantifying the abundances and transformations of carbon. Together, data from weather stations and field sites can be contextualized with local land use patterns and other human activities to offer unique insights on the carbon system. Findings may offer new perspectives on the relationships between hydrologic cycles, human health, and environmental sustainability in Haiti.

Mercury speciation with fluorescent gold nanocluster as a probe.

Science.gov (United States)

Yang, Jian-Yu; Yang, Ting; Wang, Xiao-Yan; Chen, Ming-Li; Yu, Yong-Liang; Wang, Jian-Hua

2018-05-11

Fluorescent nanoparticles are widely used for sensing biologically significant species. However, it is rarely reported for the discrimination or speciation of metal species. In this work, we report for the first time the speciation of mercury (Hg 2+ ) and methylmercury (CH 3 Hg + ) by taking advantage of the fluorescence feature of folic acid-capped gold nanoclusters (FA-AuNCs). FA-Au NCs exhibit an average size of 2.08±0.15 nm and a maximum emission at λ ex /λ em = 280/440 nm with a quantum yield of 27.3%. It is interesting that Hg 2+ causes a significant quench on the fluorescence of FA-Au NCs, whereas CH 3 Hg + leads to a remarkable fluorescence enhancement. Based on this discriminative fluorescent response between Hg 2+ and CH 3 Hg + , a novel nanosensor for the speciation of CH 3 Hg + and Hg 2+ was developed, providing limits of detection (LOD) of 28 nM for Hg 2+ and 25 nM for CH 3 Hg + within 100-1000 nM. This sensing system is highly selective to mercury. Its practical applications were further demonstrated by the analysis of CH 3 Hg + and the speciation of mercury (CH 3 Hg + and Hg 2+ ) in environmental water and fish samples.

Mitochondrial Recombination and Introgression during Speciation by Hybridization.

Science.gov (United States)

Leducq, Jean-Baptiste; Henault, Mathieu; Charron, Guillaume; Nielly-Thibault, Lou; Terrat, Yves; Fiumera, Heather L; Shapiro, B Jesse; Landry, Christian R

2017-08-01

Genome recombination is a major source of genotypic diversity and contributes to adaptation and speciation following interspecies hybridization. The contribution of recombination in these processes has been thought to be largely limited to the nuclear genome because organelles are mostly uniparentally inherited in animals and plants, which prevents recombination. Unicellular eukaryotes such as budding yeasts do, however, transmit mitochondria biparentally, suggesting that during hybridization, both parents could provide alleles that contribute to mitochondrial functions such as respiration and metabolism in hybrid populations or hybrid species. We examined the dynamics of mitochondrial genome transmission and evolution during speciation by hybridization in the natural budding yeast Saccharomyces paradoxus. Using population-scale mitochondrial genome sequencing in two endemic North American incipient species SpB and SpC and their hybrid species SpC*, we found that both parental species contributed to the hybrid mitochondrial genome through recombination. We support our findings by showing that mitochondrial recombination between parental types is frequent in experimental crosses that recreate the early step of this speciation event. In these artificial hybrids, we observed that mitochondrial genome recombination enhances phenotypic variation among diploid hybrids, suggesting that it could play a role in the phenotypic differentiation of hybrid species. Like the nuclear genome, the mitochondrial genome can, therefore, also play a role in hybrid speciation. © The Author 2017. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

The speciation of dissolved elements in aquatic solution. Radium and actinides

International Nuclear Information System (INIS)

Haesaenen, E.

1994-01-01

In the publication, the chemistry and speciation of radium, thorium, protactinium, uranium, neptunium, lutonium, americium and curium in ground-water environment is reviewed. Special attention is given to the transuranium elements, which have a central role in the repository of nuclear wastes. The most important methods used in the speciation of these elements is presented. The laser-induced methods, developed in the 1980's, are especially discussed. These have made it possible, e.g., to speciate the transuranium elements in their very low, actual repository ground-water concentrations (10-100 ng/l). (54 refs., 10 figs., 3 tabs.)

Progress report on SYVAC chemical speciation modelling studies during 1983/4

International Nuclear Information System (INIS)

Cross, J.; Smith, G.L.; Williams, D.R.

1984-01-01

This report summarises progress made on the SYVAC (System Variability Analysis program) chemical speciation project during 1983-4. Chemical speciation is defined and its importance in the SYVAC approach to Radioactive Waste Management is discussed. Computer modelling of chemical equilibria is described and the two programs presently operational at UWIST - SOLMNQ and MINEQL - are compared and discussed in detail. In view of the shortcomings of the databases supplied with these programs, a new database of equilibrium constants has been compiled containing 483 aqueous species and 329 solid phases, including data for the radionuclides uranium, plutonium, americium, neptunium and thorium. The collaborative work with AERE, Harwell, is reported. A leaching experiment carried out at Harwell has been modelled using the chemical speciation programs. The results for uranium, plutonium, americium and neptunium, are presented. However, the experimental data provided by AERE is insufficient for accurate simulations. Chemical speciation studies relating to specific sites require accurate characterisation of the groundwater, i.e. chemical composition, Eh and pH. In the absence of such information, preliminary studies have been made using an average granite groundwater. The results of these studies are presented and include solubility and speciation plots for uranium, plutonium, thorium and neptunium. The future aims of the project are discussed. (author)

CONCAWE effluent speciation project

Energy Technology Data Exchange (ETDEWEB)

Leonards, P.; Comber, M.; Forbes, S.; Whale, G.; Den Haan, K.

2010-09-15

In preparation for the implementation of the EU REACH regulation, a project was undertaken to transfer the high-resolution analytical method for determining hydrocarbon blocks in petroleum products by comprehensive two-dimensional gas chromatography (GCxGC) to a laboratory external to the petroleum industry (Institute for Environmental Studies (IVM) of the VU University of Amsterdam). The method was validated and used for the analysis of petroleum hydrocarbons extracted from refinery effluents. The report describes the technology transfer and the approaches used to demonstrate the successful transfer and application of the GCxGC methodology from analysing petroleum products to the quantitative determination of hydrocarbon blocks in refinery effluents. The report describes all the methods used for all the determinations on the effluent samples along with an overview of the results obtained which are presented in summary tables and graphs. These data have significantly improved CONCAWE's knowledge of what refineries emit in their effluents. A total of 111 Effluent Discharge Samples from 105 CONCAWE refineries in Europe were obtained in the period June 2008 to March 2009. These effluents were analysed for metals, standard effluent parameters (including COD, BOD), oil in water, BTEX and volatile organic compounds. The hydrocarbon speciation determinations and other hydrocarbon analyses are also reported. The individual refinery analytical results are included into this report, coded as per the CONCAWE system. These data will be, individually, communicated to companies and refineries. The report demonstrates that it is feasible to conduct a research programme to investigate the fate and effects of hydrocarbon blocks present in discharged refinery effluents.

Speciation of arsenic in biological samples.

Science.gov (United States)

Mandal, Badal Kumar; Ogra, Yasumitsu; Anzai, Kazunori; Suzuki, Kazuo T

2004-08-01

Speciation of arsenicals in biological samples is an essential tool to gain insight into its distribution in tissues and its species-specific toxicity to target organs. Biological samples (urine, hair, fingernail) examined in the present study were collected from 41 people of West Bengal, India, who were drinking arsenic (As)-contaminated water, whereas 25 blood and urine samples were collected from a population who stopped drinking As contaminated water 2 years before the blood collection. Speciation of arsenicals in urine, water-methanol extract of freeze-dried red blood cells (RBCs), trichloroacetic acid treated plasma, and water extract of hair and fingernail was carried out by high-performance liquid chromatography (HPLC)-inductively coupled argon plasma mass spectrometry (ICP MS). Urine contained arsenobetaine (AsB, 1.0%), arsenite (iAs(III), 11.3), arsenate (iAs(V), 10.1), monomethylarsonous acid (MMA(III), 6.6), monomethylarsonic acid (MMA(V), 10.5), dimethylarsinous acid (DMA(III), 13.0), and dimethylarsinic acid (DMA(V), 47.5); fingernail contained iAs(III) (62.4%), iAs(V) (20.2), MMA(V) (5.7), DMA(III) (8.9), and DMA(V) (2.8); hair contained iAs(III) (58.9%), iAs(V) (34.8), MMA(V) (2.9), and DMA(V) (3.4); RBCs contained AsB (22.5%) and DMA(V) (77.5); and blood plasma contained AsB (16.7%), iAs(III) (21.1), MMA(V) (27.1), and DMA(V) (35.1). MMA(III), DMA(III), and iAs(V) were not found in any plasma and RBCs samples, but urine contained all of them. Arsenic in urine, fingernails, and hair are positively correlated with water As, suggesting that any of these measurements could be considered as a biomarker to As exposure. Status of urine and exogenous contamination of hair urgently need speciation of As in these samples, but speciation of As in nail is related to its total As (tAs) concentration. Therefore, total As concentrations of nails could be considered as biomarker to As exposure in the endemic areas.

Speciation of arsenic in biological samples

International Nuclear Information System (INIS)

Mandal, Badal Kumar; Ogra, Yasumitsu; Anzai, Kazunori; Suzuki, Kazuo T.

2004-01-01

Speciation of arsenicals in biological samples is an essential tool to gain insight into its distribution in tissues and its species-specific toxicity to target organs. Biological samples (urine, hair, fingernail) examined in the present study were collected from 41 people of West Bengal, India, who were drinking arsenic (As)-contaminated water, whereas 25 blood and urine samples were collected from a population who stopped drinking As contaminated water 2 years before the blood collection. Speciation of arsenicals in urine, water-methanol extract of freeze-dried red blood cells (RBCs), trichloroacetic acid treated plasma, and water extract of hair and fingernail was carried out by high-performance liquid chromatography (HPLC)-inductively coupled argon plasma mass spectrometry (ICP MS). Urine contained arsenobetaine (AsB, 1.0%), arsenite (iAs III , 11.3), arsenate (iAs V , 10.1), monomethylarsonous acid (MMA III , 6.6), monomethylarsonic acid (MMA V , 10.5), dimethylarsinous acid (DMA III , 13.0), and dimethylarsinic acid (DMA V , 47.5); fingernail contained iAs III (62.4%), iAs V (20.2), MMA V (5.7), DMA III (8.9), and DMA V (2.8); hair contained iAs III (58.9%), iAs V (34.8), MMA V (2.9), and DMA V (3.4); RBCs contained AsB (22.5%) and DMA V (77.5); and blood plasma contained AsB (16.7%), iAs III (21.1), MMA V (27.1), and DMA V (35.1). MMA III , DMA III , and iAs V were not found in any plasma and RBCs samples, but urine contained all of them. Arsenic in urine, fingernails, and hair are positively correlated with water As, suggesting that any of these measurements could be considered as a biomarker to As exposure. Status of urine and exogenous contamination of hair urgently need speciation of As in these samples, but speciation of As in nail is related to its total As (tAs) concentration. Therefore, total As concentrations of nails could be considered as biomarker to As exposure in the endemic areas

Uranium(VI) speciation by spectroscopy

International Nuclear Information System (INIS)

Meinrath, G.

1997-01-01

The application of UV-Vis and time-resolved laser-induced fluorescence (TRLF) spectroscopies to direct of uranium(VI) in environmental samples offers various prospects that have, however, serious limitations. While UV-Vis spectroscopy is probably not sensitive enough to detect uranium(VI) species in the majority of environmental samples, TRLFS is principially able to speciate uranium(VI) at very low concentration levels in the nanomol range. Speciation by TRLFS can be based on three parameters: excitation spectrum, emission spectrum and lifetime of the fluorescence emission process. Due to quenching effects, the lifetime may not be expected to be as characteristics as, e.g., the emission spectrum. Quenching of U(VI) fluorescence by reaction with organic substances, inorganic ions and formation of carbonate radicals is one important limiting factor in the application of U(VI) fluorescence spectroscopy. Fundamental photophysical criteria are illustrated using UV-Vis and fluorescence spectra of U(VI) hydrolysis and carbonato species as examples. (author)

Speciation of Long-Lived Radionuclides in the Environment

DEFF Research Database (Denmark)

Hou, Xiaolin

, isotopes of Pu, and 237Np in seawater, fresh water, soil, sediment, vegetations, and concrete. The developed methods are used for the investigation of the chemical speciation of these radionuclides as well as their environmental behaviours, especially in Danish environment. In addition the speciation of Pu...... isotopes in waste samples from the decommissioning of Danish nuclear facilities is also investigated. The report summarizes these works completed in this project. Through this research project, a number of research papers have been published in the scientific journals, the research results has also been...

Trace element speciation in the environment

International Nuclear Information System (INIS)

Heumann, Klaus G.

2001-01-01

The production of methylated heavy metal species in the ocean was reviewed and shown to be correlated with biological parameters demonstrating them to be of biogenic origin. Methods for the determination of the species were discussed. The potential for the use of isotopic spiking either in 'species specific' or 'non-species specific' formats was identified as a valuable tool in the struggle for accuracy, specificity and precision in speciation analysis. The value of using a size exclusion chromatographic method in conjunction with non-species specific spiking IDMS was highlighted with an example illustrating the molecular mass fractions associated with halogenated species from a humic sample. Additional recommendations that the Agency might wish to consider when evaluating its potential role as a service to Member States engaged in speciation activities are also given

Critical roles for a genetic code alteration in the evolution of the genus Candida.

Science.gov (United States)

Silva, Raquel M; Paredes, João A; Moura, Gabriela R; Manadas, Bruno; Lima-Costa, Tatiana; Rocha, Rita; Miranda, Isabel; Gomes, Ana C; Koerkamp, Marian J G; Perrot, Michel; Holstege, Frank C P; Boucherie, Hélian; Santos, Manuel A S

2007-10-31

During the last 30 years, several alterations to the standard genetic code have been discovered in various bacterial and eukaryotic species. Sense and nonsense codons have been reassigned or reprogrammed to expand the genetic code to selenocysteine and pyrrolysine. These discoveries highlight unexpected flexibility in the genetic code, but do not elucidate how the organisms survived the proteome chaos generated by codon identity redefinition. In order to shed new light on this question, we have reconstructed a Candida genetic code alteration in Saccharomyces cerevisiae and used a combination of DNA microarrays, proteomics and genetics approaches to evaluate its impact on gene expression, adaptation and sexual reproduction. This genetic manipulation blocked mating, locked yeast in a diploid state, remodelled gene expression and created stress cross-protection that generated adaptive advantages under environmental challenging conditions. This study highlights unanticipated roles for codon identity redefinition during the evolution of the genus Candida, and strongly suggests that genetic code alterations create genetic barriers that speed up speciation.

Implementation and use of Gaussian process meta model for sensitivity analysis of numerical models: application to a hydrogeological transport computer code

International Nuclear Information System (INIS)

Marrel, A.

2008-01-01

In the studies of environmental transfer and risk assessment, numerical models are used to simulate, understand and predict the transfer of pollutant. These computer codes can depend on a high number of uncertain input parameters (geophysical variables, chemical parameters, etc.) and can be often too computer time expensive. To conduct uncertainty propagation studies and to measure the importance of each input on the response variability, the computer code has to be approximated by a meta model which is build on an acceptable number of simulations of the code and requires a negligible calculation time. We focused our research work on the use of Gaussian process meta model to make the sensitivity analysis of the code. We proposed a methodology with estimation and input selection procedures in order to build the meta model in the case of a high number of inputs and with few simulations available. Then, we compared two approaches to compute the sensitivity indices with the meta model and proposed an algorithm to build prediction intervals for these indices. Afterwards, we were interested in the choice of the code simulations. We studied the influence of different sampling strategies on the predictiveness of the Gaussian process meta model. Finally, we extended our statistical tools to a functional output of a computer code. We combined a decomposition on a wavelet basis with the Gaussian process modelling before computing the functional sensitivity indices. All the tools and statistical methodologies that we developed were applied to the real case of a complex hydrogeological computer code, simulating radionuclide transport in groundwater. (author) [fr

Speciation analysis of radionuclides

International Nuclear Information System (INIS)

Salbu, B.

2010-01-01

Full text: Naturally occurring and artificially produced radionuclides in the environment can be present in different physico-chemical forms (i. e. radionuclide species) varying in size (nominal molecular mass), charge properties and valence, oxidation state, structure and morphology, density, complexing ability etc. Low molecular mass (LMM) species are believed to be mobile and potentially bioavailable, while high molecular mass (HMM) species such as colloids, polymers, pseudocolloids and particles are considered inert. Due to time dependent transformation processes such as mobilization of radionuclide species from solid phases or interactions of mobile and reactive radionuclide species with components in soils and sediments, however, the original distribution of radionuclides deposited in ecosystems will change over time and influence the ecosystem behaviour. To assess the environmental impact from radionuclide contamination, information on radionuclide species deposited, interactions within affected ecosystems and the time-dependent distribution of radionuclide species influencing mobility and biological uptake is essential. The development of speciation techniques to characterize radionuclide species in waters, soils and sediments should therefore be essential for improving the prediction power of impact and risk assessment models. The present paper reviews fractionation techniques which should be utilised for radionuclide speciation purposes. (author)

Uranium speciation in Fernald soils

International Nuclear Information System (INIS)

Morris, D.E.; Conradson, S.D.; Tait, C.D.; Chisholm-Brause, C.J.; Berg, J.; Musgrave, J.

1992-01-01

This report details progress made from January 1 to May 31, 1992 in this analytical support task to determine the speciation of uranium in contaminated soil samples from the Fernald Environmental Management Project site under the auspices of the Uranium in Soils Integrated Demonstration funded through the US DOE's Office of Technology Development. The authors' efforts have focused on characterization of soil samples collected by S.Y. Lee (Oak Ridge National Laboratory) from five locales at the Fernald site. These were chosen to sample a broad range of uranium source terms. On the basis of x-ray absorption spectroscopy data, they have determined that the majority of uranium (> 80--90%) exists in the hexavalent oxidation state for all samples examined. This is a beneficial finding from the perspective of remediation, because U(VI) species are more soluble in general than uranium species in other oxidation states. Optical luminescence data from many of the samples show the characteristic structured yellow-green emission from the uranyl (UO 2 2+ ) moiety. The luminescence data also suggest that much of the uranium in these soils is present as well-crystallized UO 2 2+ species. Some clear spectroscopic distinctions have been noted for several samples that illustrate significant differences in the speciation (1) from site to site, (2) within different horizons at the same site, and (3) within different size fractions of the soils in the same horizon at the same site. This marked heterogeneity in uranyl speciation suggests that several soil washing strategies may be necessary to reduce the total uranium concentrations within these soils to regulatory limits

Comparison of two numerical modelling codes for hydraulic and transport calculations in the near-field

International Nuclear Information System (INIS)

Kalin, J.; Petkovsek, B.; Montarnal, Ph.; Genty, A.; Deville, E.; Krivic, J.; Ratej, J.

2011-01-01

In the past years the Slovenian Performance Analysis/Safety Assessment team has performed many generic studies for the future Slovenian low and intermediate level waste repository, most recently a Special Safety Analysis for the Krsko site. The modelling approach was to split the problem into three parts: near-field (detailed model of the repository), far-field (i.e., geosphere) and biosphere. In the Special Safety Analysis the code used to perform the near-field calculations was Hydrus2D. Recently the team has begun a cooperation with the French Commisariat al'Energie Atomique/Saclay (CEA/Saclay) and, as a part of this cooperation, began investigations into using the Alliances numerical platform for near-field calculations in order to compare the overall approach and calculated results. The article presents the comparison between these two codes for a silo-type repository that was considered in the Special Safety Analysis. The physical layout and characteristics of the repository are presented and a hydraulic and transport model of the repository is developed and implemented in Alliances. Some analysis of sensitivity to mesh fineness and to simulation timestep has been preformed and is also presented. The compared quantity is the output flux of radionuclides on the boundary of the model. Finally the results from Hydrus2D and Alliances are compared and the differences and similarities are commented.

Comparison of two numerical modelling codes for hydraulic and transport calculations in the near-field

Energy Technology Data Exchange (ETDEWEB)

Kalin, J., E-mail: jan.kalin@zag.s [Slovenian National Building and Civil Engineering Institute, Dimiceva 12, SI-1000 Ljubljana (Slovenia); Petkovsek, B., E-mail: borut.petkovsek@zag.s [Slovenian National Building and Civil Engineering Institute, Dimiceva 12, SI-1000 Ljubljana (Slovenia); Montarnal, Ph., E-mail: philippe.montarnal@cea.f [CEA/Saclay, DM2S/SFME/LSET, Gif-sur-Yvette, 91191 cedex (France); Genty, A., E-mail: alain.genty@cea.f [CEA/Saclay, DM2S/SFME/LSET, Gif-sur-Yvette, 91191 cedex (France); Deville, E., E-mail: estelle.deville@cea.f [CEA/Saclay, DM2S/SFME/LSET, Gif-sur-Yvette, 91191 cedex (France); Krivic, J., E-mail: jure.krivic@geo-zs.s [Geological Survey of Slovenia, Dimiceva 14, SI-1000 Ljubljana (Slovenia); Ratej, J., E-mail: joze.ratej@geo-zs.s [Geological Survey of Slovenia, Dimiceva 14, SI-1000 Ljubljana (Slovenia)

2011-04-15

In the past years the Slovenian Performance Analysis/Safety Assessment team has performed many generic studies for the future Slovenian low and intermediate level waste repository, most recently a Special Safety Analysis for the Krsko site. The modelling approach was to split the problem into three parts: near-field (detailed model of the repository), far-field (i.e., geosphere) and biosphere. In the Special Safety Analysis the code used to perform the near-field calculations was Hydrus2D. Recently the team has begun a cooperation with the French Commisariat al'Energie Atomique/Saclay (CEA/Saclay) and, as a part of this cooperation, began investigations into using the Alliances numerical platform for near-field calculations in order to compare the overall approach and calculated results. The article presents the comparison between these two codes for a silo-type repository that was considered in the Special Safety Analysis. The physical layout and characteristics of the repository are presented and a hydraulic and transport model of the repository is developed and implemented in Alliances. Some analysis of sensitivity to mesh fineness and to simulation timestep has been preformed and is also presented. The compared quantity is the output flux of radionuclides on the boundary of the model. Finally the results from Hydrus2D and Alliances are compared and the differences and similarities are commented.

Purex process modelling - do we really need speciation data?

International Nuclear Information System (INIS)

Taylor, R.J.; May, I.

2001-01-01

The design of reprocessing flowsheets has become a complex process requiring sophisticated simulation models, containing both chemical and engineering features. Probably the most basic chemical data needed is the distribution of process species between solvent and aqueous phases at equilibrium, which is described by mathematical algorithms. These algorithms have been constructed from experimentally determined distribution coefficients over a wide range of conditions. Distribution algorithms can either be empirical fits of the data or semi-empirical equations, which describe extraction as functions of process variables such as temperature, activity coefficients, uranium loading, etc. Speciation data is not strictly needed in the accumulation of distribution coefficients, which are simple ratios of analyte concentration in the solvent phase to that in the aqueous phase. However, as we construct process models of increasing complexity, speciation data becomes much more important both to raise confidence in the model and to understand the process chemistry at a more fundamental level. UV/vis/NIR spectrophotometry has been our most commonly used speciation method since it is a well-established method for the analysis of actinide ion oxidation states in solution at typical process concentrations. However, with the increasing availability to actinide science of more sophisticated techniques (e.g. NMR; EXAFS) complementary structural information can often be obtained. This paper will, through examples, show how we have used spectrophotometry as a primary tool in distribution and kinetic experiments to obtain data for process models, which are then validated through counter-current flowsheet trials. It will also discuss how spectrophotometry and other speciation methods are allowing us to study the link between molecular structure and extraction behaviour, showing how speciation data really is important in PUREX process modelling. (authors)

Stiffness and the automatic selection of ODE codes

International Nuclear Information System (INIS)

Shampine, L.F.

1984-01-01

The author describes the basic ideas behind the most popular methods for the numerical solution of ordinary differential equations (ODEs). He takes up the qualitative behavior of solutions of ODEs and its relation ot the propagation of numerical error. Codes for ODEs are intended either for stiff problems or for non-stiff problems. The difference is explained. Users of codes do not have the information needed to recognize stiffness. A code, DEASY, which automatically recognizes stiffness and selects a suitable method is described

Modeling Non-Steady Isotopologue and Isotopomer Speciation and Fractionation during Denitrification in Soils

Science.gov (United States)

Maggi, F.; Riley, W. J.

2009-12-01

The composition and location of 15N atoms on N2O isotopomers and isotopologues during isotope speciation has been used to characterize soil biological N cycling and N2O surface emissions. Although there exist few experimental observations, no attempt has been made to model N2O isotopomer speciation. The mathematical treatment of biological kinetic reactions in isotopic applications normally makes use of first-order and quasi steady-state complexation assumptions without taking into account changes in enzyme concentration, reaction stoichiometry, and isotopologue and isotopomer speciation. When multiatomic isotopically-labeled reactants are used in a multi-molecurar reaction, these assumptions may fail since they always lead to a constant fractionation factor and cannot describe speciation of isotopologues and isotopomers. We have developed a mathematical framework that is capable of describing isotopologue and isotopmer speciation and fractionation under the assumption of non-steady complexation during biological kinetic reactions that overcome the limitations mentioned above. This framework was applied to a case study of non-steady (variable and inverse) isotopic effects observed during N2O production and consumption in soils. Our mathematical treatment has led to generalized kinetic equations which replicate experimental observations with high accuracy and help interpret non-steady isotopic effects and isotopologue and isotopomer speciation. The kinetic equations introduced and applied here have general validity in describing isotopic effects in any biochemical reactions by considering: changing enzyme concentrations, mass and isotope conservation, and reaction stoichiometry. The equations also describe speciation of any isotopologue and isotopomer product from any isotopologue and isotopmer reactant.

Sex chromosomes and speciation in birds and other ZW systems.

Science.gov (United States)

Irwin, Darren E

2018-02-14

Theory and empirical patterns suggest a disproportionate role for sex chromosomes in evolution and speciation. Focusing on ZW sex determination (females ZW, males ZZ; the system in birds, many snakes, and lepidopterans), I review how evolutionary dynamics are expected to differ between the Z, W and the autosomes, discuss how these differences may lead to a greater role of the sex chromosomes in speciation and use data from birds to compare relative evolutionary rates of sex chromosomes and autosomes. Neutral mutations, partially or completely recessive beneficial mutations, and deleterious mutations under many conditions are expected to accumulate faster on the Z than on autosomes. Sexually antagonistic polymorphisms are expected to arise on the Z, raising the possibility of the spread of preference alleles. The faster accumulation of many types of mutations and the potential for complex evolutionary dynamics of sexually antagonistic traits and preferences contribute to a role for the Z chromosome in speciation. A quantitative comparison among a wide variety of bird species shows that the Z tends to have less within-population diversity and greater between-species differentiation than the autosomes, likely due to both adaptive evolution and a greater rate of fixation of deleterious alleles. The W chromosome also shows strong potential to be involved in speciation, in part because of its co-inheritance with the mitochondrial genome. While theory and empirical evidence suggest a disproportionate role for sex chromosomes in speciation, the importance of sex chromosomes is moderated by their small size compared to the whole genome. © 2018 John Wiley & Sons Ltd.

Evolution: sympatric speciation the eusocial way

DEFF Research Database (Denmark)

Boomsma, Jacobus Jan; Nash, David Richard

2014-01-01

Sympatric speciation normally requires particular conditions of ecological niche differentiation. However, ant social parasites have been suspected to arise sympatrically, because (dis)loyalty to eusocial kin-structures induces disruptive selection for dispersal and inbreeding. A new study docume...

Towards accounting for dissolved iron speciation in global ocean models

Directory of Open Access Journals (Sweden)

A. Tagliabue

2011-10-01

Full Text Available The trace metal iron (Fe is now routinely included in state-of-the-art ocean general circulation and biogeochemistry models (OGCBMs because of its key role as a limiting nutrient in regions of the world ocean important for carbon cycling and air-sea CO₂ exchange. However, the complexities of the seawater Fe cycle, which impact its speciation and bioavailability, are simplified in such OGCBMs due to gaps in understanding and to avoid high computational costs. In a similar fashion to inorganic carbon speciation, we outline a means by which the complex speciation of Fe can be included in global OGCBMs in a reasonably cost-effective manner. We construct an Fe speciation model based on hypothesised relationships between rate constants and environmental variables (temperature, light, oxygen, pH, salinity and assumptions regarding the binding strengths of Fe complexing organic ligands and test hypotheses regarding their distributions. As a result, we find that the global distribution of different Fe species is tightly controlled by spatio-temporal environmental variability and the distribution of Fe binding ligands. Impacts on bioavailable Fe are highly sensitive to assumptions regarding which Fe species are bioavailable and how those species vary in space and time. When forced by representations of future ocean circulation and climate we find large changes to the speciation of Fe governed by pH mediated changes to redox kinetics. We speculate that these changes may exert selective pressure on phytoplankton Fe uptake strategies in the future ocean. In future work, more information on the sources and sinks of ocean Fe ligands, their bioavailability, the cycling of colloidal Fe species and kinetics of Fe-surface coordination reactions would be invaluable. We hope our modeling approach can provide a means by which new observations of Fe speciation can be tested against hypotheses of the processes present in governing the ocean Fe cycle in an

A numerical study of the influence of the void drift model on the predictions of the assert subchannel code

International Nuclear Information System (INIS)

Tye, P.; Teyssedou, A.; Troche, N.; Kiteley, J.

1996-01-01

One of the factors which is important in order to ensure the continued safe operation of nuclear reactors is the ability to accurately predict the 'Critical Heat Flux' (CHF) throughout the rod bundles in the fuel channel. One method currently used by the Canadian nuclear industry to predict the CHF in the fuel bundles of CANDU reactors is to use the ASSERT subchannel code to predict the local thermal-hydraulic conditions prevailing at each axial location in each subchannel in conjunction with appropriate correlations or the CHF look-up table. The successful application of the above methods depends greatly on the ability of ASSERT to accurately predict the local flow conditions throughout the fuel channel. In this paper, full range qualitative verification tests, using the ASSERT subchannel code are presented which show the influence of the void drift model on the predictions of the local subchannel quality. For typical cases using a 7 rod subset of a full 37 element rod bundle taken from the ASSERT validation database, it will be shown that the void drift term can significantly influence the calculated distribution of the quality in the rod bundle. In order to isolate, as much as possible, the influence of the void drift term this first numerical study is carried out with the rod bundle oriented both vertically and horizontally. Subsequently, additional numerical experiments will be presented which show the influence that the void drift model has on the predicted CHF locations. (author)

Introduction of SCIENCE code package

International Nuclear Information System (INIS)

Lu Haoliang; Li Jinggang; Zhu Ya'nan; Bai Ning

2012-01-01

The SCIENCE code package is a set of neutronics tools based on 2D assembly calculations and 3D core calculations. It is made up of APOLLO2F, SMART and SQUALE and used to perform the nuclear design and loading pattern analysis for the reactors on operation or under construction of China Guangdong Nuclear Power Group. The purpose of paper is to briefly present the physical and numerical models used in each computation codes of the SCIENCE code pack age, including the description of the general structure of the code package, the coupling relationship of APOLLO2-F transport lattice code and SMART core nodal code, and the SQUALE code used for processing the core maps. (authors)

Catalogue of nuclear fusion codes - 1976

International Nuclear Information System (INIS)

1976-10-01

A catalogue is presented of the computer codes in nuclear fusion research developed by JAERI, Division of Thermonuclear Fusion Research and Division of Large Tokamak Development in particular. It contains a total of about 100 codes under the categories: Atomic Process, Data Handling, Experimental Data Processing, Engineering, Input and Output, Special Languages and Their Application, Mathematical Programming, Miscellaneous, Numerical Analysis, Nuclear Physics, Plasma Physics and Fusion Research, Plasma Simulation and Numerical Technique, Reactor Design, Solid State Physics, Statistics, and System Program. (auth.)

SENR /NRPy + : Numerical relativity in singular curvilinear coordinate systems

Science.gov (United States)

Ruchlin, Ian; Etienne, Zachariah B.; Baumgarte, Thomas W.

2018-03-01

We report on a new open-source, user-friendly numerical relativity code package called SENR /NRPy + . Our code extends previous implementations of the BSSN reference-metric formulation to a much broader class of curvilinear coordinate systems, making it ideally suited to modeling physical configurations with approximate or exact symmetries. In the context of modeling black hole dynamics, it is orders of magnitude more efficient than other widely used open-source numerical relativity codes. NRPy + provides a Python-based interface in which equations are written in natural tensorial form and output at arbitrary finite difference order as highly efficient C code, putting complex tensorial equations at the scientist's fingertips without the need for an expensive software license. SENR provides the algorithmic framework that combines the C codes generated by NRPy + into a functioning numerical relativity code. We validate against two other established, state-of-the-art codes, and achieve excellent agreement. For the first time—in the context of moving puncture black hole evolutions—we demonstrate nearly exponential convergence of constraint violation and gravitational waveform errors to zero as the order of spatial finite difference derivatives is increased, while fixing the numerical grids at moderate resolution in a singular coordinate system. Such behavior outside the horizons is remarkable, as numerical errors do not converge to zero near punctures, and all points along the polar axis are coordinate singularities. The formulation addresses such coordinate singularities via cell-centered grids and a simple change of basis that analytically regularizes tensor components with respect to the coordinates. Future plans include extending this formulation to allow dynamical coordinate grids and bispherical-like distribution of points to efficiently capture orbiting compact binary dynamics.

Numerical and Experimental Investigations of the Flow in a Stationary Pelton Bucket

Science.gov (United States)

Nakanishi, Yuji; Fujii, Tsuneaki; Kawaguchi, Sho

A numerical code based on one of mesh-free particle methods, a Moving-Particle Semi-implicit (MPS) Method has been used for the simulation of free surface flows in a bucket of Pelton turbines so far. In this study, the flow in a stationary bucket is investigated by MPS simulation and experiment to validate the numerical code. The free surface flow dependent on the angular position of the bucket and the corresponding pressure distribution on the bucket computed by the numerical code are compared with that obtained experimentally. The comparison shows that numerical code based on MPS method is useful as a tool to gain an insight into the free surface flows in Pelton turbines.

Sample preparation and storage can change arsenic speciation in human urine.

Science.gov (United States)

Feldmann, J; Lai, V W; Cullen, W R; Ma, M; Lu, X; Le, X C

1999-11-01

Stability of chemical speciation during sample handling and storage is a prerequisite to obtaining reliable results of trace element speciation analysis. There is no comprehensive information on the stability of common arsenic species, such as inorganic arsenite [As(III)], arsenate [As(V)], monomethylarsonic acid, dimethylarsinic acid, and arsenobetaine, in human urine. We compared the effects of the following storage conditions on the stability of these arsenic species: temperature (25, 4, and -20 degrees C), storage time (1, 2, 4, and 8 months), and the use of additives (HCl, sodium azide, benzoic acid, benzyltrimethylammonium chloride, and cetylpyridinium chloride). HPLC with both inductively coupled plasma mass spectrometry and hydride generation atomic fluorescence detection techniques were used for the speciation of arsenic. We found that all five of the arsenic species were stable for up to 2 months when urine samples were stored at 4 and -20 degrees C without any additives. For longer period of storage (4 and 8 months), the stability of arsenic species was dependent on urine matrices. Whereas the arsenic speciation in some urine samples was stable for the entire 8 months at both 4 and -20 degrees C, other urine samples stored under identical conditions showed substantial changes in the concentration of As(III), As(V), monomethylarsonic acid, and dimethylarsinic acid. The use of additives did not improve the stability of arsenic speciation in urine. The addition of 0.1 mol/L HCl (final concentration) to urine samples produced relative changes in inorganic As(III) and As(V) concentrations. Low temperature (4 and -20 degrees C) conditions are suitable for the storage of urine samples for up to 2 months. Untreated samples maintain their concentration of arsenic species, and additives have no particular benefit. Strong acidification is not appropriate for speciation analysis.

ARSENIC SPECIATION ANALYSIS IN HUMAN SALIVA

Science.gov (United States)

Background: Determination of arsenic species in human saliva is potentially useful for biomonitoring of human exposure to arsenic and for studying arsenic metabolism. However, there is no report on the speciation analysis of arsenic in saliva. Methods: Arsenic species in saliva ...

Hitchhiking to speciation.

Directory of Open Access Journals (Sweden)

Daven C Presgraves

Full Text Available The modern evolutionary synthesis codified the idea that species exist as distinct entities because intrinsic reproductive barriers prevent them from merging together. Understanding the origin of species therefore requires understanding the evolution and genetics of reproductive barriers between species. In most cases, speciation is an accident that happens as different populations adapt to different environments and, incidentally, come to differ in ways that render them reproductively incompatible. As with other reproductive barriers, the evolution and genetics of interspecific hybrid sterility and lethality were once also thought to evolve as pleiotripic side effects of adaptation. Recent work on the molecular genetics of speciation has raised an altogether different possibility-the genes that cause hybrid sterility and lethality often come to differ between species not because of adaptation to the external ecological environment but because of internal evolutionary arms races between selfish genetic elements and the genes of the host genome. Arguably one of the best examples supporting a role of ecological adaptation comes from a population of yellow monkey flowers, Mimulus guttatus, in Copperopolis, California, which recently evolved tolerance to soil contaminants from copper mines and simultaneously, as an incidental by-product, hybrid lethality in crosses with some off-mine populations. However, in new work, Wright and colleagues show that hybrid lethality is not a pleiotropic consequence of copper tolerance. Rather, the genetic factor causing hybrid lethality is tightly linked to copper tolerance and spread to fixation in Copperopolis by genetic hitchhiking.

Joint design of QC-LDPC codes for coded cooperation system with joint iterative decoding

Science.gov (United States)

Zhang, Shunwai; Yang, Fengfan; Tang, Lei; Ejaz, Saqib; Luo, Lin; Maharaj, B. T.

2016-03-01

In this paper, we investigate joint design of quasi-cyclic low-density-parity-check (QC-LDPC) codes for coded cooperation system with joint iterative decoding in the destination. First, QC-LDPC codes based on the base matrix and exponent matrix are introduced, and then we describe two types of girth-4 cycles in QC-LDPC codes employed by the source and relay. In the equivalent parity-check matrix corresponding to the jointly designed QC-LDPC codes employed by the source and relay, all girth-4 cycles including both type I and type II are cancelled. Theoretical analysis and numerical simulations show that the jointly designed QC-LDPC coded cooperation well combines cooperation gain and channel coding gain, and outperforms the coded non-cooperation under the same conditions. Furthermore, the bit error rate performance of the coded cooperation employing jointly designed QC-LDPC codes is better than those of random LDPC codes and separately designed QC-LDPC codes over AWGN channels.

Complete genomes of Hairstreak butterflies, their speciation, and nucleo-mitochondrial incongruence.

Science.gov (United States)

Cong, Qian; Shen, Jinhui; Borek, Dominika; Robbins, Robert K; Otwinowski, Zbyszek; Grishin, Nick V

2016-04-28

Comparison of complete genomes of closely related species enables research on speciation and how phenotype is determined by genotype. Lepidoptera, an insect order of 150,000 species with diverse phenotypes, is well-suited for such comparative genomics studies if new genomes, which cover additional Lepidoptera families are acquired. We report a 729 Mbp genome assembly of the Calycopis cecrops, the first genome from the family Lycaenidae and the largest available Lepidoptera genome. As detritivore, Calycopis shows expansion in detoxification and digestion enzymes. We further obtained complete genomes of 8 Calycopis specimens: 3 C. cecrops and 5 C. isobeon, including a dry specimen stored in the museum for 30 years. The two species differ subtly in phenotype and cannot be differentiated by mitochondrial DNA. However, nuclear genomes revealed a deep split between them. Genes that can clearly separate the two species (speciation hotspots) mostly pertain to circadian clock, mating behavior, transcription regulation, development and cytoskeleton. The speciation hotspots and their function significantly overlap with those we previously found in Pterourus, suggesting common speciation mechanisms in these butterflies.

Transport theory and codes

International Nuclear Information System (INIS)

Clancy, B.E.

1986-01-01

This chapter begins with a neutron transport equation which includes the one dimensional plane geometry problems, the one dimensional spherical geometry problems, and numerical solutions. The section on the ANISN code and its look-alikes covers problems which can be solved; eigenvalue problems; outer iteration loop; inner iteration loop; and finite difference solution procedures. The input and output data for ANISN is also discussed. Two dimensional problems such as the DOT code are given. Finally, an overview of the Monte-Carlo methods and codes are elaborated on

Study of solution speciation, soil retention and soil-plant transfer of zirconium

International Nuclear Information System (INIS)

Ferrand, E.

2005-12-01

Within the framework of the risks prevention policy of Andra, the radioactive zirconium introduction ( 93 Zr and 95 Zr) into the environment could be carried out starting from the nuclear waste whose storage is envisaged in deep geological layers. Thus, the goal of this study was to evaluate the parameters and phenomena influencing speciation (various chemical forms) and the soil-plant transfer of zirconium. Experiments of adsorption/desorption of zirconium with different ligands likely to be present in soils (goethite and humic acid) and with two soils, with contrasted characteristics, close to the underground research laboratory of Andra (Meuse) were carried out. These results of adsorption were then confronted with those obtained by the MUSIC and NICA-DONNAN models carried out using the computer code ECOSAT. Zr presents a strong affinity for the two types of soils and the soils constituents. Specific interactions of internal sphere type with the goethite were highlighted using the model. Soil-solution partition coefficients, or K d , values increase with pH and contact time. Various types of edible plants, pea (Pisum sativum L.) and tomato (Lycopersicon esculentum L cv. St Pierre) were cultivated in hydroponic conditions and in soils spiked with various sources of Zirconium. The maximum zirconium contents are mainly measured in the roots of the plants. The soil-plant transfer factors measured during these experiments show a weak bioavailability of zirconium. An influence of speciation on Zr bioavailability is however highlighted. Some chemical forms, such as oxychloride or acetate, are more easily mobilized than others by the plant. (author)

Numerical study of the ITER divertor plasma with the B2-EIRENE code package

Energy Technology Data Exchange (ETDEWEB)

Kotov, V.; Reiter, D. [Forschungszentrum Juelich (DE). Inst. fuer Energieforschung (IEF), Plasmaphysik (IEF-4); Kukushkin, A.S. [ITER International Team, Cadarache (France)

2007-11-15

The problem of plasma-wall interaction and impurity control is one of the remaining critical issues for development of an industrial energy source based on nuclear fusion of light isotopes. In this field sophisticated integrated numerical tools are widely used both for the analysis of current experiments and for predictions guiding future device design. The present work is dedicated to the numerical modelling of the edge plasma region in divertor configurations of large-scale tokamak fusion devices. A well established software tool for this kind of modelling is the B2-EIRENE code. It was originally developed for a relatively hot (>> 10 eV) ''high recycling divertor''. It did not take into account a number of physical effects which can be potentially important for ''detached conditions'' (cold, - several eV, - high density, - {approx} 10{sup 21} m{sup -3}, - plasma) typical for large tokamak devices. This is especially critical for the modelling of the divertor plasma of ITER: an international project of an experimental tokamak fusion reactor to be built in Cadarache, France by 2016. This present work is devoted to a major upgrade of the B2-EIRENE package, which is routinely used for ITER modelling, essentially with a significantly revised version of EIRENE: the Monte-Carlo neutral transport code. The main part of the thesis address three major groups of the new physical effects which have been added to the model in frame of this work: the neutral-neutral collisions, the up-to date hydrogen molecular reaction kinetics and the line radiation transport. The impact of the each stage of the upgrade on the self-consistent (between plasma, the neutral gas and the radiation field) solution for the reference ITER case is analysed. The strongest effect is found to be due to the revised molecular collision kinetics, in particular due to hitherto neglected elastic collisions of hydrogen molecules with ions. The newly added non

Numerical study of the ITER divertor plasma with the B2-EIRENE code package

International Nuclear Information System (INIS)

Kotov, V.; Reiter, D.; Kukushkin, A.S.

2007-11-01

The problem of plasma-wall interaction and impurity control is one of the remaining critical issues for development of an industrial energy source based on nuclear fusion of light isotopes. In this field sophisticated integrated numerical tools are widely used both for the analysis of current experiments and for predictions guiding future device design. The present work is dedicated to the numerical modelling of the edge plasma region in divertor configurations of large-scale tokamak fusion devices. A well established software tool for this kind of modelling is the B2-EIRENE code. It was originally developed for a relatively hot (>> 10 eV) ''high recycling divertor''. It did not take into account a number of physical effects which can be potentially important for ''detached conditions'' (cold, - several eV, - high density, - ∼ 10 21 m -3 , - plasma) typical for large tokamak devices. This is especially critical for the modelling of the divertor plasma of ITER: an international project of an experimental tokamak fusion reactor to be built in Cadarache, France by 2016. This present work is devoted to a major upgrade of the B2-EIRENE package, which is routinely used for ITER modelling, essentially with a significantly revised version of EIRENE: the Monte-Carlo neutral transport code. The main part of the thesis address three major groups of the new physical effects which have been added to the model in frame of this work: the neutral-neutral collisions, the up-to date hydrogen molecular reaction kinetics and the line radiation transport. The impact of the each stage of the upgrade on the self-consistent (between plasma, the neutral gas and the radiation field) solution for the reference ITER case is analysed. The strongest effect is found to be due to the revised molecular collision kinetics, in particular due to hitherto neglected elastic collisions of hydrogen molecules with ions. The newly added non-linear effects (neutral-neutral collisions, radiation opacity

Overview of receptor-based source apportionment studies for speciated atmospheric mercury

OpenAIRE

Cheng, I.; Xu, X.; Zhang, L.

2015-01-01

Receptor-based source apportionment studies of speciated atmospheric mercury are not only concerned with source contributions but also with the influence of transport, transformation, and deposition processes on speciated atmospheric mercury concentrations at receptor locations. Previous studies applied multivariate receptor models including principal components analysis and positive matrix factorization, and back trajectory receptor models including potential source contri...

Speciation and zoogeography of amphibian in Sundaland

Directory of Open Access Journals (Sweden)

Nia Kurniawan

2015-12-01

Full Text Available Sundaland is an interesting area to be explored based on its geological history, topography, and climate. Sundaland consists of Penisular Malaysia, Sumatra, Borneo, and Java which experienced some emergence and submergence process in the past. During 1981-2015, most of research in Sundaland found that amphibian family in Sundaland was dominated by Bufonidae, Ranidae, Microhylidae, Megophrydae, Rachophoridae, and Dicroglossidae which experienced lot of speciation in its history. Among of 4 major islands in Sundaland, Borneo has the highest number of species diversity, then Peninsular Malaysia, Sumatra, and Java. During those years, Sumatra and Java got least concern by researcher. Therefore, it is suggested for further study to explore more in Sumatra and Java. Keywords: Sundaland, amphibian, speciation, zoogeography.

Electrochemical metal speciation in colloidal dispersions

NARCIS (Netherlands)

Wonders, J.H.A.M.

1995-01-01

The term "heavy metals" is connected with toxicity. They form strong complexes with enzymes, other proteins and DNA in living organisms, which causes dysfunctioning and hence poisoning. In combination with the uptake mechanism of the organism, speciation of heavy metal determines the

Geography, assortative mating, and the effects of sexual selection on speciation with gene flow.

Science.gov (United States)

Servedio, Maria R

2016-01-01

Theoretical and empirical research on the evolution of reproductive isolation have both indicated that the effects of sexual selection on speciation with gene flow are quite complex. As part of this special issue on the contributions of women to basic and applied evolutionary biology, I discuss my work on this question in the context of a broader assessment of the patterns of sexual selection that lead to, versus inhibit, the speciation process, as derived from theoretical research. In particular, I focus on how two factors, the geographic context of speciation and the mechanism leading to assortative mating, interact to alter the effect that sexual selection through mate choice has on speciation. I concentrate on two geographic contexts: sympatry and secondary contact between two geographically separated populations that are exchanging migrants and two mechanisms of assortative mating: phenotype matching and separate preferences and traits. I show that both of these factors must be considered for the effects of sexual selection on speciation to be inferred.

Pu speciation in actual and simulated aged wastes

Energy Technology Data Exchange (ETDEWEB)

Lezama-pacheco, Juan S [Los Alamos National Laboratory; Conradson, Steven D [Los Alamos National Laboratory

2008-01-01

X-ray Absorption Fine Structure Spectroscopy (XAFS) at the Pu L{sub II/III} edge was used to determine the speciation of this element in (1) Hanford Z-9 Pu crib samples, (2) deteriorated waste resins from a chloride process ion-exchange purification line, and (3) the sediments from two Waste Isolation Pilot Plant Liter Scale simulant brine systems. The Pu speciation in all of these samples except one is within the range previously displayed by PuO{sub 2+x-2y}(OH){sub y}{center_dot}zH{sub 2}O compounds, which is expected based on the putative thermodynamic stability of this system for Pu equilibrated with excess H{sub 2}O and O{sub 2} under environmental conditions. The primary exception was a near neutral brine experiment that displayed evidence for partial substitution of the normal O-based ligands with Cl{sup -} and a concomitant expansion of the Pu-Pu distance relative to the much more highly ordered Pu near neighbor shell in PuO{sub 2}. However, although the Pu speciation was not necessarily unusual, the Pu chemistry identified via the history of these samples did exhibit unexpected patterns, the most significant of which may be that the presence of the Pu(V)-oxo species may decrease rather than increase the overall solubility of these compounds. Several additional aspects of the Pu speciation have also not been previously observed in laboratory-based samples. The molecular environmental chemistry of Pu is therefore likely to be more complicated than would be predicted based solely on the behavior of PuO{sub 2} under laboratory conditions.

Numerical simulation of fragmentation of hot metal and oxide melts with the computer code IVA3

International Nuclear Information System (INIS)

Mussa, S.; Tromm, W.

1994-01-01

The phenomena of fragmentation of melts caused by water-inlet from the bottom with the computer code IVA3/11,12,13/ are investigated. With the computer code IVA3 three-component-multiphase flows can be numerically simulated. Two geometrical models are used. Both consist of a cylindrical vessel for water lying beneath a cylindrical vessel for melt. The vessels are connected to each other through a hole. Steel and UO 2 melts are. The following parameters were varied: the type of the melt (steel,UO 2 ), the water supply pressure and the geometry of the hole in the bottom plate through which the water and melt vessels are connected. As results of the numerical simulations temperature and pressure versus time curves are plotted. Additionally the volume flow rates and the volume fractions of the various phases in the vessels and the increase in surface and enthalpy of the melt during the time of simulation are depicted. With steel melts the rate of fragmentation increases with increasing water pressure and melt temperature, whereby stable channels are formed in the melt layer showing a very low flow resistance for steam. With UO 2 the formations of channels are also observed. However, these channels are not so stable that they eventually break apart and lead to the fragmentation of the UO 2 melt in drops. The fragmentation of the steel melt in water vessel is less than that of UO 2 . No essential solidification of the melt is observed in the respective duration of the simulations. However, a small drop in the melt temperature is observed. With a slight or no water pressure the melt flows from the upper vessel into the water vessel via the connecting hole. The processes take place in a very slow manner and with such a low steam production so that despite the occuring pressure peaks no sign of steam explosions could be observed. (orig./HP) [de

Chemical speciation of L-glutamine complexes with Co(II), Ni(II) and ...

African Journals Online (AJOL)

The trend in the variation of stability constants of the complexes with mole fraction of the surfactant is attributed to the compartmentalization of complexation equilibria. Distribution of species and effect of influential parameters on chemical speciation have also been presented. KEY WORDS: Chemical speciation, complex ...

Multielemental speciation analysis by advanced hyphenated technique - HPLC/ICP-MS: A review.

Science.gov (United States)

Marcinkowska, Monika; Barałkiewicz, Danuta

2016-12-01

Speciation analysis has become an invaluable tool in human health risk assessment, environmental monitoring or food quality control. Another step is to develop reliable multielemental speciation methodologies, to reduce costs, waste and time needed for the analysis. Separation and detection of species of several elements in a single analytical run can be accomplished by high performance liquid chromatography hyphenated to inductively coupled plasma mass spectrometry (HPLC/ICP-MS). Our review assembles articles concerning multielemental speciation determination of: As, Se, Cr, Sb, I, Br, Pb, Hg, V, Mo, Te, Tl, Cd and W in environmental, biological, food and clinical samples analyzed with HPLC/ICP-MS. It addresses the procedures in terms of following issues: sample collection and pretreatment, selection of optimal conditions for elements species separation by HPLC and determination using ICP-MS as well as metrological approach. The presented work is the first review article concerning multielemental speciation analysis by advanced hyphenated technique HPLC/ICP-MS. Copyright © 2016 Elsevier B.V. All rights reserved.

Status of determining transuranic nuclides speciation in aqueous solution with laser spectrometry

International Nuclear Information System (INIS)

Wang Bo; Liu Dejun; Yao Jun; Chen Xi; Long Haoqi; Zeng Jishu; Su Xiguang; Fan Xianhua

2007-01-01

The knowledge about speciation of transuranic nuclides in aqueous solution is a basis for understanding the chemical and migration behavior of transuranic nuclides in aqueous solution. The speciation of transuranic nuclides with trace concentration is complicated in near neutral aqueous solutions, including change of oxidation state, complexation and colloid generation, etc. The concentrations of transuranium in near neutral aqueous solution usually below the sensitivity range of method such as conventional absorption spectroscopy. The radioactive analysis method has a very low detection limits for radionuclides, however, it wouldn' t allow the direct measurement of the transuranic species. In contrast with these methods, laser spectroscopy is an ideal method with high sensitivity, and non-contact and non-destructive for determining the speciation of transuranic nuclides. This paper summarizes the status and application of LIPAS (Laser-induced Photoacoustic Spectrometry), LIBD (Laser-induced Breakdown Detection) and TRLFS (Time-resolved Laser Fluorescence Spectrometry) to determine the speciation of transuranic nuclides with trace concentration in aqueous solutions. (authors)

3D code for simulations of fluid flows

International Nuclear Information System (INIS)

Skandera, D.

2004-01-01

In this paper, a present status in the development of the new numerical code is reported. The code is considered for simulations of fluid flows. The finite volume approach is adopted for solving standard fluid equations. They are treated in a conservative form to ensure a correct conservation of fluid quantities. Thus, a nonlinear hyperbolic system of conservation laws is numerically solved. The code uses the Eulerian description of the fluid and is designed as a high order central numerical scheme. The central approach employs no (approximate) Riemann solver and is less computational expensive. The high order WENO strategy is adopted in the reconstruction step to achieve results comparable with more accurate Riemann solvers. A combination of the central approach with an iterative solving of a local Riemann problem is tested and behaviour of such numerical flux is reported. An extension to three dimensions is implemented using a dimension by dimension approach, hence, no complicated dimensional splitting need to be introduced. The code is fully parallelized with the MPI library. Several standard hydrodynamic tests in one, two and three dimensions were performed and their results are presented. (author)

U(IV) fluorescence spectroscopy. A new speciation tool

Energy Technology Data Exchange (ETDEWEB)

Lehmann, Susanne; Brendler, Vinzenz [Helmholtz-Zentrum Dresden-Rossendorf e.V., Dresden (Germany). Surface Processes; Steudtner, Robin [Helmholtz-Zentrum Dresden-Rossendorf e.V., Dresden (Germany). Inst. of Resource Ecology

2017-06-01

We combined absorption and fluorescence spectroscopy to study the speciation of U(IV) in solution in concentrations down to 10{sup -6} M uranium. With our time-resolved laser-induced fluorescence setup we could determine the fluorescence decay time of U(IV) in perchloric as well as in chloric acid with 2.6 ± 0.3 ns at room temperature and 148.4 ± 6.5 ns at liquid nitrogen temperature. For the U(IV) sulfate system, we observed a bathochromic shift and a peak shape modification in the fluorescence spectra with increasing sulfate concentration in solution. Thus, the potential of U(IV) fluorescence for speciation analysis could be proven.

LUCID - an optical design and raytrace code

International Nuclear Information System (INIS)

Nicholas, D.J.; Duffey, K.P.

1980-11-01

A 2D optical design and ray trace code is described. The code can operate either as a geometric optics propagation code or provide a scalar diffraction treatment. There are numerous non-standard options within the code including design and systems optimisation procedures. A number of illustrative problems relating to the design of optical components in the field of high power lasers is included. (author)

TRAC code development status and plans

International Nuclear Information System (INIS)

Spore, J.W.; Liles, D.R.; Nelson, R.A.

1986-01-01

This report summarizes the characteristics and current status of the TRAC-PF1/MOD1 computer code. Recent error corrections and user-convenience features are described, and several user enhancements are identified. Current plans for the release of the TRAC-PF1/MOD2 computer code and some preliminary MOD2 results are presented. This new version of the TRAC code implements stability-enhancing two-step numerics into the 3-D vessel, using partial vectorization to obtain a code that has run 400% faster than the MOD1 code

Chromosomal Speciation in the Genomics Era: Disentangling Phylogenetic Evolution of Rock-wallabies.

Science.gov (United States)

Potter, Sally; Bragg, Jason G; Blom, Mozes P K; Deakin, Janine E; Kirkpatrick, Mark; Eldridge, Mark D B; Moritz, Craig

2017-01-01

The association of chromosome rearrangements (CRs) with speciation is well established, and there is a long history of theory and evidence relating to "chromosomal speciation." Genomic sequencing has the potential to provide new insights into how reorganization of genome structure promotes divergence, and in model systems has demonstrated reduced gene flow in rearranged segments. However, there are limits to what we can understand from a small number of model systems, which each only tell us about one episode of chromosomal speciation. Progressing from patterns of association between chromosome (and genic) change, to understanding processes of speciation requires both comparative studies across diverse systems and integration of genome-scale sequence comparisons with other lines of evidence. Here, we showcase a promising example of chromosomal speciation in a non-model organism, the endemic Australian marsupial genus Petrogale . We present initial phylogenetic results from exon-capture that resolve a history of divergence associated with extensive and repeated CRs. Yet it remains challenging to disentangle gene tree heterogeneity caused by recent divergence and gene flow in this and other such recent radiations. We outline a way forward for better integration of comparative genomic sequence data with evidence from molecular cytogenetics, and analyses of shifts in the recombination landscape and potential disruption of meiotic segregation and epigenetic programming. In all likelihood, CRs impact multiple cellular processes and these effects need to be considered together, along with effects of genic divergence. Understanding the effects of CRs together with genic divergence will require development of more integrative theory and inference methods. Together, new data and analysis tools will combine to shed light on long standing questions of how chromosome and genic divergence promote speciation.

Current mass spectrometry strategies for selenium speciation in dietary sources of high-selenium

Energy Technology Data Exchange (ETDEWEB)

Infante, Heidi Goenaga; Hearn, Ruth; Catterick, Tim [LGC Limited, Teddington, Middlesex (United Kingdom)

2005-06-01

This document reviews the most relevant mass spectrometry approaches to selenium (Se) speciation in high-Se food supplements in terms of qualitative and quantitative Se speciation and Se-containing species identification, with special reference to high-Se yeast, garlic, onions and Brazil nuts. Important topics such as complexity of Se speciation in these materials and the importance of combining Se-specific detection and molecule-specific determination of the particular species of this element in parallel with chromatography, to understand their nutritional role and cancer preventive properties are critically discussed throughout. The versatility and potential of mass spectrometric detection in this field are clearly demonstrated. Although great advances have been achieved, further developments are required, especially if ''speciated''certified reference materials (CRMs) are to be produced for validation of measurements of target Se-containing species in Se-food supplements. (orig.)

Sandia National Laboratories analysis code data base

Science.gov (United States)

Peterson, C. W.

1994-11-01

Sandia National Laboratories' mission is to solve important problems in the areas of national defense, energy security, environmental integrity, and industrial technology. The laboratories' strategy for accomplishing this mission is to conduct research to provide an understanding of the important physical phenomena underlying any problem, and then to construct validated computational models of the phenomena which can be used as tools to solve the problem. In the course of implementing this strategy, Sandia's technical staff has produced a wide variety of numerical problem-solving tools which they use regularly in the design, analysis, performance prediction, and optimization of Sandia components, systems, and manufacturing processes. This report provides the relevant technical and accessibility data on the numerical codes used at Sandia, including information on the technical competency or capability area that each code addresses, code 'ownership' and release status, and references describing the physical models and numerical implementation.

Sandia National Laboratories analysis code data base

Energy Technology Data Exchange (ETDEWEB)

Peterson, C.W.

1994-11-01

Sandia National Laboratories, mission is to solve important problems in the areas of national defense, energy security, environmental integrity, and industrial technology. The Laboratories` strategy for accomplishing this mission is to conduct research to provide an understanding of the important physical phenomena underlying any problem, and then to construct validated computational models of the phenomena which can be used as tools to solve the problem. In the course of implementing this strategy, Sandia`s technical staff has produced a wide variety of numerical problem-solving tools which they use regularly in the design, analysis, performance prediction, and optimization of Sandia components, systems and manufacturing processes. This report provides the relevant technical and accessibility data on the numerical codes used at Sandia, including information on the technical competency or capability area that each code addresses, code ``ownership`` and release status, and references describing the physical models and numerical implementation.

Characteristic evolutions in numerical relativity using six angular patches

International Nuclear Information System (INIS)

Reisswig, Christian; Bishop, Nigel T; Lai, Chi Wai; Thornburg, Jonathan; Szilagyi, Bela

2007-01-01

The characteristic approach to numerical relativity is a useful tool in evolving gravitational systems. In the past this has been implemented using two patches of stereographic angular coordinates. In other applications, a six-patch angular coordinate system has proved effective. Here we investigate the use of a six-patch system in characteristic numerical relativity, by comparing an existing two-patch implementation (using second-order finite differencing throughout) with a new six-patch implementation (using either second- or fourth-order finite differencing for the angular derivatives). We compare these different codes by monitoring the Einstein constraint equations, numerically evaluated independently from the evolution. We find that, compared to the (second-order) two-patch code at equivalent resolutions, the errors of the second-order six-patch code are smaller by a factor of about 2, and the errors of the fourth-order six-patch code are smaller by a factor of nearly 50

Characteristic evolutions in numerical relativity using six angular patches

Energy Technology Data Exchange (ETDEWEB)

Reisswig, Christian [Max-Planck-Institut fuer Gravitationsphysik, Albert-Einstein-Institut, Am Muehlenberg 1, D-14476 Golm (Germany); Bishop, Nigel T [Department of Mathematical Sciences, University of South Africa, PO Box 392, Unisa 0003, South Africa (South Africa); Lai, Chi Wai [Department of Mathematical Sciences, University of South Africa, PO Box 392, Unisa 0003, South Africa (South Africa); Thornburg, Jonathan [Max-Planck-Institut fuer Gravitationsphysik, Albert-Einstein-Institut, Am Muehlenberg 1, D-14476 Golm (Germany); Szilagyi, Bela [Max-Planck-Institut fuer Gravitationsphysik, Albert-Einstein-Institut, Am Muehlenberg 1, D-14476 Golm (Germany)

2007-06-21

The characteristic approach to numerical relativity is a useful tool in evolving gravitational systems. In the past this has been implemented using two patches of stereographic angular coordinates. In other applications, a six-patch angular coordinate system has proved effective. Here we investigate the use of a six-patch system in characteristic numerical relativity, by comparing an existing two-patch implementation (using second-order finite differencing throughout) with a new six-patch implementation (using either second- or fourth-order finite differencing for the angular derivatives). We compare these different codes by monitoring the Einstein constraint equations, numerically evaluated independently from the evolution. We find that, compared to the (second-order) two-patch code at equivalent resolutions, the errors of the second-order six-patch code are smaller by a factor of about 2, and the errors of the fourth-order six-patch code are smaller by a factor of nearly 50.

Reactor Thermal Hydraulic Numerical Calculation And Modeling

International Nuclear Information System (INIS)

Duong Ngoc Hai; Dang The Ba

2008-01-01

In the paper the results of analysis of thermal hydraulic state models using the numerical codes such as COOLOD, EUREKA and RELAP5 for simulation of the reactor thermal hydraulic states are presented. The calculations, analyses of reactor thermal hydraulic state and safety were implemented using different codes. The received numerical results, which were compared each to other, to experiment measurement of Dalat (Vietnam) research reactor and published results, show their appropriateness and capacity for analyses of different appropriate cases. (author)

Metal accumulation by stream bryophytes, related to chemical speciation

Energy Technology Data Exchange (ETDEWEB)

Tipping, E. [Centre for Ecology and Hydrology, Lancaster Environment Centre, Library Avenue, Bailrigg, Lancaster LA1 4AP (United Kingdom)], E-mail: et@ceh.ac.uk; Vincent, C.D.; Lawlor, A.J.; Lofts, S. [Centre for Ecology and Hydrology, Lancaster Environment Centre, Library Avenue, Bailrigg, Lancaster LA1 4AP (United Kingdom)

2008-12-15

Metal accumulation by aquatic bryophytes was investigated using data for headwater streams of differing chemistry. The Windermere Humic Aqueous Model (WHAM) was applied to calculate chemical speciation, including competitive proton and metal interactions with external binding sites on the plants. The speciation modelling approach gives smaller deviations between observed and predicted bryophyte contents of Cu, Zn, Cd and Pb than regressions based on total filtered metal concentrations. If all four metals, and Ni, are considered together, the WHAM predictions are superior at the 1% level. Optimised constants for bryophyte binding by the trace metals are similar to those for humic substances and simple carboxylate ligands. Bryophyte contents of Na, Mg and Ca are approximately explained by binding at external sites, while most of the K is intracellular. Oxide phases account for some of the Al, and most of the Mn, Fe and Co. - Speciation modelling can be used to interpret the accumulation of Ni, Cu, Zn, Cd and Pb by bryophytes, supporting its use to quantify trace metal bioavailability in the field.

Advanced Numerical and Theoretical Methods for Photonic Crystals and Metamaterials

Science.gov (United States)

Felbacq, Didier

2016-11-01

This book provides a set of theoretical and numerical tools useful for the study of wave propagation in metamaterials and photonic crystals. While concentrating on electromagnetic waves, most of the material can be used for acoustic (or quantum) waves. For each presented numerical method, numerical code written in MATLAB® is presented. The codes are limited to 2D problems and can be easily translated in Python or Scilab, and used directly with Octave as well.

Influence of natural organic matter on the speciation of radionuclides in a geochemistry context

International Nuclear Information System (INIS)

Marang, L.

2007-09-01

The principal aim of this work is the study of the influence of natural organic matter, in particularly humic substances (HS), on the speciation of radionuclides (RN). The studied radionuclides are cobalt (II), europium (III) and uranium (VI). It has been shown that mobility and bioavailability of a metal are related to its speciation. The NICA-Donnan model describes metal ion binding to NOM: it accounts for NOM chemical heterogeneity, competition during binding and ionic strength effects. However the model has been calibrated with a limited number of experimental data for the RN. Indeed there is only a few speciation technique available for the study of the interactions RN-HS. Within the framework of this study, we have developed and optimised speciation technique (Flux Donnan Membrane Technique and the use of an un-solubilized humic acid) in order to acquire new experimental data, we have also studied the effect of the competition on RN speciation and finally we have tested the model capacity to predict the RN behavior in laboratory or in situ. (author)

Influence of natural organic matter on the speciation of radionuclides in a geochemistry context

International Nuclear Information System (INIS)

Marang, L.

2007-09-01

The principal aim of this work is the study of the influence of natural organic matter, in particularly humic substances (HS), on the speciation of radionuclides (RN). The studied radionuclides are cobalt (II), europium (III) and uranium (VI). It has been shown that mobility and bioavailability of a metal are related to its speciation. The NICA-Donnan model describes metal ion binding to NOM: it accounts for NOM chemical heterogeneity, competition during binding and ionic strength effects. However the model has been calibrated with a limited number of experimental data for the RN. Indeed there is only a few speciation techniques available for the study of the interactions RN-HS. Within the framework of this study, we have developed and optimised speciation technique (Flux Donnan Membrane Technique and the use of an insolubilized humic acid) in order to acquire new experimental data, we have also studied the effect of the competition on RN speciation and finally we have tested the model capacity to predict the RN behavior in laboratory or in situ. (author)

ETR/ITER systems code

Energy Technology Data Exchange (ETDEWEB)

Barr, W.L.; Bathke, C.G.; Brooks, J.N.; Bulmer, R.H.; Busigin, A.; DuBois, P.F.; Fenstermacher, M.E.; Fink, J.; Finn, P.A.; Galambos, J.D.; Gohar, Y.; Gorker, G.E.; Haines, J.R.; Hassanein, A.M.; Hicks, D.R.; Ho, S.K.; Kalsi, S.S.; Kalyanam, K.M.; Kerns, J.A.; Lee, J.D.; Miller, J.R.; Miller, R.L.; Myall, J.O.; Peng, Y-K.M.; Perkins, L.J.; Spampinato, P.T.; Strickler, D.J.; Thomson, S.L.; Wagner, C.E.; Willms, R.S.; Reid, R.L. (ed.)

1988-04-01

A tokamak systems code capable of modeling experimental test reactors has been developed and is described in this document. The code, named TETRA (for Tokamak Engineering Test Reactor Analysis), consists of a series of modules, each describing a tokamak system or component, controlled by an optimizer/driver. This code development was a national effort in that the modules were contributed by members of the fusion community and integrated into a code by the Fusion Engineering Design Center. The code has been checked out on the Cray computers at the National Magnetic Fusion Energy Computing Center and has satisfactorily simulated the Tokamak Ignition/Burn Experimental Reactor II (TIBER) design. A feature of this code is the ability to perform optimization studies through the use of a numerical software package, which iterates prescribed variables to satisfy a set of prescribed equations or constraints. This code will be used to perform sensitivity studies for the proposed International Thermonuclear Experimental Reactor (ITER). 22 figs., 29 tabs.

ETR/ITER systems code

International Nuclear Information System (INIS)

Barr, W.L.; Bathke, C.G.; Brooks, J.N.

1988-04-01

A tokamak systems code capable of modeling experimental test reactors has been developed and is described in this document. The code, named TETRA (for Tokamak Engineering Test Reactor Analysis), consists of a series of modules, each describing a tokamak system or component, controlled by an optimizer/driver. This code development was a national effort in that the modules were contributed by members of the fusion community and integrated into a code by the Fusion Engineering Design Center. The code has been checked out on the Cray computers at the National Magnetic Fusion Energy Computing Center and has satisfactorily simulated the Tokamak Ignition/Burn Experimental Reactor II (TIBER) design. A feature of this code is the ability to perform optimization studies through the use of a numerical software package, which iterates prescribed variables to satisfy a set of prescribed equations or constraints. This code will be used to perform sensitivity studies for the proposed International Thermonuclear Experimental Reactor (ITER). 22 figs., 29 tabs

Mimetic Divergence and the Speciation Continuum in the Mimic Poison Frog Ranitomeya imitator

DEFF Research Database (Denmark)

Twomey, Evan; Vestergaard, Jacob Schack; Venegas, Pablo J.

2016-01-01

While divergent ecological adaptation can drive speciation, understanding the factors that facilitate or constrain this process remains a major goal in speciation research. Here, we study two mimetic transition zones in the poison frog Ranitomeya imitator, a species that has undergone a Mullerian...

Hybridization masks speciation in the evolutionary history of the Galápagos marine iguana.

Science.gov (United States)

MacLeod, Amy; Rodríguez, Ariel; Vences, Miguel; Orozco-terWengel, Pablo; García, Carolina; Trillmich, Fritz; Gentile, Gabriele; Caccone, Adalgisa; Quezada, Galo; Steinfartz, Sebastian

2015-06-22

The effects of the direct interaction between hybridization and speciation-two major contrasting evolutionary processes--are poorly understood. We present here the evolutionary history of the Galápagos marine iguana (Amblyrhynchus cristatus) and reveal a case of incipient within--island speciation, which is paralleled by between-island hybridization. In-depth genome-wide analyses suggest that Amblyrhynchus diverged from its sister group, the Galápagos land iguanas, around 4.5 million years ago (Ma), but divergence among extant populations is exceedingly young (less than 50,000 years). Despite Amblyrhynchus appearing as a single long-branch species phylogenetically, we find strong population structure between islands, and one case of incipient speciation of sister lineages within the same island--ostensibly initiated by volcanic events. Hybridization between both lineages is exceedingly rare, yet frequent hybridization with migrants from nearby islands is evident. The contemporary snapshot provided by highly variable markers indicates that speciation events may have occurred throughout the evolutionary history of marine iguanas, though these events are not visible in the deeper phylogenetic trees. We hypothesize that the observed interplay of speciation and hybridization might be a mechanism by which local adaptations, generated by incipient speciation, can be absorbed into a common gene pool, thereby enhancing the evolutionary potential of the species as a whole. © 2015 The Author(s) Published by the Royal Society. All rights reserved.

Speciation of Fe in ambient aerosol and cloudwater

Energy Technology Data Exchange (ETDEWEB)

Siefert, Ronald Lyn [California Inst. of Technology (CalTech), Pasadena, CA (United States)

1996-08-15

Atmospheric iron (Fe) is thought to play an important role in cloudwater chemistry (e.g., S(IV) oxidation, oxidant production, etc.), and is also an important source of Fe to certain regions of the worlds oceans where Fe is believed to be a rate-limiting nutrient for primary productivity. This thesis focuses on understanding the chemistry, speciation and abundance of Fe in cloudwater and aerosol in the troposphere, through observations of Fe speciation in the cloudwater and aerosol samples collected over the continental United States and the Arabian Sea. Different chemical species of atmospheric Fe were measured in aerosol and cloudwater samples to help assess the role of Fe in cloudwater chemistry.

FLASH: A finite element computer code for variably saturated flow

International Nuclear Information System (INIS)

Baca, R.G.; Magnuson, S.O.

1992-05-01

A numerical model was developed for use in performance assessment studies at the INEL. The numerical model, referred to as the FLASH computer code, is designed to simulate two-dimensional fluid flow in fractured-porous media. The code is specifically designed to model variably saturated flow in an arid site vadose zone and saturated flow in an unconfined aquifer. In addition, the code also has the capability to simulate heat conduction in the vadose zone. This report presents the following: description of the conceptual frame-work and mathematical theory; derivations of the finite element techniques and algorithms; computational examples that illustrate the capability of the code; and input instructions for the general use of the code. The FLASH computer code is aimed at providing environmental scientists at the INEL with a predictive tool for the subsurface water pathway. This numerical model is expected to be widely used in performance assessments for: (1) the Remedial Investigation/Feasibility Study process and (2) compliance studies required by the US Department of Energy Order 5820.2A

A multi-technique investigation of copper and zinc distribution, speciation and potential bioavailability in biosolids

International Nuclear Information System (INIS)

Donner, E.; Ryan, C.G.; Howard, D.L.; Zarcinas, B.; Scheckel, K.G.; McGrath, S.P.; Jonge, M.D. de; Paterson, D.; Naidu, R.; Lombi, E.

2012-01-01

The use of biosolids in agriculture continues to be debated, largely in relation to their metal contents. Our knowledge regarding the speciation and bioavailability of biosolids metals is still far from complete. In this study, a multi-technique approach was used to investigate copper and zinc speciation and partitioning in one contemporary and two historical biosolids used extensively in previous research and field trials. Using wet chemistry and synchrotron spectroscopy techniques it was shown that copper/zinc speciation in the biosolids was largely equivalent despite the biosolids being derived from different countries over a 50 year period. Furthermore, copper speciation was consistently dominated by sorption to organic matter whereas Zn partitioned mainly to iron oxides. These data suggest that the results of historical field trials are still relevant for modern biosolids and that further risk assessment studies should concentrate particularly on Cu as this metal is associated with the mineralisable biosolids fraction. - Highlights: ► Complementary techniques were used to investigate Cu and Zn speciation in biosolids. ► Historic and contemporary biosolids with differing metal contents were examined. ► Similarities in Cu/Zn speciation were observed irrespective of biosolids provenance. ► Key binding environments identified were organic matter for Cu and Fe oxides for Zn. ► Similarities show historic field trial results are still relevant for biosolids management. - Historic and contemporary biosolids show similarities in Cu/Zn speciation despite having very different total Zn/Cu contents.

Detecting Hidden Diversification Shifts in Models of Trait-Dependent Speciation and Extinction.

Science.gov (United States)

Beaulieu, Jeremy M; O'Meara, Brian C

2016-07-01

The distribution of diversity can vary considerably from clade to clade. Attempts to understand these patterns often employ state-dependent speciation and extinction models to determine whether the evolution of a particular novel trait has increased speciation rates and/or decreased extinction rates. It is still unclear, however, whether these models are uncovering important drivers of diversification, or whether they are simply pointing to more complex patterns involving many unmeasured and co-distributed factors. Here we describe an extension to the popular state-dependent speciation and extinction models that specifically accounts for the presence of unmeasured factors that could impact diversification rates estimated for the states of any observed trait, addressing at least one major criticism of BiSSE (Binary State Speciation and Extinction) methods. Specifically, our model, which we refer to as HiSSE (Hidden State Speciation and Extinction), assumes that related to each observed state in the model are "hidden" states that exhibit potentially distinct diversification dynamics and transition rates than the observed states in isolation. We also demonstrate how our model can be used as character-independent diversification models that allow for a complex diversification process that is independent of the evolution of a character. Under rigorous simulation tests and when applied to empirical data, we find that HiSSE performs reasonably well, and can at least detect net diversification rate differences between observed and hidden states and detect when diversification rate differences do not correlate with the observed states. We discuss the remaining issues with state-dependent speciation and extinction models in general, and the important ways in which HiSSE provides a more nuanced understanding of trait-dependent diversification. © The Author(s) 2016. Published by Oxford University Press, on behalf of the Society of Systematic Biologists. All rights reserved

Liquid phase microextraction for the analysis of trace elements and their speciation

International Nuclear Information System (INIS)

Hu, Bin; He, Man; Chen, Beibei; Xia, Linbo

2013-01-01

Trace/ultra-trace elements and their speciation analysis in complex matrices usually require sample preparation procedures to achieve sample clean-up and analyte preconcentration. Sample preparation is often the bottleneck in trace elements and their speciation analysis which has a direct impact on accuracy, precision and limits of detection and is often the rate-determining step of the analytical process. Recent trends in sample preparation include miniaturization, automation, high-throughput performance and reduction in solvent/sample consumption and operation time. Liquid-phase microextraction (LPME) technique as a novel and promising alternative in sample preparation can meet these requirements and has become a very efficient sample preparation technique. This review updates the state of art of LPME for trace elements and their speciation analysis and discusses its promising prospects. The major thrust of the article highlights the applications of LPME including single-drop microextraction (SDME), hollow fiber-liquid phase microextraction (HF-LPME), dispersive liquid liquid microextraction (DLLME) and solidified floating organic drop microextraction (SFODME) to the fields of elemental and their speciation analysis by atomic spectrometry-based methods, especially inductively coupled plasma mass spectrometry. General and specific concepts, different extraction formats and characteristics of LPME are described and compared, along with examples of recent innovations and applications presented to demonstrate its potential for trace elements and their speciation analysis in biological and environmental fields. Moreover, the application potential and an outlook on the combination of LPME and atomic spectrometry-based techniques for inorganic analysis are commentated. - Highlights: • The state of art of LPME for trace elements and their speciation analysis is updated. • Different extraction formats of LPME are described. • The application potential and future

PEAR code review

International Nuclear Information System (INIS)

De Wit, R.; Jamieson, T.; Lord, M.; Lafortune, J.F.

1997-07-01

As a necessary component in the continuous improvement and refinement of methodologies employed in the nuclear industry, regulatory agencies need to periodically evaluate these processes to improve confidence in results and ensure appropriate levels of safety are being achieved. The independent and objective review of industry-standard computer codes forms an essential part of this program. To this end, this work undertakes an in-depth review of the computer code PEAR (Public Exposures from Accidental Releases), developed by Atomic Energy of Canada Limited (AECL) to assess accidental releases from CANDU reactors. PEAR is based largely on the models contained in the Canadian Standards Association (CSA) N288.2-M91. This report presents the results of a detailed technical review of the PEAR code to identify any variations from the CSA standard and other supporting documentation, verify the source code, assess the quality of numerical models and results, and identify general strengths and weaknesses of the code. The version of the code employed in this review is the one which AECL intends to use for CANDU 9 safety analyses. (author)

Development of fast ignition integrated interconnecting code (FI3) for fast ignition scheme

International Nuclear Information System (INIS)

Nagatomo, H.; Johzaki, T.; Mima, K.; Sunahara, A.; Nishihara, K.; Izawa, Y.; Sakagami, H.; Nakao, Y.; Yokota, T.; Taguchi, T.

2005-01-01

The numerical simulation plays an important role in estimating the feasibility and performance of the fast ignition. There are two key issues in numerical analysis for the fast ignition. One is the controlling the implosion dynamics to form a high density core plasma in non-spherical implosion, and the other is heating core plasma efficiency by the short pulse high intense laser. From initial laser irradiation to final fusion burning, all the physics are coupling strongly in any phase, and they must be solved consistently in computational simulation. However, in general, it is impossible to simulate laser plasma interaction and radiation hydrodynamics in a single computational code, without any numerical dissipation, special assumption or conditional treatment. Recently, we have developed 'Fast Ignition Integrated Interconnecting code' (FI 3 ) which consists of collective Particle-in-Cell code, Relativistic Fokker-Planck hydro code, and 2-dimensional radiation hydrodynamics code. And those codes are connecting with each other in data-flow bases. In this paper, we will present detail feature of the FI 3 code, and numerical results of whole process of fast ignition. (author)

The EU network on trace element speciation in full swing

DEFF Research Database (Denmark)

Cornelis, R.; Camara, C.; Ebdon, L.

2000-01-01

health and hygiene. The network covers a number of important issues including organotin compounds, chromium and nickel species, chemical characterisation of environmental and industrial particulate samples, risk assessment, selenium and a series of other essential and toxic elements in food, as well......The EC-funded thematic network 'Speciation 21' links scientists in analytical chemistry working in method development for the chemical speciation of trace elements, and potential users from industry and representatives of legislative agencies, in the field of environment, food and occupational...

Aerosol Chemical Speciation Monitor (ACSM) Instrument Handbook

Energy Technology Data Exchange (ETDEWEB)

Watson, Thomas B. [Brookhaven National Lab. (BNL), Upton, NY (United States)

2017-08-15

The Aerodyne Aerosol Chemical Speciation Monitor (ACSM) measures particle mass loading and chemical composition in real time for non-refractory sub-micron aerosol particles. The ACSM is designed for long-term unattended deployment and routine monitoring applications.

Visualization of Instrumental Verification Information Details (VIVID) : code development, description, and usage.

Energy Technology Data Exchange (ETDEWEB)

Roy, Christopher John; Bainbridge, Bruce L.; Potter, Donald L.; Blottner, Frederick G.; Black, Amalia Rebecca

2005-03-01

The formulation, implementation and usage of a numerical solution verification code is described. This code uses the Richardson extrapolation procedure to estimate the order of accuracy and error of a computational program solution. It evaluates multiple solutions performed in numerical grid convergence studies to verify a numerical algorithm implementation. Analyses are performed on both structured and unstructured grid codes. Finite volume and finite element discretization programs are examined. Two and three-dimensional solutions are evaluated. Steady state and transient solution analysis capabilities are present in the verification code. Multiple input data bases are accepted. Benchmark options are included to allow for minimal solution validation capability as well as verification.

NUMERICAL MULTIGROUP TRANSIENT ANALYSIS OF SLAB NUCLEAR REACTOR WITH THERMAL FEEDBACK

Directory of Open Access Journals (Sweden)

Filip Osuský

2016-12-01

Full Text Available The paper describes a new numerical code for multigroup transient analyses with thermal feedback. The code is developed at Institute of Nuclear and Physical Engineering. It is necessary to carefully investigate transient states of fast neutron reactors, due to recriticality issues after accident scenarios. The code solves numerical diffusion equation for 1D problem with possible neutron source incorporation. Crank-Nicholson numerical method is used for the transient states. The investigated cases are describing behavior of PWR fuel assembly inside of spent fuel pool and with the incorporated neutron source for better illustration of thermal feedback.

Review of speciation and solubility of radionuclides in the near and far field. Pt. 2

International Nuclear Information System (INIS)

Smith-Briggs, J.L.

1992-01-01

This report represents Part 2 in a series of three reports which review the speciation and solubility of radionuclides in the near and far field. Part 2 is a general bibliography from 1978 to 1991. This report contains the bibliography for the review of speciation and solubility radionuclides in the near and far field from 1978 to 1991. The importance of the solubility and speciation of radionuclides in relation to the safety assessment of the repository is discussed. Solubility is defined, both theoretically and pragmatically, and the factors which influence solubility and speciation are discussed. The literature search was performed using the INIS database. The UKAEA RECAP database, the NIREX report bibliography and a list of DOE reports provided by the DOE were also used. The bibliography is divided into five sections, solubility and speciation experimental data, basic thermodynamic data, solubility limiting solid phases, experimental design and review and overview articles. Some references appear in more than one section. (Author)

The property investigation of the numerical code TIGER for the uncertain analysis

International Nuclear Information System (INIS)

Ebina, Takanori; Ohi, Takao

2008-03-01

In order to obtain the information concerning the safety of the geological disposal under various geological environments, the sensitivity analysis that considers the uncertainty of parameters resulting from the insufficiency of knowledge and information plays an important role. The numerical code TIGER allows the physical and chemical properties within the system to vary with time in the radionuclide migration analysis from vitrified glass to rock and these function is useful for understanding the effect of the property change of each barrier in such sensitivity analysis. Therefore, at this study, some typical processing methods with the engineered barrier system and the host rock were developed at fast, and through the comparison with the calculation time, the step of preprocessing and postprocessing, the most suitable method was considered. After this consideration, the interrelation between the calculation accuracy and the calculation time at the most suitable method was examined for the purpose of using this method to the uncertain analysis. In addition, the STRIDER that was the program to make the input file for the uncertain analysis with setting random parameter and do the preprocessing and the postprocessing, was improved for the uncertain analysis. Through this consideration, the information of the best processing method, the calculation accuracy, and the analysis tool was arranged for an uncertain analysis using TIGER. (author)

Study of solution speciation, soil retention and soil-plant transfer of zirconium; Etude de la speciation en solution, de la retention dans les sols et du transfert sol-plante du zirconium

Energy Technology Data Exchange (ETDEWEB)

Ferrand, E

2005-12-15

Within the framework of the risks prevention policy of Andra, the radioactive zirconium introduction ({sup 93}Zr and {sup 95}Zr) into the environment could be carried out starting from the nuclear waste whose storage is envisaged in deep geological layers. Thus, the goal of this study was to evaluate the parameters and phenomena influencing speciation (various chemical forms) and the soil-plant transfer of zirconium. Experiments of adsorption/desorption of zirconium with different ligands likely to be present in soils (goethite and humic acid) and with two soils, with contrasted characteristics, close to the underground research laboratory of Andra (Meuse) were carried out. These results of adsorption were then confronted with those obtained by the MUSIC and NICA-DONNAN models carried out using the computer code ECOSAT. Zr presents a strong affinity for the two types of soils and the soils constituents. Specific interactions of internal sphere type with the goethite were highlighted using the model. Soil-solution partition coefficients, or K{sub d}, values increase with pH and contact time. Various types of edible plants, pea (Pisum sativum L.) and tomato (Lycopersicon esculentum L cv. St Pierre) were cultivated in hydroponic conditions and in soils spiked with various sources of Zirconium. The maximum zirconium contents are mainly measured in the roots of the plants. The soil-plant transfer factors measured during these experiments show a weak bioavailability of zirconium. An influence of speciation on Zr bioavailability is however highlighted. Some chemical forms, such as oxychloride or acetate, are more easily mobilized than others by the plant. (author)

Early events in speciation: Cryptic species of Drosophila aldrichi.

Science.gov (United States)

Castro Vargas, Cynthia; Richmond, Maxi Polihronakis; Ramirez Loustalot Laclette, Mariana; Markow, Therese Ann

2017-06-01

Understanding the earliest events in speciation remains a major challenge in evolutionary biology. Thus identifying species whose populations are beginning to diverge can provide useful systems to study the process of speciation. Drosophila aldrichi , a cactophilic fruit fly species with a broad distribution in North America, has long been assumed to be a single species owing to its morphological uniformity. While previous reports either of genetic divergence or reproductive isolation among different D. aldrichi strains have hinted at the existence of cryptic species, the evolutionary relationships of this species across its range have not been thoroughly investigated. Here we show that D. aldrichi actually is paraphyletic with respect to its closest relative, Drosophila wheeleri , and that divergent D. aldrichi lineages show complete hybrid male sterility when crossed. Our data support the interpretation that there are at least two species of D. aldrichi, making these flies particularly attractive for studies of speciation in an ecological and geographical context.

Benchmarking NNWSI flow and transport codes: COVE 1 results

International Nuclear Information System (INIS)

Hayden, N.K.

1985-06-01

The code verification (COVE) activity of the Nevada Nuclear Waste Storage Investigations (NNWSI) Project is the first step in certification of flow and transport codes used for NNWSI performance assessments of a geologic repository for disposing of high-level radioactive wastes. The goals of the COVE activity are (1) to demonstrate and compare the numerical accuracy and sensitivity of certain codes, (2) to identify and resolve problems in running typical NNWSI performance assessment calculations, and (3) to evaluate computer requirements for running the codes. This report describes the work done for COVE 1, the first step in benchmarking some of the codes. Isothermal calculations for the COVE 1 benchmarking have been completed using the hydrologic flow codes SAGUARO, TRUST, and GWVIP; the radionuclide transport codes FEMTRAN and TRUMP; and the coupled flow and transport code TRACR3D. This report presents the results of three cases of the benchmarking problem solved for COVE 1, a comparison of the results, questions raised regarding sensitivities to modeling techniques, and conclusions drawn regarding the status and numerical sensitivities of the codes. 30 refs

Development of the computer code system for the analyses of PWR core

International Nuclear Information System (INIS)

Tsujimoto, Iwao; Naito, Yoshitaka.

1992-11-01

This report is one of the materials for the work titled 'Development of the computer code system for the analyses of PWR core phenomena', which is performed under contracts between Shikoku Electric Power Company and JAERI. In this report, the numerical method adopted in our computer code system are described, that is, 'The basic course and the summary of the analysing method', 'Numerical method for solving the Boltzmann equation', 'Numerical method for solving the thermo-hydraulic equations' and 'Description on the computer code system'. (author)

Migration modelling of different plutonium chemical forms through porous media

International Nuclear Information System (INIS)

Saltelli, A.

1979-01-01

Two solutions of the migration equations are described. The first relates to the transport equations for the decay chain Am 243→Pu 239→U 235. Numerical integration was performed in this case by a simulation code written in CSMP III language and plutonium is considered to be all in the same chemical form. The second case relates to the problem of Pu speciation and migration. The decay chain Pu 240→U 236 is considered and numerical integration is performed by a modified version of Bo code COLUMN. Pseudo first order reactions are supposed to act between Pu states to maintain equilibrium during the migration

Numerical analysis of the performance prediction for a thermoelectric generator

Energy Technology Data Exchange (ETDEWEB)

Kim, Chang Nyung [Kyung Hee University, Yongin (Korea, Republic of)

2015-09-15

The present study develops a two-dimensional numerical code that can predict the performance of a thermoelectric generator module including a p-leg/n-leg pair and top and bottom electrodes. The present code can simulate the detailed thermoelectric phenomena including the heat flow, electric current, Joule heating, Peltier heating, and Thomson heating, together with the efficiency of the modules whose properties depend on the temperature. The present numerical code can be used for the design optimization of a thermoelectric power generator.

Detecting non-coding selective pressure in coding regions

Directory of Open Access Journals (Sweden)

Blanchette Mathieu

2007-02-01

Full Text Available Abstract Background Comparative genomics approaches, where orthologous DNA regions are compared and inter-species conserved regions are identified, have proven extremely powerful for identifying non-coding regulatory regions located in intergenic or intronic regions. However, non-coding functional elements can also be located within coding region, as is common for exonic splicing enhancers, some transcription factor binding sites, and RNA secondary structure elements affecting mRNA stability, localization, or translation. Since these functional elements are located in regions that are themselves highly conserved because they are coding for a protein, they generally escaped detection by comparative genomics approaches. Results We introduce a comparative genomics approach for detecting non-coding functional elements located within coding regions. Codon evolution is modeled as a mixture of codon substitution models, where each component of the mixture describes the evolution of codons under a specific type of coding selective pressure. We show how to compute the posterior distribution of the entropy and parsimony scores under this null model of codon evolution. The method is applied to a set of growth hormone 1 orthologous mRNA sequences and a known exonic splicing elements is detected. The analysis of a set of CORTBP2 orthologous genes reveals a region of several hundred base pairs under strong non-coding selective pressure whose function remains unknown. Conclusion Non-coding functional elements, in particular those involved in post-transcriptional regulation, are likely to be much more prevalent than is currently known. With the numerous genome sequencing projects underway, comparative genomics approaches like that proposed here are likely to become increasingly powerful at detecting such elements.

Neural Decoder for Topological Codes

Science.gov (United States)

Torlai, Giacomo; Melko, Roger G.

2017-07-01

We present an algorithm for error correction in topological codes that exploits modern machine learning techniques. Our decoder is constructed from a stochastic neural network called a Boltzmann machine, of the type extensively used in deep learning. We provide a general prescription for the training of the network and a decoding strategy that is applicable to a wide variety of stabilizer codes with very little specialization. We demonstrate the neural decoder numerically on the well-known two-dimensional toric code with phase-flip errors.

Iron solubility driven by speciation in dust sources to the ocean

Science.gov (United States)

Schroth, A.W.; Crusius, John; Sholkovitz, E.R.; Bostick, B.C.

2009-01-01

Although abundant in the Earths crust, iron is present at trace concentrations in sea water and is a limiting nutrient for phytoplankton in approximately 40% of the ocean. Current literature suggests that aerosols are the primary external source of iron to offshore waters, yet controls on iron aerosol solubility remain unclear. Here we demonstrate that iron speciation (oxidation state and bonding environment) drives iron solubility in arid region soils, glacial weathering products (flour) and oil combustion products (oil fly ash). Iron speciation varies by aerosol source, with soils in arid regions dominated by ferric (oxy)hydroxides, glacial flour by primary and secondary ferrous silicates and oil fly ash by ferric sulphate salts. Variation in iron speciation produces systematic differences in iron solubility: less than 1% of the iron in arid soils was soluble, compared with 2-3% in glacial products and 77-81% in oil combustion products, which is directly linked to fractions of more soluble phases. We conclude that spatial and temporal variations in aerosol iron speciation, driven by the distribution of deserts, glaciers and fossil-fuel combustion, could have a pronounced effect on aerosol iron solubility and therefore on biological productivity and the carbon cycle in the ocean. ?? 2009 Macmillan Publishers Limited.

Assessment of solubility and speciation of U, Pu, Np, and Th in natural groundwaters: theory, thermodynamic data, and primary applications

Energy Technology Data Exchange (ETDEWEB)

Schweingruber, M

1981-11-01

The computer code MINEQL was adapted and extended to assess the solubility and speciation of radioactive waste nuclides in groundwaters under conditions which are expected to exist in the surroundings of planned underground repositories. By means of an additional data base including standard reaction enthalpies and heat capacities at 25/sup 0/C, the relevant equilibrium constants at 25/sup 0/C can be converted to other temperatures using Ulich's formulae. The activitiy coefficients for dissolved species are modelled with a temperature dependent function of the Davies' approximation type. The report is segmented in three main parts: (1) a review of the MINEQL fundamentals and a summary of the theory needed for the extensions; (2) an outline of the general program structure and of criteria applied to the selection of thermodynamic data; (3) a discussion of the results from first model applications to evaluate the solubility and speciation of U, Pu, Np and Th in two Swiss groundwaters, based either on the approach of negligible chemical disturbance or on a solid/solution titration concept. All thermodynamic data involved in this study are collected in an appendix, together with a compilation of references.

Magic cues versus magic preferences in speciation

NARCIS (Netherlands)

Maan, Martine E.; Seehausen, Ole

Question: How does divergent natural selection lead to divergence in mating traits and the evolution of reproductive isolation? Background: Ecological speciation of non-allopatric taxa usually requires the evolution of an association between selective mating and the traits underlying ecological

Biosensor for metal analysis and speciation

Science.gov (United States)

Aiken, Abigail M.; Peyton, Brent M.; Apel, William A.; Petersen, James N.

2007-01-30

A biosensor for metal analysis and speciation is disclosed. The biosensor comprises an electron carrier immobilized to a surface of an electrode and a layer of an immobilized enzyme adjacent to the electrode. The immobilized enzyme comprises an enzyme having biological activity inhibited by a metal to be detected by the biosensor.

Adaptive divergence with gene flow in incipient speciation of Miscanthus floridulus / sinensis complex (Poaceae)

KAUST Repository

Huang, Chao-Li; Ho, Chuan-Wen; Chiang, Yu-Chung; Shigemoto, Yasumasa; Hsu, Tsai-Wen; Hwang, Chi-Chuan; Ge, Xue-Jun; Chen, Charles; Wu, Tai-Han; Chou, Chang-Hung; Huang, Hao-Jen; Gojobori, Takashi; Osada, Naoki; Chiang, Tzen-Yuh

2014-01-01

Young incipient species provide ideal materials for untangling the process of ecological speciation in the presence of gene flow. The Miscanthus floridulus/sinensis complex exhibits diverse phenotypic and ecological differences despite recent divergence (approximately 1.59million years ago). To elucidate the process of genetic differentiation during early stages of ecological speciation, we analyzed genomic divergence in the Miscanthus complex using 72 randomly selected genes from a newly assembled transcriptome. In this study, rampant gene flow was detected between species, estimated as M=3.36x10(-9) to 1.20x10(-6), resulting in contradicting phylogenies across loci. Nevertheless, beast analyses revealed the species identity and the effects of extrinsic cohesive forces that counteracted the non-stop introgression. As expected, early in speciation with gene flow, only 3-13 loci were highly diverged; two to five outliers (approximately 2.78-6.94% of the genome) were characterized by strong linkage disequilibrium, and asymmetrically distributed among ecotypes, indicating footprints of diversifying selection. In conclusion, ecological speciation of incipient species of Miscanthus probably followed the parapatric model, whereas allopatric speciation cannot be completely ruled out, especially between the geographically isolated northern and southern M.sinensis, for which no significant gene flow across oceanic barriers was detected. Divergence between local ecotypes in early-stage speciation began at a few genomic regions under the influence of natural selection and divergence hitchhiking that overcame gene flow.

Geological and climatic forces driving speciation in the continentally distributed trilling chorus frogs (Pseudacris).

Science.gov (United States)

Lemmon, Emily Moriarty; Lemmon, Alan R; Cannatella, David C

2007-09-01

Tertiary geological events and Quaternary climatic fluctuations have been proposed as important factors of speciation in the North American flora and fauna. Few studies, however, have rigorously tested hypotheses regarding the specific factors driving divergence of taxa. Here, we test explicit speciation hypotheses by correlating geologic events with divergence times among species in the continentally distributed trilling chorus frogs (Pseudacris). In particular, we ask whether marine inundation of the Mississippi Embayment, uplift of the Appalachian Mountains, or modification of the ancient Teays-Mahomet River system contributed to speciation. To examine the plausibility of ancient rivers causing divergence, we tested whether modern river systems inhibit gene flow. Additionally, we compared the effects of Quaternary climatic factors (glaciation and aridification) on levels of genetic variation. Divergence time estimates using penalized likelihood and coalescent approaches indicate that the major lineages of chorus frogs diversified during the Tertiary, and also exclude Quaternary climate change as a factor in speciation of chorus frogs. We show the first evidence that inundation of the Mississippi Embayment contributed to speciation. We reject the hypotheses that Cenozoic uplift of the Appalachians and that diversion of the Teays-Mahomet River contributed to speciation in this clade. We find that by reducing gene flow, rivers have the potential to cause divergence of lineages. Finally, we demonstrate that populations in areas affected by Quaternary glaciation and aridification have reduced levels of genetic variation compared to those from more equable regions, suggesting recent colonization.

Adaptive divergence with gene flow in incipient speciation of Miscanthus floridulus / sinensis complex (Poaceae)

KAUST Repository

Huang, Chao-Li

2014-11-11

Young incipient species provide ideal materials for untangling the process of ecological speciation in the presence of gene flow. The Miscanthus floridulus/sinensis complex exhibits diverse phenotypic and ecological differences despite recent divergence (approximately 1.59million years ago). To elucidate the process of genetic differentiation during early stages of ecological speciation, we analyzed genomic divergence in the Miscanthus complex using 72 randomly selected genes from a newly assembled transcriptome. In this study, rampant gene flow was detected between species, estimated as M=3.36x10(-9) to 1.20x10(-6), resulting in contradicting phylogenies across loci. Nevertheless, beast analyses revealed the species identity and the effects of extrinsic cohesive forces that counteracted the non-stop introgression. As expected, early in speciation with gene flow, only 3-13 loci were highly diverged; two to five outliers (approximately 2.78-6.94% of the genome) were characterized by strong linkage disequilibrium, and asymmetrically distributed among ecotypes, indicating footprints of diversifying selection. In conclusion, ecological speciation of incipient species of Miscanthus probably followed the parapatric model, whereas allopatric speciation cannot be completely ruled out, especially between the geographically isolated northern and southern M.sinensis, for which no significant gene flow across oceanic barriers was detected. Divergence between local ecotypes in early-stage speciation began at a few genomic regions under the influence of natural selection and divergence hitchhiking that overcame gene flow.

Numerical Simulations of Slow Stick Slip Events with PFC, a DEM Based Code

Science.gov (United States)

Ye, S. H.; Young, R. P.

2017-12-01

Nonvolcanic tremors around subduction zone have become a fascinating subject in seismology in recent years. Previous studies have shown that the nonvolcanic tremor beneath western Shikoku is composed of low frequency seismic waves overlapping each other. This finding provides direct link between tremor and slow earthquakes. Slow stick slip events are considered to be laboratory scaled slow earthquakes. Slow stick slip events are traditionally studied with direct shear or double direct shear experiment setup, in which the sliding velocity can be controlled to model a range of fast and slow stick slips. In this study, a PFC* model based on double direct shear is presented, with a central block clamped by two side blocks. The gauge layers between the central and side blocks are modelled as discrete fracture networks with smooth joint bonds between pairs of discrete elements. In addition, a second model is presented in this study. This model consists of a cylindrical sample subjected to triaxial stress. Similar to the previous model, a weak gauge layer at a 45 degrees is added into the sample, on which shear slipping is allowed. Several different simulations are conducted on this sample. While the confining stress is maintained at the same level in different simulations, the axial loading rate (displacement rate) varies. By varying the displacement rate, a range of slipping behaviour, from stick slip to slow stick slip are observed based on the stress-strain relationship. Currently, the stick slip and slow stick slip events are strictly observed based on the stress-strain relationship. In the future, we hope to monitor the displacement and velocity of the balls surrounding the gauge layer as a function of time, so as to generate a synthetic seismogram. This will allow us to extract seismic waveforms and potentially simulate the tremor-like waves found around subduction zones. *Particle flow code, a discrete element method based numerical simulation code developed by

Zebra: An advanced PWR lattice code

Energy Technology Data Exchange (ETDEWEB)

Cao, L.; Wu, H.; Zheng, Y. [School of Nuclear Science and Technology, Xi' an Jiaotong Univ., No. 28, Xianning West Road, Xi' an, ShannXi, 710049 (China)

2012-07-01

This paper presents an overview of an advanced PWR lattice code ZEBRA developed at NECP laboratory in Xi'an Jiaotong Univ.. The multi-group cross-section library is generated from the ENDF/B-VII library by NJOY and the 361-group SHEM structure is employed. The resonance calculation module is developed based on sub-group method. The transport solver is Auto-MOC code, which is a self-developed code based on the Method of Characteristic and the customization of AutoCAD software. The whole code is well organized in a modular software structure. Some numerical results during the validation of the code demonstrate that this code has a good precision and a high efficiency. (authors)

Zebra: An advanced PWR lattice code

International Nuclear Information System (INIS)

Cao, L.; Wu, H.; Zheng, Y.

2012-01-01

This paper presents an overview of an advanced PWR lattice code ZEBRA developed at NECP laboratory in Xi'an Jiaotong Univ.. The multi-group cross-section library is generated from the ENDF/B-VII library by NJOY and the 361-group SHEM structure is employed. The resonance calculation module is developed based on sub-group method. The transport solver is Auto-MOC code, which is a self-developed code based on the Method of Characteristic and the customization of AutoCAD software. The whole code is well organized in a modular software structure. Some numerical results during the validation of the code demonstrate that this code has a good precision and a high efficiency. (authors)

Fluid Dynamics Theory, Computation, and Numerical Simulation

CERN Document Server

Pozrikidis, Constantine

2009-01-01

Fluid Dynamics: Theory, Computation, and Numerical Simulation is the only available book that extends the classical field of fluid dynamics into the realm of scientific computing in a way that is both comprehensive and accessible to the beginner. The theory of fluid dynamics, and the implementation of solution procedures into numerical algorithms, are discussed hand-in-hand and with reference to computer programming. This book is an accessible introduction to theoretical and computational fluid dynamics (CFD), written from a modern perspective that unifies theory and numerical practice. There are several additions and subject expansions in the Second Edition of Fluid Dynamics, including new Matlab and FORTRAN codes. Two distinguishing features of the discourse are: solution procedures and algorithms are developed immediately after problem formulations are presented, and numerical methods are introduced on a need-to-know basis and in increasing order of difficulty. Matlab codes are presented and discussed for ...

The speciation of iodine in the environment

International Nuclear Information System (INIS)

Bulman, R.A.

1986-01-01

The speciation of iodine in the environment is discussed under the following topics: (i) sea surface to atmosphere, (ii) chemistry in bulk seawater, (iii) iodine in rocks, (iv) iodine in soils, (v) iodine in plants and (vi) iodine in solidified wastes. (author)

Speciation of Am(III)/Eu(III) sorbed on γ-alumina. Effect of metal ion concentration

International Nuclear Information System (INIS)

Kumar, S.; Tomar, B.S.; Godbole, S.V.

2013-01-01

The present paper describes the speciation of Am(III)/Eu(III) sorbed on γ-alumina, and its evolution with changing metal ion concentration, studied using batch sorption experiment, time resolved fluorescence spectroscopy (TRFS), extended X-ray absorption fine structure (EXAFS) and surface Complexation modeling (SCM). Though numerous studies exist in the literature on the speciation of trivalent actinides and lanthanides on alumina surface, the mechanism of sorption at high metal ion concentrations is not yet fully understood. Batch sorption experiments of Am(III) on γ-alumina under varying condition of pH (3-10), ionic strength (0.005-0.1 M NaClO 4 ) and metal ion concentration (10 -7 -10 -4 M) were performed. Higher metal ion concentration was achieved by the addition of Eu(III) considering it as an analogue of Am(III). Time resolved fluorescence spectroscopy (TRFS) study of Eu(III) sorbed on γ-alumina at the metal ion concentration of 5.0 x 10 -5 M was carried out over pH 4 to 7. TRFS showed the presence of two surface species, with distinctly different fluorescence decay life times. The shorter lifetime value and its changing pattern with pH indicate the surface species corresponding to this component to be monodentate species > AlOAm 2+ and its hydrolyzed forms. The sorbed Eu 3+ species corresponding to the longer lifetime value has 2-3 water molecules in its first coordination sphere and is multidentate in its binding on alumina surface. Extended X-ray absorption fine structure (EXAFS) measurement of Eu:γ-Al 2 O 3 sorption systems at pH 6.18 and 7.15 corroborate the existence of two surface complexes. Further it suggests the edge sharing bidentate binding of Eu on AlO 6 octahedra as the co-ordination mode of the higher lifetime component. Surface Complexation Modeling (SCM) of Am(III)/Eu(III) sorption onto γ-alumina at pH ≤7 has been carried out using these two surface species. 2-pK surface complexation modeling coupled with constant capacitance model

Atmospheric speciation of mercury in two contrasting Southeastern US airsheds

Science.gov (United States)

Gabriel, Mark C.; Williamson, Derek G.; Brooks, Steve; Lindberg, Steve

Simultaneous measurement of gaseous elemental, reactive gaseous, and fine particulate mercury took place in Tuscaloosa AL, (urban airshed) and Cove Mountain, TN (non-urban airshed) during the summers of 2002 and 2003. The objective of this research was to (1) summarize the temporal distribution of each mercury specie at each site and compare to other speciation data sets developed by other researchers and (2) provide insight into urban and non-urban mercury speciation effects using various statistical methods. Average specie concentrations were as follows: 4.05 ng m -3 (GEM), 13.6 pg m -3 (RGM), 16.4 pg m -3 (Hg-p) for Tuscaloosa; 3.20 ng m -3 (GEM), 13.6 pg m -3 (RGM), 9.73 pg m -3 (Hg-p) for Cove Mountain. As a result of urban airshed impacts, short periods of high concentration for all mercury species was common in Tuscaloosa. At Cove Mountain a consistent mid-day rise and evening drop for mercury species was found. This pattern was primarily the result of un-impacted physical boundary layer movement, although, other potential impacts were ambient photochemistry and air-surface exchange of mercury. Meteorological parameters that are known to heavily impact mercury speciation were similar for the study period for Tuscaloosa and Cove Mountain except for wind speed (m s -1), which was higher at Cove Mountain. For both sites statistically significant ( p<0.0001), inverse relationships existed between wind speed and Hg 0 concentration. A weaker windspeed-Hg 0 correlation existed for Tuscaloosa. By analyzing Hg concentration—wind speed magnitude change at both sites it was found that wind speed at Cove Mountain had a greater influence on Hg 0 concentration variability than Tuscaloosa by a factor of 3. Using various statistical tests, we concluded that the nature of Tuscaloosa's atmospheric mercury speciation was the result of typical urban airshed impacts. Cove Mountain showed atmospheric mercury speciation characteristics indicative of a non-urban area along with

Generic programming for deterministic neutron transport codes

International Nuclear Information System (INIS)

Plagne, L.; Poncot, A.

2005-01-01

This paper discusses the implementation of neutron transport codes via generic programming techniques. Two different Boltzmann equation approximations have been implemented, namely the Sn and SPn methods. This implementation experiment shows that generic programming allows us to improve maintainability and readability of source codes with no performance penalties compared to classical approaches. In the present implementation, matrices and vectors as well as linear algebra algorithms are treated separately from the rest of source code and gathered in a tool library called 'Generic Linear Algebra Solver System' (GLASS). Such a code architecture, based on a linear algebra library, allows us to separate the three different scientific fields involved in transport codes design: numerical analysis, reactor physics and computer science. Our library handles matrices with optional storage policies and thus applies both to Sn code, where the matrix elements are computed on the fly, and to SPn code where stored matrices are used. Thus, using GLASS allows us to share a large fraction of source code between Sn and SPn implementations. Moreover, the GLASS high level of abstraction allows the writing of numerical algorithms in a form which is very close to their textbook descriptions. Hence the GLASS algorithms collection, disconnected from computer science considerations (e.g. storage policy), is very easy to read, to maintain and to extend. (authors)

Speciation, diversification, and coexistence of sessile species that compete for space

DEFF Research Database (Denmark)

Mitarai, Namiko; Heinsalu, Els; Sneppen, Kim

2014-01-01

Speciation, diversification, and competition between species challenge the stability of complex ecosystems. Laboratory experiments often focus on one or two species competing under conditions where they may grow exponentially. Field studies, in contrast, emphasize multi-species communities...... appear due to immigration from outside of the considered ecosystem. The species self-organize their spatial distribution through competitive interactions to create many patches, implicitly protecting each other from competitively superior species, and speciation in each patch leads the system to high...

Arsenic speciation by liquid chromatography coupled with ionspray tandem mass spectrometry

DEFF Research Database (Denmark)

Corr, J. J.; Larsen, Erik Huusfeldt

1996-01-01

Ionspray mass spectrometry, a well established organic analysis technique, has been coupled to high-performance liquid chromatography for speciation of organic arsenic compounds, The ionspray source and differentially pumped interface of the mass spectrometer were operated in dual modes...... fragmentation patterns showing molecular dissociation through an expected common product ion were obtained for the four arsenosugars, Molecular mode detection was utilized for qualitative verification of speciation analysis by high-performance liquid chromatography coupled to inductively coupled plasma mass...

HPLC inorganic arsenic speciation analysis of samples containing high sulfuric acid and iron levels

NARCIS (Netherlands)

Gonzalez-Contreras, P.A.; Gerrits, I.P.A.M.; Weijma, J.; Buisman, C.J.N.

2011-01-01

To monitor the oxidation of arsenite to arsenate in oxidizing and bioleaching reactors, speciation analysis of the inorganic arsenic compounds is required. Existing arsenic speciation analysis techniques are based on the use of liquid chromatography columns coupled to detector equipment such as

Spurious Numerical Solutions Of Differential Equations

Science.gov (United States)

Lafon, A.; Yee, H. C.

1995-01-01

Paper presents detailed study of spurious steady-state numerical solutions of differential equations that contain nonlinear source terms. Main objectives of this study are (1) to investigate how well numerical steady-state solutions of model nonlinear reaction/convection boundary-value problem mimic true steady-state solutions and (2) to relate findings of this investigation to implications for interpretation of numerical results from computational-fluid-dynamics algorithms and computer codes used to simulate reacting flows.

WEC3: Wave Energy Converter Code Comparison Project: Preprint

Energy Technology Data Exchange (ETDEWEB)

Combourieu, Adrien; Lawson, Michael; Babarit, Aurelien; Ruehl, Kelley; Roy, Andre; Costello, Ronan; Laporte Weywada, Pauline; Bailey, Helen

2017-01-01

This paper describes the recently launched Wave Energy Converter Code Comparison (WEC3) project and present preliminary results from this effort. The objectives of WEC3 are to verify and validate numerical modelling tools that have been developed specifically to simulate wave energy conversion devices and to inform the upcoming IEA OES Annex VI Ocean Energy Modelling Verification and Validation project. WEC3 is divided into two phases. Phase 1 consists of a code-to-code verification and Phase II entails code-to-experiment validation. WEC3 focuses on mid-fidelity codes that simulate WECs using time-domain multibody dynamics methods to model device motions and hydrodynamic coefficients to model hydrodynamic forces. Consequently, high-fidelity numerical modelling tools, such as Navier-Stokes computational fluid dynamics simulation, and simple frequency domain modelling tools were not included in the WEC3 project.

Role of natural nanoparticles on the speciation of Ni in andosols of la Reunion

Science.gov (United States)

Levard, Clément; Doelsch, Emmanuel; Rose, Jérôme; Masion, Armand; Basile-Doelsch, Isabelle; Proux, Olivier; Hazemann, Jean-Louis; Borschneck, Daniel; Bottero, Jean-Yves

2009-08-01

Andosols on the island of Réunion have high nickel (Ni) concentrations due to the natural pedo-geochemical background. Enhanced knowledge of Ni speciation is necessary to predict the bioavailability and potential toxicity of this element. Ni speciation in these andosols, marked by the presence of high amounts of natural aluminosilicate nanoparticles, was investigated in two complementary systems: (i) In a soil sample—densimetric fractionation was first performed in order to separate the potential bearing phases, prior to Ni speciation characterization. (ii) In a synthetic sample—Ni reactivity with synthetic aluminosilicate nanoparticle analogs were studied. In both cases, Ni speciation was determined using X-ray absorption spectroscopy (XAS). The results revealed that Ni had the same local environment in both systems (natural and synthetic systems), and Ni was chemically linked to natural short-range ordered aluminosilicates or analogs. This complex represented about 75% of the total Ni in the studied soil.

Biogeochemical speciation of Fe in ocean water

NARCIS (Netherlands)

Hiemstra, T.; Riemsdijk, van W.H.

2006-01-01

The biogeochemical speciation of Fe in seawater has been evaluated using the consistent Non-Ideal Competitive Adsorption model (NICA¿Donnan model). Two types of data sets were used, i.e. Fe-hydroxide solubility data and competitive ligand equilibration/cathodic stripping voltammetry (CLE/CSV) Fe

Recent trends in nanomaterial-based microanalytical systems for the speciation of trace elements: A critical review.

Science.gov (United States)

Tseng, Wei-Chang; Hsu, Keng-Chang; Shiea, Christopher Stephen; Huang, Yeou-Lih

2015-07-16

Trace element speciation in biomedical and environmental science has gained increasing attention over the past decade as researchers have begun to realize its importance in toxicological studies. Several nanomaterials, including titanium dioxide nanoparticles (nano-TiO2), carbon nanotubes (CNTs), and magnetic nanoparticles (MNPs), have been used as sorbents to separate and preconcentrate trace element species prior to detection through mass spectrometry or optical spectroscopy. Recently, these nanomaterial-based speciation techniques have been integrated with microfluidics to minimize sample and reagent consumption and simplify analyses. This review provides a critical look into the present state and recent applications of nanomaterial-based microanalytical systems in the speciation of trace elements. The adsorption and preconcentration efficiencies, sample volume requirements, and detection limits of these nanomaterial-based speciation techniques are detailed, and their applications in environmental and biological analyses are discussed. Current perspectives and future trends into the increasing use of nanomaterial-based microfluidic techniques for trace element speciation are highlighted. Copyright © 2015 Elsevier B.V. All rights reserved.

NORTICA - a new code for cyclotron analysis

International Nuclear Information System (INIS)

Gorelov, D.; Johnson, D.; Marti, F.

2001-01-01

The new package NORTICA (Numerical ORbit Tracking In Cyclotrons with Analysis) of computer codes for beam dynamics simulations is under development at NSCL. The package was started as a replacement for the code MONSTER developed in the laboratory in the past. The new codes are capable of beam dynamics simulations in both CCF (Coupled Cyclotron Facility) accelerators, the K500 and K1200 superconducting cyclotrons. The general purpose of this package is assisting in setting and tuning the cyclotrons taking into account the main field and extraction channel imperfections. The computer platform for the package is Alpha Station with UNIX operating system and X-Windows graphic interface. A multiple programming language approach was used in order to combine the reliability of the numerical algorithms developed over the long period of time in the laboratory and the friendliness of modern style user interface. This paper describes the capability and features of the codes in the present state

NORTICA—a new code for cyclotron analysis

Science.gov (United States)

Gorelov, D.; Johnson, D.; Marti, F.

2001-12-01

The new package NORTICA (Numerical ORbit Tracking In Cyclotrons with Analysis) of computer codes for beam dynamics simulations is under development at NSCL. The package was started as a replacement for the code MONSTER [1] developed in the laboratory in the past. The new codes are capable of beam dynamics simulations in both CCF (Coupled Cyclotron Facility) accelerators, the K500 and K1200 superconducting cyclotrons. The general purpose of this package is assisting in setting and tuning the cyclotrons taking into account the main field and extraction channel imperfections. The computer platform for the package is Alpha Station with UNIX operating system and X-Windows graphic interface. A multiple programming language approach was used in order to combine the reliability of the numerical algorithms developed over the long period of time in the laboratory and the friendliness of modern style user interface. This paper describes the capability and features of the codes in the present state.

Computer codes for RF cavity design

International Nuclear Information System (INIS)

Ko, K.

1992-08-01

In RF cavity design, numerical modeling is assuming an increasingly important role with the help of sophisticated computer codes and powerful yet affordable computers. A description of the cavity codes in use in the accelerator community has been given previously. The present paper will address the latest developments and discuss their applications to cavity toning and matching problems

Genetic tests for ecological and allopatric speciation in anoles on an island archipelago.

Science.gov (United States)

Thorpe, Roger S; Surget-Groba, Yann; Johansson, Helena

2010-04-29

From Darwin's study of the Galapagos and Wallace's study of Indonesia, islands have played an important role in evolutionary investigations, and radiations within archipelagos are readily interpreted as supporting the conventional view of allopatric speciation. Even during the ongoing paradigm shift towards other modes of speciation, island radiations, such as the Lesser Antillean anoles, are thought to exemplify this process. Geological and molecular phylogenetic evidence show that, in this archipelago, Martinique anoles provide several examples of secondary contact of island species. Four precursor island species, with up to 8 mybp divergence, met when their islands coalesced to form the current island of Martinique. Moreover, adjacent anole populations also show marked adaptation to distinct habitat zonation, allowing both allopatric and ecological speciation to be tested in this system. We take advantage of this opportunity of replicated island coalescence and independent ecological adaptation to carry out an extensive population genetic study of hypervariable neutral nuclear markers to show that even after these very substantial periods of spatial isolation these putative allospecies show less reproductive isolation than conspecific populations in adjacent habitats in all three cases of subsequent island coalescence. The degree of genetic interchange shows that while there is always a significant genetic signature of past allopatry, and this may be quite strong if the selection regime allows, there is no case of complete allopatric speciation, in spite of the strong primae facie case for it. Importantly there is greater genetic isolation across the xeric/rainforest ecotone than is associated with any secondary contact. This rejects the development of reproductive isolation in allopatric divergence, but supports the potential for ecological speciation, even though full speciation has not been achieved in this case. It also explains the paucity of anole species

Analytical methodologies for aluminium speciation in environmental and biological samples--a review.

Science.gov (United States)

Bi, S P; Yang, X D; Zhang, F P; Wang, X L; Zou, G W

2001-08-01

It is recognized that aluminium (Al) is a potential environmental hazard. Acidic deposition has been linked to increased Al concentrations in natural waters. Elevated levels of Al might have serious consequences for biological communities. Of particular interest is the speciation of Al in aquatic environments, because Al toxicity depends on its forms and concentrations. In this paper, advances in analytical methodologies for Al speciation in environmental and biological samples during the past five years are reviewed. Concerns about the specific problems of Al speciation and highlights of some important methods are elucidated in sections devoted to hybrid techniques (HPLC or FPLC coupled with ET-AAS, ICP-AES, or ICP-MS), flow-injection analysis (FIA), nuclear magnetic resonance (27Al NMR), electrochemical analysis, and computer simulation. More than 130 references are cited.

Mechanisms by Which Phenotypic Plasticity Affects Adaptive Divergence and Ecological Speciation.

Science.gov (United States)

Nonaka, Etsuko; Svanbäck, Richard; Thibert-Plante, Xavier; Englund, Göran; Brännström, Åke

2015-11-01

Phenotypic plasticity is the ability of one genotype to produce different phenotypes depending on environmental conditions. Several conceptual models emphasize the role of plasticity in promoting reproductive isolation and, ultimately, speciation in populations that forage on two or more resources. These models predict that plasticity plays a critical role in the early stages of speciation, prior to genetic divergence, by facilitating fast phenotypic divergence. The ability to plastically express alternative phenotypes may, however, interfere with the early phase of the formation of reproductive barriers, especially in the absence of geographic barriers. Here, we quantitatively investigate mechanisms under which plasticity can influence progress toward adaptive genetic diversification and ecological speciation. We use a stochastic, individual-based model of a predator-prey system incorporating sexual reproduction and mate choice in the predator. Our results show that evolving plasticity promotes the evolution of reproductive isolation under diversifying environments when individuals are able to correctly select a more profitable habitat with respect to their phenotypes (i.e., adaptive habitat choice) and to assortatively mate with relatively similar phenotypes. On the other hand, plasticity facilitates the evolution of plastic generalists when individuals have a limited capacity for adaptive habitat choice. We conclude that plasticity can accelerate the evolution of a reproductive barrier toward adaptive diversification and ecological speciation through enhanced phenotypic differentiation between diverging phenotypes.

Evolution of blind beetles in isolated aquifers: a test of alternative modes of speciation

NARCIS (Netherlands)

Leys, R.; Nes, van E.H.; Watts, C.H.; Cooper, S.J.B.; Humphreys, W.F.; Hogendoorn, K.

2012-01-01

Evidence is growing that not only allopatric but also sympatric speciation can be important in the evolution of species. Sympatric speciation has most convincingly been demonstrated in laboratory experiments with bacteria, but field-based evidence is limited to a few cases. The recently discovered

Numerical simulation of Ge solar cells using D-AMPS-1D code

Energy Technology Data Exchange (ETDEWEB)

Barrera, Marcela, E-mail: barrera@tandar.cnea.gov.ar [Comision Nacional de Energia Atomica, Avenida General Paz 1499, San Martin 1650, Buenos Aires (Argentina); Consejo Nacional de Investigaciones Cientificas y Tecnicas (CONICET) (Argentina); Rubinelli, Francisco [Instituto de Desarrollo Tecnologico para la Industria Quimica (INTEC)-CONICET, Gueemes 3450, Santa Fe 3000 (Argentina); Rey-Stolle, Ignacio [Instituto de Energia Solar, Universidad Politecnica de Madrid, Avenida Complutense 30, Madrid 28040 (Spain); Pla, Juan [Comision Nacional de Energia Atomica, Avenida General Paz 1499, San Martin 1650, Buenos Aires (Argentina); Consejo Nacional de Investigaciones Cientificas y Tecnicas (CONICET) (Argentina)

2012-08-15

A solar cell is a solid state device that converts the energy of sunlight directly into electricity by the photovoltaic effect. When light with photon energies greater than the band gap is absorbed by a semiconductor material, free electrons and free holes are generated by optical excitation in the material. The main characteristic of a photovoltaic device is the presence of internal electric field able to separate the free electrons and holes so they can pass out of the material to the external circuit before they recombine. Numerical simulation of photovoltaic devices plays a crucial role in their design, performance prediction, and comprehension of the fundamental phenomena ruling their operation. The electrical transport and the optical behavior of the solar cells discussed in this work were studied with the simulation code D-AMPS-1D. This software is an updated version of the one-dimensional (1D) simulation program Analysis of Microelectronic and Photonic Devices (AMPS) that was initially developed at The Penn State University, USA. Structures such as homojunctions, heterojunctions, multijunctions, etc., resulting from stacking layers of different materials can be studied by appropriately selecting characteristic parameters. In this work, examples of cells simulation made with D-AMPS-1D are shown. Particularly, results of Ge photovoltaic devices are presented. The role of the InGaP buffer on the device was studied. Moreover, a comparison of the simulated electrical parameters with experimental results was performed.

Numerical simulation of Ge solar cells using D-AMPS-1D code

International Nuclear Information System (INIS)

Barrera, Marcela; Rubinelli, Francisco; Rey-Stolle, Ignacio; Plá, Juan

2012-01-01

A solar cell is a solid state device that converts the energy of sunlight directly into electricity by the photovoltaic effect. When light with photon energies greater than the band gap is absorbed by a semiconductor material, free electrons and free holes are generated by optical excitation in the material. The main characteristic of a photovoltaic device is the presence of internal electric field able to separate the free electrons and holes so they can pass out of the material to the external circuit before they recombine. Numerical simulation of photovoltaic devices plays a crucial role in their design, performance prediction, and comprehension of the fundamental phenomena ruling their operation. The electrical transport and the optical behavior of the solar cells discussed in this work were studied with the simulation code D-AMPS-1D. This software is an updated version of the one-dimensional (1D) simulation program Analysis of Microelectronic and Photonic Devices (AMPS) that was initially developed at The Penn State University, USA. Structures such as homojunctions, heterojunctions, multijunctions, etc., resulting from stacking layers of different materials can be studied by appropriately selecting characteristic parameters. In this work, examples of cells simulation made with D-AMPS-1D are shown. Particularly, results of Ge photovoltaic devices are presented. The role of the InGaP buffer on the device was studied. Moreover, a comparison of the simulated electrical parameters with experimental results was performed.

Development of new two-dimensional spectral/spatial code based on dynamic cyclic shift code for OCDMA system

Science.gov (United States)

Jellali, Nabiha; Najjar, Monia; Ferchichi, Moez; Rezig, Houria

2017-07-01

In this paper, a new two-dimensional spectral/spatial codes family, named two dimensional dynamic cyclic shift codes (2D-DCS) is introduced. The 2D-DCS codes are derived from the dynamic cyclic shift code for the spectral and spatial coding. The proposed system can fully eliminate the multiple access interference (MAI) by using the MAI cancellation property. The effect of shot noise, phase-induced intensity noise and thermal noise are used to analyze the code performance. In comparison with existing two dimensional (2D) codes, such as 2D perfect difference (2D-PD), 2D Extended Enhanced Double Weight (2D-Extended-EDW) and 2D hybrid (2D-FCC/MDW) codes, the numerical results show that our proposed codes have the best performance. By keeping the same code length and increasing the spatial code, the performance of our 2D-DCS system is enhanced: it provides higher data rates while using lower transmitted power and a smaller spectral width.

Input/output manual of light water reactor fuel performance code FEMAXI-7 and its related codes

Energy Technology Data Exchange (ETDEWEB)

Suzuki, Motoe; Udagawa, Yutaka; Nagase, Fumihisa [Japan Atomic Energy Agency, Nuclear Safety Research Center, Tokai, Ibaraki (Japan); Saitou, Hiroaki [ITOCHU Techno-Solutions Corp., Tokyo (Japan)

2012-07-15

A light water reactor fuel analysis code FEMAXI-7 has been developed for the purpose of analyzing the fuel behavior in normal conditions and in anticipated transient conditions. Numerous functional improvements and extensions have been incorporated in FEMAXI-7, which has been fully disclosed in the code model description published recently as JAEA-Data/Code 2010-035. The present manual, which is the counterpart of this description, gives detailed explanations of operation method of FEMAXI-7 code and its related codes, methods of Input/Output, methods of source code modification, features of subroutine modules, and internal variables in a specific manner in order to facilitate users to perform a fuel analysis with FEMAXI-7. This report includes some descriptions which are modified from the original contents of JAEA-Data/Code 2010-035. A CD-ROM is attached as an appendix. (author)

Input/output manual of light water reactor fuel performance code FEMAXI-7 and its related codes

International Nuclear Information System (INIS)

Suzuki, Motoe; Udagawa, Yutaka; Nagase, Fumihisa; Saitou, Hiroaki

2012-07-01

A light water reactor fuel analysis code FEMAXI-7 has been developed for the purpose of analyzing the fuel behavior in normal conditions and in anticipated transient conditions. Numerous functional improvements and extensions have been incorporated in FEMAXI-7, which has been fully disclosed in the code model description published recently as JAEA-Data/Code 2010-035. The present manual, which is the counterpart of this description, gives detailed explanations of operation method of FEMAXI-7 code and its related codes, methods of Input/Output, methods of source code modification, features of subroutine modules, and internal variables in a specific manner in order to facilitate users to perform a fuel analysis with FEMAXI-7. This report includes some descriptions which are modified from the original contents of JAEA-Data/Code 2010-035. A CD-ROM is attached as an appendix. (author)

MHD code using multi graphical processing units: SMAUG+

Science.gov (United States)

Gyenge, N.; Griffiths, M. K.; Erdélyi, R.

2018-01-01

This paper introduces the Sheffield Magnetohydrodynamics Algorithm Using GPUs (SMAUG+), an advanced numerical code for solving magnetohydrodynamic (MHD) problems, using multi-GPU systems. Multi-GPU systems facilitate the development of accelerated codes and enable us to investigate larger model sizes and/or more detailed computational domain resolutions. This is a significant advancement over the parent single-GPU MHD code, SMAUG (Griffiths et al., 2015). Here, we demonstrate the validity of the SMAUG + code, describe the parallelisation techniques and investigate performance benchmarks. The initial configuration of the Orszag-Tang vortex simulations are distributed among 4, 16, 64 and 100 GPUs. Furthermore, different simulation box resolutions are applied: 1000 × 1000, 2044 × 2044, 4000 × 4000 and 8000 × 8000 . We also tested the code with the Brio-Wu shock tube simulations with model size of 800 employing up to 10 GPUs. Based on the test results, we observed speed ups and slow downs, depending on the granularity and the communication overhead of certain parallel tasks. The main aim of the code development is to provide massively parallel code without the memory limitation of a single GPU. By using our code, the applied model size could be significantly increased. We demonstrate that we are able to successfully compute numerically valid and large 2D MHD problems.

Contributions to multiple element speciation in vegetable plants: Studies on the type of bonding of numerous elements, particularly zinc and cadmium

International Nuclear Information System (INIS)

Guenther, K.

1997-03-01

In the first part of the study, the total contents and the solubility characteristics of Zn, Cd, Fe, Mn, Cu, Ca, Sr, K and Rb in 26 different vegetable plants, the majority of them commercially available, are reported, obtained by post-decomposition analyses. The data are given for avocados, bananas, cauliflower, chicory, Chinese cabbage, dill, ice lettuce (two specimens), endive, field salad, cucumbers, kohlrabi, lettuce, chard beet, carrots, peppers, leek, radish, red cabbage, loose leaved lettuce, celery (two specimens), spinach, topinambur, white cabbage, and parsley. Cell decomposition was done by treatment of the plant material with an electric dispersing apparatus (Ultra-Turrax) in buffer solution (liquid shearing). The homogenates were separated into supernatants (cytosoles)and pellets by means of centrifugation. Cell decomposition of the plants by crushing with quartz sand after lyophilization (solid shearing) required much more technical effort and for some elements created problems with the blind values. At least 50% on the average of the elements Zn, Cd, Rb, and K could be transferred to the solutions by the dispersing treatment with Ultra-Turrax. In many cases, the cytosole-borne detectable contents of these 5 elements were above 70%. The solubility of Zn and Cd was more strongly dependent on the plant species than that of Cu, Rb, and K. All five elements thus can be analysed by conventional methods for further enhanced speciation. Mn, Ca, and especially Fe and Sr for the most part were found to be bonded to solid cell constituents. However, the solubility characteristics of Ca and Mn and Sr in particular was very homogeneous. In some plants, the contents of Mn and Sr in the cytosoles was approx. 90%, so that comprehensive speciation of these elements is possible. (orig./AJ) [de

Speciation and gene flow between snails of opposite chirality.

Directory of Open Access Journals (Sweden)

Angus Davison

2005-09-01

Full Text Available Left-right asymmetry in snails is intriguing because individuals of opposite chirality are either unable to mate or can only mate with difficulty, so could be reproductively isolated from each other. We have therefore investigated chiral evolution in the Japanese land snail genus Euhadra to understand whether changes in chirality have promoted speciation. In particular, we aimed to understand the effect of the maternal inheritance of chirality on reproductive isolation and gene flow. We found that the mitochondrial DNA phylogeny of Euhadra is consistent with a single, relatively ancient evolution of sinistral species and suggests either recent "single-gene speciation" or gene flow between chiral morphs that are unable to mate. To clarify the conditions under which new chiral morphs might evolve and whether single-gene speciation can occur, we developed a mathematical model that is relevant to any maternal-effect gene. The model shows that reproductive character displacement can promote the evolution of new chiral morphs, tending to counteract the positive frequency-dependent selection that would otherwise drive the more common chiral morph to fixation. This therefore suggests a general mechanism as to how chiral variation arises in snails. In populations that contain both chiral morphs, two different situations are then possible. In the first, gene flow is substantial between morphs even without interchiral mating, because of the maternal inheritance of chirality. In the second, reproductive isolation is possible but unstable, and will also lead to gene flow if intrachiral matings occasionally produce offspring with the opposite chirality. Together, the results imply that speciation by chiral reversal is only meaningful in the context of a complex biogeographical process, and so must usually involve other factors. In order to understand the roles of reproductive character displacement and gene flow in the chiral evolution of Euhadra, it will be

LSENS: A General Chemical Kinetics and Sensitivity Analysis Code for homogeneous gas-phase reactions. Part 1: Theory and numerical solution procedures

Science.gov (United States)

Radhakrishnan, Krishnan

1994-01-01

LSENS, the Lewis General Chemical Kinetics and Sensitivity Analysis Code, has been developed for solving complex, homogeneous, gas-phase chemical kinetics problems and contains sensitivity analysis for a variety of problems, including nonisothermal situations. This report is part 1 of a series of three reference publications that describe LENS, provide a detailed guide to its usage, and present many example problems. Part 1 derives the governing equations and describes the numerical solution procedures for the types of problems that can be solved. The accuracy and efficiency of LSENS are examined by means of various test problems, and comparisons with other methods and codes are presented. LSENS is a flexible, convenient, accurate, and efficient solver for chemical reaction problems such as static system; steady, one-dimensional, inviscid flow; reaction behind incident shock wave, including boundary layer correction; and perfectly stirred (highly backmixed) reactor. In addition, the chemical equilibrium state can be computed for the following assigned states: temperature and pressure, enthalpy and pressure, temperature and volume, and internal energy and volume. For static problems the code computes the sensitivity coefficients of the dependent variables and their temporal derivatives with respect to the initial values of the dependent variables and/or the three rate coefficient parameters of the chemical reactions.

VOA: a 2-d plasma physics code

International Nuclear Information System (INIS)

Eltgroth, P.G.

1975-12-01

A 2-dimensional relativistic plasma physics code was written and tested. The non-thermal components of the particle distribution functions are represented by expansion into moments in momentum space. These moments are computed directly from numerical equations. Currently three species are included - electrons, ions and ''beam electrons''. The computer code runs on either the 7600 or STAR machines at LLL. Both the physics and the operation of the code are discussed

Analysis of quantum error-correcting codes: Symplectic lattice codes and toric codes

Science.gov (United States)

Harrington, James William

Quantum information theory is concerned with identifying how quantum mechanical resources (such as entangled quantum states) can be utilized for a number of information processing tasks, including data storage, computation, communication, and cryptography. Efficient quantum algorithms and protocols have been developed for performing some tasks (e.g. , factoring large numbers, securely communicating over a public channel, and simulating quantum mechanical systems) that appear to be very difficult with just classical resources. In addition to identifying the separation between classical and quantum computational power, much of the theoretical focus in this field over the last decade has been concerned with finding novel ways of encoding quantum information that are robust against errors, which is an important step toward building practical quantum information processing devices. In this thesis I present some results on the quantum error-correcting properties of oscillator codes (also described as symplectic lattice codes) and toric codes. Any harmonic oscillator system (such as a mode of light) can be encoded with quantum information via symplectic lattice codes that are robust against shifts in the system's continuous quantum variables. I show the existence of lattice codes whose achievable rates match the one-shot coherent information over the Gaussian quantum channel. Also, I construct a family of symplectic self-dual lattices and search for optimal encodings of quantum information distributed between several oscillators. Toric codes provide encodings of quantum information into two-dimensional spin lattices that are robust against local clusters of errors and which require only local quantum operations for error correction. Numerical simulations of this system under various error models provide a calculation of the accuracy threshold for quantum memory using toric codes, which can be related to phase transitions in certain condensed matter models. I also present

Characterization of iron speciation in urban and rural single particles using XANES spectroscopy and micro X-ray fluorescence measurements: investigating the relationship between speciation and fractional iron solubility

OpenAIRE

Oakes, M.; Weber, R. J.; Lai, B.; Russell, A.; Ingall, E. D.

2012-01-01

Soluble iron in fine atmospheric particles has been identified as a public health concern by participating in reactions that generate reactive oxygen species (ROS). The mineralogy and oxidation state (speciation) of iron have been shown to influence fractional iron solubility (soluble iron/total iron). In this study, iron speciation was determined in single particles at urban and rural sites in Georgia USA using synchrotron-based techniques, such as X-ray Absorption Near-Edge Structure (XANES...

Input/output manual of light water reactor fuel analysis code FEMAXI-7 and its related codes

Energy Technology Data Exchange (ETDEWEB)

Suzuki, Motoe; Udagawa, Yutaka; Nagase, Fumihisa [Japan Atomic Energy Agency, Nuclear Safety Research Center, Tokai, Ibaraki (Japan); Saitou, Hiroaki [ITOCHU Techno-Solutions Corporation, Tokyo (Japan)

2013-10-15

A light water reactor fuel analysis code FEMAXI-7 has been developed, as an extended version from the former version FEMAXI-6, for the purpose of analyzing the fuel behavior in normal conditions and in anticipated transient conditions. Numerous functional improvements and extensions have been incorporated in FEMAXI-7, which are fully disclosed in the code model description published in the form of another JAEA-Data/Code report. The present manual, which is the very counterpart of this description document, gives detailed explanations of files and operation method of FEMAXI-7 code and its related codes, methods of input/output, sample Input/Output, methods of source code modification, subroutine structure, and internal variables in a specific manner in order to facilitate users to perform fuel analysis by FEMAXI-7. (author)

Input/output manual of light water reactor fuel analysis code FEMAXI-7 and its related codes

International Nuclear Information System (INIS)

Suzuki, Motoe; Udagawa, Yutaka; Nagase, Fumihisa; Saitou, Hiroaki

2013-10-01

A light water reactor fuel analysis code FEMAXI-7 has been developed, as an extended version from the former version FEMAXI-6, for the purpose of analyzing the fuel behavior in normal conditions and in anticipated transient conditions. Numerous functional improvements and extensions have been incorporated in FEMAXI-7, which are fully disclosed in the code model description published in the form of another JAEA-Data/Code report. The present manual, which is the very counterpart of this description document, gives detailed explanations of files and operation method of FEMAXI-7 code and its related codes, methods of input/output, sample Input/Output, methods of source code modification, subroutine structure, and internal variables in a specific manner in order to facilitate users to perform fuel analysis by FEMAXI-7. (author)

Exact solutions, numerical relativity and gravitational radiation

International Nuclear Information System (INIS)

Winicour, J.

1986-01-01

In recent years, there has emerged a new use for exact solutions to Einstein's equation as checks on the accuracy of numerical relativity codes. Much has already been written about codes based upon the space-like Cauchy problem. In the case of two Killing vectors, a numerical characteristic initial value formulation based upon two intersecting families of null hypersurfaces has successfully evolved the Schwarzschild and the colliding plane wave vacuum solutions. Here the author discusses, in the context of exact solutions, numerical studies of gravitational radiation based upon the null cone initial value problem. Every stage of progress in the null cone approach has been associated with exact solutions in some sense. He begins by briefly recapping this history. Then he presents two new examples illustrating how exact solutions can be useful

Recent Developments in the Speciation and Determination of Mercury Using Various Analytical Techniques

Directory of Open Access Journals (Sweden)

Lakshmi Narayana Suvarapu

2015-01-01

Full Text Available This paper reviews the speciation and determination of mercury by various analytical techniques such as atomic absorption spectrometry, voltammetry, inductively coupled plasma techniques, spectrophotometry, spectrofluorometry, high performance liquid chromatography, and gas chromatography. Approximately 126 research papers on the speciation and determination of mercury by various analytical techniques published in international journals since 2013 are reviewed.

Fluid dynamics theory, computation, and numerical simulation

CERN Document Server

Pozrikidis, C

2001-01-01

Fluid Dynamics Theory, Computation, and Numerical Simulation is the only available book that extends the classical field of fluid dynamics into the realm of scientific computing in a way that is both comprehensive and accessible to the beginner The theory of fluid dynamics, and the implementation of solution procedures into numerical algorithms, are discussed hand-in-hand and with reference to computer programming This book is an accessible introduction to theoretical and computational fluid dynamics (CFD), written from a modern perspective that unifies theory and numerical practice There are several additions and subject expansions in the Second Edition of Fluid Dynamics, including new Matlab and FORTRAN codes Two distinguishing features of the discourse are solution procedures and algorithms are developed immediately after problem formulations are presented, and numerical methods are introduced on a need-to-know basis and in increasing order of difficulty Matlab codes are presented and discussed for a broad...

Numerical simulation of hypersonic flight experiment vehicle

OpenAIRE

Yamamoto, Yukimitsu; Yoshioka, Minako; 山本　行光; 吉岡　美菜子

1994-01-01

Hypersonic aerodynamic characteristics of Hypersonic FLight EXperiment (HYFLEX vehicle were investigated by numerical simulations using Navier-Stokes CFD (Computational Fluid Dynamics) code of NAL. Numerical results were compared with experimental data obtained at Hypersonic Wind Tunnel at NAL. In order to investigate real flight aerodynamic characteristics. numerical calculations corresponding to the flight conditions suffering from maximum aero thermodynamic heating were also made and the d...

QC-LDPC code-based cryptography

CERN Document Server

Baldi, Marco

2014-01-01

This book describes the fundamentals of cryptographic primitives based on quasi-cyclic low-density parity-check (QC-LDPC) codes, with a special focus on the use of these codes in public-key cryptosystems derived from the McEliece and Niederreiter schemes. In the first part of the book, the main characteristics of QC-LDPC codes are reviewed, and several techniques for their design are presented, while tools for assessing the error correction performance of these codes are also described. Some families of QC-LDPC codes that are best suited for use in cryptography are also presented. The second part of the book focuses on the McEliece and Niederreiter cryptosystems, both in their original forms and in some subsequent variants. The applicability of QC-LDPC codes in these frameworks is investigated by means of theoretical analyses and numerical tools, in order to assess their benefits and drawbacks in terms of system efficiency and security. Several examples of QC-LDPC code-based public key cryptosystems are prese...

Influence of EDDS on metal speciation in soil extracts: Measurement and mechanistic multicomponent modeling

NARCIS (Netherlands)

Koopmans, G.F.; Schenkeveld, W.D.C.; Song, J.; Luo, Y.; Japenga, J.; Temminghoff, E.J.M.

2008-01-01

The use of the [S,S]-isomer of EDDS to enhance phytoextraction has been proposed for the remediation of heavy metal contaminated soils. Speciation of metals in soil solution in the presence of EDDS and dissolved organic matter (DOM) received, however, almost no attention, whereas metal speciation

Development of 2-d cfd code

International Nuclear Information System (INIS)

Mirza, S.A.

1999-01-01

In the present study, a two-dimensional computer code has been developed in FORTRAN using CFD technique, which is basically a numerical scheme. This computer code solves the Navier Stokes equations and continuity equation to find out the velocity and pressure fields within a given domain. This analysis has been done for the developed within a square cavity driven by the upper wall which has become a bench mark for testing and comparing the newly developed numerical schemes. Before to handle this task, different one-dimensional cases have been studied by CFD technique and their FORTRAN programs written. The cases studied are Couette flow, Poiseuille flow with and without using symmetric boundary condition. Finally a comparison between CFD results and analytical results has also been made. For the cavity flow the results from the developed code have been obtained for different Reynolds numbers which are finally presented in the form of velocity vectors. The comparison of the developed code results have been made with the results obtained from the share ware version of a commercially available code for Reynolds number of 10.0. The disagreement in the results quantitatively and qualitatively at some grid points of the calculation domain have been discussed and future recommendations in this regard have also been made. (author)

QR codes: next level of social media.

Science.gov (United States)

Gottesman, Wesley; Baum, Neil

2013-01-01

The OR code, which is short for quick response code, system was invented in Japan for the auto industry. Its purpose was to track vehicles during manufacture; it was designed to allow high-speed component scanning. Now the scanning can be easily accomplished via cell phone, making the technology useful and within reach of your patients. There are numerous applications for OR codes in the contemporary medical practice. This article describes QR codes and how they might be applied for marketing and practice management.

Chromium fractionation and speciation in natural waters.

Science.gov (United States)

Pereira, Catarinie Diniz; Techy, João Gabriel; Ganzarolli, Edgard Moreira; Quináia, Sueli Pércio

2012-05-01

It is common for leather industries to dump chromium-contaminated effluent into rivers and other bodies of water. Thus, it is crucial to know the impacts caused by this practice to the environment. A study on chromium partitioning and speciation, with determination at trace levels, was carried out in a potentially contaminated creek. Chromium fractionation and speciation was performed using a flow-injection preconcentration system and detection by flame atomic absorption spectrometry. High levels of this element were found in the particulate material (449-9320 mg kg(-1)), which indicates its compatibility with this fraction. The concentration of Cr(iii) in the water samples collected ranged from 5.2-105.2 μg L(-1). Cr(vi) was always below of the DL (0.3 μg L(-1)). Chromium accumulation observed in the sediment (873-1691 mg kg(-1)) may confirm contamination due to the long term release of contaminated effluents in the creek.

Empirical validation of the triple-code model of numerical processing for complex math operations using functional MRI and group Independent Component Analysis of the mental addition and subtraction of fractions.

Science.gov (United States)

Schmithorst, Vincent J; Brown, Rhonda Douglas

2004-07-01

The suitability of a previously hypothesized triple-code model of numerical processing, involving analog magnitude, auditory verbal, and visual Arabic codes of representation, was investigated for the complex mathematical task of the mental addition and subtraction of fractions. Functional magnetic resonance imaging (fMRI) data from 15 normal adult subjects were processed using exploratory group Independent Component Analysis (ICA). Separate task-related components were found with activation in bilateral inferior parietal, left perisylvian, and ventral occipitotemporal areas. These results support the hypothesized triple-code model corresponding to the activated regions found in the individual components and indicate that the triple-code model may be a suitable framework for analyzing the neuropsychological bases of the performance of complex mathematical tasks. Copyright 2004 Elsevier Inc.

Speciation of Mercury in Selected Areas of the Petroleum Value Chain.

Science.gov (United States)

Avellan, Astrid; Stegemeier, John P; Gai, Ke; Dale, James; Hsu-Kim, Heileen; Levard, Clément; O'Rear, Dennis; Hoelen, Thomas P; Lowry, Gregory V

2018-02-06

Petroleum, natural gas, and natural gas condensate can contain low levels of mercury (Hg). The speciation of Hg can affect its behavior during processing, transport, and storage so efficient and safe management of Hg requires an understanding of its chemical form in oil, gas and byproducts. Here, X-ray absorption spectroscopy was used to determine the Hg speciation in samples of solid residues collected throughout the petroleum value chain including stabilized crude oil residues, sediments from separation tanks and condensate glycol dehydrators, distillation column pipe scale, and biosludge from wastewater treatment. In all samples except glycol dehydrators, metacinnabar (β-HgS) was the primary form of Hg. Electron microscopy on particles from a crude sediment showed nanosized (crude oil being processed, i.e. sweet (low sulfur crudes) vs sour (higher sulfur crudes). This information on Hg speciation in the petroleum value chain will inform development of better engineering controls and management practices for Hg.

UNSAT-H, an unsaturated soil water flow code for use at the Hanford site: code documentation

International Nuclear Information System (INIS)

Fayer, M.J.; Gee, G.W.

1985-10-01

The unsaturated soil moisture flow code, UNSAT-H, which was developed at Pacific Northwest Laboratory for assessing water movement at waste sites on the Hanford site, is documented in this report. This code is used in simulating the water dynamics of arid sites under consideration for waste disposal. The results of an example simulation of constant infiltration show excellent agreement with an analytical solution and another numerical solution, thus providing some verification of the UNSAT-H code. Areas of the code are identified for future work and include runoff, snowmelt, long-term climate and plant models, and parameter measurement. 29 refs., 7 figs., 2 tabs

Micronutrient metal speciation is driven by competitive organic chelation in grassland soils.

Science.gov (United States)

Boiteau, R.; Shaw, J. B.; Paša-Tolić, L.; Koppenaal, D.; Jansson, J.

2017-12-01

Many elements are scarcely soluble in aqueous conditions found in high pH environments, such as calcareous grassland soils, unless complexed to strong binding organic ligands. To overcome this limitation, some plants and microbes produce chelators that solubilize micronutrient metals such as Fe, Ni, Cu, and Zn from mineral phases. These complexes are taken up by organisms via specific membrane receptors, thereby differentially impacting the bioavailability of these metals to the plant and microbial community. Although the importance of these chelation strategies for individual organisms has been well established, little is known about which pathways coexist within rhizosphere microbiomes or how they interact and compete for metal binding. Identifying these metallo-organic species within natural ecosystems has remained a formidable analytical challenge due to the vast diversity of compounds and poorly defined metabolic processes in complex soil matrix. Herein, we employed recently developed liquid chromatography (LC) mass spectrometry (MS) methods to characterize the speciation of water-soluble dissolved trace elements (Fe, Ni, Cu, and Zn) from Kansas Prairie soil. Both plant and fungal chelators were identified, revealing compound-specific patterns of chelation to biologically essential metals. Numerous metabolites typically implicated in plant iron acquisition and homeostasis, including mugineic acids, deoxymugineic acid, nicotianamine, and hydroxynicotianamine, dominated the speciation of divalent metals such as Ni, Cu, and Zn (2-57 pmol / g soil). In contrast, the fungal siderophore ferricrocine bound comparatively more trivalent Fe (9pmol / g soil). These results define biochemical pathways that underpin the regulation of metals in the grassland rhizosphere. They also raise new questions about the competition of these compounds for metal binding and their bioavailability to different members of the rhizosphere population.

Speciation, in the nuclear fuel cycle by spectroscopic techniques

International Nuclear Information System (INIS)

Colette, S.; Plancque, G.; Allain, F.; Lamouroux, C.; Steiner, V.; Amekraz, B.; Moulin, C.

2000-01-01

New analytical techniques allowing to perform speciation in the framework of the nuclear fuel cycle are more and more needed. They have to be selective (since matrix encountered are very complex), sensitive (in order to work at representative concentration and below solubility limit), as well as non intrusive (in order to keep the image of the real solution). Among them, laser-based analytical techniques present these advantages together with the possibility to perform remote measurements via fiber optics. Hence, Time-Resolved Laser-Induced Fluorescence (TRLIF) has been used for actinides/lanthanides interaction and speciation studies in inorganic and organic matrices from the reprocessing to waste storage. Moreover, new ion detection methods such as Electro-Spray - Mass Spectrometry (ES-MS) seems promising for speciation studies. Hence, it is the first time that it is possible to directly couple a liquid at atmospheric pressure to a mass detection working at reduced pressure with a soft mode of ionisation that should allow to give informations on chemical species present. Principle, advantages and limitations as well as results obtained with the use of TRLIF and ES-MS on different systems of interest including actinides, lanthanides, fission products in interaction with simple organic molecules to very complex structure will be presented and discussed. (authors)

Speciation, in the nuclear fuel cycle by spectroscopic techniques

Energy Technology Data Exchange (ETDEWEB)

Colette, S.; Plancque, G.; Allain, F.; Lamouroux, C.; Steiner, V.; Amekraz, B.; Moulin, C. [CEA/Saclay, Dept, des Procedes d' Enrichissement (DPE), 91 - Gif-sur-Yvette (France)

2000-07-01

New analytical techniques allowing to perform speciation in the framework of the nuclear fuel cycle are more and more needed. They have to be selective (since matrix encountered are very complex), sensitive (in order to work at representative concentration and below solubility limit), as well as non intrusive (in order to keep the image of the real solution). Among them, laser-based analytical techniques present these advantages together with the possibility to perform remote measurements via fiber optics. Hence, Time-Resolved Laser-Induced Fluorescence (TRLIF) has been used for actinides/lanthanides interaction and speciation studies in inorganic and organic matrices from the reprocessing to waste storage. Moreover, new ion detection methods such as Electro-Spray - Mass Spectrometry (ES-MS) seems promising for speciation studies. Hence, it is the first time that it is possible to directly couple a liquid at atmospheric pressure to a mass detection working at reduced pressure with a soft mode of ionisation that should allow to give informations on chemical species present. Principle, advantages and limitations as well as results obtained with the use of TRLIF and ES-MS on different systems of interest including actinides, lanthanides, fission products in interaction with simple organic molecules to very complex structure will be presented and discussed. (authors)

Contribution of neutron activation analysis and radioanalytical techniques to trace element speciation in environmental analysis

International Nuclear Information System (INIS)

Gallorini, M.; Orvini, E.; Sabbioni, E.; Pietra, R.

1984-01-01

The feasibility of the NAA in contributing to trace element speciation in environmental and biological samples is shown by a few selected applications. They are: (i) the determination of different species of vanadium, arsenic and selenium in freshwater. The pre-irradiation treatments in which the different chemical species are selectively isolated are critically evaluated. Problems arising from possible contaminations or losses and from blanks are discussed; (ii) the use of NAA in metallobiochemical speciation once biochemical methods of cellular fractionation for the isolation of metallobiocomplexes are developed. Examples concern the biochemical speciation of vanadium in human blood and the development of a method for speciation of inorganic and organic arsenic compounds in biological samples. The use of radioanalytical techniques in developing the separation procedures of different trace metal chemical and biochemical species is also briefly discussed. 24 references, 5 figures, 4 tables

Genomic support for speciation and specificity of baculoviruses

NARCIS (Netherlands)

Jakubowska, A.K.

2010-01-01

Keywords: baculovirus, insects, speciation, genomics, phylogeny, host specificity

The Baculoviridae comprise a large family of double-stranded DNA viruses infecting
arthropods. In this thesis two baculoviruses, Leucoma salicis nucleopolyhedrovirus
(LesaNPV) and Agrotis

Effects of pH and Competing Anions on the Solution Speciation of Arsenic by Ion Exchange Resins

Energy Technology Data Exchange (ETDEWEB)

Impellitteri, Christopher A.; Ryan, JAmes A.; Al-Abed, Souhail R.; Scheckel, Kirk G.; Randall, Paul M.; Richardson, Collin A.

2003-03-26

Anion-exchange resins (AER) are used to differentiate As(V) and As(III) by retaining As(V) and allowing As(III) to pass through. AERs allow rapid speciation of As in the field which precludes the effects of sample preservation on As speciation. Aqueous environmental samples contain anions that may interfere with the speciation of As. This study compares the speciation of As by two commercially available AERs. A silica-based AER was selected for further study. As(V) and As(III) were passed through the AER in the presence of NO3 -, SO4 2-, HPO4 2-, Cl- and HCO3 - at pH 4, 6 and 8. Recoveries of As species in mixed systems range between 90 to 100%. Breakthrough curves for As(V) are presented which allow calculation of loading rates. HPO4 2- has the greatest effect on the speciation of As by AER.

Computer codes for RF cavity design

International Nuclear Information System (INIS)

Ko, K.

1992-01-01

In RF cavity design, numerical modeling is assuming an increasingly important role with the help of sophisticated computer codes and powerful yet affordable computers. A description of the cavity codes in use in the accelerator community has been given previously. The present paper will address the latest developments and discuss their applications to cavity tuning and matching problems. (Author) 8 refs., 10 figs

Performance measures for transform data coding.

Science.gov (United States)

Pearl, J.; Andrews, H. C.; Pratt, W. K.

1972-01-01

This paper develops performance criteria for evaluating transform data coding schemes under computational constraints. Computational constraints that conform with the proposed basis-restricted model give rise to suboptimal coding efficiency characterized by a rate-distortion relation R(D) similar in form to the theoretical rate-distortion function. Numerical examples of this performance measure are presented for Fourier, Walsh, Haar, and Karhunen-Loeve transforms.

Thermal hydraulic codes for LWR safety analysis - present status and future perspective

Energy Technology Data Exchange (ETDEWEB)

Staedtke, H. [Commission of the European Union, Ispra (Italy)

1997-07-01

The aim of the present paper is to give a review on the current status and future perspective of present best-estimate Thermal Hydraulic codes. Reference is made to internationally well-established codes which have reached a certain state of maturity. The first part of the paper deals with the common basic code features with respect to the physical modelling and their numerical methods used to describe complex two-phase flow and heat transfer processes. The general predictive capabilities are summarized identifying some remaining code deficiencies and their underlying limitations. The second part discusses various areas including physical modelling, numerical techniques and informatic structure where the codes could be substantially improved.

Thermal hydraulic codes for LWR safety analysis - present status and future perspective

International Nuclear Information System (INIS)

Staedtke, H.

1997-01-01

The aim of the present paper is to give a review on the current status and future perspective of present best-estimate Thermal Hydraulic codes. Reference is made to internationally well-established codes which have reached a certain state of maturity. The first part of the paper deals with the common basic code features with respect to the physical modelling and their numerical methods used to describe complex two-phase flow and heat transfer processes. The general predictive capabilities are summarized identifying some remaining code deficiencies and their underlying limitations. The second part discusses various areas including physical modelling, numerical techniques and informatic structure where the codes could be substantially improved

Analysis of source term aspects in the experiment Phebus FPT1 with the MELCOR and CFX codes

Energy Technology Data Exchange (ETDEWEB)

Martin-Fuertes, F. [Universidad Politecnica de Madrid, UPM, Nuclear Engineering Department, Jose Gutierrez Abascal 2, 28006 Madrid (Spain)]. E-mail: francisco.martinfuertes@upm.es; Barbero, R. [Universidad Politecnica de Madrid, UPM, Nuclear Engineering Department, Jose Gutierrez Abascal 2, 28006 Madrid (Spain); Martin-Valdepenas, J.M. [Universidad Politecnica de Madrid, UPM, Nuclear Engineering Department, Jose Gutierrez Abascal 2, 28006 Madrid (Spain); Jimenez, M.A. [Universidad Politecnica de Madrid, UPM, Nuclear Engineering Department, Jose Gutierrez Abascal 2, 28006 Madrid (Spain)

2007-03-15

Several aspects related to the source term in the Phebus FPT1 experiment have been analyzed with the help of MELCOR 1.8.5 and CFX 5.7 codes. Integral aspects covering circuit thermalhydraulics, fission product and structural material release, vapours and aerosol retention in the circuit and containment were studied with MELCOR, and the strong and weak points after comparison to experimental results are stated. Then, sensitivity calculations dealing with chemical speciation upon release, vertical line aerosol deposition and steam generator aerosol deposition were performed. Finally, detailed calculations concerning aerosol deposition in the steam generator tube are presented. They were obtained by means of an in-house code application, named COCOA, as well as with CFX computational fluid dynamics code, in which several models for aerosol deposition were implemented and tested, while the models themselves are discussed.

Speciation of Metals and Assessment of Contamination in Surface Sediments from Daya Bay, South China Sea

Directory of Open Access Journals (Sweden)

Jie Yang

2014-12-01

Full Text Available The contents, speciation, source factors and potential ecological risks of the selected metals (Cr, Ni, Cu, Pb, Zn, Cd and As were analyzed in surface sediments from Daya Bay (DYB. The results show that, with the exception of Pb, metal concentrations have decreased at all sites over the past decade. The distribution features of these concentrations represent a ring shape that descends from shore to bay by varying degrees. Speciation analysis showed that Cr, Ni, Cu, Zn and As exist mainly in the residual fraction and, thus, are of low bioavailability, while Cd and Pb were found to be abundant in the non-residual fraction and, thus, have high potential mobility. The ratio of heavy metals in non-residual form in descending order is Pb (78.83%, Cd (78.65%, Cu (48.54%, Zn (48.10%, Ni (38.31%, Cr (28.43% and As (27.76%. The ratio of Pb content is the highest, meaning the highest mobility of Pb. The metals’ potential ecological risks to the environment were also assessed using the methods of the mean effect range-median quotient and the criteria of risk assessment code. The results showed that Cd presents the highest risk, and Pb and Cu are generally considered to be medium risks in the sub-basins of Daya Bay. The principal component analysis (PCA revealed that natural coastal weathering and erosion of rock caused the highest input, followed by mariculture and industrial wastewater and, finally, domestic sewage discharge.

Numerical code for fitting radial emission profile of a shell supernova remnant: Application

Directory of Open Access Journals (Sweden)

Opsenica Slobodan

2011-01-01

Full Text Available We present IDL (Interactive Data Language codes for fitting a theoretical emission profile of a shell supernova remnant (SNR to the mean profile of an SNR obtained from radio observations. Two considered theoretical models are: 1 a shell with constant emissivity and 2 a synchrotron shell with radially aligned magnetic field. The codes were applied to several observed supernova remnants. Good results are obtained in five considered cases, which justify the use of our code for remnants that are bright (so that observational errors are not large and spherically symmetric enough.

HYDROCOIN [HYDROlogic COde INtercomparison] Level 1: Benchmarking and verification test results with CFEST [Coupled Fluid, Energy, and Solute Transport] code: Draft report

International Nuclear Information System (INIS)

Yabusaki, S.; Cole, C.; Monti, A.M.; Gupta, S.K.

1987-04-01

Part of the safety analysis is evaluating groundwater flow through the repository and the host rock to the accessible environment by developing mathematical or analytical models and numerical computer codes describing the flow mechanisms. This need led to the establishment of an international project called HYDROCOIN (HYDROlogic COde INtercomparison) organized by the Swedish Nuclear Power Inspectorate, a forum for discussing techniques and strategies in subsurface hydrologic modeling. The major objective of the present effort, HYDROCOIN Level 1, is determining the numerical accuracy of the computer codes. The definition of each case includes the input parameters, the governing equations, the output specifications, and the format. The Coupled Fluid, Energy, and Solute Transport (CFEST) code was applied to solve cases 1, 2, 4, 5, and 7; the Finite Element Three-Dimensional Groundwater (FE3DGW) Flow Model was used to solve case 6. Case 3 has been ignored because unsaturated flow is not pertinent to SRP. This report presents the Level 1 results furnished by the project teams. The numerical accuracy of the codes is determined by (1) comparing the computational results with analytical solutions for cases that have analytical solutions (namely cases 1 and 4), and (2) intercomparing results from codes for cases which do not have analytical solutions (cases 2, 5, 6, and 7). Cases 1, 2, 6, and 7 relate to flow analyses, whereas cases 4 and 5 require nonlinear solutions. 7 refs., 71 figs., 9 tabs

Analytical validation of the CACECO containment analysis code

International Nuclear Information System (INIS)

Peak, R.D.

1979-08-01

The CACECO containment analysis code was developed to predict the thermodynamic responses of LMFBR containment facilities to a variety of accidents. This report covers the verification of the CACECO code by problems that can be solved by hand calculations or by reference to textbook and literature examples. The verification concentrates on the accuracy of the material and energy balances maintained by the code and on the independence of the four cells analyzed by the code so that the user can be assured that the code analyses are numerically correct and independent of the organization of the input data submitted to the code

Development of the vacuum system pressure responce analysis code PRAC

International Nuclear Information System (INIS)

Horie, Tomoyoshi; Kawasaki, Kouzou; Noshiroya, Shyoji; Koizumi, Jun-ichi.

1985-03-01

In this report, we show the method and numerical results of the vacuum system pressure responce analysis code. Since fusion apparatus is made up of many vacuum components, it is required to analyze pressure responce at any points of the system when vacuum system is designed or evaluated. For that purpose evaluating by theoretical solution is insufficient. Numerical analysis procedure such as finite difference method is usefull. In the PRAC code (Pressure Responce Analysis Code), pressure responce is obtained solving derivative equations which is obtained from the equilibrium relation of throughputs and contain the time derivative of pressure. As it considers both molecular and viscous flows, the coefficients of the equation depend on the pressure and the equations become non-linear. This non-linearity is treated as piece-wise linear within each time step. Verification of the code is performed for the simple problems. The agreement between numerical and theoretical solutions is good. To compare with the measured results, complicated model of gas puffing system is analyzed. The agreement is well for practical use. This code will be a useful analytical tool for designing and evaluating vacuum systems such as fusion apparatus. (author)

Hybridization masks speciation in the evolutionary history of the Galápagos marine iguana

Science.gov (United States)

MacLeod, Amy; Rodríguez, Ariel; Vences, Miguel; Orozco-terWengel, Pablo; García, Carolina; Trillmich, Fritz; Gentile, Gabriele; Caccone, Adalgisa; Quezada, Galo; Steinfartz, Sebastian

2015-01-01

The effects of the direct interaction between hybridization and speciation—two major contrasting evolutionary processes—are poorly understood. We present here the evolutionary history of the Galápagos marine iguana (Amblyrhynchus cristatus) and reveal a case of incipient within-island speciation, which is paralleled by between-island hybridization. In-depth genome-wide analyses suggest that Amblyrhynchus diverged from its sister group, the Galápagos land iguanas, around 4.5 million years ago (Ma), but divergence among extant populations is exceedingly young (less than 50 000 years). Despite Amblyrhynchus appearing as a single long-branch species phylogenetically, we find strong population structure between islands, and one case of incipient speciation of sister lineages within the same island—ostensibly initiated by volcanic events. Hybridization between both lineages is exceedingly rare, yet frequent hybridization with migrants from nearby islands is evident. The contemporary snapshot provided by highly variable markers indicates that speciation events may have occurred throughout the evolutionary history of marine iguanas, though these events are not visible in the deeper phylogenetic trees. We hypothesize that the observed interplay of speciation and hybridization might be a mechanism by which local adaptations, generated by incipient speciation, can be absorbed into a common gene pool, thereby enhancing the evolutionary potential of the species as a whole. PMID:26041359

Moran model as a dynamical process on networks and its implications for neutral speciation

Science.gov (United States)

de Aguiar, Marcus A. M.; Bar-Yam, Yaneer

2011-03-01

In population genetics, the Moran model describes the neutral evolution of a biallelic gene in a population of haploid individuals subjected to mutations. We show in this paper that this model can be mapped into an influence dynamical process on networks subjected to external influences. The panmictic case considered by Moran corresponds to fully connected networks and can be completely solved in terms of hypergeometric functions. Other types of networks correspond to structured populations, for which approximate solutions are also available. This approach to the classic Moran model leads to a relation between regular networks based on spatial grids and the mechanism of isolation by distance. We discuss the consequences of this connection for topopatric speciation and the theory of neutral speciation and biodiversity. We show that the effect of mutations in structured populations, where individuals can mate only with neighbors, is greatly enhanced with respect to the panmictic case. If mating is further constrained by genetic proximity between individuals, a balance of opposing tendencies takes place: increasing diversity promoted by enhanced effective mutations versus decreasing diversity promoted by similarity between mates. Resolution of large enough opposing tendencies occurs through speciation via pattern formation. We derive an explicit expression that indicates when speciation is possible involving the parameters characterizing the population. We also show that the time to speciation is greatly reduced in comparison with the panmictic case.

Evidence for nonallopatric speciation among closely related sympatric Heliotropium species in the Atacama Desert.

Science.gov (United States)

Luebert, Federico; Jacobs, Pit; Hilger, Hartmut H; Muller, Ludo A H

2014-02-01

The genetic structure of populations of closely related, sympatric species may hold the signature of the geographical mode of the speciation process. In fully allopatric speciation, it is expected that genetic differentiation between species is homogeneously distributed across the genome. In nonallopatric speciation, the genomes may remain undifferentiated to a large extent. In this article, we analyzed the genetic structure of five sympatric species from the plant genus Heliotropium in the Atacama Desert. We used amplified fragment length polymorphisms (AFLPs) to characterize the genetic structure of these species and evaluate their genetic differentiation as well as the number of loci subject to positive selection using divergence outlier analysis (DOA). The five species form distinguishable groups in the genetic space, with zones of overlap, indicating that they are possibly not completely isolated. Among-species differentiation accounts for 35% of the total genetic differentiation (F ST = 0.35), and F ST between species pairs is positively correlated with phylogenetic distance. DOA suggests that few loci are subject to positive selection, which is in line with a scenario of nonallopatric speciation. These results support the idea that sympatric species of Heliotropium sect. Cochranea are under an ongoing speciation process, characterized by a fluctuation of population ranges in response to pulses of arid and humid periods during Quaternary times.

Numerical study of nonspherical black hole accretion

International Nuclear Information System (INIS)

Hawley, J.F.

1984-01-01

This thesis describes in detail a two-dimensional, axisymmetric computer code for calculating fully relativistic ideal gas hydrodynamics around a Kerr black hole. The aim is to study fully dynamic inviscid fluid accretion onto black holes, as well as to study the evolution and development of nonlinear instabilities in pressure supported accretion disks. In order to fully calibrate and document the code, certain analytic solutions for shock tubes and special accretion flows are derived; these solutions form the basis for code testing. The numerical techniques used are developed and discussed. A variety of alternate differencing schemes are compared on an analytic test bed. Some discussion is devoted to general issues in finite differencing. The working code is calibrated using analytically solvable accretion problems, including the radial accretion of dust and of fluid with pressure (Bondi accretion). Two dimensional test problems include the spiraling infall of low angular momentum fluid, the formation of a pressure supported torus, and the stable evolution of a torus. A series of numerical models are discussed and illustrated with selected plots

Assessment of uranium and selenium speciation in human and bacterial biological models to probe changes in their structural environment

International Nuclear Information System (INIS)

Avoscan, L.; Milgram, S.; Untereiner, G.; Collins, R.; Khodja, H.; Carriere, M.; Gouget, B.; Coves, J.; Hazemann, J.L.

2009-01-01

This study illustrates the potential of physicochemical techniques to speciate uranium (U) and selenium (Se) in biological samples. Speciation, defined he0re as the study of structural environment, of both toxic elements, was characterized at several levels in biological media and directly in human cells or bacteria once the metal(loid)s were internalized. External speciation that is extracellular speciation in culture media was predicted by thermodynamic equilibrium computer modelling using the JChess software and validated by spectroscopic measurements (XANES and EXAFS). Internal speciation that is intracellular speciation in eukaryotic and prokaryotic cells was studied in vitro with a soil bacterium Cupriavidus metallidurans CH34 and ROS 17/2.8 osteoblasts, human cells responsible for bone formation. XANES, EXAFS, HPLC-ICP-MS and SDS-PAGE coupled to particle induced X-ray emission (PIXE) permitted the identification and quantification of complexes formed with organic or inorganic molecules and/or larger proteins. (orig.)

Assessment of uranium and selenium speciation in human and bacterial biological models to probe changes in their structural environment

Energy Technology Data Exchange (ETDEWEB)

Avoscan, L.; Milgram, S.; Untereiner, G.; Collins, R.; Khodja, H.; Carriere, M.; Gouget, B. [Lab. Pierre Sue, CEA-CNRS UMR 9956, CEA/Saclay, Gif-sur-Yvette (France); Coves, J. [Inst. de Biologie Structurale - J.-P. Ebel, Lab. des Proteines Membranaires, Grenoble (France); Hazemann, J.L. [Lab. de Geophysique Interne et Tectonopbysique, UMR CNRS/Univ. Joseph Fourier, Saint-Martin-D' Heres (France)

2009-07-01

This study illustrates the potential of physicochemical techniques to speciate uranium (U) and selenium (Se) in biological samples. Speciation, defined he0re as the study of structural environment, of both toxic elements, was characterized at several levels in biological media and directly in human cells or bacteria once the metal(loid)s were internalized. External speciation that is extracellular speciation in culture media was predicted by thermodynamic equilibrium computer modelling using the JChess software and validated by spectroscopic measurements (XANES and EXAFS). Internal speciation that is intracellular speciation in eukaryotic and prokaryotic cells was studied in vitro with a soil bacterium Cupriavidus metallidurans CH34 and ROS 17/2.8 osteoblasts, human cells responsible for bone formation. XANES, EXAFS, HPLC-ICP-MS and SDS-PAGE coupled to particle induced X-ray emission (PIXE) permitted the identification and quantification of complexes formed with organic or inorganic molecules and/or larger proteins. (orig.)

QUARTZ: a numerical simulation of an asymmetric electrostatic accelerator

International Nuclear Information System (INIS)

Wooten, J.W.; Drooks, L.J.; McCollough, D.H.; McGaffey, R.W.; Whealton, J.H.

1979-01-01

The physics and numerical aspects of the development of the computer code QUARTZ are given. This code includes the (1) use of a finite element code to obtain solutions of Poisson's equation in an asymmetric, three-dimensional volume; (2) inclusion of space charge neutralization by electrons; and (3) inclusion of ion space charge through an iterative procedure

Speciation, phenotypic variation and plasticity: what can endocrine disruptors tell us?

Science.gov (United States)

Ayala-García, Braulio; López-Santibáñez Guevara, Marta; Marcos-Camacho, Lluvia I; Fuentes-Farías, Alma L; Meléndez-Herrera, Esperanza; Gutiérrez-Ospina, Gabriel

2013-01-01

Phenotype variability, phenotypic plasticity, and the inheritance of phenotypic traits constitute the fundamental ground of processes such as individuation, individual and species adaptation and ultimately speciation. Even though traditional evolutionary thinking relies on genetic mutations as the main source of intra- and interspecies phenotypic variability, recent studies suggest that the epigenetic modulation of gene transcription and translation, epigenetic memory, and epigenetic inheritance are by far the most frequent reliable sources of transgenerational variability among viable individuals within and across organismal species. Therefore, individuation and speciation should be considered as nonmutational epigenetic phenomena.

Speciation, Phenotypic Variation and Plasticity: What Can Endocrine Disruptors Tell Us?

Directory of Open Access Journals (Sweden)

Braulio Ayala-García

2013-01-01

Full Text Available Phenotype variability, phenotypic plasticity, and the inheritance of phenotypic traits constitute the fundamental ground of processes such as individuation, individual and species adaptation and ultimately speciation. Even though traditional evolutionary thinking relies on genetic mutations as the main source of intra- and interspecies phenotypic variability, recent studies suggest that the epigenetic modulation of gene transcription and translation, epigenetic memory, and epigenetic inheritance are by far the most frequent reliable sources of transgenerational variability among viable individuals within and across organismal species. Therefore, individuation and speciation should be considered as nonmutational epigenetic phenomena.

A role for a neo-sex chromosome in stickleback speciation

Science.gov (United States)

Kitano, Jun; Ross, Joseph A.; Mori, Seiichi; Kume, Manabu; Jones, Felicity C.; Chan, Yingguang F.; Absher, Devin M.; Grimwood, Jane; Schmutz, Jeremy; Myers, Richard M.; Kingsley, David M.; Peichel, Catherine L.

2009-01-01

Sexual antagonism, or conflict between the sexes, has been proposed as a driving force in both sex chromosome turnover and speciation. Although closely related species often have different sex chromosome systems, it is unknown whether sex chromosome turnover contributes to the evolution of reproductive isolation between species. In this study, we show that a newly evolved sex chromosome harbours genes that contribute to speciation in threespine stickleback fish (Gasterosteus aculeatus). We first identified a neo-sex chromosome system found only in one member of a sympatric species pair in Japan. We then performed genetic linkage mapping of male-specific traits important for reproductive isolation between the Japanese species pair. The neo-X chromosome harbours loci for male courtship display traits that contribute to behavioural isolation, while the ancestral X chromosome contains loci for both behavioural isolation and hybrid male sterility. Our work not only provides strong evidence for a large-X effect on reproductive isolation in a vertebrate system, but also provides direct evidence that a young neo-X chromosome contributes to reproductive isolation between closely related species. Our data suggest that sex chromosome turnover might play a greater role in speciation than previously appreciated. PMID:19783981

Pb Speciation Data to Estimate Lead Bioavailability to Quail

Data.gov (United States)

U.S. Environmental Protection Agency — Linear combination fitting data for lead speciation of soil samples evaluated through an in-vivo/in-vitro correlation for quail exposure. This dataset is associated...

Transuranium element behavior in the environment: What speciation studies can tell us

International Nuclear Information System (INIS)

Cleveland, J.M.

1989-01-01

Some of the transuranium elements - especially plutonium - can exist in the environment in several different oxidation states which differ chemically from one another as much as if they were different elements. Hence an understanding of the environmental chemistry of these elements requires knowledge of their oxidation-state distribution, or speciation, under a variety of realistic conditions. Such studies are in their infancy, but already several chemical speciation methods have yielded results indicating the uniqueness of transuranic environment chemistry; for example, dioxoplutonium(V), which is unstable in the acid solutions employed in laboratory and processing plant, is often the most prevalent plutonium oxidation state in natural waters. More sensitive and less invasive physical speciation methods under development will hopefully permit the extension of these studies to a wider variety of environmental conditions and to determinations of sorbed species necessary for an understanding of sorption processes

Guidelines for terms related to chemical speciations and fractionation of elements : definitions, structural aspects, and methodological approaches (IUPAC Recommendations 2000)

NARCIS (Netherlands)

Templeton, D.M.; Ariese, F.; Cornelis, R.; Danielsson, L.G.; Muntau, H.; Leeuwen, van H.P.; Lobínski, R.

2000-01-01

This paper presents definitions of concepts related to speciation of elements, more particularly speciation analysis and chemical species. Fractionation is distinguished from speciation analysis, and a general outline of fractionation procedures is given. We propose a categorization of species

Characterizing Zinc Speciation in Soils from a Smelter-Affected Boreal Forest Ecosystem.

Science.gov (United States)

Hamilton, Jordan G; Farrell, Richard E; Chen, Ning; Feng, Renfei; Reid, Joel; Peak, Derek

2016-03-01

HudBay Minerals, Inc., has mined and/or processed Zn and Cu ore in Flin Flon, MB, Canada, since the 1930s. The boreal forest ecosystem and soil surrounding these facilities have been severely impacted by mixed metal contamination and HSO deposition. Zinc is one of the most prevalent smelter-derived contaminants and has been identified as a key factor that may be limiting revegetation. Metal toxicity is related to both total concentrations and speciation; therefore, X-ray absorption spectroscopy and X-ray fluorescence mapping were used to characterize Zn speciation in soils throughout the most heavily contaminated areas of the landscape. Zinc speciation was linked to two distinct soil types. Group I soils consist of exposed soils in weathered positions of bedrock outcrops with Zn present primarily as franklinite, a (ZnFeO) spinel mineral. Group II soils are stabilized by an invasive metal-tolerant grass species, with Zn found as a mixture of octahedral (Fe oxides) and tetrahedral Mn oxides) adsorption complexes with a franklinite component. Soil erosion influences Zn speciation through the redistribution of Zn and soil particulates from Group I landscape positions to Group II soils. Despite Group II soils having the highest concentrations of CaCl-extractable Zn, they support metal-tolerant plant growth. The metal-tolerant plants are probably preferentially colonizing these areas due to better soil and nutrient conditions as a result of soil deposition from upslope Group I areas. Zinc concentration and speciation appears to not influence the colonization by metal-tolerant grasses, but the overall soil properties and erosion effects prevent the revegetation by native boreal forest species. Copyright © by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Inc.

Development of steam explosion simulation code JASMINE

Energy Technology Data Exchange (ETDEWEB)

Moriyama, Kiyofumi; Yamano, Norihiro; Maruyama, Yu; Kudo, Tamotsu; Sugimoto, Jun [Japan Atomic Energy Research Inst., Tokai, Ibaraki (Japan). Tokai Research Establishment; Nagano, Katsuhiro; Araki, Kazuhiro

1995-11-01

A steam explosion is considered as a phenomenon which possibly threatens the integrity of the containment vessel of a nuclear power plant in a severe accident condition. A numerical calculation code JASMINE (JAeri Simulator for Multiphase INteraction and Explosion) purposed to simulate the whole process of steam explosions has been developed. The premixing model is based on a multiphase flow simulation code MISTRAL by Fuji Research Institute Co. In JASMINE code, the constitutive equations and the flow regime map are modified for the simulation of premixing related phenomena. The numerical solution method of the original code is succeeded, i.e. the basic equations are discretized semi-implicitly, BCGSTAB method is used for the matrix solver to improve the stability and convergence, also TVD scheme is applied to capture a steep phase distribution accurately. Test calculations have been performed for the conditions correspond to the experiments by Gilbertson et al. and Angelini et al. in which mixing of solid particles and water were observed in iso-thermal condition and with boiling, respectively. (author).

Development of steam explosion simulation code JASMINE

International Nuclear Information System (INIS)

Moriyama, Kiyofumi; Yamano, Norihiro; Maruyama, Yu; Kudo, Tamotsu; Sugimoto, Jun; Nagano, Katsuhiro; Araki, Kazuhiro.

1995-11-01

A steam explosion is considered as a phenomenon which possibly threatens the integrity of the containment vessel of a nuclear power plant in a severe accident condition. A numerical calculation code JASMINE (JAeri Simulator for Multiphase INteraction and Explosion) purposed to simulate the whole process of steam explosions has been developed. The premixing model is based on a multiphase flow simulation code MISTRAL by Fuji Research Institute Co. In JASMINE code, the constitutive equations and the flow regime map are modified for the simulation of premixing related phenomena. The numerical solution method of the original code is succeeded, i.e. the basic equations are discretized semi-implicitly, BCGSTAB method is used for the matrix solver to improve the stability and convergence, also TVD scheme is applied to capture a steep phase distribution accurately. Test calculations have been performed for the conditions correspond to the experiments by Gilbertson et al. and Angelini et al. in which mixing of solid particles and water were observed in iso-thermal condition and with boiling, respectively. (author)

Optimising Boltzmann codes for the PLANCK era

International Nuclear Information System (INIS)

Hamann, Jan; Lesgourgues, Julien; Balbi, Amedeo; Quercellini, Claudia

2009-01-01

High precision measurements of the Cosmic Microwave Background (CMB) anisotropies, as can be expected from the PLANCK satellite, will require high-accuracy theoretical predictions as well. One possible source of theoretical uncertainty is the numerical error in the output of the Boltzmann codes used to calculate angular power spectra. In this work, we carry out an extensive study of the numerical accuracy of the public Boltzmann code CAMB, and identify a set of parameters which determine the error of its output. We show that at the current default settings, the cosmological parameters extracted from data of future experiments like Planck can be biased by several tenths of a standard deviation for the six parameters of the standard ΛCDM model, and potentially more seriously for extended models. We perform an optimisation procedure that leads the code to achieve sufficient precision while at the same time keeping the computation time within reasonable limits. Our conclusion is that the contribution of numerical errors to the theoretical uncertainty of model predictions is well under control—the main challenges for more accurate calculations of CMB spectra will be of an astrophysical nature instead

A methodology for the rigorous verification of plasma simulation codes

Science.gov (United States)

Riva, Fabio

2016-10-01

The methodology used to assess the reliability of numerical simulation codes constitutes the Verification and Validation (V&V) procedure. V&V is composed by two separate tasks: the verification, which is a mathematical issue targeted to assess that the physical model is correctly solved, and the validation, which determines the consistency of the code results, and therefore of the physical model, with experimental data. In the present talk we focus our attention on the verification, which in turn is composed by the code verification, targeted to assess that a physical model is correctly implemented in a simulation code, and the solution verification, that quantifies the numerical error affecting a simulation. Bridging the gap between plasma physics and other scientific domains, we introduced for the first time in our domain a rigorous methodology for the code verification, based on the method of manufactured solutions, as well as a solution verification based on the Richardson extrapolation. This methodology was applied to GBS, a three-dimensional fluid code based on a finite difference scheme, used to investigate the plasma turbulence in basic plasma physics experiments and in the tokamak scrape-off layer. Overcoming the difficulty of dealing with a numerical method intrinsically affected by statistical noise, we have now generalized the rigorous verification methodology to simulation codes based on the particle-in-cell algorithm, which are employed to solve Vlasov equation in the investigation of a number of plasma physics phenomena.

Biogeography of speciation in Cenozoic marine ostracoda: the role of climatic change

Energy Technology Data Exchange (ETDEWEB)

Cronin, T.M.

1985-01-01

Evolutionary theory holds that geographic isolation of populations with its resultant reproductive isolation is an important factor in the origin of new species. Climatic change alters species' biogeography by creating and eliminating barriers that affect gene flow between populations. For benthic organisms such as shallow marine ostracodes, thermal gradients at biogeographic province boundaries and the area of continental shelf are factors affected by climatic and associated sea level changes. Studies of Cenozoic marine ostracodes show that allopatric speciation does not account for paleobiogeographic patterns of species subjected to climatic change. Studies of 127 endemic species from middle latitudes of the western Atlantic show that most speciation events in temperature and subtropical taxa are, in the zoogeographic sense, sympatric or parapatric-clinal and are induced by oceanographic changes related to climatic events rather than geographic isolation of populations. Most ostracode species in middle latitudes are adapted to frequent, cyclical climatic changes typical of these regions and originated during rare periods of major climatic transition. High-latitude arctic-subarctic genera such as Finmarchinella have circumpolar distributions. A parapatric-clinal model accounts for speciation patterns observed in some high-latitude and tropical taxa. However the dynamic nature of thermal gradients and species' biogeography during climatic change renders questionable the controversial distinction between parapatric and allopatric-peripatric speciation models.

Benchmarking the Multidimensional Stellar Implicit Code MUSIC

Science.gov (United States)

Goffrey, T.; Pratt, J.; Viallet, M.; Baraffe, I.; Popov, M. V.; Walder, R.; Folini, D.; Geroux, C.; Constantino, T.

2017-04-01

We present the results of a numerical benchmark study for the MUltidimensional Stellar Implicit Code (MUSIC) based on widely applicable two- and three-dimensional compressible hydrodynamics problems relevant to stellar interiors. MUSIC is an implicit large eddy simulation code that uses implicit time integration, implemented as a Jacobian-free Newton Krylov method. A physics based preconditioning technique which can be adjusted to target varying physics is used to improve the performance of the solver. The problems used for this benchmark study include the Rayleigh-Taylor and Kelvin-Helmholtz instabilities, and the decay of the Taylor-Green vortex. Additionally we show a test of hydrostatic equilibrium, in a stellar environment which is dominated by radiative effects. In this setting the flexibility of the preconditioning technique is demonstrated. This work aims to bridge the gap between the hydrodynamic test problems typically used during development of numerical methods and the complex flows of stellar interiors. A series of multidimensional tests were performed and analysed. Each of these test cases was analysed with a simple, scalar diagnostic, with the aim of enabling direct code comparisons. As the tests performed do not have analytic solutions, we verify MUSIC by comparing it to established codes including ATHENA and the PENCIL code. MUSIC is able to both reproduce behaviour from established and widely-used codes as well as results expected from theoretical predictions. This benchmarking study concludes a series of papers describing the development of the MUSIC code and provides confidence in future applications.

Arsenic Speciation and Cadmium Determination in Tobacco Leaves, Ash and Smoke.

Science.gov (United States)

Iwai, Takahiro; Chiba, Koichi; Narukawa, Tomohiro

2016-01-01

The concentrations of arsenic (As) and cadmium (Cd) in the tobacco leaves, ash and smoke of 10 kinds of cigarettes collected from different countries worldwide were determined by ICP-MS after microwave-assisted digestion. Total As and Cd concentrations in the tobacco leaves ranged from 0.20 to 0.63 and 1.8 to 9.9 mg kg(-1), respectively. By the speciation analysis of As in tobacco leaves and ash by HPLC-ICP-MS following acid extraction, arsenite [As(III)] and arsenate [As(V)] were determined and trace amounts of monomethylarsonic acid (MMAA), dimethylarsinic acid (DMAA), trimethylarsine oxide (TMAO), tetramethylarsonium (TeMA) and some unidentified As species were also found. Arsenic speciation for smoke absorbed in an aqueous solution was carried out. The sum of the As species in tobacco leaves, ash and smoke was in good agreement with the result of total As determination in each sample, and the recoveries of speciation were 100 ± 10%. The distributions and the behaviors of As species were clarified.

40 CFR 194.23 - Models and computer codes.

Science.gov (United States)

2010-07-01

... 40 Protection of Environment 24 2010-07-01 2010-07-01 false Models and computer codes. 194.23... General Requirements § 194.23 Models and computer codes. (a) Any compliance application shall include: (1... obtain stable solutions; (iv) Computer models accurately implement the numerical models; i.e., computer...

Numerical analysis of alpha spectra using two different codes

International Nuclear Information System (INIS)

Hurtado, S.; Jimenez-Ramos, M.C.; Villa, M.; Vioque, I.; Manjon, G.; Garcia-Tenorio, R.

2008-01-01

This work presents an intercomparison between commercial software for alpha-particle spectrometry, Genie 2000, and the new free available software, Winalpha, developed by International Atomic Energy Agency (IAEA). In order to compare both codes, different environmental spectra containing plutonium, uranium, thorium and polonium have been analyzed, together with IAEA test alpha spectra. A statistical study was performed in order to evaluate the precision and accuracy in the analyses, and to enhance the confidence in using the software on alpha spectrometric studies

Geochemical computer codes. A review

International Nuclear Information System (INIS)

Andersson, K.

1987-01-01

In this report a review of available codes is performed and some code intercomparisons are also discussed. The number of codes treating natural waters (groundwater, lake water, sea water) is large. Most geochemical computer codes treat equilibrium conditions, although some codes with kinetic capability are available. A geochemical equilibrium model consists of a computer code, solving a set of equations by some numerical method and a data base, consisting of thermodynamic data required for the calculations. There are some codes which treat coupled geochemical and transport modeling. Some of these codes solve the equilibrium and transport equations simultaneously while other solve the equations separately from each other. The coupled codes require a large computer capacity and have thus as yet limited use. Three code intercomparisons have been found in literature. It may be concluded that there are many codes available for geochemical calculations but most of them require a user that us quite familiar with the code. The user also has to know the geochemical system in order to judge the reliability of the results. A high quality data base is necessary to obtain a reliable result. The best results may be expected for the major species of natural waters. For more complicated problems, including trace elements, precipitation/dissolution, adsorption, etc., the results seem to be less reliable. (With 44 refs.) (author)

Development and application of best-estimate LWR safety analysis codes

International Nuclear Information System (INIS)

Reocreux, M.

1997-01-01

This paper is a review of the status and the future orientations of the development and application of best estimate LWR safety analysis codes. The present status of these codes exhibits a large success and almost a complete fulfillment of the objectives which were assigned in the 70s. The applications of Best Estimate codes are numerous and cover a large variety of safety questions. However these applications raised a number of problems. The first ones concern the need to have a better control of the quality of the results. This means requirements on code assessment and on uncertainties evaluation. The second ones concern needs for code development and specifically regarding physical models, numerics, coupling with other codes and programming. The analysis of the orientations for code developments and applications in the next years, shows that some developments should be made without delay in order to solve today questions whereas some others are more long term and should be tested for example in some pilot programmes before being eventually applied in main code development. Each of these development programmes are analyzed in the paper by detailing their main content and their possible interest. (author)

MARG1D: One dimensional outer region matching data code

International Nuclear Information System (INIS)

Tokuda, Shinji; Watanabe, Tomoko.

1995-08-01

A code MARG1D has been developed which computes outer region matching data of the one dimensional Newcomb equation. Matching data play an important role in the resistive (and non ideal) Magneto-hydrodynamic (MHD) stability analysis in a tokamak plasma. The MARG1D code computes matching data by using the boundary value method or by the eigenvalue method. Variational principles are derived for the problems to be solved and a finite element method is applied. Except for the case of marginal stability, the eigenvalue method is equivalent to the boundary value method. However, the eigenvalue method has the several advantages: it is a new method of ideal MHD stability analysis for which the marginally stable state can be identified, and it guarantees numerical stability in computing matching data close to marginal stability. We perform detailed numerical experiments for a model equation with analytical solutions and for the Newcomb equation in the m=1 mode theory. Numerical experiments show that MARG1D code gives the matching data with numerical stability and high accuracy. (author)

Tungsten Speciation in Firing Range Soils

Science.gov (United States)

2011-01-01

satisfactorily, such as: which tungsten mineral phase is present in soil and to what extent is adsorption important in regu- lating soil solution concentrations... soil solution rather than discrete mineral phases. Information provided in this report will assist the following organizations in future decision...the soil solution ERDC TR-11-1 43 must affect tungsten speciation in other ways. The precipitation of soil minerals also would limit tungsten

Multimedia signal coding and transmission

CERN Document Server

Ohm, Jens-Rainer

2015-01-01

This textbook covers the theoretical background of one- and multidimensional signal processing, statistical analysis and modelling, coding and information theory with regard to the principles and design of image, video and audio compression systems. The theoretical concepts are augmented by practical examples of algorithms for multimedia signal coding technology, and related transmission aspects. On this basis, principles behind multimedia coding standards, including most recent developments like High Efficiency Video Coding, can be well understood. Furthermore, potential advances in future development are pointed out. Numerous figures and examples help to illustrate the concepts covered. The book was developed on the basis of a graduate-level university course, and most chapters are supplemented by exercises. The book is also a self-contained introduction both for researchers and developers of multimedia compression systems in industry.

Speciation and Persistence of Dimethoate in the Aquatic Environment

African Journals Online (AJOL)

Speciation and Persistence of Dimethoate in the Aquatic Environment: Characterization in Terms of a Rate Model that Takes Into Account Hydrolysis, Photolysis, Microbial Degradation and Adsorption of the Pesticide by Colloidal and Sediment Particles.

Numerical simulation of the accident of Three Mile Island

International Nuclear Information System (INIS)

Perrin, M.H.; Kastelanski, P.

1981-01-01

The chief object of the present study was to assess the ability of our numerical code for the dynamic behavior of power plants, SICLE, to handle the simulation of small accidents in PWRs. In the first part of the paper the authors introduce the main principles, equations and numerical methods of the code. In the second part those of the elements of Three Mile Island Power Plant which were simulated, the different phases of the accident and the results obtained with the code are described. These results are compared to the values recorded in the plant and generally a good agreement is found (for instance the primary pressure). As a conclusion SICLE is the minimum code for representing accidents such as Three Mile Island; its main advantage lies in its ability to take into account all the elements of the plant which are important in the study

Chromium speciation, bioavailability, uptake, toxicity and detoxification in soil-plant system: A review.

Science.gov (United States)

Shahid, Muhammad; Shamshad, Saliha; Rafiq, Marina; Khalid, Sana; Bibi, Irshad; Niazi, Nabeel Khan; Dumat, Camille; Rashid, Muhammad Imtiaz

2017-07-01

Chromium (Cr) is a potentially toxic heavy metal which does not have any essential metabolic function in plants. Various past and recent studies highlight the biogeochemistry of Cr in the soil-plant system. This review traces a plausible link among Cr speciation, bioavailability, phytouptake, phytotoxicity and detoxification based on available data, especially published from 2010 to 2016. Chromium occurs in different chemical forms (primarily as chromite (Cr(III)) and chromate (Cr(VI)) in soil which vary markedly in term of their biogeochemical behavior. Chromium behavior in soil, its soil-plant transfer and accumulation in different plant parts vary with its chemical form, plant type and soil physico-chemical properties. Soil microbial community plays a key role in governing Cr speciation and behavior in soil. Chromium does not have any specific transporter for its uptake by plants and it primarily enters the plants through specific and non-specific channels of essential ions. Chromium accumulates predominantly in plant root tissues with very limited translocation to shoots. Inside plants, Cr provokes numerous deleterious effects to several physiological, morphological, and biochemical processes. Chromium induces phytotoxicity by interfering plant growth, nutrient uptake and photosynthesis, inducing enhanced generation of reactive oxygen species, causing lipid peroxidation and altering the antioxidant activities. Plants tolerate Cr toxicity via various defense mechanisms such as complexation by organic ligands, compartmentation into the vacuole, and scavenging ROS via antioxidative enzymes. Consumption of Cr-contaminated-food can cause human health risks by inducing severe clinical conditions. Therefore, there is a dire need to monitor biogeochemical behavior of Cr in soil-plant system. Copyright © 2017 Elsevier Ltd. All rights reserved.

Speciation in the Derrida-Higgs model with finite genomes and spatial populations

Science.gov (United States)

de Aguiar, Marcus A. M.

2017-02-01

The speciation model proposed by Derrida and Higgs demonstrated that a sexually reproducing population can split into different species in the absence of natural selection or any type of geographic isolation, provided that mating is assortative and the number of genes involved in the process is infinite. Here we revisit this model and simulate it for finite genomes, focusing on the question of how many genes it actually takes to trigger neutral sympatric speciation. We find that, for typical parameters used in the original model, it takes the order of 105 genes. We compare the results with a similar spatially explicit model where about 100 genes suffice for speciation. We show that when the number of genes is small the species that emerge are strongly segregated in space. For a larger number of genes, on the other hand, the spatial structure of the population is less important and the species distribution overlap considerably.

Numerical analysis of reflood simulation based on a mechanistic, best-estimate, approach by KREWET code

International Nuclear Information System (INIS)

Chun, Moon-Hyun; Jeong, Eun-Soo

1983-01-01

A new computer code entitled KREWET has been developed in an effort to improve the accuracy and applicability of the existing reflood heat transfer simulation computer code. Sample calculations for temperature histories and heat transfer coefficient are made using KREWET code and the results are compared with the predictions of REFLUX, QUEN1D, and the PWR-FLECHT data for various conditions. These show favourable agreement in terms of clad temperature versus time. For high flooding rates (5-15cm/sec) and high pressure (∼413 Kpa), reflood predictions are reasonably well predicted by KREWET code as well as with other codes. For low flooding rates (less than ∼4cm/sec) and low pressure (∼138Kpa), predictions show considerable error in evaluating the rewet position versus time. This observation is common to all the codes examined in the present work

Numerical analysis for reflood simulation based on a mechanistic, best-estimate, approach by KREWET code

International Nuclear Information System (INIS)

Chun, M.-H.; Jeong, E.-S.

1983-01-01

A new computer code entitled KREWET has been developed in an effort to improve the accuracy and applicability of the existing reflood heat transfer simulation computer code. Sample calculations for temperature histories and heat transfer coefficient are made using KREWET code and the results are compared with the predictions of REFLUX, QUENID, and the PWR-FLECHT data for various conditions. These show favorable agreement in terms of clad temperature versus time. For high flooding rates (5-15cm/sec) and high pressure (approx. =413 Kpa), reflood predictions are reasonably well predicted by KREWET code as well as with other codes. For low flooding rates (less than approx. =4cm/sec) and low pressure (approx. =138 Kpa), predictions show considerable error in evaluating the rewet position versus time. This observation is common to all the codes examined in the present work

Trace metal characterization and speciation in geothermal effluent by multiple scanning anodic stripping voltammetry and atomic absorption analysis

Energy Technology Data Exchange (ETDEWEB)

Kowalski, B.R.

1979-05-25

Recent studies have shown geothermal power plants to have a significant environmental impact on the ground water of the area. The heavy metals arsenic and mercury are special problems, as both are concentrated by flora and fauna exposed to the effluent waters. Because the toxicity of these and other metallic pollutants present in geothermal effluent depends on the chemical form, or speciation, of the particular metal, any serious study of the environmental impact of a geothermal development should include studies of trace metal speciation, in addition to trace metal concentration. This proposal details a method for determining metal speciation in dilute waters. The method is based on ion-exchange and backed by atomic absorption spectrometry and multiple scanning anodic stripping voltammetry. Special laboratory studies will be performed on mercury, arsenic and selenium speciation in synthetic geothermal water. The method will be applied to three known geothermal areas in Washington and Oregon, with emphasis on the speciation of mercury, arsenic and selenium in these waters. The computer controlled electrochemical instrumentation was built and tested. Using this instrumentation, a new experimental procedure was developed to determine the chemical form (speciation) of metal ions in very dilute solutions (ng/ml). This method was tested on model systems including Pb, Cd, and As with C1/sup -/, CO/sub 3//sup 2 -/ and glycine ligands. Finally, the speciation of lead in a geothermal water was examined and the PbC1/sup +/ complex was observed and quantified.

FLAME: A finite element computer code for contaminant transport n variably-saturated media

International Nuclear Information System (INIS)

Baca, R.G.; Magnuson, S.O.

1992-06-01

A numerical model was developed for use in performance assessment studies at the INEL. The numerical model referred to as the FLAME computer code, is designed to simulate subsurface contaminant transport in a variably-saturated media. The code can be applied to model two-dimensional contaminant transport in an and site vadose zone or in an unconfined aquifer. In addition, the code has the capability to describe transport processes in a porous media with discrete fractures. This report presents the following: description of the conceptual framework and mathematical theory, derivations of the finite element techniques and algorithms, computational examples that illustrate the capability of the code, and input instructions for the general use of the code. The development of the FLAME computer code is aimed at providing environmental scientists at the INEL with a predictive tool for the subsurface water pathway. This numerical model is expected to be widely used in performance assessments for: (1) the Remedial Investigation/Feasibility Study process and (2) compliance studies required by the US Department of energy Order 5820.2A

Groundwater flow code verification ''benchmarking'' activity (COVE-2A): Analysis of participants' work

International Nuclear Information System (INIS)

Dykhuizen, R.C.; Barnard, R.W.

1992-02-01

The Nuclear Waste Repository Technology Department at Sandia National Laboratories (SNL) is investigating the suitability of Yucca Mountain as a potential site for underground burial of nuclear wastes. One element of the investigations is to assess the potential long-term effects of groundwater flow on the integrity of a potential repository. A number of computer codes are being used to model groundwater flow through geologic media in which the potential repository would be located. These codes compute numerical solutions for problems that are usually analytically intractable. Consequently, independent confirmation of the correctness of the solution is often not possible. Code verification is a process that permits the determination of the numerical accuracy of codes by comparing the results of several numerical solutions for the same problem. The international nuclear waste research community uses benchmarking for intercomparisons that partially satisfy the Nuclear Regulatory Commission (NRC) definition of code verification. This report presents the results from the COVE-2A (Code Verification) project, which is a subset of the COVE project

FLAME: A finite element computer code for contaminant transport n variably-saturated media

Energy Technology Data Exchange (ETDEWEB)

Baca, R.G.; Magnuson, S.O.

1992-06-01

A numerical model was developed for use in performance assessment studies at the INEL. The numerical model referred to as the FLAME computer code, is designed to simulate subsurface contaminant transport in a variably-saturated media. The code can be applied to model two-dimensional contaminant transport in an and site vadose zone or in an unconfined aquifer. In addition, the code has the capability to describe transport processes in a porous media with discrete fractures. This report presents the following: description of the conceptual framework and mathematical theory, derivations of the finite element techniques and algorithms, computational examples that illustrate the capability of the code, and input instructions for the general use of the code. The development of the FLAME computer code is aimed at providing environmental scientists at the INEL with a predictive tool for the subsurface water pathway. This numerical model is expected to be widely used in performance assessments for: (1) the Remedial Investigation/Feasibility Study process and (2) compliance studies required by the US Department of energy Order 5820.2A.

A description of the two-dimensional combustion code FLARE

International Nuclear Information System (INIS)

Martin, D.

1986-07-01

This report gives details of the computer code FLARE. The model used for the turbulent combustion of premixed gases is described. Details of the numerical scheme used to solve the resulting equations are discussed. The input and output for the code are also described. Details of the coding are given in the Appendices together with sample input and output. (author)

Testing the accuracy and stability of spectral methods in numerical relativity

International Nuclear Information System (INIS)

Boyle, Michael; Lindblom, Lee; Pfeiffer, Harald P.; Scheel, Mark A.; Kidder, Lawrence E.

2007-01-01

The accuracy and stability of the Caltech-Cornell pseudospectral code is evaluated using the Kidder, Scheel, and Teukolsky (KST) representation of the Einstein evolution equations. The basic 'Mexico City tests' widely adopted by the numerical relativity community are adapted here for codes based on spectral methods. Exponential convergence of the spectral code is established, apparently limited only by numerical roundoff error or by truncation error in the time integration. A general expression for the growth of errors due to finite machine precision is derived, and it is shown that this limit is achieved here for the linear plane-wave test

The numerical solution of ICRF fields in axisymmetric mirrors

International Nuclear Information System (INIS)

Phillips, M.W.; Todd, A.M.M.

1986-01-01

The numerics of a numerical code called GARFIELD (Grumman Aerospace RF fIELD code) designed to calculate the three-dimensional structure of ICRF fields in axisymmetric mirrors is presented. The code solves the electromagnetic wave equation for the electric field using a cold plasma dispersion relation with a small collision term to simulate absorption. The full wave solution including E.B is computed. The fields are Fourier analyzed in the poloidal direction and solved on a grid in the axial and radial directions. A two-dimensional equilibrium can be used as the source of equilibrium data. This allows us to extend previous studies of ICRF wave propagation and absorption in mirrors to include the effect of axial variation of the magnetic field and density. (orig.)

Noncoherent Spectral Optical CDMA System Using 1D Active Weight Two-Code Keying Codes

Directory of Open Access Journals (Sweden)

Bih-Chyun Yeh

2016-01-01

Full Text Available We propose a new family of one-dimensional (1D active weight two-code keying (TCK in spectral amplitude coding (SAC optical code division multiple access (OCDMA networks. We use encoding and decoding transfer functions to operate the 1D active weight TCK. The proposed structure includes an optical line terminal (OLT and optical network units (ONUs to produce the encoding and decoding codes of the proposed OLT and ONUs, respectively. The proposed ONU uses the modified cross-correlation to remove interferences from other simultaneous users, that is, the multiuser interference (MUI. When the phase-induced intensity noise (PIIN is the most important noise, the modified cross-correlation suppresses the PIIN. In the numerical results, we find that the bit error rate (BER for the proposed system using the 1D active weight TCK codes outperforms that for two other systems using the 1D M-Seq codes and 1D balanced incomplete block design (BIBD codes. The effective source power for the proposed system can achieve −10 dBm, which has less power than that for the other systems.

Utility of QR codes in biological collections.

Science.gov (United States)

Diazgranados, Mauricio; Funk, Vicki A

2013-01-01

The popularity of QR codes for encoding information such as URIs has increased exponentially in step with the technological advances and availability of smartphones, digital tablets, and other electronic devices. We propose using QR codes on specimens in biological collections to facilitate linking vouchers' electronic information with their associated collections. QR codes can efficiently provide such links for connecting collections, photographs, maps, ecosystem notes, citations, and even GenBank sequences. QR codes have numerous advantages over barcodes, including their small size, superior security mechanisms, increased complexity and quantity of information, and low implementation cost. The scope of this paper is to initiate an academic discussion about using QR codes on specimens in biological collections.

Utility of QR codes in biological collections

Directory of Open Access Journals (Sweden)

Mauricio Diazgranados

2013-07-01

Full Text Available The popularity of QR codes for encoding information such as URIs has increased exponentially in step with the technological advances and availability of smartphones, digital tablets, and other electronic devices. We propose using QR codes on specimens in biological collections to facilitate linking vouchers’ electronic information with their associated collections. QR codes can efficiently provide such links for connecting collections, photographs, maps, ecosystem notes, citations, and even GenBank sequences. QR codes have numerous advantages over barcodes, including their small size, superior security mechanisms, increased complexity and quantity of information, and low implementation cost. The scope of this paper is to initiate an academic discussion about using QR codes on specimens in biological collections.

COCOA code for creating mock observations of star cluster models

Science.gov (United States)

Askar, Abbas; Giersz, Mirek; Pych, Wojciech; Dalessandro, Emanuele

2018-04-01

We introduce and present results from the COCOA (Cluster simulatiOn Comparison with ObservAtions) code that has been developed to create idealized mock photometric observations using results from numerical simulations of star cluster evolution. COCOA is able to present the output of realistic numerical simulations of star clusters carried out using Monte Carlo or N-body codes in a way that is useful for direct comparison with photometric observations. In this paper, we describe the COCOA code and demonstrate its different applications by utilizing globular cluster (GC) models simulated with the MOCCA (MOnte Carlo Cluster simulAtor) code. COCOA is used to synthetically observe these different GC models with optical telescopes, perform point spread function photometry, and subsequently produce observed colour-magnitude diagrams. We also use COCOA to compare the results from synthetic observations of a cluster model that has the same age and metallicity as the Galactic GC NGC 2808 with observations of the same cluster carried out with a 2.2 m optical telescope. We find that COCOA can effectively simulate realistic observations and recover photometric data. COCOA has numerous scientific applications that maybe be helpful for both theoreticians and observers that work on star clusters. Plans for further improving and developing the code are also discussed in this paper.

saosakwe@yahoo.com Chemical Speciation and Mobility of Some

African Journals Online (AJOL)

Michael Horsfall

ABSTRACT: The mobility of some heavy metals (Fe, Co, Ni and Mn) in soils around ... Sampling and Analysis: Soil samples were collected ..... Speciation Studies of trace elements levels in .... Characterization of Radioactive Particles in the.

The influence of time units on the flexibility of the spatial numerical association of response codes effect.

Science.gov (United States)

Zhao, Tingting; He, Xianyou; Zhao, Xueru; Huang, Jianrui; Zhang, Wei; Wu, Shuang; Chen, Qi

2018-05-01

The Spatial Numerical/Temporal Association of Response Codes (SNARC/STEARC) effects are considered evidence of the association between number or time and space, respectively. As the SNARC effect was proposed by Dehaene, Bossini, and Giraux in 1993, several studies have suggested that different tasks and cultural factors can affect the flexibility of the SNARC effect. This study explored the influence of time units on the flexibility of the SNARC effect via materials with Arabic numbers, which were suffixed with time units and subjected to magnitude comparison tasks. Experiment 1 replicated the SNARC effect for numbers and the STEARC effect for time units. Experiment 2 explored the flexibility of the SNARC effect when numbers were attached to time units, which either conflicted with the numerical magnitude or in which the time units were the same or different. Experiment 3 explored whether the SNARC effect of numbers was stable when numbers were near the transition of two adjacent time units. The results indicate that the SNARC effect was flexible when the numbers were suffixed with time units: Time units influenced the direction of the SNARC effect in a way which could not be accounted for by the mathematical differences between the time units and numbers. This suggests that the SNARC effect is not obligatory and can be easily adapted or inhibited based on the current context. © 2017 The Authors. British Journal of Psychology published by John Wiley & Sons Ltd on behalf of British Psychological Society.

Numerical method for three dimensional steady-state two-phase flow calculations

International Nuclear Information System (INIS)

Raymond, P.; Toumi, I.

1992-01-01

This paper presents the numerical scheme which was developed for the FLICA-4 computer code to calculate three dimensional steady state two phase flows. This computer code is devoted to steady state and transient thermal hydraulics analysis of nuclear reactor cores 1,3 . The first section briefly describes the FLICA-4 flow modelling. Then in order to introduce the numerical method for steady state computations, some details are given about the implicit numerical scheme based upon an approximate Riemann solver which was developed for calculation of flow transients. The third section deals with the numerical method for steady state computations, which is derived from this previous general scheme and its optimization. We give some numerical results for steady state calculations and comparisons on required CPU time and memory for various meshing and linear system solvers

A numerical similarity approach for using retired Current Procedural Terminology (CPT) codes for electronic phenotyping in the Scalable Collaborative Infrastructure for a Learning Health System (SCILHS).

Science.gov (United States)

Klann, Jeffrey G; Phillips, Lori C; Turchin, Alexander; Weiler, Sarah; Mandl, Kenneth D; Murphy, Shawn N

2015-12-11

Interoperable phenotyping algorithms, needed to identify patient cohorts meeting eligibility criteria for observational studies or clinical trials, require medical data in a consistent structured, coded format. Data heterogeneity limits such algorithms' applicability. Existing approaches are often: not widely interoperable; or, have low sensitivity due to reliance on the lowest common denominator (ICD-9 diagnoses). In the Scalable Collaborative Infrastructure for a Learning Healthcare System (SCILHS) we endeavor to use the widely-available Current Procedural Terminology (CPT) procedure codes with ICD-9. Unfortunately, CPT changes drastically year-to-year - codes are retired/replaced. Longitudinal analysis requires grouping retired and current codes. BioPortal provides a navigable CPT hierarchy, which we imported into the Informatics for Integrating Biology and the Bedside (i2b2) data warehouse and analytics platform. However, this hierarchy does not include retired codes. We compared BioPortal's 2014AA CPT hierarchy with Partners Healthcare's SCILHS datamart, comprising three-million patients' data over 15 years. 573 CPT codes were not present in 2014AA (6.5 million occurrences). No existing terminology provided hierarchical linkages for these missing codes, so we developed a method that automatically places missing codes in the most specific "grouper" category, using the numerical similarity of CPT codes. Two informaticians reviewed the results. We incorporated the final table into our i2b2 SCILHS/PCORnet ontology, deployed it at seven sites, and performed a gap analysis and an evaluation against several phenotyping algorithms. The reviewers found the method placed the code correctly with 97 % precision when considering only miscategorizations ("correctness precision") and 52 % precision using a gold-standard of optimal placement ("optimality precision"). High correctness precision meant that codes were placed in a reasonable hierarchal position that a reviewer

COCOA Code for Creating Mock Observations of Star Cluster Models

OpenAIRE

Askar, Abbas; Giersz, Mirek; Pych, Wojciech; Dalessandro, Emanuele

2017-01-01

We introduce and present results from the COCOA (Cluster simulatiOn Comparison with ObservAtions) code that has been developed to create idealized mock photometric observations using results from numerical simulations of star cluster evolution. COCOA is able to present the output of realistic numerical simulations of star clusters carried out using Monte Carlo or \\textit{N}-body codes in a way that is useful for direct comparison with photometric observations. In this paper, we describe the C...

Opportunistic Adaptive Transmission for Network Coding Using Nonbinary LDPC Codes

Directory of Open Access Journals (Sweden)

Cocco Giuseppe

2010-01-01

Full Text Available Network coding allows to exploit spatial diversity naturally present in mobile wireless networks and can be seen as an example of cooperative communication at the link layer and above. Such promising technique needs to rely on a suitable physical layer in order to achieve its best performance. In this paper, we present an opportunistic packet scheduling method based on physical layer considerations. We extend channel adaptation proposed for the broadcast phase of asymmetric two-way bidirectional relaying to a generic number of sinks and apply it to a network context. The method consists of adapting the information rate for each receiving node according to its channel status and independently of the other nodes. In this way, a higher network throughput can be achieved at the expense of a slightly higher complexity at the transmitter. This configuration allows to perform rate adaptation while fully preserving the benefits of channel and network coding. We carry out an information theoretical analysis of such approach and of that typically used in network coding. Numerical results based on nonbinary LDPC codes confirm the effectiveness of our approach with respect to previously proposed opportunistic scheduling techniques.

Differential survival between visual environments supports a role of divergent sensory drive in cichlid fish speciation

NARCIS (Netherlands)

Maan, Martine E.; Seehausen, Ole; Groothuis, Ton G. G.

Identifying the selective forces that initiate ecological speciation is a major challenge in evolutionary biology. Sensory drive has been implicated in speciation in various taxa, largely based on phenotype-environment correlations and signatures of selection in sensory genes. Here, we present a

Fractionation, characterization and speciation of heavy metals in ...

African Journals Online (AJOL)

Speciation of heavy metals in soils determines the availability for metals for plant uptake and potential for contamination of groundwater following application of composts to agricultural lands. Methods used to characterize heavy metals in solid phase of composts and compost amended soils include physical fractionation ...

Speciation of Fe in Fe-modified zeolite catalysts

Czech Academy of Sciences Publication Activity Database

Smoláková, L.; Grygar, Tomáš; Čapek, L.; Schneeweiss, Oldřich; Zbořil, R.

2010-01-01

Roč. 647, č. 1 (2010), s. 8-19 ISSN 1572-6657 Institutional research plan: CEZ:AV0Z40320502; CEZ:AV0Z20410507 Keywords : solid state speciation * Fe2O3 * heterogeneous catalysts Subject RIV: CB - Analytical Chemistry, Separation Impact factor: 2.732, year: 2010

Speciation of Candida isolates obtained from diarrheal stool

Directory of Open Access Journals (Sweden)

Beena Uppal

2016-01-01

Conclusion Candida diarrhea was mostly seen in individuals younger than 12 years, most commonly caused by C. krusei. Resistance to fluconazole was high. A rising resistance to amphotericin B is alarming. Speciation of Candida is important to see the difference in antifungal susceptibility in different species.

Development of ADINA-J-integral code

International Nuclear Information System (INIS)

Kurihara, Ryoichi

1988-07-01

A general purpose finite element program ADINA (Automatic Dynamic Incremental Nonlinear Analysis), which was developed by Bathe et al., was revised to be able to calculate the J- and J-integral. This report introduced the numerical method to add this capability to the code, and the evaluation of the revised ADINA-J code by using a few of examples of the J estimation model, i.e. a compact tension specimen, a center cracked panel subjected to dynamic load, and a thick shell cylinder having inner axial crack subjected to thermal load. The evaluation testified the function of the revised code. (author)

Differential Survival between Visual Environments Supports a Role of Divergent Sensory Drive in Cichlid Fish Speciation.

Science.gov (United States)

Maan, Martine E; Seehausen, Ole; Groothuis, Ton G G

2017-01-01

Identifying the selective forces that initiate ecological speciation is a major challenge in evolutionary biology. Sensory drive has been implicated in speciation in various taxa, largely based on phenotype-environment correlations and signatures of selection in sensory genes. Here, we present a reciprocal transplant experiment revealing species differences in performance in alternative visual environments, consistent with speciation by divergent sensory drive. The closely related cichlids Pundamilia pundamilia and Pundamilia nyererei inhabit different visual environments in Lake Victoria and show associated differences in visual system properties. Mimicking the two light environments in the laboratory, we find a substantial reduction in survival of both species when reared in the other species' visual environment. This implies that the observed differences in Pundamilia color vision are indeed adaptive and substantiates the implicit assumption in sensory drive speciation models that divergent environmental selection is strong enough to drive divergence in sensory properties.

Syrthes thermal code and Estet or N3S fluid mechanics codes coupling; Couplage du code de thermique Syrthes et des codes de mecanique des fluides N3S et ou Estet

Energy Technology Data Exchange (ETDEWEB)

Peniguel, C [Electricite de France (EDF), 78 - Chatou (France). Direction des Etudes et Recherches; Rupp, I [SIMULOG, 78 - Guyancourt (France)

1997-06-01

EDF has developed numerical codes for modeling the conductive, radiative and convective thermal transfers and their couplings in complex industrial configurations: the convection in a fluid is solved by Estet in finite volumes or N3S in finite elements, the conduction is solved by Syrthes and the wall-to-wall thermal radiation is modelled by Syrthes with the help of a radiosity method. Syrthes controls the different heat exchanges which may occur between fluid and solid domains, using an explicit iterative method. An extension of Syrthes has been developed in order to allow the consideration of configurations where several fluid codes operate simultaneously, using ``message passing`` tools such as PVM (Parallel Virtual Machine) and the Calcium code coupler developed at EDF. Application examples are given

Ink-constrained halftoning with application to QR codes

Science.gov (United States)

Bayeh, Marzieh; Compaan, Erin; Lindsey, Theodore; Orlow, Nathan; Melczer, Stephen; Voller, Zachary

2014-01-01

This paper examines adding visually significant, human recognizable data into QR codes without affecting their machine readability by utilizing known methods in image processing. Each module of a given QR code is broken down into pixels, which are halftoned in such a way as to keep the QR code structure while revealing aspects of the secondary image to the human eye. The loss of information associated to this procedure is discussed, and entropy values are calculated for examples given in the paper. Numerous examples of QR codes with embedded images are included.

Light water reactor fuel analysis code FEMAXI-7; model and structure

International Nuclear Information System (INIS)

Suzuki, Motoe; Udagawa, Yutaka; Saitou, Hiroaki

2011-03-01

A light water reactor fuel analysis code FEMAXI-7 has been developed for the purpose of analyzing the fuel behavior in both normal conditions and anticipated transient conditions. This code is an advanced version which has been produced by incorporating the former version FEMAXI-6 with numerous functional improvements and extensions. In FEMAXI-7, many new models have been added and parameters have been clearly arranged. Also, to facilitate effective maintenance and accessibility of the code, modularization of subroutines and functions have been attained, and quality comment descriptions of variables or physical quantities have been incorporated in the source code. With these advancements, the FEMAXI-7 code has been upgraded to a versatile analytical tool for high burnup fuel behavior analyses. This report describes in detail the design, basic theory and structure, models and numerical method, and improvements and extensions. (author)

Laser-induced photoacoustic spectroscopy for the speciation of transuranic elements in natural aquatic systems

International Nuclear Information System (INIS)

Kim, J.I.; Stumpe, R.; Klenze, R.

1990-08-01

Laser-induced Photoacoustic Spectroscopy (LPAS) is a new elegant instrumentation for the chemical speciation of acoustic transuranium (TRU) ions in very dilute concentrations (> 10 -8 mol L -1 ). The paper describes the principle of LPAS and its application to the study of the chemical behaviour of TRU ions in natural aquatic systems, the knowledge of which has become increasingly in demand in connection with the safety analysis of nuclear waste disposal in the geosphere. The first part of the paper describes the principle, instrumentation and characteristics of LPAS in aqueous solution, taking particular examples from our own experience. The theoretical estimation of the speciation sensitivity is demonstrated and the result is compared with experiment. The second part deals with the spectral work in aqueous solution and then with the aplication of LPAS for the speciation of TRU ions in groundwater. Some examples demonstrated are hydrolysis reaction, complexation and colloid generation of the Am 3+ ion. Speciation sensitivities of U, Np, Pu and Am of different oxidation states in a variety of aqueous solutions are summarized. The application is of course open to a broad field of microchemistry in which the conventional spectrophotometric method has difficulty with sensitivity. (orig.)

Laser-induced photoacoustic spectroscopy for the speciation of transuranic elements in natural aquatic systems

International Nuclear Information System (INIS)

Kim, J.I.; Stumpe, R.; Klenze, R.

1991-01-01

Laser-induced photoacoustic spectroscopy (LPAS) is a new elegant instrumentation for the chemical speciation of aquatic transuranium (TRU) ions in very dilute concentrations (>10 -8 mol L -1 ). The paper describes the principle of LPAS and its application to the study of the chemical behaviour of TRU ions in natural aquatic systems, the knowledge of which has become increasingly in demand in connection with the safety analysis of nuclear waste disposal in the geosphere. The first part of the paper describes the principle, instrumentation and characteristics of LPAS in aqueous solution, taking particular examples from our own experience. The theoretical estimation of the speciation sensitivity is demonstrated and the result is compared with experiment. The second part deals with the spectral work in aqueous solution and then with the application of LPAS for the speciation of TRU ions in groundwater. Some examples demonstrated are hydrolysis reaction, complexation and colloid generation of the Am 3+ ion. Speciation sensitivities of U, Np, Pu and Am of different oxidation states in a variety of aqueous solutions are summarized. The application is of course open to a broad field of microchemistry in which the conventional spectrophotometric method has difficulty with sensitivity

XGC developments for a more efficient XGC-GENE code coupling

Science.gov (United States)

Dominski, Julien; Hager, Robert; Ku, Seung-Hoe; Chang, Cs

2017-10-01

In the Exascale Computing Program, the High-Fidelity Whole Device Modeling project initially aims at delivering a tightly-coupled simulation of plasma neoclassical and turbulence dynamics from the core to the edge of the tokamak. To permit such simulations, the gyrokinetic codes GENE and XGC will be coupled together. Numerical efforts are made to improve the numerical schemes agreement in the coupling region. One of the difficulties of coupling those codes together is the incompatibility of their grids. GENE is a continuum grid-based code and XGC is a Particle-In-Cell code using unstructured triangular mesh. A field-aligned filter is thus implemented in XGC. Even if XGC originally had an approximately field-following mesh, this field-aligned filter permits to have a perturbation discretization closer to the one solved in the field-aligned code GENE. Additionally, new XGC gyro-averaging matrices are implemented on a velocity grid adapted to the plasma properties, thus ensuring same accuracy from the core to the edge regions.

Numerical studies of impurities in fusion plasmas

International Nuclear Information System (INIS)

Hulse, R.A.

1982-09-01

The coupled partial differential equations used to describe the behavior of impurity ions in magnetically confined controlled fusion plasmas require numerical solution for cases of practical interest. Computer codes developed for impurity modeling at the Princeton Plasma Physics Laboratory are used as examples of the types of codes employed for this purpose. These codes solve for the impurity ionization state densities and associated radiation rates using atomic physics appropriate for these low-density, high-temperature plasmas. The simpler codes solve local equations in zero spatial dimensions while more complex cases require codes which explicitly include transport of the impurity ions simultaneously with the atomic processes of ionization and recombination. Typical applications are discussed and computational results are presented for selected cases of interest

Speciation on a local geographic scale: the evolution of a rare rock outcrop specialist in Mimulus.

Science.gov (United States)

Ferris, Kathleen G; Sexton, Jason P; Willis, John H

2014-08-05

Speciation can occur on both large and small geographical scales. In plants, local speciation, where small populations split off from a large-ranged progenitor species, is thought to be the dominant mode, yet there are still few examples to verify speciation has occurred in this manner. A recently described morphological species in the yellow monkey flowers, Mimulus filicifolius, is an excellent candidate for local speciation because of its highly restricted geographical range. Mimulus filicifolius was formerly identified as a population of M. laciniatus due to similar lobed leaf morphology and rocky outcrop habitat. To investigate whether M. filicifolius is genetically divergent and reproductively isolated from M. laciniatus, we examined patterns of genetic diversity in ten nuclear and eight microsatellite loci, and hybrid fertility in M. filicifolius and its purported close relatives: M. laciniatus, M. guttatus and M. nasutus. We found that M. filicifolius is genetically divergent from the other species and strongly reproductively isolated from M. laciniatus. We conclude that M. filicifolius is an independent rock outcrop specialist despite being morphologically and ecologically similar to M. laciniatus, and that its small geographical range nested within other wide-ranging members of the M. guttatus species complex is consistent with local speciation. © 2014 The Author(s) Published by the Royal Society. All rights reserved.

Data evaluation and code comparison activities

International Nuclear Information System (INIS)

Itikawa, Yukikazu; Takagi, Hidekazu; Nakamura, Yoshiharu; Imai, Makoto; Sasaki, Akira

2013-01-01

In atomic and molecular data base, intolerable numerical differences beyond error margin are found among some papers resulted from measurements or calculations even for the same collision processes. These differences spoil the reliability of the data base. This report describes the data evaluation for atomic and molecular data promoted by IAEA cooperated with other institutes, which Japanese researchers collaborate with. The reaction cross sections calculated numerically are evaluated for the collisions between electrons and molecular ions of H 2 + and HeH + . The application of an electron swarm parameter was shown for the evaluation and determination of the collision cross sections between electrons and molecules. In order to complete higher precision of atomic codes and a collisional-radiative model, IAEA held the workshop for the code comparison of the nonlocal thermodynamic equilibrium. (Y. Kazumata)

Numerical simulation for two-phase jet problem

International Nuclear Information System (INIS)

Lee, W.H.; Shah, V.L.

1981-01-01

A computer program TWOP was developed for obtaining the numerical solutions of three-dimensional, transient, two-phase flow system with nonequilibrium and nonhomogeneous conditions. TWOP employs two-fluid model and a set of the conservation equations formulated by Harlow and Amsden along with their Implicit Multi-Field (IMF) numerical technique that allows all degrees of couplings between the two fields. We have further extended the procedure of Harlow and Amsden by incorporating the implicit couplings of phase transition and interfacial heat transfer terms in the energy equations. Numerical results of two tested problems are presented to demonstrate the capabilities of the TWOP code. The first problem is the separation of vapor and liquid, showing that the code can handle the computational difficulties such as liquid packing and sharp interface phenomena. The second problem is the high pressure two-phase jet impinged on vertical plate, demonstrating the important role of the interfacial mass and momentum exchange

Contribution of analytical techniques coupled to the knowledge of the uranium speciation in natural conditions

International Nuclear Information System (INIS)

Petit, J.

2009-06-01

To understand the transport mechanisms and the radionuclides behaviour in the bio-geosphere is necessary to evaluate healthy and environmental risks of nuclear industry. These mechanisms are monitored by radioelements speciation, namely the distribution between their different physico-chemical forms in the environment. From this perspective, this PhD thesis deals with uranium speciation in a natural background. A detailed summary of uranium biogeochemistry has been written, which enables to restrict the PhD issue to uranium complexation with oxalic acid, a hydrophilic organic acid with good binding properties, ubiquitous in soil waters. Analytical conditions have been established by means of speciation diagrams. The speciation diagrams building by means of literature stability constants has allowed to define the analytical conditions of complex formation. The chosen analytical technique is the hyphenation of a separative technique (liquid chromatography LC or capillary electrophoresis CE) with mass spectrometry (ICPMS). The studied complexes presence in the synthetic samples has been confirmed with UV/visible spectrophotometry. LC-ICPMS analyses have proved the lability of the uranyl-organic acid complexes, namely their tendency to dissociate during analysis, which prevents from studying uranium speciation. CE-ICPMS study of labile complexes from a metal-ligand system has been made possible by employing affinity capillary electrophoresis, which enables to determine stability constants and electrophoretic mobilities. This PhD thesis has allowed to compare the different mathematical treatments of binding isotherm and to take into account ionic strength and real ligand concentration. Affinity CE has been applied successfully to lanthanum-oxalate (model system) and uranium-oxalate systems. The obtained results have been applied to a real system (situated in Le Bouchet). This shows the contribution of the developed method to the modelling of uranium speciation. (author)

Numerical analysis of non-stationary free surface flow in a Pelton bucket

Energy Technology Data Exchange (ETDEWEB)

Hana, Morten

1999-07-01

Computation and analysis of flow in Pelton buckets have been carried out. First a graphical method is investigated and partially improved. In order to decide whether to improve the method further or disregard it in favour of commercial computational fluid dynamics (CFD) codes, a study on numerical methods for free surface flow was carried out. This part of this work concentrates on the theoretical background for different numerical methods, and describes some practical considerations. Although small programs were created based on the literature survey, but only one reported herein, it was soon found that commonly available numerical codes were favourable in use. A code, RIPPLE, was acquired to study the Volume of Fluid (VOF) method in detail. The commercial codes used were Flow-3D and CFX-4. These programs were used in three different cases. First, a simplified 2-dimensional case was verified experimentally. Next, a 3-dimensional fixed jet calculation was carried out. Finally, numerical calculations with relative motion between the jet and buckets were carried out with CFX-4. The conclusion is that commercial CFD codes can replace the graphical method. But careful implementation is needed in order to resolve the special features of Pelton turbines, which are the free surface, the complex geometry and the relative motion between the jet and the bucket.

Speciation and bioavailability of copper in Lake Tjeukemeer

NARCIS (Netherlands)

Verweij, W.

1991-01-01

Chapter 1: introduction

In this thesis an account is given of a research project dealing with the chemical speciation and bioavailability of copper in Lake Tjeukemeer, a lake in the north of the Netherlands. The reason for the initiation of this project was a lack of

The intercomparison of aerosol codes

International Nuclear Information System (INIS)

Dunbar, I.H.; Fermandjian, J.; Gauvain, J.

1988-01-01

The behavior of aerosols in a reactor containment vessel following a severe accident could be an important determinant of the accident source term to the environment. Various processes result in the deposition of the aerosol onto surfaces within the containment, from where they are much less likely to be released. Some of these processes are very sensitive to particle size, so it is important to model the aerosol growth processes: agglomeration and condensation. A number of computer codes have been written to model growth and deposition processes. They have been tested against each other in a series of code comparison exercises. These exercises have investigated sensitivities to physical and numerical assumptions and have also proved a useful means of quality control for the codes. Various exercises in which code predictions are compared with experimental results are now under way

High accuracy mantle convection simulation through modern numerical methods

KAUST Repository

Kronbichler, Martin

2012-08-21

Numerical simulation of the processes in the Earth\\'s mantle is a key piece in understanding its dynamics, composition, history and interaction with the lithosphere and the Earth\\'s core. However, doing so presents many practical difficulties related to the numerical methods that can accurately represent these processes at relevant scales. This paper presents an overview of the state of the art in algorithms for high-Rayleigh number flows such as those in the Earth\\'s mantle, and discusses their implementation in the Open Source code Aspect (Advanced Solver for Problems in Earth\\'s ConvecTion). Specifically, we show how an interconnected set of methods for adaptive mesh refinement (AMR), higher order spatial and temporal discretizations, advection stabilization and efficient linear solvers can provide high accuracy at a numerical cost unachievable with traditional methods, and how these methods can be designed in a way so that they scale to large numbers of processors on compute clusters. Aspect relies on the numerical software packages deal.II and Trilinos, enabling us to focus on high level code and keeping our implementation compact. We present results from validation tests using widely used benchmarks for our code, as well as scaling results from parallel runs. © 2012 The Authors Geophysical Journal International © 2012 RAS.

RELAP5/MOD3 code manual: Code structure, system models, and solution methods. Volume 1

International Nuclear Information System (INIS)

1995-08-01

The RELAP5 code has been developed for best estimate transient simulation of light water reactor coolant systems during postulated accidents. The code models the coupled behavior of the reactor coolant system and the core for loss-of-coolant accidents, and operational transients, such as anticipated transient without scram, loss of offsite power, loss of feedwater, and loss of flow. A generic modeling, approach is used that permits simulating a variety of thermal hydraulic systems. Control system and secondary system components are included to permit modeling of plant controls, turbines, condensers, and secondary feedwater systems. RELAP5/MOD3 code documentation is divided into seven volumes: Volume I provides modeling theory and associated numerical schemes

Numerical model CCC

International Nuclear Information System (INIS)

Bodvarsson, G.S.; Lippmann, M.J.

1980-01-01

The computer program CCC (conduction-convection-consolidation), developed at Lawrence Berkeley Laboratory, solves numerically the heat and mass flow equations for a fully saturated medium, and computes one-dimensional consolidation of the simulated systems. The model employs the Integrated Finite Difference Method (IFDM) in discretizing the saturated medium and formulating the governing equations. The sets of equations are solved either by an iterative solution technique (old version) or an efficient sparse solver (new version). The deformation of the medium is calculated using the one-dimensional consolidation theory of Terzaghi. In this paper, the numerical code is described, validation examples given and areas of application discussed. Several example problems involving flow through fractured media are also presented

Survey Of Lossless Image Coding Techniques

Science.gov (United States)

Melnychuck, Paul W.; Rabbani, Majid

1989-04-01

Many image transmission/storage applications requiring some form of data compression additionally require that the decoded image be an exact replica of the original. Lossless image coding algorithms meet this requirement by generating a decoded image that is numerically identical to the original. Several lossless coding techniques are modifications of well-known lossy schemes, whereas others are new. Traditional Markov-based models and newer arithmetic coding techniques are applied to predictive coding, bit plane processing, and lossy plus residual coding. Generally speaking, the compression ratio offered by these techniques are in the area of 1.6:1 to 3:1 for 8-bit pictorial images. Compression ratios for 12-bit radiological images approach 3:1, as these images have less detailed structure, and hence, their higher pel correlation leads to a greater removal of image redundancy.

Experimental and numerical analysis for magnetically induced vibrations of conducting structure

International Nuclear Information System (INIS)

Nishio, Satoshi; Nakahira, Masataka; Miura, H.; Isono, A.

1993-01-01

The coupling effect between the electromagnetic field and mechanical response of a conducting structure is of importance in magnetic fusion devices as tokamak machine. The electromagnetically induced motion of the structure due to the Lorentz force induces additional eddy currents and further modifies the dynamic characteristics of the system. This paper is concerned with numerical modeling of the dynamic field-structure interaction and its verification by experimental tests. Here, a finite element numerical model for mechanical deformation and a wiregrid numerical model for eddy currents are employed for non-ferrous and elastic conductors. A computer code has been developed for 3-D thin shell structure. Experimental tests for the code verification were carried out by using a rectangular thin copper plate. Three kinds of the plate supporting systems, i.e., a cantilever system, a fixed both ends system and a simply supported ends system were investigated. A good agreement between the numerical and experimental results was obtained. Therefore, the computer code developed here is available for analyzing the electromagnetomechanical behavior of the plasma facing components of the tokamak device. (author)

Performance Evaluation of Spectral Amplitude Codes for OCDMA PON

DEFF Research Database (Denmark)

Binti Othman, Maisara; Jensen, Jesper Bevensee; Zhang, Xu

2011-01-01

the MAI effects in OCDMA. The performance has been characterized through received optical power (ROP) sensitivity and dispersion tolerance assessments. The numerical results show that the ZCC code has a slightly better performance compared to the other two codes for the ROP and similar behavior against...

RELAP-7 Numerical Stabilization: Entropy Viscosity Method

Energy Technology Data Exchange (ETDEWEB)

R. A. Berry; M. O. Delchini; J. Ragusa

2014-06-01

The RELAP-7 code is the next generation nuclear reactor system safety analysis code being developed at the Idaho National Laboratory (INL). The code is based on the INL's modern scientific software development framework, MOOSE (Multi-Physics Object Oriented Simulation Environment). The overall design goal of RELAP-7 is to take advantage of the previous thirty years of advancements in computer architecture, software design, numerical integration methods, and physical models. The end result will be a reactor systems analysis capability that retains and improves upon RELAP5's capability and extends the analysis capability for all reactor system simulation scenarios. RELAP-7 utilizes a single phase and a novel seven-equation two-phase flow models as described in the RELAP-7 Theory Manual (INL/EXT-14-31366). The basic equation systems are hyperbolic, which generally require some type of stabilization (or artificial viscosity) to capture nonlinear discontinuities and to suppress advection-caused oscillations. This report documents one of the available options for this stabilization in RELAP-7 -- a new and novel approach known as the entropy viscosity method. Because the code is an ongoing development effort in which the physical sub models, numerics, and coding are evolving, so too must the specific details of the entropy viscosity stabilization method. Here the fundamentals of the method in their current state are presented.

Comparative Studies of the Speciation Patterns of Nickel and ...

African Journals Online (AJOL)

Results of speciation stdies of nickel and chromium in wastewater, surface and groundwater systems using flame atomic absorption spectrometry (FAAS), graphite furnace atomic absorption spectrometry (GFAAS) and differential pulse adsorptive cathodic stripping voltammetry (DPAdCSV) are presented. Dimethylglyoxime ...

Biodegradation and speciation of residual SS-ethylenediaminedisuccinic acid (EDDS) in soil solution left after soil washing.

Science.gov (United States)

Tandy, Susan; Ammann, Adrian; Schulin, Rainer; Nowack, Bernd

2006-07-01

This paper aims to investigate the degradation and speciation of EDDS-complexes (SS-ethylenediaminedisuccinic acid) in soil following soil washing. The changes in soil solution metal and EDDS concentrations were investigated for three polluted soils. EDDS was degraded after a lag phase of 7-11 days with a half-life of 4.18-5.60 days. No influence of EDDS-speciation on the reaction was observed. The decrease in EDDS resulted in a corresponding decrease in solubilized metals. Changes in EDDS speciation can be related to (1) initial composition of the soil, (2) temporarily anoxic conditions in the soil slurry after soil washing, (3) exchange of EDDS complexes with Cu even in soils without elevated Cu and (4) formation of NiEDDS. Dissolved organic matter is important for metal speciation at low EDDS concentrations. Our results show that even in polluted soils EDDS is degraded from a level of several hundred micromoles to below 1 microM within 50 days.

Trace-element speciation and partitioning in environmental geochemistry and health

Energy Technology Data Exchange (ETDEWEB)

Farmer, J.G.; Gibson, M.J.; Lovell, M.A.

1983-09-01

Establishment of the chemical form and associations of trace elements is important in the scientifc and medical fields related to environmental geochemistry and health. Fundamental understanding of trace-element behavior, the realistic formulation of historical perspectives of trace-element contamination, an assessment of environmental transformation processes and a thorough appraisal of environment-related ill health and disease all depend on knowledge of the chemical speciation and partitioning of trace elements. These topics and the development of analytical speciation techniques and procedures are discussed with reference to trace-element studies in the Department of Forensic Medicine and Science, University of Glasgow, on lacustrine sediments and water, the atmosphere, soil and street dirt of an urban environment, and human biological fluids. 206 references, 4 figures.

Speciation of heavy metals Cu, Ni and Zn by modified BCR sequential extraction procedure in sediments from Banten Bay, Banten Province, Indonesia

Science.gov (United States)

Lestari; Budiyanto, F.; Hindarti, D.

2018-02-01

Banten Bay is categorized as a marine area that is busy with marine tourism activities, settlements and also industries. One potential impact of the condition is the occurrence of pollution from both industrial and domestic sources, erosion and sedimentation in the coastal environment. Samples were collected from 25 representative stations in April 2016. Chemical speciation of three heavy metals (Cu, Ni, and Zn) was studied using a modified sequential extraction procedure proposed by the European Standard, Measurements and Testing (SM&T) program, formerly the Community Bureau of Reference (BCR). The aims of this study are to determine geochemical speciation of 4 bounds of metal: acid-soluble, reducible, oxidizable and residual, and to assess their impacts in the sediments of Banten Bay, Indonesia. The result shows that the percentage of Copper (45.90-83.75%), Nickel (18.28-65.66%), and Zinc (30.45-79.51%) were mostly accumulated in residual fraction of the total concentrations. The Risk Assessment Code (RAC) reveals that about 0-7.07% of Copper and 1.11-24.35 % of Zinc at sites exist in exchangeable fraction and therefore, they are in low risk category. While 7.34-34.90 of Ni at sites exists in exchangeable fraction and therefore, it is in medium risk category to aquatic environment.

Perspectives on the development of next generation reactor systems safety analysis codes

International Nuclear Information System (INIS)

Zhang, H.

2015-01-01

'Full text:' Existing reactor system analysis codes, such as RELAP5-3D and TRAC, have gained worldwide success in supporting reactor safety analyses, as well as design and licensing of new reactors. These codes are important assets to the nuclear engineering research community, as well as to the nuclear industry. However, most of these codes were originally developed during the 1970s', and it becomes necessary to develop next-generation reactor system analysis codes for several reasons. Firstly, as new reactor designs emerge, there are new challenges emerging in numerical simulations of reactor systems such as long lasting transients and multi-physics phenomena. These new requirements are beyond the range of applicability of the existing system analysis codes. Advanced modeling and numerical methods must be taken into consideration to improve the existing capabilities. Secondly, by developing next-generation reactor system analysis codes, the knowledge (know how) in two phase flow modeling and the highly complex constitutive models will be transferred to the young generation of nuclear engineers. And thirdly, all computer codes have limited shelf life. It becomes less and less cost-effective to maintain a legacy code, due to the fast change of computer hardware and software environment. There are several critical perspectives in terms of developing next-generation reactor system analysis codes: 1) The success of the next-generation codes must be built upon the success of the existing codes. The knowledge of the existing codes, not just simply the manuals and codes, but knowing why and how, must be transferred to the next-generation codes. The next-generation codes should encompass the capability of the existing codes. The shortcomings of existing codes should be identified, understood, and properly categorized, for example into model deficiencies or numerical method deficiencies. 2) State-of-the-art models and numerical methods must be considered to

Perspectives on the development of next generation reactor systems safety analysis codes

Energy Technology Data Exchange (ETDEWEB)

Zhang, H., E-mail: Hongbin.Zhang@inl.gov [Idaho National Laboratory, Idaho Falls, ID (United States)

2015-07-01

'Full text:' Existing reactor system analysis codes, such as RELAP5-3D and TRAC, have gained worldwide success in supporting reactor safety analyses, as well as design and licensing of new reactors. These codes are important assets to the nuclear engineering research community, as well as to the nuclear industry. However, most of these codes were originally developed during the 1970s', and it becomes necessary to develop next-generation reactor system analysis codes for several reasons. Firstly, as new reactor designs emerge, there are new challenges emerging in numerical simulations of reactor systems such as long lasting transients and multi-physics phenomena. These new requirements are beyond the range of applicability of the existing system analysis codes. Advanced modeling and numerical methods must be taken into consideration to improve the existing capabilities. Secondly, by developing next-generation reactor system analysis codes, the knowledge (know how) in two phase flow modeling and the highly complex constitutive models will be transferred to the young generation of nuclear engineers. And thirdly, all computer codes have limited shelf life. It becomes less and less cost-effective to maintain a legacy code, due to the fast change of computer hardware and software environment. There are several critical perspectives in terms of developing next-generation reactor system analysis codes: 1) The success of the next-generation codes must be built upon the success of the existing codes. The knowledge of the existing codes, not just simply the manuals and codes, but knowing why and how, must be transferred to the next-generation codes. The next-generation codes should encompass the capability of the existing codes. The shortcomings of existing codes should be identified, understood, and properly categorized, for example into model deficiencies or numerical method deficiencies. 2) State-of-the-art models and numerical methods must be considered to

WEC-SIM Phase 1 Validation Testing -- Numerical Modeling of Experiments: Preprint

Energy Technology Data Exchange (ETDEWEB)

Ruehl, Kelley; Michelen, Carlos; Bosma, Bret; Yu, Yi-Hsiang

2016-08-01

The Wave Energy Converter Simulator (WEC-Sim) is an open-source code jointly developed by Sandia National Laboratories and the National Renewable Energy Laboratory. It is used to model wave energy converters subjected to operational and extreme waves. In order for the WEC-Sim code to be beneficial to the wave energy community, code verification and physical model validation is necessary. This paper describes numerical modeling of the wave tank testing for the 1:33-scale experimental testing of the floating oscillating surge wave energy converter. The comparison between WEC-Sim and the Phase 1 experimental data set serves as code validation. This paper is a follow-up to the WEC-Sim paper on experimental testing, and describes the WEC-Sim numerical simulations for the floating oscillating surge wave energy converter.

A Well-Posed Two Phase Flow Model and its Numerical Solutions for Reactor Thermal-Fluids Analysis

Energy Technology Data Exchange (ETDEWEB)

Kadioglu, Samet Y. [Idaho National Lab. (INL), Idaho Falls, ID (United States); Berry, Ray [Idaho National Lab. (INL), Idaho Falls, ID (United States); Martineau, Richard [Idaho National Lab. (INL), Idaho Falls, ID (United States)

2016-08-01

A 7-equation two-phase flow model and its numerical implementation is presented for reactor thermal-fluids applications. The equation system is well-posed and treats both phases as compressible flows. The numerical discretization of the equation system is based on the finite element formalism. The numerical algorithm is implemented in the next generation RELAP-7 code (Idaho National Laboratory (INL)’s thermal-fluids code) built on top of an other INL’s product, the massively parallel multi-implicit multi-physics object oriented code environment (MOOSE). Some preliminary thermal-fluids computations are presented.