Dual RNA Processing Roles of Pat1b via Cytoplasmic Lsm1-7 and Nuclear Lsm2-8 Complexes

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Caroline Vindry

2017-08-01

Full Text Available Pat1 RNA-binding proteins, enriched in processing bodies (P bodies, are key players in cytoplasmic 5′ to 3′ mRNA decay, activating decapping of mRNA in complex with the Lsm1-7 heptamer. Using co-immunoprecipitation and immunofluorescence approaches coupled with RNAi, we provide evidence for a nuclear complex of Pat1b with the Lsm2-8 heptamer, which binds to the spliceosomal U6 small nuclear RNA (snRNA. Furthermore, we establish the set of interactions connecting Pat1b/Lsm2-8/U6 snRNA/SART3 and additional U4/U6.U5 tri-small nuclear ribonucleoprotein particle (tri-snRNP components in Cajal bodies, the site of snRNP biogenesis. RNA sequencing following Pat1b depletion revealed the preferential upregulation of mRNAs normally found in P bodies and enriched in 3′ UTR AU-rich elements. Changes in >180 alternative splicing events were also observed, characterized by skipping of regulated exons with weak donor sites. Our data demonstrate the dual role of a decapping enhancer in pre-mRNA processing as well as in mRNA decay via distinct nuclear and cytoplasmic Lsm complexes.

Postage for the messenger: Designating routes for Nuclear mRNA Export

Science.gov (United States)

Natalizio, Barbara J.; Wente, Susan R.

2013-01-01

Transcription of messenger(m) RNA occurs in the nucleus, making the translocation of mRNA across the nuclear envelope (NE) boundary a critical determinant of proper gene expression and cell survival. A major mRNA export route occurs via the NXF1-dependent pathway through the nuclear pore complexes (NPCs) embedded in the NE. However, recent findings have discovered new evidence supporting the existence of multiple mechanisms for crossing the NE, including both NPC-mediated and NE budding-mediated pathways. An analysis of the trans-acting factors and cis components that define these pathways reveals shared elements as well as mechanistic differences. We review here the current understanding of the mechanisms that characterize each pathway and highlight the determinants that influence mRNA transport fate. PMID:23583578

Pre design processing of waste of ex-resin without materials matrix from nuclear power plant type PWR 1000 MW

International Nuclear Information System (INIS)

Cerdas Tarigan

2010-01-01

Have been done pre design processing of waste ex-resin without capacities matrix materials from nuclear power plant type PWR 1000 MW During the time radioactive waste of ex-resin processed to use process of immobilization use matrix materials like mixture cement and epoxy resin and then conditioning. This process is not effective and efficient because end result volume of end product bigger than volume early operation system and maintenance of its installation more difficult. To overcome this created a design of technology processing of waste of ex- resin without matrix materials through process of strainer, drying and conditioning represent technological innovation newly processing of radioactive waste of ex-resin. Besides this process more effective and efficient, volume of end product waste much more small from volume early and operation system and maintenance of its easier installation. Pre design is expected to be used as a basis to make conceptual of pre design installation of strainer, drying and conditioning for the processing of waste of ex-resin from nuclear power plant type PWR 1000 MW. (author)

Nuclear data for fusion: Validation of typical pre-processing methods for radiation transport calculations

International Nuclear Information System (INIS)

Hutton, T.; Sublet, J.C.; Morgan, L.; Leadbeater, T.W.

2015-01-01

Highlights: • We quantify the effect of processing nuclear data from ENDF to ACE format. • We consider the differences between fission and fusion angular distributions. • C-nat(n,el) at 2.0 MeV has a 0.6% deviation between original and processed data. • Fe-56(n,el) at 14.1 MeV has a 11.0% deviation between original and processed data. • Processed data do not accurately depict ENDF distributions for fusion energies. - Abstract: Nuclear data form the basis of the radiation transport codes used to design and simulate the behaviour of nuclear facilities, such as the ITER and DEMO fusion reactors. Typically these data and codes are biased towards fission and high-energy physics applications yet are still applied to fusion problems. With increasing interest in fusion applications, the lack of fusion specific codes and relevant data libraries is becoming increasingly apparent. Industry standard radiation transport codes require pre-processing of the evaluated data libraries prior to use in simulation. Historically these methods focus on speed of simulation at the cost of accurate data representation. For legacy applications this has not been a major concern, but current fusion needs differ significantly. Pre-processing reconstructs the differential and double differential interaction cross sections with a coarse binned structure, or more recently as a tabulated cumulative distribution function. This work looks at the validity of applying these processing methods to data used in fusion specific calculations in comparison to fission. The relative effects of applying this pre-processing mechanism, to both fission and fusion relevant reaction channels are demonstrated, and as such the poor representation of these distributions for the fusion energy regime. For the nat C(n,el) reaction at 2.0 MeV, the binned differential cross section deviates from the original data by 0.6% on average. For the 56 Fe(n,el) reaction at 14.1 MeV, the deviation increases to 11.0%. We

NVL2, a nucleolar AAA-ATPase, is associated with the nuclear exosome and is involved in pre-rRNA processing

Energy Technology Data Exchange (ETDEWEB)

Yoshikatsu, Yuki [Department of Life Systems, Institute of Technology and Science, The University of Tokushima Graduate School, Tokushima 770-8506 (Japan); Ishida, Yo-ichi; Sudo, Haruka [Department of Molecular and Cellular Biochemistry, Meiji Pharmaceutical University, Kiyose, Tokyo 204-8588 (Japan); Yuasa, Keizo; Tsuji, Akihiko [Department of Life Systems, Institute of Technology and Science, The University of Tokushima Graduate School, Tokushima 770-8506 (Japan); Nagahama, Masami, E-mail: nagahama@my-pharm.ac.jp [Department of Molecular and Cellular Biochemistry, Meiji Pharmaceutical University, Kiyose, Tokyo 204-8588 (Japan)

2015-08-28

Nuclear VCP-like 2 (NVL2) is a member of the chaperone-like AAA-ATPase family and is involved in the biosynthesis of 60S ribosomal subunits in mammalian cells. We previously showed the interaction of NVL2 with a DExD/H-box RNA helicase MTR4/DOB1, which is a known cofactor for an exoribonuclease complex, the exosome. This finding implicated NVL2 in RNA metabolic processes during ribosome biogenesis. In the present study, we found that a series of mutations within the ATPase domain of NVL2 causes a defect in pre-rRNA processing into mature 28S and 5.8S rRNAs. Co-immunoprecipitation analysis showed that NVL2 was associated with the nuclear exosome complex, which includes RRP6 as a nucleus-specific catalytic subunit. This interaction was prevented by depleting either MTR4 or RRP6, indicating their essential role in mediating this interaction with NVL2. Additionally, knockdown of MPP6, another cofactor for the nuclear exosome, also prevented the interaction by causing MTR4 to dissociate from the nuclear exosome. These results suggest that NVL2 is involved in pre-rRNA processing by associating with the nuclear exosome complex and that MPP6 is required for maintaining the integrity of this rRNA processing complex. - Highlights: • ATPase-deficient mutants of NVL2 have decreased pre-rRNA processing. • NVL2 associates with the nuclear exosome through interactions with MTR4 and RRP6. • MPP6 stabilizes MTR4-RRP6 interaction and allows NVL2 to interact with the complex.

Role of a redox-based methylation switch in mRNA life cycle ( pre- & post- transcriptional maturation and protein turnover : Implications in neurological disorders

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MALAV SUCHIN TRIVEDI

2012-06-01

Full Text Available Homeostatic synaptic scaling in response to neuronal stimulus or activation, as well as due to changes in cellular niche, is an important phenomenon for memory consolidation, retrieval, and other similar cognitive functions. Neurological disorders and cognitive disabilities in autism, Rett syndrome, schizophrenia, dementia etc., are strongly correlated to alterations in protein expression (both synaptic and cytoplasmic. This correlation suggests that efficient temporal regulation of synaptic protein expression is important for synaptic plasticity. In addition, equilibrium between mRNA processing, protein translation and protein turnover is a critical sensor/trigger for recording synaptic information, normal cognition and behavior. Thus a regulatory switch, controlling the lifespan, maturation and processing of mRNA, might influence cognition and adaptive behavior. Here, we propose a two part novel hypothesis that methylation might act as this suggested coordinating switch to critically regulate mRNA maturation at 1.The pre-transcription level, by regulating precursor-RNA (pre-RNA processing into mRNA, via other non-coding RNAs and their influence on splicing phenomenon, and 2. the post-transcription level by modulating the regulatory functions of ribonucleoproteins (RNP and RNA binding proteins (RNABP in mRNA translation, dendritic translocation as well as protein synthesis and synaptic turnover. DNA methylation changes are well recognized and highly correlated to gene expression levels as well as, learning and memory; however, RNA methylation changes are recently characterized and yet their functional implications are not established. This review article provides some insight on the intriguing consequences of changes in methylation levels on mRNA life-cycle. We also suggest that, since methylation is under the control of glutathione antioxidant levels, the redox status of neurons might be the central regulatory switch for methylation

The actin binding cytoskeletal protein Moesin is involved in nuclear mRNA export.

Science.gov (United States)

Kristó, Ildikó; Bajusz, Csaba; Borsos, Barbara N; Pankotai, Tibor; Dopie, Joseph; Jankovics, Ferenc; Vartiainen, Maria K; Erdélyi, Miklós; Vilmos, Péter

2017-10-01

Current models imply that the evolutionarily conserved, actin-binding Ezrin-Radixin-Moesin (ERM) proteins perform their activities at the plasma membrane by anchoring membrane proteins to the cortical actin network. Here we show that beside its cytoplasmic functions, the single ERM protein of Drosophila, Moesin, has a novel role in the nucleus. The activation of transcription by heat shock or hormonal treatment increases the amount of nuclear Moesin, indicating biological function for the protein in the nucleus. The distribution of Moesin in the nucleus suggests a function in transcription and the depletion of mRNA export factors Nup98 or its interacting partner, Rae1, leads to the nuclear accumulation of Moesin, suggesting that the nuclear function of the protein is linked to mRNA export. Moesin localizes to mRNP particles through the interaction with the mRNA export factor PCID2 and knock down of Moesin leads to the accumulation of mRNA in the nucleus. Based on our results we propose that, beyond its well-known, manifold functions in the cytoplasm, the ERM protein of Drosophila is a new, functional component of the nucleus where it participates in mRNA export. Copyright © 2017 Elsevier B.V. All rights reserved.

Rift Valley fever virus NSS gene expression correlates with a defect in nuclear mRNA export.

Science.gov (United States)

Copeland, Anna Maria; Van Deusen, Nicole M; Schmaljohn, Connie S

2015-12-01

We investigated the localization of host mRNA during Rift Valley fever virus (RVFV) infection. Fluorescence in situ hybridization revealed that infection with RVFV altered the localization of host mRNA. mRNA accumulated in the nuclei of RVFV-infected but not mock-infected cells. Further, overexpression of the NSS gene, but not the N, GN or NSM genes correlated with mRNA nuclear accumulation. Nuclear accumulation of host mRNA was not observed in cells infected with a strain of RVFV lacking the gene encoding NSS, confirming that expression of NSS is likely responsible for this phenomenon. Published by Elsevier Inc.

The function of the inner nuclear envelope protein SUN1 in mRNA export is regulated by phosphorylation.

Science.gov (United States)

Li, Ping; Stumpf, Maria; Müller, Rolf; Eichinger, Ludwig; Glöckner, Gernot; Noegel, Angelika A

2017-08-22

SUN1, a component of the LINC (Linker of Nucleoskeleton and Cytoskeleton) complex, functions in mammalian mRNA export through the NXF1-dependent pathway. It associates with mRNP complexes by direct interaction with NXF1. It also binds to the NPC through association with the nuclear pore component Nup153, which is involved in mRNA export. The SUN1-NXF1 association is at least partly regulated by a protein kinase C (PKC) which phosphorylates serine 113 (S113) in the N-terminal domain leading to reduced interaction. The phosphorylation appears to be important for the SUN1 function in nuclear mRNA export since GFP-SUN1 carrying a S113A mutation was less efficient in restoring mRNA export after SUN1 knockdown as compared to the wild type protein. By contrast, GFP-SUN1-S113D resembling the phosphorylated state allowed very efficient export of poly(A)+RNA. Furthermore, probing a possible role of the LINC complex component Nesprin-2 in this process we observed impaired mRNA export in Nesprin-2 knockdown cells. This effect might be independent of SUN1 as expression of a GFP tagged SUN-domain deficient SUN1, which no longer can interact with Nesprin-2, did not affect mRNA export.

Dissecting mechanisms of nuclear mRNA surveillance in THO/sub2 complex mutants

DEFF Research Database (Denmark)

Rougemaille, Mathieu; Gudipati, Rajani K; Olesen, Jens Raabjerg

2007-01-01

The nuclear exosome is involved in numerous RNA metabolic processes. Exosome degradation of rRNA, snoRNA, snRNA and tRNA in Saccharomyces cerevisiae is activated by TRAMP complexes, containing either the Trf4p or Trf5p poly(A) polymerase. These enzymes are presumed to facilitate exosome access...... is required for both retention and degradation of nuclear restricted mRNAs. We show here that Trf4p, in the context of TRAMP, is an mRNA surveillance factor. However, unlike Rrp6p, Trf4p only partakes in RNA degradation and not in transcript retention. Surprisingly, a polyadenylation-defective Trf4p protein...

Nuclear imprisonment of host cellular mRNA by nsp1β protein of porcine reproductive and respiratory syndrome virus

International Nuclear Information System (INIS)

Han, Mingyuan; Ke, Hanzhong; Zhang, Qingzhan; Yoo, Dongwan

2017-01-01

Positive-strand RNA genomes function as mRNA for viral protein synthesis which is fully reliant on host cell translation machinery. Competing with cellular protein translation apparatus needs to ensure the production of viral proteins, but this also stifles host innate defense. In the present study, we showed that porcine reproductive and respiratory syndrome virus (PRRSV), whose replication takes place in the cytoplasm, imprisoned host cell mRNA in the nucleus, which suggests a novel mechanism to enhance translation of PRRSV genome. PRRSV nonstructural protein (nsp) 1β was identified as the nuclear protein playing the role for host mRNA nuclear retention and subversion of host protein synthesis. A SAP (SAF-A/B, Acinus, and PIAS) motif was identified in nsp1β with the consensus sequence of 126 -LQxxLxxxGL- 135 . In situ hybridization unveiled that SAP mutants were unable to cause nuclear retention of host cell mRNAs and did not suppress host protein synthesis. In addition, these SAP mutants reverted PRRSV-nsp1β-mediated suppression of interferon (IFN) production, IFN signaling, and TNF-α production pathway. Using reverse genetics, a series of SAP mutant PRRS viruses, vK124A, vL126A, vG134A, and vL135A were generated. No mRNA nuclear retention was observed during vL126A and vL135A infections. Importantly, vL126A and vL135A did not suppress IFN production. For other arteriviruses, mRNA nuclear accumulation was also observed for LDV-nsp1β and SHFV-nsp1β. EAV-nsp1 was exceptional and did not block the host mRNA nuclear export. - Highlights: •PRRS virus blocks host mRNA nuclear export to the cytoplasm. •PRRSV nsp1β is the viral protein responsible for host mRNA nuclear retention. •SAP domain in nsp1β is essential for host mRNA nuclear retention and type I interferon suppression. •Mutation in the SAP domain of nsp1β causes the loss of function. •Host mRNA nuclear retention by nsp1β is common in the family Arteriviridae, except equine arteritis virus.

Nuclear imprisonment of host cellular mRNA by nsp1β protein of porcine reproductive and respiratory syndrome virus

Energy Technology Data Exchange (ETDEWEB)

Han, Mingyuan, E-mail: hanming@umich.edu; Ke, Hanzhong; Zhang, Qingzhan; Yoo, Dongwan, E-mail: dyoo@illinois.edu

2017-05-15

Positive-strand RNA genomes function as mRNA for viral protein synthesis which is fully reliant on host cell translation machinery. Competing with cellular protein translation apparatus needs to ensure the production of viral proteins, but this also stifles host innate defense. In the present study, we showed that porcine reproductive and respiratory syndrome virus (PRRSV), whose replication takes place in the cytoplasm, imprisoned host cell mRNA in the nucleus, which suggests a novel mechanism to enhance translation of PRRSV genome. PRRSV nonstructural protein (nsp) 1β was identified as the nuclear protein playing the role for host mRNA nuclear retention and subversion of host protein synthesis. A SAP (SAF-A/B, Acinus, and PIAS) motif was identified in nsp1β with the consensus sequence of {sub 126}-LQxxLxxxGL-{sub 135}. In situ hybridization unveiled that SAP mutants were unable to cause nuclear retention of host cell mRNAs and did not suppress host protein synthesis. In addition, these SAP mutants reverted PRRSV-nsp1β-mediated suppression of interferon (IFN) production, IFN signaling, and TNF-α production pathway. Using reverse genetics, a series of SAP mutant PRRS viruses, vK124A, vL126A, vG134A, and vL135A were generated. No mRNA nuclear retention was observed during vL126A and vL135A infections. Importantly, vL126A and vL135A did not suppress IFN production. For other arteriviruses, mRNA nuclear accumulation was also observed for LDV-nsp1β and SHFV-nsp1β. EAV-nsp1 was exceptional and did not block the host mRNA nuclear export. - Highlights: •PRRS virus blocks host mRNA nuclear export to the cytoplasm. •PRRSV nsp1β is the viral protein responsible for host mRNA nuclear retention. •SAP domain in nsp1β is essential for host mRNA nuclear retention and type I interferon suppression. •Mutation in the SAP domain of nsp1β causes the loss of function. •Host mRNA nuclear retention by nsp1β is common in the family Arteriviridae, except equine

Inner nuclear envelope protein SUN1 plays a prominent role in mammalian mRNA export.

Science.gov (United States)

Li, Ping; Noegel, Angelika A

2015-11-16

Nuclear export of messenger ribonucleoproteins (mRNPs) through the nuclear pore complex (NPC) can be roughly classified into two forms: bulk and specific export, involving an nuclear RNA export factor 1 (NXF1)-dependent pathway and chromosome region maintenance 1 (CRM1)-dependent pathway, respectively. SUN proteins constitute the inner nuclear envelope component of the l I: nker of N: ucleoskeleton and C: ytoskeleton (LINC) complex. Here, we show that mammalian cells require SUN1 for efficient nuclear mRNP export. The results indicate that both SUN1 and SUN2 interact with heterogeneous nuclear ribonucleoprotein (hnRNP) F/H and hnRNP K/J. SUN1 depletion inhibits the mRNP export, with accumulations of both hnRNPs and poly(A)+RNA in the nucleus. Leptomycin B treatment indicates that SUN1 functions in mammalian mRNA export involving the NXF1-dependent pathway. SUN1 mediates mRNA export through its association with mRNP complexes via a direct interaction with NXF1. Additionally, SUN1 associates with the NPC through a direct interaction with Nup153, a nuclear pore component involved in mRNA export. Taken together, our results reveal that the inner nuclear envelope protein SUN1 has additional functions aside from being a central component of the LINC complex and that it is an integral component of the mammalian mRNA export pathway suggesting a model whereby SUN1 recruits NXF1-containing mRNP onto the nuclear envelope and hands it over to Nup153. © The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research.

NVL2, a nucleolar AAA-ATPase, is associated with the nuclear exosome and is involved in pre-rRNA processing.

Science.gov (United States)

Yoshikatsu, Yuki; Ishida, Yo-ichi; Sudo, Haruka; Yuasa, Keizo; Tsuji, Akihiko; Nagahama, Masami

2015-08-28

Nuclear VCP-like 2 (NVL2) is a member of the chaperone-like AAA-ATPase family and is involved in the biosynthesis of 60S ribosomal subunits in mammalian cells. We previously showed the interaction of NVL2 with a DExD/H-box RNA helicase MTR4/DOB1, which is a known cofactor for an exoribonuclease complex, the exosome. This finding implicated NVL2 in RNA metabolic processes during ribosome biogenesis. In the present study, we found that a series of mutations within the ATPase domain of NVL2 causes a defect in pre-rRNA processing into mature 28S and 5.8S rRNAs. Co-immunoprecipitation analysis showed that NVL2 was associated with the nuclear exosome complex, which includes RRP6 as a nucleus-specific catalytic subunit. This interaction was prevented by depleting either MTR4 or RRP6, indicating their essential role in mediating this interaction with NVL2. Additionally, knockdown of MPP6, another cofactor for the nuclear exosome, also prevented the interaction by causing MTR4 to dissociate from the nuclear exosome. These results suggest that NVL2 is involved in pre-rRNA processing by associating with the nuclear exosome complex and that MPP6 is required for maintaining the integrity of this rRNA processing complex. Copyright © 2015 Elsevier Inc. All rights reserved.

Full-length mRNA sequencing uncovers a widespread coupling between transcription initiation and mRNA processing.

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Anvar, Seyed Yahya; Allard, Guy; Tseng, Elizabeth; Sheynkman, Gloria M; de Klerk, Eleonora; Vermaat, Martijn; Yin, Raymund H; Johansson, Hans E; Ariyurek, Yavuz; den Dunnen, Johan T; Turner, Stephen W; 't Hoen, Peter A C

2018-03-29

The multifaceted control of gene expression requires tight coordination of regulatory mechanisms at transcriptional and post-transcriptional level. Here, we studied the interdependence of transcription initiation, splicing and polyadenylation events on single mRNA molecules by full-length mRNA sequencing. In MCF-7 breast cancer cells, we find 2700 genes with interdependent alternative transcription initiation, splicing and polyadenylation events, both in proximal and distant parts of mRNA molecules, including examples of coupling between transcription start sites and polyadenylation sites. The analysis of three human primary tissues (brain, heart and liver) reveals similar patterns of interdependency between transcription initiation and mRNA processing events. We predict thousands of novel open reading frames from full-length mRNA sequences and obtained evidence for their translation by shotgun proteomics. The mapping database rescues 358 previously unassigned peptides and improves the assignment of others. By recognizing sample-specific amino-acid changes and novel splicing patterns, full-length mRNA sequencing improves proteogenomics analysis of MCF-7 cells. Our findings demonstrate that our understanding of transcriptome complexity is far from complete and provides a basis to reveal largely unresolved mechanisms that coordinate transcription initiation and mRNA processing.

Human intronless genes: Functional groups, associated diseases, evolution, and mRNA processing in absence of splicing

International Nuclear Information System (INIS)

Grzybowska, Ewa A.

2012-01-01

Highlights: ► Functional characteristics of intronless genes (IGs). ► Diseases associated with IGs. ► Origin and evolution of IGs. ► mRNA processing without splicing. -- Abstract: Intronless genes (IGs) constitute approximately 3% of the human genome. Human IGs are essentially different in evolution and functionality from the IGs of unicellular eukaryotes, which represent the majority in their genomes. Functional analysis of IGs has revealed a massive over-representation of signal transduction genes and genes encoding regulatory proteins important for growth, proliferation, and development. IGs also often display tissue-specific expression, usually in the nervous system and testis. These characteristics translate into IG-associated diseases, mainly neuropathies, developmental disorders, and cancer. IGs represent recent additions to the genome, created mostly by retroposition of processed mRNAs with retained functionality. Processing, nuclear export, and translation of these mRNAs should be hampered dramatically by the lack of splice factors, which normally tightly cover mature transcripts and govern their fate. However, natural IGs manage to maintain satisfactory expression levels. Different mechanisms by which IGs solve the problem of mRNA processing and nuclear export are discussed here, along with their possible impact on reporter studies.

Rift Valley fever virus NS{sub S} gene expression correlates with a defect in nuclear mRNA export

Energy Technology Data Exchange (ETDEWEB)

Copeland, Anna Maria; Van Deusen, Nicole M.; Schmaljohn, Connie S., E-mail: Connie.s.schmaljohn.civ@mail.mil

2015-12-15

We investigated the localization of host mRNA during Rift Valley fever virus (RVFV) infection. Fluorescence in situ hybridization revealed that infection with RVFV altered the localization of host mRNA. mRNA accumulated in the nuclei of RVFV-infected but not mock-infected cells. Further, overexpression of the NS{sub S} gene, but not the N, G{sub N} or NS{sub M} genes correlated with mRNA nuclear accumulation. Nuclear accumulation of host mRNA was not observed in cells infected with a strain of RVFV lacking the gene encoding NS{sub S}, confirming that expression of NS{sub S} is likely responsible for this phenomenon. - Highlights: • Rift Valley fever virus (RVFV) infection alters the localization of host mRNA. • mRNA accumulates in the nuclei of RVFV-infected but not mock-infected cells. • NS{sub S} is likely responsible for mRNA relocalization to the nucleus.

Dissecting mechanisms of nuclear mRNA surveillance in THO/sub2 complex mutants

DEFF Research Database (Denmark)

Rougemaille, Mathieu; Gudipati, Rajani Kanth; Olesen, Jens Raabjerg

2007-01-01

by appending oligo(A)-tails onto structured substrates. Another role of the nuclear exosome is that of mRNA surveillance. In strains harboring a mutated THO/Sub2p system, involved in messenger ribonucleoprotein particle biogenesis and nuclear export, the exosome-associated 3' 5' exonuclease Rrp6p is required...

ALS Associated Mutations in Matrin 3 Alter Protein-Protein Interactions and Impede mRNA Nuclear Export.

Science.gov (United States)

Boehringer, Ashley; Garcia-Mansfield, Krystine; Singh, Gurkaran; Bakkar, Nadine; Pirrotte, Patrick; Bowser, Robert

2017-11-06

Mutations in Matrin 3 have recently been linked to ALS, though the mechanism that induces disease in these patients is unknown. To define the protein interactome of wild-type and ALS-linked MATR3 mutations, we performed immunoprecipitation followed by mass spectrometry using NSC-34 cells expressing human wild-type or mutant Matrin 3. Gene ontology analysis identified a novel role for Matrin 3 in mRNA transport centered on proteins in the TRanscription and EXport (TREX) complex, known to function in mRNA biogenesis and nuclear export. ALS-linked mutations in Matrin 3 led to its re-distribution within the nucleus, decreased co-localization with endogenous Matrin 3 and increased co-localization with specific TREX components. Expression of disease-causing Matrin 3 mutations led to nuclear mRNA export defects of both global mRNA and more specifically the mRNA of TDP-43 and FUS. Our findings identify a potential pathogenic mechanism attributable to MATR3 mutations and further link cellular transport defects to ALS.

Supraspliceosomes at Defined Functional States Portray the Pre-Assembled Nature of the Pre-mRNA Processing Machine in the Cell Nucleus

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Hani Kotzer-Nevo

2014-06-01

Full Text Available When isolated from mammalian cell nuclei, all nuclear pre-mRNAs are packaged in multi-subunit large ribonucleoprotein complexes—supraspliceosomes—composed of four native spliceosomes interconnected by the pre-mRNA. Supraspliceosomes contain all five spliceosomal U snRNPs, together with other splicing factors, and are functional in splicing. Supraspliceosomes studied thus far represent the steady-state population of nuclear pre-mRNAs that were isolated at different stages of the splicing reaction. To analyze specific splicing complexes, here, we affinity purified Pseudomonas aeruginosa phage 7 (PP7-tagged splicing complexes assembled in vivo on Adenovirus Major Late (AdML transcripts at specific functional stages, and characterized them using molecular techniques including mass spectrometry. First, we show that these affinity purified splicing complexes assembled on PP7-tagged AdML mRNA or on PP7-tagged AdML pre-mRNA are assembled in supraspliceosomes. Second, similar to the general population of supraspliceosomes, these defined supraspliceosomes populations are assembled with all five U snRNPs at all splicing stages. This study shows that dynamic changes in base-pairing interactions of U snRNA:U snRNA and U snRNA:pre-mRNA that occur in vivo during the splicing reaction do not require changes in U snRNP composition of the supraspliceosome. Furthermore, there is no need to reassemble a native spliceosome for the splicing of each intron, and rearrangements of the interactions will suffice.

Influenza A Virus NS1 Protein Promotes Efficient Nuclear Export of Unspliced Viral M1 mRNA.

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Pereira, Carina F; Read, Eliot K C; Wise, Helen M; Amorim, Maria J; Digard, Paul

2017-08-01

Influenza A virus mRNAs are transcribed by the viral RNA-dependent RNA polymerase in the cell nucleus before being exported to the cytoplasm for translation. Segment 7 produces two major transcripts: an unspliced mRNA that encodes the M1 matrix protein and a spliced transcript that encodes the M2 ion channel. Export of both mRNAs is dependent on the cellular NXF1/TAP pathway, but it is unclear how they are recruited to the export machinery or how the intron-containing but unspliced M1 mRNA bypasses the normal quality-control checkpoints. Using fluorescent in situ hybridization to monitor segment 7 mRNA localization, we found that cytoplasmic accumulation of unspliced M1 mRNA was inefficient in the absence of NS1, both in the context of segment 7 RNPs reconstituted by plasmid transfection and in mutant virus-infected cells. This effect was independent of any major effect on steady-state levels of segment 7 mRNA or splicing but corresponded to a ∼5-fold reduction in the accumulation of M1. A similar defect in intronless hemagglutinin (HA) mRNA nuclear export was seen with an NS1 mutant virus. Efficient export of M1 mRNA required both an intact NS1 RNA-binding domain and effector domain. Furthermore, while wild-type NS1 interacted with cellular NXF1 and also increased the interaction of segment 7 mRNA with NXF1, mutant NS1 polypeptides unable to promote mRNA export did neither. Thus, we propose that NS1 facilitates late viral gene expression by acting as an adaptor between viral mRNAs and the cellular nuclear export machinery to promote their nuclear export. IMPORTANCE Influenza A virus is a major pathogen of a wide variety of mammalian and avian species that threatens public health and food security. A fuller understanding of the virus life cycle is important to aid control strategies. The virus has a small genome that encodes relatively few proteins that are often multifunctional. Here, we characterize a new function for the NS1 protein, showing that, as well as

Pre-equilibrium nuclear reactions: An introduction to classical and quantum-mechanical models

International Nuclear Information System (INIS)

Koning, A.J.; Akkermans, J.M.

1999-01-01

In studies of light-ion induced nuclear reactions one distinguishes three different mechanisms: direct, compound and pre-equilibrium nuclear reactions. These reaction processes can be subdivided according to time scales or, equivalently, the number of intranuclear collisions taking place before emission. Furthermore, each mechanism preferably excites certain parts of the nuclear level spectrum and is characterized by different types of angular distributions. This presentation includes description of the classical, exciton model, semi-classical models, with some selected results, and quantum mechanical models. A survey of classical versus quantum-mechanical pre-equilibrium reaction theory is presented including practical applications

The 1992 ENDF Pre-processing codes

International Nuclear Information System (INIS)

Cullen, D.E.

1992-01-01

This document summarizes the 1992 version of the ENDF pre-processing codes which are required for processing evaluated nuclear data coded in the format ENDF-4, ENDF-5, or ENDF-6. Included are the codes CONVERT, MERGER, LINEAR, RECENT, SIGMA1, LEGEND, FIXUP, GROUPIE, DICTION, MIXER, VIRGIN, COMPLOT, EVALPLOT, RELABEL. Some of the functions of these codes are: to calculate cross-sections from resonance parameters; to calculate angular distributions, group average, mixtures of cross-sections, etc; to produce graphical plottings and data comparisons. The codes are designed to operate on virtually any type of computer including PC's. They are available from the IAEA Nuclear Data Section, free of charge upon request, on magnetic tape or a set of HD diskettes. (author)

Nuclear Export of Messenger RNA

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Jun Katahira

2015-03-01

Full Text Available Transport of messenger RNA (mRNA from the nucleus to the cytoplasm is an essential step of eukaryotic gene expression. In the cell nucleus, a precursor mRNA undergoes a series of processing steps, including capping at the 5' ends, splicing and cleavage/polyadenylation at the 3' ends. During this process, the mRNA associates with a wide variety of proteins, forming a messenger ribonucleoprotein (mRNP particle. Association with factors involved in nuclear export also occurs during transcription and processing, and thus nuclear export is fully integrated into mRNA maturation. The coupling between mRNA maturation and nuclear export is an important mechanism for providing only fully functional and competent mRNA to the cytoplasmic translational machinery, thereby ensuring accuracy and swiftness of gene expression. This review describes the molecular mechanism of nuclear mRNA export mediated by the principal transport factors, including Tap-p15 and the TREX complex.

Nuclear Export of Messenger RNA

Science.gov (United States)

Katahira, Jun

2015-01-01

Transport of messenger RNA (mRNA) from the nucleus to the cytoplasm is an essential step of eukaryotic gene expression. In the cell nucleus, a precursor mRNA undergoes a series of processing steps, including capping at the 5' ends, splicing and cleavage/polyadenylation at the 3' ends. During this process, the mRNA associates with a wide variety of proteins, forming a messenger ribonucleoprotein (mRNP) particle. Association with factors involved in nuclear export also occurs during transcription and processing, and thus nuclear export is fully integrated into mRNA maturation. The coupling between mRNA maturation and nuclear export is an important mechanism for providing only fully functional and competent mRNA to the cytoplasmic translational machinery, thereby ensuring accuracy and swiftness of gene expression. This review describes the molecular mechanism of nuclear mRNA export mediated by the principal transport factors, including Tap-p15 and the TREX complex. PMID:25836925

Selective nuclear export of specific classes of mRNA from mammalian nuclei is promoted by GANP

Science.gov (United States)

Wickramasinghe, Vihandha O.; Andrews, Robert; Ellis, Peter; Langford, Cordelia; Gurdon, John B.; Stewart, Murray; Venkitaraman, Ashok R.; Laskey, Ronald A.

2014-01-01

The nuclear phase of the gene expression pathway culminates in the export of mature messenger RNAs (mRNAs) to the cytoplasm through nuclear pore complexes. GANP (germinal- centre associated nuclear protein) promotes the transfer of mRNAs bound to the transport factor NXF1 to nuclear pore complexes. Here, we demonstrate that GANP, subunit of the TRanscription-EXport-2 (TREX-2) mRNA export complex, promotes selective nuclear export of a specific subset of mRNAs whose transport depends on NXF1. Genome-wide gene expression profiling showed that half of the transcripts whose nuclear export was impaired following NXF1 depletion also showed reduced export when GANP was depleted. GANP-dependent transcripts were highly expressed, yet short-lived, and were highly enriched in those encoding central components of the gene expression machinery such as RNA synthesis and processing factors. After injection into Xenopus oocyte nuclei, representative GANP-dependent transcripts showed faster nuclear export kinetics than representative transcripts that were not influenced by GANP depletion. We propose that GANP promotes the nuclear export of specific classes of mRNAs that may facilitate rapid changes in gene expression. PMID:24510098

AthMethPre: a web server for the prediction and query of mRNA m6A sites in Arabidopsis thaliana.

Science.gov (United States)

Xiang, Shunian; Yan, Zhangming; Liu, Ke; Zhang, Yaou; Sun, Zhirong

2016-10-18

N 6 -Methyladenosine (m 6 A) is the most prevalent and abundant modification in mRNA that has been linked to many key biological processes. High-throughput experiments have generated m 6 A-peaks across the transcriptome of A. thaliana, but the specific methylated sites were not assigned, which impedes the understanding of m 6 A functions in plants. Therefore, computational prediction of mRNA m 6 A sites becomes emergently important. Here, we present a method to predict the m 6 A sites for A. thaliana mRNA sequence(s). To predict the m 6 A sites of an mRNA sequence, we employed the support vector machine to build a classifier using the features of the positional flanking nucleotide sequence and position-independent k-mer nucleotide spectrum. Our method achieved good performance and was applied to a web server to provide service for the prediction of A. thaliana m 6 A sites. The server also provides a comprehensive database of predicted transcriptome-wide m 6 A sites and curated m 6 A-seq peaks from the literature for query and visualization. The AthMethPre web server is the first web server that provides a user-friendly tool for the prediction and query of A. thaliana mRNA m 6 A sites, which is freely accessible for public use at .

Presence of albumin mRNA precursors in nuclei of analbuminemic rat liver lacking cytoplasmic albumin mRNA.

OpenAIRE

Esumi, H; Takahashi, Y; Sekiya, T; Sato, S; Nagase, S; Sugimura, T

1982-01-01

Analbuminemic rats, which lack serum albumin, were previously found to have no albumin mRNA in the cytoplasm of the liver. In the present study, the existence of nuclear albumin mRNA precursors in the liver of analbuminemic rats was examined by RNA X cDNA hybridization kinetics. Albumin mRNA precursors were present in the nuclei of analbuminemic rat liver at almost normal levels, despite the absence of albumin mRNA from the cytoplasm. Nuclear RNA of analbuminemic rat liver was subjected to el...

Influence of Pre-Training Predator Stress on the Expression of c-fos mRNA in the Hippocampus, Amygdala, and Striatum Following Long-Term Spatial Memory Retrieval.

Science.gov (United States)

Vanelzakker, Michael B; Zoladz, Phillip R; Thompson, Vanessa M; Park, Collin R; Halonen, Joshua D; Spencer, Robert L; Diamond, David M

2011-01-01

We have studied the influence of pre-training psychological stress on the expression of c-fos mRNA following long-term spatial memory retrieval. Rats were trained to learn the location of a hidden escape platform in the radial-arm water maze, and then their memory for the platform location was assessed 24 h later. Rat brains were extracted 30 min after the 24-h memory test trial for analysis of c-fos mRNA. Four groups were tested: (1) Rats given standard training (Standard); (2) Rats given cat exposure (Predator Stress) 30 min prior to training (Pre-Training Stress); (3) Rats given water exposure only (Water Yoked); and (4) Rats given no water exposure (Home Cage). The Standard trained group exhibited excellent 24 h memory which was accompanied by increased c-fos mRNA in the dorsal hippocampus and basolateral amygdala (BLA). The Water Yoked group exhibited no increase in c-fos mRNA in any brain region. Rats in the Pre-Training Stress group were classified into two subgroups: good and bad memory performers. Neither of the two Pre-Training Stress subgroups exhibited a significant change in c-fos mRNA expression in the dorsal hippocampus or BLA. Instead, stressed rats with good memory exhibited significantly greater c-fos mRNA expression in the dorsolateral striatum (DLS) compared to stressed rats with bad memory. This finding suggests that stressed rats with good memory used their DLS to generate a non-spatial (cue-based) strategy to learn and subsequently retrieve the memory of the platform location. Collectively, these findings provide evidence at a molecular level for the involvement of the hippocampus and BLA in the retrieval of spatial memory and contribute novel observations on the influence of pre-training stress in activating the DLS in response to long-term memory retrieval.

Influence of Pre-Training Predator Stress on the Expression of c-fos mRNA in the Hippocampus, Amygdala and Striatum Following Long-Term Spatial Memory Retrieval

Directory of Open Access Journals (Sweden)

Michael B VanElzakker

2011-06-01

Full Text Available We have studied the influence of pre-training psychological stress on the expression of c-fos mRNA following long-term spatial memory retrieval. Rats were trained to learn the location of a hidden escape platform in the radial-arm water maze, and then their memory for the platform location was assessed 24 hr later. Rat brains were extracted 30 min after the 24 hr memory test trial for analysis of c-fos mRNA. Four groups were tested: 1 Rats given standard training (Standard; 2 Rats given cat exposure (Predator Stress 30 min prior to training (Pre-Training Stress; 3 Rats given water exposure only (Water Yoked; and 4 Rats given no water exposure (Home Cage. The Standard trained group exhibited excellent 24 hr memory which was accompanied by increased c-fos mRNA in the dorsal hippocampus and basolateral amygdala (BLA. The Water Yoked group exhibited no increase in c-fos mRNA in any brain region. Rats in the Pre-Training Stress group were classified into two subgroups: good and bad memory performers. Neither of the two Pre-Training Stress subgroups exhibited a significant change in c-fos mRNA expression in the dorsal hippocampus or BLA. Instead, stressed rats with good memory exhibited significantly greater c-fos mRNA expression in the dorsolateral striatum (DLS compared to stressed rats with bad memory. This finding suggests that stressed rats with good memory used their DLS to generate a non-spatial (cue-based strategy to learn and subsequently retrieve the memory of the platform location. Collectively, these findings provide evidence at a molecular level for the involvement of the hippocampus and BLA in the retrieval of spatial memory and contribute novel observations on the influence of pre-training stress in activating the DLS in response to long-term memory retrieval.

Influence of Pre-Training Predator Stress on the Expression of c-fos mRNA in the Hippocampus, Amygdala, and Striatum Following Long-Term Spatial Memory Retrieval

Science.gov (United States)

VanElzakker, Michael B.; Zoladz, Phillip R.; Thompson, Vanessa M.; Park, Collin R.; Halonen, Joshua D.; Spencer, Robert L.; Diamond, David M.

2011-01-01

We have studied the influence of pre-training psychological stress on the expression of c-fos mRNA following long-term spatial memory retrieval. Rats were trained to learn the location of a hidden escape platform in the radial-arm water maze, and then their memory for the platform location was assessed 24 h later. Rat brains were extracted 30 min after the 24-h memory test trial for analysis of c-fos mRNA. Four groups were tested: (1) Rats given standard training (Standard); (2) Rats given cat exposure (Predator Stress) 30 min prior to training (Pre-Training Stress); (3) Rats given water exposure only (Water Yoked); and (4) Rats given no water exposure (Home Cage). The Standard trained group exhibited excellent 24 h memory which was accompanied by increased c-fos mRNA in the dorsal hippocampus and basolateral amygdala (BLA). The Water Yoked group exhibited no increase in c-fos mRNA in any brain region. Rats in the Pre-Training Stress group were classified into two subgroups: good and bad memory performers. Neither of the two Pre-Training Stress subgroups exhibited a significant change in c-fos mRNA expression in the dorsal hippocampus or BLA. Instead, stressed rats with good memory exhibited significantly greater c-fos mRNA expression in the dorsolateral striatum (DLS) compared to stressed rats with bad memory. This finding suggests that stressed rats with good memory used their DLS to generate a non-spatial (cue-based) strategy to learn and subsequently retrieve the memory of the platform location. Collectively, these findings provide evidence at a molecular level for the involvement of the hippocampus and BLA in the retrieval of spatial memory and contribute novel observations on the influence of pre-training stress in activating the DLS in response to long-term memory retrieval. PMID:21738501

Pre-fire planning for nuclear power plants

International Nuclear Information System (INIS)

Talbert, J.H.

1980-01-01

Regardless of the fire prevention measures which are taken, plant experience indicates that fires will occur in a nuclear power plant. When a fire occurs, the plant staff must handle the fire emergency. Pre-fire planning is a method of developing detailed fire attack plans and salvage operations to protect equipment from damage due to fire and fire fighting operations. This paper describes the purpose and use of a pre-fire plan to achieve these goals in nuclear power plants

Studies of nuclear second moments for pre-equilibrium nuclear reaction theories

International Nuclear Information System (INIS)

Sato, K.; Yoshida, S.

1987-01-01

The nuclear second moments, important inputs to pre-equilibrium reaction theories, are evaluated by assuming a simple model. The positive definite nature of the second moments is examined, and the nuclear level densities are calculated using positive definite second moments. (orig.)

Studies on the role of NonA in mRNA biogenesis

International Nuclear Information System (INIS)

Kozlova, Natalia; Braga, Jose; Lundgren, Josefin; Rino, Jose; Young, Patrick; Carmo-Fonseca, Maria; Visa, Neus

2006-01-01

The NonA protein of Drosophila melanogaster is an abundant nuclear protein that belongs to the DBHS (Drosophila behavior, human splicing) protein family. The DBHS proteins bind both DNA and RNA in vitro and have been involved in different aspects of gene expression, including pre-mRNA splicing, transcription regulation and nuclear retention of mRNA. We have used double-stranded RNA interference in Drosophila S2 cells to silence the expression of NonA and to investigate its role in mRNA biogenesis. We show that knockdown of NonA does not affect transcription nor splicing. We demonstrate that NonA forms a complex with the essential nuclear export factor NXF1 in an RNA-dependent manner. We have constructed stable S2 cell lines that express full-length and truncated NXF1 fused to GFP in order to perform fluorescence recovery after photobleaching experiments. We show that knockdown of NonA reduces the intranuclear mobility of NXF1-GFP associated with poly(A) + RNA in vivo, while the mobility of the truncated NXF1-GFP that does not bind RNA is not affected. Our data suggest that NonA facilitates the intranuclear mobility of mRNP particles

The Clothes Make the mRNA: Past and Present Trends in mRNP Fashion.

Science.gov (United States)

Singh, Guramrit; Pratt, Gabriel; Yeo, Gene W; Moore, Melissa J

2015-01-01

Throughout their lifetimes, messenger RNAs (mRNAs) associate with proteins to form ribonucleoproteins (mRNPs). Since the discovery of the first mRNP component more than 40 years ago, what is known as the mRNA interactome now comprises >1,000 proteins. These proteins bind mRNAs in myriad ways with varying affinities and stoichiometries, with many assembling onto nascent RNAs in a highly ordered process during transcription and precursor mRNA (pre-mRNA) processing. The nonrandom distribution of major mRNP proteins observed in transcriptome-wide studies leads us to propose that mRNPs are organized into three major domains loosely corresponding to 5' untranslated regions (UTRs), open reading frames, and 3' UTRs. Moving from the nucleus to the cytoplasm, mRNPs undergo extensive remodeling as they are first acted upon by the nuclear pore complex and then by the ribosome. When not being actively translated, cytoplasmic mRNPs can assemble into large multi-mRNP assemblies or be permanently disassembled and degraded. In this review, we aim to give the reader a thorough understanding of past and current eukaryotic mRNP research.

Crystal Structure of the HEAT Domain from the Pre-mRNA Processing Factor Symplekin

Energy Technology Data Exchange (ETDEWEB)

Kennedy, Sarah A.; Frazier, Monica L.; Steiniger, Mindy; Mast, Ann M.; Marzluff, William F.; Redinbo, Matthew R.; (UNC)

2010-09-30

The majority of eukaryotic pre-mRNAs are processed by 3'-end cleavage and polyadenylation, although in metazoa the replication-dependent histone mRNAs are processed by 3'-end cleavage but not polyadenylation. The macromolecular complex responsible for processing both canonical and histone pre-mRNAs contains the {approx} 1160-residue protein Symplekin. Secondary-structural prediction algorithms identified putative HEAT domains in the 300 N-terminal residues of all Symplekins of known sequence. The structure and dynamics of this domain were investigated to begin elucidating the role Symplekin plays in mRNA maturation. The crystal structure of the Drosophila melanogaster Symplekin HEAT domain was determined to 2.4 {angstrom} resolution with single-wavelength anomalous dispersion phasing methods. The structure exhibits five canonical HEAT repeats along with an extended 31-amino-acid loop (loop 8) between the fourth and fifth repeat that is conserved within closely related Symplekin sequences. Molecular dynamics simulations of this domain show that the presence of loop 8 dampens correlated and anticorrelated motion in the HEAT domain, therefore providing a neutral surface for potential protein-protein interactions. HEAT domains are often employed for such macromolecular contacts. The Symplekin HEAT region not only structurally aligns with several established scaffolding proteins, but also has been reported to contact proteins essential for regulating 3'-end processing. Together, these data support the conclusion that the Symplekin HEAT domain serves as a scaffold for protein-protein interactions essential to the mRNA maturation process.

Identification of a chemical inhibitor for nuclear speckle formation: Implications for the function of nuclear speckles in regulation of alternative pre-mRNA splicing

Energy Technology Data Exchange (ETDEWEB)

Kurogi, Yutaro; Matsuo, Yota; Mihara, Yuki; Yagi, Hiroaki; Shigaki-Miyamoto, Kaya; Toyota, Syukichi; Azuma, Yuko [Department of Biological Sciences, Graduate School of Science and Technology, Kumamoto University, Chuo-ku, Kumamoto 860-8555 (Japan); Igarashi, Masayuki [Laboratory of Disease Biology, Institute of Microbial Chemistry, Shinagawa-ku, Tokyo 141-0021 (Japan); Tani, Tokio, E-mail: ttani@sci.kumamoto-u.ac.jp [Department of Biological Sciences, Graduate School of Science and Technology, Kumamoto University, Chuo-ku, Kumamoto 860-8555 (Japan)

2014-03-28

Highlights: • We identified tubercidin as a compound inducing aberrant formation of the speckles. • Tubercidin causes delocalization of poly (A){sup +}RNAs from nuclear speckles. • Tubercidin induces dispersion of splicing factors from nuclear speckles. • Tubercidin affects alternative pre-mRNA splicing. • Nuclear speckles play a role in regulation of alternative pre-mRNA splicing. - Abstract: Nuclear speckles are subnuclear structures enriched with RNA processing factors and poly (A){sup +} RNAs comprising mRNAs and poly (A){sup +} non-coding RNAs (ncRNAs). Nuclear speckles are thought to be involved in post-transcriptional regulation of gene expression, such as pre-mRNA splicing. By screening 3585 culture extracts of actinomycetes with in situ hybridization using an oligo dT probe, we identified tubercidin, an analogue of adenosine, as an inhibitor of speckle formation, which induces the delocalization of poly (A){sup +} RNA and dispersion of splicing factor SRSF1/SF2 from nuclear speckles in HeLa cells. Treatment with tubercidin also decreased steady-state MALAT1 long ncRNA, thought to be involved in the retention of SRSF1/SF2 in nuclear speckles. In addition, we found that tubercidin treatment promoted exon skipping in the alternative splicing of Clk1 pre-mRNA. These results suggest that nuclear speckles play a role in modulating the concentration of splicing factors in the nucleoplasm to regulate alternative pre-mRNA splicing.

HIV-1 matrix dependent membrane targeting is regulated by Gag mRNA trafficking.

Directory of Open Access Journals (Sweden)

Jing Jin

Full Text Available Retroviral Gag polyproteins are necessary and sufficient for virus budding. Productive HIV-1 Gag assembly takes place at the plasma membrane. However, little is known about the mechanisms by which thousands of Gag molecules are targeted to the plasma membrane. Using a bimolecular fluorescence complementation (BiFC assay, we recently reported that the cellular sites and efficiency of HIV-1 Gag assembly depend on the precise pathway of Gag mRNA export from the nucleus, known to be mediated by Rev. Here we describe an assembly deficiency in human cells for HIV Gag whose expression depends on hepatitis B virus (HBV post-transcriptional regulatory element (PRE mediated-mRNA nuclear export. PRE-dependent HIV Gag expressed well in human cells, but assembled with slower kinetics, accumulated intracellularly, and failed to associate with a lipid raft compartment where the wild-type Rev-dependent HIV-1 Gag efficiently assembles. Surprisingly, assembly and budding of PRE-dependent HIV Gag in human cells could be rescued in trans by co-expression of Rev-dependent Gag that provides correct membrane targeting signals, or in cis by replacing HIV matrix (MA with other membrane targeting domains. Taken together, our results demonstrate deficient membrane targeting of PRE-dependent HIV-1 Gag and suggest that HIV MA function is regulated by the trafficking pathway of the encoding mRNA.

NMTC/JAM, Simulates High Energy Nuclear Reactions and Nuclear-Meson Transport Processes

International Nuclear Information System (INIS)

Furihata, Shiori

2002-01-01

1 - Description of program or function: NMTC/JAM is an upgraded version of the code system NMTC/JAERI97. NMTC/JAERI97 simulates high energy nuclear reactions and nucleon-meson transport processes. It implements an intra-nuclear cascade model taking account of the in-medium nuclear effects and the pre-equilibrium calculation model based on the exciton one. For treating the nucleon transport process, the nucleon-nucleus cross sections are revised to those derived by the systematics of Pearlstein. Moreover, the level density parameter derived by Ignatyuk is included as a new option for particle evaporation calculation. A geometry package based on the Combinatorial Geometry with multi-array system and the importance sampling technique is implemented in the code. Tally function is also employed for obtaining such physical quantities as neutron energy spectra, heat deposition and nuclide yield without editing a history file. The code can simulate both the primary spallation reaction and the secondary particle transport in the intermediate energy region from 20 MeV to 3.5 GeV by the use of the Monte Carlo technique. The code has been employed in combination with the neutron-photon transport codes available to the energy region below 20 MeV for neutronics calculation of accelerator-based subcritical reactors, analyses of thick target spallation experimented and so on. 2 - Methods: High energy nuclear reactions induced by incident high energy protons, neutrons and pions are simulated with the Monte Carlo Method by the intra-nuclear nucleon-nucleon reaction probabilities based on an intra-nuclear nucleon cascade model followed by the particle evaporation including high energy fission process. Jet-Aa Microscopic transport model (JAM) is employed to simulate high energy nuclear reactions in the energy range of GeV. All reaction channels are taken into account in the JAM calculation. An intra-nuclear cascade model (ISOBAR code) taking account of the in-medium nuclear effects

Nuclear trafficking of the HIV-1 pre-integration complex depends on the ADAM10 intracellular domain

International Nuclear Information System (INIS)

Endsley, Mark A.; Somasunderam, Anoma D.; Li, Guangyu; Oezguen, Numan; Thiviyanathan, Varatharasa; Murray, James L.; Rubin, Donald H.; Hodge, Thomas W.

2014-01-01

Previously, we showed that ADAM10 is necessary for HIV-1 replication in primary human macrophages and immortalized cell lines. Silencing ADAM10 expression interrupted the HIV-1 life cycle prior to nuclear translocation of viral cDNA. Furthermore, our data indicated that HIV-1 replication depends on the expression of ADAM15 and γ-secretase, which proteolytically processes ADAM10. Silencing ADAM15 or γ-secretase expression inhibits HIV-1 replication between reverse transcription and nuclear entry. Here, we show that ADAM10 expression also supports replication in CD4 + T lymphocytes. The intracellular domain (ICD) of ADAM10 associates with the HIV-1 pre-integration complex (PIC) in the cytoplasm and immunoprecipitates and co-localizes with HIV-1 integrase, a key component of PIC. Taken together, our data support a model whereby ADAM15/γ-secretase processing of ADAM10 releases the ICD, which then incorporates into HIV-1 PIC to facilitate nuclear trafficking. Thus, these studies suggest ADAM10 as a novel therapeutic target for inhibiting HIV-1 prior to nuclear entry. - Highlights: • Nuclear trafficking of the HIV-1 pre-integration complex depends on ADAM10. • ADAM10 associates with HIV-1 integrase in the pre-integration complex. • HIV-1 replication depends on the expression of ADAM15 and γ-secretase. • Silencing ADAM15 or γ-secretase expression inhibits nuclear import of viral cDNA. • ADAM10 is important for HIV-1 replication in human macrophages and CD4 + T lymphocytes

Nuclear trafficking of the HIV-1 pre-integration complex depends on the ADAM10 intracellular domain

Energy Technology Data Exchange (ETDEWEB)

Endsley, Mark A., E-mail: maendsle@utmb.edu [Department Internal Medicine, Division of Infectious Diseases, University of Texas Medical Branch, 301 University Blvd, Galveston, TX 77555 (United States); Somasunderam, Anoma D., E-mail: asomasun@utmb.edu [Department Internal Medicine, Division of Infectious Diseases, University of Texas Medical Branch, 301 University Blvd, Galveston, TX 77555 (United States); Li, Guangyu, E-mail: LIG001@mail.etsu.edu [Department of Internal Medicine, Quillen College of Medicine, East Tennessee State University, Johnson City, TN 37614 (United States); Oezguen, Numan, E-mail: numan.oezguen@bcm.edu [Department of Pathology and Immunology, Microbiome Center, Texas Children' s Hospital, Houston, TX 77030 (United States); Thiviyanathan, Varatharasa, E-mail: Varatharasa.Thiviyanathan@uth.tmc.edu [Institute of Molecular Medicine, University of Texas Health Science Center, Houston, TX 77030 (United States); Murray, James L., E-mail: jmurray100@yahoo.com [GeneTAG Technology, Inc., 3155 Northwoods Place, Norcross, GA 30071 (United States); Rubin, Donald H., E-mail: don.h.rubin@vanderbilt.edu [Research Medicine, VA Tennessee Valley Healthcare System, 1310 24th Ave. South, Nashville, TN 37212 (United States); Departments of Medicine, Pathology, Microbiology and Immunology, Vanderbilt University School of Medicine, 1161 21st Ave South, Nashville, TN 37232 (United States); Hodge, Thomas W., E-mail: twhodge3@gmail.com [Pre-clinical and Antiviral Research, Tamir Biotechnology, Inc., 12625 High Bluff Dr., Suite 113, San Diego, CA 92130 (United States); and others

2014-04-15

Previously, we showed that ADAM10 is necessary for HIV-1 replication in primary human macrophages and immortalized cell lines. Silencing ADAM10 expression interrupted the HIV-1 life cycle prior to nuclear translocation of viral cDNA. Furthermore, our data indicated that HIV-1 replication depends on the expression of ADAM15 and γ-secretase, which proteolytically processes ADAM10. Silencing ADAM15 or γ-secretase expression inhibits HIV-1 replication between reverse transcription and nuclear entry. Here, we show that ADAM10 expression also supports replication in CD4{sup +} T lymphocytes. The intracellular domain (ICD) of ADAM10 associates with the HIV-1 pre-integration complex (PIC) in the cytoplasm and immunoprecipitates and co-localizes with HIV-1 integrase, a key component of PIC. Taken together, our data support a model whereby ADAM15/γ-secretase processing of ADAM10 releases the ICD, which then incorporates into HIV-1 PIC to facilitate nuclear trafficking. Thus, these studies suggest ADAM10 as a novel therapeutic target for inhibiting HIV-1 prior to nuclear entry. - Highlights: • Nuclear trafficking of the HIV-1 pre-integration complex depends on ADAM10. • ADAM10 associates with HIV-1 integrase in the pre-integration complex. • HIV-1 replication depends on the expression of ADAM15 and γ-secretase. • Silencing ADAM15 or γ-secretase expression inhibits nuclear import of viral cDNA. • ADAM10 is important for HIV-1 replication in human macrophages and CD4{sup +} T lymphocytes.

Clinical values of AFP, GPC3 mRNA in peripheral blood for prediction of hepatocellular carcinoma recurrence following OLT: AFP, GPC3 mRNA for prediction of HCC.

Science.gov (United States)

Wang, Yuliang; Shen, Zhongyang; Zhu, Zhijun; Han, Ruifa; Huai, Mingsheng

2011-03-01

Hepatocellular carcinoma (HCC) is one of the most common malignancies worldwide. Annually, about 200,000 patients died of HCC in China. Liver transplantation (LT) holds great theoretical appeal in treating HCC. However, the high recurrence rate after transplantation is the most important limiting factor for long-term survival. To assess the value of alpha-fetoprotein (AFP) messenger RNA (mRNA), Glypican-3 (GPC3) mRNA-expressing cells in the peripheral blood (PB) for prediction of HCC recurrence following orthotopic liver transplantation (OLT). 29 patients with HCC who underwent OLT with a minimum clinical follow-up of 12 months were included in this retrospective study. We detected AFP mRNA, GPC3 mRNA-expressing cells in the PB by TaqMan real-time reverse transcriptase-polymerase chain reaction (RT-PCR), pre-, intra- and post-operatively. The early recurrence of patients was evaluated. 8 (28%), 15 (52%), and 9 (31%) patients had AFP mRNA detected pre-, intra-, and post-operatively, respectively. With 12 months of follow-up, HCC recurred in 7 (24%) patients. Univariate analysis revealed that positive pre- and post-operative AFP mRNA, TNM stage as well as vascular invasion were significant predictors for the HCC recurrence. Multivariate analysis revealed that being positive for AFP mRNA pre-operatively remained a significant risk factor for HCC recurrence after OLT. GPC3 mRNA was expressed in all PB samples. There was no significant difference in the expression levels of GPC3 mRNA between the HCC and control groups. There were no significant differences in GPC3 mRNA expression values between those patients with and without tumor recurrence. The pre-operative detection of circulating AFP mRNA-expressing cells could be a useful predictor for HCC recurrence following OLT. GPC3 mRNA-expressing cells in PB seem to have no diagnostic value.

Interactions between mRNA export commitment, 3'-end quality control, and nuclear degradation

DEFF Research Database (Denmark)

Libri, Domenico; Dower, Ken; Boulay, Jocelyne

2002-01-01

Several aspects of eukaryotic mRNA processing are linked to transcription. In Saccharomyces cerevisiae, overexpression of the mRNA export factor Sub2p suppresses the growth defect of hpr1 null cells, yet the protein Hpr1p and the associated THO protein complex are implicated in transcriptional el...... results show that several classes of defective RNPs are subject to a quality control step that impedes release from transcription site foci and suggest that suboptimal messenger ribonucleoprotein assembly leads to RNA degradation by Rrp6p....

Pre-processing of input files for the AZTRAN code

International Nuclear Information System (INIS)

Vargas E, S.; Ibarra, G.

2017-09-01

The AZTRAN code began to be developed in the Nuclear Engineering Department of the Escuela Superior de Fisica y Matematicas (ESFM) of the Instituto Politecnico Nacional (IPN) with the purpose of numerically solving various models arising from the physics and engineering of nuclear reactors. The code is still under development and is part of the AZTLAN platform: Development of a Mexican platform for the analysis and design of nuclear reactors. Due to the complexity to generate an input file for the code, a script based on D language is developed, with the purpose of making its elaboration easier, based on a new input file format which includes specific cards, which have been divided into two blocks, mandatory cards and optional cards, including a pre-processing of the input file to identify possible errors within it, as well as an image generator for the specific problem based on the python interpreter. (Author)

New insights into pre-lithiation kinetics of graphite anodes via nuclear magnetic resonance spectroscopy

Science.gov (United States)

Holtstiege, Florian; Schmuch, Richard; Winter, Martin; Brunklaus, Gunther; Placke, Tobias

2018-02-01

Pre-lithiation of anode materials can be an effective method to compensate active lithium loss which mainly occurs in the first few cycles of a lithium ion battery (LIB), due to electrolyte decomposition and solid electrolyte interphase (SEI) formation at the surface of the anode. There are many different pre-lithiation methods, whereas pre-lithiation using metallic lithium constitutes the most convenient and widely utilized lab procedure in literature. In this work, for the first time, solid state nuclear magnetic resonance spectroscopy (NMR) is applied to monitor the reaction kinetics of the pre-lithiation process of graphite with lithium. Based on static 7Li NMR, we can directly observe both the dissolution of lithium metal and parallel formation of LiCx species in the obtained NMR spectra with time. It is also shown that the degree of pre-lithiation as well as distribution of lithium metal on the electrode surface have a strong impact on the reaction kinetics of the pre-lithiation process and on the remaining amount of lithium metal. Overall, our findings are highly important for further optimization of pre-lithiation methods for LIB anode materials, both in terms of optimized pre-lithiation time and appropriate amounts of lithium metal.

Nuclear choice: are health and safety issues pre-empted

International Nuclear Information System (INIS)

Henderson, G.B. II.

1980-01-01

This article examines the scope of the NRC's regulatory jurisdiction under the Atomic Energy Act in order to determine its proper effect on state siting laws. At the outset, a brief history of federal regulation of commercial nuclear power plants is set forth, and the cases that have dealt with the pre-emption issue in this area are reviewed. Next, an examination of the doctrine of federal pre-emption is conducted, focussing on the legal principles as they have been developed by the Supreme Court. Since the application of the pre-emption doctrine turns largely on the intent of Congress, the Atomic Energy Act and other pertinent federal legislation are examined to discern how far Congress has sought to extend its power over regulation of nuclear power. Some policy questions are also explored to determine whether it is appropriate to imply an intent on the part of Congress to pre-empt the field. Finally, a conclusion having been reached, the practical problems of what types of evidence may be admitted into the state siting agency's hearing are discussed and some solutions offered

RNA-induced silencing complex (RISC) Proteins PACT, TRBP, and Dicer are SRA binding nuclear receptor coregulators.

Science.gov (United States)

Redfern, Andrew D; Colley, Shane M; Beveridge, Dianne J; Ikeda, Naoya; Epis, Michael R; Li, Xia; Foulds, Charles E; Stuart, Lisa M; Barker, Andrew; Russell, Victoria J; Ramsay, Kerry; Kobelke, Simon J; Li, Xiaotao; Hatchell, Esme C; Payne, Christine; Giles, Keith M; Messineo, Adriana; Gatignol, Anne; Lanz, Rainer B; O'Malley, Bert W; Leedman, Peter J

2013-04-16

The cytoplasmic RNA-induced silencing complex (RISC) contains dsRNA binding proteins, including protein kinase RNA activator (PACT), transactivation response RNA binding protein (TRBP), and Dicer, that process pre-microRNAs into mature microRNAs (miRNAs) that target specific mRNA species for regulation. There is increasing evidence for important functional interactions between the miRNA and nuclear receptor (NR) signaling networks, with recent data showing that estrogen, acting through the estrogen receptor, can modulate initial aspects of nuclear miRNA processing. Here, we show that the cytoplasmic RISC proteins PACT, TRBP, and Dicer are steroid receptor RNA activator (SRA) binding NR coregulators that target steroid-responsive promoters and regulate NR activity and downstream gene expression. Furthermore, each of the RISC proteins, together with Argonaute 2, associates with SRA and specific pre-microRNAs in both the nucleus and cytoplasm, providing evidence for links between NR-mediated transcription and some of the factors involved in miRNA processing.

Consequences of metaphase II oocyte cryopreservation on mRNA content.

Science.gov (United States)

Chamayou, S; Bonaventura, G; Alecci, C; Tibullo, D; Di Raimondo, F; Guglielmino, A; Barcellona, M L

2011-04-01

We studied the consequences of freezing/thawing processes on mRNA contents in MII oocytes after slow-freezing/rapid thawing (SF/RT) and vitrification/warming (V/W) protocols, and compared the results to fresh MII oocytes. We quantified the nuclear transcript mRNA responsible for the translation of proteins belonging either to trans-regulatory protein family or to functional structural proteins such as proteins involved in DNA structural organization (NAP1L1, TOP1, H1F0H1), chromosomal structure maintenance (SMC, SCC3, RAD21, SMC1A, SMC1B, STAG3, REC8), mitochondrial energetic pathways (ATP5GJ, SDHC), cell cycle regulation and processes (CLTA, MAPK6, CKS2) and staminal cell potency-development competence stage (DPPA3, OCT4, FOXJ2). Surplus MII oocytes were donated from patients in IVF cycles and divided in three groups of 15 oocytes. Group 1 was comprised of non-cryopreserved oocytes and Groups 2 and 3 underwent SF/RT and V/W procedures, respectively. There was an overall decrease of mRNA extracted from cryopreserved oocytes compared to control group. Only 39.4% of mRNA content were preserved after SF/RT while 63.3% of mRNA content were maintained after V/W. Oocyte cryopreservation is associated with molecular injury associated with the decrease of stored mRNA. However the V/W protocol is more conservative than SF/RT resulting in a level of mRNA sufficient to maintain biologic functions in the subsequent fertilized oocyte. Copyright © 2011 Elsevier Inc. All rights reserved.

Degradation of YRA1 Pre-mRNA in the cytoplasm requires translational repression, multiple modular intronic elements, Edc3p, and Mex67p.

Directory of Open Access Journals (Sweden)

Shuyun Dong

2010-04-01

Full Text Available Intron-containing pre-mRNAs are normally retained and processed in the nucleus but are sometimes exported to the cytoplasm and degraded by the nonsense-mediated mRNA decay (NMD pathway as a consequence of their inclusion of intronic in-frame termination codons. When shunted to the cytoplasm by autoregulated nuclear export, the intron-containing yeast YRA1 pre-mRNA evades NMD and is targeted by a cytoplasmic decay pathway mediated by the decapping activator Edc3p. Here, we have elucidated this transcript-specific decay mechanism, showing that Edc3p-mediated YRA1 pre-mRNA degradation occurs independently of translation and is controlled through five structurally distinct but functionally interdependent modular elements in the YRA1 intron. Two of these elements target the pre-mRNA as an Edc3p substrate and the other three mediate transcript-specific translational repression. Translational repression of YRA1 pre-mRNA also requires the heterodimeric Mex67p/Mtr2p general mRNA export receptor, but not Edc3p, and serves to enhance Edc3p substrate specificity by inhibiting the susceptibility of this pre-mRNA to NMD. Collectively, our data indicate that YRA1 pre-mRNA degradation is a highly regulated process that proceeds through translational repression, substrate recognition by Edc3p, recruitment of the Dcp1p/Dcp2p decapping enzyme, and activation of decapping.

LAMMER kinase Kic1 is involved in pre-mRNA processing

International Nuclear Information System (INIS)

Tang, Zhaohua; Luca, Maria; Portillio, Jessica; Ngo, Benson; Chang, Cathey; Wen, Teresa; Murray, Johanne; Carr, Antony

2011-01-01

The LAMMER kinases are conserved through evolution. They play vital roles in cell growth/differentiation, development, and metabolism. One of the best known functions of the kinases in animal cells is the regulation of pre-mRNA splicing. Kic1 is the LAMMER kinase in fission yeast Schizosaccharomyces pombe. Despite the reported pleiotropic effects of kic1 + deletion/overexpression on various cellular processes the involvement of Kic1 in splicing remains elusive. In this study, we demonstrate for the first time that Kic1 not only is required for efficient splicing but also affects mRNA export, providing evidence for the conserved roles of LAMMER kinases in the unicellular context of fission yeast. Consistent with the hypothesis of its direct participation in multiple steps of pre-mRNA processing, Kic1 is predominantly present in the nucleus during interphase. In addition, the kinase activity of Kic1 plays a role in modulating its own cellular partitioning. Interestingly, Kic1 expression oscillates in a cell cycle-dependent manner and the peak level coincides with mitosis and cytokinesis, revealing a potential mechanism for controlling the kinase activity during the cell cycle. The novel information about the in vivo functions and regulation of Kic1 offers insights into the conserved biological roles fundamental to LAMMER kinases in eukaryotes.

A non-inflammatory form of immune competence prevails in acute pre-pubescent malnutrition: new evidence based on critical mRNA transcripts in the mouse.

Science.gov (United States)

Monk, Jennifer M; Richard, Cynthia L; Woodward, Bill

2012-05-01

The declining inflammatory immune competence of acute (i.e. wasting) pre-pubescent protein-energy malnutrition has been regarded as reflecting an unregulated immunological disintegration. Recent evidence, however, suggests that malnutrition stimulates a regulated immunological reconfiguration to achieve a non-inflammatory form of competence, perhaps offering protection against autoimmune reactions - the 'Tolerance Model'. Our objective was to determine the influence of acute pre-pubescent malnutrition on the expression of genes critical to tolerogenic regulation. Male and female C57BL/6J mice, initially 19 d old, consumed a complete purified diet either ad libitum (age-matched controls) or in restricted daily quantities (mimicking marasmus), or consumed an isoenergetic low-protein diet ad libitum (mimicking incipient kwashiorkor) for 14 d (six animals per dietary group). Gene expression in the spleen, typically an inflammatory organ, and in the small intestine, a site designed for non-inflammatory defence, was assessed by real-time quantitative RT-PCR, and normalised to β-actin. In the spleen of the malnourished groups, both IL-10 and transforming growth factor-β1 mRNA expression increased compared with controls (P 0.05). Moreover, forkhead box P3 mRNA expression, indicative of cell-based tolerogenic potential, was sustained in both the spleen and intestine of the malnourished groups (P>0.05). Thus, despite limited supplies of energy and substrates, the spleen shifted towards a non-inflammatory character and the intestine was sustained in this mode in advanced pre-pubescent weight loss. These findings provide the first support for the Tolerance Model at the level of mRNA transcript expression.

A biochemical framework for eIF4E-dependent mRNA export and nuclear recycling of the export machinery.

Science.gov (United States)

Volpon, Laurent; Culjkovic-Kraljacic, Biljana; Sohn, Hye Seon; Blanchet-Cohen, Alexis; Osborne, Michael J; Borden, Katherine L B

2017-06-01

The eukaryotic translation initiation factor eIF4E acts in the nuclear export and translation of a subset of mRNAs. Both of these functions contribute to its oncogenic potential. While the biochemical mechanisms that underlie translation are relatively well understood, the molecular basis for eIF4E's role in mRNA export remains largely unexplored. To date, over 3000 transcripts, many encoding oncoproteins, were identified as potential nuclear eIF4E export targets. These target RNAs typically contain a ∼50-nucleotide eIF4E sensitivity element (4ESE) in the 3' UTR and a 7-methylguanosine cap on the 5' end. While eIF4E associates with the cap, an unknown factor recognizes the 4ESE element. We previously identified cofactors that functionally interacted with eIF4E in mammalian cell nuclei including the leucine-rich pentatricopeptide repeat protein LRPPRC and the export receptor CRM1/XPO1. LRPPRC simultaneously interacts with both eIF4E bound to the 5' mRNA cap and the 4ESE element in the 3' UTR. In this way, LRPPRC serves as a specificity factor to recruit 4ESE-containing RNAs within the nucleus. Further, we show that CRM1 directly binds LRPPRC likely acting as the export receptor for the LRPPRC-eIF4E-4ESE RNA complex. We also found that Importin 8, the nuclear importer for cap-free eIF4E, imports RNA-free LRPPRC, potentially providing both coordinated nuclear recycling of the export machinery and an important surveillance mechanism to prevent futile export cycles. Our studies provide the first biochemical framework for the eIF4E-dependent mRNA export pathway. © 2017 Volpon et al.; Published by Cold Spring Harbor Laboratory Press for the RNA Society.

Standard protocol for conducting pre-operational environmental surveillance around nuclear facilities

International Nuclear Information System (INIS)

Hegde, A.G.; Verma, P.C.; Rajan, M.P.

2009-02-01

This document presents the standard procedures for evaluation of site specific environmental transfer factors around NPP sites. The scope of this document is to provide standard protocol to be followed for conducting pre-operational environmental surveillance around nuclear facilities. Such surveillances have been proposed to be carried out by university professionals under DAE-BRNS projects. This document contains a common methodology in terms of sampling, processing, measurements and analysis of elemental/radionuclides, while keeping the site specific requirements also in place. (author)

Standard protocol for conducting pre-operational environmental surveillance around nuclear facilities

Energy Technology Data Exchange (ETDEWEB)

Hegde, A G; Verma, P C; Rajan, M P [Health Safety and Environment Group, Bhabha Atomic Research Centre, Mumbai (India)

2009-02-15

This document presents the standard procedures for evaluation of site specific environmental transfer factors around NPP sites. The scope of this document is to provide standard protocol to be followed for conducting pre-operational environmental surveillance around nuclear facilities. Such surveillances have been proposed to be carried out by university professionals under DAE-BRNS projects. This document contains a common methodology in terms of sampling, processing, measurements and analysis of elemental/radionuclides, while keeping the site specific requirements also in place. (author)

Characterization of 16S rRNA Processing with Pre-30S Subunit Assembly Intermediates from E. coli.

Science.gov (United States)

Smith, Brian A; Gupta, Neha; Denny, Kevin; Culver, Gloria M

2018-06-08

Ribosomal RNA (rRNA) is a major component of ribosomes and is fundamental to the process of translation. In bacteria, 16S rRNA is a component of the small ribosomal subunit and plays a critical role in mRNA decoding. rRNA maturation entails the removal of intervening spacer sequences contained within the pre-rRNA transcript by nucleolytic enzymes. Enzymatic activities involved in maturation of the 5'-end of 16S rRNA have been identified, but those involved in 3'-end maturation of 16S rRNA are more enigmatic. Here, we investigate molecular details of 16S rRNA maturation using purified in vivo-formed small subunit (SSU) assembly intermediates (pre-SSUs) from wild-type Escherichia coli that contain precursor 16S rRNA (17S rRNA). Upon incubation of pre-SSUs with E. coli S100 cell extracts or purified enzymes implicated in 16S rRNA processing, the 17S rRNA is processed into additional intermediates and mature 16S rRNA. These results illustrate that exonucleases RNase R, RNase II, PNPase, and RNase PH can process the 3'-end of pre-SSUs in vitro. However, the endonuclease YbeY did not exhibit nucleolytic activity with pre-SSUs under these conditions. Furthermore, these data demonstrate that multiple pathways facilitate 16S rRNA maturation with pre-SSUs in vitro, with the dominant pathways entailing complete processing of the 5'-end of 17S rRNA prior to 3'-end maturation or partial processing of the 5'-end with concomitant processing of the 3'-end. These results reveal the multifaceted nature of SSU biogenesis and suggest that E. coli may be able to escape inactivation of any one enzyme by using an existing complementary pathway. Copyright © 2018 Elsevier Ltd. All rights reserved.

ENDF/B Pre-Processing Codes: Implementing and testing on a Personal Computer

International Nuclear Information System (INIS)

McLaughlin, P.K.

1987-05-01

This document describes the contents of the diskettes containing the ENDF/B Pre-Processing codes by D.E. Cullen, and example data for use in implementing and testing these codes on a Personal Computer of the type IBM-PC/AT. Upon request the codes are available from the IAEA Nuclear Data Section, free of charge, on a series of 7 diskettes. (author)

Depletion of key protein components of the RISC pathway impairs pre-ribosomal RNA processing.

Science.gov (United States)

Liang, Xue-Hai; Crooke, Stanley T

2011-06-01

Little is known about whether components of the RNA-induced silencing complex (RISC) mediate the biogenesis of RNAs other than miRNA. Here, we show that depletion of key proteins of the RISC pathway by antisense oligonucleotides significantly impairs pre-rRNA processing in human cells. In cells depleted of Drosha or Dicer, different precursors to 5.8S rRNA strongly accumulated, without affecting normal endonucleolytic cleavages. Moderate yet distinct processing defects were also observed in Ago2-depleted cells. Physical links between pre-rRNA and these proteins were identified by co-immunoprecipitation analyses. Interestingly, simultaneous depletion of Dicer and Drosha led to a different processing defect, causing slower production of 28S rRNA and its precursor. Both Dicer and Ago2 were detected in the nuclear fraction, and reduction of Dicer altered the structure of the nucleolus, where pre-rRNA processing occurs. Together, these results suggest that Drosha and Dicer are implicated in rRNA biogenesis.

Ddx19 links mRNA nuclear export with progression of transcription and replication and suppresses genomic instability upon DNA damage in proliferating cells.

Science.gov (United States)

Hodroj, Dana; Serhal, Kamar; Maiorano, Domenico

2017-09-03

The DEAD-box Helicase 19 (Ddx19) gene codes for an RNA helicase involved in both mRNA (mRNA) export from the nucleus into the cytoplasm and in mRNA translation. In unperturbed cells, Ddx19 localizes in the cytoplasm and at the cytoplasmic face of the nuclear pore. Here we review recent findings related to an additional Ddx19 function in the nucleus in resolving RNA:DNA hybrids (R-loops) generated during collision between transcription and replication, and upon DNA damage. Activation of a DNA damage response pathway dependent upon the ATR kinase, a major regulator of replication fork progression, stimulates translocation of the Ddx19 protein from the cytoplasm into the nucleus. Only nuclear Ddx19 is competent to resolve R-loops, and down regulation of Ddx19 expression induces DNA double strand breaks only in proliferating cells. Overall these observations put forward Ddx19 as an important novel mediator of the crosstalk between transcription and replication.

Safety Culture in Pre-operational Phases of Nuclear Power Plant Projects

Energy Technology Data Exchange (ETDEWEB)

NONE

2012-09-15

An abundance of information exists on safety culture related to the operational phases of nuclear power plants; however, pre-operational phases present unique challenges. This publication focuses on safety culture during pre-operational phases that span the interval from before a decision to launch a nuclear power programme to first fuel load. It provides safety culture insights and focuses on eight generic issues: safety culture understanding; multicultural aspects; leadership; competencies and resource competition; management systems; learning and feedback; cultural assessments; and communication. Each issue is discussed in terms of: specific challenges; desired state; approaches and methods; and examples and resources. This publication will be of interest to newcomers and experienced individuals faced with the opportunities and challenges inherent in safety culture programmes aimed at pre-operational activities.

Safety Culture in Pre-operational Phases of Nuclear Power Plant Projects

International Nuclear Information System (INIS)

2012-01-01

An abundance of information exists on safety culture related to the operational phases of nuclear power plants; however, pre-operational phases present unique challenges. This publication focuses on safety culture during pre-operational phases that span the interval from before a decision to launch a nuclear power programme to first fuel load. It provides safety culture insights and focuses on eight generic issues: safety culture understanding; multicultural aspects; leadership; competencies and resource competition; management systems; learning and feedback; cultural assessments; and communication. Each issue is discussed in terms of: specific challenges; desired state; approaches and methods; and examples and resources. This publication will be of interest to newcomers and experienced individuals faced with the opportunities and challenges inherent in safety culture programmes aimed at pre-operational activities.

Antisense targeting of 3' end elements involved in DUX4 mRNA processing is an efficient therapeutic strategy for facioscapulohumeral dystrophy: a new gene-silencing approach.

Science.gov (United States)

Marsollier, Anne-Charlotte; Ciszewski, Lukasz; Mariot, Virginie; Popplewell, Linda; Voit, Thomas; Dickson, George; Dumonceaux, Julie

2016-04-15

Defects in mRNA 3'end formation have been described to alter transcription termination, transport of the mRNA from the nucleus to the cytoplasm, stability of the mRNA and translation efficiency. Therefore, inhibition of polyadenylation may lead to gene silencing. Here, we choose facioscapulohumeral dystrophy (FSHD) as a model to determine whether or not targeting key 3' end elements involved in mRNA processing using antisense oligonucleotide drugs can be used as a strategy for gene silencing within a potentially therapeutic context. FSHD is a gain-of-function disease characterized by the aberrant expression of the Double homeobox 4 (DUX4) transcription factor leading to altered pathogenic deregulation of multiple genes in muscles. Here, we demonstrate that targeting either the mRNA polyadenylation signal and/or cleavage site is an efficient strategy to down-regulate DUX4 expression and to decrease the abnormally high-pathological expression of genes downstream of DUX4. We conclude that targeting key functional 3' end elements involved in pre-mRNA to mRNA maturation with antisense drugs can lead to efficient gene silencing and is thus a potentially effective therapeutic strategy for at least FSHD. Moreover, polyadenylation is a crucial step in the maturation of almost all eukaryotic mRNAs, and thus all mRNAs are virtually eligible for this antisense-mediated knockdown strategy. © The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Identification and characterization of protein interactions in the mammalian mRNA processing body using a novel two-hybrid assay

Energy Technology Data Exchange (ETDEWEB)

Bloch, Donald B., E-mail: bloch@helix.mgh.harvard.edu; Nobre, Rita A.; Bernstein, Gillian A.; Yang, Wei-Hong

2011-09-10

Components of the mRNA processing body (P-body) regulate critical steps in mRNA storage, transport, translation and degradation. At the core of the P-body is the decapping complex, which removes the 5' cap from de-adenylated mRNAs and mediates an irreversible step in mRNA degradation. The assembly of P-bodies in Saccharomyces cerevisiae, Arabidopsis thaliana and Drosophila melanogaster has been previously described. Less is known about the assembly of mammalian P-bodies. To investigate the interactions that occur between components of mammalian P-bodies, we developed a fluorescence-based, two-hybrid assay system. The assay depends on the ability of one P-body component, fused to an exogenous nuclear localization sequence (NLS), to recruit other P-body components to the nucleus. The assay was used to investigate interactions between P-body components Ge-1, DCP2, DCP1, EDC3, RAP55, and RCK. The results of this study show that the modified two-hybrid assay can be used to identify protein interactions that occur in a macromolecular complex. The assay can also be used to efficiently detect protein interaction domains. The results provide important insights into mammalian P-body assembly and demonstrate similarities, and critical differences, between P-body assembly in mammalian cells compared with that of other species. -- Research highlights: {yields} A two-hybrid assay was developed to study interactions in macromolecular complexes. {yields} The assay was applied to interactions between components of mRNA P-bodies. {yields} The assay effectively and efficiently identified protein interaction domains. {yields} P-body assembly in mammalian cells differs from that in other species.

Identification and characterization of protein interactions in the mammalian mRNA processing body using a novel two-hybrid assay

International Nuclear Information System (INIS)

Bloch, Donald B.; Nobre, Rita A.; Bernstein, Gillian A.; Yang, Wei-Hong

2011-01-01

Components of the mRNA processing body (P-body) regulate critical steps in mRNA storage, transport, translation and degradation. At the core of the P-body is the decapping complex, which removes the 5' cap from de-adenylated mRNAs and mediates an irreversible step in mRNA degradation. The assembly of P-bodies in Saccharomyces cerevisiae, Arabidopsis thaliana and Drosophila melanogaster has been previously described. Less is known about the assembly of mammalian P-bodies. To investigate the interactions that occur between components of mammalian P-bodies, we developed a fluorescence-based, two-hybrid assay system. The assay depends on the ability of one P-body component, fused to an exogenous nuclear localization sequence (NLS), to recruit other P-body components to the nucleus. The assay was used to investigate interactions between P-body components Ge-1, DCP2, DCP1, EDC3, RAP55, and RCK. The results of this study show that the modified two-hybrid assay can be used to identify protein interactions that occur in a macromolecular complex. The assay can also be used to efficiently detect protein interaction domains. The results provide important insights into mammalian P-body assembly and demonstrate similarities, and critical differences, between P-body assembly in mammalian cells compared with that of other species. -- Research highlights: → A two-hybrid assay was developed to study interactions in macromolecular complexes. → The assay was applied to interactions between components of mRNA P-bodies. → The assay effectively and efficiently identified protein interaction domains. → P-body assembly in mammalian cells differs from that in other species.

Cluster emission at pre-equilibrium stage in Heavy Nuclear Reactions. A Model considering the Thermodynamics of Small Systems

International Nuclear Information System (INIS)

Bermudez Martinez, A.; Damiani, D.; Guzman Martinez, F.; Rodriguez Hoyos, O.; Rodriguez Manso, A.

2015-01-01

Cluster emission at pre-equilibrium stage, in heavy ion fusion reactions of 12 C and 16 O nuclei with 116 Sn, 208 Pb, 238 U are studied. the energy of the projectile nuclei was chosen at 0.25GeV, 0.5GeV and 1GeV. A cluster formation model is developed in order to calculate the cluster size. Thermodynamics of small systems was used in order to examine the cluster behavior inside the nuclear media. This model is based on considering two phases inside the compound nucleus, on one hand the nuclear media phase, and on the other hand the cluster itself. The cluster acts like an instability inside the compound nucleus, provoking an exchange of nucleons with the nuclear media through its surface. The processes were simulated using Monte Carlo methods. We obtained that the cluster emission probability shows great dependence on the cluster size. This project is aimed to implement cluster emission processes, during the pre-equilibrium stage, in the frame of CRISP code (Collaboration Rio-Sao Paulo). (Author)

mRNA export in the apicomplexan parasite Toxoplasma gondii: emerging divergent components of a crucial pathway.

Science.gov (United States)

Ávila, Andréa Rodrigues; Cabezas-Cruz, Alexjandro; Gissot, Mathieu

2018-01-25

Control of gene expression is crucial for parasite survival and is the result of a series of processes that are regulated to permit fine-tuning of gene expression in response to biological changes during the life-cycle of apicomplexan parasites. Control of mRNA nuclear export is a key process in eukaryotic cells but is poorly understood in apicomplexan parasites. Here, we review recent knowledge regarding this process with an emphasis on T. gondii. We describe the presence of divergent orthologs and discuss structural and functional differences in export factors between apicomplexans and other eukaryotic lineages. Undoubtedly, the use of the CRISPR/Cas9 system in high throughput screenings associated with the discovery of mRNA nuclear export complexes by proteomic analysis will contribute to identify these divergent factors. Ligand-based or structure-based strategies may be applied to investigate the potential use of these proteins as targets for new antiprotozoal agents.

Nuclear process heat

Energy Technology Data Exchange (ETDEWEB)

Schulten, R [Kernforschungsanlage Juelich G.m.b.H. (F.R. Germany). Inst. fuer Reaktorentwicklung

1976-05-01

It is anticipated that the coupled utilization of coal and nuclear energy will achieve great importance in the future, the coal serving mainly as raw material and nuclear energy more as primary energy. Prerequisite for this development is the availability of high-temperature reactors, the state of development of which is described here. Raw materials for coupled use with nuclear process heat are petroleum, natural gas, coal, lignite, and water. Steam reformers heated by nuclear process heat, which are suitable for numerous processes, are expected to find wide application. The article describes several individual methods, all based on the transport of gas in pipelines, which could be utilized for the long distance transport of 'nuclear energy'.

Pre-processing of input files for the AZTRAN code; Pre procesamiento de archivos de entrada para el codigo AZTRAN

Energy Technology Data Exchange (ETDEWEB)

Vargas E, S. [ININ, Carretera Mexico-Toluca s/n, 52750 Ocoyoacac, Estado de Mexico (Mexico); Ibarra, G., E-mail: samuel.vargas@inin.gob.mx [IPN, Av. Instituto Politecnico Nacional s/n, 07738 Ciudad de Mexico (Mexico)

2017-09-15

The AZTRAN code began to be developed in the Nuclear Engineering Department of the Escuela Superior de Fisica y Matematicas (ESFM) of the Instituto Politecnico Nacional (IPN) with the purpose of numerically solving various models arising from the physics and engineering of nuclear reactors. The code is still under development and is part of the AZTLAN platform: Development of a Mexican platform for the analysis and design of nuclear reactors. Due to the complexity to generate an input file for the code, a script based on D language is developed, with the purpose of making its elaboration easier, based on a new input file format which includes specific cards, which have been divided into two blocks, mandatory cards and optional cards, including a pre-processing of the input file to identify possible errors within it, as well as an image generator for the specific problem based on the python interpreter. (Author)

Practical Secure Computation with Pre-Processing

DEFF Research Database (Denmark)

Zakarias, Rasmus Winther

Secure Multiparty Computation has been divided between protocols best suited for binary circuits and protocols best suited for arithmetic circuits. With their MiniMac protocol in [DZ13], Damgård and Zakarias take an important step towards bridging these worlds with an arithmetic protocol tuned...... space for pre-processing material than computing the non-linear parts online (depends on the quality of circuit of course). Surprisingly, even for our optimized AES-circuit this is not the case. We further improve the design of the pre-processing material and end up with only 10 megabyes of pre...... a protocol for small field arithmetic to do fast large integer multipli- cations. This is achieved by devising pre-processing material that allows the Toom-Cook multiplication algorithm to run between the parties with linear communication complexity. With this result computation on the CPU by the parties...

Inactivation of a single copy of Crebbp selectively alters pre-mRNA processing in mouse hematopoietic stem cells.

Directory of Open Access Journals (Sweden)

Madeleine E Lemieux

Full Text Available Global expression analysis of fetal liver hematopoietic stem cells (FL HSCs revealed the presence of unspliced pre-mRNA for a number of genes in normal FL HSCs. In a subset of these genes, Crebbp+/- FL HSCs had less unprocessed pre-mRNA without a corresponding reduction in total mRNA levels. Among the genes thus identified were the key regulators of HSC function Itga4, Msi2 and Tcf4. A similar but much weaker effect was apparent in Ep300+/- FL HSCs, indicating that, in this context as in others, the two paralogs are not interchangeable. As a group, the down-regulated intronic probe sets could discriminate adult HSCs from more mature cell types, suggesting that the underlying mechanism is regulated with differentiation stage and is active in both fetal and adult hematopoiesis. Consistent with increased myelopoiesis in Crebbp hemizygous mice, targeted reduction of CREBBP abundance by shRNA in the multipotent EML cell line triggered spontaneous myeloid differentiation in the absence of the normally required inductive signals. In addition, differences in protein levels between phenotypically distinct EML subpopulations were better predicted by taking into account not only the total mRNA signal but also the amount of unspliced message present. CREBBP thus appears to selectively influence the timing and degree of pre-mRNA processing of genes essential for HSC regulation and thereby has the potential to alter subsequent cell fate decisions in HSCs.

Pre-license team training at San Onofre Nuclear Generating Station

International Nuclear Information System (INIS)

Freers, S.M.; Hyman, M.

1987-01-01

Team Training at San Onofre Nuclear Generating Station (SONGS) Units 2 and 3 has been developed to enhance the performance of station operations personnel. The FACT Training Program (Formality, Attention to Detail, Consistency and Team Effort) is the common denominator for operations team training. Compliance with good operating practices is enhanced by operators working as a team toward the same goal, using the same language, practicing the same operating and communication skills, possessing a clear understanding of individual roles and responsibilities of team members and practicing attention to detail in every task. These elements of effective teamwork are emphasized by the processes and criteria used in the Pre-License Operator Training Program at SONGS

Proteomic analysis of ACTN4-interacting proteins reveals it's a putative involvement in mRNA metabolism

International Nuclear Information System (INIS)

Khotin, Mikhail; Turoverova, Lidia; Aksenova, Vasilisa; Barlev, Nikolai; Borutinskaite, Veronika Viktorija; Vener, Alexander; Bajenova, Olga; Magnusson, Karl-Eric; Pinaev, George P.; Tentler, Dmitri

2010-01-01

Alpha-actinin 4 (ACTN4) is an actin-binding protein. In the cytoplasm, ACTN4 participates in structural organisation of the cytoskeleton via cross-linking of actin filaments. Nuclear localisation of ACTN4 has also been reported, but no clear role in the nucleus has been established. In this report, we describe the identification of proteins associated with ACTN4 in the nucleus. A combination of two-dimensional gel electrophoresis (2D-GE) and MALDI-TOF mass-spectrometry revealed a large number of ACTN4-bound proteins that are involved in various aspects of mRNA processing and transport. The association of ACTN4 with different ribonucleoproteins suggests that a major function of nuclear ACTN4 may be regulation of mRNA metabolism and signaling.

mRNA Cancer Vaccines-Messages that Prevail.

Science.gov (United States)

Grunwitz, Christian; Kranz, Lena M

2017-01-01

During the last decade, mRNA became increasingly recognized as a versatile tool for the development of new innovative therapeutics. Especially for vaccine development, mRNA is of outstanding interest and numerous clinical trials have been initiated. Strikingly, all of these studies have proven that large-scale GMP production of mRNA is feasible and concordantly report a favorable safety profile of mRNA vaccines. Induction of T-cell immunity is a multi-faceted process comprising antigen acquisition, antigen processing and presentation, as well as immune stimulation. The effectiveness of mRNA vaccines is critically dependent on making the antigen(s) of interest available to professional antigen-presenting cells, especially DCs. Efficient delivery of mRNA into DCs in vivo remains a major challenge in the mRNA vaccine field. This review summarizes the principles of mRNA vaccines and highlights the importance of in vivo mRNA delivery and recent advances in harnessing their therapeutic potential.

Improved Simulation of the Pre-equilibrium Triton Emission in Nuclear Reactions Induced by Nucleons

Science.gov (United States)

Konobeyev, A. Yu.; Fischer, U.; Pereslavtsev, P. E.; Blann, M.

2014-04-01

A new approach is proposed for the calculation of non-equilibrium triton energy distributions in nuclear reactions induced by nucleons of intermediate energies. It combines models describing the nucleon pick-up, the coalescence and the triton knock-out processes. Emission and absorption rates for excited particles are represented by the pre-equilibrium hybrid model. The model of Sato, Iwamoto, Harada is used to describe the nucleon pick-up and the coalescence of nucleons from exciton configurations starting from (2p,1h) states. The contribution of the direct nucleon pick-up is described phenomenologically. Multiple pre-equilibrium emission of tritons is accounted for. The calculated triton energy distributions are compared with available experimental data.

Reprogramming the Dynamin 2 mRNA by Spliceosome-mediated RNA Trans-splicing

Directory of Open Access Journals (Sweden)

Delphine Trochet

2016-01-01

Full Text Available Dynamin 2 (DNM2 is a large GTPase, ubiquitously expressed, involved in membrane trafficking and regulation of actin and microtubule cytoskeletons. DNM2 mutations cause autosomal dominant centronuclear myopathy which is a rare congenital myopathy characterized by skeletal muscle weakness and histopathological features including nuclear centralization in absence of regeneration. No curative treatment is currently available for the DNM2-related autosomal dominant centronuclear myopathy. In order to develop therapeutic strategy, we evaluated here the potential of Spliceosome-Mediated RNA Trans-splicing technology to reprogram the Dnm2-mRNA in vitro and in vivo in mice. We show that classical 3′-trans-splicing strategy cannot be considered as accurate therapeutic strategy regarding toxicity of the pre-trans-splicing molecules leading to low rate of trans-splicing in vivo. Thus, we tested alternative strategies devoted to prevent this toxicity and enhance frequency of trans-splicing events. We succeeded to overcome the toxicity through a 5′-trans-splicing strategy which also allows detection of trans-splicing events at mRNA and protein levels in vitro and in vivo. These results suggest that the Spliceosome-Mediated RNA Trans-splicing strategy may be used to reprogram mutated Dnm2-mRNA but highlight the potential toxicity linked to the molecular tools which have to be carefully investigated during preclinical development.

High-Risk Human Papillomavirus (hrHPV) E6/E7 mRNA Testing by PreTect HPV-Proofer for Detection of Cervical High-Grade Intraepithelial Neoplasia and Cancer among hrHPV DNA-Positive Women with Normal Cytology

Science.gov (United States)

Rijkaart, D. C.; Heideman, D. A. M.; Coupe, V. M. H.; Brink, A. A. T. P.; Verheijen, R. H. M.; Skomedal, H.; Karlsen, F.; Morland, E.; Snijders, P. J. F.

2012-01-01

Our aim was to investigate whether high-risk HPV (hrHPV) mRNA detection by PreTect HPV-Proofer can be used to stratify hrHPV DNA-positive women of different cytology classes for risk of high-grade cervical intraepithelial neoplasia or worse (cervical precancer or cancer, i.e., cervical intraepithelial neoplasia grade 2 or higher [≥CIN2]). A total of 375 women participating in population-based screening, with a GP5+/6+-PCR hrHPV DNA-positive cervical scrape with normal cytology (n = 202), borderline or mild dyskaryosis (BMD) (n = 88), or moderate dyskaryosis or worse (>BMD) (n = 85), were enrolled. Cervical scrapes were additionally subjected to HPV16/18/31/33/45 E6/E7 mRNA analysis by PreTect HPV-Proofer (mRNA test). Referral and follow-up policies were based on cytology, hrHPV DNA, and mRNA testing. The primary study endpoint was the number of ≥CIN2 detected within 3 years of follow-up. The mRNA positivity increased with the severity of cytological abnormality, ranging from 32% (64/202) in hrHPV DNA-positive women with normal cytology to 47% (41/88) in BMD and 68% (58/85) in >BMD groups (P cytology, i.e., 0.55 (95% confidence interval [95% CI], 0.34 to 0.76) in mRNA-positive versus 0.20 (95% CI, 0.07 to 0.33) in mRNA-negative women. In hrHPV DNA-positive women with BMD or >BMD, the result of the mRNA test did not influence the ≥CIN2 risk. In conclusion, mRNA testing by PreTect HPV-Proofer might be of value to select hrHPV DNA-positive women with normal cytology in need of immediate referral for colposcopy. PMID:22553244

Genome-wide mRNA processing in methanogenic archaea reveals post-transcriptional regulation of ribosomal protein synthesis.

Science.gov (United States)

Qi, Lei; Yue, Lei; Feng, Deqin; Qi, Fengxia; Li, Jie; Dong, Xiuzhu

2017-07-07

Unlike stable RNAs that require processing for maturation, prokaryotic cellular mRNAs generally follow an 'all-or-none' pattern. Herein, we used a 5΄ monophosphate transcript sequencing (5΄P-seq) that specifically captured the 5΄-end of processed transcripts and mapped the genome-wide RNA processing sites (PSSs) in a methanogenic archaeon. Following statistical analysis and stringent filtration, we identified 1429 PSSs, among which 23.5% and 5.4% were located in 5΄ untranslated region (uPSS) and intergenic region (iPSS), respectively. A predominant uridine downstream PSSs served as a processing signature. Remarkably, 5΄P-seq detected overrepresented uPSS and iPSS in the polycistronic operons encoding ribosomal proteins, and the majority upstream and proximal ribosome binding sites, suggesting a regulatory role of processing on translation initiation. The processed transcripts showed increased stability and translation efficiency. Particularly, processing within the tricistronic transcript of rplA-rplJ-rplL enhanced the translation of rplL, which can provide a driving force for the 1:4 stoichiometry of L10 to L12 in the ribosome. Growth-associated mRNA processing intensities were also correlated with the cellular ribosomal protein levels, thereby suggesting that mRNA processing is involved in tuning growth-dependent ribosome synthesis. In conclusion, our findings suggest that mRNA processing-mediated post-transcriptional regulation is a potential mechanism of ribosomal protein synthesis and stoichiometry. © The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research.

Genome-wide analysis of alternative splicing of pre-mRNA under salt stress in Arabidopsis

KAUST Repository

Ding, Feng; Cui, Peng; Wang, Zhenyu; Zhang, ShouDong; Ali, Shahjahan; Xiong, Liming

2014-01-01

Background: Alternative splicing (AS) of precursor mRNA (pre-mRNA) is an important gene regulation process that potentially regulates many physiological processes in plants, including the response to abiotic stresses such as salt stress

Human apolipoprotein B (apoB) mRNA: Identification of two distinct apoB mRNAs, an mRNA with the apoB-100 sequence and an apoB mRNA containing a premature in-frame translational stop codon, in both liver and intestine

International Nuclear Information System (INIS)

Higuchi, K.; Hospattankar, A.V.; Law, S.W.; Meglin, N.; Cortright, J.; Brewer, H.B. Jr.

1988-01-01

Human apolipoprotein B (apoB) is present in plasma as two separate isoproteins, designated apoB-100 (512 kDa) and apoB-48 (250 kDa). ApoB is encoded by a single gene on chromosome 2, and a single nuclear mRNA is edited and processed into two separate apoB mRNAs. A 14.1-kilobase apoB mRNA codes for apoB-100, and the second mRNA, which codes for apoB-48, contains a premature stop codon generated by a single base substitution of cytosine to uracil at nucleotide 6,538, which converts the translated CAA codon coding for the amino acid glutamine at residue 2,153 in apoB-100 to a premature in-frame stop codon (UAA). Two 30-base synthetic oligonucleotides, designated apoB-Stop and apoB-Gln, were synthesized containing the complementary sequence to the stop codon (UAA) and glutamine codon (CAA), respectively. The combined results from these studies establish that both human intestine and liver contain the two distinct apoB mRNAs, an mRNA that codes for apoB-100 and an apoB mRNA that contains the premature stop codon, which codes for apoB-48. The premature in-frame stop codon is not tissue specific and is present in both human liver and intestine

Attenuation in the rph-pyrE operon of Escherichia coli and processing of the dicistronic mRNA

DEFF Research Database (Denmark)

Poulsen, Peter; Jensen, Kaj Frank

1992-01-01

We have substituted on a plasmid the native promoter of the Escherichia coli rph-pyrE operon with an inducible transcription-initiation signal. The plasmid was used to study the mRNA chains derived from the operon at different intracellular concentrations of UTP and as a function of time following...... induction of transcription. The results showed that dicistronic rph-pyrE mRNA was formed when the UTP pool was low, and that a monocistronic rph mRNA was the major transcription product in high-UTP pools, thus supporting an UTP-controlled attenuation mechanism for regulation of pyrE gene expression. However......, the dicistronic rph-pyrE transcript was rapidly processed into two monocistronic mRNA units, and a cleavage site was mapped near the attenuator in the intercistronic region, close to the site where transcription was terminated in high-UTP pools. Furthermore, the major 3' end of the pyrE mRNA was mapped near...

A novel link between Sus1 and the cytoplasmic mRNA decay machinery suggests a broad role in mRNA metabolism

Directory of Open Access Journals (Sweden)

Llopis Ana

2010-03-01

Full Text Available Abstract Background Gene expression is achieved by the coordinated action of multiple factors to ensure a perfect synchrony from chromatin epigenetic regulation through to mRNA export. Sus1 is a conserved mRNA export/transcription factor and is a key player in coupling transcription initiation, elongation and mRNA export. In the nucleus, Sus1 is associated to the transcriptional co-activator SAGA and to the NPC associated complex termed TREX2/THSC. Through these associations, Sus1 mediates the nuclear dynamics of different gene loci and facilitate the export of the new transcripts. Results In this study, we have investigated whether the yeast Sus1 protein is linked to factors involved in mRNA degradation pathways. We provide evidence for genetic interactions between SUS1 and genes coding for components of P-bodies such as PAT1, LSM1, LSM6 and DHH1. We demonstrate that SUS1 deletion is synthetic lethal with 5'→3' decay machinery components LSM1 and PAT1 and has a strong genetic interaction with LSM6 and DHH1. Interestingly, Sus1 overexpression led to an accumulation of Sus1 in cytoplasmic granules, which can co-localise with components of P-bodies and stress granules. In addition, we have identified novel physical interactions between Sus1 and factors associated to P-bodies/stress granules. Finally, absence of LSM1 and PAT1 slightly promotes the Sus1-TREX2 association. Conclusions In this study, we found genetic and biochemical association between Sus1 and components responsible for cytoplasmic mRNA metabolism. Moreover, Sus1 accumulates in discrete cytoplasmic granules, which partially co-localise with P-bodies and stress granules under specific conditions. These interactions suggest a role for Sus1 in gene expression during cytoplasmic mRNA metabolism in addition to its nuclear function.

Space Nuclear Power Plant Pre-Conceptual Design Report, For Information

Energy Technology Data Exchange (ETDEWEB)

B. Levine

2006-01-27

This letter transmits, for information, the Project Prometheus Space Nuclear Power Plant (SNPP) Pre-Conceptual Design Report completed by the Naval Reactors Prime Contractor Team (NRPCT). This report documents the work pertaining to the Reactor Module, which includes integration of the space nuclear reactor with the reactor radiation shield, energy conversion, and instrumentation and control segments. This document also describes integration of the Reactor Module with the Heat Rejection segment, the Power Conditioning and Distribution subsystem (which comprise the SNPP), and the remainder of the Prometheus spaceship.

An overview of the status of nuclear science education in pre-college programs

International Nuclear Information System (INIS)

Ling, A.C.; Atwood, C.H.

1993-01-01

This communication will provide an overview of the papers given in the Symposium entitled 'Pre-College Education in Nuclear Science' held under the auspices of the Division of Nuclear Chemistry and Technology of the American Chemical Society, and given at the 204th National Meeting of the American Chemical Society in Washington, D.C., on August 24-28, 1992. The Symposium consisted of 45 invited papers, and covered topics in nuclear science education at the high school, middle school, and elementary school levels. The Symposium also presented an overview of the involvement of university and federal laboratories in providing teaching and research opportunities for pre-college faculty and students, curriculum enhancement by special interest groups such as power and utility companies, as well as funding opportunities from private and federal agencies. (author)

An Interaction between KSHV ORF57 and UIF Provides mRNA-Adaptor Redundancy in Herpesvirus Intronless mRNA Export

Science.gov (United States)

Jackson, Brian R.; Boyne, James R.; Noerenberg, Marko; Taylor, Adam; Hautbergue, Guillaume M.; Walsh, Matthew J.; Wheat, Rachel; Blackbourn, David J.; Wilson, Stuart A.; Whitehouse, Adrian

2011-01-01

The hTREX complex mediates cellular bulk mRNA nuclear export by recruiting the nuclear export factor, TAP, via a direct interaction with the export adaptor, Aly. Intriguingly however, depletion of Aly only leads to a modest reduction in cellular mRNA nuclear export, suggesting the existence of additional mRNA nuclear export adaptor proteins. In order to efficiently export Kaposi's sarcoma-associated herpesvirus (KSHV) intronless mRNAs from the nucleus, the KSHV ORF57 protein recruits hTREX onto viral intronless mRNAs allowing access to the TAP-mediated export pathway. Similarly however, depletion of Aly only leads to a modest reduction in the nuclear export of KSHV intronless mRNAs. Herein, we identify a novel interaction between ORF57 and the cellular protein, UIF. We provide the first evidence that the ORF57-UIF interaction enables the recruitment of hTREX and TAP to KSHV intronless mRNAs in Aly-depleted cells. Strikingly, depletion of both Aly and UIF inhibits the formation of an ORF57-mediated nuclear export competent ribonucleoprotein particle and consequently prevents ORF57-mediated mRNA nuclear export and KSHV protein production. Importantly, these findings highlight that redundancy exists in the eukaryotic system for certain hTREX components involved in the mRNA nuclear export of intronless KSHV mRNAs. PMID:21814512

Single-cell analysis reveals early manifestation of cancerous phenotype in pre-malignant esophageal cells.

Directory of Open Access Journals (Sweden)

Jiangxin Wang

Full Text Available Cellular heterogeneity plays a pivotal role in a variety of functional processes in vivo including carcinogenesis. However, our knowledge about cell-to-cell diversity and how differences in individual cells manifest in alterations at the population level remains very limited mainly due to the lack of appropriate tools enabling studies at the single-cell level. We present a study on changes in cellular heterogeneity in the context of pre-malignant progression in response to hypoxic stress. Utilizing pre-malignant progression of Barrett's esophagus (BE as a disease model system we studied molecular mechanisms underlying the progression from metaplastic to dysplastic (pre-cancerous stage. We used newly developed methods enabling measurements of cell-to-cell differences in copy numbers of mitochondrial DNA, expression levels of a set of mitochondrial and nuclear genes involved in hypoxia response pathways, and mitochondrial membrane potential. In contrast to bulk cell studies reported earlier, our study shows significant differences between metaplastic and dysplastic BE cells in both average values and single-cell parameter distributions of mtDNA copy numbers, mitochondrial function, and mRNA expression levels of studied genes. Based on single-cell data analysis, we propose that mitochondria may be one of the key factors in pre-malignant progression in BE.

Interactions between the HIV-1 Unspliced mRNA and Host mRNA Decay Machineries

Directory of Open Access Journals (Sweden)

Daniela Toro-Ascuy

2016-11-01

Full Text Available The human immunodeficiency virus type-1 (HIV-1 unspliced transcript is used both as mRNA for the synthesis of structural proteins and as the packaged genome. Given the presence of retained introns and instability AU-rich sequences, this viral transcript is normally retained and degraded in the nucleus of host cells unless the viral protein REV is present. As such, the stability of the HIV-1 unspliced mRNA must be particularly controlled in the nucleus and the cytoplasm in order to ensure proper levels of this viral mRNA for translation and viral particle formation. During its journey, the HIV-1 unspliced mRNA assembles into highly specific messenger ribonucleoproteins (mRNPs containing many different host proteins, amongst which are well-known regulators of cytoplasmic mRNA decay pathways such as up-frameshift suppressor 1 homolog (UPF1, Staufen double-stranded RNA binding protein 1/2 (STAU1/2, or components of miRNA-induced silencing complex (miRISC and processing bodies (PBs. More recently, the HIV-1 unspliced mRNA was shown to contain N6-methyladenosine (m6A, allowing the recruitment of YTH N6-methyladenosine RNA binding protein 2 (YTHDF2, an m6A reader host protein involved in mRNA decay. Interestingly, these host proteins involved in mRNA decay were shown to play positive roles in viral gene expression and viral particle assembly, suggesting that HIV-1 interacts with mRNA decay components to successfully accomplish viral replication. This review summarizes the state of the art in terms of the interactions between HIV-1 unspliced mRNA and components of different host mRNA decay machineries.

Matrin 3 binds and stabilizes mRNA.

Directory of Open Access Journals (Sweden)

Maayan Salton

Full Text Available Matrin 3 (MATR3 is a highly conserved, inner nuclear matrix protein with two zinc finger domains and two RNA recognition motifs (RRM, whose function is largely unknown. Recently we found MATR3 to be phosphorylated by the protein kinase ATM, which activates the cellular response to double strand breaks in the DNA. Here, we show that MATR3 interacts in an RNA-dependent manner with several proteins with established roles in RNA processing, and maintains its interaction with RNA via its RRM2 domain. Deep sequencing of the bound RNA (RIP-seq identified several small noncoding RNA species. Using microarray analysis to explore MATR3's role in transcription, we identified 77 transcripts whose amounts depended on the presence of MATR3. We validated this finding with nine transcripts which were also bound to the MATR3 complex. Finally, we demonstrated the importance of MATR3 for maintaining the stability of several of these mRNA species and conclude that it has a role in mRNA stabilization. The data suggest that the cellular level of MATR3, known to be highly regulated, modulates the stability of a group of gene transcripts.

Comparison of HPV detection technologies: Hybrid capture 2, PreTect HPV-Proofer and analysis of HPV DNA viral load in HPV16, HPV18 and HPV33 E6/E7 mRNA positive specimens.

LENUS (Irish Health Repository)

Keegan, Helen

2012-02-01

Human papillomavirus (HPV) testing using molecular methods in liquid based cytology (LBC) specimens may be useful as an adjunct to cervical screening by cytology. We compared the positivity rate of the commercially available HPV DNA method hybrid capture 2 (hc2) and the commercially available E6\\/E7 mRNA method PreTect HPV-Proofer in cytological specimens (n=299). LBC specimens collected (n=299) represented the following cervical cytological disease categories: Normal (n=60), borderline nuclear abnormalities (BNA) (n=34), CIN1 (n=121), CIN2 (n=60), CIN3 (n=24). Overall, 69% (205\\/299) of the cases were positive by hc2 and 38% (112\\/299) of the cases were positive by PreTect HPV-Proofer. Concordance rates between the two tests were highest in the high-grade cytology cases (CIN2: 67% and CIN3: 83%) and the normal cytology cases (88%) and lowest in the BNA and CIN1 categories (56% and 52%). HPV DNA viral load analyses were carried out on HPV16 (n=55), HPV18 (n=9) and HPV33 (n=13) samples that were positive by PreTect HPV-Proofer. The sensitivity and specificity of PreTect HPV-Proofer and the hc2 DNA test for the detection of high-grade cytology (i.e. CIN2+) were 71.4% and 75.8% vs 100% and 43.7%, respectively. The relatively low detection rate observed by PreTect HPV-Proofer in the whole range of cytological positive cases, combined with a relatively higher specificity and PPV, suggests that PreTect HPV-Proofer may be more useful than hc2 for triage and in predicting high-grade disease.

Astaxanthin inhibits cytokines production and inflammatory gene expression by suppressing IκB kinase-dependent nuclear factor κB activation in pre and postpartum Murrah buffaloes during different seasons

Directory of Open Access Journals (Sweden)

Lakshmi Priyadarshini

2018-06-01

Full Text Available Aim: We examined regulatory function of astaxanthin on mRNA expression of nuclear factor κB (NF-κB p65, interleukin-6 (IL-6, tumor necrosis factor alpha (TNF-α, and interferon gamma (IFN-γ in peripheral blood mononuclear cells in pre and postpartum Murrah buffaloes during summer (temperature-humidity index [THI]=86; relative humidity [RH]=24 and winter (THI=58.74; RH=73 seasons. Materials and Methods: A total of 32 Murrah buffaloes apparently healthy and in their one to four parity were selected from National Dairy Research Institute herd and equally distributed randomly into four groups (control and supplemented groups of buffaloes during summer and winter season, respectively. All groups were fed according to the nutrient requirement of buffaloes (ICAR, 2013. The treatment group was supplemented with astaxanthin at 0.25 mg/kg body weight/animal/day during the period 30 days before expected date of calving and up to 30 days postpartum. Results: There was downregulation of NF-κB p65 gene in all the groups. NF-κB p65 mRNA expression was lower (p<0.05 in treatment than control group from prepartum to postpartum during summer, while mRNA expression was low only on day 21 after calving during winter season. The mRNA expression of IL-6, TNF-α, and IFN-γ was lower (p<0.05 in treatment than a control group of buffaloes during summer and winter seasons. The mRNA expression of NF-κB p65, IL-6, TNF-α, and IFN-γ was higher (p<0.05 in summer than in winter seasons. Conclusion: The xanthophyll carotenoid astaxanthin a reddish-colored C-40 compound is a powerful broad-ranging antioxidant that naturally occurs in a wide variety of living organisms, such as microalgae, fungi, crustaceans, and complex plants. Astaxanthin blocked nuclear translocation of NF-κB p65 subunit and IκBa degradation, which correlated with its inhibitory effect on IκB kinase (IKK activity. These results suggest that astaxanthin, probably due to its antioxidant activity

The RDE-10/RDE-11 complex triggers RNAi-induced mRNA degradation by association with target mRNA in C. elegans.

Science.gov (United States)

Yang, Huan; Zhang, Ying; Vallandingham, Jim; Li, Hua; Li, Hau; Florens, Laurence; Mak, Ho Yi

2012-04-15

The molecular mechanisms for target mRNA degradation in Caenorhabditis elegans undergoing RNAi are not fully understood. Using a combination of genetic, proteomic, and biochemical approaches, we report a divergent RDE-10/RDE-11 complex that is required for RNAi in C. elegans. Genetic analysis indicates that the RDE-10/RDE-11 complex acts in parallel to nuclear RNAi. Association of the complex with target mRNA is dependent on RDE-1 but not RRF-1, suggesting that target mRNA recognition depends on primary but not secondary siRNA. Furthermore, RDE-11 is required for mRNA degradation subsequent to target engagement. Deep sequencing reveals a fivefold decrease in secondary siRNA abundance in rde-10 and rde-11 mutant animals, while primary siRNA and microRNA biogenesis is normal. Therefore, the RDE-10/RDE-11 complex is critical for amplifying the exogenous RNAi response. Our work uncovers an essential output of the RNAi pathway in C. elegans.

Intergenic mRNA molecules resulting from trans-splicing.

Science.gov (United States)

Finta, Csaba; Zaphiropoulos, Peter G

2002-02-22

Accumulated recent evidence is indicating that alternative splicing represents a generalized process that increases the complexity of human gene expression. Here we show that mRNA production may not necessarily be limited to single genes, as human liver also has the potential to produce a variety of hybrid cytochrome P450 3A mRNA molecules. The four known cytochrome P450 3A genes in humans, CYP3A4, CYP3A5, CYP3A7, and CYP3A43, share a high degree of similarity, consist of 13 exons with conserved exon-intron boundaries, and form a cluster on chromosome 7. The chimeric CYP3A mRNA molecules described herein are characterized by CYP3A43 exon 1 joined at canonical splice sites to distinct sets of CYP3A4 or CYP3A5 exons. Because the CYP3A43 gene is in a head-to-head orientation with the CYP3A4 and CYP3A5 genes, bypassing transcriptional termination can not account for the formation of hybrid CYP3A mRNAs. Thus, the mechanism generating these molecules has to be an RNA processing event that joins exons of independent pre-mRNA molecules, i.e. trans-splicing. Using quantitative real-time polymerase chain reaction, the ratio of one CYP3A43/3A4 intergenic combination was estimated to be approximately 0.15% that of the CYP3A43 mRNAs. Moreover, trans-splicing has been found not to interfere with polyadenylation. Heterologous expression of the chimeric species composed of CYP3A43 exon 1 joined to exons 2-13 of CYP3A4 revealed catalytic activity toward testosterone.

Nuclear surveillance of mRNP formation

DEFF Research Database (Denmark)

Jensen, Torben Heick

Proper formation of mRNP requires co-transcriptional loading of proteins onto nascent transcripts. Mutations in several genes involved in mRNA processing, mRNP assembly and nuclear export lead to production of aberrant mRNPs that are retained in transcription site-associated foci. Retention...... and degradation of transcripts depend on the nuclear exosome of 3’-5’ exonucleases.We have studied connections between mRNP assembly and quality control in the yeast S. cerevisiae using mutants of the THO complex. THO is implicated in co-transcriptional mRNP assembly, but its precise role is not known. Genetic...... and biochemical data now show that a defective THO complex negatively impacts mRNA 3’-end processing. We are currently trying to understand the relationship between this phenomenon and mRNP quality control. Retention of mRNP in THO mutants is dependent on the nuclear exosome component Rrp6p. Using the solved...

HLA-G allelic variants are associated with differences in the HLA-G mRNA isoform profile and HLA-G mRNA levels

DEFF Research Database (Denmark)

Hviid, Thomas Vauvert F; Hylenius, Sine; Rørbye, Christina

2003-01-01

between mother and fetus in several ways. Finally, the expression of membrane-bound HLA-G and soluble HLA-G has been proposed to influence the outcome of pregnancy, and an aberrant HLA-G expression in pre-eclamptic placentas and spontaneous abortions has been reported. Here, an association between certain...... HLA-G polymorphisms and the mRNA levels of the different alternatively spliced HLA-G isoforms in first trimester trophoblast cell populations is reported. Several alternatively spliced HLA-G mRNA isoforms, including a 14-bp polymorphism in the 3'UTR end (exon 8) of the HLA-G gene, are expressed...

Alterations in messenger RNA and small nuclear RNA metabolism resulting from fluorouracil incorporation

International Nuclear Information System (INIS)

Armstrong, R.D.; Cadman, E.C.

1985-01-01

Studies were completed to examine the effect of 5-fluorouracil (FUra) incorporation on messenger RNA (mRNA) and small molecular weight nuclear RNA (SnRNA) metabolism. Studies of mRNA were completed using cDNA-mRNA hybridization methods to specifically examine dihydrofolate reductase (DHFR) mRNA. C 3 -L5178Y murine leukemia cells which are gene-amplified for DHFR, were exposed to FUra for 6, 12 or 24 hr, and the nuclear and cytoplasmic levels of DHFR-mRNA determined by hybridization with 32 P-DHFR-cDNA. FUra produced a dose-dependent increase in nuclear DHFR-mRNA levels, while total cytoplasmic DHFR-mRNA levels appeared to be unchanged. To examine only mRNA synthesized during FUra exposure, cells were also treated concurrently with [ 3 H] cytidine, and the [ 3 H]mRNA-cDNA hybrids measured following S 1 -nuclease treatment. FUra produced a concentration-dependent increase in nascent nuclear DHFR-mRNA levels, and a decrease in nascent cytoplasmic DHFR-mRNAs levels. These results suggest that FUra produces either an inhibition of mRNA processing, or an inhibition of nuclear-cytoplasmic transport. Preliminary experiments to examine ATP-dependent mRNA transport were completed with isolated nuclei from cells treated with FUra for 1 or 24 hr and then pulse-labeled for 1 hr with [ 3 H] cytidine. The results demonstrate a FUra-concentration and time-dependent inhibition of ATP-mediated mRNA efflux

The yeast THO/Sub2 complex is functionally linked to 3’-end processing

DEFF Research Database (Denmark)

Jensen, Torben Heick

In S. cerevisiae the RNA polymerase II-associated THO complex facilitates loading of the RNA-dependent ATPase Sub2p/UAP56 onto nascent transcripts. Mutation of individual THO components or Sub2p elicits dual transcription and mRNA nuclear export phenotypes. In addition Sub2p also has been...... close proximity to cleavage/polyadenylation site sequences. Moreover, yeast extracts prepared from THO deletion- or sub2 mutant-strains are deficient for pre-mRNA 3’-end cleavage in an in vitro system uncoupled from transcription. The molecular basis for the link between THO/Sub2 and 3’ end processing...

Sulphur cement pre-composition and process for preparing such sulphur cement pre-composition

NARCIS (Netherlands)

2013-01-01

The invention provides a process for the preparation of a sulphur cement pre-composition comprising reacting sulphur modifier with polysulphide-containing organosilane to obtain in the presence of sulphur the sulphur cement pre-composition, wherein the organosilane has the general molecular formula:

Process industry properties in nuclear industry

International Nuclear Information System (INIS)

Zheng Hualing

2005-01-01

In this article the writer has described the definition of process industry, expounded the fact classifying nuclear industry as process industry, compared the differences between process industry and discrete industry, analysed process industry properties in nuclear industry and their important impact, and proposed enhancing research work on regularity of process industry in nuclear industry. (authors)

Pre-grade academic project: Technicature in nuclear applications

International Nuclear Information System (INIS)

Daoud, Adrian; Garcia Blesa, Hernan M.; Lerner, Ana M.; Notari, Carla

2009-01-01

The increasing use of radiation and radioactive materials in the world today has created a demand of Specialized Nuclear Technicians. Both at the international level and locally in Argentina, such demand is expected to continue being significant for several years, and at present it already exceeds the offer of qualified personnel, which constitutes an interesting stimulus for graduates. For this reason, the Dan Beninson Nuclear Technology Institute has decided to accept the challenge of educating specialized technicians, and has thus designed a new pre-grade career: the Technicature in Nuclear Applications. The basis of this proposal is to design a three year high level specific training program in order to produce highly qualified technicians with a title issued by our Institute, offer the students a unique education with interesting working opportunities and required in all those areas that in one way or other are related to radiation and radioactive materials. No equivalent academic offer is in place today at university level. Due to the renaissance of nuclear activity and the subsequent increasing use of radioisotopes and radiation in technological applications as well as in energy generation, medical applications, agriculture, pharmacology, among others, it has become mandatory to train specialized human resources in this field. Having these goals in mind, our Institute has created this career, with the purpose of satisfying such request which will benefit the whole society. (author)

Superior pre-attentive auditory processing in musicians.

Science.gov (United States)

Koelsch, S; Schröger, E; Tervaniemi, M

1999-04-26

The present study focuses on influences of long-term experience on auditory processing, providing the first evidence for pre-attentively superior auditory processing in musicians. This was revealed by the brain's automatic change-detection response, which is reflected electrically as the mismatch negativity (MMN) and generated by the operation of sensoric (echoic) memory, the earliest cognitive memory system. Major chords and single tones were presented to both professional violinists and non-musicians under ignore and attend conditions. Slightly impure chords, presented among perfect major chords elicited a distinct MMN in professional musicians, but not in non-musicians. This demonstrates that compared to non-musicians, musicians are superior in pre-attentively extracting more information out of musically relevant stimuli. Since effects of long-term experience on pre-attentive auditory processing have so far been reported for language-specific phonemes only, results indicate that sensory memory mechanisms can be modulated by training on a more general level.

Comparison of pre-processing methods for multiplex bead-based immunoassays.

Science.gov (United States)

Rausch, Tanja K; Schillert, Arne; Ziegler, Andreas; Lüking, Angelika; Zucht, Hans-Dieter; Schulz-Knappe, Peter

2016-08-11

High throughput protein expression studies can be performed using bead-based protein immunoassays, such as the Luminex® xMAP® technology. Technical variability is inherent to these experiments and may lead to systematic bias and reduced power. To reduce technical variability, data pre-processing is performed. However, no recommendations exist for the pre-processing of Luminex® xMAP® data. We compared 37 different data pre-processing combinations of transformation and normalization methods in 42 samples on 384 analytes obtained from a multiplex immunoassay based on the Luminex® xMAP® technology. We evaluated the performance of each pre-processing approach with 6 different performance criteria. Three performance criteria were plots. All plots were evaluated by 15 independent and blinded readers. Four different combinations of transformation and normalization methods performed well as pre-processing procedure for this bead-based protein immunoassay. The following combinations of transformation and normalization were suitable for pre-processing Luminex® xMAP® data in this study: weighted Box-Cox followed by quantile or robust spline normalization (rsn), asinh transformation followed by loess normalization and Box-Cox followed by rsn.

Principles of mRNA transport in yeast.

Science.gov (United States)

Heym, Roland Gerhard; Niessing, Dierk

2012-06-01

mRNA localization and localized translation is a common mechanism by which cellular asymmetry is achieved. In higher eukaryotes the mRNA transport machinery is required for such diverse processes as stem cell division and neuronal plasticity. Because mRNA localization in metazoans is highly complex, studies at the molecular level have proven to be cumbersome. However, active mRNA transport has also been reported in fungi including Saccharomyces cerevisiae, Ustilago maydis and Candida albicans, in which these events are less difficult to study. Amongst them, budding yeast S. cerevisiae has yielded mechanistic insights that exceed our understanding of other mRNA localization events to date. In contrast to most reviews, we refrain here from summarizing mRNA localization events from different organisms. Instead we give an in-depth account of ASH1 mRNA localization in budding yeast. This approach is particularly suited to providing a more holistic view of the interconnection between the individual steps of mRNA localization, from transcriptional events to cytoplasmic mRNA transport and localized translation. Because of our advanced mechanistic understanding of mRNA localization in yeast, the present review may also be informative for scientists working, for example, on mRNA localization in embryogenesis or in neurons.

Modeling nuclear processes by Simulink

Energy Technology Data Exchange (ETDEWEB)

Rashid, Nahrul Khair Alang Md, E-mail: nahrul@iium.edu.my [Faculty of Engineering, International Islamic University Malaysia, Jalan Gombak, Selangor (Malaysia)

2015-04-29

Modelling and simulation are essential parts in the study of dynamic systems behaviours. In nuclear engineering, modelling and simulation are important to assess the expected results of an experiment before the actual experiment is conducted or in the design of nuclear facilities. In education, modelling can give insight into the dynamic of systems and processes. Most nuclear processes can be described by ordinary or partial differential equations. Efforts expended to solve the equations using analytical or numerical solutions consume time and distract attention from the objectives of modelling itself. This paper presents the use of Simulink, a MATLAB toolbox software that is widely used in control engineering, as a modelling platform for the study of nuclear processes including nuclear reactor behaviours. Starting from the describing equations, Simulink models for heat transfer, radionuclide decay process, delayed neutrons effect, reactor point kinetic equations with delayed neutron groups, and the effect of temperature feedback are used as examples.

Modeling nuclear processes by Simulink

International Nuclear Information System (INIS)

Rashid, Nahrul Khair Alang Md

2015-01-01

Modelling and simulation are essential parts in the study of dynamic systems behaviours. In nuclear engineering, modelling and simulation are important to assess the expected results of an experiment before the actual experiment is conducted or in the design of nuclear facilities. In education, modelling can give insight into the dynamic of systems and processes. Most nuclear processes can be described by ordinary or partial differential equations. Efforts expended to solve the equations using analytical or numerical solutions consume time and distract attention from the objectives of modelling itself. This paper presents the use of Simulink, a MATLAB toolbox software that is widely used in control engineering, as a modelling platform for the study of nuclear processes including nuclear reactor behaviours. Starting from the describing equations, Simulink models for heat transfer, radionuclide decay process, delayed neutrons effect, reactor point kinetic equations with delayed neutron groups, and the effect of temperature feedback are used as examples

Cdk1 Activates Pre-Mitotic Nuclear Envelope Dynein Recruitment and Apical Nuclear Migration in Neural Stem cells

Science.gov (United States)

Baffet, Alexandre D.; Hu, Daniel J.; Vallee, Richard B.

2015-01-01

Summary Dynein recruitment to the nuclear envelope is required for pre-mitotic nucleus-centrosome interactions in nonneuronal cells, and for apical nuclear migration in neural stem cells. In each case, dynein is recruited to the nuclear envelope (NE) specifically during G2, via two nuclear pore-mediated mechanisms involving RanBP2-BicD2 and Nup133-CENP-F. The mechanisms responsible for cell cycle control of this behavior are unknown. We now find that Cdk1 serves as a direct master controller for NE dynein recruitment in neural stem cells and HeLa cells. Cdk1 phosphorylates conserved sites within RanBP2 and activates BicD2 binding and early dynein recruitment. Late recruitment is triggered by a Cdk1-induced export of CENP-F from the nucleus. Forced NE targeting of BicD2 overrides Cdk1 inhibition, fully rescuing dynein recruitment and nuclear migration in neural stem cells. These results reveal how NE dynein recruitment is cell cycle regulated, and identify the trigger mechanism for apical nuclear migration in the brain. PMID:26051540

Making the decision-making basis for nuclear waste management transparent - A pre-study report

International Nuclear Information System (INIS)

Andersson, Kjell

2007-04-01

The pre-study report proposes that KASAM (Swedish National Council for Nuclear Waste, an independent committee attached to the Swedish Ministry of Environment) uses the RISCOM Model to support the transparency programme. Recurrent elements in the programme would then be: A clear description of background for the issue being addressed; Knowledge building activities; A hearing where the KASAM committee members and staff stretch the stakeholders. The transparency programme can combine the RISCOM Model with other approaches to citizen participation at occasions when this is deemed suitable. For example, focus groups, other forms of working groups and consensus conferences could be organized and linked to a 'RISCOM hearing'. Therefore, the pre-study report contains an overview section about methods for public participation. At this stage of the Swedish programme for nuclear waste management it is believed that KASAM can provide an arena for transparency which other stakeholders can trust not having hidden agendas or vested interested in the results. During the pre-study a number of stakeholders were approached to give their views about the format and contents of the transparency programme. The consultations showed great expectations on the programme and a large number of issues were raised that could be included in transparency creating activities. A typical activity will be relatively resource demanding, especially with respect to the time available for key stakeholders. Therefore, issues to be addressed must be critically prioritised. The pre-study report contains nine issues proposed for special efforts by KASAM: Deep bore holes as a possible alternative method for final disposal; Citizen participation and democracy; The roles of responsible authorities; Decommissioning of nuclear reactors; Site selection - on what basis?; Socioeconomic issues; Local environmental issues and regional environmental goals; Long term storage of spent nuclear fuel; Critical assumptions

Research on pre-processing of QR Code

Science.gov (United States)

Sun, Haixing; Xia, Haojie; Dong, Ning

2013-10-01

QR code encodes many kinds of information because of its advantages: large storage capacity, high reliability, full arrange of utter-high-speed reading, small printing size and high-efficient representation of Chinese characters, etc. In order to obtain the clearer binarization image from complex background, and improve the recognition rate of QR code, this paper researches on pre-processing methods of QR code (Quick Response Code), and shows algorithms and results of image pre-processing for QR code recognition. Improve the conventional method by changing the Souvola's adaptive text recognition method. Additionally, introduce the QR code Extraction which adapts to different image size, flexible image correction approach, and improve the efficiency and accuracy of QR code image processing.

Muscle-specific splicing factors ASD-2 and SUP-12 cooperatively switch alternative pre-mRNA processing patterns of the ADF/cofilin gene in Caenorhabditis elegans.

Directory of Open Access Journals (Sweden)

Genta Ohno

Full Text Available Pre-mRNAs are often processed in complex patterns in tissue-specific manners to produce a variety of protein isoforms from single genes. However, mechanisms orchestrating the processing of the entire transcript are not well understood. Muscle-specific alternative pre-mRNA processing of the unc-60 gene in Caenorhabditis elegans, encoding two tissue-specific isoforms of ADF/cofilin with distinct biochemical properties in regulating actin organization, provides an excellent in vivo model of complex and tissue-specific pre-mRNA processing; it consists of a single first exon and two separate series of downstream exons. Here we visualize the complex muscle-specific processing pattern of the unc-60 pre-mRNA with asymmetric fluorescence reporter minigenes. By disrupting juxtaposed CUAAC repeats and UGUGUG stretch in intron 1A, we demonstrate that these elements are required for retaining intron 1A, as well as for switching the processing patterns of the entire pre-mRNA from non-muscle-type to muscle-type. Mutations in genes encoding muscle-specific RNA-binding proteins ASD-2 and SUP-12 turned the colour of the unc-60 reporter worms. ASD-2 and SUP-12 proteins specifically and cooperatively bind to CUAAC repeats and UGUGUG stretch in intron 1A, respectively, to form a ternary complex in vitro. Immunohistochemical staining and RT-PCR analyses demonstrate that ASD-2 and SUP-12 are also required for switching the processing patterns of the endogenous unc-60 pre-mRNA from UNC-60A to UNC-60B in muscles. Furthermore, systematic analyses of partially spliced RNAs reveal the actual orders of intron removal for distinct mRNA isoforms. Taken together, our results demonstrate that muscle-specific splicing factors ASD-2 and SUP-12 cooperatively promote muscle-specific processing of the unc-60 gene, and provide insight into the mechanisms of complex pre-mRNA processing; combinatorial regulation of a single splice site by two tissue-specific splicing regulators

Nuclear Solid Waste Processing Design at the Idaho Spent Fuels Facility

International Nuclear Information System (INIS)

Dippre, M. A.

2003-01-01

A spent nuclear fuels (SNF) repackaging and storage facility was designed for the Idaho National Engineering and Environmental Laboratory (INEEL), with nuclear solid waste processing capability. Nuclear solid waste included contaminated or potentially contaminated spent fuel containers, associated hardware, machinery parts, light bulbs, tools, PPE, rags, swabs, tarps, weld rod, and HEPA filters. Design of the nuclear solid waste processing facilities included consideration of contractual, regulatory, ALARA (as low as reasonably achievable) exposure, economic, logistical, and space availability requirements. The design also included non-attended transfer methods between the fuel packaging area (FPA) (hot cell) and the waste processing area. A monitoring system was designed for use within the FPA of the facility, to pre-screen the most potentially contaminated fuel canister waste materials, according to contact- or non-contact-handled capability. Fuel canister waste materials which are not able to be contact-handled after attempted decontamination will be processed remotely and packaged within the FPA. Noncontact- handled materials processing includes size-reduction, as required to fit into INEEL permitted containers which will provide sufficient additional shielding to allow contact handling within the waste areas of the facility. The current design, which satisfied all of the requirements, employs mostly simple equipment and requires minimal use of customized components. The waste processing operation also minimizes operator exposure and operator attendance for equipment maintenance. Recently, discussions with the INEEL indicate that large canister waste materials can possibly be shipped to the burial facility without size-reduction. New waste containers would have to be designed to meet the drop tests required for transportation packages. The SNF waste processing facilities could then be highly simplified, resulting in capital equipment cost savings, operational

Clinical significance of LUNX mRNA, CK19 mRNA, CEA mRNA expression in detecting micrometastasis from lung cancer

International Nuclear Information System (INIS)

Zhu Guangying; Liu Delin; Chen Jie

2003-01-01

Objective: To evaluate the sensitivity, specificity and clinical significance of CK19 mRNA, CEA mRNA and LUNX mRNA for detecting micrometastasis by sampling the peripheral blood and regional lymph nodes of lung cancer patients. Methods: Reverse transcriptase chain reaction (RT-PCR) was used to detect LUNX mRNA, CK19 mRNA, CEA mRNA for micrometastasis by sampling the peripheral blood of 48 lung cancer patients and 44 regional lymph nodes of such patients treated by curative resection. Peripheral blood of 30 patients with pulmonary benign lesions and 10 normal healthy volunteers and lymph nodes of 6 patients with benign pulmonary diseases served as control. Results: 1) LUNX mRNA, CK19 mRNA, CEA mRNA were expressed in all (35/35) lung cancer tissues. 2) In the peripheral blood from 48 lung cancer patients, 30 (62.5%) were positive for LUNX mRNA, 24 (50.0%) positive for CK19 mRNA and 32(66.7%) positive for CEA mRNA. The positive detection rates of micrometastasis in 44 lymph nodes from lung cancer patients were 36.4% (16 out of 44) for LUNX mRNA, 27.3% (12 out of 44) for CK19 mRNA and 40.9% (18 out of 44) for CEA mRNA. 3) In the 30 blood samples from patients with pulmonary benign diseases, 2 (6.7%) expressed CK19 mRNA, but none expressed LUNX mRNA or CEA mRNA. All the 3 molecular markers were negative in the 10 blood samples from healthy volunteers. In 11 lymph nodes from patients with pulmonary benign lesions, none was positive for any of the three markers. 4) In 44 regional lymph nodes from lung cancer patients, 6 (13.6%) were positive for metastasis by histopathological examination, with a positive rate significantly lower than that of the RT-PCR (P<0.05). 5) The micrometastatic positive rate in the peripheral blood of 40 non-small cell lung cancer (NSCLC) patients was significantly related to TNM stage (P=0.01). Conclusions: LUNX mRNA, CK19 MRNA, CEA mRNA are all appropriate target genes for the detection of micrometastasis from lung cancer. LUNX mRNA and CEA mRNA

Performance of Pre-processing Schemes with Imperfect Channel State Information

DEFF Research Database (Denmark)

Christensen, Søren Skovgaard; Kyritsi, Persa; De Carvalho, Elisabeth

2006-01-01

Pre-processing techniques have several benefits when the CSI is perfect. In this work we investigate three linear pre-processing filters, assuming imperfect CSI caused by noise degradation and channel temporal variation. Results indicate, that the LMMSE filter achieves the lowest BER and the high......Pre-processing techniques have several benefits when the CSI is perfect. In this work we investigate three linear pre-processing filters, assuming imperfect CSI caused by noise degradation and channel temporal variation. Results indicate, that the LMMSE filter achieves the lowest BER...... and the highest SINR when the CSI is perfect, whereas the simple matched filter may be a good choice when the CSI is imperfect. Additionally the results give insight into the inherent trade-off between robustness against CSI imperfections and spatial focusing ability....

A Study of the pre-retirement program implementation for KAERI nuclear experts

International Nuclear Information System (INIS)

Hong, Hyo-Jeong; Hwang, Hye-Seon; Nam, Young-Mi; Jin, You-Rim; Song, Eun-Ju

2017-01-01

people in Korea take far more of interests in the nuclear power and whether they are well prepared in the lack of professional human resources in it in the foreseeable future. It is not only personal concern anymore, but also national concern. In particular, retirement of the experts in nuclear field is likely to lose our competitiveness in the world. It is urgent for the government and institutions in Korea to develop and implement educational programs to secure talented new workers in the field. This study analyzes the cases of development and application of pre-retirement education program of professional talent for nuclear R and D and then, develops programs to help nuclear experts retire. In the aging society, the retirement of nuclear experts is a national issue that can't be held off rather than each worker's problem. There are people at the heart of nuclear power. This is because they do all the things like nuclear research and development, and construction. Therefore, it is important to nurture and manage nuclear experts to ensure the sustainable development of nuclear with safety. This program could be also a part of it. KAERI is the organization that represents domestic nuclear research, and it is their urgent task to prepare for aging.

High temperature nuclear process heat systems for chemical processes

International Nuclear Information System (INIS)

Jiacoletti, R.J.

1976-01-01

The development planning and status of the very high temperature gas cooled reactor as a source of industrial process heat is presented. The dwindling domestic reserves of petroleum and natural gas dictate major increases in the utilization of coal and nuclear sources to meet the national energy demand. The nuclear process heat system offers a unique combination of the two that is environmentally and economically attractive and technically sound. Conceptual studies of several energy-intensive processes coupled to a nuclear heat source are presented

A KH-Domain RNA-Binding Protein Interacts with FIERY2/CTD Phosphatase-Like 1 and Splicing Factors and Is Important for Pre-mRNA Splicing in Arabidopsis

KAUST Repository

Chen, Tao; Cui, Peng; Chen, Hao; Ali, Shahjahan; Zhang, ShouDong; Xiong, Liming

2013-01-01

Eukaryotic genomes encode hundreds of RNA-binding proteins, yet the functions of most of these proteins are unknown. In a genetic study of stress signal transduction in Arabidopsis, we identified a K homology (KH)-domain RNA-binding protein, HOS5 (High Osmotic Stress Gene Expression 5), as required for stress gene regulation and stress tolerance. HOS5 was found to interact with FIERY2/RNA polymerase II (RNAP II) carboxyl terminal domain (CTD) phosphatase-like 1 (FRY2/CPL1) both in vitro and in vivo. This interaction is mediated by the first double-stranded RNA-binding domain of FRY2/CPL1 and the KH domains of HOS5. Interestingly, both HOS5 and FRY2/CPL1 also interact with two novel serine-arginine (SR)-rich splicing factors, RS40 and RS41, in nuclear speckles. Importantly, FRY2/CPL1 is required for the recruitment of HOS5. In fry2 mutants, HOS5 failed to be localized in nuclear speckles but was found mainly in the nucleoplasm. hos5 mutants were impaired in mRNA export and accumulated a significant amount of mRNA in the nuclei, particularly under salt stress conditions. Arabidopsis mutants of all these genes exhibit similar stress-sensitive phenotypes. RNA-seq analyses of these mutants detected significant intron retention in many stress-related genes under salt stress but not under normal conditions. Our study not only identified several novel regulators of pre-mRNA processing as important for plant stress response but also suggested that, in addition to RNAP II CTD that is a well-recognized platform for the recruitment of mRNA processing factors, FRY2/CPL1 may also recruit specific factors to regulate the co-transcriptional processing of certain transcripts to deal with environmental challenges. © 2013 Chen et al.

A KH-Domain RNA-Binding Protein Interacts with FIERY2/CTD Phosphatase-Like 1 and Splicing Factors and Is Important for Pre-mRNA Splicing in Arabidopsis

KAUST Repository

Chen, Tao

2013-10-17

Eukaryotic genomes encode hundreds of RNA-binding proteins, yet the functions of most of these proteins are unknown. In a genetic study of stress signal transduction in Arabidopsis, we identified a K homology (KH)-domain RNA-binding protein, HOS5 (High Osmotic Stress Gene Expression 5), as required for stress gene regulation and stress tolerance. HOS5 was found to interact with FIERY2/RNA polymerase II (RNAP II) carboxyl terminal domain (CTD) phosphatase-like 1 (FRY2/CPL1) both in vitro and in vivo. This interaction is mediated by the first double-stranded RNA-binding domain of FRY2/CPL1 and the KH domains of HOS5. Interestingly, both HOS5 and FRY2/CPL1 also interact with two novel serine-arginine (SR)-rich splicing factors, RS40 and RS41, in nuclear speckles. Importantly, FRY2/CPL1 is required for the recruitment of HOS5. In fry2 mutants, HOS5 failed to be localized in nuclear speckles but was found mainly in the nucleoplasm. hos5 mutants were impaired in mRNA export and accumulated a significant amount of mRNA in the nuclei, particularly under salt stress conditions. Arabidopsis mutants of all these genes exhibit similar stress-sensitive phenotypes. RNA-seq analyses of these mutants detected significant intron retention in many stress-related genes under salt stress but not under normal conditions. Our study not only identified several novel regulators of pre-mRNA processing as important for plant stress response but also suggested that, in addition to RNAP II CTD that is a well-recognized platform for the recruitment of mRNA processing factors, FRY2/CPL1 may also recruit specific factors to regulate the co-transcriptional processing of certain transcripts to deal with environmental challenges. © 2013 Chen et al.

Next Generation Nuclear Plant Pre-Conceptual Design Report

International Nuclear Information System (INIS)

Larry Demick; Doug Vandel

2007-01-01

management of the project using commercial processes, share the cost of design and construction with the government, and secure a commercial nuclear operating company to operate the plant. In FY-07, Pre-Conceptual Design (PCD) work was completed by the NGNP Project at the INL with the objective of developing a framework in which the design and technology development of the NGNP could progress and to begin to develop bases for selection of the specific design and operational characteristics of NGNP. This work was completed by three contractor teams with extensive experience in HTGR technology, nuclear power applications, and hydrogen production. The teams were led by Westinghouse Electric Company, LLC; AREVA NP, Inc.; and General Atomics. The scope of work included completion of special studies to address key aspects of the NGNP (e.g., reactor type, power levels, power conversion system [PCS] and heat transfer/transport system [HTS] designs, licensing and end product disposition). The results of these special studies were applied to the development by each contractor of a recommended design for NGNP and a commercial version of the HTGR. These were then used to estimate costs and schedule for design; construction; licensing; startup and testing; operation; and deactivation, decontamination, and decommissioning (DD and D) of the NGNP and an economic assessment for an Nth of a kind (NOAK) commercial plant. A primary objective of this work is to identify research and development (R and D), data needs, and future studies required to support selection of key characteristics of and to support the design and licensing processes for the NGNP. The Preliminary Project Management Plan (PPMP) for the NGNP identifies two planning options that weigh a range of programmatic risks and approaches to mitigating risk. The two options are compliant with the EPAct, but emphasize different approaches to technology development risks, design and construction risks, and the extent of demonstration in

On Markov processes in the hadron-nuclear and nuclear-nuclear collisions at superhigh energies

International Nuclear Information System (INIS)

Lebedeva, A.A.; Rus'kin, V.I.

2001-01-01

In the article the possibility of the Markov processes use as simulation method for mean characteristics of hadron-nuclear and nucleus-nuclear collisions at superhigh energies is discussed. The simple (hadron-nuclear collisions) and non-simple (nucleus-nuclear collisions) non-uniform Markov process of output constant spectrum and absorption in a nucleon's nucleus-target with rapidity y are considered. The expression allowing to simulate the different collision modes were obtained

Enhancing Elementary Pre-service Teachers' Plant Processes Conceptions

Science.gov (United States)

Thompson, Stephen L.; Lotter, Christine; Fann, Xumei; Taylor, Laurie

2016-06-01

Researchers examined how an inquiry-based instructional treatment emphasizing interrelated plant processes influenced 210 elementary pre-service teachers' (PTs) conceptions of three plant processes, photosynthesis, cellular respiration, and transpiration, and the interrelated nature of these processes. The instructional treatment required PTs to predict the fate of a healthy plant in a sealed terrarium (Plant-in-a-Jar), justify their predictions, observe the plant over a 5-week period, and complete guided inquiry activities centered on one of the targeted plant processes each week. Data sources included PTs' pre- and post-predictions with accompanying justifications, course artifacts such as weekly terrarium observations and science journal entries, and group models of the interrelated plant processes occurring within the sealed terraria. A subset of 33 volunteer PTs also completed interviews the week the Plant-in-a-Jar scenario was introduced and approximately 4 months after the instructional intervention ended. Pre- and post-predictions from all PTs as well as interview responses from the subgroup of PTs, were coded into categories based on key plant processes emphasized in the Next Generation Science Standards. Study findings revealed that PTs developed more accurate conceptions of plant processes and their interrelated nature as a result of the instructional intervention. Primary patterns of change in PTs' plant process conceptions included development of more accurate conceptions of how water is used by plants, more accurate conceptions of photosynthesis features, and more accurate conceptions of photosynthesis and cellular respiration as transformative processes.

Advanced CANDU reactor pre-licensing progress

International Nuclear Information System (INIS)

Popov, N.K.; West, J.; Snell, V.G.; Ion, R.; Archinoff, G.; Xu, C.

2005-01-01

The Advanced CANDU Reactor (ACR) is an evolutionary advancement of the current CANDU 6 reactor, aimed at producing electrical power for a capital cost and at a unit-energy cost significantly less than that of the current reactor designs. The Canadian Nuclear Safety Commission (CNSC) staff are currently reviewing the ACR design to determine whether, in their opinion, there are any fundamental barriers that would prevent the licensing of the design in Canada. This CNSC licensability review will not constitute a licence, but is expected to reduce regulatory risk. The CNSC pre-licensing review started in September 2003, and was focused on identifying topics and issues for ACR-700 that will require a more detailed review. CNSC staff reviewed about 120 reports, and issued to AECL 65 packages of questions and comments. Currently CNSC staff is reviewing AECL responses to all packages of comments. AECL has recently refocused the design efforts to the ACR-1000, which is a larger version of the ACR design. During the remainder of the pre-licensing review, the CNSC review will be focused on the ACR-1000. AECL Technologies Inc. (AECLT), a wholly-owned US subsidiary of AECL, is engaged in a pre-application process for the ACR-700 with the US Nuclear Regulatory Commission (USNRC) to identify and resolve major issues prior to entering a formal process to obtain standard design certification. To date, the USNRC has produced a Pre-Application Safety Assessment Report (PASAR), which contains their reviews of key focus topics. During the remainder of the pre-application phase, AECLT will address the issues identified in the PASAR. Pursuant to the bilateral agreement between AECL and the Chinese nuclear regulator, the National Nuclear Safety Administration (NNSA) and its Nuclear Safety Center (NSC), NNSA/NSC are reviewing the ACR in seven focus areas. The review started in September 2004, and will take three years. The main objective of the review is to determine how the ACR complies

Metabonomics for detection of nuclear materials processing

International Nuclear Information System (INIS)

Alam, Todd Michael; Luxon, Bruce A.; Neerathilingam, Muniasamy; Ansari, S.; Volk, David; Sarkar, S.; Alam, Mary Kathleen

2010-01-01

Tracking nuclear materials production and processing, particularly covert operations, is a key national security concern, given that nuclear materials processing can be a signature of nuclear weapons activities by US adversaries. Covert trafficking can also result in homeland security threats, most notably allowing terrorists to assemble devices such as dirty bombs. Existing methods depend on isotope analysis and do not necessarily detect chronic low-level exposure. In this project, indigenous organisms such as plants, small mammals, and bacteria are utilized as living sensors for the presence of chemicals used in nuclear materials processing. Such 'metabolic fingerprinting' (or 'metabonomics') employs nuclear magnetic resonance (NMR) spectroscopy to assess alterations in organismal metabolism provoked by the environmental presence of nuclear materials processing, for example the tributyl phosphate employed in the processing of spent reactor fuel rods to extract and purify uranium and plutonium for weaponization.

Role of the mRNA export factor Sus1 in oxidative stress tolerance in Candida albicans.

Science.gov (United States)

Xiao, Chenpeng; Yu, Qilin; Zhang, Bing; Li, Jianrong; Zhang, Dan; Li, Mingchun

2018-02-05

In eukaryotes, the nuclear export of mRNAs is essential for gene expression. However, little is known about the role of mRNA nuclear export in the important fungal pathogen, Candida albicans. In this study, we identified C. albicans Sus1, a nucleus-localized protein that is required for mRNA export. Interestingly, the sus1Δ/Δ displayed hyper-sensitivity to extracellular oxidative stress, enhanced ROS accumulation and severe oxidative stress-related cell death. More strikingly, although the mutant exhibited normal activation of the expression of oxidative stress response (OSR) genes, it had attenuated activity of ROS scavenging system, which may be attributed to the defect in OSR mRNA export in this mutant. In addition, the virulence of the sus1Δ/Δ was seriously attenuated. Taken together, our findings provide evidence that the mRNA export factor Sus1 plays an important role in oxidative stress tolerance and pathogenesis. Copyright © 2018 Elsevier Inc. All rights reserved.

Enhancing Elementary Pre-Service Teachers' Plant Processes Conceptions

Science.gov (United States)

Thompson, Stephen L.; Lotter, Christine; Fann, Xumei; Taylor, Laurie

2016-01-01

Researchers examined how an inquiry-based instructional treatment emphasizing interrelated plant processes influenced 210 elementary pre-service teachers' (PTs) conceptions of three plant processes, photosynthesis, cellular respiration, and transpiration, and the interrelated nature of these processes. The instructional treatment required PTs to…

Nuclear energy an introduction to the concepts, systems, and applications of nuclear processes

CERN Document Server

Murray, Raymond L; Murphy, Arthur T; Rosenthal, Daniel I

1987-01-01

Nuclear Energy: An Introduction to the Concepts, Systems, and Applications of Nuclear Processes introduces the reader to the concepts, systems, and applications of nuclear processes. It provides a factual description of basic nuclear phenomena, as well as devices and processes that involve nuclear reactions. The problems and opportunities that are inherent in a nuclear age are also highlighted.Comprised of 27 chapters, this book begins with an overview of fundamental facts and principles, with emphasis on energy and states of matter, atoms and nuclei, and nuclear reactions. Radioactivi

Metabonomics for detection of nuclear materials processing.

Energy Technology Data Exchange (ETDEWEB)

Alam, Todd Michael; Luxon, Bruce A. (University Texas Medical Branch); Neerathilingam, Muniasamy (University Texas Medical Branch); Ansari, S. (University Texas Medical Branch); Volk, David (University Texas Medical Branch); Sarkar, S. (University Texas Medical Branch); Alam, Mary Kathleen

2010-08-01

Tracking nuclear materials production and processing, particularly covert operations, is a key national security concern, given that nuclear materials processing can be a signature of nuclear weapons activities by US adversaries. Covert trafficking can also result in homeland security threats, most notably allowing terrorists to assemble devices such as dirty bombs. Existing methods depend on isotope analysis and do not necessarily detect chronic low-level exposure. In this project, indigenous organisms such as plants, small mammals, and bacteria are utilized as living sensors for the presence of chemicals used in nuclear materials processing. Such 'metabolic fingerprinting' (or 'metabonomics') employs nuclear magnetic resonance (NMR) spectroscopy to assess alterations in organismal metabolism provoked by the environmental presence of nuclear materials processing, for example the tributyl phosphate employed in the processing of spent reactor fuel rods to extract and purify uranium and plutonium for weaponization.

Examination of Speed Contribution of Parallelization for Several Fingerprint Pre-Processing Algorithms

Directory of Open Access Journals (Sweden)

GORGUNOGLU, S.

2014-05-01

Full Text Available In analysis of minutiae based fingerprint systems, fingerprints needs to be pre-processed. The pre-processing is carried out to enhance the quality of the fingerprint and to obtain more accurate minutiae points. Reducing the pre-processing time is important for identification and verification in real time systems and especially for databases holding large fingerprints information. Parallel processing and parallel CPU computing can be considered as distribution of processes over multi core processor. This is done by using parallel programming techniques. Reducing the execution time is the main objective in parallel processing. In this study, pre-processing of minutiae based fingerprint system is implemented by parallel processing on multi core computers using OpenMP and on graphics processor using CUDA to improve execution time. The execution times and speedup ratios are compared with the one that of single core processor. The results show that by using parallel processing, execution time is substantially improved. The improvement ratios obtained for different pre-processing algorithms allowed us to make suggestions on the more suitable approaches for parallelization.

Digital signal processing application in nuclear spectroscopy

Directory of Open Access Journals (Sweden)

O. V. Zeynalova

2009-06-01

Full Text Available Digital signal processing algorithms for nuclear particle spectroscopy are described along with a digital pile-up elimination method applicable to equidistantly sampled detector signals pre-processed by a charge-sensitive preamplifier. The signal processing algorithms provided as recursive one- or multi-step procedures which can be easily programmed using modern computer programming languages. The influence of the number of bits of the sampling analogue-to-digital converter to the final signal-to-noise ratio of the spectrometer considered. Algorithms for a digital shaping-filter amplifier, for a digital pile-up elimination scheme and for ballistic deficit correction were investigated using a high purity germanium detector. The pile-up elimination method was originally developed for fission fragment spectroscopy using a Frisch-grid back-to-back double ionisation chamber and was mainly intended for pile-up elimination in case of high alpha-radioactivity of the fissile target. The developed pile-up elimination method affects only the electronic noise generated by the preamplifier. Therefore, the influence of the pile-up elimination scheme on the final resolution of the spectrometer investigated in terms of the distance between piled-up pulses. The efficiency of developed algorithms compared with other signal processing schemes published in literature.

Elevating serotonin pre-partum alters the Holstein dairy cow hepatic adaptation to lactation

Science.gov (United States)

Weaver, Samantha R.; Prichard, Allan S.; Maerz, Noah L.; Prichard, Austin P.; Endres, Elizabeth L.; Hernández-Castellano, Lorenzo E.; Akins, Matthew S.; Bruckmaier, Rupert M.

2017-01-01

Serotonin is known to regulate energy and calcium homeostasis in several mammalian species. The objective of this study was to determine if pre-partum infusions of 5-hydroxytryptophan (5-HTP), the immediate precursor to serotonin synthesis, could modulate energy homeostasis at the level of the hepatocyte in post-partum Holstein and Jersey dairy cows. Twelve multiparous Holstein cows and twelve multiparous Jersey cows were intravenously infused daily for approximately 7 d pre-partum with either saline or 1 mg/kg bodyweight of 5-HTP. Blood was collected for 14 d post-partum and on d30 post-partum. Liver biopsies were taken on d1 and d7 post-partum. There were no changes in the circulating concentrations of glucose, insulin, glucagon, non-esterified fatty acids, or urea nitrogen in response to treatment, although there were decreased beta-hydroxybutyrate concentrations with 5-HTP treatment around d6 to d10 post-partum, particularly in Jersey cows. Cows infused with 5-HTP had increased hepatic serotonin content and increased mRNA expression of the serotonin 2B receptor on d1 and d7 post-partum. Minimal changes were seen in the hepatic mRNA expression of various gluconeogenic enzymes. There were no changes in the mRNA expression profile of cell-cycle progression marker cyclin-dependent kinase 4 or apoptotic marker caspase 3, although proliferating cell nuclear antigen expression tended to be increased in Holstein cows infused with 5-HTP on d1 post-partum. Immunofluorescence assays showed an increased number of CASP3- and Ki67-positive cells in Holstein cows infused with 5-HTP on d1 post-partum. Given the elevated hepatic serotonin content and increased mRNA abundance of 5HTR2B, 5-HTP infusions may be stimulating an autocrine-paracrine adaptation to lactation in the Holstein cow liver. PMID:28922379

Elevating serotonin pre-partum alters the Holstein dairy cow hepatic adaptation to lactation.

Directory of Open Access Journals (Sweden)

Samantha R Weaver

Full Text Available Serotonin is known to regulate energy and calcium homeostasis in several mammalian species. The objective of this study was to determine if pre-partum infusions of 5-hydroxytryptophan (5-HTP, the immediate precursor to serotonin synthesis, could modulate energy homeostasis at the level of the hepatocyte in post-partum Holstein and Jersey dairy cows. Twelve multiparous Holstein cows and twelve multiparous Jersey cows were intravenously infused daily for approximately 7 d pre-partum with either saline or 1 mg/kg bodyweight of 5-HTP. Blood was collected for 14 d post-partum and on d30 post-partum. Liver biopsies were taken on d1 and d7 post-partum. There were no changes in the circulating concentrations of glucose, insulin, glucagon, non-esterified fatty acids, or urea nitrogen in response to treatment, although there were decreased beta-hydroxybutyrate concentrations with 5-HTP treatment around d6 to d10 post-partum, particularly in Jersey cows. Cows infused with 5-HTP had increased hepatic serotonin content and increased mRNA expression of the serotonin 2B receptor on d1 and d7 post-partum. Minimal changes were seen in the hepatic mRNA expression of various gluconeogenic enzymes. There were no changes in the mRNA expression profile of cell-cycle progression marker cyclin-dependent kinase 4 or apoptotic marker caspase 3, although proliferating cell nuclear antigen expression tended to be increased in Holstein cows infused with 5-HTP on d1 post-partum. Immunofluorescence assays showed an increased number of CASP3- and Ki67-positive cells in Holstein cows infused with 5-HTP on d1 post-partum. Given the elevated hepatic serotonin content and increased mRNA abundance of 5HTR2B, 5-HTP infusions may be stimulating an autocrine-paracrine adaptation to lactation in the Holstein cow liver.

Ribonucleoprotein organization of eukaryotic RNA. XXXII. U2 small nuclear RNA precursors and their accurate 3' processing in vitro as ribonucleoprotein particles.

Science.gov (United States)

Wieben, E D; Nenninger, J M; Pederson, T

1985-05-05

Biosynthetic precursors of U2 small nuclear RNA have been identified in cultured human cells by hybrid-selection of pulse-labeled RNA with cloned U2 DNA. These precursor molecules are one to approximately 16 nucleotides longer than mature U2 RNA and contain 2,2,7-trimethylguanosine "caps". The U2 RNA precursors are associated with proteins that react with a monoclonal antibody for antigens characteristic of small nuclear ribonucleoprotein particles. Like previously described precursors of U1 and U4 small nuclear RNAs, the pre-U2 RNAs are recovered in cytoplasmic fractions, although it is not known if this is their location in vivo. The precursors are processed to mature-size U2 RNA when cytoplasmic extracts are incubated in vitro at 37 degrees C. Mg2+ is required but ATP is not. The ribonucleoprotein structure of the pre-U2 RNA is maintained during the processing reaction in vitro, as are the 2,2,7-trimethylguanosine caps. The ribonucleoprotein organization is of major importance, as exogenous, protein-free U2 RNA precursors are degraded rapidly in the in vitro system. Two lines of evidence indicate that the conversion of U2 precursors to mature-size U2 RNA involves a 3' processing reaction. First, the reaction is unaffected by a large excess of mature U2 small nuclear RNP, whose 5' trimethylguanosine caps would be expected to compete for a 5' processing activity. Second, when pre-U2 RNA precursors are first stoichiometrically decorated with an antibody specific for 2,2,7-trimethylguanosine, the extent of subsequent processing in vitro is unaffected. These results provide the first demonstration of a eukaryotic RNA processing reaction in vitro occurring within a ribonucleoprotein particle.

International nuclear model and code comparison on pre-equilibrium effects

International Nuclear Information System (INIS)

Gruppelaar, H.; van der Kamp, H.A.J.; Nagel, P.

1983-01-01

This paper gives the specification of an intercomparison of statistical nuclear models and codes with emphasis on pre-equilibrium effects. It is partly based upon the conclusions of a meeting of an ad-hoc working group on this subject. The parameters studied are: masses, Q values, level scheme data, optical model parameters, X-ray competition parameters, total level-density specifications, for 86 Rb, 89 Sr, 90 Y, 92 Y, 92 Zr, 93 Zr, 89 Y, 91 Nb, 92 Nb and 93 Nb

CCS mRNA transcripts and serum CCS protein as copper marker in adults suffering inflammatory processes.

Science.gov (United States)

Araya, Magdalena; Gutiérrez, Ricardo; Arredondo, Miguel

2014-08-01

The chaperone to Zn-Cu superoxide dismutase (CCS) has been postulated as a candidate copper indicator, changing in a consistent manner in induced and recovered copper deficiency, in experimental cell and animal models. In real life people have various conditions that may modify molecules acting as acute phase proteins, such as serum ceruloplasmin and copper concentration and could alter CCS responses. With the hypothesis that CCS mRNA transcripts and protein would be different in individuals suffering inflammatory processes in comparison to healthy individuals, we assessed adult individuals who, although not ill had conditions known to induce variable degrees of inflammation. Screening of 600 adults resulted in two study groups, formed on the basis of their clinical history and levels of serum C reactive protein (CRP): Group 1 (n = 61, mean (range) CRP = 0.9 (0.3-2.0 mg/dL) and Group 2 (n = 150, mean (range) CRP = 6.1 (4.3-8.7 mg/dL). Results showed that mRNA transcripts relative abundance was not different for CCS, MTIIA, TNF-alpha and Cu-Zn-SOD by group (p > 0.05, one way Anova), nor between sexes (p > 0.05, one way Anova). Distribution of CCS mRNA transcripts and CCS protein in serum did not show any differences or trends. Results disproved our hypothesis that CCS abundance of transcripts and CCS protein would be different in individuals suffering inflammatory processes, adding further support to the idea that CCS may be a copper marker.

Image processing technology for nuclear facilities

International Nuclear Information System (INIS)

Lee, Jong Min; Lee, Yong Beom; Kim, Woong Ki; Park, Soon Young

1993-05-01

Digital image processing technique is being actively studied since microprocessors and semiconductor memory devices have been developed in 1960's. Now image processing board for personal computer as well as image processing system for workstation is developed and widely applied to medical science, military, remote inspection, and nuclear industry. Image processing technology which provides computer system with vision ability not only recognizes nonobvious information but processes large information and therefore this technique is applied to various fields like remote measurement, object recognition and decision in adverse environment, and analysis of X-ray penetration image in nuclear facilities. In this report, various applications of image processing to nuclear facilities are examined, and image processing techniques are also analysed with the view of proposing the ideas for future applications. (Author)

The alkaline pre-filming process of the RWCU piping surface

Energy Technology Data Exchange (ETDEWEB)

Kao, D-Y.; Wen, T-J., E-mail: dahyukao@iner.gov.tw [Atomic Energy Council, Inst. of Nuclear Energy Research, Lungtan Taoyuan, Taiwan (China); Fong, C., E-mail: clinton@itri.org.tw [Industrial Technology Research Inst., Chutung, Hsinchu (China); Lu, J-H., E-mail: u879864@taipower.com.tw [Taiwan Power Co., Lungmen Nuclear Power Plant, Gongliao Township, Taipei County (China)

2010-07-01

The radiation dose rate on a BWR can cause great damage to operators and their maintenances working quality, so it is very important to lower it. The RWCU of a BWR primary system has the highest radiation dose rate and deposition of an active corrosion product because of: continually cleaning the reactor water and the repeated, acute change of temperature. The Lungmen NPP was built as an advanced BWR (ABWR) system. All new ABWRs in Japan, such as Kashiwazaki-Kariwa NPP units K6 and K7, Hamaoka NPP unit H5, and Shika NPP unit2, were given in passivation treatment in the stage of nuclear heating or flow-induced vibration (FIV) testing before each plant's initial start up. The conditions of alkaline pre-filming process include: pH, dissolve oxygen (DO) and temperature. This project had been decided by the results of earlier water loop testing. Three kinds of specimens including stainless steel AISI SS316L and carbon steel SA106 GrB, SA333 Gr6 were put into the autoclave located at a bypass system during the process of passivation treatment. The materials of these specimens have been used in RWCU piping, and during the alkaline pre-filming process they were monitored by AC impedances and electrochemical corrosion potential (ECP). Their surface analyses including SEM, EDS, ESCA and SIMS data were obtained from the initial test, and obtained every six months thereafter. From the SEM plot of first issue it was found that the specimens' surface of all three different materials presented excellent levels of oxidized pellets. They are almost completely packed, for both large and small granules, and the porosity is less than 40%. The deposition tests of cobalt ion were also completed. The material of stainless steel was nearly not affected through the passive process. However, carbon steel could reduce about 30% to 50% of deposited cobalt ion. This result follows the conclusion of Hatch Company. Based on the nominal cost of radiation protection, i.e. 10000 USD

Regulation of mRNA Levels by Decay-Promoting Introns that Recruit the Exosome Specificity Factor Mmi1

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Cornelia Kilchert

2015-12-01

Full Text Available In eukaryotic cells, inefficient splicing is surprisingly common and leads to the degradation of transcripts with retained introns. How pre-mRNAs are committed to nuclear decay is unknown. Here, we uncover a mechanism by which specific intron-containing transcripts are targeted for nuclear degradation in fission yeast. Sequence elements within these “decay-promoting” introns co-transcriptionally recruit the exosome specificity factor Mmi1, which induces degradation of the unspliced precursor and leads to a reduction in the levels of the spliced mRNA. This mechanism negatively regulates levels of the RNA helicase DDX5/Dbp2 to promote cell survival in response to stress. In contrast, fast removal of decay-promoting introns by co-transcriptional splicing precludes Mmi1 recruitment and relieves negative expression regulation. We propose that decay-promoting introns facilitate the regulation of gene expression. Based on the identification of multiple additional Mmi1 targets, including mRNAs, long non-coding RNAs, and sn/snoRNAs, we suggest a general role in RNA regulation for Mmi1 through transcript degradation.

Nuclear Data Processing for Reactor Physics Calculation

International Nuclear Information System (INIS)

Suwoto; Zuhair; Pandiangan, Tumpal

2003-01-01

Nuclear data processing for reactor physics calculation has been done. Raw nuclear data cross-sections on file ENDF should be prepared and processed before it used in neutronic calculation. The processing code system such as NJOY-PC code has been used from linearization of nuclear cross-sections data and background contribution of resonance parameter (MF2) using RECONR module (0K) with energy range from 10 -5 to 10 7 eV. Afterward, the neutron cross-sections data should be processed and broadened to desire temperature (i.e. 293K) by using BROADR module. The Grouper and Therma modules will be applied for multi-groups calculation which suitable for WIMS/D4 (69 groups) and thermalization of nuclear constants. The final stage of processing nuclear cross-sections is updating WIMS/D4 library. The WIMSR module in NJOY-PC and WILLIE code will be applied in this stage. The evaluated nuclear data file, especially for 1 H 1 isotope, was taken from JENDL-3.2 and ENDF/B-VI for preliminary study. The results of nuclear data processing 1 H 1 shows that the old-WIMS (WIMS-lama) library have much discrepancies comparing with JENDL-3.2 or ENDF/B-VI files, especially in energy around 5 keV

Pre-Service Teachers' Perceptions with Regard to Teaching-Learning Processes

Science.gov (United States)

Özdas, Faysal

2018-01-01

Teaching-learning process has a great important medium where pre-service teachers develop experiences and competences. Pre-service teachers are introduced to this process in a professional sense through the school experience course in teacher training. In this process, it is crucial to identify the encountered difficulties and matters. For this…

Pre-Service Science Teachers' Views about Nuclear Energy with Respect to Gender and University Providing Instruction

Science.gov (United States)

Ates, H.; Saracoglu, M.

2016-01-01

The purpose of this research was to investigate pre-service science teachers' (PST) views about nuclear energy and to examine what effects, if any, of gender and the university of instruction had on their views. Data were collected through the Risks and Benefits about Nuclear Energy Scale (Iseri, 2012). The sample consisted of 214 PSTs who…

American Elementary Education Pre-Service Teachers' Attitudes towards Biotechnology Processes

Science.gov (United States)

Chabalengula, Vivien Mweene; Mumba, Frackson; Chitiyo, Jonathan

2011-01-01

This study examined elementary education pre-service teachers' attitudes towards biotechnology processes. A sample comprised 88 elementary education pre-service teachers at a mid-sized university in the Midwest of the USA. Sixty and 28 of these pre-service teachers were enrolled in Introductory Science Methods course and Advance Science Methods…

Oestradiol reduces Liver Receptor Homolog-1 mRNA transcript stability in breast cancer cell lines

International Nuclear Information System (INIS)

Lazarus, Kyren A.; Zhao, Zhe; Knower, Kevin C.; To, Sarah Q.; Chand, Ashwini L.; Clyne, Colin D.

2013-01-01

Highlights: •LRH-1 is an orphan nuclear receptor that regulates tumor proliferation. •In breast cancer, high mRNA expression is associated with ER+ status. •In ER−ve cells, despite very low mRNA, we found abundant LRH-1 protein. •Our data show distinctly different LRH-1 protein isoforms in ER− and ER+ breast cancer cells. •This is due to differences in LRH-1 mRNA and protein stability rates. -- Abstract: The expression of orphan nuclear receptor Liver Receptor Homolog-1 (LRH-1) is elevated in breast cancer and promotes proliferation, migration and invasion in vitro. LRH-1 expression is regulated by oestrogen (E 2 ), with LRH-1 mRNA transcript levels higher in oestrogen receptor α (ERα) positive (ER+) breast cancer cells compared to ER− cells. However, the presence of LRH-1 protein in ER− cells suggests discordance between mRNA transcript levels and protein expression. To understand this, we investigated the impact of mRNA and protein stability in determining LRH-1 protein levels in breast cancer cells. LRH-1 transcript levels were significantly higher in ER+ versus ER− breast cancer cells lines; however LRH-1 protein was expressed at similar levels. We found LRH-1 mRNA and protein was more stable in ER− compared to ER+ cell lines. The tumor-specific LRH-1 variant isoform, LRH-1v4, which is highly responsive to E 2 , showed increased mRNA stability in ER− versus ER+ cells. In addition, in MCF-7 and T47-D cell lines, LRH-1 total mRNA stability was reduced with E 2 treatment, this effect mediated by ERα. Our data demonstrates that in ER− cells, increased mRNA and protein stability contribute to the abundant protein expression levels. Expression and immunolocalisation of LRH-1 in ER− cells as well as ER− tumors suggests a possible role in the development of ER− tumors. The modulation of LRH-1 bioactivity may therefore be beneficial as a treatment option in both ER− and ER+ breast cancer

Oestradiol reduces Liver Receptor Homolog-1 mRNA transcript stability in breast cancer cell lines

Energy Technology Data Exchange (ETDEWEB)

Lazarus, Kyren A. [Cancer Drug Discovery Laboratory, Prince Henry’s Institute of Medical Research, Clayton, Victoria 3168 (Australia); Environmental and Biotechnology Centre, Swinburne University, Hawthorn, Victoria 3122 (Australia); Zhao, Zhe; Knower, Kevin C. [Cancer Drug Discovery Laboratory, Prince Henry’s Institute of Medical Research, Clayton, Victoria 3168 (Australia); To, Sarah Q. [Cancer Drug Discovery Laboratory, Prince Henry’s Institute of Medical Research, Clayton, Victoria 3168 (Australia); Department of Biochemistry and Molecular Biology, Monash University, Clayton, Victoria 3168 (Australia); Chand, Ashwini L. [Cancer Drug Discovery Laboratory, Prince Henry’s Institute of Medical Research, Clayton, Victoria 3168 (Australia); Clyne, Colin D., E-mail: Colin.clyne@princehenrys.org [Cancer Drug Discovery Laboratory, Prince Henry’s Institute of Medical Research, Clayton, Victoria 3168 (Australia); Department of Biochemistry and Molecular Biology, Monash University, Clayton, Victoria 3168 (Australia)

2013-08-30

Highlights: •LRH-1 is an orphan nuclear receptor that regulates tumor proliferation. •In breast cancer, high mRNA expression is associated with ER+ status. •In ER−ve cells, despite very low mRNA, we found abundant LRH-1 protein. •Our data show distinctly different LRH-1 protein isoforms in ER− and ER+ breast cancer cells. •This is due to differences in LRH-1 mRNA and protein stability rates. -- Abstract: The expression of orphan nuclear receptor Liver Receptor Homolog-1 (LRH-1) is elevated in breast cancer and promotes proliferation, migration and invasion in vitro. LRH-1 expression is regulated by oestrogen (E{sub 2}), with LRH-1 mRNA transcript levels higher in oestrogen receptor α (ERα) positive (ER+) breast cancer cells compared to ER− cells. However, the presence of LRH-1 protein in ER− cells suggests discordance between mRNA transcript levels and protein expression. To understand this, we investigated the impact of mRNA and protein stability in determining LRH-1 protein levels in breast cancer cells. LRH-1 transcript levels were significantly higher in ER+ versus ER− breast cancer cells lines; however LRH-1 protein was expressed at similar levels. We found LRH-1 mRNA and protein was more stable in ER− compared to ER+ cell lines. The tumor-specific LRH-1 variant isoform, LRH-1v4, which is highly responsive to E{sub 2}, showed increased mRNA stability in ER− versus ER+ cells. In addition, in MCF-7 and T47-D cell lines, LRH-1 total mRNA stability was reduced with E{sub 2} treatment, this effect mediated by ERα. Our data demonstrates that in ER− cells, increased mRNA and protein stability contribute to the abundant protein expression levels. Expression and immunolocalisation of LRH-1 in ER− cells as well as ER− tumors suggests a possible role in the development of ER− tumors. The modulation of LRH-1 bioactivity may therefore be beneficial as a treatment option in both ER− and ER+ breast cancer.

A Conversation on Data Mining Strategies in LC-MS Untargeted Metabolomics: Pre-Processing and Pre-Treatment Steps

Directory of Open Access Journals (Sweden)

Fidele Tugizimana

2016-11-01

Full Text Available Untargeted metabolomic studies generate information-rich, high-dimensional, and complex datasets that remain challenging to handle and fully exploit. Despite the remarkable progress in the development of tools and algorithms, the “exhaustive” extraction of information from these metabolomic datasets is still a non-trivial undertaking. A conversation on data mining strategies for a maximal information extraction from metabolomic data is needed. Using a liquid chromatography-mass spectrometry (LC-MS-based untargeted metabolomic dataset, this study explored the influence of collection parameters in the data pre-processing step, scaling and data transformation on the statistical models generated, and feature selection, thereafter. Data obtained in positive mode generated from a LC-MS-based untargeted metabolomic study (sorghum plants responding dynamically to infection by a fungal pathogen were used. Raw data were pre-processed with MarkerLynxTM software (Waters Corporation, Manchester, UK. Here, two parameters were varied: the intensity threshold (50–100 counts and the mass tolerance (0.005–0.01 Da. After the pre-processing, the datasets were imported into SIMCA (Umetrics, Umea, Sweden for more data cleaning and statistical modeling. In addition, different scaling (unit variance, Pareto, etc. and data transformation (log and power methods were explored. The results showed that the pre-processing parameters (or algorithms influence the output dataset with regard to the number of defined features. Furthermore, the study demonstrates that the pre-treatment of data prior to statistical modeling affects the subspace approximation outcome: e.g., the amount of variation in X-data that the model can explain and predict. The pre-processing and pre-treatment steps subsequently influence the number of statistically significant extracted/selected features (variables. Thus, as informed by the results, to maximize the value of untargeted metabolomic data

The licensing processes influence on nuclear market

International Nuclear Information System (INIS)

Locatelli, Giorgio; Mancini, Mauro; Sainati, Tristano; Sallinen, Liisa

2011-01-01

The paper deals with the licensing nuclear power plants; it focuses primarily on the licensing process implications into the international nuclear market. Nowadays there are twenty-six countries that are planning to build new nuclear facilities, and thirty-seven where nuclear reactors are proposed; on the other hand, there are mainly ten international reactor vendors. At international level, there are few vendors that have sufficient resources, capabilities and experience to carry out the design and delivering of a nuclear power plant in the international market; On the other hand, the licensing processes are strictly dependent on national law frameworks, and on the nuclear policies. The paper proposes a comparison of six licensing processes (the ones established in Finland, France, Italy, South Korea, USA and UK), and analyzes its main features and implications; the IAEA licensing process is taken as reference point. The objective of the paper is to propose a systemic approach for considering the licensing procedures. The framework proposed enables facilitating the licensing management and inferring the main features of licensing contexts. The paper concludes with a forecast of the nuclear licensing context, especially with respect to the fourth generation of nuclear reactors. (author)

Process instrumentation for nuclear power station

International Nuclear Information System (INIS)

Yanai, Katsuya; Shinohara, Katsuhiko

1978-01-01

Nuclear power stations are the large scale compound system composed of many process systems. Accordingly, for the safe and high reliability operation of the plants, it is necessary to grasp the conditions of respective processes exactly and control the operation correctly. For this purpose, the process instrumentation undertakes the important function to monitor the plant operation. Hitachi Ltd. has exerted ceaseless efforts since long before to establish the basic technology for the process instrumentation in nuclear power stations, to develop and improve hardwares of high reliability, and to establish the quality control system. As for the features of the process instrumentation in nuclear power stations, the enormous quantity of measurement, the diversity of measured variables, the remote measurement and monitoring method, and the ensuring of high reliability are enumerated. Also the hardwares must withstand earthquakes, loss of coolant accidents, radiations, leaks and fires. Hitachi Unitrol Sigma Series is the measurement system which is suitable to the general process instrumentation in nuclear power stations, and satisfies sufficiently the basic requirements described above. It has various features as the nuclear energy system, such as high reliability by the use of ICs, the methods of calculation and transmission considering signal linkage, loop controller system and small size. HIACS-1000 Series is the analog controller of high reliability for water control. (Kako, I.)

Pre operational background radiation monitoring around Kudankulam Nuclear Power Project site - a decade long experience

International Nuclear Information System (INIS)

Vijayakumar, B.; George, Thomas; Sundara Rajan, P.; Selvi, B.S.; Balamurugan, M.; Pandit, G.G.; Ravi, P.M.; Tripathi, R.M.

2014-01-01

Pre-operational environmental background radiation monitoring around nuclear power plants is very important to understand baseline values existing in the site and also to identify any hot spots of naturally occurring high background radiation areas and their sources. These baseline measurements will act as a benchmark for future comparison after the reactors go into operation. The radiation measurements are continued during the operational phase of the plant and the results are compared to see whether there is any impact of the operation of the plant on the environment. A comprehensive background radiation monitoring plan has been in vogue at site from 2004 to meet this objective. This paper describes the different monitoring strategies adopted around Kudankulam Nuclear Power Project site and throws light on the pre operational background radiation levels in the environment

Comparative performance evaluation of transform coding in image pre-processing

Science.gov (United States)

Menon, Vignesh V.; NB, Harikrishnan; Narayanan, Gayathri; CK, Niveditha

2017-07-01

We are in the midst of a communication transmute which drives the development as largely as dissemination of pioneering communication systems with ever-increasing fidelity and resolution. Distinguishable researches have been appreciative in image processing techniques crazed by a growing thirst for faster and easier encoding, storage and transmission of visual information. In this paper, the researchers intend to throw light on many techniques which could be worn at the transmitter-end in order to ease the transmission and reconstruction of the images. The researchers investigate the performance of different image transform coding schemes used in pre-processing, their comparison, and effectiveness, the necessary and sufficient conditions, properties and complexity in implementation. Whimsical by prior advancements in image processing techniques, the researchers compare various contemporary image pre-processing frameworks- Compressed Sensing, Singular Value Decomposition, Integer Wavelet Transform on performance. The paper exposes the potential of Integer Wavelet transform to be an efficient pre-processing scheme.

The acceptance of gamma irradiated pre-cooked processed chicken meat products

International Nuclear Information System (INIS)

Seri Chempaka Mohd Yusof; Muhamad Lebai Juri; Foziah Ali; Salahbiah Abdul Majida; Mariani Deraman; Ros Anita Ahmad Ramli; Rohaizah Ahmad; Zainab Harun; Abdul Salam Babji

2009-01-01

A study was carried out to determine suitable dose, microbiological counts including pathogens and sensory evaluation of pre-cooked chicken meat products in assessing the acceptability of irradiated pre-cooked chicken meat products. Packed pre-cooked chicken sausages and burger samples (sealed individually in plastic-polyethylene pouches) were irradiated at the following doses: 2.5 kGy, 3.5 kGy and 5.5 kGy using 60 Co gamma irradiation at MINTec-Sinagama. Acceptability of the sausages was determined through sensory evaluation by 30 members of untrained panelists comprising staff of Malaysian Nuclear Agency. A 5-points hedonic rating scale was used. The attributes evaluated were taste, texture, chewiness, juiciness, aroma, colour, shape and overall acceptance. Samples irradiated with dose of 5.5 kGy were the most acceptable, followed by samples irradiated at 3.5 kGy and 10 kGy. Irradiation at doses up to 3.5 kGy render undetectable microorganisms/fungi and pathogens (faecal coliforms, Salmonella sp., Escherichia coli and Staphylococcus aureus) in pre-cooked chicken sausages, and doses up to 5.5 kGy for pre-cooked chicken burgers

Spatial Organization and Dynamics of Transcription Elongation and Pre-mRNA Processing in Live Cells

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Miguel Sánchez-Álvarez

2011-01-01

Full Text Available During the last 30 years, systematic biochemical and functional studies have significantly expanded our knowledge of the transcriptional molecular components and the pre-mRNA processing machinery of the cell. However, our current understanding of how these functions take place spatiotemporally within the highly compartmentalized eukaryotic nucleus remains limited. Moreover, it is increasingly clear that “the whole is more than the sum of its parts” and that an understanding of the dynamic coregulation of genes is essential for fully characterizing complex biological phenomena and underlying diseases. Recent technological advances in light microscopy in addition to novel cell and molecular biology approaches have led to the development of new tools, which are being used to address these questions and may contribute to achieving an integrated and global understanding of how the genome works at a cellular level. Here, we review major hallmarks and novel insights in RNA polymerase II activity and pre-mRNA processing in the context of nuclear organization, as well as new concepts and challenges arising from our ability to gather extensive dynamic information at the single-cell resolution.

Effect of packaging on physicochemical characteristics of irradiated pre-processed chicken

International Nuclear Information System (INIS)

Jiang Xiujie; Zhang Dongjie; Zhang Dequan; Li Shurong; Gao Meixu; Wang Zhidong

2011-01-01

To explore the effect of modified atmosphere packaging and antioxidants on the physicochemical characteristics of irradiated pre-processed chicken, the pre-processed chicken was added antioxidants first, and then packaged in common, vacuum and gas respectively, and finally irradiated at 5 kGy dosage. All samples was stored at 4 ℃. The pH, TBA, TVB-N and color deviation were evaluated after 0, 3, 7, 10, 14, 18 and 21 d of storage. The results showed that pH value of pre-processed chicken with antioxidants and vacuum packaged increased with the storage time but not significantly among different treatments. The TBA value was also increased but not significantly (P > 0.05), which indicated that vacuum package inhibited the lipid oxidation. TVB-N value increased with storage time, TVB-N value of vacuum package samples reached 14.29 mg/100 g at 21 d storage, which did not exceeded the reference indexes of fresh meat. a * value of the pre-processed chicken of vacuum package and non-oxygen package samples increased significantly during storage (P > 0.05), and chicken color kept bright red after 21 d storage with vacuum package It is concluded that vacuum packaging of irradiated pre-processed chicken is effective on ensuring its physical and chemical properties during storage. (authors)

Pre-equilibrium emission and nuclear level densities in neutron induced reactions on Fe, Cr and Ni isotopes

International Nuclear Information System (INIS)

Ivascu, M.; Avrigeanu, M.; Ivascu, I.; Avrigeanu, V.

1989-01-01

The experimentally well known (n,p), (n,α) and (n,2n) reaction excitation functions, from threshold to 20 MeV incident energy, and neutron, proton and alpha-particle emission spectra at 14.8 MeV from Fe, Cr and Ni isotopes are calculated in the frame of a generalized Geometry-Dependent-Hybrid pre-equilibrium emission model, including angular momentum and parity conservation and alpha-particle emission, and the Hauser-Feshbach statistical model. Use of a consistent statistical model parameter set enables the validation of the pre-equilibrium emission model. Moreover, an enhanced pre-equilibrium emission from higher spin composite system states, associated with higher incident orbital momenta, has been evidenced. Higher orbital momenta involved also in the emergent channels of this process are suggested by calculations of the residual nuclei level populations. Finally, the unitary account of the (n, p) and (n, 2n) reaction excitation functions for Fe, Cr and Ni isotopes has allowed the proper establishment of the limits of the transition excitation range between the two different nuclear level density models used at medium and higher excitation energies, respectively. (author). 83 refs, 15 figs

The decapping activator Edc3 and the Q/N-rich domain of Lsm4 function together to enhance mRNA stability and alter mRNA decay pathway dependence in Saccharomyces cerevisiae

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Susanne Huch

2016-10-01

Full Text Available The rate and regulation of mRNA decay are major elements in the proper control of gene expression. Edc3 and Lsm4 are two decapping activator proteins that have previously been shown to function in the assembly of RNA granules termed P bodies. Here, we show that deletion of edc3, when combined with a removal of the glutamine/asparagine rich region of Lsm4 (edc3Δ lsm4ΔC reduces mRNA stability and alters pathways of mRNA degradation. Multiple tested mRNAs exhibited reduced stability in the edc3Δ lsm4ΔC mutant. The destabilization was linked to an increased dependence on Ccr4-mediated deadenylation and mRNA decapping. Unlike characterized mutations in decapping factors that either are neutral or are able to stabilize mRNA, the combined edc3Δ lsm4ΔC mutant reduced mRNA stability. We characterized the growth and activity of the major mRNA decay systems and translation in double mutant and wild-type yeast. In the edc3Δ lsm4ΔC mutant, we observed alterations in the levels of specific mRNA decay factors as well as nuclear accumulation of the catalytic subunit of the decapping enzyme Dcp2. Hence, we suggest that the effects on mRNA stability in the edc3Δ lsm4ΔC mutant may originate from mRNA decay protein abundance or changes in mRNPs, or alternatively may imply a role for P bodies in mRNA stabilization.

Evaluation and processing of nuclear data

International Nuclear Information System (INIS)

Pearlstein, S.

1980-01-01

The role a nuclear data evaluator plays in obtaining evaluated nuclear data, needed for applications, from measured nuclear data is surveyed. Specific evaluation objectives, problems, and procedures are discussed. The use of nuclear systematics to complement nuclear experiment and theory is described. With the Evaluated Nuclear Data File (ENDF) as an example, the formatting, checking, and processing of nuclear data are discussed as well as the testing of evaluated nuclear data in the calculation of integral benchmark experiments. Other important topics such as the Probability Table Method and interrelation between differential and integral data are also discussed. 25 figures

Evaluation and processing of nuclear data

International Nuclear Information System (INIS)

Pearlstein, S.

1981-01-01

The role a nuclear data evaluator plays in obtaining evaluated nuclear data, needed for applications, from measured nuclear data is surveyed. Specific evaluation objectives, problems, and procedures are discussed. The use of nuclear systematics to complement nuclear experiment and theory is described. Using the Evaluated Nuclear Data File (ENDF) as an example the formatting, checking, and processing of nuclear data is discussed as well as the testing of evaluated nuclear data in the calculation of integral benchmark experiments. Other important topics such as the Probability Table Method and interrelation between differential and integral data are also discussed. (author)

Multistep processes in nuclear reactions

International Nuclear Information System (INIS)

Hodgson, P.E.

1988-01-01

The theories of nuclear reactions are reviewed with particular attention to the recent work on multistep processes. The evidence for compound nucleus and direct interaction reactions is described together with the results of comparisons between theories and experimental data. These theories have now proved inadequate, and there is evidence for multistep processes that take place after the initial direct stage but long before the attainment of the statistical equilibrium characteristic of compound nucleus processes. The theories of these reactions are described and it is shown how they can account for the experimental data and thus give a comprehensive understanding of nuclear reactions. (author)

Alkylation and pre-organization of diglycolamide ligands on flexible platforms for nuclear waste treatment

NARCIS (Netherlands)

Leoncini, Andrea

2017-01-01

The research topic of this thesis concerns the synthesis and evaluation of new diglycolamide (DGA) ligands for the extraction and (potential) separation of actinide and lanthanide ions from bulk spent nuclear fuel. This work was aimed at the development of new pre-organised ligands with improved

Astrophysical r- and rp-processes, and radioactive nuclear beams

International Nuclear Information System (INIS)

Boyd, Richard N.

1998-01-01

The modern description of the r-process follows naturally from α-rich freezeout, thought to occur in the hot neutrino wind just beyond the nascent neutron star in a type II supernova. Initially, all pre-existing nuclei are reduced to α-particles and neutrons. As the environment cools, nuclei up to about mass 90 to 100 u are synthesized, in nuclear statistical equilibrium, in about 1 s. In the next few seconds, the remaining neutrons are captured to form the r-process progenitors, which then decay to the r-process nuclides. The rp-process occurs in a high-temperature H-rich environment. It is one of the processes that synthesize the p-process nuclei, the most neutron-poor nuclei in the periodic table. It is thought to occur during the explosion of a C-O white dwarf in a type Ia supernova or in a binary system during accretion onto a white dwarf or a neutron star. It appears to be capable of forming the p-nuclei up to about mass 90 u. Both processes pass through nuclei that are far from stability. Thus, their description requires the masses, half-lives, decay modes, and structure of these nuclei. The next generation of radioactive beam facilities promises to allow the study of many such nuclei. (author)

Arabidopsis mRNA polyadenylation machinery: comprehensive analysis of protein-protein interactions and gene expression profiling

Directory of Open Access Journals (Sweden)

Mo Min

2008-05-01

Full Text Available Abstract Background The polyadenylation of mRNA is one of the critical processing steps during expression of almost all eukaryotic genes. It is tightly integrated with transcription, particularly its termination, as well as other RNA processing events, i.e. capping and splicing. The poly(A tail protects the mRNA from unregulated degradation, and it is required for nuclear export and translation initiation. In recent years, it has been demonstrated that the polyadenylation process is also involved in the regulation of gene expression. The polyadenylation process requires two components, the cis-elements on the mRNA and a group of protein factors that recognize the cis-elements and produce the poly(A tail. Here we report a comprehensive pairwise protein-protein interaction mapping and gene expression profiling of the mRNA polyadenylation protein machinery in Arabidopsis. Results By protein sequence homology search using human and yeast polyadenylation factors, we identified 28 proteins that may be components of Arabidopsis polyadenylation machinery. To elucidate the protein network and their functions, we first tested their protein-protein interaction profiles. Out of 320 pair-wise protein-protein interaction assays done using the yeast two-hybrid system, 56 (~17% showed positive interactions. 15 of these interactions were further tested, and all were confirmed by co-immunoprecipitation and/or in vitro co-purification. These interactions organize into three distinct hubs involving the Arabidopsis polyadenylation factors. These hubs are centered around AtCPSF100, AtCLPS, and AtFIPS. The first two are similar to complexes seen in mammals, while the third one stands out as unique to plants. When comparing the gene expression profiles extracted from publicly available microarray datasets, some of the polyadenylation related genes showed tissue-specific expression, suggestive of potential different polyadenylation complex configurations. Conclusion An

Optimization of Pre-Treatment Process Parameters to Generate Biodiesel from Microalga

Directory of Open Access Journals (Sweden)

Chukwuma Onumaegbu

2018-03-01

Full Text Available Cell disruption is an integral part of microalga production process, which improves the release of intracellular products that are essential for biofuel production. In this work, pre-treatment parameters that will enhance the efficiency of lipid production using high-pressure homogenizer on microalgae biomass will be investigated. The high-pressure homogenizer that is considered is a GYB40-10S/GY60-6S; with a pre-treatment pressure of 1000 psi, 2000 psi, and 3000 psi, the number of passes; 1, 2, and 3, a reaction time of 3, 3.5, and 4 h. Pressure and cavitation increase the efficiency of the pre-treatment process of the homogenizer. In addition, homogenization shear force and pressure are the basic significant factors that enhance the efficiency of microalgae cell rupture. Also, the use of modelling to simulate pre-treatment processes (Response Surface Methodology (RSM, Box-Behnken Designs (BBD, and design of experiment (DOE for process optimization will be adopted in this study. The results clearly demonstrate that high-pressure homogenization pre-treatment can effectively disrupt microalga cell walls to enhance lipid recovery efficiency, with a relatively short extraction time, both that are essential for maintaining a good quality of lipids for biofuel production. A maximum of 18% lipid yields were obtained after 3 h of HPH pre-treatment at 3000 psi.

Process information systems in nuclear reprocessing

International Nuclear Information System (INIS)

Jaeschke, A.; Keller, H.; Orth, H.

1987-01-01

On a production management level, a process information system in a nuclear reprocessing plant (NRP) has to fulfill conventional operating functions and functions for nuclear material surveillance (safeguards). Based on today's state of the art of on-line process control technology, the progress in hardware and software technology allows to introduce more process-specific intelligence into process information systems. Exemplified by an expert-system-aided laboratory management system as component of a NRP process information system, the paper demonstrates that these technologies can be applied already. (DG) [de

Pre-processing for Triangulation of Probabilistic Networks

NARCIS (Netherlands)

Bodlaender, H.L.; Koster, A.M.C.A.; Eijkhof, F. van den; Gaag, L.C. van der

2001-01-01

The currently most efficient algorithm for inference with a probabilistic network builds upon a triangulation of a networks graph. In this paper, we show that pre-processing can help in finding good triangulations for probabilistic networks, that is, triangulations with a minimal maximum

Digital signal processing algorithms for nuclear particle spectroscopy

International Nuclear Information System (INIS)

Zejnalova, O.; Zejnalov, Sh.; Hambsch, F.J.; Oberstedt, S.

2007-01-01

Digital signal processing algorithms for nuclear particle spectroscopy are described along with a digital pile-up elimination method applicable to equidistantly sampled detector signals pre-processed by a charge-sensitive preamplifier. The signal processing algorithms are provided as recursive one- or multi-step procedures which can be easily programmed using modern computer programming languages. The influence of the number of bits of the sampling analogue-to-digital converter on the final signal-to-noise ratio of the spectrometer is considered. Algorithms for a digital shaping-filter amplifier, for a digital pile-up elimination scheme and for ballistic deficit correction were investigated using a high purity germanium detector. The pile-up elimination method was originally developed for fission fragment spectroscopy using a Frisch-grid back-to-back double ionization chamber and was mainly intended for pile-up elimination in case of high alpha-radioactivity of the fissile target. The developed pile-up elimination method affects only the electronic noise generated by the preamplifier. Therefore the influence of the pile-up elimination scheme on the final resolution of the spectrometer is investigated in terms of the distance between pile-up pulses. The efficiency of the developed algorithms is compared with other signal processing schemes published in literature

Ion channelling analysis of pre-amorphised silicon diodes using a nuclear microprobe

International Nuclear Information System (INIS)

Thornton, J.; Paus, K.C.

1988-01-01

Aligned and random ion channelling analysis was performed on p + n diode structures in silicon, with the Surrey nuclear microprobe. Three different types of diode were investigated, each pre-amorphised by a different ion (Si + , Ge + or Sn + ) before the p + region was formed by BF 2 + implantation. The ion channelling measurements are presented and compared with previously published electrical measurements on these diodes. Relatively large residual disorder and junction leakage currents were found for the Si + pre-amorphised diodes; however, all the diodes were leaky. The results are consistent with dislocation loops within the depletion regions of the diodes causing both the residual disorder and the large leakage currents. Cross-sectional transmission electron microscopy studies support this model. (author)

Research on the quantum multistep theory for pre-equilibrium nuclear reaction

CERN Document Server

Su Zong Di; Abdurixit, A; Wang Shu Nuan; Li Bao Xian; Huang Zhong; Liu Jian Feng; Zhang Benai; Zhu Yao Yin; Li Zhi Wen

2002-01-01

The Feshbach-Kerman-Koonin (FKK) quantum multistep theory of the pre-equilibrium reaction is further improved and perfected. A unified description for the multistep compound (MSC) process of the pre-equilibrium reaction and the compound nucleus (CN) process of full equilibrium reaction can be presented. This formula can integrate MSC and CN theories with the optical model and Hauser-Feshbach formula, and can get self-consistent expression. In multistep direct (MSD) process of the pre-equilibrium reaction, the mu-step cross section can be expressed by the convolution of mu one-step cross section. And the one step cross section for continuum can be written as the product of an averaged DWBA matrix element and the state density. For calculating the multistep direct reaction cross section, two methods, the state densities and full microscopic model, are used and compared. Some typical experiments are analyzed by using the work mentioned above. The calculated results are reasonable and in good agreement with the e...

Learners’ processes during pre-task planning and Working Memory Capacity

Directory of Open Access Journals (Sweden)

Maria da Gloria Tavares

2016-01-01

Full Text Available http://dx.doi.org/10.5007/2175-8026.2016v69n1p79 The present study is part of a larger scale research (Guará-Tavares, 2011, 2013 that investigates the relationship among working memory capacity, pre-task planning, and L2 speech performance. The aim of the study was to analyze 1 what processes learners engage during pre-task planning, and 2 whether higher and lower working memory spans engage in different processes during pre-task planning. Learners’ processes were accessed by means of think aloud protocols and a retrospective interview. Working memory capacity was measured by the Speaking Span Test. Results show that learners engage mainly in organization of ideas, rehearsal, lexical searches, and monitoring.. Moreover, higher spans employ significantly more metacognitive strategies during planning when compared to lower spans.

Spatial profiling of nuclear receptor transcription patterns over the course of Drosophila development.

Science.gov (United States)

Wilk, Ronit; Hu, Jack; Krause, Henry M

2013-07-08

Previous work has shown that many of the 18 family members of Drosophila nuclear receptor transcription factors function in a temporal hierarchy to coordinate developmental progression and growth with the rate limiting process of metabolism. To gain further insight into these interactions and processes, we have undertaken a whole-family analysis of nuclear receptor mRNA spatial expression patterns over the entire process of embryogenesis, as well as the 3rd instar wandering larva stage, by using high-resolution fluorescence in situ hybridization. Overall, the patterns of expression are remarkably consistent with previously mapped spatial activity profiles documented during the same time points, with similar hot spots and temporal profiles in endocrine and metabolically important tissues. Among the more remarkable of the findings is that the majority of mRNA expression patterns observed show striking subcellular distributions, indicating potentially critical roles in the control of protein synthesis and subsequent subcellular distributions. These patterns will serve as a useful reference for future studies on the tissue-specific roles and interactions of nuclear receptor proteins, partners, cofactors and ligands.

Pre-equilibrium gamma emissions

International Nuclear Information System (INIS)

Ghosh, Sudip

1993-01-01

Together with the direct reaction and the compound nuclear emissions the pre-equilibrium (PEQ) or pre-compound processes give a fairly complete picture of nuclear reactions induced by light ions at energies of some tens of MeV. PEQ particle emissions covering the higher energy continuum spectra have been investigated in detail both experimentally and theoretically. In contrast, very little work has been done on PEQ γ- emissions. The reason is that in spite of extensive work done on PEQ particle emissions, the mechanism is not yet fully understood. Also, the PEQ γ-emission cross-sections (∼ micro barns) are very small compared to the PEQ particle emission cross-sections (∼ milli barns). Yet apart from the academic interest the understanding of PEQ γ-emissions is important for applied fusion research etc. In this paper the PEQ γ-emissions is discussed and the work done in this field is reviewed. (author). 14 refs

Random processes in nuclear reactors

CERN Document Server

Williams, M M R

1974-01-01

Random Processes in Nuclear Reactors describes the problems that a nuclear engineer may meet which involve random fluctuations and sets out in detail how they may be interpreted in terms of various models of the reactor system. Chapters set out to discuss topics on the origins of random processes and sources; the general technique to zero-power problems and bring out the basic effect of fission, and fluctuations in the lifetime of neutrons, on the measured response; the interpretation of power reactor noise; and associated problems connected with mechanical, hydraulic and thermal noise sources

A Feasibility Study of Optimal Nuclear Desalination Process for Industrial Water Supply in Korea

International Nuclear Information System (INIS)

Park, Hyunchul; Han, Kiin

2013-01-01

Seawater Desalination can be an alternative technology for water production based on salt separation from seawater. Seawater desalination can produce freshwater with necessary quality by choosing an appropriate desalination process and posttreatment methods of the product water. The commercial seawater desalination processes which are proven and reliable for large scale freshwater production are MSF and MED for evaporative desalination and RO for membrane desalination. Vapor compression plants based on thermal and mechanical compression are also employed for the small and medium capacity ranges. The aim of this study is to compare the characteristics and cost of each process methods and suggest the most efficient and effective method of desalination for an industrial water supply to the National Industrial Complex nearby Nuclear Power Plant. The costs associated with desalination depend on many factors such as capital, energy, labor, chemicals that are specific to the location, plant capacity, product salinity pre-treatment necessities, and other site-related costs for land, plant and brine disposal. A detailed analysis of each situation is thus required to estimate desalination costs. It could be stated that RO cost is lower than distillation one in energy and environmental terms. The optimal capacity(10,000 m 3 /day) was decided to analyze the estimated water usage in nuclear power plants. And then compared the availability of each process, energy consumption, O and M and economic aspects. In terms of economic feasibility study, RO is the most recommendable process in nuclear power plants in Korea

Coordinated Regulations of mRNA Synthesis and Decay during Cold Acclimation in Arabidopsis Cells.

KAUST Repository

Arae, Toshihiro

2017-04-18

Plants possess a cold acclimation system to acquire freezing tolerance through pre-exposure to non-freezing low temperatures. The transcriptional cascade of C-repeat binding factors (CBFs)/dehydration response element-binding factors (DREBs) is considered a major transcriptional regulatory pathway during cold acclimation. However, little is known regarding the functional significance of mRNA stability regulation in the response of gene expression to cold stress. The actual level of individual mRNAs is determined by a balance between mRNA synthesis and degradation. Therefore, it is important to assess the regulatory steps to increase our understanding of gene regulation. Here, we analyzed temporal changes in mRNA amounts and half-lives in response to cold stress in Arabidopsis cell cultures based on genome-wide analysis. In this mRNA decay array method, mRNA half-life measurements and microarray analyses were combined. In addition, temporal changes in the integrated value of transcription rates were estimated from the above two parameters using a mathematical approach. Our results showed that several cold-responsive genes, including Cold-regulated 15a, were relatively destabilized, whereas the mRNA amounts were increased during cold treatment by accelerating the transcription rate to overcome the destabilization. Considering the kinetics of mRNA synthesis and degradation, this apparently contradictory result supports that mRNA destabilization is advantageous for the swift increase in CBF-responsive genes in response to cold stress.

Pre-Shipment Preparations at the Savannah River Site

International Nuclear Information System (INIS)

Thomas, J.E.

2000-01-01

This paper will provide a detailed description of each of the pre-shipment process steps WSRC performs to produce the technical basis for approving the receipt and storage of spent nuclear fuel at the Savannah River Site. It is intended to be a guide to reactor operators who plan on returning ''U.S. origin'' SNF and to emphasize the need for accurate and timely completion of pre-shipment activities

Basic processes in nuclear forensics and analytical plan

International Nuclear Information System (INIS)

Venugopal, V.

2016-01-01

Nuclear forensics is the analysis of nuclear materials recovered from either the capture of unused materials, or from the radioactive debris following a nuclear explosion and can contribute significantly to the identification of the sources of the materials and the industrial processes used to obtain them. In the case of an explosion, nuclear forensics can also reconstruct key features of the nuclear device. Nuclear forensic analysis works best in conjunction with other law enforcement, radiological protection dosimetry, traditional forensics, and intelligence work to provide the basis for attributing the materials and/or nuclear device to its originators. Nuclear forensics is a piece of the overall attribution process, not a stand-alone activity

Star-PAP Control of BIK Expression and Apoptosis Is Regulated by Nuclear PIPKIα and PKCδ Signaling

Science.gov (United States)

Li, Weimin; Laishram, Rakesh S.; Ji, Zhe; Barlow, Christy A.; Tian, Bin; Anderson, Richard A.

2012-01-01

SUMMARY BIK protein is an initiator of mitochondrial apoptosis and BIK expression is induced by pro-apoptotic signals including DNA damage. Here we demonstrate that 3′-end processing and expression of BIK mRNA are controlled by the nuclear PI4,5P2-regulated poly(A) polymerase Star-PAP downstream of DNA damage. Nuclear PKCδ is a key mediator of apoptosis and DNA damage stimulates PKCδ association with the Star-PAP complex where PKCδ is required for Star-PAP-dependent BIK expression. PKCδ binds the PI4,5P2-generating enzyme PIPKIα, which is essential for PKCδ interaction with the Star-PAP complex and PKCδ activity is directly stimulated by PI4,5P2. Features in the BIK 3′-UTR uniquely define Star-PAP specificity and may block canonical PAP activity toward BIK mRNA. This reveals a nuclear phosphoinositide signaling nexus where PIPKIα, PI4,5P2 and PKCδ regulate Star-PAP control of BIK expression and induction of apoptosis. This pathway is distinct from the Star-PAP-mediated oxidative stress pathway indicating signal-specific regulation of mRNA 3′-end processing. PMID:22244330

Robot development for nuclear material processing

International Nuclear Information System (INIS)

Pedrotti, L.R.; Armantrout, G.A.; Allen, D.C.; Sievers, R.H. Sr.

1991-07-01

The Department of Energy is seeking to modernize its special nuclear material (SNM) production facilities and concurrently reduce radiation exposures and process and incidental radioactive waste generated. As part of this program, Lawrence Livermore National Laboratory (LLNL) lead team is developing and adapting generic and specific applications of commercial robotic technologies to SNM pyrochemical processing and other operations. A working gantry robot within a sealed processing glove box and a telerobot control test bed are manifestations of this effort. This paper describes the development challenges and progress in adapting processing, robotic, and nuclear safety technologies to the application. 3 figs

Quality assessment of baby food made of different pre-processed organic raw materials under industrial processing conditions.

Science.gov (United States)

Seidel, Kathrin; Kahl, Johannes; Paoletti, Flavio; Birlouez, Ines; Busscher, Nicolaas; Kretzschmar, Ursula; Särkkä-Tirkkonen, Marjo; Seljåsen, Randi; Sinesio, Fiorella; Torp, Torfinn; Baiamonte, Irene

2015-02-01

The market for processed food is rapidly growing. The industry needs methods for "processing with care" leading to high quality products in order to meet consumers' expectations. Processing influences the quality of the finished product through various factors. In carrot baby food, these are the raw material, the pre-processing and storage treatments as well as the processing conditions. In this study, a quality assessment was performed on baby food made from different pre-processed raw materials. The experiments were carried out under industrial conditions using fresh, frozen and stored organic carrots as raw material. Statistically significant differences were found for sensory attributes among the three autoclaved puree samples (e.g. overall odour F = 90.72, p processed from frozen carrots show increased moisture content and decrease of several chemical constituents. Biocrystallization identified changes between replications of the cooking. Pre-treatment of raw material has a significant influence on the final quality of the baby food.

Research on process management of nuclear power technological innovation

International Nuclear Information System (INIS)

Yang Hua; Zhou Yu

2005-01-01

Different from the other technological innovation processes, the technological innovation process of nuclear power engineering project is influenced deeply by the extensive environmental factors, the technological innovation of nuclear power engineering project needs to make an effort to reduce environmental uncertainty. This paper had described the mechanism of connection technological innovation process of nuclear power engineering project with environmental factors, and issued a feasible method based on model of bargaining to incorporate technological innovation process management of nuclear power engineering project with environmental factors. This method has realistic meanings to guide the technological innovation of nuclear power engineering project. (authors)

Is a pre-analytical process for urinalysis required?

Science.gov (United States)

Petit, Morgane; Beaudeux, Jean-Louis; Majoux, Sandrine; Hennequin, Carole

2017-10-01

For the reliable urinary measurement of calcium, phosphate and uric acid, a pre-analytical process by adding acid or base to urine samples at laboratory is recommended in order to dissolve precipitated solutes. Several studies on different kind of samples and analysers have previously shown that a such pre-analytical treatment is useless. The objective was to study the necessity of pre-analytical treatment of urine on samples collected using the V-Monovette ® (Sarstedt) system and measured on the analyser Architect C16000 (Abbott Diagnostics). Sixty urinary samples of hospitalized patients were selected (n=30 for calcium and phosphate, and n=30 for uric acid). After acidification of urine samples for measurement of calcium and phosphate, and alkalinisation for measurement of uric acid respectively, differences between results before and after the pre-analytical treatment were compared to acceptable limits recommended by the French society of clinical biology (SFBC). No difference in concentration between before and after pre-analytical treatment of urine samples exceeded acceptable limits from SFBC for measurement of calcium and uric acid. For phosphate, only one sample exceeded these acceptable limits, showing a result paradoxically lower after acidification. In conclusion, in agreement with previous study, our results show that acidification or alkalinisation of urine samples from 24 h urines or from urination is not a pre-analytical necessity for measurement of calcium, phosphate and uric acid.

Structure of Lipid Nanoparticles Containing siRNA or mRNA by Dynamic Nuclear Polarization-Enhanced NMR Spectroscopy.

Science.gov (United States)

Viger-Gravel, Jasmine; Schantz, Anna; Pinon, Arthur C; Rossini, Aaron J; Schantz, Staffan; Emsley, Lyndon

2018-02-22

Here, we show how dynamic nuclear polarization (DNP) NMR spectroscopy experiments permit the atomic level structural characterization of loaded and empty lipid nanoparticles (LNPs). The LNPs used here were synthesized by the microfluidic mixing technique and are composed of ionizable cationic lipid (DLin-MC3-DMA), a phospholipid (distearoylphosphatidylcholine, DSPC), cholesterol, and poly(ethylene glycol) (PEG) (dimyristoyl phosphatidyl ethanolamine (DMPE)-PEG 2000), as well as encapsulated cargoes that are either phosphorothioated siRNA (50 or 100%) or mRNA. We show that LNPs form physically stable complexes with bioactive drug siRNA for a period of 94 days. Relayed DNP experiments are performed to study 1 H- 1 H spin diffusion and to determine the spatial location of the various components of the LNP by studying the average enhancement factors as a function of polarization time. We observe a striking feature of LNPs in the presence and in the absence of encapsulating siRNA or mRNA by comparing our experimental results to numerical spin-diffusion modeling. We observe that LNPs form a layered structure, and we detect that DSPC and DMPE-PEG 2000 lipids form a surface rich layer in the presence (or absence) of the cargoes and that the cholesterol and ionizable cationic lipid are embedded in the core. Furthermore, relayed DNP 31 P solid-state NMR experiments allow the location of the cargo encapsulated in the LNPs to be determined. On the basis of the results, we propose a new structural model for the LNPs that features a homogeneous core with a tendency for layering of DSPC and DMPE-PEG at the surface.

How Pre-Service Teachers' Understand and Perform Science Process Skills

Science.gov (United States)

Chabalengula, Vivien Mweene; Mumba, Frackson; Mbewe, Simeon

2012-01-01

This study explored pre-service teachers' conceptual understanding and performance on science process skills. A sample comprised 91 elementary pre-service teachers at a university in the Midwest of the USA. Participants were enrolled in two science education courses; introductory science teaching methods course and advanced science methods course.…

Codon optimization of the HIV-1 vpu and vif genes stabilizes their mRNA and allows for highly efficient Rev-independent expression

International Nuclear Information System (INIS)

Nguyen, Kim-Lien; Llano, Manuel; Akari, Hirofumi; Miyagi, Eri; Poeschla, Eric M.; Strebel, Klaus; Bour, Stephan

2004-01-01

Two HIV-1 accessory proteins, Vpu and Vif, are notoriously difficult to express autonomously in the absence of the viral Tat and Rev proteins. We examined whether the codon bias observed in the vpu and vif genes relative to highly expressed human genes contributes to the Rev dependence and low expression level outside the context of the viral genome. The entire vpu gene as well as the 5' half of the vif gene were codon optimized and the resulting open reading frames (ORFs) (vphu and hvif, respectively) were cloned in autonomous expression vectors under the transcriptional control of the CMV promoter. Codon optimization efficiently removed the expression block observed in the native genes and allowed high levels of Rev- and Tat-independent expression of Vpu and Vif. Most of the higher protein levels detected are accounted for by enhanced steady-state levels of the mRNA encoding the optimized species. Nuclear run-on experiments show for the first time that codon optimization has no effect on the rate of transcriptional initiation or elongation of the vphu mRNA. Instead, optimization of the vpu gene was found to stabilize the vphu mRNA in the nucleus and enhance its export to the cytoplasm. This was achieved by allowing the optimized mRNA to use a new CRM1-independent nuclear export pathway. This work provides a better understanding of the molecular mechanisms underlying the process of codon optimization and introduces novel tools to study the biological functions of the Vpu and Vif proteins independently of other viral proteins

Pre-Processing and Modeling Tools for Bigdata

Directory of Open Access Journals (Sweden)

Hashem Hadi

2016-09-01

Full Text Available Modeling tools and operators help the user / developer to identify the processing field on the top of the sequence and to send into the computing module only the data related to the requested result. The remaining data is not relevant and it will slow down the processing. The biggest challenge nowadays is to get high quality processing results with a reduced computing time and costs. To do so, we must review the processing sequence, by adding several modeling tools. The existing processing models do not take in consideration this aspect and focus on getting high calculation performances which will increase the computing time and costs. In this paper we provide a study of the main modeling tools for BigData and a new model based on pre-processing.

Visfatin mRNA expression in human subcutaneous adipose tissue is regulated by exercise

DEFF Research Database (Denmark)

Frydelund-Larsen, Lone; Åkerström, Thorbjörn; Nielsen, Søren

2006-01-01

in abdominal subcutaneous adipose tissue and skeletal muscle biopsies obtained from healthy young men at time points 0, 3, 4.5, 6, 9, and 24 h in relation to either 3 h of ergometer cycle exercise at 60% of Vo(2 max) or rest. Adipose tissue visfatin mRNA expression increased threefold at the time points 3, 4......Visfatin [pre-beta-cell colony-enhancing factor (PBEF)] is a novel adipokine that is produced by adipose tissue, skeletal muscle, and liver and has insulin-mimetic actions. Regular exercise enhances insulin sensitivity. In the present study, we therefore examined visfatin mRNA expression.......5, and 6 h in response to exercise (n = 8) compared with preexercise samples and compared with the resting control group (n = 7, P = 0.001). Visfatin mRNA expression in skeletal muscle was not influenced by exercise. The exercise-induced increase in adipose tissue visfatin was, however, not accompanied...

Defence in depth in nuclear safety learning from 'pre-symptomatic diseases'

International Nuclear Information System (INIS)

Fukuyama, Shigeru

2011-01-01

Traditional Chinese medicine argued 'pre-symptomatic diseases', which encouraged for a physician to treat before the ailment occurred. This article described such prophylactic concept was compared to that of defense in depth in nuclear safety, which suggested encouragement of daily activities with safety awareness, preventive maintenance and appropriate treatment for incidents of aged plants would reduce or mitigate their effects. Area of safety culture was also included. Importance of human resources development for safety culture and need of establishment of database concerning new knowledge and experiences were highly recommended. In reality various slight events, whose level of the International Nuclear Event Scale (INES) were less than 2, occurred before a large accident happened to occur. Efforts to reduce events whose level of INES was less than 2 or precursor of accidents would prevent level 3 serious accidents as maximum accident of defense in depth or mitigate the extension to a larger accident. (T. Tanaka)

[Variation of water DOC during the process of pre-pressure and coagulation sedimentation treatment].

Science.gov (United States)

Chen, Wen-Jing; Cong, Hai-Bing; Xu, Ya-Jun; Wang, Wei; Jiang, Xin-Yue; Liu, Yu-Jiao

2014-07-01

The aim of the study was to explore whether the pre-pressure and coagulation sedimentation process would result in algal cell disruption, leading to increased dissolved organic carbon (DOC) in water, based on which, the pressure application mode would be optimized and safe and efficient pre-pressure algae removal process would be obtained. The changes in DOC during the process of pre-pressure and preoxidation treatment, the distribution of molecular weight in water as well as the removal efficiency of algae, turbidity and DOC after coagulation and sedimentation were investigated. The results showed that the DOC in water did not increase but decreased, and the molecular weight decreased after treated with 0.5-0.8 MPa pressure. While KMnO4 and NaClO pre-oxidation both increased the DOC, in the meanwhile, the distribution of molecular weight showed no obvious change. After the pre-pressure coagulation and sedimentation process, the removal rate of algae was 96.23% and that of DOC was 29. 11%, which was by 10% - 30% higher than the rate of pre-oxidation coagulation and sedimentation process.

Oil shales and the nuclear process heat

International Nuclear Information System (INIS)

Scarpinella, C.A.

1974-01-01

Two of the primary energy sources most dited as alternatives to the traditional fossil fuels are oil shales and nuclear energy. Several proposed processes for the extraction and utilization of oil and gas from shale are given. Possible efficient ways in which nuclear heat may be used in these processes are discussed [pt

Nuclear energy and process heating

Energy Technology Data Exchange (ETDEWEB)

Kozier, K.S

1999-10-01

Nuclear energy generated in fission reactors is a versatile commodity that can, in principle, satisfy any and all of mankind's energy needs through direct or indirect means. In addition to its dominant current use for electricity generation and, to a lesser degree, marine propulsion, nuclear energy can and has been used for process heat applications, such as space heating, industrial process heating and seawater desalination. Moreover, a wide variety of reactor designs has been employed to this end in a range of countries. From this spectrum of experience, two design approaches emerge for nuclear process heating (NPH): extracting a portion of the thermal energy from a nuclear power plant (NPP) (i.e., creating a combined heat and power, or CHP, plant) and transporting it to the user, or deploying dedicated nuclear heating plants (NHPs) in generally closer proximity to the thermal load. While the former approach is the basis for much of the current NPH experience, considerable recent interest exists for the latter, typically involving small, innovative reactor plants with enhanced and passive safety features. The high emphasis on inherent nuclear safety characteristics in these reactor designs reflects the need to avoid any requirement for evacuation of the public in the event of an accident, and the desire for sustained operation and investment protection at minimum cost. Since roughly 67% of mankind's primary energy usage is not in the form of electricity, a vast potential market for NPH systems exists, particularly at the low-to-moderate end-use temperatures required for residential space heating and several industrial applications. Although only About 0.5% of global nuclear energy production is presently used for NPH applications, an expanded role in the 21st century seems inevitable, in part, as a measure to reduce greenhouse gas emissions and improve air quality. While the technical aspects of many NPH applications are considered to be well proven, a

Nuclear energy and process heating

International Nuclear Information System (INIS)

Kozier, K.S.

1999-10-01

Nuclear energy generated in fission reactors is a versatile commodity that can, in principle, satisfy any and all of mankind's energy needs through direct or indirect means. In addition to its dominant current use for electricity generation and, to a lesser degree, marine propulsion, nuclear energy can and has been used for process heat applications, such as space heating, industrial process heating and seawater desalination. Moreover, a wide variety of reactor designs has been employed to this end in a range of countries. From this spectrum of experience, two design approaches emerge for nuclear process heating (NPH): extracting a portion of the thermal energy from a nuclear power plant (NPP) (i.e., creating a combined heat and power, or CHP, plant) and transporting it to the user, or deploying dedicated nuclear heating plants (NHPs) in generally closer proximity to the thermal load. While the former approach is the basis for much of the current NPH experience, considerable recent interest exists for the latter, typically involving small, innovative reactor plants with enhanced and passive safety features. The high emphasis on inherent nuclear safety characteristics in these reactor designs reflects the need to avoid any requirement for evacuation of the public in the event of an accident, and the desire for sustained operation and investment protection at minimum cost. Since roughly 67% of mankind's primary energy usage is not in the form of electricity, a vast potential market for NPH systems exists, particularly at the low-to-moderate end-use temperatures required for residential space heating and several industrial applications. Although only About 0.5% of global nuclear energy production is presently used for NPH applications, an expanded role in the 21st century seems inevitable, in part, as a measure to reduce greenhouse gas emissions and improve air quality. While the technical aspects of many NPH applications are considered to be well proven, a determined

Physical change in cytoplasmic messenger ribonucleoproteins in cells treated with inhibitors of mRNA transcription

International Nuclear Information System (INIS)

Dreyfuss, G.; Adam, S.A.; Choi, Y.D.

1984-01-01

Exposure of intact cells to UV light brings about cross-linking of polyadenylated mRNA to a set of cytoplasmic proteins which are in direct contact with the mRNA in vivo. Substantial amounts of an additional protein of molecular weight 38,000 become cross-linked to the mRNA when cells are treated with inhibitors of mRNA synthesis (actinomycin D, camptothecin, and 5,6-dichloro-1-beta-D-ribofuranosyl benzimidazole) or after infection with vesicular stomatitis virus. Cordycepin, which inhibits polyadenylation but not mRNA synthesis, has no such effect. Inhibitors of protein synthesis and of rRNA synthesis are also without effect on 38K cross-linking to mRNA. The onset of the effect of inhibitors of mRNA synthesis on the UV cross-linkable interaction between mRNA and 38K is rapid and reaches a maximal level in less than 60 min, and it is completely and rapidly reversible. In cells treated with actinomycin D, the amount of 38K which becomes cross-linked to mRNA is proportional to the extent of inhibition of mRNA synthesis. The association of 38K with mRNA during transcriptional arrest does not require protein synthesis because simultaneous treatment with the protein synthesis inhibitor emetine does not interfere with it. The effectors which promote the interaction of 38K with mRNA do not affect the proteins which are in contact with polyadenylated heterogeneous nuclear RNA and do not markedly affect protein synthesis in the cell. The 38K protein can be isolated with the polyribosomal polyadenylated fraction from which it was purified, and monoclonal antibodies against it were prepared

The evolving image and role of the regulator for implementing repositories for nuclear waste and spent nuclear fuel

International Nuclear Information System (INIS)

Melin, J.

2005-01-01

A country introducing nuclear power in their energy strategy has a life long obligation. The obligation is not mainly a question of energy production. It is an obligation to maintain safety during the phase of construction, energy production and decommissioning as well as to take care of all the waste streams from nuclear installations. I believe that one of the most controversial siting projects in the society is a waste repository for spent nuclear fuel. Competence, available funds and a clear responsibility between the stakeholders as well as the trust of the public is indispensable to obtain a good result. The Swedish programme for managing nuclear waste and spent nuclear fuel has been in progress for more than 25 years. The pre-licensing process of a repository for spent nuclear fuel is much alike a pre-licensing process for the first nuclear power plant in a country. You need a clear political will, you have to involve the nuclear regulator without jeopardizing his integrity and you need the money to perform research and make the investments. The enthusiasm of politicians and industry may however differ between these two projects. (author)

Expression of calmodulin mRNA in rat olfactory neuroepithelium.

Science.gov (United States)

Biffo, S; Goren, T; Khew-Goodall, Y S; Miara, J; Margolis, F L

1991-04-01

A calmodulin (CaM) cDNA was isolated by differential hybridization screening of a lambda gt10 library prepared from rat olfactory mucosa. This cDNA fragment, containing most of the open reading frame of the rat CaMI gene, was subcloned and used to characterize steady-state expression of CaM mRNA in rat olfactory neuroepithelium and bulb. Within the bulb mitral cells are the primary neuronal population expressing CaM mRNA. The major CaM mRNA expressed in the olfactory mucosa is 1.7 kb with smaller contributions from mRNAs of 4.0 and 1.4 kb. CaM mRNA was primarily associated with the olfactory neurons and, despite the cellular complexity of the tissue and the known involvement of CaM in diverse cellular processes, was only minimally evident in sustentacular cells, gland cells or respiratory epithelium. Following bulbectomy CaM mRNA declines in the olfactory neuroepithelium as does olfactory marker protein (OMP) mRNA. In contrast to the latter, CaM mRNA makes a partial recovery by one month after surgery. These results, coupled with those from in situ hybridization, indicate that CaM mRNA is expressed in both mature and immature olfactory neurons. The program regulating CaM gene expression in olfactory neurons is distinct from those controlling expression of B50/GAP43 in immature, or OMP in mature, neurons respectively.

Consequences of daily corticosteroid dosing with or without pre-treatment with quinidine on the in vivo cytochrome P450 2D (CYP2D) enzyme in rats: effect on O-demethylation activity of dextromethorphan and expression levels of CYP2D1 mRNA.

Science.gov (United States)

Giri, Poonam; Delvadia, Prashant; Gupta, Laxmikant; Patel, Nirmal; Trivedi, Priyal; Lad, Krishna; Patel, Hiren M; Srinivas, Nuggehally R

2018-01-01

1. Present investigation was carried out in rats to study influence of corticosteroids after repeated dosing with/without pre-treatment with CYP2D inhibitor quinidine on the CYP2D1 mRNA levels and CYP2D enzyme activity using dextromethorphan as probe substrate. 2. CYP2D1 mRNA was measured in liver homogenate using quantitative real-time polymerase chain reaction [qRT-PCR] and enzymatic reaction was studied ex vivo in liver S-9 fractions of rats treated with oral 10 mg/kg dexamethasone or prednisolone for five days or pre-treated with quinidine and followed by treatment with oral 10 mg/kg corticosteroids for five days. 3. Five days repeat dosing of dexamethasone or prednisolone decreased the activity of the rat liver CYP2D by 37% and 34%, at 30 min incubation and decreased CYP2D1 mRNA levels by 62% and 61%, respectively. 4. Pre-treatment of quinidine decreased the enzymatic activity of rat CYP2D by 58% and did not potentiate CYP2D inhibition by corticosteroids. This observation was further complemented by qRT-PCR data. 5. Corticosteroids caused CYP2D inhibition in rats vs. literature evidence of CYP2D induction in human hepatocytes/pregnant humans demonstrating lack of concordance. In vivo inhibition should be factored for interpretation of pharmacokinetic data of CYP2D substrates when treated with corticosteroids in rats.

The involvement of mRNA processing factors TIA-1, TIAR, and PABP-1 during mammalian hibernation.

Science.gov (United States)

Tessier, Shannon N; Audas, Timothy E; Wu, Cheng-Wei; Lee, Stephen; Storey, Kenneth B

2014-11-01

Mammalian hibernators survive low body temperatures, ischemia-reperfusion, and restricted nutritional resources via global reductions in energy-expensive cellular processes and selective increases in stress pathways. Consequently, studies that analyze hibernation uncover mechanisms which balance metabolism and support survival by enhancing stress tolerance. We hypothesized processing factors that influence messenger ribonucleic acid (mRNA) maturation and translation may play significant roles in hibernation. We characterized the amino acid sequences of three RNA processing proteins (T cell intracellular antigen 1 (TIA-1), TIA1-related (TIAR), and poly(A)-binding proteins (PABP-1)) from thirteen-lined ground squirrels (Ictidomys tridecemlineatus), which all displayed a high degree of sequence identity with other mammals. Alternate Tia-1 and TiaR gene variants were found in the liver with higher expression of isoform b versus a in both cases. The localization of RNA-binding proteins to subnuclear structures was assessed by immunohistochemistry and confirmed by subcellular fractionation; TIA-1 was identified as a major component of subnuclear structures with up to a sevenfold increase in relative protein levels in the nucleus during hibernation. By contrast, there was no significant difference in the relative protein levels of TIARa/TIARb in the nucleus, and a decrease was observed for TIAR isoforms in cytoplasmic fractions of torpid animals. Finally, we used solubility tests to analyze the formation of reversible aggregates that are associated with TIA-1/R function during stress; a shift towards the soluble fraction (TIA-1a, TIA-1b) was observed during hibernation suggesting enhanced protein aggregation was not present during torpor. The present study identifies novel posttranscriptional regulatory mechanisms that may play a role in reducing translational rates and/or mRNA processing under unfavorable environmental conditions.

Role of ion chromatograph in nuclear fuel fabrication process at Nuclear Fuel Complex

International Nuclear Information System (INIS)

Balaji Rao, Y.; Prasada Rao, G.; Prahlad, B.; Saibaba, N.

2012-01-01

The present paper discusses the different applications of ion chromatography followed in nuclear fuel fabrication process at Nuclear Fuel Complex. Some more applications of IC for characterization of nuclear materials and which are at different stages of method development at Control Laboratory, Nuclear Fuel Complex are also highlighted

An adaptive deep-coupled GNSS/INS navigation system with hybrid pre-filter processing

Science.gov (United States)

Wu, Mouyan; Ding, Jicheng; Zhao, Lin; Kang, Yingyao; Luo, Zhibin

2018-02-01

The deep-coupling of a global navigation satellite system (GNSS) with an inertial navigation system (INS) can provide accurate and reliable navigation information. There are several kinds of deeply-coupled structures. These can be divided mainly into coherent and non-coherent pre-filter based structures, which have their own strong advantages and disadvantages, especially in accuracy and robustness. In this paper, the existing pre-filters of the deeply-coupled structures are analyzed and modified to improve them firstly. Then, an adaptive GNSS/INS deeply-coupled algorithm with hybrid pre-filters processing is proposed to combine the advantages of coherent and non-coherent structures. An adaptive hysteresis controller is designed to implement the hybrid pre-filters processing strategy. The simulation and vehicle test results show that the adaptive deeply-coupled algorithm with hybrid pre-filters processing can effectively improve navigation accuracy and robustness, especially in a GNSS-challenged environment.

Method for processing spent nuclear reactor fuel

International Nuclear Information System (INIS)

Levenson, M.; Zebroski, E.L.

1981-01-01

A method and apparatus are claimed for processing spent nuclear reactor fuel wherein plutonium is continuously contaminated with radioactive fission products and diluted with uranium. Plutonium of sufficient purity to fabricate nuclear weapons cannot be produced by the process or in the disclosed reprocessing plant. Diversion of plutonium is prevented by radiation hazards and ease of detection

Application control chart concepts of designing a pre-alarm system in the nuclear power plant control room

International Nuclear Information System (INIS)

Hwang, S.-L.; Lin, J.-T.; Liang, G.-F.; Yau, Y.-J.; Yenn, T.-C.; Hsu, C.-C.

2008-01-01

This study applied the concepts of the Shewhart control chart to design a pre-alarm system for the nuclear power plant control room. As a support in detecting faults, the pre-alarm system reminded the operators of a change in the system state in its early stages. Two pre-alarm types were designed to compare with the original system, and all participants were requested to monitor each simulated system under both normal and abnormal states. The tasks for the participants included shutting down the reactor, searching for procedures, monitoring system parameters and executing secondary tasks. In each trial, the task performance, mental workload and situation awareness (SA) of the participants were measured. Results indicated that participants had lower mental workload, but equal SA, when monitoring the system with either type of pre-alarm designs, and lower alarm frequency and higher secondary task performance were obtained with the pre-alarm design. Therefore, the pre-alarm system effectively assisted the operators in monitoring tasks

KASAM project for detailed study of the decision making process and basis for decisions in the nuclear waste area

International Nuclear Information System (INIS)

Hedberg, Bjoern

2008-01-01

The idea of the transparency programme is that it should increase the transparency, and thereby the quality, of the decision process and the document basis for the up coming decisions related to the SKB (Swedish Nuclear Fuel and Waste Management Company) license applications for a final repository for high level nuclear waste and an encapsulation plant for spent nuclear fuel. KASAM (Swedish National Council for Nuclear Waste) was in charge of the transparency program. The pre-study proposes that KASAM uses the RISCOM-model to support the transparency programme. During the pre-study a number of stakeholders were approached to give their views about the format and contents of the transparency programme and a large number of new issues were raised that could be included in transparency creating activities. Among these issues we got for instance: the role of responsible authorities, on what basis for site selection? or socio-economic issues or critical assumptions in the safety assessment or safety philosophy. Recurrent elements in the transparency programme would then be: -) a clear description of the background for the issue being addressed, -) knowledge building activities, and -) a hearing where the KASAM committee members and staff meet the stakeholders to discuss the issue

Video image processing for nuclear safeguards

International Nuclear Information System (INIS)

Rodriguez, C.A.; Howell, J.A.; Menlove, H.O.; Brislawn, C.M.; Bradley, J.N.; Chare, P.; Gorten, J.

1995-01-01

The field of nuclear safeguards has received increasing amounts of public attention since the events of the Iraq-UN conflict over Kuwait, the dismantlement of the former Soviet Union, and more recently, the North Korean resistance to nuclear facility inspections by the International Atomic Energy Agency (IAEA). The role of nuclear safeguards in these and other events relating to the world's nuclear material inventory is to assure safekeeping of these materials and to verify the inventory and use of nuclear materials as reported by states that have signed the nuclear Nonproliferation Treaty throughout the world. Nuclear safeguards are measures prescribed by domestic and international regulatory bodies such as DOE, NRC, IAEA, and EURATOM and implemented by the nuclear facility or the regulatory body. These measures include destructive and non destructive analysis of product materials/process by-products for materials control and accountancy purposes, physical protection for domestic safeguards, and containment and surveillance for international safeguards

mRNA: From a chemical blueprint for protein production to an off-the-shelf therapeutic.

Science.gov (United States)

Van Lint, Sandra; Heirman, Carlo; Thielemans, Kris; Breckpot, Karine

2013-02-01

Two decades ago, mRNA became the focus of research in molecular medicine and was proposed as an active pharmaceutical ingredient for the therapy of cancer. In this regard, mRNA has been mainly used for ex vivo modification of antigen-presenting cells (APCs), such as dendritic cells (DCs). This vaccination strategy has proven to be safe, well tolerated and capable of inducing tumor antigen-specific immune responses. Recently, the direct application of mRNA for in situ modification of APCs, hence immunization was shown to be feasible and at least as effective as DC-based immunization in pre-clinical models. It is believed that application of mRNA as an off-the-shelf vaccine represents an important step in the development of future cancer immunotherapeutic strategies. Here, we will discuss the use of ex vivo mRNA-modified DCs and "naked mRNA" for cancer immunotherapy focusing on parameters such as the employed DC subtype, DC activation stimulus and route of immunization. In addition, we will provide an overview on the clinical trials published so far, trying to link their outcome to the aforementioned parameters.

Nuclear data newsletter. No. 5

International Nuclear Information System (INIS)

1983-05-01

This issue lists the new nuclear data libraries received by the IAEA Nuclear Data Section: ENDL-98; ACTL-82; ECPL-82; ENDF/B-4; IAEA Evaluated Neutron data Library (INDL); INDL/F-83; and the data handling pre-processing codes. It announces available charts of nuclides and also lists a selection of new relevant documents

Statins Activate Human PPAR Promoter and Increase PPAR mRNA Expression and Activation in HepG2 Cells

Directory of Open Access Journals (Sweden)

Makoto Seo

2008-01-01

Full Text Available Statins increase peroxisome proliferator-activated receptor (PPAR mRNA expression, but the mechanism of this increased PPAR production remains elusive. To examine the regulation of PPAR production, we examined the effect of 7 statins (atorvastatin, cerivastatin, fluvastatin, pitavastatin, pravastatin, rosuvastatin, and simvastatin on human PPAR promoter activity, mRNA expression, nuclear protein levels, and transcriptional activity. The main results are as follows. (1 Majority of statins enhanced PPAR promoter activity in a dose-dependent manner in HepG2 cells transfected with the human PPAR promoter. This enhancement may be mediated by statin-induced HNF-4. (2 PPAR mRNA expression was increased by statin treatment. (3 The PPAR levels in nuclear fractions were increased by statin treatment. (4 Simvastatin, pravastatin, and cerivastatin markedly enhanced transcriptional activity in 293T cells cotransfected with acyl-coenzyme A oxidase promoter and PPAR/RXR expression vectors. In summary, these data demonstrate that PPAR production and activation are upregulated through the PPAR promoter activity by statin treatment.

An operational approach to standard nuclear process model (SNPM) and SAP nuclear software implementation at Slovenske Elektrarne

International Nuclear Information System (INIS)

Warren, C.C.

2010-01-01

Benchmarking efforts in the fall of 2006 showed significant performance gaps in multiple measured processes between the Slovenske Elektrarne (SE) nuclear organization and the highest performing nuclear organizations in the world. While overall performance of the SE nuclear fleet was good and in the second quartile, when compared to the worldwide population of Pressurized Water Reactors (PWR), SE leadership set new goals to improve safety and operational performance to the first decile of the worldwide PWR Fleet. To meet these goals the SE nuclear team initiated a project to identify and implement the Best Practice nuclear processes in multiple areas. The benchmarking process identified the Standard Nuclear Performance Model (SNPM), used in the US nuclear fleet, as the industry best practice process model. The Slovenske Elektrarne nuclear management team used various change management techniques to clearly establish the case for organizational and process change within the nuclear organization. The project organization established by the SE nuclear management team relied heavily on functional line organization personnel to gain early acceptance of the project goals and methods thereby reducing organizational opposition to the significant organizational and process changes. The choice of a standardized process model used, all or in part, by approximately one third of the nuclear industry worldwide greatly facilitated the development and acceptance of the changes. Use of a nuclear proven templated software platform significantly reduced development and testing efforts for the resulting fully integrated solution. In the spring of 2007 SE set in motion a set of initiatives that has resulted in a significant redesign of most processes related to nuclear plant maintenance and continuous improvement. Significant organizational structure changes have been designed and implemented to align the organization to the SNPM processes and programs. The completion of the initial

An operational approach to standard nuclear process model (SNPM) and SAP nuclear software implementation at Slovenske Elektrarne

Energy Technology Data Exchange (ETDEWEB)

Warren, C.C. [Nuclear Power Plants Operation Department, Slovenske Elektrarne, a.s., Mlynske nivy 47, 821 09 Bratislava (Slovakia)

2010-07-01

Benchmarking efforts in the fall of 2006 showed significant performance gaps in multiple measured processes between the Slovenske Elektrarne (SE) nuclear organization and the highest performing nuclear organizations in the world. While overall performance of the SE nuclear fleet was good and in the second quartile, when compared to the worldwide population of Pressurized Water Reactors (PWR), SE leadership set new goals to improve safety and operational performance to the first decile of the worldwide PWR Fleet. To meet these goals the SE nuclear team initiated a project to identify and implement the Best Practice nuclear processes in multiple areas. The benchmarking process identified the Standard Nuclear Performance Model (SNPM), used in the US nuclear fleet, as the industry best practice process model. The Slovenske Elektrarne nuclear management team used various change management techniques to clearly establish the case for organizational and process change within the nuclear organization. The project organization established by the SE nuclear management team relied heavily on functional line organization personnel to gain early acceptance of the project goals and methods thereby reducing organizational opposition to the significant organizational and process changes. The choice of a standardized process model used, all or in part, by approximately one third of the nuclear industry worldwide greatly facilitated the development and acceptance of the changes. Use of a nuclear proven templated software platform significantly reduced development and testing efforts for the resulting fully integrated solution. In the spring of 2007 SE set in motion a set of initiatives that has resulted in a significant redesign of most processes related to nuclear plant maintenance and continuous improvement. Significant organizational structure changes have been designed and implemented to align the organization to the SNPM processes and programs. The completion of the initial

The r-process nucleosynthesis: Nuclear physics challenges

Energy Technology Data Exchange (ETDEWEB)

Goriely, S. [Institut d' Astronomie et d' Astrophysique, Universite Libre de Bruxelles Campus de la Plaine, CP 226, 1050 Brussels (Belgium)

2012-10-20

About half of the nuclei heavier than iron observed in nature are produced by the socalled rapid neutron capture process, or r-process, of nucleosynthesis. The identification of the astrophysics site and the specific conditions in which the r-process takes place remains, however, one of the still-unsolved mysteries of modern astrophysics. Another underlying difficulty associated with our understanding of the r-process concerns the uncertainties in the predictions of nuclear properties for the few thousands exotic neutron-rich nuclei involved and for which essentially no experimental data exist. The present contribution emphasizes some important future challenges faced by nuclear physics in this problem, particularly in the determination of the nuclear structure properties of exotic neutron-rich nuclei as well as their radiative neutron capture rates and their fission probabilities. These quantities are particularly relevant to determine the composition of the matter resulting from the r-process. Their impact on the r-abundance distribution resulting from the decompression of neutron star matter is discussed.

hnRNP A2/B1 interacts with influenza A viral protein NS1 and inhibits virus replication potentially through suppressing NS1 RNA/protein levels and NS1 mRNA nuclear export

Energy Technology Data Exchange (ETDEWEB)

Wang, Yimeng; Zhou, Jianhong; Du, Yuchun, E-mail: ydu@uark.edu

2014-01-20

The NS1 protein of influenza viruses is a major virulence factor and exerts its function through interacting with viral/cellular RNAs and proteins. In this study, we identified heterogeneous nuclear ribonucleoprotein A2/B1 (hnRNP A2/B1) as an interacting partner of NS1 proteins by a proteomic method. Knockdown of hnRNP A2/B1 by small interfering RNA (siRNA) resulted in higher levels of NS vRNA, NS1 mRNA, and NS1 protein in the virus-infected cells. In addition, we demonstrated that hnRNP A2/B1 proteins are associated with NS1 and NS2 mRNAs and that knockdown of hnRNP A2/B1 promotes transport of NS1 mRNA from the nucleus to the cytoplasm in the infected cells. Lastly, we showed that knockdown of hnRNP A2/B1 leads to enhanced virus replication. Our results suggest that hnRNP A2/B1 plays an inhibitory role in the replication of influenza A virus in host cells potentially through suppressing NS1 RNA/protein levels and NS1 mRNA nucleocytoplasmic translocation. - Highlights: • Cellular protein hnRNP A2/B1 interacts with influenza viral protein NS1. • hnRNP A2/B1 suppresses the levels of NS1 protein, vRNA and mRNA in infected cells. • hnRNP A2/B1 protein is associated with NS1 and NS2 mRNAs. • hnRNP A2/B1 inhibits the nuclear export of NS1 mRNAs. • hnRNP A2/B1 inhibits influenza virus replication.

Pre-processing by data augmentation for improved ellipse fitting.

Science.gov (United States)

Kumar, Pankaj; Belchamber, Erika R; Miklavcic, Stanley J

2018-01-01

Ellipse fitting is a highly researched and mature topic. Surprisingly, however, no existing method has thus far considered the data point eccentricity in its ellipse fitting procedure. Here, we introduce the concept of eccentricity of a data point, in analogy with the idea of ellipse eccentricity. We then show empirically that, irrespective of ellipse fitting method used, the root mean square error (RMSE) of a fit increases with the eccentricity of the data point set. The main contribution of the paper is based on the hypothesis that if the data point set were pre-processed to strategically add additional data points in regions of high eccentricity, then the quality of a fit could be improved. Conditional validity of this hypothesis is demonstrated mathematically using a model scenario. Based on this confirmation we propose an algorithm that pre-processes the data so that data points with high eccentricity are replicated. The improvement of ellipse fitting is then demonstrated empirically in real-world application of 3D reconstruction of a plant root system for phenotypic analysis. The degree of improvement for different underlying ellipse fitting methods as a function of data noise level is also analysed. We show that almost every method tested, irrespective of whether it minimizes algebraic error or geometric error, shows improvement in the fit following data augmentation using the proposed pre-processing algorithm.

Whole-genome analysis of mRNA decay in Plasmodium falciparum reveals a global lengthening of mRNA half-life during the intra-erythrocytic development cycle.

Science.gov (United States)

Shock, Jennifer L; Fischer, Kael F; DeRisi, Joseph L

2007-01-01

The rate of mRNA decay is an essential element of post-transcriptional regulation in all organisms. Previously, studies in several organisms found that the specific half-life of each mRNA is precisely related to its physiologic role, and plays an important role in determining levels of gene expression. We used a genome-wide approach to characterize mRNA decay in Plasmodium falciparum. We found that, globally, rates of mRNA decay increase dramatically during the asexual intra-erythrocytic developmental cycle. During the ring stage of the cycle, the average mRNA half-life was 9.5 min, but this was extended to an average of 65 min during the late schizont stage of development. Thus, a major determinant of mRNA decay rate appears to be linked to the stage of intra-erythrocytic development. Furthermore, we found specific variations in decay patterns superimposed upon the dominant trend of progressive half-life lengthening. These variations in decay pattern were frequently enriched for genes with specific cellular functions or processes. Elucidation of Plasmodium mRNA decay rates provides a key element for deciphering mechanisms of genetic control in this parasite, by complementing and extending previous mRNA abundance studies. Our results indicate that progressive stage-dependent decreases in mRNA decay rate function are a major determinant of mRNA accumulation during the schizont stage of intra-erythrocytic development. This type of genome-wide change in mRNA decay rate has not been observed in any other organism to date, and indicates that post-transcriptional regulation may be the dominant mechanism of gene regulation in P. falciparum.

Endurance exercise induces mRNA expression of oxidative enzymes in human skeletal muscle late in recovery

DEFF Research Database (Denmark)

Leick, Lotte; Plomgaard, Peter S.; Grønløkke, L.

2010-01-01

exercise. To test the hypothesis that mRNA expression of many oxidative enzymes is up-regulated late in recovery (10-24 h) after exercise, male subjects (n=8) performed a 90-min cycling exercise (70% VO(2-max)), with muscle biopsies obtained before exercise (pre), and after 10, 18 and 24 h of recovery....... The mRNA expression of carnitine-palmitoyltransferase (CPT)I, CD36, 3-hydroxyacyl-CoA-dehydrogenase (HAD), cytochrome (Cyt)c, aminolevulinate-delta-synthase (ALAS)1 and GLUT4 was 100-200% higher at 10-24 h of recovery from exercise than in a control trial. Exercise induced a 100-300% increase...... in peroxisome proliferator-activated receptor gamma co-activator (PGC)-1alpha, citrate synthase (CS), CPTI, CD36, HAD and ALAS1 mRNA contents at 10-24 h of recovery relative to before exercise. No protein changes were detected in Cytc, ALAS1 or GLUT4. This shows that mRNA expression of several training...

Automated processing of nuclear materials accounting data

International Nuclear Information System (INIS)

Straka, J.; Pacak, P.; Moravec, J.

1980-01-01

An automated system was developed of nuclear materials accounting in Czechoslovakia. The system allows automating data processing including data storage. It comprises keeping records of inventories and material balance. In designing the system, the aim of the IAEA was taken into consideration, ie., building a unified information system interconnected with state-run systems of accounting and checking nuclear materials in the signatory countries of the non-proliferation treaty. The nuclear materials accounting programs were written in PL-1 and were tested at an EC 1040 computer at UJV Rez where also the routine data processing takes place. (B.S.)

Development of processes for the utilization of Brazilian coal using nuclear process heat and/or nuclear process steam

International Nuclear Information System (INIS)

Bamert, H.; Niessen, H.F.; Walbeck, M.; Wasrzik, U.; Mueller, R.; Schiffers, U.; Strauss, W.

1980-01-01

Status of the project: End of the project definition phase and preparation of the planned conceptual phase. Objective of the project: Development of processes for the utilization of nuclear process heat and/or nuclear process steam for the gasification of coal with high ash content, in particular coal from Brazil. Results: With the data of Brazilian coal of high ash content (mine Leao/ 43% ash in the mine-mouth quality, 20% ash after preparation) there have been worked out proposals for the mine planning and for a number of processes. On the basis of these proposals and under consideration of the main data specified by the Brazilian working group there have been choosen two processes and worked out in a conceptual design: 1) pressurized water reactor + LURGI-pressure gasifier/hydrogasification for the production of SNG and 2) high temperature reactor steam gasification for the production of town gas. The economic evaluation showed that the two processes are not substantially different in their cost efficiency and they are economical on a long-term basis. For more specific design work there has been planned the implementation of an experimental programme using the semi-technical plants 'hydrogasification' in Wesseling and 'steam gasification' in Essen as the conceptual phase. (orig.) [de

Classification-based comparison of pre-processing methods for interpretation of mass spectrometry generated clinical datasets

Directory of Open Access Journals (Sweden)

Hoefsloot Huub CJ

2009-05-01

Full Text Available Abstract Background Mass spectrometry is increasingly being used to discover proteins or protein profiles associated with disease. Experimental design of mass-spectrometry studies has come under close scrutiny and the importance of strict protocols for sample collection is now understood. However, the question of how best to process the large quantities of data generated is still unanswered. Main challenges for the analysis are the choice of proper pre-processing and classification methods. While these two issues have been investigated in isolation, we propose to use the classification of patient samples as a clinically relevant benchmark for the evaluation of pre-processing methods. Results Two in-house generated clinical SELDI-TOF MS datasets are used in this study as an example of high throughput mass-spectrometry data. We perform a systematic comparison of two commonly used pre-processing methods as implemented in Ciphergen ProteinChip Software and in the Cromwell package. With respect to reproducibility, Ciphergen and Cromwell pre-processing are largely comparable. We find that the overlap between peaks detected by either Ciphergen ProteinChip Software or Cromwell is large. This is especially the case for the more stringent peak detection settings. Moreover, similarity of the estimated intensities between matched peaks is high. We evaluate the pre-processing methods using five different classification methods. Classification is done in a double cross-validation protocol using repeated random sampling to obtain an unbiased estimate of classification accuracy. No pre-processing method significantly outperforms the other for all peak detection settings evaluated. Conclusion We use classification of patient samples as a clinically relevant benchmark for the evaluation of pre-processing methods. Both pre-processing methods lead to similar classification results on an ovarian cancer and a Gaucher disease dataset. However, the settings for pre-processing

Selective catalytic reduction system and process using a pre-sulfated zirconia binder

Science.gov (United States)

Sobolevskiy, Anatoly; Rossin, Joseph A.

2010-06-29

A selective catalytic reduction (SCR) process with a palladium catalyst for reducing NOx in a gas, using hydrogen as a reducing agent is provided. The process comprises contacting the gas stream with a catalyst system, the catalyst system comprising (ZrO.sub.2)SO.sub.4, palladium, and a pre-sulfated zirconia binder. The inclusion of a pre-sulfated zirconia binder substantially increases the durability of a Pd-based SCR catalyst system. A system for implementing the disclosed process is further provided.

RNA-Binding Proteins Revisited – The Emerging Arabidopsis mRNA Interactome

KAUST Repository

Köster, Tino

2017-04-13

RNA–protein interaction is an important checkpoint to tune gene expression at the RNA level. Global identification of proteins binding in vivo to mRNA has been possible through interactome capture – where proteins are fixed to target RNAs by UV crosslinking and purified through affinity capture of polyadenylated RNA. In Arabidopsis over 500 RNA-binding proteins (RBPs) enriched in UV-crosslinked samples have been identified. As in mammals and yeast, the mRNA interactomes came with a few surprises. For example, a plethora of the proteins caught on RNA had not previously been linked to RNA-mediated processes, for example proteins of intermediary metabolism. Thus, the studies provide unprecedented insights into the composition of the mRNA interactome, highlighting the complexity of RNA-mediated processes.

RNA-Binding Proteins Revisited – The Emerging Arabidopsis mRNA Interactome

KAUST Repository

Kö ster, Tino; Marondedze, Claudius; Meyer, Katja; Staiger, Dorothee

2017-01-01

RNA–protein interaction is an important checkpoint to tune gene expression at the RNA level. Global identification of proteins binding in vivo to mRNA has been possible through interactome capture – where proteins are fixed to target RNAs by UV crosslinking and purified through affinity capture of polyadenylated RNA. In Arabidopsis over 500 RNA-binding proteins (RBPs) enriched in UV-crosslinked samples have been identified. As in mammals and yeast, the mRNA interactomes came with a few surprises. For example, a plethora of the proteins caught on RNA had not previously been linked to RNA-mediated processes, for example proteins of intermediary metabolism. Thus, the studies provide unprecedented insights into the composition of the mRNA interactome, highlighting the complexity of RNA-mediated processes.

Membrane processes in nuclear technologies

International Nuclear Information System (INIS)

Zakrzewska-Trznadel, G.

2006-01-01

The treatment of radioactive wastes is necessary taking into account the potential hazard of radioactive substances to human health and surrounding environment. The choice of appropriate technology depends on capital and operational costs, wastes amount and their characteristics, appointed targets of the process, e.g. the values of decontamination factors and volume reduction coefficients. The conventional technologies applied for radioactive waste processing, such as precipitation coupled with sedimentation, ion exchange and evaporation have many drawbacks. These include high energy consumption and formation of secondary wastes, e.g. the sludge from sediment tanks, spent ion exchange adsorbents and regeneration solutions. There are also many limitations of such processes, i.e. foaming and drop entrainment in evaporators, loses of solvents and production of secondary wastes in solvent extraction or bed clogging in ion exchange columns. Membrane processes as the newest achievement of the process engineering can successfully supersede many non-effective, out-of-date methods. But in some instances they can also complement these methods whilst improving the parameters of effluents and purification economy. This monograph presents own research data on the application of recent achievements in the area of membrane processes for solving selected problems in nuclear technology. Relatively big space was devoted to the use of membrane processing of low and intermediate radioactive liquid wastes because of numerous applications of these processes in nuclear centres over the world and also because of the interests of the author that was reflected by her recent research projects and activity. This work presents a review on the membrane methods recently introduced into the nuclear technology against the background of the other, commonly applied separation techniques, with indications of the possibilities and prospects for their further developments. Particular attention was paid

Characterization of intronic uridine-rich sequence elements acting as possible targets for nuclear proteins during pre-mRNA splicing in Nicotiana plumbaginifolia.

Science.gov (United States)

Gniadkowski, M; Hemmings-Mieszczak, M; Klahre, U; Liu, H X; Filipowicz, W

1996-02-15

Introns of nuclear pre-mRNAs in dicotyledonous plants, unlike introns in vertebrates or yeast, are distinctly rich in A+U nucleotides and this feature is essential for their processing. In order to define more precisely sequence elements important for intron recognition in plants, we investigated the effects of short insertions, either U-rich or A-rich, on splicing of synthetic introns in transfected protoplast of Nicotiana plumbaginifolia. It was found that insertions of U-rich (sequence UUUUUAU) but not A-rich (AUAAAAA) segments can activate splicing of a GC-rich synthetic infron, and that U-rich segments, or multimers thereof, can function irrespective of the site of insertion within the intron. Insertions of multiple U-rich segments, either at the same or different locations, generally had an additive, stimulatory effect on splicing. Mutational analysis showed that replacement of one or two U residues in the UUUUUAU sequence with A or C residues had only a small effect on splicing, but replacement with G residues was strongly inhibitory. Proteins that interact with fragments of natural and synthetic pre-mRNAs in vitro were identified in nuclear extracts of N.plumbaginifolia by UV cross- linking. The profile of cross-linked plant proteins was considerably less complex than that obtained with a HeLa cell nuclear extract. Two major cross-linkable plant proteins had apparent molecular mass of 50 and 54 kDa and showed affinity for oligouridilates present in synGC introns or for poly(U).

The Optimization of Radioactive Waste Management in the Nuclear Installation Decommissioning Process

International Nuclear Information System (INIS)

Zachar, Matej; Necas, Vladimir

2008-01-01

The paper presents a basic characterization of nuclear installation decommissioning process especially in the term of radioactive materials management. A large amount of solid materials and secondary waste created after implementation of decommissioning activities have to be managed considering their physical, chemical, toxic and radiological characteristics. Radioactive materials should be, after fulfilling all the conditions defined by the authorities, released to the environment for the further use. Non-releasable materials are considered to be a radioactive waste. Their management includes various procedures starting with pre-treatment activities, continuing with storage, treatment and conditioning procedures. Finally, they are disposed in the near surface or deep geological repositories. Considering the advantages and disadvantages of all possible ways of releasing the material from nuclear installation area, optimization of the material management process should be done. Emphasis is placed on the radiological parameters of materials, availability of waste management technologies, waste repositories and on the radiological limits and conditions for materials release or waste disposal. Appropriate optimization of material flow should lead to the significant savings of money, disposal capacities or raw material resources. Using a suitable calculation code e.g. OMEGA, the evaluation of the various material management scenarios and selection of the best one, based on the multi-criterion analysis, should be done. (authors)

LMKB/MARF1 localizes to mRNA processing bodies, interacts with Ge-1, and regulates IFI44L gene expression.

Directory of Open Access Journals (Sweden)

Donald B Bloch

Full Text Available The mRNA processing body (P-body is a cellular structure that regulates the stability of cytoplasmic mRNA. MARF1 is a murine oocyte RNA-binding protein that is associated with maintenance of mRNA homeostasis and genomic stability. In this study, autoantibodies were used to identify Limkain B (LMKB, the human orthologue of MARF1, as a P-body component. Indirect immunofluorescence demonstrated that Ge-1 (a central component of the mammalian core-decapping complex co-localized with LMKB in P-bodies. Two-hybrid and co-immunoprecipitation assays were used to demonstrate interaction between Ge-1 and LMKB. The C-terminal 120 amino acids of LMKB mediated interaction with Ge-1 and the N-terminal 1094 amino acids of Ge-1 were required for interaction with LMKB. LMKB is the first protein identified to date that interacts with this portion of Ge-1. LMKB was expressed in human B and T lymphocyte cell lines; depletion of LMKB increased expression of IFI44L, a gene that has been implicated in the cellular response to Type I interferons. The interaction between LMKB/MARF1, a protein that contains RNA-binding domains, and Ge-1, which interacts with core-decapping proteins, suggests that LMKB has a role in the regulation of mRNA stability. LMKB appears to have different functions in different cell types: maintenance of genomic stability in developing oocytes and possible dampening of the inflammatory response in B and T cells.

IEEE guide for planning of pre-operational testing programs for class 1E power systems for nuclear-power generating stations

International Nuclear Information System (INIS)

Anon.

1976-01-01

The Institute of Electrical and Electronics Engineers (IEEE) guide for pre-operational testing of Class 1E power systems for nuclear-power generating stations is presented. The guidelines apply to power systems both ac and dc supplies but not to the equipment which utilizes the ac and dc power. The pre-operational tests are performed after appropriate construction tests

Process of public attitudes toward nuclear power generation

International Nuclear Information System (INIS)

Shimooka, Hiroshi

1993-01-01

The Japanese public attitudes toward nuclear power generation had become negative year by year. After the Chernobyl accident, a percentage of the unfavorable respondent toward nuclear power generation has dramatically increased, and a new type of anti-nuclear movement has been observed. On the basis of our public opinion polls, the reason for this increase was found to be primarily decrease of sense of usefulness rather than increase of sense of nueasiness about nuclear safety. Particularly, social factors (change of life style, progress of civilian consciousness, credibility of the existing institutional system etc.) have influence on the attitude of either pro or anti-nuclear. Based on the above observation, we have inferred that process of the public attitudes has two flows arising from the above social factors, one is the usefulness and the other is the easiness about nuclear safety, and have formulated a model representing the process of public attitudes toward nuclear power. (author)

Low ERCC1 mRNA and protein expression are associated with worse survival in cervical cancer patients treated with radiation alone

International Nuclear Information System (INIS)

Doll, Corinne M.; Prystajecky, Michael; Eliasziw, Misha; Klimowicz, Alexander C.; Petrillo, Stephanie K.; Craighead, Peter S.; Hao, Desiree; Diaz, Roman; Lees-Miller, Susan P.; Magliocco, Anthony M.

2010-01-01

Purpose: To evaluate the association of excision repair cross-complementation group 1 (ERCC1) expression, using both mRNA and protein expression analysis, with clinical outcome in cervical cancer patients treated with radical radiation therapy (RT). Experimental design: Patients (n = 186) with locally advanced cervical cancer, treated with radical RT alone from a single institution were evaluated. Pre-treatment FFPE biopsy specimens were retrieved from 112 patients. ERCC1 mRNA level was determined by real-time PCR, and ERCC1 protein expression (FL297, 8F1) was measured using quantitative immunohistochemistry (AQUA (registered) ). The association of ERCC1 status with local response, 10-year disease-free (DFS) and overall survival (OS) was analyzed. Results: ERCC1 protein expression levels using both FL297 and 8F1 antibodies were determined for 112 patients; mRNA analysis was additionally performed in 32 patients. Clinical and outcome factors were comparable between the training and validation sets. Low ERCC1 mRNA expression status was associated with worse OS (17.9% vs 50.1%, p = 0.046). ERCC1 protein expression using the FL297 antibody, but not the 8F1 antibody, was significantly associated with both OS (p = 0.002) and DFS (p = 0.010). After adjusting for pre-treatment hemoglobin in a multivariate analysis, ERCC1 FL297 expression status remained statistically significant for OS [HR 1.9 (1.1-3.3), p = 0.031]. Conclusions: Pre-treatment tumoral ERCC1 mRNA and protein expression, using the FL297 antibody, are predictive factors for survival in cervical cancer patients treated with RT, with ERCC1 FL297 expression independently associated with survival. These results identify a subset of patients who may derive the greatest benefit from the addition of cisplatin chemotherapy.

A review of blood sample handling and pre-processing for metabolomics studies.

Science.gov (United States)

Hernandes, Vinicius Veri; Barbas, Coral; Dudzik, Danuta

2017-09-01

Metabolomics has been found to be applicable to a wide range of clinical studies, bringing a new era for improving clinical diagnostics, early disease detection, therapy prediction and treatment efficiency monitoring. A major challenge in metabolomics, particularly untargeted studies, is the extremely diverse and complex nature of biological specimens. Despite great advances in the field there still exist fundamental needs for considering pre-analytical variability that can introduce bias to the subsequent analytical process and decrease the reliability of the results and moreover confound final research outcomes. Many researchers are mainly focused on the instrumental aspects of the biomarker discovery process, and sample related variables sometimes seem to be overlooked. To bridge the gap, critical information and standardized protocols regarding experimental design and sample handling and pre-processing are highly desired. Characterization of a range variation among sample collection methods is necessary to prevent results misinterpretation and to ensure that observed differences are not due to an experimental bias caused by inconsistencies in sample processing. Herein, a systematic discussion of pre-analytical variables affecting metabolomics studies based on blood derived samples is performed. Furthermore, we provide a set of recommendations concerning experimental design, collection, pre-processing procedures and storage conditions as a practical review that can guide and serve for the standardization of protocols and reduction of undesirable variation. © 2017 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Nuclear waste processing

International Nuclear Information System (INIS)

Nienhuys, K.; Noordegraaf, D.

1977-04-01

This report is composed with a view to the discussions around the selection of a site in F.R.Germany near the Netherlands' border for a fuel reprocessing plant. Most of the scientific data available are placed side by side, especially those which are contradictory in order to promote better judgement of affairs before governmental decisions are made. The report comprises a brief introduction to nuclear power plants, fuel cycle, radioactive materials and their properties. Next the transportation of wastes from the nuclear power plants to the reprocessing plants is dealt with more extensively, including the processing and the effluents of as well as the experiences with operational reprocessing plants. The hazards from manipulation of radioactive materials accidents and theft are outlined in each case, followed by a problem discussion. The appendix illustrates the German concept of 'industrial park for after-treatment and disposal'

Expression of mRNA for galanin, galanin-like peptide and galanin receptors 1-3 in the ovine hypothalamus and pituitary gland: effects of age and gender.

Science.gov (United States)

Whitelaw, Christine Margaret; Robinson, Jane Elizabeth; Chambers, George Ballantine; Hastie, Peter; Padmanabhan, Vasantha; Thompson, Robert Charles; Evans, Neil Price

2009-01-01

The neurotransmitters/neuromodulators galanin (GAL) and galanin-like peptide (GALP) are known to operate through three G protein-coupled receptors, GALR1, GALR2 and GALR3. The aim of this study was to investigate changes in expression of mRNA for galanin, GALP and GALR1-3 in the hypothalamus and pituitary gland, of male and female sheep, to determine how expression changed in association with growth and the attainment of reproductive competence. Tissue samples from the hypothalami and pituitary glands were analysed from late foetal and pre-pubertal lambs and adult sheep. Although mRNA for galanin and GALR1-3 was present in both tissues, at all ages and in both genders, quantification of GALP mRNA was not possible due to its low levels of expression. mRNA expression for both galanin and its receptors was seen to change significantly in both tissues as a function of age. Specifically, hypothalamic galanin mRNA expression increased with age in the male, but decreased with age in the female pituitary gland. mRNA expression for all receptors increased between foetal and pre-pubertal age groups and decreased significantly between pre-pubertal and adult animals. The results indicate that the expression of mRNA for galanin and its receptors changes dynamically with age and those significant differences exist with regard to tissue type and gender. These changes suggest that galaninergic neuroendocrine systems could be involved in the regulation of ovine growth and or the development of reproductive competence. The roles played by these systems in the sheep, however, may differ from other species, in particular the neuroendocrine link between nutrition and reproduction and GALR1's role in pituitary signalling.

Primary processes initiated by nuclear transformations in solids

International Nuclear Information System (INIS)

Sano, Hirotoshi

1975-01-01

Primary processes of hot atom production initiated by nuclear transformation were discussed from past studies using Moessbauer spectroscopy. Many insulators (dielectric substances) showed various effect, such as abnormaly oxdized condition, following nuclear disintegration within the time duration of the life of Moessbauer nuclear excited state. Supposing these hot atom processes belonged to radiochemical processes, radiochemical characteristics of a certain chemical substance could be clarified by placing Moessbauer nuclide in the neighbourhood of the chemical substance to be studied. Chemical effects of disintegrated atom in the first and second composition, chemical substances produced in the surroundings of disintegrated atom, and environmental disturbance of disintegrated atom were studied and discussed. (Tsukamoto, Y.)

Remote nuclear green pellet processing system

International Nuclear Information System (INIS)

Cellier, Francis.

1980-01-01

An automated system for manufacturing nuclear fuel pellets for use in nuclear fuel elements of nuclear power reactors is described. The system comprises process components arranged vertically but not directly under each other within a single enclosure. The vertical-lateral arrangement provides for gravity flow of the product from one component to the next and for removal of each component without interference with the other components. The single enclosure eliminates time consuming transfer between separate enclosures of each component while providing three-sided access to the component through glove ports. (auth)

An interdisciplinary approach to study Pre-Earthquake processes

Science.gov (United States)

Ouzounov, D.; Pulinets, S. A.; Hattori, K.; Taylor, P. T.

2017-12-01

We will summarize a multi-year research effort on wide-ranging observations of pre-earthquake processes. Based on space and ground data we present some new results relevant to the existence of pre-earthquake signals. Over the past 15-20 years there has been a major revival of interest in pre-earthquake studies in Japan, Russia, China, EU, Taiwan and elsewhere. Recent large magnitude earthquakes in Asia and Europe have shown the importance of these various studies in the search for earthquake precursors either for forecasting or predictions. Some new results were obtained from modeling of the atmosphere-ionosphere connection and analyses of seismic records (foreshocks /aftershocks), geochemical, electromagnetic, and thermodynamic processes related to stress changes in the lithosphere, along with their statistical and physical validation. This cross - disciplinary approach could make an impact on our further understanding of the physics of earthquakes and the phenomena that precedes their energy release. We also present the potential impact of these interdisciplinary studies to earthquake predictability. A detail summary of our approach and that of several international researchers will be part of this session and will be subsequently published in a new AGU/Wiley volume. This book is part of the Geophysical Monograph series and is intended to show the variety of parameters seismic, atmospheric, geochemical and historical involved is this important field of research and will bring this knowledge and awareness to a broader geosciences community.

Domain general sequence operations contribute to pre-SMA involvement in visuo-spatial processing

Directory of Open Access Journals (Sweden)

E. Charles eLeek

2016-01-01

Full Text Available This study used 3T MRI to elucidate the functional role of supplementary motor area (SMA in relation to visuo-spatial processing. A localizer task contrasting sequential number subtraction and repetitive button pressing was used to functionally delineate non-motor sequence processing in pre-SMA, and activity in SMA-proper associated with motor sequencing. Patterns of BOLD responses in these regions were then contrasted to those from two tasks of visuo-spatial processing. In one task participants performed mental rotation in which recognition memory judgments were made to previously memorized 2D novel patterns across image-plane rotations. The other task involved abstract grid navigation in which observers computed a series of imagined location shifts in response to directional (arrow cues around a mental grid. The results showed overlapping activation in pre-SMA for sequential subtraction and both visuo-spatial tasks. These results suggest that visuo-spatial processing is supported by non-motor sequence operations that involve pre-SMA. More broadly, these data further highlight the functional heterogeneity of pre-SMA, and show that its role extends to processes beyond the planning and online control of movement.

Genome-wide mapping of infection-induced SINE RNAs reveals a role in selective mRNA export.

Science.gov (United States)

Karijolich, John; Zhao, Yang; Alla, Ravi; Glaunsinger, Britt

2017-06-02

Short interspersed nuclear elements (SINEs) are retrotransposons evolutionarily derived from endogenous RNA Polymerase III RNAs. Though SINE elements have undergone exaptation into gene regulatory elements, how transcribed SINE RNA impacts transcriptional and post-transcriptional regulation is largely unknown. This is partly due to a lack of information regarding which of the loci have transcriptional potential. Here, we present an approach (short interspersed nuclear element sequencing, SINE-seq), which selectively profiles RNA Polymerase III-derived SINE RNA, thereby identifying transcriptionally active SINE loci. Applying SINE-seq to monitor murine B2 SINE expression during a gammaherpesvirus infection revealed transcription from 28 270 SINE loci, with ∼50% of active SINE elements residing within annotated RNA Polymerase II loci. Furthermore, B2 RNA can form intermolecular RNA-RNA interactions with complementary mRNAs, leading to nuclear retention of the targeted mRNA via a mechanism involving p54nrb. These findings illuminate a pathway for the selective regulation of mRNA export during stress via retrotransposon activation. © The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research.

Parallel finite elements with domain decomposition and its pre-processing

International Nuclear Information System (INIS)

Yoshida, A.; Yagawa, G.; Hamada, S.

1993-01-01

This paper describes a parallel finite element analysis using a domain decomposition method, and the pre-processing for the parallel calculation. Computer simulations are about to replace experiments in various fields, and the scale of model to be simulated tends to be extremely large. On the other hand, computational environment has drastically changed in these years. Especially, parallel processing on massively parallel computers or computer networks is considered to be promising techniques. In order to achieve high efficiency on such parallel computation environment, large granularity of tasks, a well-balanced workload distribution are key issues. It is also important to reduce the cost of pre-processing in such parallel FEM. From the point of view, the authors developed the domain decomposition FEM with the automatic and dynamic task-allocation mechanism and the automatic mesh generation/domain subdivision system for it. (author)

Nuclear reactor application for high temperature power industrial processes

International Nuclear Information System (INIS)

Dollezhal', N.A.; Zaicho, N.D.; Alexeev, A.M.; Baturov, B.B.; Karyakin, Yu.I.; Nazarov, E.K.; Ponomarev-Stepnoj, N.N.; Protzenko, A.M.; Chernyaev, V.A.

1977-01-01

This report gives the results of considerations on industrial heat and technology processes (in chemistry, steelmaking, etc.) from the point of view of possible ways, technical conditions and nuclear safety requirements for the use of high temperature reactors in these processes. Possible variants of energy-technological diagrams of nuclear-steelmaking, methane steam-reforming reaction and other processes, taking into account the specific character of nuclear fuel are also given. Technical possibilities and economic conditions of the usage of different types of high temperature reactors (gas cooled reactors and reactors which have other means of transport of nuclear heat) in heat processes are examined. The report has an analysis of the problem, that arises with the application of nuclear reactors in energy-technological plants and an evaluation of solutions of this problem. There is a reason to suppose that we will benefit from the use of high temperature reactors in comparison with the production based on high quality fossil fuel [ru

Processing of three-dimensional structures of Nuclear Medicine in PET modality

International Nuclear Information System (INIS)

Pacheco, Edward Florez; Furuie, Sergio Shiguemi

2013-01-01

The nuclear medicine, as a specialty to obtain medical images is very important, and it has became one of the main procedures utilized in health care centers to analyze the metabolic behavior of the patient. This project was based on medical images obtained by the PET modality (Positron Emission Tomography). Thus, we developed a framework for processing Nuclear Medicine three-dimensional images of the PET modality, which is composed of consecutive steps that start with the generation of standard images (gold standard) by using simulated images of the Left Ventricular Heart, such as phantoms obtained from the NCAT-4D software. Then, Poisson quantum noise was introduced into the whole volume to simulate the characteristic noises in PET images. Subsequently, the pre-processing step was executed by using specific 3D filters, such as the median filter, the weighted Gaussian filter, and the Anscombe/Wiener filter. Then the segmentation process, which is based on the fuzzy connectedness theory, was implemented. For that purpose four different 3D approaches were implemented: Generic, LIFO, kTetaFOEMS, and dynamic weight algorithm. Finally, an assessment procedure was used as a measurement tool to quantify three parameters (true positive, false positive and maximum distance) that determined the level of efficiency and precision of our process. It was found that the pair filter - segmenter formed by the Anscombe/Wiener filter together with the Fuzzy segmenter based on dynamic weights provided the best results, with VP and FP rates of 98.49 ±0.27% and 2.19 ±0.19%, respectively, for the simulation of the left ventricular volume. Along with the set of choices made during the processing structure, the project was finished with the analysis of a small number of volumes that belonged to a real PET test, thus the quantification of the volumes was obtained. (author)

The nuclear fission process

International Nuclear Information System (INIS)

Wagemans, C.

1991-01-01

Fifty years after its discovery, the nuclear fission phenomenon is of recurring interest. When its fundamental physics aspects are considered, fission is viewed in a very positive way, which is reflected in the great interest generated by the meetings and large conferences organized for the 50th anniversary of its discovery. From a purely scientific and practical point of view, a new book devoted to the (low energy) nuclear fission phenomenon was highly desirable considering the tremendous amount of new results obtained since the publication of the book Nuclear Fission by Vandenbosch and Huizenga in 1973 (Academic Press). These new results could be obtained thanks to the growth of technology, which enabled the construction of powerful new neutron sources, particle and heavy ion accelerators, and very performant data-acquisition and computer systems. The re-invention of the ionization chamber, the development of large fission fragment spectrometers and sophisticated multiparameter devices, and the production of exotic isotopes also contributed significantly to an improved understanding of nuclear fission. This book is written at a level to introduce graduate students to the exciting subject of nuclear fission. The very complete list of references following each chapter also makes the book very useful for scientists, especially nuclear physicists. The book has 12 chapters covering the fission barrier and the various processes leading to fission as well as the characteristics of the various fission reaction products. In order to guarantee adequate treatment of the very specialized research fields covered, several distinguished scientists actively involved in some of these fields were invited to contribute their expertise as authors or co-authors of the different chapters

Gas processing at DOE nuclear facilities

Energy Technology Data Exchange (ETDEWEB)

Jacox, J.

1995-02-01

The term {open_quotes}Gas Processing{close_quotes} has many possible meanings and understandings. In this paper, and panel, we will be using it to generally mean the treatment of gas by methods other than those common to HVAC and Nuclear Air Treatment. This is only a working guideline not a rigorous definition. Whether a rigorous definition is desirable, or even possible is a question for some other forum. Here we will be discussing the practical aspects of what {open_quotes}Gas Processing{close_quotes} includes and how existing Codes, Standards and industry experience can, and should, apply to DOE and NRC Licensed facilities. A major impediment to use of the best engineering and technology in many nuclear facilities is the administrative mandate that only systems and equipment that meet specified {open_quotes}nuclear{close_quotes} documents are permissible. This paper will highlight some of the limitations created by this approach.

Pre-OSART mission highlights. 1988-1990

International Nuclear Information System (INIS)

1994-09-01

The IAEA Pre-Operational Safety Review Teams (Pre-OSART) programme is part of the Operational Safety Review teams (OSART) programme and provides advice and assistance to Member States for enhancing the operational safety of nuclear power plants. OSART and Pre-OSART reviews are available to all countries with nuclear power plants in operation or approaching operation. Most of these countries have participated in the programme, by hosting one or more OSART or Pre-OSART missions or by making experts available to participate in missions. This document, which summarizes the finding of Pre-OSART reviews, covers the period from January 1988 to December 1990, and it is intended that further such documents will be prepared to cover subsequent Pre-OSART reviews

Considerations about the licensing process of special nuclear industrial facilities

Energy Technology Data Exchange (ETDEWEB)

Talarico, M.A., E-mail: talaricomarco@hotmail.com [Marinha do Brasil, Rio de Janeiro, RJ (Brazil). Coordenacao do Porgrama de Submarino com Propulsao Nuclear; Melo, P.F. Frutuoso e [Coordenacao dos Programas de Pos-Graduacao em Engenharia (COPPE/UFRJ), Rio de Janeiro, RJ (Brazil). Programa de Engenharia Nuclear

2015-07-01

This paper brings a discussion about the challenges involved in the development of a new kind of nuclear facility in Brazil, a naval base for nuclear submarines, with attention to the licensing process and considerations about the risk-informed decision making application to the licensing process. Initially, a model of such a naval base, called in this work, special industrial facility, is proposed, with its systems and respective sets of basic requirements, in order to make it possible the accomplishment of the special industrial facility support function to the nuclear submarine. A discussion about current challenges to overcome in this project is presented: the challenges due to the new characteristics of this type of nuclear facility; existence of several interfaces between the special industrial facilities systems and nuclear submarine systems in design activities; lack of specific regulation in Brazil to allow the licensing process of special industrial facilities by the nuclear safety authority; and comments about the lack of information from reference nuclear facilities, as is the case with nuclear power reactors (for example, the German Grafenrheinfeld nuclear plant is the reference plant for the Brazilian Angra 2 nuclear plant). Finally, in view of these challenges, an analysis method of special industrial facility operational scenarios to assist the licensing process is proposed. Also, considerations about the application of risk-informed decision making to the special industrial facility activity and licensing process in Brazil are presented. (author)

Considerations about the licensing process of special nuclear industrial facilities

International Nuclear Information System (INIS)

Talarico, M.A.; Melo, P.F. Frutuoso e

2015-01-01

This paper brings a discussion about the challenges involved in the development of a new kind of nuclear facility in Brazil, a naval base for nuclear submarines, with attention to the licensing process and considerations about the risk-informed decision making application to the licensing process. Initially, a model of such a naval base, called in this work, special industrial facility, is proposed, with its systems and respective sets of basic requirements, in order to make it possible the accomplishment of the special industrial facility support function to the nuclear submarine. A discussion about current challenges to overcome in this project is presented: the challenges due to the new characteristics of this type of nuclear facility; existence of several interfaces between the special industrial facilities systems and nuclear submarine systems in design activities; lack of specific regulation in Brazil to allow the licensing process of special industrial facilities by the nuclear safety authority; and comments about the lack of information from reference nuclear facilities, as is the case with nuclear power reactors (for example, the German Grafenrheinfeld nuclear plant is the reference plant for the Brazilian Angra 2 nuclear plant). Finally, in view of these challenges, an analysis method of special industrial facility operational scenarios to assist the licensing process is proposed. Also, considerations about the application of risk-informed decision making to the special industrial facility activity and licensing process in Brazil are presented. (author)

Copper-induced tight junction mRNA expression changes, apoptosis and antioxidant responses via NF-κB, TOR and Nrf2 signaling molecules in the gills of fish: Preventive role of arginine

International Nuclear Information System (INIS)

Wang, Biao; Feng, Lin; Jiang, Wei-Dan; Wu, Pei; Kuang, Sheng-Yao; Jiang, Jun; Tang, Ling; Tang, Wu-Neng; Zhang, Yong-An; Liu, Yang

2015-01-01

Highlights: • Cu exposure induced oxidative stress via disruption of antioxidant system. • Cu exposure disrupted TJ mRNA expression through regulation of cytokines in fish. • Cu induced gill apoptosis partly via intrinsic pathway but not extrinsic pathway. • Cu exposure can regulate Nrf2, NF-κB and TOR signaling molecules in fish. • Arginine can effectively prevent Cu-induced fish gill damage. - Abstract: This study explored the possible preventive effects of dietary arginine on copper (Cu)-induced tight junction mRNA expression changes, apoptosis and antioxidant responses in the gills of young grass carp (Ctenopharyngodon idella). The results indicated that exposure to 0.7 mg/L (11.01 μmol/L) Cu for 96 h induced the production of reactive oxygen species (ROS), thereby increasing protein oxidation, lipid peroxidation and DNA damage in the gills of fish. However, these oxidative effects were prevented by arginine supplementation. Arginine also prevented the toxic effects of Cu on the activities of copper/zinc superoxide dismutase (SOD1), glutathione-S-transferase (GST), glutathione peroxidase (GPx), glutathione reductase (GR) and the glutathione (GSH) content (P < 0.05). However, Cu induced an adaptive increase in the activity of catalase (CAT), and arginine supplementation further increased CAT activity (P < 0.05). Moreover, Cu induced increases in the relative mRNA expressions of SOD1, CAT, GPx, GST, caspase-3, caspase-9, NF-E2-related factor 2 (Nrf2), Kelch-like-ECH-associated protein 1a (Keap1a), tumor necrosis factor-α (TNF-α), interleukin-1β (IL-1β), interleukin-8 (IL-8), transforming growth factor-β (TGF-β) and nuclear transcription factor-κB p65 (NF-κB p65) in the gills of grass carp (P < 0.05). In contrast, the relative mRNA expression levels of occludin, zonula occludens-1 (ZO-1), claudin b, claudin 3, claudin 12, target of rapamycin (TOR) and inhibitor factor κBα (IκBα) in the gills were decreased by Cu (P < 0.05). However, pre

Copper-induced tight junction mRNA expression changes, apoptosis and antioxidant responses via NF-κB, TOR and Nrf2 signaling molecules in the gills of fish: Preventive role of arginine

Energy Technology Data Exchange (ETDEWEB)

Wang, Biao [Animal Nutrition Institute, Sichuan Agricultural University, Chengdu 611130, Sichuan (China); Feng, Lin; Jiang, Wei-Dan [Animal Nutrition Institute, Sichuan Agricultural University, Chengdu 611130, Sichuan (China); Fish Nutrition and Safety Production University Key Laboratory of Sichuan Province, Sichuan Agricultural University, Chengdu 611130, Sichuan (China); Key Laboratory for Animal Disease-Resistance Nutrition of China Ministry of Education, Sichuan Agricultural University, Chengdu 611130, Sichuan (China); Wu, Pei [Animal Nutrition Institute, Sichuan Agricultural University, Chengdu 611130, Sichuan (China); Kuang, Sheng-Yao [Animal Nutrition Institute, Sichuan Academy of Animal Science, Chengdu, 610066, Sichuan (China); Jiang, Jun [Animal Nutrition Institute, Sichuan Agricultural University, Chengdu 611130, Sichuan (China); Fish Nutrition and Safety Production University Key Laboratory of Sichuan Province, Sichuan Agricultural University, Chengdu 611130, Sichuan (China); Key Laboratory for Animal Disease-Resistance Nutrition of China Ministry of Education, Sichuan Agricultural University, Chengdu 611130, Sichuan (China); Tang, Ling; Tang, Wu-Neng [Animal Nutrition Institute, Sichuan Academy of Animal Science, Chengdu, 610066, Sichuan (China); Zhang, Yong-An [Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072 (China); Liu, Yang, E-mail: kyckgk@hotmail.com [Animal Nutrition Institute, Sichuan Agricultural University, Chengdu 611130, Sichuan (China); Fish Nutrition and Safety Production University Key Laboratory of Sichuan Province, Sichuan Agricultural University, Chengdu 611130, Sichuan (China); Key Laboratory for Animal Disease-Resistance Nutrition of China Ministry of Education, Sichuan Agricultural University, Chengdu 611130, Sichuan (China); and others

2015-01-15

Highlights: • Cu exposure induced oxidative stress via disruption of antioxidant system. • Cu exposure disrupted TJ mRNA expression through regulation of cytokines in fish. • Cu induced gill apoptosis partly via intrinsic pathway but not extrinsic pathway. • Cu exposure can regulate Nrf2, NF-κB and TOR signaling molecules in fish. • Arginine can effectively prevent Cu-induced fish gill damage. - Abstract: This study explored the possible preventive effects of dietary arginine on copper (Cu)-induced tight junction mRNA expression changes, apoptosis and antioxidant responses in the gills of young grass carp (Ctenopharyngodon idella). The results indicated that exposure to 0.7 mg/L (11.01 μmol/L) Cu for 96 h induced the production of reactive oxygen species (ROS), thereby increasing protein oxidation, lipid peroxidation and DNA damage in the gills of fish. However, these oxidative effects were prevented by arginine supplementation. Arginine also prevented the toxic effects of Cu on the activities of copper/zinc superoxide dismutase (SOD1), glutathione-S-transferase (GST), glutathione peroxidase (GPx), glutathione reductase (GR) and the glutathione (GSH) content (P < 0.05). However, Cu induced an adaptive increase in the activity of catalase (CAT), and arginine supplementation further increased CAT activity (P < 0.05). Moreover, Cu induced increases in the relative mRNA expressions of SOD1, CAT, GPx, GST, caspase-3, caspase-9, NF-E2-related factor 2 (Nrf2), Kelch-like-ECH-associated protein 1a (Keap1a), tumor necrosis factor-α (TNF-α), interleukin-1β (IL-1β), interleukin-8 (IL-8), transforming growth factor-β (TGF-β) and nuclear transcription factor-κB p65 (NF-κB p65) in the gills of grass carp (P < 0.05). In contrast, the relative mRNA expression levels of occludin, zonula occludens-1 (ZO-1), claudin b, claudin 3, claudin 12, target of rapamycin (TOR) and inhibitor factor κBα (IκBα) in the gills were decreased by Cu (P < 0.05). However, pre

Inhibition of fat cell differentiation in 3T3-L1 pre-adipocytes by all-trans retinoic acid: Integrative analysis of transcriptomic and phenotypic data

Directory of Open Access Journals (Sweden)

Katharina Stoecker

2017-03-01

Full Text Available The process of adipogenesis is controlled in a highly orchestrated manner, including transcriptional and post-transcriptional events. In developing 3T3-L1 pre-adipocytes, this program can be interrupted by all-trans retinoic acid (ATRA. To examine this inhibiting impact by ATRA, we generated large-scale transcriptomic data on the microRNA and mRNA level. Non-coding RNAs such as microRNAs represent a field in RNA turnover, which is very important for understanding the regulation of mRNA gene expression. High throughput mRNA and microRNA expression profiling was performed using mRNA hybridisation microarray technology and multiplexed expression assay for microRNA quantification. After quantitative measurements we merged expression data sets, integrated the results and analysed the molecular regulation of in vitro adipogenesis. For this purpose, we applied local enrichment analysis on the integrative microRNA-mRNA network determined by a linear regression approach. This approach includes the target predictions of TargetScan Mouse 5.2 and 23 pre-selected, significantly regulated microRNAs as well as Affymetrix microarray mRNA data. We found that the cellular lipid metabolism is negatively affected by ATRA. Furthermore, we were able to show that microRNA 27a and/or microRNA 96 are important regulators of gap junction signalling, the rearrangement of the actin cytoskeleton as well as the citric acid cycle, which represent the most affected pathways with regard to inhibitory effects of ATRA in 3T3-L1 preadipocytes. In conclusion, the experimental workflow and the integrative microRNA–mRNA data analysis shown in this study represent a possibility for illustrating interactions in highly orchestrated biological processes. Further the applied global microRNA–mRNA interaction network may also be used for the pre-selection of potential new biomarkers with regard to obesity or for the identification of new pharmaceutical targets.

Conversation on data mining strategies in LC-MS untargeted metabolomics: pre-processing and pre-treatment steps

CSIR Research Space (South Africa)

Tugizimana, F

2016-11-01

Full Text Available -MS)-based untargeted metabolomic dataset, this study explored the influence of collection parameters in the data pre-processing step, scaling and data transformation on the statistical models generated, and feature selection, thereafter. Data obtained in positive mode...

The upstream open reading frame of cyclin-dependent kinase inhibitor 1A mRNA negatively regulates translation of the downstream main open reading frame

Energy Technology Data Exchange (ETDEWEB)

Kim, Kyoung Mi; Cho, Hana [School of Life Sciences and Biotechnology, Korea University, Seoul 136-701 (Korea, Republic of); Kim, Yoon Ki, E-mail: yk-kim@korea.ac.kr [School of Life Sciences and Biotechnology, Korea University, Seoul 136-701 (Korea, Republic of)

2012-08-03

Highlights: Black-Right-Pointing-Pointer CDKN1A mRNA is a bona fide NMD substrate. Black-Right-Pointing-Pointer The uORF of CDKN1A mRNA is efficiently translated. Black-Right-Pointing-Pointer Translation of downstream main ORF is negatively regulated by translation of uORF in CDKN1A mRNA. -- Abstract: The first round of translation occurs on mRNAs bound by nuclear cap-binding complex (CBC), which is composed of nuclear cap-binding protein 80 and 20 (CBP80/20). During this round of translation, aberrant mRNAs are recognized and downregulated in abundance by nonsense-mediated mRNA decay (NMD), which is one of the mRNA quality control mechanisms. Here, our microarray analysis reveals that the level of cyclin-dependent kinase inhibitor 1A (CDKN1A; also known as Waf1/p21) mRNAs increases in cells depleted of cellular NMD factors. Intriguingly, CDKN1A mRNA contains an upstream open reading frame (uORF), which is a NMD-inducing feature. Using chimeric reporter constructs, we find that the uORF of CDKN1A mRNA negatively modulates translation of the main downstream ORF. These findings provide biological insights into the possible role of NMD in diverse biological pathways mediated by CDKN1A.

The development of application technology for image processing in nuclear facilities

International Nuclear Information System (INIS)

Lee, Jong Min; Lee, Yong Bum; Kim, Woog Ki; Sohn, Surg Won; Kim, Seung Ho; Hwang, Suk Yeoung; Kim, Byung Soo

1991-01-01

The object of this project is to develop application technology of image processing in nuclear facilities where image signal are used for reliability and safety enhancement of operation, radiation exposure reduce of operator, and automation of operation processing. We has studied such application technology for image processing in nuclear facilities as non-tactile measurement, remote and automatic inspection, remote control, and enhanced analysis of visual information. On these bases, automation system and real-time image processing system are developed. Nuclear power consists in over 50% share of electic power supply of our country nowdays. So, it is required of technological support for top-notch technology in nuclear industry and its related fields. Especially, it is indispensable for image processing technology to enhance the reliabilty and safety of operation, to automate the process in a place like a nuclear power plant and radioactive envionment. It is important that image processing technology is linked to a nuclear engineering, and enhance the reliability abd safety of nuclear operation, as well as decrease the dose rate. (Author)

Programs for low-energy nuclear physics data processing

International Nuclear Information System (INIS)

Antuf'ev, Yu.P.; Dejneko, A.S.; Ekhichev, O.I.; Kuz'menko, V.A.; Mashkarov, Yu.G.; Nemashkalo, B.A.; Skakun, E.A.; Storizhko, V.E.; Shlyakhov, N.A.

1978-01-01

Purpose of six computer programs developed in KhPTI of AN USSR for the processing of the experimental data on low energy nuclear physics ia friendly described. The programs are written in Algol-60 language. They are applied to some types of nuclear reactions and permit to process differential cross sections and γ spectra, to compute statistical tensors and excitation functions as well as to analyze some processes by means of theoretical models

Mucin gene mRNA levels in broilers challenged with eimeria and/or Clostridium perfringens.

Science.gov (United States)

Kitessa, Soressa M; Nattrass, Gregory S; Forder, Rebecca E A; McGrice, Hayley A; Wu, Shu-Biao; Hughes, Robert J

2014-09-01

The effects of Eimeria (EM) and Clostridium perfringens (CP) challenges on the mRNA levels of genes involved in mucin (Muc) synthesis (Muc2, Muc5ac, Muc13, and trefoil family factor-2 [TFF2]), inflammation (tumor necrosis factor alpha [TNF-alpha] and interleukin-18 [IL-18]), and metabolic processes (cluster of differentiation [CD]36) in the jejunum of broilers were investigated. Two parallel experiments involving 1) EM challenge and 2) EM and CP challenges were conducted. The first experiment was a 2 X 2 study with 12 birds per treatment (N = 48) involving fishmeal substitution (25%) in the diet (FM) and EM challenge. The treatments were: Control (FM-, EM-), Fishmeal (FM+, EM-), EM challenge (FM-, EM+), and fishmeal substitution and EM challenge (FM+, EM+). The second experiment was a 2 X 2 X 2 experiment with six birds per treatment (N = 48) involving fishmeal (FM-, FM+), Eimeria (EM-, EM+), and C perfringens (CP-, CP+). In both arms of the study, male broilers were given a starter diet for the whole period of 16 days, except those assigned to FM+, where 25% of the starter ration was replaced with fishmeal from days 8 to 14. EM inoculation was performed on day 9 and CP inoculation on days 14 and 15. The EM challenge birds were euthanatized for sampling on day 13; postmortem examination and sampling for the Eimeria plus C perfringens challenge arm of the study were on day 16. In the Eimeria challenge arm of the study, fishmeal supplementation significantly suppressed the mRNA levels of TNF-alpha, TFF2, and IL-18 pre-CP inoculation but simultaneously increased the levels of Muc13 and CD36 mRNAs. Birds challenged with Eimeria exhibited increased mRNA levels of Muc13, Muc5ac, TNF-alpha, and IL-18. In the Eimeria and C. perfringens challenge arm, birds exposed to EM challenge exhibited significantly lower mRNA levels of Muc2 and CD36. The mRNA levels of CD36 were also significantly suppressed by CP challenge. Our results showed that the transcription of mucin synthesis

Summary of ENDF/B pre-processing codes

International Nuclear Information System (INIS)

Cullen, D.E.

1981-12-01

This document contains the summary documentation for the ENDF/B pre-processing codes: LINEAR, RECENT, SIGMA1, GROUPIE, EVALPLOT, MERGER, DICTION, CONVERT. This summary documentation is merely a copy of the comment cards that appear at the beginning of each programme; these comment cards always reflect the latest status of input options, etc. For the latest published documentation on the methods used in these codes see UCRL-50400, Vol.17 parts A-E, Lawrence Livermore Laboratory (1979)

Nuclear export of human hepatitis B virus core protein and pregenomic RNA depends on the cellular NXF1-p15 machinery.

Science.gov (United States)

Yang, Ching-Chun; Huang, Er-Yi; Li, Hung-Cheng; Su, Pei-Yi; Shih, Chiaho

2014-01-01

Hepatitis B virus (HBV) core protein (HBc) can shuttle between nucleus and cytoplasm. Cytoplasm-predominant HBc is clinically associated with severe liver inflammation. Previously, we found that HBc arginine-rich domain (ARD) can associate with a host factor NXF1 (TAP) by coimmunoprecipitation. It is well known that NXF1-p15 heterodimer can serve as a major export receptor of nuclear mRNA as a ribonucleoprotein complex (RNP). In the NXF1-p15 pathway, TREX (transcription/export) complex plays an important role in coupling nuclear pre-mRNA processing with mRNA export in mammalian cells. Here, we tested the hypothesis whether HBc and HBV specific RNA can be exported via the TREX and NXF1-p15 mediated pathway. We demonstrated here that HBc can physically and specifically associate with TREX components, and the NXF1-p15 export receptor by coimmunoprecipitation. Accumulation of HBc protein in the nucleus can be induced by the interference with TREX and NXF1-p15 mediated RNA export machinery. HBV transcripts encodes a non-spliced 3.5 kb pregenomic RNA (pgRNA) which can serve as a template for reverse transcription. Cytoplasmic HBV pgRNA appeared to be reduced by siRNA treatment specific for the NXF1-p15 complex by quantitative RT-qPCR and Northern blot analyses. This result suggests that the pgRNA was also exported via the NXF1-p15 machinery. We entertain the hypothesis that HBc protein can be exported as an RNP cargo via the mRNA export pathway by hijacking the TREX and NXF1-p15 complex. In our current and previous studies, HBc is not required for pgRNA accumulation in the cytoplasm. Furthermore, HBc ARD can mediate nuclear export of a chimeric protein containing HBc ARD in a pgRNA-independent manner. Taken together, it suggests that while both pgRNA and HBc protein exports are dependent on NXF1-p15, they are using the same export machinery in a manner independent of each other.

mRNA processing in mutant zebrafish lines generated by chemical and CRISPR-mediated mutagenesis produces unexpected transcripts that escape nonsense-mediated decay.

Directory of Open Access Journals (Sweden)

Jennifer L Anderson

2017-11-01

Full Text Available As model organism-based research shifts from forward to reverse genetics approaches, largely due to the ease of genome editing technology, a low frequency of abnormal phenotypes is being observed in lines with mutations predicted to lead to deleterious effects on the encoded protein. In zebrafish, this low frequency is in part explained by compensation by genes of redundant or similar function, often resulting from the additional round of teleost-specific whole genome duplication within vertebrates. Here we offer additional explanations for the low frequency of mutant phenotypes. We analyzed mRNA processing in seven zebrafish lines with mutations expected to disrupt gene function, generated by CRISPR/Cas9 or ENU mutagenesis methods. Five of the seven lines showed evidence of altered mRNA processing: one through a skipped exon that did not lead to a frame shift, one through nonsense-associated splicing that did not lead to a frame shift, and three through the use of cryptic splice sites. These results highlight the need for a methodical analysis of the mRNA produced in mutant lines before making conclusions or embarking on studies that assume loss of function as a result of a given genomic change. Furthermore, recognition of the types of adaptations that can occur may inform the strategies of mutant generation.

Concerning permission of change in nuclear fuel processing business of Japan Nuclear Fuel Co. , Ltd

Energy Technology Data Exchange (ETDEWEB)

1988-12-01

In response to an inquiry on the title issue received on Jun. 17, 1988, the Nuclear Safety Commission made a study and submitted the findings to the Prime Minister on Jul. 21, 1988. The study was intended to determine the conformity of the permission to the applicable criteria specified in laws relating to control of nuclear material, nuclear fuel and nuclear reactor. The proposed modification plan included changes in the facilities in the No.1 processing building and changes in processing methods which were required to perform processing of blanket fuel assemblies for fast breeder reactor. It also included changes in the facilities in the No.2 building which were required to improve the processes. The safety study covered the anti-earthquake performance, fire/explosion prevention, criticality control, containment performance, radioactive waste disposal, and other major safety issues. Other investigations included exposure dose evaluation and accident analysis. Study results were examined on the basis of the Basic Guidelines for Nuclear Fuel Facilities Safety Review and the Uranium Processing Safety Review Guidelines. It was concluded that the modifications would not have adverse effect on the safety of the facilities. (Nogami, K.).

Concerning permission of change in nuclear fuel processing business of Japan Nuclear Fuel Co., Ltd

International Nuclear Information System (INIS)

1988-01-01

In response to an inquiry on the title issue received on Jun. 17, 1988, the Nuclear Safety Commission made a study and submitted the findings to the Prime Minister on Jul. 21, 1988. The study was intended to determine the conformity of the permission to the applicable criteria specified in laws relating to control of nuclear material, nuclear fuel and nuclear reactor. The proposed modification plan included changes in the facilities in the No.1 processing building and changes in processing methods which were required to perform processing of blanket fuel assemblies for fast breeder reactor. It also included changes in the facilities in the No.2 building which were required to improve the processes. The safety study covered the anti-earthquake performance, fire/explosion prevention, criticality control, containment performance, radioactive waste disposal, and other major safety issues. Other investigations included exposure dose evaluation and accident analysis. Study results were examined on the basis of the Basic Guidelines for Nuclear Fuel Facilities Safety Review and the Uranium Processing Safety Review Guidelines. It was concluded that the modifications would not have adverse effect on the safety of the facilities. (Nogami, K.)

RNA processing and ribonucleoprotein assembly studied in vivo by RNA transfection

International Nuclear Information System (INIS)

Kleinschmidt, A.M.; Pederson, T.

1990-01-01

The authors present a method for studying RNA processing and ribonucleoprotein assembly in vivo, by using RNA synthesized in vitro. SP6-transcribed 32 P-labeled U2 small nuclear RNA precursor molecules were introduced into cultured human 293 cells by calcium phosphate-mediated uptake, as in standard DNA transfection experiments. RNase protection mapping demonstrated that the introduced pre-U2 RNA underwent accurate 3' end processing. The introduced U2 RNA was assembled into ribonucleoprotein particles that reacted with an antibody specific for proteins known to be associated with the U2 small nuclear ribonucleoprotein particle. The 3' end-processed, ribonucleoprotein-assembled U2 RNA accumulated in the nuclear fraction. When pre-U2 RNA with a 7-methylguanosine group at the 5' end was introduced into cells, it underwent conversion to a 2,2,7-trimethylguanosine cap structure, a characteristic feature of the U-small nuclear RNAs. Pre-U2 RNA introduced with an adenosine cap (Ap-ppG) also underwent processing, small nuclear ribonucleoprotein assembly, and nuclear accumulation, establishing that a methylated guanosine cap structure is not required for these steps in U2 small nuclear ribonucleprotein biosynthesis. Beyond its demonstrated usefulness in the study of small nuclear ribonucleoprotein biosynthesis, RNA transfection may be of general applicability to the investigation of eukaryotic RNA processing in vivo and may also offer opportunities for introducing therapeutically targeted RNAs (ribozymes or antisense RNA) into cells

Nuclear data for structural materials of fission and fusion reactors

International Nuclear Information System (INIS)

Goulo, V.

1989-06-01

The document presents the status of nuclear reaction theory concerning optical model development, level density models and pre-equilibrium and direct processes used in calculation of neutron nuclear data for structural materials of fission and fusion reactors. 6 refs

Pre-movement planning processes in people with congenital mirror movements.

Science.gov (United States)

Franz, E A; Fu, Y

2017-10-01

Pre-movement processes were investigated in people with Congenital mirrormovement (CMM), a rare disorder in which bilateral movement (mirroring) occurs in the upper distal extremities (primarily the hands and fingers) during intended unilateral movements. Abnormal density of ipsilateral corticospinal projections is an established hallmark of CMM. This study tested whether the Lateralised Readiness Potential (LRP), which reflects movement planning and readiness, is also abnormal in people with CMM. Twenty-eight neurologically-normal controls and 8 people with CMM were tested on a unimanual Go/No-go task while electroencephalography (EEG) was recorded to assess the LRP. No significant group differences were found in reaction time (RT). However, significantly smaller LRP amplitudes were found, on average, in the CMM group compared to Controls at central-motor (C3,C4) sites in stimulus-locked and response-locked epochs; similar group differences were also found at further frontal sites (F3,F4) during response-locked epochs. Abnormal brain activity in pre-movement processes associated with response planning and preparation is present in people with CMM. Aberrant bilateral activity during pre-movement processes is clearly implicated; whether part of the etiology of CMM, or as a mechanism of neuro-compensation, is not yet known. Copyright © 2017 International Federation of Clinical Neurophysiology. Published by Elsevier B.V. All rights reserved.

Viperin mRNA is a novel target for the human RNase MRP/RNase P endoribonuclease.

Science.gov (United States)

Mattijssen, Sandy; Hinson, Ella R; Onnekink, Carla; Hermanns, Pia; Zabel, Bernhard; Cresswell, Peter; Pruijn, Ger J M

2011-07-01

RNase MRP is a conserved endoribonuclease, in humans consisting of a 267-nucleotide RNA associated with 7-10 proteins. Mutations in its RNA component lead to several autosomal recessive skeletal dysplasias, including cartilage-hair hypoplasia (CHH). Because the known substrates of mammalian RNase MRP, pre-ribosomal RNA, and RNA involved in mitochondrial DNA replication are not likely involved in CHH, we analyzed the effects of RNase MRP (and the structurally related RNase P) depletion on mRNAs using DNA microarrays. We confirmed the upregulation of the interferon-inducible viperin mRNA by RNAi experiments and this appeared to be independent of the interferon response. We detected two cleavage sites for RNase MRP/RNase P in the coding sequence of viperin mRNA. This is the first study providing direct evidence for the cleavage of a mRNA by RNase MRP/RNase P in human cells. Implications for the involvement in the pathophysiology of CHH are discussed.

HOXB7 mRNA is overexpressed in pancreatic ductal adenocarcinomas and its knockdown induces cell cycle arrest and apoptosis

International Nuclear Information System (INIS)

Chile, Thais; Bacchella, Telésforo; Giorgi, Ricardo Rodrigues; Fortes, Maria Angela Henriques Zanella; Corrêa-Giannella, Maria Lúcia Cardillo; Brentani, Helena Paula; Maria, Durvanei Augusto; Puga, Renato David; Paula, Vanessa de Jesus R de; Kubrusly, Marcia Saldanha; Novak, Estela Maria

2013-01-01

Human homeobox genes encode nuclear proteins that act as transcription factors involved in the control of differentiation and proliferation. Currently, the role of these genes in development and tumor progression has been extensively studied. Recently, increased expression of HOXB7 homeobox gene (HOXB7) in pancreatic ductal adenocarcinomas (PDAC) was shown to correlate with an invasive phenotype, lymph node metastasis and worse survival outcomes, but no influence on cell proliferation or viability was detected. In the present study, the effects arising from the knockdown of HOXB7 in PDAC cell lines was investigated. Real time quantitative PCR (qRT-PCR) (Taqman) was employed to assess HOXB7 mRNA expression in 29 PDAC, 6 metastatic tissues, 24 peritumoral tissues and two PDAC cell lines. siRNA was used to knockdown HOXB7 mRNA in the cell lines and its consequences on apoptosis rate and cell proliferation were measured by flow cytometry and MTT assay respectively. Overexpression of HOXB7 mRNA was observed in the tumoral tissues and in the cell lines MIA PaCa-2 and Capan-1. HOXB7 knockdown elicited (1) an increase in the expression of the pro-apoptotic proteins BAX and BAD in both cell lines; (2) a decrease in the expression of the anti-apoptotic protein BCL-2 and in cyclin D1 and an increase in the number of apoptotic cells in the MIA PaCa-2 cell line; (3) accumulation of cell in sub-G1 phase in both cell lines; (4) the modulation of several biological processes, especially in MIA PaCa-2, such as proteasomal ubiquitin-dependent catabolic process and cell cycle. The present study confirms the overexpression of HOXB7 mRNA expression in PDAC and demonstrates that decreasing its protein level by siRNA could significantly increase apoptosis and modulate several biological processes. HOXB7 might be a promising target for future therapies

Application of large-scaled pre-cast components for the construction of water intake for a nuclear power plant

International Nuclear Information System (INIS)

Topolnicki, M.

1976-01-01

Problem of the construction of water intake for a 4000 MW nuclear power plant located at the seashore is solved. The advantages of application of large-size pre-cast components are presented,. The constructional solutions and proposed technologies are described in detail. (A.S.)

New nuclear plant design and licensing process

International Nuclear Information System (INIS)

Luangdilok, W.

1996-01-01

This paper describes latest developments in the nuclear power reactor technology with emphasis on three areas: (1) the US technology of advanced passive light water reactors (AP600 and S BWR), (2) regulatory processes that certify their safety, and (3) current engineering concerns. The goal is to provide and insight of how the government's regulatory agency guarantees public safety by looking into how new passive safety features were designed and tested by vendors and how they were re-evaluated and retested by the US NRC. The paper then discusses the US 1989 nuclear licensing reform (10 CFR Part 52) whose objectives are to promote the standardization of nuclear power plants and provide for the early and definitive resolution of site and design issues before plants are built. The new licensing process avoids the unpredictability nd escalated construction cost under the old licensing process. Finally, the paper summarizes engineering concerns found in current light water reactors that may not go away in the new design. The concerns are related the material and water chemistry technology in dealing with corrosion problems in water-cooled nuclear reactor systems (PWRs and BWRs). These engineering concerns include core shroud cracking (BWRs), jet pump hold-down beam cracking (BWRs), steam generator tube stress corrosion cracking (PWR)

Radial pattern of nuclear decay processes

International Nuclear Information System (INIS)

Iskra, W.; Mueller, M.; Rotter, I.; Technische Univ. Dresden

1994-05-01

At high level density of nuclear states, a separation of different time scales is observed (trapping effect). We calculate the radial profile of partial widths in the framework of the continuum shell model for some 1 - resonances with 2p-2h nuclear structure in 16 O as a function of the coupling strength to the continuum. A correlation between the lifetime of a nuclear state and the radial profile of the corresponding decay process is observed. We conclude from our numerical results that the trapping effect creates structures in space and time characterized by a small radial extension and a short lifetime. (orig.)

Image Processing of Welding Procedure Specification and Pre-process program development for Finite Element Modelling

International Nuclear Information System (INIS)

Kim, K. S.; Lee, H. J.

2009-11-01

PRE-WELD program, which generates automatically the input file for the finite element analysis on the 2D butt welding at the dissimilar metal weld part, was developed. This program is pre-process program of the FEM code for analyzing the residual stress at the welding parts. Even if the users have not the detail knowledge for the FEM modelling, the users can make the ABAQUS INPUT easily by inputting the shape data of welding part, the weld current and voltage of welding parameters. By using PRE-WELD program, we can save the time and the effort greatly for preparing the ABAQUS INPUT for the residual stress analysis at the welding parts, and make the exact input without the human error

Energy loss effect in high energy nuclear Drell-Yan process

International Nuclear Information System (INIS)

Duan, C.G.; Song, L.H.; Huo, L.J.; Li, G.L.

2003-01-01

The energy loss effect in nuclear matter, which is a nuclear effect apart from the nuclear effect on the parton distribution as in deep-inelastic scattering process, can be measured best by the nuclear dependence of the high energy nuclear Drell-Yan process. By means of the nuclear parton distribution studied only with lepton deep-inelastic scattering experimental data, the measured Drell-Yan production cross sections for 800 GeV proton incident on a variety of nuclear targets are analyzed within the Glauber framework which takes into account the energy loss of the beam proton. It is shown that the theoretical results with considering the energy loss effect are in good agreement with the FNAL E866 data. (orig.)

Arc mRNA induction in striatal efferent neurons associated with response learning.

Science.gov (United States)

Daberkow, D P; Riedy, M D; Kesner, R P; Keefe, K A

2007-07-01

The dorsal striatum is involved in motor-response learning, but the extent to which distinct populations of striatal efferent neurons are differentially involved in such learning is unknown. Activity-regulated, cytoskeleton-associated (Arc) protein is an effector immediate-early gene implicated in synaptic plasticity. We examined arc mRNA expression in striatopallidal vs. striatonigral efferent neurons in dorsomedial and dorsolateral striatum of rats engaged in reversal learning on a T-maze motor-response task. Male Sprague-Dawley rats learned to turn right or left for 3 days. Half of the rats then underwent reversal training. The remaining rats were yoked to rats undergoing reversal training, such that they ran the same number of trials but ran them as continued-acquisition trials. Brains were removed and processed using double-label fluorescent in situ hybridization for arc and preproenkephalin (PPE) mRNA. In the reversal, but not the continued-acquisition, group there was a significant relation between the overall arc mRNA signal in dorsomedial striatum and the number of trials run, with rats reaching criterion in fewer trials having higher levels of arc mRNA expression. A similar relation was seen between the numbers of PPE(+) and PPE(-) neurons in dorsomedial striatum with cytoplasmic arc mRNA expression. Interestingly, in behaviourally activated animals significantly more PPE(-) neurons had cytoplasmic arc mRNA expression. These data suggest that Arc in both striatonigral and striatopallidal efferent neurons is involved in striatal synaptic plasticity mediating motor-response learning in the T-maze and that there is differential processing of arc mRNA in distinct subpopulations of striatal efferent neurons.

Establishment of the nuclear regulatory framework for the process of decommissioning of nuclear installations in Mexico

International Nuclear Information System (INIS)

Salmeron V, J. A.; Camargo C, R.; Nunez C, A.

2015-09-01

Today has not managed any process of decommissioning of nuclear installations in the country; however because of the importance of the subject and the actions to be taken to long term, the Comision Nacional de Seguridad Nuclear y Salvaguardias (CNSNS) in Mexico, accordance with its objectives is developing a National Nuclear Regulatory Framework and defined requirements to ensure the implementation of appropriate safety standards when such activities are performed. In this regard, the national nuclear regulatory framework for nuclear installations and the particular case of nuclear power reactors is presented, as well as a proposed licensing process for the nuclear power plant of Laguna Verde based on international regulations and origin country regulations of the existing reactors in nuclear facilities in accordance with the license conditions of operation to allow to define and incorporate such regulation. (Author)

NJOY nuclear data processing system: user's manual

International Nuclear Information System (INIS)

MacFarlane, R.E.; Barrett, R.J.; Muir, D.W.; Boicourt, R.M.

1978-12-01

The NJOY nuclear data processing system is a comprehensive computer code package for producing cross sections for neutron and photon transport calculations from ENDF/B-IV and -V evaluated nuclear data. This user's manual provides a concise description of the code, input instructions, sample problems, and installation instructions. 1 figure, 3 tables

Exclusive hadronic and nuclear processes in QCD

International Nuclear Information System (INIS)

Brodsky, S.J.

1985-12-01

Hadronic and nuclear processes are covered, in which all final particles are measured at large invariant masses compared with each other, i.e., large momentum transfer exclusive reactions. Hadronic wave functions in QCD and QCD sum rule constraints on hadron wave functions are discussed. The question of the range of applicability of the factorization formula and perturbation theory for exclusive processes is considered. Some consequences of quark and gluon degrees of freedom in nuclei are discussed which are outside the usual domain of traditional nuclear physics. 44 refs., 7 figs

Increased IL-10 mRNA and IL-23 mRNA expression in multiple sclerosis: interferon-beta treatment increases IL-10 mRNA expression while reducing IL-23 mRNA expression

DEFF Research Database (Denmark)

Krakauer, M.; Sorensen, P.; Khademi, M.

2008-01-01

volunteers served to confirm initial findings. mRNA was analyzed by real-time reverse transcriptase polymerase chain reaction (PCR). RESULTS: We found elevated expression of interleukin (IL)-23 and IL-10 in untreated MS patients. IFN-beta therapy increased IL-10 and decreased IL-23 expression independently...... of the regulatory cytokine IL-10. The elevated IL-23 mRNA levels in MS patients are noteworthy in view of the newly discovered IL-23-driven Th17 T-cell subset, which is crucial in animal models of MS. Since IFN-beta therapy resulted in decreased IL-23 mRNA levels, the Th17 axis could be another target of IFN...

Nucleolin Mediates MicroRNA-directed CSF-1 mRNA Deadenylation but Increases Translation of CSF-1 mRNA*

Science.gov (United States)

Woo, Ho-Hyung; Baker, Terri; Laszlo, Csaba; Chambers, Setsuko K.

2013-01-01

CSF-1 mRNA 3′UTR contains multiple unique motifs, including a common microRNA (miRNA) target in close proximity to a noncanonical G-quadruplex and AU-rich elements (AREs). Using a luciferase reporter system fused to CSF-1 mRNA 3′UTR, disruption of the miRNA target region, G-quadruplex, and AREs together dramatically increased reporter RNA levels, suggesting important roles for these cis-acting regulatory elements in the down-regulation of CSF-1 mRNA. We find that nucleolin, which binds both G-quadruplex and AREs, enhances deadenylation of CSF-1 mRNA, promoting CSF-1 mRNA decay, while having the capacity to increase translation of CSF-1 mRNA. Through interaction with the CSF-1 3′UTR miRNA common target, we find that miR-130a and miR-301a inhibit CSF-1 expression by enhancing mRNA decay. Silencing of nucleolin prevents the miRNA-directed mRNA decay, indicating a requirement for nucleolin in miRNA activity on CSF-1 mRNA. Downstream effects followed by miR-130a and miR-301a inhibition of directed cellular motility of ovarian cancer cells were found to be dependent on nucleolin. The paradoxical effects of nucleolin on miRNA-directed CSF-1 mRNA deadenylation and on translational activation were explored further. The nucleolin protein contains four acidic stretches, four RNA recognition motifs (RRMs), and nine RGG repeats. All three domains in nucleolin regulate CSF-1 mRNA and protein levels. RRMs increase CSF-1 mRNA, whereas the acidic and RGG domains decrease CSF-1 protein levels. This suggests that nucleolin has the capacity to differentially regulate both CSF-1 RNA and protein levels. Our finding that nucleolin interacts with Ago2 indirectly via RNA and with poly(A)-binding protein C (PABPC) directly suggests a nucleolin-Ago2-PABPC complex formation on mRNA. This complex is in keeping with our suggestion that nucleolin may work with PABPC as a double-edged sword on both mRNA deadenylation and translational activation. Our findings underscore the complexity of

Facing the challenge of nuclear mass tort processing

International Nuclear Information System (INIS)

Pelzer, Norbert

2017-01-01

A great majority of states do not issue any specific legislation on nuclear mass tort litigations. They apparently build on general traditional practice as most probably already tried and tested in other areas. Some states defer the decision on the way to deal with mass tort claims to the time of the nuclear incident. They insert into their nuclear liability laws respective 'reminders' that contain an invitation or a demand to the legislator to take appropriate steps if and when necessary. Finally, there are a number of states that enacted elaborate regimes on how to react to, and organise, compensation of mass damages after a catastrophic nuclear incident. Among those states are in particular major nuclear states like Canada, India, Japan and the US. They developed compensation schemes where claims for compensation of nuclear damage shall be dealt with by fora that are not regular courts. In some of those states, the fora are exclusively competent without a right to appeal their decisions, while in other states the fora act in parallel or in complement to courts. So the international scenario appears to be somewhat confusing. Of course, sovereign states are free to organise claims processing, including nuclear mass claims processing, as they deem fit. The discretion of states is, however, limited by obligations under public international law. With regard to the victims of nuclear incidents, states are particularly bound by obligations under the 1948 Universal Declaration of Human Rights and other relevant instruments they may be a party to. National nuclear mass claim processing has in particular to comply with the obligation to guarantee 'a fair and public hearing by an independent and impartial tribunal'. With regard to possible international obligations vis-a-vis other states, it has to be taken into account that major nuclear incidents, as a rule, have transboundary detrimental effects. There is always a potential impact on territories

Applicability of vector processing to large-scale nuclear codes

International Nuclear Information System (INIS)

Ishiguro, Misako; Harada, Hiroo; Matsuura, Toshihiko; Okuda, Motoi; Ohta, Fumio; Umeya, Makoto.

1982-03-01

To meet the growing trend of computational requirements in JAERI, introduction of a high-speed computer with vector processing faculty (a vector processor) is desirable in the near future. To make effective use of a vector processor, appropriate optimization of nuclear codes to pipelined-vector architecture is vital, which will pose new problems concerning code development and maintenance. In this report, vector processing efficiency is assessed with respect to large-scale nuclear codes by examining the following items: 1) The present feature of computational load in JAERI is analyzed by compiling the computer utilization statistics. 2) Vector processing efficiency is estimated for the ten heavily-used nuclear codes by analyzing their dynamic behaviors run on a scalar machine. 3) Vector processing efficiency is measured for the other five nuclear codes by using the current vector processors, FACOM 230-75 APU and CRAY-1. 4) Effectiveness of applying a high-speed vector processor to nuclear codes is evaluated by taking account of the characteristics in JAERI jobs. Problems of vector processors are also discussed from the view points of code performance and ease of use. (author)

The road to MYRRHA. The pre-licensing phase and FEED

International Nuclear Information System (INIS)

2014-01-01

The article discusses the study phase of the future research reactor MYRRHA. This study phase covers three major areas: Research and Development, licensing and engineering. In 2013, substantial progress was made in the licensing and engineering processes: licensing is currently in the pre-licensing phase, while, for engineering, the Front-end Engineering and Design (FEED) contract was signed for the construction of the non-nuclear parts of MYRRHA. The article highlights work associated with the the pre-licensing phase and the FEED.

An RNA-binding protein, Qki5, regulates embryonic neural stem cells through pre-mRNA processing in cell adhesion signaling.

Science.gov (United States)

Hayakawa-Yano, Yoshika; Suyama, Satoshi; Nogami, Masahiro; Yugami, Masato; Koya, Ikuko; Furukawa, Takako; Zhou, Li; Abe, Manabu; Sakimura, Kenji; Takebayashi, Hirohide; Nakanishi, Atsushi; Okano, Hideyuki; Yano, Masato

2017-09-15

Cell type-specific transcriptomes are enabled by the action of multiple regulators, which are frequently expressed within restricted tissue regions. In the present study, we identify one such regulator, Quaking 5 (Qki5), as an RNA-binding protein (RNABP) that is expressed in early embryonic neural stem cells and subsequently down-regulated during neurogenesis. mRNA sequencing analysis in neural stem cell culture indicates that Qki proteins play supporting roles in the neural stem cell transcriptome and various forms of mRNA processing that may result from regionally restricted expression and subcellular localization. Also, our in utero electroporation gain-of-function study suggests that the nuclear-type Qki isoform Qki5 supports the neural stem cell state. We next performed in vivo transcriptome-wide protein-RNA interaction mapping to search for direct targets of Qki5 and elucidate how Qki5 regulates neural stem cell function. Combined with our transcriptome analysis, this mapping analysis yielded a bona fide map of Qki5-RNA interaction at single-nucleotide resolution, the identification of 892 Qki5 direct target genes, and an accurate Qki5-dependent alternative splicing rule in the developing brain. Last, our target gene list provides the first compelling evidence that Qki5 is associated with specific biological events; namely, cell-cell adhesion. This prediction was confirmed by histological analysis of mice in which Qki proteins were genetically ablated, which revealed disruption of the apical surface of the lateral wall in the developing brain. These data collectively indicate that Qki5 regulates communication between neural stem cells by mediating numerous RNA processing events and suggest new links between splicing regulation and neural stem cell states. © 2017 Hayakawa-Yano et al.; Published by Cold Spring Harbor Laboratory Press.

Conserved CPEs in the p53 3' untranslated region influence mRNA stability and protein synthesis

DEFF Research Database (Denmark)

Rosenstierne, Maiken W; Vinther, Jeppe; Mittler, Gerhard

2008-01-01

CaT skin and MCF-7 breast cancer cell lines were established. Quantitative PCR and an enzymatic assay were used to quantify the reporter mRNA and protein levels, respectively. Proteins binding to the CPEs were identified by RNA-immunoprecipitation (IP) and quantitative mass spectroscopy. RESULTS: The wild...... irradiation. Several proteins (including GAPDH, heterogeneous nuclear ribonucleoprotein (hnRNP) D and A/B) were identified from the MCF-7 cytoplasmic extracts that bound specifically to the CPEs. CONCLUSION: Two conserved CPEs in the p53 3'UTR regulate stability and translation of a reporter mRNA in non...

Corrosion surveillance of the chemical decontamination process in Kuosheng nuclear power plant

International Nuclear Information System (INIS)

Wang, L.H.

2002-01-01

The Piping Recirculation System (RRS) and reactor water clean-up system (RWCU) of Kuosheng Nuclear Power Plant of Taiwan Power Company were decontaminated by CORD process of Framatome ANP GmbH during the outage at October 2001. This is the first time that CORD process was adopted and applied in Taiwan Nuclear Power Plant. To verify minor corrosion damage and correct process control, the material corrosion condition was monitored during all the stages of the chemical decontamination work. Three kinds of specimen were adopted in this corrosion monitoring, including corrosion coupons for weight loss measurements, electrochemical specimens for on-line corrosion monitoring, and WOL specimens (wedge opening loaded) for stress corrosion evaluation. The measured metal losses from nine coupon materials did not reveal any unexpected or intolerable high corrosion damage from the CORD UV or CORD CS processes. The coupon materials included type 304 stainless steel (SS) with sensitized and as-received thermal history, type 308 weld filler, type CF8 cast SS, nickel base alloy 182 weld filler, Inconel 600, Stellite 6 hard facing alloy, NOREM low cobalt hard facing alloy, and A106B carbon steel (CS). The electrochemical noise (ECN) measurements from three-electrode electrochemical probe precisely depicted the metal corrosion variation with the decontamination process change. Most interestingly, the estimated trend of accumulated metal loss is perfectly corresponding to the total removed activities. The ECN measurements were also used for examining the effect of different SS oxide films pre-formed in NWC and HWC on the decontamination efficiency, and for evaluating the galvanic effect of CS with SS. The existing cracks did not propagate further during the decontamination. The average decontamination factors achieved were 50.8 and 4.2 respectively for RRS and RWCU. (authors)

DUPIC nuclear fuel manufacturing and process technology development

International Nuclear Information System (INIS)

Yang, Myung Seung; Park, J. J.; Lee, J. W.

2000-05-01

In this study, DUPIC fuel fabrication technology and the active fuel laboratory were developed for the study of spent nuclear fuel. A new nuclear fuel using highly radioactive nuclear materials can be studied at the active fuel laboratory. Detailed DUPIC fuel fabrication process flow was developed considering the manufacturing flow, quality control process and material accountability. The equipment layout of about twenty DUPIC equipment at IMEF M6 hot cell was established for the minimization of the contamination during DUPIC processes. The characteristics of the SIMFUEL powder and pellets was studied in terms of milling conditions. The characteristics of DUPIC powder and pellet was studied by using 1 kg of spent PWR fuel at PIEF nr.9405 hot cell. The results were used as reference process conditions for following DUPIC fuel fabrication at IMEF M6. Based on the reference fabrication process conditions, the main DUPIC pellet fabrication campaign has been started at IMEF M6 using 2 kg of spent PWR fuel since 2000 January. As of March 2000, about thirty DUPIC pellets were successfully fabricated

DUPIC nuclear fuel manufacturing and process technology development

Energy Technology Data Exchange (ETDEWEB)

Yang, Myung Seung; Park, J. J.; Lee, J. W. [and others

2000-05-01

In this study, DUPIC fuel fabrication technology and the active fuel laboratory were developed for the study of spent nuclear fuel. A new nuclear fuel using highly radioactive nuclear materials can be studied at the active fuel laboratory. Detailed DUPIC fuel fabrication process flow was developed considering the manufacturing flow, quality control process and material accountability. The equipment layout of about twenty DUPIC equipment at IMEF M6 hot cell was established for the minimization of the contamination during DUPIC processes. The characteristics of the SIMFUEL powder and pellets was studied in terms of milling conditions. The characteristics of DUPIC powder and pellet was studied by using 1 kg of spent PWR fuel at PIEF nr.9405 hot cell. The results were used as reference process conditions for following DUPIC fuel fabrication at IMEF M6. Based on the reference fabrication process conditions, the main DUPIC pellet fabrication campaign has been started at IMEF M6 using 2 kg of spent PWR fuel since 2000 January. As of March 2000, about thirty DUPIC pellets were successfully fabricated.

Statistical features of pre-compound processes in nuclear reactions

International Nuclear Information System (INIS)

Hussein, M.S.; Rego, R.A.

1983-04-01

Several statistical aspects of multistep compound processes are discussed. The connection between the cross-section auto-correlation function and the average number of maxima is emphasized. The restrictions imposed by the non-zero value of the energy step used in measuring the excitation fuction and the experimental error are discussed. Applications are made to the system 25 Mg( 3 He,p) 27 Al. (Author) [pt

Handbook on process and chemistry on nuclear fuel reprocessing

Energy Technology Data Exchange (ETDEWEB)

Suzuki, Atsuyuki [Tokyo Univ., Tokyo (Japan); Asakura, Toshihide; Adachi, Takeo [Japan Atomic Energy Research Inst., Tokai, Ibaraki (Japan). Tokai Research Establishment; and others

2001-12-01

'Wet-type' nuclear fuel reprocessing technology, based on PUREX technology, has wide applicability as the principal reprocessing technology of the first generation, and relating technologies, waste management for example, are highly developed, too. It is quite important to establish a database summarizing fundamental information about the process and the chemistry of 'wet-type' reprocessing, because it contributes to establish and develop fuel reprocessing process and nuclear fuel cycle treating high burn-up UO{sub 2} fuel and spent MOX fuel, and to utilize 'wet-type' reprocessing technology much widely. This handbook summarizes the fundamental data on process and chemistry, which was collected and examined by 'Editing Committee of Handbook on Process and Chemistry of Nuclear Fuel Reprocessing', from FY 1993 until FY 2000. (author)

Handbook on process and chemistry on nuclear fuel reprocessing

International Nuclear Information System (INIS)

Suzuki, Atsuyuki; Asakura, Toshihide; Adachi, Takeo

2001-12-01

'Wet-type' nuclear fuel reprocessing technology, based on PUREX technology, has wide applicability as the principal reprocessing technology of the first generation, and relating technologies, waste management for example, are highly developed, too. It is quite important to establish a database summarizing fundamental information about the process and the chemistry of 'wet-type' reprocessing, because it contributes to establish and develop fuel reprocessing process and nuclear fuel cycle treating high burn-up UO 2 fuel and spent MOX fuel, and to utilize 'wet-type' reprocessing technology much widely. This handbook summarizes the fundamental data on process and chemistry, which was collected and examined by 'Editing Committee of Handbook on Process and Chemistry of Nuclear Fuel Reprocessing', from FY 1993 until FY 2000. (author)

Nuclear fuel re-processing plant

International Nuclear Information System (INIS)

Sasaki, Yuko; Honda, Takashi; Shoji, Saburo; Kobayashi, Shiro; Furuya, Yasumasa

1989-01-01

In a nuclear fuel re-processing plant, high Si series stainless steels not always have sufficient corrosion resistance in a solution containing only nitric acid at medium or high concentration. Further, a method of blowing NOx gases may possibly promote the corrosion of equipment constituent materials remarkably. In view of the above, the corrosion promoting effect of nuclear fission products is suppressed without depositing corrosive metal ions as metals in the nitric acid solution. That is, a reducing atmosphere is formed by generating NOx by electrolytic reduction thereby preventing increase in the surface potential of stainless steels. Further, an anode is disposed in the nitric acid solution containing oxidative metal ions to establish an electrical conduction and separate them by way of partition membranes and a constant potential or constant current is applied while maintaining an ionic state so as not to deposit metals. Thus, equipments of re-processing facility can be protected from corrosion with no particular treatment for wastes as radioactive materials. (K.M.)

Technical and economic benefits of nuclear techniques in ore processing

International Nuclear Information System (INIS)

1989-08-01

This report is the outcome of an Advisory Group Meeting organized by the Agency and hosted by the Institute of Physics and Nuclear Techniques, the Academy of Mining and Metallurgy in Krakow, Poland. The purpose of the meeting was to assess the technical and economic benefits of applying nuclear techniques in ore processing industry. Nucleonic control systems and nuclear on-line analytical techniques as well as radioisotope tracer tests and their applications in metallic ore-processing, coal production, and cement fabrication were discussed. This report contains a summary and the presentations dealing with nuclear techniques for process control made at this meeting. Using a number of case-histories as examples, it illustrates technical and economic benefits obtainable by the installation of nuclear process control instrumentation. It is expected to be useful for everybody dealing with ore and coal production, but especially for administrative personnel and engineers who plan and implement national development programmes related to mineral resources. Refs, figs and tabs

Analytical methodology for optimization of waste management scenarios in nuclear installation decommissioning process - 16148

International Nuclear Information System (INIS)

Zachar, Matej; Necas, Vladimir; Daniska, Vladimir; Rehak, Ivan; Vasko, Marek

2009-01-01

The nuclear installation decommissioning process is characterized by production of large amount of various radioactive and non-radioactive waste that has to be managed, taking into account its physical, chemical, toxic and radiological properties. Waste management is considered to be one of the key issues within the frame of the decommissioning process. During the decommissioning planning period, the scenarios covering possible routes of materials release into the environment and radioactive waste disposal, should be discussed and evaluated. Unconditional and conditional release to the environment, long-term storage at the nuclear site, near surface or deep geological disposal and relevant material management techniques for achieving the final status should be taken into account in the analysed scenarios. At the level of the final decommissioning plan, it is desirable to have the waste management scenario optimized for local specific facility conditions taking into account a national decommissioning background. The analytical methodology for the evaluation of decommissioning waste management scenarios, presented in the paper, is based on the materials and radioactivity flow modelling, which starts from waste generation activities like pre-dismantling decontamination, selected methods of dismantling, waste treatment and conditioning, up to materials release or conditioned radioactive waste disposal. The necessary input data for scenarios, e.g. nuclear installation inventory database (physical and radiological data), waste processing technologies parameters or material release and waste disposal limits, have to be considered. The analytical methodology principles are implemented into the standardised decommissioning parameters calculation code OMEGA, developed in the DECOM company. In the paper the examples of the methodology implementation for the scenarios optimization are presented and discussed. (authors)

Thirteen international workshop on nuclear theory. Abstracts

International Nuclear Information System (INIS)

1994-01-01

This brochure contains the abstracts of reports delivered by 40 participants at the 13. International Workshop on Nuclear Theory organized by the Nuclear Theory Group in the Institute for Nuclear research and Nuclear Energy of the Bulgarian academy of Sciences. The main topics treated in the lectures were nucleon correlation effects in nuclei, collective nuclear motions, Wigner quantum systems, pre-equilibrium neutron and photon emission from nuclei, particle-nuclei collision processes at high energies, few-body states, optical potential for neutron-nucleus scattering, relativistic generator coordinate calculations and variational nuclear structure calculations. All reports are included in INIS separately

Importance of the licensing process on the safety culture in the Brazilian nuclear fuel cycle facilities

International Nuclear Information System (INIS)

Motta, E.S.; Sousa, A.L.B. de; Paiva, R.L.C. de; Mezrahi, A.

2013-01-01

The main objective of the Nuclear Fuel Cycle Facilities licensing processes is to ensure the safety of these installations in their entire life cycle (in the installation site selection, designing, construction, pre-operational tests, operational and decommissioning phases). The Brazilian licensing process requires from the operator, among others, before the operating license: (I) a Site Report and a Final Safety Analysis Report, ensuring that all safety related issues are adequately analyzed and understood; (II) a formal structured Management System focused on the installation safety; and (III) dissemination of safety related information to all involved operator employees and subcontractors. Therefore, these requirements reflect in an adequate operator actions and practices, ensuring a working environment with a high level of safety culture. (author)

Importance of the licensing process on the safety culture in the Brazilian nuclear fuel cycle facilities

Energy Technology Data Exchange (ETDEWEB)

Motta, E.S.; Sousa, A.L.B. de; Paiva, R.L.C. de; Mezrahi, A., E-mail: emotta@cnen.gov.br [Comissao Nacional de Energia Nuclear (CNEN-RJ), Rio de Janeiro, RJ (Brazil)

2013-07-01

The main objective of the Nuclear Fuel Cycle Facilities licensing processes is to ensure the safety of these installations in their entire life cycle (in the installation site selection, designing, construction, pre-operational tests, operational and decommissioning phases). The Brazilian licensing process requires from the operator, among others, before the operating license: (I) a Site Report and a Final Safety Analysis Report, ensuring that all safety related issues are adequately analyzed and understood; (II) a formal structured Management System focused on the installation safety; and (III) dissemination of safety related information to all involved operator employees and subcontractors. Therefore, these requirements reflect in an adequate operator actions and practices, ensuring a working environment with a high level of safety culture. (author)

The effect of dilute acid pre-treatment process in bioethanol production from durian (Durio zibethinus) seeds waste

Science.gov (United States)

Ghazali, K. A.; Salleh, S. F.; Riayatsyah, T. M. I.; Aditiya, H. B.; Mahlia, T. M. I.

2016-03-01

Lignocellulosic biomass is one of the promising feedstocks for bioethanol production. The process starts from pre-treatment, hydrolysis, fermentation, distillation and finally obtaining the final product, ethanol. The efficiency of enzymatic hydrolysis of cellulosic biomass depends heavily on the effectiveness of the pre-treatment step which main function is to break the lignin structure of the biomass. This work aims to investigate the effects of dilute acid pre-treatment on the enzymatic hydrolysis of durian seeds waste to glucose and the subsequent bioethanol fermentation process. The yield of glucose from dilute acid pre-treated sample using 0.6% H2SO4 and 5% substrate concentration shows significant value of 23.4951 g/L. Combination of dilute acid pre-treatment and enzymatic hydrolysis using 150U of enzyme able to yield 50.0944 g/L of glucose content higher compared to normal pre-treated sample of 8.1093 g/L. Dilute acid pre-treatment sample also shows stable and efficient yeast activity during fermentation process with lowest glucose content at 2.9636 g/L compared to 14.7583g/L for normal pre-treated sample. Based on the result, it can be concluded that dilute acid pre-treatment increase the yield of ethanol from bioethanol production process.

Process for producing nuclear reactor fuel oxides

International Nuclear Information System (INIS)

Goenrich, H.; Druckenbrodt, W.G.

1981-01-01

The waste gases of the calcination process furnace in the AVC or AV/PuC process (manufacture of nuclear reactor fuel dioxides) are returned to the furnace in a closed circuit. The NH 3 produced replaces the hydrogen which would otherwise be required for reduction in this process. (orig.) [de

Handbook on process and chemistry on nuclear fuel reprocessing

Energy Technology Data Exchange (ETDEWEB)

Suzuki, Atsuyuki (ed.) [Tokyo Univ., Tokyo (Japan); Asakura, Toshihide; Adachi, Takeo (eds.) [Japan Atomic Energy Research Inst., Tokai, Ibaraki (Japan). Tokai Research Establishment] [and others

2001-12-01

'Wet-type' nuclear fuel reprocessing technology, based on PUREX technology, has wide applicability as the principal reprocessing technology of the first generation, and relating technologies, waste management for example, are highly developed, too. It is quite important to establish a database summarizing fundamental information about the process and the chemistry of 'wet-type' reprocessing, because it contributes to establish and develop fuel reprocessing process and nuclear fuel cycle treating high burn-up UO{sub 2} fuel and spent MOX fuel, and to utilize 'wet-type' reprocessing technology much widely. This handbook summarizes the fundamental data on process and chemistry, which was collected and examined by 'Editing Committee of Handbook on Process and Chemistry of Nuclear Fuel Reprocessing', from FY 1993 until FY 2000. (author)

Reproducible cancer biomarker discovery in SELDI-TOF MS using different pre-processing algorithms.

Directory of Open Access Journals (Sweden)

Jinfeng Zou

Full Text Available BACKGROUND: There has been much interest in differentiating diseased and normal samples using biomarkers derived from mass spectrometry (MS studies. However, biomarker identification for specific diseases has been hindered by irreproducibility. Specifically, a peak profile extracted from a dataset for biomarker identification depends on a data pre-processing algorithm. Until now, no widely accepted agreement has been reached. RESULTS: In this paper, we investigated the consistency of biomarker identification using differentially expressed (DE peaks from peak profiles produced by three widely used average spectrum-dependent pre-processing algorithms based on SELDI-TOF MS data for prostate and breast cancers. Our results revealed two important factors that affect the consistency of DE peak identification using different algorithms. One factor is that some DE peaks selected from one peak profile were not detected as peaks in other profiles, and the second factor is that the statistical power of identifying DE peaks in large peak profiles with many peaks may be low due to the large scale of the tests and small number of samples. Furthermore, we demonstrated that the DE peak detection power in large profiles could be improved by the stratified false discovery rate (FDR control approach and that the reproducibility of DE peak detection could thereby be increased. CONCLUSIONS: Comparing and evaluating pre-processing algorithms in terms of reproducibility can elucidate the relationship among different algorithms and also help in selecting a pre-processing algorithm. The DE peaks selected from small peak profiles with few peaks for a dataset tend to be reproducibly detected in large peak profiles, which suggests that a suitable pre-processing algorithm should be able to produce peaks sufficient for identifying useful and reproducible biomarkers.

Effect of PCB 126 on aryl hydrocarbon receptor 1 (AHR1) and AHR1 nuclear translocator 1 (ARNT1) mRNA expression and CYP1 monooxygenase activity in chicken (Gallus domesticus) ovarian follicles.

Science.gov (United States)

Wójcik, Dagmara; Antos, Piotr A; Katarzyńska, Dorota; Hrabia, Anna; Sechman, Andrzej

2015-12-03

The aim of the experiment was to study the in vitro effect of 3,3',4,4',5-pentachlorobiphenyl (PCB 126; a coplanar PCB congener) on aryl hydrocarbon receptor (AHR1) and AHR1 nuclear translocator (ARNT1) mRNA expression and the activity of CYP1 family monooxygenases in chicken ovarian follicles. White (1-4 mm) and yellowish (4-8 mm) prehierarchical follicles as well as fragments of the theca and granulosa layers of the 3 largest preovulatory follicles (F3-F1) were incubated in a medium supplemented with 0 (control group), 1, 10 or 100 nM PCB 126. The incubation was carried out for 6 h or 24 h for determination of mRNA expression of AHR1 and ARNT1 genes (real-time qPCR) and CYP1 monooxygenase activity (EROD and MROD fluorometric assays), respectively. It was found that chicken ovarian follicles express mRNA of AHR1 and ARNT1 genes. A modulatory effect of PCB 126 on AHR1 and ARNT1 expression depended not only on the biphenyl concentration but also on the follicular layer and the maturational state of the follicle. EROD and MROD activities appeared predominantly in the granulosa layer of the yellow preovulatory follicles. PCB 126 induced these activities in a dose-dependent manner in all ovarian follicles. The obtained results suggest that ovarian follicles, especially the granulosa layer, are involved in the detoxification process of PCBs in the laying hen. Taking this finding into consideration it can be suggested that the granulosa layer of the yellow hierarchical follicles plays a key role in the protective mechanism which reduces the amount of transferred dioxin-like compounds into the yolk of the oocyte. Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

Data pre-processing: a case study in predicting student's retention in ...

African Journals Online (AJOL)

dataset with features that are ready for data mining task. The study also proposed a process model and suggestions, which can be applied to support more comprehensible tools for educational domain who is the end user. Subsequently, the data pre-processing become more efficient for predicting student's retention in ...

Nuclear Data Processing for Generation of Stainless Steel Cross-Sections Data

International Nuclear Information System (INIS)

Suwoto; Zuhair

2007-01-01

Stainless steel has been used as important material in nuclear reactor and also in non nuclear industries. Nuclear data processing for generation of composite mixture cross-sections from several nuclides have been made. Provided evaluated nuclear data file (ENDF) such as ENDF/B- VI.8, JEFF-3.1 and JENDL-3.3 files were employed. Raw nuclear data cross-sections on file ENDF should be prepared and processed before it used in calculation. Sequence of nuclear data processing for generation of mixture cross-sections data from several nuclides is started from LINEAR, RECENT, SIGMA1 and MIXER codes taken from PREPR02000 utility code. Nuclear data processing is started from linearization of nuclear cross-sections data by using LINEAR code and counting background contribution of resonance parameter (MF2) with RECENT code (0 K) at energy ranges from 10 -5 to 10 7 eV. Afterward, the neutron cross-sections data should be processed and broadened to desire temperature (300 K) by using SIGMA1 code. Consistency of each cross-sections which used in nuclear data processing is checked and verified using FIXUP code. The next step is to define the composite mixture density (gr/cm 3 ) of stainless steel SUS-310 and weight fraction of each nuclide composition prior used it in MIXER code. All of the stainless steel SUS-310 cross sections are condensed to 650 energy groups structure (TART-energy structure) by using GROUPIE code to evaluate, analysis and review it more easily. The total, elastic scattering, non-elastic scattering and capture cross- sections of stainless steel SUS-310 have been made of ENDF/B-VI.8, JEFF-3.1 and JENDL-3.3 files. The stainless steel cross-sections made of ENDF/B- VI.8 file was taken as reference during validation process. The validation result of total cross-sections for stainless steel SUS-310 is clearly observed that the differences of total cross-sections error in nuclear data processing is relatively low than 0.01%. (author)

Fuel production from coal by the Mobil Oil process using nuclear high-temperature process heat

International Nuclear Information System (INIS)

Hoffmann, G.

1982-01-01

Two processes for the production of liquid hydrocarbons are presented: Direct conversion of coal into fuel (coal hydrogenation) and indirect conversion of coal into fuel (syngas production, methanol synthesis, Mobil Oil process). Both processes have several variants in which nuclear process heat may be used; in most cases, the nuclear heat is introduced in the gas production stage. The following gas production processes are compared: LURGI coal gasification process; steam reformer methanation, with and without coal hydrogasification and steam gasification of coal. (orig./EF) [de

PNRA Process for Utilizing Experience Feedback for Enhancing Nuclear Safety

International Nuclear Information System (INIS)

Shah, Z.H.

2016-01-01

One of the elements essential for any organization to become a learning organization is to learn from its own and others experience. The importance of utilizing experience feedback for enhancing operational safety is highlighted in nuclear industry again and again and this has resulted in establishment of several national and international forums. In addition, IAEA action plan on nuclear safety issued after Fukushima accident further highlighted the importance of experience sharing among nuclear community to enhance global nuclear safety regime. PNRA utilizes operating experience feedback gathered through different sources in order to improve its regulatory processes. During the review of licensing submissions, special emphasis is given to utilize the lessons learnt from experience feedback relating to nuclear industry within and outside the country. This emphasis has gradually resulted in various safety improvements in the facilities and processes. Accordingly, PNRA has developed a systematic process of evaluation of international operating experience feedback with the aim to create safety conscious approach. This process includes collecting information from different international forums such as IAEA, regulatory bodies of other countries and useful feedback of past accidents followed by its screening, evaluation and suggesting recommendations both for PNRA and its licensees. As a result of this process, several improvements concerning regulatory inspection plans of PNRA as well as in regulatory decision making and operational practices of licensees have been highlighted. This paper will present PNRA approach for utilizing experience feedback in its regulatory processes for enhancing / improving nuclear safety. (author)

Development process and achievements of China nuclear agricultural sciences

International Nuclear Information System (INIS)

Wen Xianfang

2009-01-01

This paper outlines the creation of our nuclear agricultural sciences and the development process as well as the main results for agricultural applications of nuclear technology. Nuclear agricultural sciences in China began in 1956, after 50 years of development, the collaborative research network, the academic exchange network, and the international exchange network have been formatted. These three networks comprehensively have promoted the formation and development of China nuclear agricultural sciences. Remarkable results have been achieved in the fields of radiation mutation breeding, space mutation breeding, isotope tracer technique application in agriculture, agricultural products storage and preservation of irradiation processing, irradiation sterile insect technique, low-doses of radiation to stimulate output. In addition, the concept of suggestions on the future development of China nuclear agricultural sciences, as well as the priorities of research fields are put forward. (authors)

Gasification of coal making use of nuclear processing heat

International Nuclear Information System (INIS)

Schilling, H.D.; Bonn, B.; Krauss, U.

1981-01-01

In the chapter 'Gasification of coal making use of nuclear processing heat', the steam gasification of brown coal and bituminous coal, the hydrogenating gasification of brown coal including nuclear process heat either by steam cracking methane in the steam reformer or by preheating the gasifying agent, as well as the hydrogenating gasification of bituminous coal are described. (HS) [de

Summary of ENDF/B Pre-Processing Codes June 1983

International Nuclear Information System (INIS)

Cullen, D.E.

1983-06-01

This is the summary documentation for the 1983 version of the ENDF/B Pre-Processing Codes LINEAR, RECENT, SIGMA1, GROUPIE, EVALPLOT, MERGER, DICTION, COMPLOT, CONVERT. This summary documentation is merely a copy of the comment cards that appear at the beginning of each programme; these comment cards always reflect the latest status of input options, etc

Quark Energy Loss and Shadowing in Nuclear Drell-Yan Process

Institute of Scientific and Technical Information of China (English)

DUAN Chun-Gui; CUI Shu-Wen; YAN Zhan-Yuan

2005-01-01

The energy loss effect in nuclear matter is another nuclear effect apart from the nuclear effects on the parton distribution as in deep inelastic scattering process. The quark energy loss can be measured best by the nuclear dependence of the high energy nuclear Drell-Yan process. By means of three kinds of quark energy loss parameterizations given in literature and the nuclear parton distribution extracted only with lepton-nucleus deep inelastic scattering experimental data, measured Drell-Yan production cross sections are analyzed for 800 GeV proton incident on a variety of nuclear targets from FNAL E866. It is shown that our results with considering the energy loss effect are much different from those of the FNAL E866, who analyzes the experimental data with the nuclear parton distribution functions obtained by using the deep inelastic IA collisions and pA nuclear Drell-Yan data. Considering the existence of energy loss effect in Drell-Yan lepton pairs production, we suggest that the extraction of nuclear parton distribution functions should not include Drell-Yan experimental data.

Quark Energy Loss and Shadowing in Nuclear Drell-Yan Process

International Nuclear Information System (INIS)

Duan Chungui; Cui Shuwen; Yan Zhanyuan

2005-01-01

The energy loss effect in nuclear matter is another nuclear effect apart from the nuclear effects on the parton distribution as in deep inelastic scattering process. The quark energy loss can be measured best by the nuclear dependence of the high energy nuclear Drell-Yan process. By means of three kinds of quark energy loss parameterizations given in literature and the nuclear parton distribution extracted only with lepton-nucleus deep inelastic scattering experimental data, measured Drell-Yan production cross sections are analyzed for 800 GeV proton incident on a variety of nuclear targets from FNAL E866. It is shown that our results with considering the energy loss effect are much different from those of the FNAL E866, who analyzes the experimental data with the nuclear parton distribution functions obtained by using the deep inelastic lA collisions and pA nuclear Drell-Yan data. Considering the existence of energy loss effect in Drell-Yan lepton pairs production, we suggest that the extraction of nuclear parton distribution functions should not include Drell-Yan experimental data.

Managing the high level waste nuclear regulatory commission licensing process

International Nuclear Information System (INIS)

Baskin, K.P.

1992-01-01

This paper reports that the process for obtaining Nuclear Regulatory Commission permits for the high level waste storage facility is basically the same process commercial nuclear power plants followed to obtain construction permits and operating licenses for their facilities. Therefore, the experience from licensing commercial reactors can be applied to the high level waste facility. Proper management of the licensing process will be the key to the successful project. The management of the licensing process was categorized into four areas as follows: responsibility, organization, communication and documentation. Drawing on experience from nuclear power plant licensing and basic management principles, the management requirement for successfully accomplishing the project goals are discussed

Secure Software Configuration Management Processes for nuclear safety software development environment

International Nuclear Information System (INIS)

Chou, I.-Hsin

2011-01-01

Highlights: → The proposed method emphasizes platform-independent security processes. → A hybrid process based on the nuclear SCM and security regulations is proposed. → Detailed descriptions and Process Flow Diagram are useful for software developers. - Abstract: The main difference between nuclear and generic software is that the risk factor is infinitely greater in nuclear software - if there is a malfunction in the safety system, it can result in significant economic loss, physical damage or threat to human life. However, secure software development environment have often been ignored in the nuclear industry. In response to the terrorist attacks on September 11, 2001, the US Nuclear Regulatory Commission (USNRC) revised the Regulatory Guide (RG 1.152-2006) 'Criteria for use of computers in safety systems of nuclear power plants' to provide specific security guidance throughout the software development life cycle. Software Configuration Management (SCM) is an essential discipline in the software development environment. SCM involves identifying configuration items, controlling changes to those items, and maintaining integrity and traceability of them. For securing the nuclear safety software, this paper proposes a Secure SCM Processes (S 2 CMP) which infuses regulatory security requirements into proposed SCM processes. Furthermore, a Process Flow Diagram (PFD) is adopted to describe S 2 CMP, which is intended to enhance the communication between regulators and developers.

Application of probabilistic risk assessment in nuclear and environmental licensing processes of nuclear reactors in Brazil

International Nuclear Information System (INIS)

Mata, Jonatas F.C. da; Vasconcelos, Vanderley de; Mesquita, Amir Z.

2015-01-01

The nuclear accident at Fukushima Daiichi, occurred in Japan in 2011, brought reflections, worldwide, on the management of nuclear and environmental licensing processes of existing nuclear reactors. One of the key lessons learned in this matter, is that the studies of Probabilistic Safety Assessment and Severe Accidents are becoming essential, even in the early stage of a nuclear development project. In Brazil, Brazilian Nuclear Energy Commission, CNEN, conducts the nuclear licensing. The organism responsible for the environmental licensing is Brazilian Institute of Environment and Renewable Natural Resources, IBAMA. In the scope of the licensing processes of these two institutions, the safety analysis is essentially deterministic, complemented by probabilistic studies. The Probabilistic Safety Assessment (PSA) is the study performed to evaluate the behavior of the nuclear reactor in a sequence of events that may lead to the melting of its core. It includes both probability and consequence estimation of these events, which are called Severe Accidents, allowing to obtain the risk assessment of the plant. Thus, the possible shortcomings in the design of systems are identified, providing basis for safety assessment and improving safety. During the environmental licensing, a Quantitative Risk Analysis (QRA), including probabilistic evaluations, is required in order to support the development of the Risk Analysis Study, the Risk Management Program and the Emergency Plan. This article aims to provide an overview of probabilistic risk assessment methodologies and their applications in nuclear and environmental licensing processes of nuclear reactors in Brazil. (author)

Application of probabilistic risk assessment in nuclear and environmental licensing processes of nuclear reactors in Brazil

Energy Technology Data Exchange (ETDEWEB)

Mata, Jonatas F.C. da; Vasconcelos, Vanderley de; Mesquita, Amir Z., E-mail: jonatasfmata@yahoo.com.br, E-mail: vasconv@cdtn.br, E-mail: amir@cdtn.br [Centro de Desenvolvimento da Tecnologia Nuclear (CDTN/CNEN-MG), Belo Horizonte, MG (Brazil)

2015-07-01

The nuclear accident at Fukushima Daiichi, occurred in Japan in 2011, brought reflections, worldwide, on the management of nuclear and environmental licensing processes of existing nuclear reactors. One of the key lessons learned in this matter, is that the studies of Probabilistic Safety Assessment and Severe Accidents are becoming essential, even in the early stage of a nuclear development project. In Brazil, Brazilian Nuclear Energy Commission, CNEN, conducts the nuclear licensing. The organism responsible for the environmental licensing is Brazilian Institute of Environment and Renewable Natural Resources, IBAMA. In the scope of the licensing processes of these two institutions, the safety analysis is essentially deterministic, complemented by probabilistic studies. The Probabilistic Safety Assessment (PSA) is the study performed to evaluate the behavior of the nuclear reactor in a sequence of events that may lead to the melting of its core. It includes both probability and consequence estimation of these events, which are called Severe Accidents, allowing to obtain the risk assessment of the plant. Thus, the possible shortcomings in the design of systems are identified, providing basis for safety assessment and improving safety. During the environmental licensing, a Quantitative Risk Analysis (QRA), including probabilistic evaluations, is required in order to support the development of the Risk Analysis Study, the Risk Management Program and the Emergency Plan. This article aims to provide an overview of probabilistic risk assessment methodologies and their applications in nuclear and environmental licensing processes of nuclear reactors in Brazil. (author)

Improvements of reforming performance of a nuclear heated steam reforming process

International Nuclear Information System (INIS)

Hada, Kazuhiko

1996-10-01

Performance of an energy production process by utilizing high temperature nuclear process heat was not competitive to that by utilizing non-nuclear process heat, especially fossil-fired process heat due to its less favorable chemical reaction conditions. Less favorable conditions are because a temperature of the nuclear generated heat is around 950degC and the heat transferring fluid is the helium gas pressurized at around 4 MPa. Improvements of reforming performance of nuclear heated steam reforming process were proposed in the present report. The steam reforming process, one of hydrogen production processes, has the possibility to be industrialized as a nuclear heated process as early as expected, and technical solutions to resolve issues for coupling an HTGR with the steam reforming system are applicable to other nuclear-heated hydrogen production systems. The improvements are as follows: As for the steam reformer, (1) increase in heat input to process gas by applying a bayonet type of reformer tubes and so on, (2) increase in reforming temperature by enhancing heat transfer rate by the use of combined promoters of orifice baffles, cylindrical thermal radiation pipes and other proposal, and (3) increase in conversion rate of methane to hydrogen by optimizing chemical compositions of feed process gas. Regarding system arrangement, a steam generator and superheater are set in the helium loop as downstream coolers of the steam reformer, so as to effectively utilize the residual nuclear heat for generating feed steam. The improvements are estimated to achieve the hydrogen production rate of approximately 3800 STP-m 3 /h for the heat source of 10 MW and therefore will provide the potential competitiveness to a fossil-fired steam reforming process. Those improvements also provide the compactness of reformer tubes, giving the applicability of seamless tubes. (J.P.N.)

Improvement of Haramay Fiber by Pre-treatment of Retting Process withPhosphoric Acid

International Nuclear Information System (INIS)

Kuntari-Sasas; Neni-Rustini Eriawati

2000-01-01

Haramay as bast fiber contains of cellulose fiber as the main part, mixedwith hemi cellulose, pectin, and lignin as binding material for cellulosefiber to keep it together in the bundle form. For textile material, this bastfiber has to be freed from its binding material, called as retting process,before subjecting to scouring, dyeing and finishing process in textileindustry. In the retting process the dissolve of binding material can be doneeither by using enzyme in bio technology or extraction with strong alkalinecondition in common technology. Using sodium hydroxide for dissolving thebinding material can be carried out easily with good dissolving ability, butcan render the strength retention of the cellulose fiber. Pre-treatment ofthe bast fiber with phosphoric acid (H 3 PO 4 ), is expected to hydrolyze someof the binding materials that can not be dissolved in alkaline condition,including natural pigment that colored the fiber with creamy white. In thisstudy, the pre-treatment process before retting with phosphoric acid wascarried out in various condition, such as concentration of phosphoric acid (5ml/l- 25 ml/l), time and temperature of pre-treatment (1-3 hours at 50 o C or12-24 hours at room temperature), followed by neutralization in dilutealkaline. The retting process was carried out by means of scouring in variousconcentration of sodium hydroxide (NaOH 38 o Be, 10 ml/l-30 m/l), and then wascontinued with bleaching process in hydrogen peroxide solution. Aftercarrying out those experiment, the bast fiber that called haramay wassubjected to testing for weight reduction, strength retention and degree ofwhiteness. From the testing results it is concluded that pre-treatment withphosphoric acid can increase the weight reduction, strength retention ortenacity and degree of whiteness of haramay fiber compared to the oneswithout pre-treatment with phosphoric acid. The best result was obtained bypre-treatment with 5 ml/l H 3 PO 4 at 50 o C for 2 hours, continued by

Triage of Women with Low-Grade Cervical Lesions - HPV mRNA Testing versus Repeat Cytology

Science.gov (United States)

Sørbye, Sveinung Wergeland; Arbyn, Marc; Fismen, Silje; Gutteberg, Tore Jarl; Mortensen, Elin Synnøve

2011-01-01

Background In Norway, women with low-grade squamous intraepithelial lesions (LSIL) are followed up after six months in order to decide whether they should undergo further follow-up or be referred back to the screening interval of three years. A high specificity and positive predictive value (PPV) of the triage test is important to avoid unnecessary diagnostic and therapeutic procedures. Materials and Methods At the University Hospital of North Norway, repeat cytology and the HPV mRNA test PreTect HPV-Proofer, detecting E6/E7 mRNA from HPV types 16, 18, 31, 33 and 45, are used in triage of women with ASC-US and LSIL. In this study, women with LSIL cytology in the period 2005–2008 were included (n = 522). Two triage methods were evaluated in two separate groups: repeat cytology only (n = 225) and HPV mRNA testing in addition to repeat cytology (n = 297). Histologically confirmed cervical intraepithelial neoplasia of grade 2 or worse (CIN2+) was used as the study endpoint. Results Of 522 women with LSIL, 207 had biopsies and 125 of them had CIN2+. The sensitivity and specificity of repeat cytology (ASC-US or worse) were 85.7% (95% confidence interval (CI): 72.1, 92.2) and 54.4 % (95% CI: 46.9, 61.9), respectively. The sensitivity and specificity of the HPV mRNA test were 94.2% (95% CI: 88.7, 99.7) and 86.0% (95% CI: 81.5, 90.5), respectively. The PPV of repeat cytology was 38.4% (95% CI: 29.9, 46.9) compared to 67.0% (95% CI: 57.7, 76.4) of the HPV mRNA test. Conclusion HPV mRNA testing was more sensitive and specific than repeat cytology in triage of women with LSIL cytology. In addition, the HPV mRNA test showed higher PPV. These data indicate that the HPV mRNA test is a better triage test for women with LSIL than repeat cytology. PMID:21918682

Compound and Geometry-Dependent Pre-Compound Models to Calculate the Nuclear Data for Fusion Reactors

International Nuclear Information System (INIS)

Jahn, Helmut

2005-01-01

Compound and geometry-dependent pre-compound nuclear reactions are very useful concepts of nuclear theory to calculate cross sections of neutrons of around 14 MeV and below scattered by nuclei of material of installations producing energy of nuclear fusion. If these concepts are used to discuss and improve the experimental data they have to be completed by DWBA-type contributions to the small-step region of the incident neutron which can account for the angular distribution of the scattered neutron because there is the difficulty to separate experimentally the incoming from the scattered beam. The angle integrated cross-section in this region can be shown to be accounted for the surface dependent components of Blanns geometry-dependent precompound mechanism of the statistical state density and level density contributions of the compound and precompound components beeing calculated according to the recent developments of Anzaldo using the analytic number theory. The experimental data have been taken from the results of Hermsdorf, Meister, Sassonov, Seeliger, Seidel, Shahin and of A.Takahashi

Permit processes for nuclear power. International lessons

International Nuclear Information System (INIS)

Gaahlin, Emil; Nilsson, Isabelle; Pettersson, Maria; Soederholm, Patrik

2010-01-01

The overall objective of this report is to analyze and compare the legal permitting and planning process for (first and foremost) new nuclear power stations in a number of selected countries. In this way the report provides relevant knowledge that could form the basis for discussing the efficiency of various national licensing processes (include the Swedish one). The study builds heavily on the analysis of legal documents and regulations, and addresses both the formal requirements for licensing and territorial planning procedures as well as the issues of public participation and access to justice in the respective countries. In addition to this legal approach, however, we also adopt an investor's perspective on the legislation, i.e., an analysis of the legal rules can influence investment decisions in practice. Furthermore, the study relies largely on a synthesis of previous studies as well as interviews with researchers, electricity companies and government officials in Sweden and abroad. The countries that are compared include Sweden, Finland, France, Canada, Switzerland, Great Britain, USA and South Korea. These include those that currently invest in new nuclear power as well as those who have recently reformed their plant permitting processes. The analysis highlights important differences among the various countries, including issues such as the political influence on the licensing process, the allocation of political power between the national and local levels, means of interacting with regular citizens, and the overall transparency and predictability of the legislation. Some selected practical experiences of the current legislation are also presented. The report first provides a short background to the role and the status of nuclear power in the global energy system, and we then present a rather comprehensive comparison of the permitting processes in the above countries. Each country section comprises a short background, a presentation of the existing

Conceptual modeling in systems biology fosters empirical findings: the mRNA lifecycle.

Directory of Open Access Journals (Sweden)

Dov Dori

Full Text Available One of the main obstacles to understanding complex biological systems is the extent and rapid evolution of information, way beyond the capacity individuals to manage and comprehend. Current modeling approaches and tools lack adequate capacity to model concurrently structure and behavior of biological systems. Here we propose Object-Process Methodology (OPM, a holistic conceptual modeling paradigm, as a means to model both diagrammatically and textually biological systems formally and intuitively at any desired number of levels of detail. OPM combines objects, e.g., proteins, and processes, e.g., transcription, in a way that is simple and easily comprehensible to researchers and scholars. As a case in point, we modeled the yeast mRNA lifecycle. The mRNA lifecycle involves mRNA synthesis in the nucleus, mRNA transport to the cytoplasm, and its subsequent translation and degradation therein. Recent studies have identified specific cytoplasmic foci, termed processing bodies that contain large complexes of mRNAs and decay factors. Our OPM model of this cellular subsystem, presented here, led to the discovery of a new constituent of these complexes, the translation termination factor eRF3. Association of eRF3 with processing bodies is observed after a long-term starvation period. We suggest that OPM can eventually serve as a comprehensive evolvable model of the entire living cell system. The model would serve as a research and communication platform, highlighting unknown and uncertain aspects that can be addressed empirically and updated consequently while maintaining consistency.

High temperature reactor and application to nuclear process heat

Energy Technology Data Exchange (ETDEWEB)

Schulten, R; Kugeler, K [Kernforschungsanlage Juelich G.m.b.H. (Germany, F.R.)

1976-01-01

The principle of high temperature nuclear process heat is explained and the main applications (hydrogasification of coal, nuclear chemical heat pipe, direct reduction of iron ore, coal gasification by steam and water splitting) are described in more detail. The motivation for the introduction of nuclear process heat to the market, questions of cost, of raw material resources and environmental aspects are the next point of discussion. The new technological questions of the nuclear reactor and the status of development are described, especially information about the fuel elements, the hot gas ducts, the contamination and some design considerations are added. Furthermore the status of development of helium heated steam reformers, the main results of the work until now and the further activities in this field are explained.

Nuclear heat source design for an advanced HTGR process heat plant

International Nuclear Information System (INIS)

McDonald, C.F.; O'Hanlon, T.W.

1983-01-01

A high-temperature gas-cooled reactor (HTGR) coupled with a chemical process facility could produce synthetic fuels (i.e., oil, gasoline, aviation fuel, methanol, hydrogen, etc.) in the long term using low-grade carbon sources (e.g., coal, oil shale, etc.). The ultimate high-temperature capability of an advanced HTGR variant is being studied for nuclear process heat. This paper discusses a process heat plant with a 2240-MW(t) nuclear heat source, a reactor outlet temperature of 950 0 C, and a direct reforming process. The nuclear heat source outputs principally hydrogen-rich synthesis gas that can be used as a feedstock for synthetic fuel production. This paper emphasizes the design of the nuclear heat source and discusses the major components and a deployment strategy to realize an advanced HTGR process heat plant concept

Dis3- and exosome subunit-responsive 3′ mRNA instability elements

International Nuclear Information System (INIS)

Kiss, Daniel L.; Hou, Dezhi; Gross, Robert H.; Andrulis, Erik D.

2012-01-01

Highlights: ► Successful use of a novel RNA-specific bioinformatic tool, RNA SCOPE. ► Identified novel 3′ UTR cis-acting element that destabilizes a reporter mRNA. ► Show exosome subunits are required for cis-acting element-mediated mRNA instability. ► Define precise sequence requirements of novel cis-acting element. ► Show that microarray-defined exosome subunit-regulated mRNAs have novel element. -- Abstract: Eukaryotic RNA turnover is regulated in part by the exosome, a nuclear and cytoplasmic complex of ribonucleases (RNases) and RNA-binding proteins. The major RNase of the complex is thought to be Dis3, a multi-functional 3′–5′ exoribonuclease and endoribonuclease. Although it is known that Dis3 and core exosome subunits are recruited to transcriptionally active genes and to messenger RNA (mRNA) substrates, this recruitment is thought to occur indirectly. We sought to discover cis-acting elements that recruit Dis3 or other exosome subunits. Using a bioinformatic tool called RNA SCOPE to screen the 3′ untranslated regions of up-regulated transcripts from our published Dis3 depletion-derived transcriptomic data set, we identified several motifs as candidate instability elements. Secondary screening using a luciferase reporter system revealed that one cassette—harboring four elements—destabilized the reporter transcript. RNAi-based depletion of Dis3, Rrp6, Rrp4, Rrp40, or Rrp46 diminished the efficacy of cassette-mediated destabilization. Truncation analysis of the cassette showed that two exosome subunit-sensitive elements (ESSEs) destabilized the reporter. Point-directed mutagenesis of ESSE abrogated the destabilization effect. An examination of the transcriptomic data from exosome subunit depletion-based microarrays revealed that mRNAs with ESSEs are found in every up-regulated mRNA data set but are underrepresented or missing from the down-regulated data sets. Taken together, our findings imply a potentially novel mechanism of mRNA

Contribution of the microprocessors in the study and development of a pre-processing unit involved in a nuclear physics experiment

International Nuclear Information System (INIS)

Pichot, G.

1980-01-01

The pre-processing unit has its place between the electronic output of the detector and the experiment control system, its role is 3-fold: a real-time role to provide adequate data to the control system allowing feedback, a basic role of selecting and reducing the volume of data and a role of managing the programs necessary to the first 2 roles. This work can be divided in 3 parts. First the analysis of the needs and limitations of the present system, secondly the meeting of the needs with on-the-shelf equipment, and thirdly validation and future improvements [fr

Poisson pre-processing of nonstationary photonic signals: Signals with equality between mean and variance.

Science.gov (United States)

Poplová, Michaela; Sovka, Pavel; Cifra, Michal

2017-01-01

Photonic signals are broadly exploited in communication and sensing and they typically exhibit Poisson-like statistics. In a common scenario where the intensity of the photonic signals is low and one needs to remove a nonstationary trend of the signals for any further analysis, one faces an obstacle: due to the dependence between the mean and variance typical for a Poisson-like process, information about the trend remains in the variance even after the trend has been subtracted, possibly yielding artifactual results in further analyses. Commonly available detrending or normalizing methods cannot cope with this issue. To alleviate this issue we developed a suitable pre-processing method for the signals that originate from a Poisson-like process. In this paper, a Poisson pre-processing method for nonstationary time series with Poisson distribution is developed and tested on computer-generated model data and experimental data of chemiluminescence from human neutrophils and mung seeds. The presented method transforms a nonstationary Poisson signal into a stationary signal with a Poisson distribution while preserving the type of photocount distribution and phase-space structure of the signal. The importance of the suggested pre-processing method is shown in Fano factor and Hurst exponent analysis of both computer-generated model signals and experimental photonic signals. It is demonstrated that our pre-processing method is superior to standard detrending-based methods whenever further signal analysis is sensitive to variance of the signal.

Synergistic energy conversion process using nuclear energy and fossil fuels

International Nuclear Information System (INIS)

Hori, Masao

2007-01-01

Because primary energies such as fossil fuels, nuclear energy and renewable energy are limited in quantity of supply, it is necessary to use available energies effectively for the increase of energy demand that is inevitable this century while keeping environment in good condition. For this purpose, an efficient synergistic energy conversion process using nuclear energy and fossil fuels together converted to energy carriers such are electricity, hydrogen, and synthetic fuels seems to be effective. Synergistic energy conversion processes containing nuclear energy were surveyed and effects of these processes on resource saving and the CO 2 emission reduction were discussed. (T.T.)

Risk assessment for nuclear processes at the Savannah River Site

International Nuclear Information System (INIS)

Durant, W.S.

1992-01-01

The Savannah River Site, one of the US Department of Energy's nuclear materials processing facilities, has for many years conducted risk-based safety analyses for the nuclear processes conducted at the facilities. This approach has allowed comparisons of risks to established criteria for acceptability. When the risk-based program was begun, it was evident that its success would depend upon having a compilation of data that was site specific. The decision was made to create a data bank of undesirable events that had occurred at the site's nuclear fuel reprocessing facilities. From this modest beginning, five data banks have been created for nuclear fuel reprocessing, waste management, nuclear fuel fabrication, tritium operations, and the Savannah River Technology Center. In addition to the primary purpose of providing a sound basis for risk-based safety analyses, these highly versatile data banks are routinely used for equipment breakdown histories, incident investigations, design studies, project justifications, reliability studies, process problem solving, training, and audits

The Ratios of Pre-emulsified Duck Skin for Optimized Processing of Restructured Ham.

Science.gov (United States)

Shim, Jae-Yun; Kim, Tae-Kyung; Kim, Young-Boong; Jeon, Ki-Hong; Ahn, Kwang-Il; Paik, Hyun-Dong; Choi, Yun-Sang

2018-02-01

The purpose of this study was to investigate the quality of duck ham formulated with duck skin through the pre-emulsification process. The experiments to investigate the quality characteristics of duck ham were carried out to measure proximate composition, cooking loss, emulsion stability, pH, color, texture profile analysis, apparent viscosity, and sensory characteristics. Duck ham was prepared with various ratios of duck skin in pre-emulsion as follows: Control (duct skin 30%), T1 (duck skin 20% + pre-emulsified duck skin 10%), T2 (duck skin 15% + pre-emulsified duck skin 15%), T3 (duck skin 10% + pre-emulsified duck skin 20%), and T4 (pre-emulsified duck skin 30%). As the ratio of duck skin to pre-emulsified skin changed, the quality of duck ham in terms of moisture content, fat content, cooking loss, emulsion stability, lightness, textural analysis, apparent viscosity, and overall acceptability changed. The moisture content of T2 was the highest ( p ham and 1:1 ratio of duck skin and pre-emulsified skin was the proper ratio to improve the quality characteristics of duck ham.

How Do Pre-Service Teachers' Reflective Processes Differ in Relation to Different Contexts?

Science.gov (United States)

Kaasila, Raimo; Lauriala, Anneli

2012-01-01

Reflective practice represents a central theme in teacher education. The focus of this study is to look at pre-service teachers' reflection processes and their breadth and depth in four different contexts. Our research data consist of 53 pre-service teachers' mathematics portfolios, from which three were selected for closer scrutiny. The chosen…

The Problem-Based Learning Process: Reflections of Pre-Service Elementary School Teachers

Science.gov (United States)

Baysal, Zeliha Nurdan

2017-01-01

This study aims to identify the benefits acquired by third-year pre-service elementary school teachers participating in a problem-based learning process in social studies education, the issues they encountered in that process and those they are likely to encounter, and their feelings about the process. Semi-structured interviews were used as one…

Processing of three-dimensional structures of Nuclear Medicine in PET modality; Processamento de estruturas tridimensionais de medicina nuclear na modalidade PET

Energy Technology Data Exchange (ETDEWEB)

Pacheco, Edward Florez; Furuie, Sergio Shiguemi, E-mail: edward.florez@usp.br [Universidade de Sao Paulo (EP/USP), SP (Brazil). Dept. de Engenharia de Telecomunicacoes e Controle. Lab. de Engenharia Biomedica

2013-03-15

The nuclear medicine, as a specialty to obtain medical images is very important, and it has became one of the main procedures utilized in health care centers to analyze the metabolic behavior of the patient. This project was based on medical images obtained by the PET modality (Positron Emission Tomography). Thus, we developed a framework for processing Nuclear Medicine three-dimensional images of the PET modality, which is composed of consecutive steps that start with the generation of standard images (gold standard) by using simulated images of the Left Ventricular Heart, such as phantoms obtained from the NCAT-4D software. Then, Poisson quantum noise was introduced into the whole volume to simulate the characteristic noises in PET images. Subsequently, the pre-processing step was executed by using specific 3D filters, such as the median filter, the weighted Gaussian filter, and the Anscombe/Wiener filter. Then the segmentation process, which is based on the fuzzy connectedness theory, was implemented. For that purpose four different 3D approaches were implemented: Generic, LIFO, kTetaFOEMS, and dynamic weight algorithm. Finally, an assessment procedure was used as a measurement tool to quantify three parameters (true positive, false positive and maximum distance) that determined the level of efficiency and precision of our process. It was found that the pair filter - segmenter formed by the Anscombe/Wiener filter together with the Fuzzy segmenter based on dynamic weights provided the best results, with VP and FP rates of 98.49 {+-}0.27% and 2.19 {+-}0.19%, respectively, for the simulation of the left ventricular volume. Along with the set of choices made during the processing structure, the project was finished with the analysis of a small number of volumes that belonged to a real PET test, thus the quantification of the volumes was obtained. (author)

Comparison of Various Nuclear Localization Signal-Fused Cas9 Proteins and Cas9 mRNA for Genome Editing in Zebrafish.

Science.gov (United States)

Hu, Peinan; Zhao, Xueying; Zhang, Qinghua; Li, Weiming; Zu, Yao

2018-03-02

The clustered regularly interspaced short palindromic repeats (CRISPR)/Cas9 system has been proven to be an efficient and precise genome editing technology in various organisms. However, the gene editing efficiencies of Cas9 proteins with a nuclear localization signal (NLS) fused to different termini and Cas9 mRNA have not been systematically compared. Here, we compared the ability of Cas9 proteins with NLS fused to the N-, C-, or both the N- and C-termini and N-NLS-Cas9-NLS-C mRNA to target two sites in the tyr gene and two sites in the gol gene related to pigmentation in zebrafish. Phenotypic analysis revealed that all types of Cas9 led to hypopigmentation in similar proportions of injected embryos. Genome analysis by T7 Endonuclease I (T7E1) assays demonstrated that all types of Cas9 similarly induced mutagenesis in four target sites. Sequencing results further confirmed that a high frequency of indels occurred in the target sites ( tyr1 > 66%, tyr2 > 73%, gol1 > 50%, and gol2 > 35%), as well as various types (more than six) of indel mutations observed in all four types of Cas9-injected embryos. Furthermore, all types of Cas9 showed efficient targeted mutagenesis on multiplex genome editing, resulting in multiple phenotypes simultaneously. Collectively, we conclude that various NLS-fused Cas9 proteins and Cas9 mRNAs have similar genome editing efficiencies on targeting single or multiple genes, suggesting that the efficiency of CRISPR/Cas9 genome editing is highly dependent on guide RNAs (gRNAs) and gene loci. These findings may help to simplify the selection of Cas9 for gene editing using the CRISPR/Cas9 system. Copyright © 2018 Hu et al.

A practicable signal processing algorithm for industrial nuclear instrument

International Nuclear Information System (INIS)

Tang Yaogeng; Gao Song; Yang Wujiao

2006-01-01

In order to reduce the statistical error and to improve dynamic performances of the industrial nuclear instrument, a practicable method of nuclear measurement signal processing is developed according to industrial nuclear measurement features. The algorithm designed is implemented with a single-chip microcomputer. The results of application in (radiation level gauge has proved the effectiveness of this method). (authors)

A single bout of whole-leg, peristaltic pulse external pneumatic compression upregulates PGC-1α mRNA and endothelial nitric oxide sythase protein in human skeletal muscle tissue.

Science.gov (United States)

Kephart, Wesley C; Mobley, C Brooks; Fox, Carlton D; Pascoe, David D; Sefton, JoEllen M; Wilson, Trent J; Goodlett, Michael D; Kavazis, Andreas N; Roberts, Michael D; Martin, Jeffrey S

2015-07-01

What is the central question of this study? Does 60 min of peristaltic pulse external pneumatic compression (EPC) alter gene and protein expression patterns related to metabolism, vascular biology, redox balance and inflammation in vastus lateralis biopsy samples? What is the main finding and its importance? A single bout of EPC transiently upregulates PGC-1α mRNA, while also upregulating endothelial nitric oxide synthase protein and nitric oxide metabolite concentrations in vastus lateralis biopsy samples. We investigated whether a single 60 min bout of whole-leg, lower pressure external pneumatic compression (EPC) altered select vascular, metabolic, antioxidant and inflammation-related mRNAs. Ten participants (eight male, two female; aged 22.0 ± 0.4 years) reported to the laboratory 4 h postprandial, and vastus lateralis muscle biopsies were obtained before (PRE) and 1 and 4 h after EPC treatment. Messenger RNA expression was analysed using real-time RT-PCR, and significant mRNA findings were investigated further by Western blot analysis of respective protein concentrations. Peroxisome proliferator-activated receptor γ coactivator-1α (PGC-1α) mRNA increased by 77% 1 h following EPC compared with PRE levels (P = 0.005), but no change in protein concentration 1 or 4 h post-EPC was observed. Increases in endothelial nitric oxide sythase (eNOS) mRNA (+44%) and superoxide dismutase 2 (SOD2) mRNA (+57%) 1 h post-EPC as well as an increase in interleukin-10 mRNA (+132%) 4 h post-EPC compared with PRE levels were observed, but only approached significance (P = 0.076, 0.077 and 0.074, respectively). Interestingly, eNOS protein (+40%, P = 0.025) and nitrate and nitrite (NOx) concentrations (+69%, P = 0.025) increased 1-4 h post-EPC. Moreover, SOD2 protein tended to increase from PRE to 4 h post-EPC (+43%, P = 0.074), although no changes in tissue 4-hydroxnonenal levels was observed. An acute bout of EPC transiently upregulates PGC-1α mRNA, while also upregulating e

U.S. Nuclear Regulatory Commission Process for Risk-Informing the Nuclear Waste Arena

International Nuclear Information System (INIS)

Leslie, B. W.

2003-01-01

The U.S. Nuclear Regulatory Commission (NRC) is increasing the use of risk insights and information in its regulation of nuclear materials and waste. The objective of this risk-informed regulatory effort is to improve the effectiveness and efficiency of the agency, while maintaining or increasing its focus on safety. The agency's Office of Nuclear Material Safety and Safeguards (NMSS) proposed a five-step process to carry out a framework for increasing the use of risk information and insights in its regulation of nuclear materials and waste. The office is carrying out the five-step process to risk-inform the nuclear materials and waste arenas. NMSS's actions included forming a Risk Task Group and the use of case studies to test and complete screening criteria for identifying candidate regulatory applications amenable for risk-informing. Other actions included involving stakeholders through enhanced public participation, developing safety goals for materials and waste regulatory applications, and establishing a risk training program for staff. Through the case studies, NRC staff found the draft screening criteria to be effective in deciding regulatory areas that may be amenable to an increased use of risk insights. NRC staff also found that risk information may have the potential to reduce regulatory burden and improve staff's efficiency in making decisions, while maintaining safety. Finally, staff found that it would be possible to develop safety goals for the nuclear materials and waste arenas

SmD1 Modulates the miRNA Pathway Independently of Its Pre-mRNA Splicing Function.

Directory of Open Access Journals (Sweden)

Xiao-Peng Xiong

2015-08-01

Full Text Available microRNAs (miRNAs are a class of endogenous regulatory RNAs that play a key role in myriad biological processes. Upon transcription, primary miRNA transcripts are sequentially processed by Drosha and Dicer ribonucleases into ~22-24 nt miRNAs. Subsequently, miRNAs are incorporated into the RNA-induced silencing complexes (RISCs that contain Argonaute (AGO family proteins and guide RISC to target RNAs via complementary base pairing, leading to post-transcriptional gene silencing by a combination of translation inhibition and mRNA destabilization. Select pre-mRNA splicing factors have been implicated in small RNA-mediated gene silencing pathways in fission yeast, worms, flies and mammals, but the underlying molecular mechanisms are not well understood. Here, we show that SmD1, a core component of the Drosophila small nuclear ribonucleoprotein particle (snRNP implicated in splicing, is required for miRNA biogenesis and function. SmD1 interacts with both the microprocessor component Pasha and pri-miRNAs, and is indispensable for optimal miRNA biogenesis. Depletion of SmD1 impairs the assembly and function of the miRISC without significantly affecting the expression of major canonical miRNA pathway components. Moreover, SmD1 physically and functionally associates with components of the miRISC, including AGO1 and GW182. Notably, miRNA defects resulting from SmD1 silencing can be uncoupled from defects in pre-mRNA splicing, and the miRNA and splicing machineries are physically and functionally distinct entities. Finally, photoactivatable-ribonucleoside-enhanced crosslinking and immunoprecipitation (PAR-CLIP analysis identifies numerous SmD1-binding events across the transcriptome and reveals direct SmD1-miRNA interactions. Our study suggests that SmD1 plays a direct role in miRNA-mediated gene silencing independently of its pre-mRNA splicing activity and indicates that the dual roles of splicing factors in post-transcriptional gene regulation may be

Fragmentation processes in nuclear reactions

International Nuclear Information System (INIS)

Legrain, R.

1984-08-01

Projectile and nuclear fragmentation are defined and processes referred to are recalled. The two different aspects of fragmentation are considered but the emphasis is also put on heavy ion induced reactions. The preliminary results of an experiment performed at GANIL to study peripheral heavy ions induced reactions at intermediate energy are presented. The results of this experiment will illustrate the characteristics of projectile fragmentation and this will also give the opportunity to study projectile fragmentation in the transition region. Then nuclear fragmentation is considered which is associated with more central collisions in the case of heavy ion induced reactions. This aspect of fragmentation is also ilustrated with two heavy ion experiments in which fragments emitted at large angle have been observed

Processing used nuclear fuel with nanoscale control of uranium and ultrafiltration

Energy Technology Data Exchange (ETDEWEB)

Wylie, Ernest M.; Peruski, Kathryn M.; Prizio, Sarah E. [Department of Civil and Environmental Engineering and Earth Sciences, University of Notre Dame, Notre Dame, IN 46556 (United States); Bridges, Andrea N.A.; Rudisill, Tracy S.; Hobbs, David T. [Savannah River National Laboratory, Aiken, SC 29808 (United States); Phillip, William A. [Department of Chemical and Biomolecular Engineering, University of Notre Dame, Notre Dame, IN 46556 (United States); Burns, Peter C., E-mail: pburns@nd.edu [Department of Civil and Environmental Engineering and Earth Sciences, University of Notre Dame, Notre Dame, IN 46556 (United States); Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN 46556 (United States)

2016-05-15

Current separation and purification technologies utilized in the nuclear fuel cycle rely primarily on liquid–liquid extraction and ion-exchange processes. Here, we report a laboratory-scale aqueous process that demonstrates nanoscale control for the recovery of uranium from simulated used nuclear fuel (SIMFUEL). The selective, hydrogen peroxide induced oxidative dissolution of SIMFUEL material results in the rapid assembly of persistent uranyl peroxide nanocluster species that can be separated and recovered at moderate to high yield from other process-soluble constituents using sequestration-assisted ultrafiltration. Implementation of size-selective physical processes like filtration could results in an overall simplification of nuclear fuel cycle technology, improving the environmental consequences of nuclear energy and reducing costs of processing. - Highlights: • Nanoscale control in irradiated fuel reprocessing. • Ultrafiltration to recover uranyl cage clusters. • Alternative to solvent extraction for uranium purification.

Pre-processing data using wavelet transform and PCA based on ...

Indian Academy of Sciences (India)

Abazar Solgi

2017-07-14

Jul 14, 2017 ... Pre-processing data using wavelet transform and PCA based on support vector regression and gene expression programming for river flow simulation. Abazar Solgi1,*, Amir Pourhaghi1, Ramin Bahmani2 and Heidar Zarei3. 1. Department of Water Resources Engineering, Shahid Chamran University of ...

2'-O-methylation in mRNA disrupts tRNA decoding during translation elongation.

Science.gov (United States)

Choi, Junhong; Indrisiunaite, Gabriele; DeMirci, Hasan; Ieong, Ka-Weng; Wang, Jinfan; Petrov, Alexey; Prabhakar, Arjun; Rechavi, Gideon; Dominissini, Dan; He, Chuan; Ehrenberg, Måns; Puglisi, Joseph D

2018-03-01

Chemical modifications of mRNA may regulate many aspects of mRNA processing and protein synthesis. Recently, 2'-O-methylation of nucleotides was identified as a frequent modification in translated regions of human mRNA, showing enrichment in codons for certain amino acids. Here, using single-molecule, bulk kinetics and structural methods, we show that 2'-O-methylation within coding regions of mRNA disrupts key steps in codon reading during cognate tRNA selection. Our results suggest that 2'-O-methylation sterically perturbs interactions of ribosomal-monitoring bases (G530, A1492 and A1493) with cognate codon-anticodon helices, thereby inhibiting downstream GTP hydrolysis by elongation factor Tu (EF-Tu) and A-site tRNA accommodation, leading to excessive rejection of cognate aminoacylated tRNAs in initial selection and proofreading. Our current and prior findings highlight how chemical modifications of mRNA tune the dynamics of protein synthesis at different steps of translation elongation.

Applying the breaks on gene expression - mRNA deadenylation by Pop2p

DEFF Research Database (Denmark)

Andersen, Kasper Røjkjær; Jonstrup, Anette Thyssen; Van, Lan Bich

When driving a car, control of the brakes is just as important as control of the accelerator pedal. Likewise, in gene expression, regulation of mRNA degradation is as important as regulation of its synthesis (Mühlemann, 2005). The rate-determining step of mRNA decay in eukaryotes seems to be the ......When driving a car, control of the brakes is just as important as control of the accelerator pedal. Likewise, in gene expression, regulation of mRNA degradation is as important as regulation of its synthesis (Mühlemann, 2005). The rate-determining step of mRNA decay in eukaryotes seems...... to be the shortening of the poly(A) tail (deadenylation), as this step is slower than the subsequent decapping and degradation of the mRNA body. The Mega-Dalton Ccr4-Not complex contains two exonucleases, Ccr4p and Pop2p, responsible for this process. It is not known at present why two conserved nucleases are needed...

Altered brain mechanisms of emotion processing in pre-manifest Huntington's disease.

Science.gov (United States)

Novak, Marianne J U; Warren, Jason D; Henley, Susie M D; Draganski, Bogdan; Frackowiak, Richard S; Tabrizi, Sarah J

2012-04-01

Huntington's disease is an inherited neurodegenerative disease that causes motor, cognitive and psychiatric impairment, including an early decline in ability to recognize emotional states in others. The pathophysiology underlying the earliest manifestations of the disease is not fully understood; the objective of our study was to clarify this. We used functional magnetic resonance imaging to investigate changes in brain mechanisms of emotion recognition in pre-manifest carriers of the abnormal Huntington's disease gene (subjects with pre-manifest Huntington's disease): 16 subjects with pre-manifest Huntington's disease and 14 control subjects underwent 1.5 tesla magnetic resonance scanning while viewing pictures of facial expressions from the Ekman and Friesen series. Disgust, anger and happiness were chosen as emotions of interest. Disgust is the emotion in which recognition deficits have most commonly been detected in Huntington's disease; anger is the emotion in which impaired recognition was detected in the largest behavioural study of emotion recognition in pre-manifest Huntington's disease to date; and happiness is a positive emotion to contrast with disgust and anger. Ekman facial expressions were also used to quantify emotion recognition accuracy outside the scanner and structural magnetic resonance imaging with voxel-based morphometry was used to assess the relationship between emotion recognition accuracy and regional grey matter volume. Emotion processing in pre-manifest Huntington's disease was associated with reduced neural activity for all three emotions in partially separable functional networks. Furthermore, the Huntington's disease-associated modulation of disgust and happiness processing was negatively correlated with genetic markers of pre-manifest disease progression in distributed, largely extrastriatal networks. The modulated disgust network included insulae, cingulate cortices, pre- and postcentral gyri, precunei, cunei, bilateral putamena

A nuclear inspector's perspective on decommissioning at UK nuclear sites

International Nuclear Information System (INIS)

Robinson, I.F.

1999-01-01

The legislative framework used to regulate decommissioning of nuclear facilities in the UK is described. Pre-licensing requirements are outlined and the operation of a nuclear site licence is described. Mention is made of safety assessment and the published principles which are NII's view of what constitutes good practice within the nuclear industry. HSE's approach to the regulation of nuclear decommissioning is described before discussing issues associated with optioneering, the timing of decommissioning, occupational doses and public doses. It is noted that the professional approach taken by the nuclear industry within the framework of the existing regulatory requirements has resulted in considerable reductions in occupational dose over the last few years. The de-licensing process is described in the context of terminating a licensee's period of responsibility for safety, and principles by which 'no danger' may be judged are described. Impending new legislation on environmental impact assessment in relation to decommissioning nuclear reactors is mentioned. It is concluded that a powerful and flexible method of regulatory control is in place with regard to nuclear decommissioning. (author)

Galvanic cell for processing of used nuclear fuel

Science.gov (United States)

Garcia-Diaz, Brenda L.; Martinez-Rodriguez, Michael J.; Gray, Joshua R.; Olson, Luke C.

2017-02-07

A galvanic cell and methods of using the galvanic cell is described for the recovery of uranium from used nuclear fuel according to an electrofluorination process. The galvanic cell requires no input energy and can utilize relatively benign gaseous fluorinating agents. Uranium can be recovered from used nuclear fuel in the form of gaseous uranium compound such as uranium hexafluoride, which can then be converted to metallic uranium or UO.sub.2 and processed according to known methodology to form a useful product, e.g., fuel pellets for use in a commercial energy production system.

Electrochemical fluorination for processing of used nuclear fuel

Science.gov (United States)

Garcia-Diaz, Brenda L.; Martinez-Rodriguez, Michael J.; Gray, Joshua R.; Olson, Luke C.

2016-07-05

A galvanic cell and methods of using the galvanic cell is described for the recovery of uranium from used nuclear fuel according to an electrofluorination process. The galvanic cell requires no input energy and can utilize relatively benign gaseous fluorinating agents. Uranium can be recovered from used nuclear fuel in the form of gaseous uranium compound such as uranium hexafluoride, which can then be converted to metallic uranium or UO.sub.2 and processed according to known methodology to form a useful product, e.g., fuel pellets for use in a commercial energy production system.

Aggregation process, application to nuclear multifragmentation

International Nuclear Information System (INIS)

Garcia, Jean-Baptiste

1995-01-01

It is depicted an aggregation model (applied to nuclear multifragmentation) which I have elaborated and validated. This model contains an aggregation procedure, allowing one to determine the aggregation state of a given system. It takes into account spatial and kinetic nucleonic information, as well as in-medium effects. It is made of several energetic linkage criterions, all based on a single quantity: the energy of a system computed in its center of mass frame. This procedure has been applied to nuclear physics, assuming nucleus as a mix of two Fermi gas, interacting via the Yukawa potential (plus Coulomb in between protons) and obeying to a classical exclusion principle. The general trends of the model match with those of nuclear physics. Moreover, two comparisons between the model and nuclear multifragmentation experiments (ALADIN, then FOPI) exhibit nice agreements. The FOPI one, shows that fragments are bound to be formed at the beginning of the expansion phase (Au + Au at 150 MeV/nuc, for central collisions). This work ends with a study of the main ingredients included in the model. It reveals that in-medium effects, exclusion principle as well as the shape of the potential have a non negligible influence on the studied nuclear aggregation process. (author) [fr

Automated system for processing nuclear emulsion data on nuclear-nuclear interactions for EMU-15 CERN experiment

International Nuclear Information System (INIS)

Aleksandrov, A.B.; Azarenkova, I.Yu.; Feinberg, E.L.; Goneharova, L.A.; Martynov, A.G.; Polukhina, N.G.; Starkov, N.I.

2004-01-01

The EMU-15 experiment has been performed at CERN by the LPI group with the aim of studying characteristics of high-density and high-temperature nuclear matter, in particular, for searching for manifestation of quark-gluon plasma. The main problem inherent in these investigations is a large amount of track measurements in nuclear emulsions. A very efficient Completely Automated Measuring Complex (Russian abbreviation sounds as P AVICOM ) for track-detector data processing in nuclear and high-energy particle physics is operating at the Lebedev Physical Institute. The PAVICOM provides essential improving the efficiency of experimental studies performed not only by the LPI group, but also by many Russian Institutes

Three essential management processes of nuclear power plant operators

International Nuclear Information System (INIS)

Qi Tunfeng

2010-01-01

The paper takes the operation and management of Qinshan NPP Phase II as an example, focusing on the implementation of the essential process from the following three aspects the NPP production organization, training, examination and authorization for safety-related personnel, and financing budge management. A better understanding and implementation of the essential process will enable nuclear power plants to effectively control the nuclear safety from the most fundamental managerial level. (author)

Implications of QCD for soft hadronic and nuclear processes

International Nuclear Information System (INIS)

Hwa, R.C.

1981-01-01

Physical implications of QCD for strong forces in soft processes are discussed. Topics include long-range force, Van der Waals force, nuclear force, hadron and quark structures. In the absence of a reliable calculational scheme, phenomenological models have been built that incorporate QCD ideas as far as possible. In the framework of those models calculations have been made that provide an understanding of the soft processes in terms of quarks and gluons. We review recent work on nuclear potential, form factors at low Q 2 , pion decay constant, inclusive distribution of low p/sub T/, and radiation length of fast quark in nuclear matter

Nuclear Material Processing at the Savannah River Site

International Nuclear Information System (INIS)

Severynse, T.F.

1998-07-01

Plutonium production for national defense began at Savannah River in the mid-1950s, following construction of production reactors and separations facilities. Following the successful completion of its production mission, the site's nuclear material processing facilities continue to operate to perform stabilization of excess materials and potentially support the disposition of these materials. A number of restoration and productivity improvement projects implemented in the 1980s, totaling nearly a billion dollars, have resulted in these facilities representing the most modern and only remaining operating large-scale processing facilities in the DOE Complex. Together with the Site's extensive nuclear infrastructure, and integrated waste management system, SRS is the only DOE site with the capability and mission of ongoing processing operations

Scientific data products and the data pre-processing subsystem of the Chang'e-3 mission

International Nuclear Information System (INIS)

Tan Xu; Liu Jian-Jun; Li Chun-Lai; Feng Jian-Qing; Ren Xin; Wang Fen-Fei; Yan Wei; Zuo Wei; Wang Xiao-Qian; Zhang Zhou-Bin

2014-01-01

The Chang'e-3 (CE-3) mission is China's first exploration mission on the surface of the Moon that uses a lander and a rover. Eight instruments that form the scientific payloads have the following objectives: (1) investigate the morphological features and geological structures at the landing site; (2) integrated in-situ analysis of minerals and chemical compositions; (3) integrated exploration of the structure of the lunar interior; (4) exploration of the lunar-terrestrial space environment, lunar surface environment and acquire Moon-based ultraviolet astronomical observations. The Ground Research and Application System (GRAS) is in charge of data acquisition and pre-processing, management of the payload in orbit, and managing the data products and their applications. The Data Pre-processing Subsystem (DPS) is a part of GRAS. The task of DPS is the pre-processing of raw data from the eight instruments that are part of CE-3, including channel processing, unpacking, package sorting, calibration and correction, identification of geographical location, calculation of probe azimuth angle, probe zenith angle, solar azimuth angle, and solar zenith angle and so on, and conducting quality checks. These processes produce Level 0, Level 1 and Level 2 data. The computing platform of this subsystem is comprised of a high-performance computing cluster, including a real-time subsystem used for processing Level 0 data and a post-time subsystem for generating Level 1 and Level 2 data. This paper describes the CE-3 data pre-processing method, the data pre-processing subsystem, data classification, data validity and data products that are used for scientific studies

Self-amplifying mRNA vaccines.

Science.gov (United States)

Brito, Luis A; Kommareddy, Sushma; Maione, Domenico; Uematsu, Yasushi; Giovani, Cinzia; Berlanda Scorza, Francesco; Otten, Gillis R; Yu, Dong; Mandl, Christian W; Mason, Peter W; Dormitzer, Philip R; Ulmer, Jeffrey B; Geall, Andrew J

2015-01-01

This chapter provides a brief introduction to nucleic acid-based vaccines and recent research in developing self-amplifying mRNA vaccines. These vaccines promise the flexibility of plasmid DNA vaccines with enhanced immunogenicity and safety. The key to realizing the full potential of these vaccines is efficient delivery of nucleic acid to the cytoplasm of a cell, where it can amplify and express the encoded antigenic protein. The hydrophilicity and strong net negative charge of RNA impedes cellular uptake. To overcome this limitation, electrostatic complexation with cationic lipids or polymers and physical delivery using electroporation or ballistic particles to improve cellular uptake has been evaluated. This chapter highlights the rapid progress made in using nonviral delivery systems for RNA-based vaccines. Initial preclinical testing of self-amplifying mRNA vaccines has shown nonviral delivery to be capable of producing potent and robust innate and adaptive immune responses in small animals and nonhuman primates. Historically, the prospect of developing mRNA vaccines was uncertain due to concerns of mRNA instability and the feasibility of large-scale manufacturing. Today, these issues are no longer perceived as barriers in the widespread implementation of the technology. Currently, nonamplifying mRNA vaccines are under investigation in human clinical trials and can be produced at a sufficient quantity and quality to meet regulatory requirements. If the encouraging preclinical data with self-amplifying mRNA vaccines are matched by equivalently positive immunogenicity, potency, and tolerability in human trials, this platform could establish nucleic acid vaccines as a versatile new tool for human immunization. Copyright © 2015 Elsevier Inc. All rights reserved.

Human papillomavirus mRNA and DNA testing in women with atypical squamous cells of undetermined significance

DEFF Research Database (Denmark)

Thomsen, Louise T; Dehlendorff, Christian; Junge, Jette

2016-01-01

In this prospective cohort study, we compared the performance of human papillomavirus (HPV) mRNA and DNA testing of women with atypical squamous cells of undetermined significance (ASC-US) during cervical cancer screening. Using a nationwide Danish pathology register, we identified women aged 30......-65 years with ASC-US during 2005-2011 who were tested for HPV16/18/31/33/45 mRNA using PreTect HPV-Proofer (n = 3,226) or for high-risk HPV (hrHPV) DNA using Hybrid Capture 2 (HC2) (n = 9,405) or Linear Array HPV-Genotyping test (LA) (n = 1,533). Women with ≥1 subsequent examination in the register (n = 13...... those testing HC2 negative (3.2% [95% CI: 2.2-4.2%] versus 0.5% [95% CI: 0.3-0.7%]). Patterns were similar after 18 months and 5 years'; follow-up; for CIN2+ and cancer as outcomes; across all age groups; and when comparing mRNA testing to hrHPV DNA testing using LA. In conclusion, the HPV16...

FRENDY: A new nuclear data processing system being developed at JAEA

Directory of Open Access Journals (Sweden)

Tada Kenichi

2017-01-01

Full Text Available JAEA has provided an evaluated nuclear data library JENDL and nuclear application codes such as MARBLE, SRAC, MVP and PHITS. These domestic codes have been widely used in many universities and industrial companies in Japan. However, we sometimes find problems in imported processing systems and need to revise them when the new JENDL is released. To overcome such problems and immediately process the nuclear data when it is released, JAEA started developing a new nuclear data processing system, FRENDY in 2013. This paper describes the outline of the development of FRENDY and both its capabilities and performances by the analyses of criticality experiments. The verification results indicate that FRENDY properly generates ACE files.

FRENDY: A new nuclear data processing system being developed at JAEA

Science.gov (United States)

Tada, Kenichi; Nagaya, Yasunobu; Kunieda, Satoshi; Suyama, Kenya; Fukahori, Tokio

2017-09-01

JAEA has provided an evaluated nuclear data library JENDL and nuclear application codes such as MARBLE, SRAC, MVP and PHITS. These domestic codes have been widely used in many universities and industrial companies in Japan. However, we sometimes find problems in imported processing systems and need to revise them when the new JENDL is released. To overcome such problems and immediately process the nuclear data when it is released, JAEA started developing a new nuclear data processing system, FRENDY in 2013. This paper describes the outline of the development of FRENDY and both its capabilities and performances by the analyses of criticality experiments. The verification results indicate that FRENDY properly generates ACE files.

Processing of LLRW arising from AECL nuclear research centres

International Nuclear Information System (INIS)

Buckley, L.P.; Le, V.T.; Beamer, N.V.; Brown, W.P.; Helbrecht, R.A.

1988-11-01

Operation of nuclear research reactors and laboratories results in the generation of a wide variety of solid and liquid radioactive wastes. This paper describes practical experience with processing of low-level radioactive wastes at two major nuclear research centres in Canada

Theoretical studies in nuclear reactions and nuclear structure

International Nuclear Information System (INIS)

Wallace, S.J.

1991-05-01

This report discusses topics in the following areas: Hadronic structure; hadrons in nuclei; hot hadronic matter; relativistic nuclear physics and NN interaction; leptonic emissions from high-Z heavy ion collisions; theoretical studies of heavy ion dynamics; nuclear pre-equilibrium reactions; classical chaotic dynamics and nuclear structure; and, theory of nuclear fission

IAEA Activities in Nuclear High Temperature Heat for Industrial Processes

International Nuclear Information System (INIS)

Reitsma, Frederik

2017-01-01

IAEA activities to support Member States: Information Exchange; Modelling and Simulations; Development of Methodologies; Safety; Technology Support; Education and Training; Knowledge Preservation. Assist MSs with national nuclear programmes; Support innovations in nuclear power deployment; Facilitate and assist international R&D collaborations. Interest in HTGR technology • The IAEA activities in the area of HTGR are guided by the recommendations of the TWG-GCRs – Currently 14 members: China, France, Germany, Indonesia, Japan, Korea (Rep. of), Netherlands, Russian Federation, South Africa, Switzerland, Turkey, Ukraine, United Kingdom, United States of America – 3 International Organizations: OECD/NEA, European Commission, Gen-IV Forum. – 2 new members in 2017: Poland and Singapore. Meetings • Meet every 24 months • Next meeting: 30 October – 1 November 2017 • Other Member states with some activities on HTGRs – Kazakhstan – history of close cooperation with Japan – Saudi Arabia – feasibility study for HTGRs to provide heat for the petro-chemical industry – Canada – three HTR designs under consideration in the nuclear regulator pre-licensing vendor design reviews

Pre-writing Techniques In The Writing Process For The L2 Classroom

OpenAIRE

Gülşah Geyimci

2014-01-01

This study investigated pre-writing techniques in the learning process to improve written communication skills of learners using qualitative research methods. This study was performed in a public school, Suphi Öner Primary School in Turkey, in Mersin. Students were seventh grade class that their level was pre-intermediate. This class was made up of twenty students. It took three weeks, the students' samples, drawings and blogs were documented by the students. In order to examine the results, ...

A study on the advanced methods for on-line signal processing by using artificial intelligence in nuclear power plants

International Nuclear Information System (INIS)

Kim, Wan Joo

1993-02-01

In order to assist the operators at the transient states of a nuclear power plant, the automation of signal processing is needed. This study has the objective to process the signals from a nuclear power plant for the purpose of advising the operator. To meet this objective, in this study, two kinds of on-line signal processing system based on AI techniques are developed for the nuclear power plant application with on-line signals. First, an artificial neural network for signal prediction is developed for the adequate countermoves at transient states. The steam generator water level is adopted as the example and the outputs of a simulation program for the dynamics of steam generator combined with noises are used as the training patterns. For the training of the artificial neural network, the modified backpropagation algorithm is proposed for escaping quickly from local minima. The modified algorithm is different from the ordinary backpropagation algorithm in the aspect that the training rate coefficient is repeatedly adjusted randomly and taken when the training is improved. This trial has an effect to search for an adequate magnitude of a training rate coefficient. The comparison result shows that the modified algorithm enables the neural network to be trained more quickly. The simulation result shows that the outputs of the artificial neural network are not sensitive to noises. Using the artificial neural networks proposed in this thesis, the operators can predict the next status of a plant and can take actions to maintain the stability of plant. Second, the multi sensor integration system has been developed for the identification of transient states. The developed system is divided into two parts; pre-processors and a fusion part. An artificial neural network is adopted in the fusion part to include the knowledge about the identification and to make a decision of the transient state. The developed pre-processors play a role of classifying the trend types of

Discrete pre-processing step effects in registration-based pipelines, a preliminary volumetric study on T1-weighted images.

Science.gov (United States)

Muncy, Nathan M; Hedges-Muncy, Ariana M; Kirwan, C Brock

2017-01-01

Pre-processing MRI scans prior to performing volumetric analyses is common practice in MRI studies. As pre-processing steps adjust the voxel intensities, the space in which the scan exists, and the amount of data in the scan, it is possible that the steps have an effect on the volumetric output. To date, studies have compared between and not within pipelines, and so the impact of each step is unknown. This study aims to quantify the effects of pre-processing steps on volumetric measures in T1-weighted scans within a single pipeline. It was our hypothesis that pre-processing steps would significantly impact ROI volume estimations. One hundred fifteen participants from the OASIS dataset were used, where each participant contributed three scans. All scans were then pre-processed using a step-wise pipeline. Bilateral hippocampus, putamen, and middle temporal gyrus volume estimations were assessed following each successive step, and all data were processed by the same pipeline 5 times. Repeated-measures analyses tested for a main effects of pipeline step, scan-rescan (for MRI scanner consistency) and repeated pipeline runs (for algorithmic consistency). A main effect of pipeline step was detected, and interestingly an interaction between pipeline step and ROI exists. No effect for either scan-rescan or repeated pipeline run was detected. We then supply a correction for noise in the data resulting from pre-processing.

An evaluation of UO2-CNT composites made by SPS as an accident tolerant nuclear fuel pellet and the feasibility of SPS as an economical fabrication process for the nuclear fuel cycle

Science.gov (United States)

Cartas, Andrew R.

The innovative and advanced purpose of this study is to understand and establish proper sintering procedures for Spark Plasma Sintering process in order to fabricate high density, high thermal conductivity UO2 -CNT pellets. Mixing quality and chemical reactions have been investigated by field emission scanning electron microscopy (FESEM), wavelength dispersive spectroscopy (WDS), and X-ray diffraction (XRD). The effect of various types of CNTs on the mixing and sintering quality of UO2-CNT pellets with SPS processing have been examined. The Archimedes Immersion Method, laser flash method, and FE-SEM will be used to investigate the density, thermal conductivity, grain size, pinning effects, and CNT dispersion of fabricated UO2-CNT pellets. Pre-fabricated CNT's were added to UO 2 powder and dispersed via sonication and/or ball milling and then made into composite nuclear pellets. An investigation of the economic impact of SPS on the nuclear fuel cycle for producing pure and composite UO2 fuels was conducted.

MRN1 implicates chromatin remodeling complexes and architectural factors in mRNA maturation

DEFF Research Database (Denmark)

Düring, Louis; Thorsen, Michael; Petersen, Darima

2012-01-01

A functional relationship between chromatin structure and mRNA processing events has been suggested, however, so far only a few involved factors have been characterized. Here we show that rsc nhp6¿¿ mutants, deficient for the function of the chromatin remodeling factor RSC and the chromatin....... Genetic interactions are observed between 2 µm-MRN1 and the splicing deficient mutants snt309¿, prp3, prp4, and prp22, and additional genetic analyses link MRN1, SNT309, NHP6A/B, SWI/SNF, and RSC supporting the notion of a role of chromatin structure in mRNA processing....

Remote operated systems for the management of nuclear processes

International Nuclear Information System (INIS)

Popa, I.

1997-01-01

The paper shortly presents the remote techniques and systems used regularly for the management of nuclear processes according to the variability and complexity of human operations and to the degree of automation. The paper contains a synthesis of the evolution of remote operating systems and advances the model of an adaptive and self-adaptive expert-robot equipment which is a very complex equipment used for integrated management of nuclear processes. Due to the complexity and variability of the technological operations and environment conditions, none of the techniques and systems presented in the paper do satisfy completely the management of the nuclear technologies as a whole. They must be utilized selectively according to the nature of the actual characteristics of the nuclear process. The expert and expert-robot systems offer a series of advantages among which one can mention: the continuity of the high quality expert's reports, easy extension, the explanation of the decision in detail, the elimination of the routine, the diagnosis of some equipment and process state, forecast of the future behaviour of equipment, processes, market, environment, etc., the multiplying of sources of information, pertinent comparison, the increasing of the performance of the user in general. The expert and expert-robot systems maintain some important drawbacks as: the possibility of taking wrong decision, the difficulty of using information from other expert systems similar to this one at present and not in the least, the high prices. (author)

Once-through hybrid sulfur process for nuclear hydrogen production

International Nuclear Information System (INIS)

Jeong, Y. H.

2008-01-01

Increasing concern about the global climate change spurs the development of low- or zero-carbon energy system. Nuclear hydrogen production by water electrolysis would be the one of the short-term solutions, but low efficiency and high production cost (high energy consumption) is the technical hurdle to be removed. In this paper the once-through sulfur process composed of the desulfurization and the water electrolysis systems is proposed. Electrode potential for the conventional water electrolysis (∼2.0 V) can be reduced significantly by the anode depolarization using sulfur dioxide: down to 0.6 V depending on the current density This depolarized electrolysis is the electrolysis step of the hybrid sulfur process originally proposed by the Westinghouse. However; recycling of sulfur dioxide requires a high temperature heat source and thus put another technical hurdle on the way to nuclear hydrogen production: the development of high temperature nuclear reactors and corresponding sulfuric acid decomposition system. By the once-through use of sulfur dioxide rather than the closed recycle, the hurdle can be removed. For the sulfur feed, the desulfurization system is integrated into the water electrolysis system. Fossil fuels include a few percent of sulfur by weight. During the refinement or energy conversion, most of the sulfur should be separated The separated sulfur can be fed to the water electrolysis system and the final product would be hydrogen and sulfuric acid, which is number one chemical in the world by volume. Lowered electrode potential and additional byproduct, the sulfuric acid, can provide economically affordable hydrogen. In this study, the once-through hybrid sulfur process for hydrogen production was proposed and the process was optimized considering energy consumption in electrolysis and sulfuric acid concentration. Economic feasibility of the proposed process was also discussed. Based on currently available experimental data for the electrode

Iron Phosphate Glasses: An Alternative for Vitrifying Certain Nuclear Wastes

Energy Technology Data Exchange (ETDEWEB)

Delbert E. Day; Chandra S. Ray; Cheol-Woon Kim

2004-12-28

Vitrification of nuclear waste in a glass is currently the preferred process for waste disposal. DOE currently approves only borosilicate (BS) type glasses for such purposes. However, many nuclear wastes, presently awaiting disposal, have complex and diverse chemical compositions, and often contain components that are poorly soluble or chemically incompatible in BS glasses. Such problematic wastes can be pre-processed and/or diluted to compensate for their incompatibility with a BS glass matrix, but both of these solutions increases the wasteform volume and the overall cost for vitrification. Direct vitrification using alternative glasses that utilize the major components already present in the waste is preferable, since it avoids pre-treating or diluting the waste, and, thus, minimizes the wasteform volume and overall cost.

Iron Phosphate Glasses: An Alternative for Vitrifying Certain Nuclear Wastes

International Nuclear Information System (INIS)

Day, Delbert E.; Ray, Chandra S.; Cheol-Woon Kim

2004-01-01

Vitrification of nuclear waste in a glass is currently the preferred process for waste disposal. DOE currently approves only borosilicate (BS) type glasses for such purposes. However, many nuclear wastes, presently awaiting disposal, have complex and diverse chemical compositions, and often contain components that are poorly soluble or chemically incompatible in BS glasses. Such problematic wastes can be pre-processed and/or diluted to compensate for their incompatibility with a BS glass matrix, but both of these solutions increases the wasteform volume and the overall cost for vitrification. Direct vitrification using alternative glasses that utilize the major components already present in the waste is preferable, since it avoids pre-treating or diluting the waste, and, thus, minimizes the wasteform volume and overall cost

High temperature heat exchange: nuclear process heat applications

International Nuclear Information System (INIS)

Vrable, D.L.

1980-09-01

The unique element of the HTGR system is the high-temperature operation and the need for heat exchanger equipment to transfer nuclear heat from the reactor to the process application. This paper discusses the potential applications of the HTGR in both synthetic fuel production and nuclear steel making and presents the design considerations for the high-temperature heat exchanger equipment

Software for the nuclear reactor dynamics study using time series processing

International Nuclear Information System (INIS)

Valero, Esbel T.; Montesino, Maria E.

1997-01-01

The parametric monitoring in Nuclear Power Plant (NPP) permits the operational surveillance of nuclear reactor. The methods employed in order to process this information such as FFT, autoregressive models and other, have some limitations when those regimens in which appear strongly non-linear behaviors are analyzed. In last years the chaos theory has offered new ways in order to explain complex dynamic behaviors. This paper describes a software (ECASET) that allow, by time series processing from NPP's acquisition system, to characterize the nuclear reactor dynamic as a complex dynamical system. Here we show using ECASET's results the possibility of classifying the different regimens appearing in nuclear reactors. The results of several temporal series processing from real systems are introduced. This type of analysis complements the results obtained with traditional methods and can constitute a new tool for monitoring nuclear reactors. (author). 13 refs., 3 figs

The bio-complex "reaction pattern in vertebrate cells" reduces cytokine-induced cellular adhesion molecule mRNA expression in human endothelial cells by attenuation of NF-kappaB translocation.

Science.gov (United States)

Rönnau, Cindy; Liebermann, Herbert E H; Helbig, Franz; Staudt, Alexander; Felix, Stephan B; Ewert, Ralf; Landsberger, Martin

2009-02-28

The bio-complex "reaction pattern in vertebrate cells" (RiV) is mainly represented by characteristic exosome-like particles--probably as reaction products of cells to specific stress. The transcription factor NF-kappaB plays a central role in inflammation. We tested the hypothesis that RiV particle preparations (RiV-PP) reduce cellular adhesion molecule (CAM) expression (ICAM-1, VCAM-1, E-selectin) by the attenuation of NF-kappaB translocation in human umbilical vein endothelial cells (HUVEC). After 4 hours, pre-incubation of HUVEC with RiV-PP before stimulation with TNF-alpha significantly reduced ICAM-1 (65.5+/-10.3%) and VCAM-1 (71.1+/-12.3%) mRNA expression compared to TNF-alpha-treated cells (100%, n=7). ICAM-1 surface expression was significantly albeit marginally reduced in RiV/TNF-alpha- treated cells (92.0+/-5.6%, n=4). No significant effect was observed on VCAM-1 surface expression. In RiV/TNF-alpha-treated cells (n=4), NF-kappaB subunits p50 (85.7+/-4.1%) and p65 (85.0+/-1.8%) nuclear translocation was significantly reduced. RiV-PP may exert an anti-inflammatory effect in HUVEC by reducing CAM mRNA expression via attenuation of p50 and p65 translocation.

Learning processes of students in competence based pre-vocational secondary education

NARCIS (Netherlands)

Koopman, M.; Teune, P.J.; Beijaard, D.; Brok, den P.J.

2009-01-01

The purpose of this study was to validate a causal and hierarchical model to elaborate on the relation between goal orientations, information processing strategies and development of conceptual knowledge of pre-vocational secondary education-students. This model can be used to describe students'

Learning processes of students in competence-based pre-vocational secondary education

NARCIS (Netherlands)

prof dr Douwe Beijaard; Dr. M. Koopman; P. den Brok; Dr P.J. Teune

2008-01-01

The purpose of this study was to validate a causal and hierarchical model that describes the relations between goal orientations, information processing strategies and development of conceptual knowledge of pre-vocational secondary education-students (n=719; 14 schools). Preferences of students for

Decommissioning Licensing Process of Nuclear Installations in Spain

International Nuclear Information System (INIS)

Correa Sainz, Cristina

2016-01-01

The Enresa experience related to the decommissioning of nuclear facilities includes the decommissioning of the Vandellos I and Jose Cabrera NPPs. The Vandellos I gas-graphite reactor was decommissioned in about five years (from 1998 to 2003) to what is known as level 2. In February 2010, the decommissioning of Jose Cabrera power plant has been initiated and it is scheduled to be finished by 2018. The decommissioning of a nuclear power plant is a complex administrative process, the procedure for changing from operation to decommissioning is established in the Spanish law. This paper summarizes the legal framework defining the strategies, the main activities and the basic roles of the various agents involved in the decommissioning of nuclear facilities in Spain. It also describes briefly the Licensing documents required to obtain the decommissioning authorization and the Enresa point of view, as licensee, on the licensing decommissioning process. (author)

Study on process of laser cladded nuclear valve parts

International Nuclear Information System (INIS)

Zhang Chunliang

2000-01-01

The microstructure and performances of the Co-base alloy coatings that are formed by laser cladding, plasma spurt welding and arc surfacing on the nuclear valve-sealing surface have been studied and compared. The combination costs of laser cladding, plasma spurt welding and arc, surfacing have been analyzed and compared. The results showed that the laser cladding processing has the advantages of high efficiency, low energy cost, a little machining allowance, high rate of finished products and low combination cost, compared with plasma spurt welding processing and arc surfacing processing. The laser cladding technology can improve the qualities of nuclear valve parts and increase their service life. Therefore, the laser cladding processing is a new technology with developing potential

Delayed hydride cracking: alternative pre-cracking method

International Nuclear Information System (INIS)

Mieza, Juan I.; Ponzoni, Lucio M.E.; Vigna, Gustavo L.; Domizzi, Gladys

2009-01-01

The internal components of nuclear reactors built-in Zr alloys are prone to a failure mechanism known as Delayed Hydride Cracking (DHC). This situation has triggered numerous scientific studies in order to measure the crack propagation velocity and the threshold stress intensity factor associated to DHC. Tests are carried out on fatigued pre-crack samples to ensure similar test conditions and comparable results. Due to difficulties in implementing the fatigue pre-crack method it would be desirable to replace it with a pre-crack produced by the same process of DHC, for which is necessary to demonstrate equivalence of this two methods. In this work tests on samples extracted from two Zr-2.5 Nb tubes were conducted. Some of the samples were heat treated to obtain a range in their metallurgical properties as well as different DHC velocities. A comparison between velocities measured in test samples pre-cracked by fatigue and RDIH is done, demonstrating that the pre-cracking method does not affect the measured velocity value. In addition, the incubation (t inc ), which is the time between the application of the load and the first signal of crack propagation, in samples pre-cracked by RDIH, was measured. It was found that these times are sufficiently short, even in the worst cases (lower speed) and similar to the ones of fatigued pre-cracked samples. (author)

Co-ordinate decrease in the expression of the mitochondrial genome and nuclear genes for mitochondrial proteins in the lactation-induced mitochondrial hypotrophy of rat brown fat.

Science.gov (United States)

Martin, I; Giralt, M; Viñas, O; Iglesias, R; Mampel, T; Villarroya, F

1995-01-01

The relative abundance of the mitochondrial-encoded mRNAs for cytochrome c oxidase subunit II and NADH dehydrogenase subunit I was lower in brown adipose tissue (BAT) from lactating rats than in virgin controls. This decrease was in parallel with a significant decrease in mitochondrial 16 S rRNA levels and in the relative content of mitochondrial DNA in the tissue. BAT from lactating rats showed lowered mRNA expression of the nuclear-encoded genes for the mitochondrial uncoupling protein, subunit IV of cytochrome c oxidase and the adenine nucleotide translocase isoforms ANT1 and ANT2, whereas mRNA levels for the ATP synthase beta-subunit were unchanged. However, the relative content of this last protein was lower in BAT mitochondria from lactating rats than in virgin controls. It is concluded that lactation-induced mitochondrial hypotrophy in BAT is associated with a co-ordinate decrease in the expression of the mitochondrial genome and nuclear genes for mitochondrial proteins. This decrease is caused by regulatory events acting at different levels, including pre- and post-transcriptional regulation. BAT appears to be a useful model with which to investigate the molecular mechanisms involved in the co-ordination of the expression of the mitochondrial and nuclear genomes during mitochondrial biogenesis. Images Figure 1 Figure 2 PMID:8948428

Pre-eruptive magmatic processes re-timed using a non-isothermal approach to magma chamber dynamics.

Science.gov (United States)

Petrone, Chiara Maria; Bugatti, Giuseppe; Braschi, Eleonora; Tommasini, Simone

2016-10-05

Constraining the timescales of pre-eruptive magmatic processes in active volcanic systems is paramount to understand magma chamber dynamics and the triggers for volcanic eruptions. Temporal information of magmatic processes is locked within the chemical zoning profiles of crystals but can be accessed by means of elemental diffusion chronometry. Mineral compositional zoning testifies to the occurrence of substantial temperature differences within magma chambers, which often bias the estimated timescales in the case of multi-stage zoned minerals. Here we propose a new Non-Isothermal Diffusion Incremental Step model to take into account the non-isothermal nature of pre-eruptive processes, deconstructing the main core-rim diffusion profiles of multi-zoned crystals into different isothermal steps. The Non-Isothermal Diffusion Incremental Step model represents a significant improvement in the reconstruction of crystal lifetime histories. Unravelling stepwise timescales at contrasting temperatures provides a novel approach to constraining pre-eruptive magmatic processes and greatly increases our understanding of magma chamber dynamics.

Sensitivity studies for the main r process: nuclear masses

Directory of Open Access Journals (Sweden)

A. Aprahamian

2014-02-01

Full Text Available The site of the rapid neutron capture process (r process is one of the open challenges in all of physics today. The r process is thought to be responsible for the creation of more than half of all elements beyond iron. The scientific challenges to understanding the origin of the heavy elements beyond iron lie in both the uncertainties associated with astrophysical conditions that are needed to allow an r process to occur and a vast lack of knowledge about the properties of nuclei far from stability. One way is to disentangle the nuclear and astrophysical components of the question. On the nuclear physics side, there is great global competition to access and measure the most exotic nuclei that existing facilities can reach, while simultaneously building new, more powerful accelerators to make even more exotic nuclei. On the astrophysics side, various astrophysical scenarios for the production of the heaviest elements have been proposed but open questions remain. This paper reports on a sensitivity study of the r process to determine the most crucial nuclear masses to measure using an r-process simulation code, several mass models (FRDM, Duflo-Zuker, and HFB-21, and three potential astrophysical scenarios.

Nucleolin and YB-1 are required for JNK-mediated interleukin-2 mRNA stabilization during T-cell activation

DEFF Research Database (Denmark)

Chen, C Y; Gherzi, R; Andersen, Jens S.

2000-01-01

Regulated mRNA turnover is a highly important process, but its mechanism is poorly understood. Using interleukin-2 (IL-2) mRNA as a model, we described a role for the JNK-signaling pathway in stabilization of IL-2 mRNA during T-cell activation, acting via a JNK response element (JRE) in the 5' un...

Resonance internal conversion as a way of accelerating nuclear processes

International Nuclear Information System (INIS)

Karpeshin, F.F.

2006-01-01

Theory of resonance conversion is presented. Being a natural extension of the traditional internal conversion into the subthreshold area, resonance conversion in a number of cases strongly affects the nuclear processes. Moreover, concentrating the transition strength on the narrow bands corresponding to the spectral atomic lines, it offers a unique tool capable of accelerating nuclear decay rates. Furthermore, along with the conventional nonradiative process of nuclear excitation through NEET and its reverse, TEEN, resonance conversion offers an appropriate mathematics for consideration of a number of cross-invariant processes involving both nuclei and electrons: excitation and deexcitation of the nuclei by hyperfine magnetic field, nuclear spin mixing, hyperfine interaction and magnetic anomalies in the atomic spectra, collisional nuclear excitation via ionization of the shells in the muon decay in the orbit, etc. The mechanisms of the optical pumping of the isomers are also considered, as well as triggering their energy in the resonance field of a laser. The effect is especially high in the hydrogen-like heavy ions due to practical absence of any damping of the resonance. The theory is also generalized to the case of the discrete Auger transitions [ru

Structural Pre-sizing of a Coaxial Double-tube Type Hot Gas Duct

Energy Technology Data Exchange (ETDEWEB)

Song, Kee Nam; Kim, Y-W [Korea Atomic Energy Research Institute, Daejeon (Korea, Republic of)

2008-10-15

The nuclear hydrogen system being researched at KAERI is planning to produce hydrogen in the order of 950 .deg. C by using nuclear energy and a thermo-chemical process, and helium gas is tentatively considered as the choice for the coolant. A hot gas duct (HGD) is a key component connecting the reactor pressure vessel and the intermediate heat exchanger (IHX) for the nuclear hydrogen system. The HGD is a unique component exclusively found in an HTR-module concept where a nuclear core and IHX are placed separately into two pressure vessels, which require a connecting duct between them. A coaxial double-tube type cross vessel is considered for the HGD structure of the nuclear hydrogen system because of its successive extensive experience. In this study, a structural pre-sizing for the primary HGD was carried out. These activities include a predecision on the geometric dimensions, a pre-evaluation on the strength, and a pre-selection on the material of the coaxial double-tube type cross vessel components. A predecision on the geometric dimensions was undertaken based on various engineering concepts, such as a constant flow velocity (CFV) model, a constant flow rate (CFR) model, a constant hydraulic head (CHH) model, and finally a heat balanced (HB) model. For the CFV model, CFR model, and CHH model, the HGD structure might be insensitive to a flow induced vibration (FIV) in the case where there are no pressure differences between the hot and cold helium regions. Also we compared the geometric dimensions from the various models.

Nuclear RNA sequencing of the mouse erythroid cell transcriptome.

Directory of Open Access Journals (Sweden)

Jennifer A Mitchell

Full Text Available In addition to protein coding genes a substantial proportion of mammalian genomes are transcribed. However, most transcriptome studies investigate steady-state mRNA levels, ignoring a considerable fraction of the transcribed genome. In addition, steady-state mRNA levels are influenced by both transcriptional and posttranscriptional mechanisms, and thus do not provide a clear picture of transcriptional output. Here, using deep sequencing of nuclear RNAs (nucRNA-Seq in parallel with chromatin immunoprecipitation sequencing (ChIP-Seq of active RNA polymerase II, we compared the nuclear transcriptome of mouse anemic spleen erythroid cells with polymerase occupancy on a genome-wide scale. We demonstrate that unspliced transcripts quantified by nucRNA-seq correlate with primary transcript frequencies measured by RNA FISH, but differ from steady-state mRNA levels measured by poly(A-enriched RNA-seq. Highly expressed protein coding genes showed good correlation between RNAPII occupancy and transcriptional output; however, genome-wide we observed a poor correlation between transcriptional output and RNAPII association. This poor correlation is due to intergenic regions associated with RNAPII which correspond with transcription factor bound regulatory regions and a group of stable, nuclear-retained long non-coding transcripts. In conclusion, sequencing the nuclear transcriptome provides an opportunity to investigate the transcriptional landscape in a given cell type through quantification of unspliced primary transcripts and the identification of nuclear-retained long non-coding RNAs.

Public hearing process for nuclear power plants. Seminar report

International Nuclear Information System (INIS)

1979-02-01

On June 26 and 27, 1978, the Nuclear Regulatory Commission conducted a seminar on the public hearing process for nuclear power plants. The seminar was intended to examine current practices regarding the conduct of public hearings and how these practices related to the statutory intent, to assess whether existing procedures are being followed, and to explore whether administrative or legal changes are warranted. The seminar format allowed exchanges of views among participants in the hearing process and was attended by members of the public, the General Accounting Office, Congressional staffs, NRC, and the nuclear industry. The report contains panel reports on scheduling of public hearings, procedures for Board notification, selection and training of panel members, hearing procedures, and Board functions

Gasification of coal using nuclear process heat. Chapter D

International Nuclear Information System (INIS)

Schilling, H.-D.; Bonn, B.; Krauss, U.

1979-01-01

In the light of the high price of coal and the enormous advances made recently in nuclear engineering, the possibility of using heat from high-temperature nuclear reactors for gasification processes was discussed as early as the 1960s. The advantages of this technology are summarized. A joint programme of development work is described, in which the Nuclear Research Centre at Juelich is aiming to develop a high-temperature reactor which will supply process heat at as high a temperature as possible, while other organizations are working on the hydrogasification of lignites and hard coals, and steam gasification. Experiments are at present being carried out on a semi-technical scale, and no operational data for large-scale plants are available as yet. (author)

The NJOY nuclear data processing system Version 91

International Nuclear Information System (INIS)

MacFarlane, R.E.; Muir, D.W.

1994-10-01

The NJOY nuclear data processing system is a comprehensive computer code package for producing pointwise and multigroup cross sections and related quantities from elevated nuclear data in the ENDF format, including the latest US library, ENDF/B-VI. The NJOY code can work with neutrons, photons, and charged particles, and it can produce libraries for a wide variety of particle transport and reactor analysis codes

The NJOY Nuclear Data Processing System, Version 2016

Energy Technology Data Exchange (ETDEWEB)

Macfarlane, Robert [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Muir, Douglas W. [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Boicourt, R. M. [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Kahler, III, Albert Comstock [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Conlin, Jeremy Lloyd [Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

2017-01-09

The NJOY Nuclear Data Processing System, version 2016, is a comprehensive computer code package for producing pointwise and multigroup cross sections and related quantities from evaluated nuclear data in the ENDF-4 through ENDF-6 legacy card-image formats. NJOY works with evaluated files for incident neutrons, photons, and charged particles, producing libraries for a wide variety of particle transport and reactor analysis codes.

Investigating Pre-service Mathematics Teachers’ Geometric Problem Solving Process in Dynamic Geometry Environment

Directory of Open Access Journals (Sweden)

Deniz Özen

2013-03-01

Full Text Available The aim of this study is to investigate pre-service elementary mathematics teachers’ open geometric problem solving process in a Dynamic Geometry Environment. With its qualitative inquiry based research design employed, the participants of the study are three pre-service teachers from 4th graders of the Department of Elementary Mathematics Teaching. In this study, clinical interviews, screencaptures of the problem solving process in the Cabri Geomery Environment, and worksheets included 2 open geometry problems have been used to collect the data. It has been investigated that all the participants passed through similar recursive phases as construction, exploration, conjecture, validate, and justification in the problem solving process. It has been thought that this study provide a new point of view to curriculum developers, teachers and researchers

Cytoplasmic protein binding to highly conserved sequences in the 3' untranslated region of mouse protamine 2 mRNA, a translationally regulated transcript of male germ cells

International Nuclear Information System (INIS)

Kwon, Y.K.; Hecht, N.B.

1991-01-01

The expression of the protamines, the predominant nuclear proteins of mammalian spermatozoa, is regulated translationally during male germ-cell development. The 3' untranslated region (UTR) of protamine 1 mRNA has been reported to control its time of translation. To understand the mechanisms controlling translation of the protamine mRNAs, we have sought to identify cis elements of the 3' UTR of protamine 2 mRNA that are recognized by cytoplasmic factors. From gel retardation assays, two sequence elements are shown to form specific RNA-protein complexes. Protein binding sites of the two complexes were determined by RNase T1 mapping, by blocking the putative binding sites with antisense oligonucleotides, and by competition assays. The sequences of these elements, located between nucleotides + 537 and + 572 in protamine 2 mRNA, are highly conserved among postmeiotic translationally regulated nuclear proteins of the mammalian testis. Two closely linked protein binding sites were detected. UV-crosslinking studies revealed that a protein of about 18 kDa binds to one of the conserved sequences. These data demonstrate specific protein binding to a highly conserved 3' UTR of translationally regulated testicular mRNA

Comparison of risk assessment methodologies for nuclear power and nuclear fuels processing plants

International Nuclear Information System (INIS)

Durant, W.S.; Walker, D.H.

1986-08-01

The utilization of nuclear fission for the generation of electric power or other purposes has as its by-product radioactive fission products. These radioactive fission products represent a potential hazard different in nature from that associated with other process operations or other methods of electrical power generation. As a result the electrical power stations and the facilities designed to process the irradiated fuel to recover the still useful fuel and the products of the irradiation are designed with multiple physical barriers to contain the radioactive fission products in the event that an accident were to occur. In recent years, a disciplined approach has evolved for developing detailed models of a facility and its processes. These models can be used to assess the response for the facility to upset or accident events. The approach is based on an ordered application of available data employing fault tree/event tree methodologies. Data and/or engineering judgment are applied in a probabilisitc framework so the approach has been called Probabilistic Risk Assessment (PRA). The approach has been applied to nuclear electric generating facilities and to nuclear fuel processing facilities to assess the potential for release of fission product and transuranium element radionuclides (the hazard) and the resulting risks. The application of the methodology to the electrical generating facilities and to the fuel processing facilities has evolved somewhat differently because of differences in the facilities, availability of failure rate data, and expected outputs. This paper summarizes the two approaches and the differences in them compares the risk results from the existing studies

Multipurpose nuclear process heat for energy supply in Brazil

International Nuclear Information System (INIS)

Hansen, U.; Inden, P.; Oesterwind, D.; Hukai, R.Y.; Pessine, R.T.; Pieroni, R.R.; Visoni, E.

1978-11-01

The industrialized nations require 75% of the energy as heat and it is likely that developing countries in the course of industrialization will show a comparable energy consumption structure. The High Temperature Reactor (HTR) allows the utilization of nuclear energy at high temperatures as process heat. In the Federal Republic of Germany (FRG) the development in the relevant technical areas is well advanced and warrants investigation as a matter for transfer to Brazil. In Brazil nuclear process heat finds possible applications in steel making, shale oil extraction, petroleum refining, and in the more distant future coal gasification with distribution networks. Based on growth forecasts for these industries a theoretical potential market of 38-53 GW (th) can be identified. At present nuclear process heat is marginally more expensive than conventional fossil technologies but the anticipated development is expected to add an economic incentive to the emerging necessity of providing a sound energy base in the developing countries. (author)

Pre-test analysis results of a PWR steel lined pre-stressed concrete containment model

International Nuclear Information System (INIS)

Basha, S.M.; Ghosh, Barnali; Patnaik, R.; Ramanujam, S.; Singh, R.K.; Kushwaha, H.S.; Venkat Raj, V.

2000-02-01

Pre-stressed concrete nuclear containment serves as the ultimate barrier against the release of radioactivity to the environment. This ultimate barrier must be checked for its ultimate load carrying capacity. BARC participated in a Round Robin analysis activity which is co-sponsored by Sandia National Laboratory, USA and Nuclear Power Engineering Corporation Japan for the pre-test prediction of a 1:4 size Pre-stressed Concrete Containment Vessel. In house finite element code ULCA was used to make the test predictions of displacements and strains at the standard output locations. The present report focuses on the important landmarks of the pre-test results, in sequential terms of first crack appearance, loss of pre-stress, first through thickness crack, rebar and liner yielding and finally liner tearing at the ultimate load. Global and local failure modes of the containment have been obtained from the analysis. Finally sensitivity of the numerical results with respect to different types of liners and different constitutive models in terms of bond strength between concrete and steel and tension-stiffening parameters are examined. The report highlights the important features which could be observed during the test and guidelines are given for improving the prediction in the post test computation after the test data is available. (author)

The importance of environmental education in the process of nuclear and environmental licensing of nuclear facilities

International Nuclear Information System (INIS)

Araujo, Jefferson Borges; Ribeiro, Katia Maria Bruno

2009-01-01

Today, there is a thread with regard to the global environment. To reduce the environmental impact due to spending supplies to meet the basic needs of the global population. Can be considered as the power of these needs and in this context, the environmental impact occurs by the use of fossil fuels and loss of land for use of water resources. To minimize these impacts, governments are establishing appropriate laws towards the use of renewable energy. However it appears that there is still a great distance between the established law and implementation in practice. In this context nuclear energy is an attractive option, both economic and environmental. The facilities that are somehow associated with nuclear power plants are classified as radioactive or nuclear. These facilities are subject to two licensing procedures: Environmental (by IBAMA) and Nuclear (by CNEN). Nuclear installations such as nuclear power plants Angra 1 and 2, deposits and tailings facilities of the nuclear fuel cycle in Rezende that are more the attention of the population. As part of these processes are reports of analysis of safety and environmental impacts and socio-economic (EIA/RIMA RFAS), which are available to the public and then discussed at public hearings, where there is the opportunity for questions on these reports. These questions are mainly related with the social-environmental and economic due to construction and operation of these facilities. This work is a research, discussing the law, identifying the difficulties in the licensing process and presents a discussion on the importance of environmental education at all school levels, for adult audiences and is a connection between the environmental education and process of environmental licensing and nuclear, showing how the popular consciousness more informed can better discuss issues associated with these licenses, understand the advantages and disadvantages and obtain benefits. (author)

Modeling closed nuclear fuel cycles processes

Energy Technology Data Exchange (ETDEWEB)

Shmidt, O.V. [A.A. Bochvar All-Russian Scientific Research Institute for Inorganic Materials, Rogova, 5a street, Moscow, 123098 (Russian Federation); Makeeva, I.R. [Zababakhin All-Russian Scientific Research Institute of Technical Physics, Vasiliev street 13, Snezhinsk, Chelyabinsk region, 456770 (Russian Federation); Liventsov, S.N. [Tomsk Polytechnic University, Tomsk, Lenin Avenue, 30, 634050 (Russian Federation)

2016-07-01

Computer models of processes are necessary for determination of optimal operating conditions for closed nuclear fuel cycle (NFC) processes. Computer models can be quickly changed in accordance with new and fresh data from experimental research. 3 kinds of process simulation are necessary. First, the VIZART software package is a balance model development used for calculating the material flow in technological processes. VIZART involves taking into account of equipment capacity, transport lines and storage volumes. Secondly, it is necessary to simulate the physico-chemical processes that are involved in the closure of NFC. The third kind of simulation is the development of software that allows the optimization, diagnostics and control of the processes which implies real-time simulation of product flows on the whole plant or on separate lines of the plant. (A.C.)

Maintenance of process instrumentation in nuclear power plants

International Nuclear Information System (INIS)

Hashemian, H.M.

2006-01-01

The resurgence of the nuclear power industry at a time when the nuclear plant I and C workforce is diminishing due to aging and retirements has been the motivation for writing this book. This book compiles 30 years of practical knowledge gained by the author and his staff in testing the I and C systems of nuclear power plants around the world. It focuses on process temperature and pressure sensors and the verification of these sensors' calibration and response time. In spite of great advances in electronics, computers, and measurement technologies, important process parameters such as temperature and pressure are still measured with conventional sensing techniques found in RTDs, thermocouples, and conventional pressure and differential pressure sensors. Furthermore, no improved technology providing comparable performance is currently on the horizon. Therefore, it is important to understand how these sensors function and the testing techniques for verifying their performance. This book is intended to help provide this understanding. (orig.)

Ectopic expression and knocking-down of LINE-1 mRNA in human mesenchymal stem cells: impact on in vitro osteogenic and adipogenic differentiation

KAUST Repository

Atinbayeva, Nazerke

2018-05-01

There are two classes of transposable elements: DNA transposons and retrotransposons. DNA transposons spread in the genome by “cut and paste” mechanism. In contrast, retrotransposons use copy and paste strategy involving RNA and retrotranscriptase mediated mechanism; these include long interspersed nuclear elements-1 (LINE-1, L1) and short interspersed nuclear elements (SINE). In mammals, in order to maintain genome integrity both types of transposons are tightly repressed. However, some copies of retrotransposons are still active in germ cells contributing to natural variation. Surprisingly, recent reports indicate that also somatic cells support L1 reactivation in early development, in particular in the brain leading to mosaicism. However, whether L1 retrotransposition is a part of other cell lineage developmental programs and its functional significance in the context of cell differentiation remain to be elucidated. To address this question, I investigated whether L1 retrotransposition was occurring during in vitro osteogenic and adipogenic differentiation of bone marrow derived human mesenchymal stem cells (hMSCs). Interestingly, clinical observations have revealed loss of bone density in HIV-infected individuals treated with nucleoside analogs that inhibit HIV retrotranscriptase, as well as the endogenous one encoded by L1s. This observation made us to hypothesize that transposable elements played a positive role in post-natal bone homeostasis. I found that while adipogenesis is “retrotransposition free”, osteogenic differentiation is a “retrotransposition-prone” process and its inhibition blocks its genetic program. Indeed, L1 DNA content does not change during adipogenic differentiation and that of retrotranscriptase does not have any effect on the acquisition of a terminally differentiated phenotype. In contrast, soon after MSCs commitment into pre-osteoblasts, L1 retrotransposable elements increase their expression and actively transpose