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Sample records for nonuniform alignment patterns

  1. Pattern of diffusion-limited aggregation on nonuniform substrate

    CERN Document Server

    Ouyang Wen Ze; Zou Xian Wu; Jin Zhun Zhi

    2003-01-01

    Pattern of diffusion-limited aggregation (DLA) on nonuniform substrate was investigated by computer simulations. The nonuniform substrates are represented by Leath percolations with the probability p. p stands for the degree of nonuniformity and takes values in the range p sub c<=p<=1, where p sub c is the threshold of percolation. The DLA cluster grows up on the Leath percolation substrate. The patterns of the DLA clusters appear asymmetrical and nonuniform, and the branches are relative few for the case p is close to p sub c. In addition, the pattern depends on the shape of substrate. As p increases from p sub c to 1, cluster changes to pure DLA gradually. Correspondingly, the fractal dimension increases from 1.46 to 1.68. Also, the random walks on Leath percolations through the range p sub c<=p<=1 were examined. Our simulations show the Honda-Toyoki-Matsushita relation is still reasonable for fractional dimensional systems.

  2. Cryo-EM image alignment based on nonuniform fast Fourier transform

    International Nuclear Information System (INIS)

    Yang Zhengfan; Penczek, Pawel A.

    2008-01-01

    In single particle analysis, two-dimensional (2-D) alignment is a fundamental step intended to put into register various particle projections of biological macromolecules collected at the electron microscope. The efficiency and quality of three-dimensional (3-D) structure reconstruction largely depends on the computational speed and alignment accuracy of this crucial step. In order to improve the performance of alignment, we introduce a new method that takes advantage of the highly accurate interpolation scheme based on the gridding method, a version of the nonuniform fast Fourier transform, and utilizes a multi-dimensional optimization algorithm for the refinement of the orientation parameters. Using simulated data, we demonstrate that by using less than half of the sample points and taking twice the runtime, our new 2-D alignment method achieves dramatically better alignment accuracy than that based on quadratic interpolation. We also apply our method to image to volume registration, the key step in the single particle EM structure refinement protocol. We find that in this case the accuracy of the method not only surpasses the accuracy of the commonly used real-space implementation, but results are achieved in much shorter time, making gridding-based alignment a perfect candidate for efficient structure determination in single particle analysis

  3. Cryo-EM image alignment based on nonuniform fast Fourier transform.

    Science.gov (United States)

    Yang, Zhengfan; Penczek, Pawel A

    2008-08-01

    In single particle analysis, two-dimensional (2-D) alignment is a fundamental step intended to put into register various particle projections of biological macromolecules collected at the electron microscope. The efficiency and quality of three-dimensional (3-D) structure reconstruction largely depends on the computational speed and alignment accuracy of this crucial step. In order to improve the performance of alignment, we introduce a new method that takes advantage of the highly accurate interpolation scheme based on the gridding method, a version of the nonuniform fast Fourier transform, and utilizes a multi-dimensional optimization algorithm for the refinement of the orientation parameters. Using simulated data, we demonstrate that by using less than half of the sample points and taking twice the runtime, our new 2-D alignment method achieves dramatically better alignment accuracy than that based on quadratic interpolation. We also apply our method to image to volume registration, the key step in the single particle EM structure refinement protocol. We find that in this case the accuracy of the method not only surpasses the accuracy of the commonly used real-space implementation, but results are achieved in much shorter time, making gridding-based alignment a perfect candidate for efficient structure determination in single particle analysis.

  4. Beam pattern improvement by compensating array nonuniformities in a guided wave phased array

    International Nuclear Information System (INIS)

    Kwon, Hyu-Sang; Lee, Seung-Seok; Kim, Jin-Yeon

    2013-01-01

    This paper presents a simple data processing algorithm which can improve the performance of a uniform circular array based on guided wave transducers. The algorithm, being intended to be used with the delay-and-sum beamformer, effectively eliminates the effects of nonuniformities that can significantly degrade the beam pattern. Nonuniformities can arise intrinsically from the array geometry when the circular array is transformed to a linear array for beam steering and extrinsically from unequal conditions of transducers such as element-to-element variations of sensitivity and directivity. The effects of nonuniformities are compensated by appropriately imposing weight factors on the elements in the projected linear array. Different cases are simulated, where the improvements of the beam pattern, especially the level of the highest sidelobe, are clearly seen, and related issues are discussed. An experiment is performed which uses A0 mode Lamb waves in a steel plate, to demonstrate the usefulness of the proposed method. The discrepancy between theoretical and experimental beam patterns is explained by accounting for near-field effects. (paper)

  5. Aligned carbon nanotubes patterned photolithographically by silver

    Science.gov (United States)

    Huang, Shaoming; Mau, Albert H. W.

    2003-02-01

    Selective growth of aligned carbon nanotubes (CNTs) by pyrolysis of iron (II) phthalocyanine (FePc) on quartz substrate patterned photolithographically by metallic silver has been demonstrated. Micro/nanopattern of aligned CNTs can be achieved by using a photomask with features on a microscale. With convenient use of simple high-contract black and white films as a photomask, aligned nanotubes patterned with 20 μm resolution in large scale can be fabricated. This practical fabrication of aligned CNTs on patterned conducting substrate could be applied to various device applications of CNTs.

  6. Pattern optimizing verification of self-align quadruple patterning

    Science.gov (United States)

    Yamato, Masatoshi; Yamada, Kazuki; Oyama, Kenichi; Hara, Arisa; Natori, Sakurako; Yamauchi, Shouhei; Koike, Kyohei; Yaegashi, Hidetami

    2017-03-01

    Lithographic scaling continues to advance by extending the life of 193nm immersion technology, and spacer-type multi-patterning is undeniably the driving force behind this trend. Multi-patterning techniques such as self-aligned double patterning (SADP) and self-aligned quadruple patterning (SAQP) have come to be used in memory devices, and they have also been adopted in logic devices to create constituent patterns in the formation of 1D layout designs. Multi-patterning has consequently become an indispensible technology in the fabrication of all advanced devices. In general, items that must be managed when using multi-patterning include critical dimension uniformity (CDU), line edge roughness (LER), and line width roughness (LWR). Recently, moreover, there has been increasing focus on judging and managing pattern resolution performance from a more detailed perspective and on making a right/wrong judgment from the perspective of edge placement error (EPE). To begin with, pattern resolution performance in spacer-type multi-patterning is affected by the process accuracy of the core (mandrel) pattern. Improving the controllability of CD and LER of the mandrel is most important, and to reduce LER, an appropriate smoothing technique should be carefully selected. In addition, the atomic layer deposition (ALD) technique is generally used to meet the need for high accuracy in forming the spacer film. Advances in scaling are accompanied by stricter requirements in the controllability of fine processing. In this paper, we first describe our efforts in improving controllability by selecting the most appropriate materials for the mandrel pattern and spacer film. Then, based on the materials selected, we present experimental results on a technique for improving etching selectivity.

  7. Divergent and nonuniform gene expression patterns in mouse brain

    Science.gov (United States)

    Morris, John A.; Royall, Joshua J.; Bertagnolli, Darren; Boe, Andrew F.; Burnell, Josh J.; Byrnes, Emi J.; Copeland, Cathy; Desta, Tsega; Fischer, Shanna R.; Goldy, Jeff; Glattfelder, Katie J.; Kidney, Jolene M.; Lemon, Tracy; Orta, Geralyn J.; Parry, Sheana E.; Pathak, Sayan D.; Pearson, Owen C.; Reding, Melissa; Shapouri, Sheila; Smith, Kimberly A.; Soden, Chad; Solan, Beth M.; Weller, John; Takahashi, Joseph S.; Overly, Caroline C.; Lein, Ed S.; Hawrylycz, Michael J.; Hohmann, John G.; Jones, Allan R.

    2010-01-01

    Considerable progress has been made in understanding variations in gene sequence and expression level associated with phenotype, yet how genetic diversity translates into complex phenotypic differences remains poorly understood. Here, we examine the relationship between genetic background and spatial patterns of gene expression across seven strains of mice, providing the most extensive cellular-resolution comparative analysis of gene expression in the mammalian brain to date. Using comprehensive brainwide anatomic coverage (more than 200 brain regions), we applied in situ hybridization to analyze the spatial expression patterns of 49 genes encoding well-known pharmaceutical drug targets. Remarkably, over 50% of the genes examined showed interstrain expression variation. In addition, the variability was nonuniformly distributed across strain and neuroanatomic region, suggesting certain organizing principles. First, the degree of expression variance among strains mirrors genealogic relationships. Second, expression pattern differences were concentrated in higher-order brain regions such as the cortex and hippocampus. Divergence in gene expression patterns across the brain could contribute significantly to variations in behavior and responses to neuroactive drugs in laboratory mouse strains and may help to explain individual differences in human responsiveness to neuroactive drugs. PMID:20956311

  8. Aligned, isotropic and patterned carbon nanotube substrates that control the growth and alignment of Chinese hamster ovary cells

    Energy Technology Data Exchange (ETDEWEB)

    Abdullah, Che Azurahanim Che; Asanithi, Piyapong; Brunner, Eric W; Jurewicz, Izabela; Bo, Chiara; Sear, Richard P; Dalton, Alan B [Department of Physics and Surrey Materials Institute, University of Surrey, Guildford, Surrey GU2 7XH (United Kingdom); Azad, Chihye Lewis; Ovalle-Robles, Raquel; Fang Shaoli; Lima, Marcio D; Lepro, Xavier; Collins, Steve; Baughman, Ray H, E-mail: r.sear@surrey.ac.uk [Alan G MacDiarmid NanoTech Institute, The University of Texas at Dallas, Richardson, TX 75080-3021 (United States)

    2011-05-20

    Here we culture Chinese hamster ovary cells on isotropic, aligned and patterned substrates based on multiwall carbon nanotubes. The nanotubes provide the substrate with nanoscale topography. The cells adhere to and grow on all substrates, and on the aligned substrate, the cells align strongly with the axis of the bundles of the multiwall nanotubes. This control over cell alignment is required for tissue engineering; almost all tissues consist of oriented cells. The aligned substrates are made using straightforward physical chemistry techniques from forests of multiwall nanotubes; no lithography is required to make inexpensive large-scale substrates with highly aligned nanoscale grooves. Interestingly, although the cells strongly align with the nanoscale grooves, only a few also elongate along this axis: alignment of the cells does not require a pronounced change in morphology of the cell. We also pattern the nanotube bundles over length scales comparable to the cell size and show that the cells follow this pattern.

  9. Wettability transition of plasma-treated polystyrene micro/nano pillars-aligned patterns

    Directory of Open Access Journals (Sweden)

    2010-12-01

    Full Text Available This paper reports the wettability transition of plasma-treated polystyrene (PS micro/nano pillars-aligned patterns. The micro/nano pillars were prepared using hot embossing on silicon microporous template and alumina nanoporous template, which were fabricated by ultraviolet (UV lithography and inductive coupled plasma (ICP etching, and two-step anodic oxidation, respectively. The results indicate that the combination of micro/nano patterning and plasma irradiation can easily regulate wettabilities of PS surfaces, i.e. from hydrophilicity to hydrophobicity, or from hydrophobicity to superhydrophilicity. During the wettability transition from hydrophobicity to hydrophilicity there is only mild hydrophilicity loss. After plasma irradiation, moreover, the wettability of PS micro/nano pillars-aligned patterns is more stable than that of flat PS surfaces. The observed wettability transition and wettability stability of PS micro/nano pillars-aligned patterns are new phenomena, which may have potential in creating programmable functional polymer surfaces.

  10. Generation and Detection of Alignments in Gabor Patterns

    Directory of Open Access Journals (Sweden)

    Samy Blusseau

    2016-11-01

    Full Text Available This paper presents a method to be used in psychophysical experiments to compare directly visual perception to an a contrario algorithm, on a straight patterns detection task. The method is composed of two parts. The first part consists in building a stimulus, namely an array of oriented elements, in which an alignment is present with variable salience. The second part focuses on a detection algorithm, based on the a contrario theory, which is designed to predict which alignment will be considered as the most salient in a given stimulus.

  11. High yield growth of patterned vertically aligned carbon nanotubes using inkjet-printed catalyst.

    Science.gov (United States)

    Beard, James D; Stringer, Jonathan; Ghita, Oana R; Smith, Patrick J

    2013-10-09

    This study reports on the fabrication of vertically aligned carbon nanotubes localized at specific sites on a growth substrate by deposition of a nanoparticle suspension using inkjet printing. Carbon nanotubes were grown with high yield as vertically aligned forests to a length of approximately 400 μm. The use of inkjet printing for catalyst fabrication considerably improves the production rate of vertically aligned patterned nanotube forests compared with conventional patterning techniques, for example, electron beam lithography or photolithography.

  12. Multiciliated cell basal bodies align in stereotypical patterns coordinated by the apical cytoskeleton

    Science.gov (United States)

    Herawati, Elisa; Kanoh, Hatsuho

    2016-01-01

    Multiciliated cells (MCCs) promote fluid flow through coordinated ciliary beating, which requires properly organized basal bodies (BBs). Airway MCCs have large numbers of BBs, which are uniformly oriented and, as we show here, align linearly. The mechanism for BB alignment is unexplored. To study this mechanism, we developed a long-term and high-resolution live-imaging system and used it to observe green fluorescent protein–centrin2–labeled BBs in cultured mouse tracheal MCCs. During MCC differentiation, the BB array adopted four stereotypical patterns, from a clustering “floret” pattern to the linear “alignment.” This alignment process was correlated with BB orientations, revealed by double immunostaining for BBs and their asymmetrically associated basal feet (BF). The BB alignment was disrupted by disturbing apical microtubules with nocodazole and by a BF-depleting Odf2 mutation. We constructed a theoretical model, which indicated that the apical cytoskeleton, acting like a viscoelastic fluid, provides a self-organizing mechanism in tracheal MCCs to align BBs linearly for mucociliary transport. PMID:27573463

  13. Field nonuniformity correction for quantitative analysis of digitized mammograms

    International Nuclear Information System (INIS)

    Pawluczyk, Olga; Yaffe, Martin J.

    2001-01-01

    Several factors, including the heel effect, variation in distance from the x-ray source to points in the image and path obliquity contribute to the signal nonuniformity of mammograms. To best use digitized mammograms for quantitative image analysis, these field non-uniformities must be corrected. An empirically based correction method, which uses a bowl-shaped calibration phantom, has been developed. Due to the annular spherical shape of the phantom, its attenuation is constant over the entire image. Remaining nonuniformities are due only to the heel and inverse square effects as well as the variable path through the beam filter, compression plate and image receptor. In logarithmic space, a normalized image of the phantom can be added to mammograms to correct for these effects. Then, an analytical correction for path obliquity in the breast can be applied to the images. It was found that the correction causes the errors associated with field nonuniformity to be reduced from 14% to 2% for a 4 cm block of material corresponding to a combination of 50% fibroglandular and 50% fatty breast tissue. A repeatability study has been conducted to show that in regions as far as 20 cm away from the chest wall, variations due to imaging conditions and phantom alignment contribute to <2% of overall corrected signal

  14. Adding muscle where you need it: non-uniform hypertrophy patterns in elite sprinters.

    Science.gov (United States)

    Handsfield, G G; Knaus, K R; Fiorentino, N M; Meyer, C H; Hart, J M; Blemker, S S

    2017-10-01

    Sprint runners achieve much higher gait velocities and accelerations than average humans, due in part to large forces generated by their lower limb muscles. Various factors have been explored in the past to understand sprint biomechanics, but the distribution of muscle volumes in the lower limb has not been investigated in elite sprinters. In this study, we used non-Cartesian MRI to determine muscle sizes in vivo in a group of 15 NCAA Division I sprinters. Normalizing muscle sizes by body size, we compared sprinter muscles to non-sprinter muscles, calculated Z-scores to determine non-uniformly large muscles in sprinters, assessed bilateral symmetry, and assessed gender differences in sprinters' muscles. While limb musculature per height-mass was 22% greater in sprinters than in non-sprinters, individual muscles were not all uniformly larger. Hip- and knee-crossing muscles were significantly larger among sprinters (mean difference: 30%, range: 19-54%) but only one ankle-crossing muscle was significantly larger (tibialis posterior, 28%). Population-wide asymmetry was not significant in the sprint population but individual muscle asymmetries exceeded 15%. Gender differences in normalized muscle sizes were not significant. The results of this study suggest that non-uniform hypertrophy patterns, particularly large hip and knee flexors and extensors, are advantageous for fast sprinting. © 2016 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

  15. Characterization and Processing of Non-Uniformities in Back-Illuminated CCDs

    Science.gov (United States)

    Lemm, Alia D.; Della-Rose, Devin J.; Maddocks, Sally

    2018-01-01

    In astronomical photometry, Charged Coupled Device (CCD) detectors are used to achieve high precision photometry and must be properly calibrated to correct for noise and pixel non-uniformities. Uncalibrated images may contain bias offset, dark current, bias structure and uneven illumination. In addition, standard data reduction is often not sufficient to “normalize” imagery to single-digit millimagnitude (mmag) precision. We are investigating an apparent non-uniformity, or interference pattern, in a back-illuminated sensor, the Alta U-47, attached to a DFM Engineering 41-cm Ritchey-Chrétien f/8 telescope. Based on the amplitude of this effect, we estimate that instrument magnitude peak-to-valley deviations of 50 mmag or more may result. Our initial testing strongly suggests that reflected skylight from high pressure sodium city lights may be the cause of this interference pattern. Our research goals are twofold: to fully characterize this non-uniformity and to determine the best method to remove this interference pattern from our reduced CCD images.

  16. Pattern recognition in complex activity travel patterns : comparison of Euclidean distance, signal-processing theoretical, and multidimensional sequence alignment methods

    NARCIS (Netherlands)

    Joh, C.H.; Arentze, T.A.; Timmermans, H.J.P.

    2001-01-01

    The application of a multidimensional sequence alignment method for classifying activity travel patterns is reported. The method was developed as an alternative to the existing classification methods suggested in the transportation literature. The relevance of the multidimensional sequence alignment

  17. Self-alignment of RFID dies on four-pad patterns with water droplet for sparse self-assembly

    International Nuclear Information System (INIS)

    Chang, Bo; Routa, Iiris; Sariola, Veikko; Zhou, Quan

    2011-01-01

    This paper reports an in-depth study of a water-droplet-assisted self-alignment technique that self-aligns radio frequency identification (RFID) dies on four-pad patterns. The segmented structure of four hydrophilic pads on a hydrophobic substrate brings freedom to the design of the electrical functionality and the surface functionality. The paper investigates the influence of the key parameters that may affect the self-alignment in theory and experiment. The theoretical model justifies that RFID dies can be reliably aligned on the segmented four-pad pattern even when the initial placement error is as large as 50% of the size of the die and the gap between the four pads is about 10% of the size of the die. A method has been introduced to estimate the sufficient droplet volume for self-alignment. A series of experiments have been carried out to verify the results of the model. The experiments indicate that the self-alignment between the 730 × 730 µm RFID dies and the pattern occurs reliably when the releasing bias between the RFID die and antenna is less than 400 µm for patterns with 50 and 100 µm gaps, and successful self-alignment is possible even with greater bias of 500 µm

  18. The influence of conductivities consistent with field-aligned currents on high-latitude convection patterns

    International Nuclear Information System (INIS)

    Blomberg, L.G.; Marklund, G.T.

    1988-02-01

    The influence on the high-latitude ionospheric convection of conductivities associated with upward field-aligned currents is investigated. Potential patterns are calculated from a given distribution of field-aligned currents and a conductivity model. The resulting patterns are shown to be modified considerably by including a coupling term between the conductivity and the field-aligned current in the conductivity model. The clockwise rotation of the entire potential pattern is reduced when the conductivity enhancement coincides with the regions of upward field-aligned current. Also, the electric field within these regions turns out to be rather insensitive to change in the magnitude of the current. In regions of downward current or when the current-dependent conductivity is excluded there is on the other hand an almost linear relationship between current and electric field. Although the particles producing the conductivity enhancement may not be the same as those carrying the major part of the field-aligned current it is clear from observations that there is a positive correlation between upward current conductivity. Therefore, the simple relationship used in this study is believed to reflect rather well the principal features of the current-conductivity coupling, which is of im- portance to the modelling of ionospheric electrodynamics. (With 26 refs.) (authors)

  19. Hohlraum Target Alignment from X-ray Detector Images using Starburst Design Patterns

    International Nuclear Information System (INIS)

    Leach, R.R.; Conder, A.; Edwards, O.; Kroll, J.; Kozioziemski, B.; Mapoles, E.; McGuigan, D.; Wilhelmsen, K.

    2010-01-01

    National Ignition Facility (NIF) is a high-energy laser facility comprised of 192 laser beams focused with enough power and precision on a hydrogen-filled spherical, cryogenic target to initiate a fusion reaction. The target container, or hohlraum, must be accurately aligned to an x-ray imaging system to allow careful monitoring of the frozen fuel layer in the target. To achieve alignment, x-ray images are acquired through starburst-shaped windows cut into opposite sides of the hohlraum. When the hohlraum is in alignment, the starburst pattern pairs match nearly exactly and allow a clear view of the ice layer formation on the edge of the target capsule. During the alignment process, x-ray image analysis is applied to determine the direction and magnitude of adjustment required. X-ray detector and source are moved in concert during the alignment process. The automated pointing alignment system described here is both accurate and efficient. In this paper, we describe the control and associated image processing that enables automation of the starburst pointing alignment.

  20. Self-aligned blocking integration demonstration for critical sub-30nm pitch Mx level patterning with EUV self-aligned double patterning

    Science.gov (United States)

    Raley, Angélique; Lee, Joe; Smith, Jeffrey T.; Sun, Xinghua; Farrell, Richard A.; Shearer, Jeffrey; Xu, Yongan; Ko, Akiteru; Metz, Andrew W.; Biolsi, Peter; Devilliers, Anton; Arnold, John; Felix, Nelson

    2018-04-01

    We report a sub-30nm pitch self-aligned double patterning (SADP) integration scheme with EUV lithography coupled with self-aligned block technology (SAB) targeting the back end of line (BEOL) metal line patterning applications for logic nodes beyond 5nm. The integration demonstration is a validation of the scalability of a previously reported flow, which used 193nm immersion SADP targeting a 40nm pitch with the same material sets (Si3N4 mandrel, SiO2 spacer, Spin on carbon, spin on glass). The multi-color integration approach is successfully demonstrated and provides a valuable method to address overlay concerns and more generally edge placement error (EPE) as a whole for advanced process nodes. Unbiased LER/LWR analysis comparison between EUV SADP and 193nm immersion SADP shows that both integrations follow the same trend throughout the process steps. While EUV SADP shows increased LER after mandrel pull, metal hardmask open and dielectric etch compared to 193nm immersion SADP, the final process performance is matched in terms of LWR (1.08nm 3 sigma unbiased) and is only 6% higher than 193nm immersion SADP for average unbiased LER. Using EUV SADP enables almost doubling the line density while keeping most of the remaining processes and films unchanged, and provides a compelling alternative to other multipatterning integrations, which present their own sets of challenges.

  1. Molecular structure determination from x-ray scattering patterns of laser-aligned symmetric-top molecules

    International Nuclear Information System (INIS)

    Ho, P. J.; Starodub, D.; Saldin, D. K.; Shneerson, V. L.; Ourmazd, A.; Santra, R.

    2009-01-01

    We investigate the molecular structure information contained in the x-ray diffraction patterns of an ensemble of rigid CF 3 Br molecules aligned by an intense laser pulse at finite rotational temperature. The diffraction patterns are calculated at an x-ray photon energy of 20 keV to probe molecular structure at angstrom-scale resolution. We find that a structural reconstruction algorithm based on iterative phase retrieval fails to extract a reliable structure. However, the high atomic number of Br compared with C or F allows each diffraction pattern to be treated as a hologram. Using this approach, the azimuthal projection of the molecular electron density about the alignment axis may be retrieved.

  2. Influence Of Nonuniformity On Infrared Focal Plane Array Performance

    Science.gov (United States)

    Milton, A. F.; Barone, F. R.; Kruer, M. R.

    1985-08-01

    It is well known that detector response nonuniformity results in pattern noise with staring sensors that is a severe problem in the infrared due to the low intrinsic contrast of IR imagery. The pattern noise can be corrected by electronic processing; however, the ability to correct for pattern noise is limited by the interaction of interscene and intrascene variability with the dynamic range of the processor (number of bits) and, depending upon the algorithm used, by nonlinearities in the detector response. This paper quantifies these limitations and describes the interaction of detector gain nonuniformity and detector nonlinearities. Probabilistic models are developed to determine the maximum sensitivity that can be obtained using a two-point algorithm to correct a nonlinear response curve over a wide temperature range. Curves that permit a prediction of the noise equivalent differential temperature (NEAT) under varying circumstances are presented. A piecewise linear approach to dealing with severe detector response nonlinearities is presented and analyzed for its effectiveness.

  3. Laser micro-machining of hydrophobic-hydrophilic patterns for fluid driven self-alignment in micro-assembly

    NARCIS (Netherlands)

    Römer, Gerardus Richardus, Bernardus, Engelina; Jorritsma, Mark; Arnaldo del Cerro, D.; Chang, Bo; Liimatainen, Ville; Zhou, Quan; Huis in 't Veld, Bert

    2011-01-01

    Fluid driven self-alignment is a low cost alternative to fast but relatively inaccurate robotic pickand-place assembly of micro-fabricated components. This fluidic self-alignment technique relies on a hydrophobic-hydrophilic pattern on the surface of the receiving substrate, which confines a fluid

  4. Shear Alignment of Diblock Copolymers for Patterning Nanowire Meshes

    Energy Technology Data Exchange (ETDEWEB)

    Gustafson, Kyle T. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)

    2016-09-08

    Metallic nanowire meshes are useful as cheap, flexible alternatives to indium tin oxide – an expensive, brittle material used in transparent conductive electrodes. We have fabricated nanowire meshes over areas up to 2.5 cm2 by: 1) mechanically aligning parallel rows of diblock copolymer (diBCP) microdomains; 2) selectively infiltrating those domains with metallic ions; 3) etching away the diBCP template; 4) sintering to reduce ions to metal nanowires; and, 5) repeating steps 1 – 4 on the same sample at a 90° offset. We aligned parallel rows of polystyrene-b-poly(2-vinylpyridine) [PS(48.5 kDa)-b-P2VP(14.5 kDa)] microdomains by heating above its glass transition temperature (Tg ≈ 100°C), applying mechanical shear pressure (33 kPa) and normal force (13.7 N), and cooling below Tg. DiBCP samples were submerged in aqueous solutions of metallic ions (15 – 40 mM ions; 0.1 – 0.5 M HCl) for 30 – 90 minutes, which coordinate to nitrogen in P2VP. Subsequent ozone-etching and sintering steps yielded parallel nanowires. We aimed to optimize alignment parameters (e.g. shear and normal pressures, alignment duration, and PDMS thickness) to improve the quality, reproducibility, and scalability of meshes. We also investigated metals other than Pt and Au that may be patterned using this technique (Cu, Ag).

  5. Liquid Crystal Microlens Using Nanoparticle-Induced Vertical Alignment

    Directory of Open Access Journals (Sweden)

    Shug-June Hwang

    2015-01-01

    Full Text Available The nanoparticle-induced vertical alignment (NIVA of the nematic liquid crystals (LC is applied to achieve an adaptive flat LC microlens with hybrid-aligned nematic (HAN mode by dropping polyhedral oligomeric silsesquioxane (POSS nanoparticle solution on a homogeneous alignment layer. The vertical alignment induced by the POSS nanoparticles resulted in the formation of a hybrid-aligned LC layer with concentric nonuniform distribution of the refractive index in the planar LC cell, which subsequently played the role of the lens, even in the absence of any applied voltages. The dimensions of the concentric HAN structure significantly depend on the volume of the microdroplet and the POSS concentration. The focus effect of this flat microlens was observed while electrically controlling its focal length using the applied voltages from −50 mm to −90 mm.

  6. Understanding the critical challenges of self-aligned octuple patterning

    Science.gov (United States)

    Yu, Ji; Xiao, Wei; Kang, Weiling; Chen, Yijian

    2014-03-01

    In this paper, we present a thorough investigation of self-aligned octuple patterning (SAOP) process characteristics, cost structure, integration challenges, and layout decomposition. The statistical characteristics of SAOP CD variations such as multi-modality are analyzed and contributions from various features to CDU and MTT (mean-to-target) budgets are estimated. The gap space is found to have the worst CDU+MTT performance and is used to determine the required overlay accuracy to ensure a satisfactory edge-placement yield of a cut process. Moreover, we propose a 5-mask positive-tone SAOP (pSAOP) process for memory FEOL patterning and a 3-mask negative-tone SAOP (nSAOP) process for logic BEOL patterning. The potential challenges of 2-D SAOP layout decomposition for BEOL applications are identified. Possible decomposition approaches are explored and the functionality of several developed algorithm is verified using 2-D layout examples from Open Cell Library.

  7. Investigation of Non-Uniform Rust Distribution and Its Effects on Corrosion Induced Cracking in Reinforced Concrete

    Directory of Open Access Journals (Sweden)

    Sutrisno Wahyuniarsih

    2017-01-01

    Full Text Available Uniform corrosion still widely used by a lot of researchers and engineers to analyze the corrosion induced cracking. However, in practice, corrosion process occurred non-uniformly. The part nearest to the exposed surface is more likely to have faster corrosion initiation compared with other regions. This research is mainly focused on investigating the effect of non-uniform rust distribution to cover cracking in reinforced concrete. An experimental test performed using accelerated corrosion test by using 5% NaCl solution and applied a constant electric current to the concrete samples. The rust distribution and measurement were observed by using a digital microscope. Based on the experimental result, it was found that the rust was distributed in a non-uniform pattern. As a result, the cracks also formed non-uniformly along the perimeter of steel bar. At the last part of this paper, a simulation result of concrete cracking induced by non-uniform corrosion is presented. The result compared with a simulation using uniform corrosion assumption to investigate the damage pattern of each model. The simulation result reveals stress evolution due to rust expansion which leads to concrete cracking. Furthermore, a comparison of stresses induced by non-uniform corrosion and uniform corrosion indicates that non-uniform corrosion could lead to earlier damage to the structure which is specified by the formation and propagation of the crack.

  8. Modified alignment CGHs for aspheric surface test

    Science.gov (United States)

    Song, Jae-Bong; Yang, Ho-Soon; Rhee, Hyug-Gyo; Lee, Yun-Woo

    2009-08-01

    Computer Generated Holograms (CGH) for optical test are commonly consisted of one main pattern for testing aspheric surface and some alignment patterns for aligning the interferometer, CGH, and the test optics. To align the CGH plate and the test optics, we designed the alignment CGHs modified from the cat's eye alignment method, which are consisted of a couple of CGH patterns. The incident beam passed through the one part of the alignment CGH pattern is focused onto the one radius position of the test aspheric surface, and is reflected to the other part, and vice versa. This method has several merits compared to the conventional cat's eye alignment method. First, this method can be used in testing optics with a center hole, and the center part of CGH plate can be assigned to the alignment pattern. Second, the alignment pattern becomes a concentric circular arc pattern. The whole CGH patterns including the main pattern and alignment patterns are consisted of only concentric circular fringes. This concentric circular pattern can be easily made by the polar coordinated writer with circular scanning. The required diffraction angle becomes relatively small, so the 1st order diffraction beams instead of the 3rd order diffraction beam can be used as alignment beams, and the visibility can be improved. This alignment method also is more sensitive to the tilt and the lateral shift of the test aspheric surface. Using this alignment pattern, a 200 mm diameter F/0.5 aspheric mirror and a 600 mm diameter F/0.9 mirror were tested.

  9. Linear q-nonuniform difference equations

    International Nuclear Information System (INIS)

    Bangerezako, Gaspard

    2010-01-01

    We introduce basic concepts of q-nonuniform differentiation and integration and study linear q-nonuniform difference equations and systems, as well as their application in q-nonuniform difference linear control systems. (author)

  10. An efficient shutter-less non-uniformity correction method for infrared focal plane arrays

    Science.gov (United States)

    Huang, Xiyan; Sui, Xiubao; Zhao, Yao

    2017-02-01

    The non-uniformity response in infrared focal plane array (IRFPA) detectors has a bad effect on images with fixed pattern noise. At present, it is common to use shutter to prevent from radiation of target and to update the parameters of non-uniformity correction in the infrared imaging system. The use of shutter causes "freezing" image. And inevitably, there exists the problems of the instability and reliability of system, power consumption, and concealment of infrared detection. In this paper, we present an efficient shutter-less non-uniformity correction (NUC) method for infrared focal plane arrays. The infrared imaging system can use the data gaining in thermostat to calculate the incident infrared radiation by shell real-timely. And the primary output of detector except the shell radiation can be corrected by the gain coefficient. This method has been tested in real infrared imaging system, reaching high correction level, reducing fixed pattern noise, adapting wide temperature range.

  11. Spike Pattern Recognition for Automatic Collimation Alignment

    CERN Document Server

    Azzopardi, Gabriella; Salvachua Ferrando, Belen Maria; Mereghetti, Alessio; Redaelli, Stefano; CERN. Geneva. ATS Department

    2017-01-01

    The LHC makes use of a collimation system to protect its sensitive equipment by intercepting potentially dangerous beam halo particles. The appropriate collimator settings to protect the machine against beam losses relies on a very precise alignment of all the collimators with respect to the beam. The beam center at each collimator is then found by touching the beam halo using an alignment procedure. Until now, in order to determine whether a collimator is aligned with the beam or not, a user is required to follow the collimator’s BLM loss data and detect spikes. A machine learning (ML) model was trained in order to automatically recognize spikes when a collimator is aligned. The model was loosely integrated with the alignment implementation to determine the classification performance and reliability, without effecting the alignment process itself. The model was tested on a number of collimators during this MD and the machine learning was able to output the classifications in real-time.

  12. An Advanced Electrospinning Method of Fabricating Nanofibrous Patterned Architectures with Controlled Deposition and Desired Alignment

    Science.gov (United States)

    Rasel, Sheikh Md

    We introduce a versatile advanced method of electrospinning for fabricating various kinds of nanofibrous patterns along with desired alignment, controlled amount of deposition and locally variable density into the architectures. In this method, we employed multiple electrodes whose potentials have been altered in milliseconds with the help of microprocessor based control system. Therefore, key success of this method was that the electrical field as well as charge carrying fibers could be switched shortly from one electrode's location to another, as a result, electrospun fibers could be deposited on the designated areas with desired alignment. A wide range of nanofibrous patterned architectures were constructed using proper arrangement of multiple electrodes. By controlling the concurrent activation time of two adjacent electrodes, we demonstrated that amount of fibers going into the pattern can be adjusted and desired alignment in electrospun fibers can be obtained. We also revealed that the deposition density of electrospun fibers in different areas of patterned architectures can be varied. We showed that by controlling the deposition time between two adjacent electrodes, a number of functionally graded patterns can be generated with uniaxial alignment. We also demonstrated that this handy method was capable of producing random, aligned, and multidirectional nanofibrous mats by engaging a number of electrodes and switching them in desired patterns. A comprehensive study using finite element method was carried out to understand the effects of electrical field. Simulation results revealed that electrical field strength alters shortly based on electrode control switch patterns. Nanofibrous polyvinyl alcohol (PVA) scaffolds and its composite reinforced with wollastonite and wood flour were fabricated using rotating drum electrospinning technique. Morphological, mechanical, and thermal, properties were characterized on PVA/wollastonite and PVA/wood flour nanocomposites

  13. Patterned forests of vertically-aligned multiwalled carbon nanotubes using metal salt catalyst solutions.

    Science.gov (United States)

    Garrett, David J; Flavel, Benjamin S; Baronian, Keith H R; Downard, Alison J

    2013-01-01

    A simple method for producing patterned forests of multiwalled carbon nanotubes (MWCNTs) is described. An aqueous metal salt solution is spin-coated onto a substrate patterned with photoresist by standard methods. The photoresist is removed by acetone washing leaving the acetone-insoluble catalyst pattern on the substrate. Dense forests of vertically aligned (VA) MWCNTs are grown on the patterned catalyst layers by chemical vapour deposition. The procedures have been demonstrated by growing MWCNT forests on two substrates: silicon and conducting graphitic carbon films. The forests adhere strongly to the substrates and when grown directly on carbon film, offer a simple method of preparing MWCNT electrodes.

  14. Unexpected alignment patterns in high-j intruder bands evidence for a strong residual neutron proton interaction?

    International Nuclear Information System (INIS)

    Wyss, R.; Johnson, A.; Royal Inst. of Tech., Stockholm

    1990-01-01

    The alignment of h 11/12 protons in νi 13/2 intruder bands in mass A = 130 region is investigated. The lack of a clear h 11/12 band crossing is compared with the alignment pattern of i 13/2 neutrons in πi 13/2 intruder bands in mass A = 180 region. The very smooth rise in angular momentum in the intruder bands is related to a possible neutron proton interaction between the single intruder orbital and the aligned two-quasiparticle configuration. 36 refs., 3 figs

  15. Joint de-blurring and nonuniformity correction method for infrared microscopy imaging

    Science.gov (United States)

    Jara, Anselmo; Torres, Sergio; Machuca, Guillermo; Ramírez, Wagner; Gutiérrez, Pablo A.; Viafora, Laura A.; Godoy, Sebastián E.; Vera, Esteban

    2018-05-01

    In this work, we present a new technique to simultaneously reduce two major degradation artifacts found in mid-wavelength infrared microscopy imagery, namely the inherent focal-plane array nonuniformity noise and the scene defocus presented due to the point spread function of the infrared microscope. We correct both nuisances using a novel, recursive method that combines the constant range nonuniformity correction algorithm with a frame-by-frame deconvolution approach. The ability of the method to jointly compensate for both nonuniformity noise and blur is demonstrated using two different real mid-wavelength infrared microscopic video sequences, which were captured from two microscopic living organisms using a Janos-Sofradir mid-wavelength infrared microscopy setup. The performance of the proposed method is assessed on real and simulated infrared data by computing the root mean-square error and the roughness-laplacian pattern index, which was specifically developed for the present work.

  16. An anisotropically and heterogeneously aligned patterned electrospun scaffold with tailored mechanical property and improved bioactivity for vascular tissue engineering.

    Science.gov (United States)

    Xu, He; Li, Haiyan; Ke, Qinfei; Chang, Jiang

    2015-04-29

    The development of vascular scaffolds with controlled mechanical properties and stimulatory effects on biological activities of endothelial cells still remains a significant challenge to vascular tissue engineering. In this work, we reported an innovative approach to prepare a new type of vascular scaffolds with anisotropically and heterogeneously aligned patterns using electrospinning technique with unique wire spring templates, and further investigated the structural effects of the patterned electrospun scaffolds on mechanical properties and angiogenic differentiation of human umbilical vein endothelial cells (HUVECs). Results showed that anisotropically aligned patterned nanofibrous structure was obtained by depositing nanofibers on template in a structurally different manner, one part of nanofibers densely deposited on the embossments of wire spring and formed cylindrical-like structures in the transverse direction, while others loosely suspended and aligned along the longitudinal direction, forming a three-dimensional porous microstructure. We further found that such structures could efficiently control the mechanical properties of electrospun vascular scaffolds in both longitudinal and transverse directions by altering the interval distances between the embossments of patterned scaffolds. When HUVECs were cultured on scaffolds with different microstructures, the patterned scaffolds distinctively promoted adhesion of HUVECs at early stage and proliferation during the culture period. Most importantly, cells experienced a large shape change associated with cell cytoskeleton and nuclei remodeling, leading to a stimulatory effect on angiogenesis differentiation of HUVECs by the patterned microstructures of electrospun scaffolds, and the scaffolds with larger distances of intervals showed a higher stimulatory effect. These results suggest that electrospun scaffolds with the anisotropically and heterogeneously aligned patterns, which could efficiently control the

  17. A DSP-based neural network non-uniformity correction algorithm for IRFPA

    Science.gov (United States)

    Liu, Chong-liang; Jin, Wei-qi; Cao, Yang; Liu, Xiu

    2009-07-01

    An effective neural network non-uniformity correction (NUC) algorithm based on DSP is proposed in this paper. The non-uniform response in infrared focal plane array (IRFPA) detectors produces corrupted images with a fixed-pattern noise(FPN).We introduced and analyzed the artificial neural network scene-based non-uniformity correction (SBNUC) algorithm. A design of DSP-based NUC development platform for IRFPA is described. The DSP hardware platform designed is of low power consumption, with 32-bit fixed point DSP TMS320DM643 as the kernel processor. The dependability and expansibility of the software have been improved by DSP/BIOS real-time operating system and Reference Framework 5. In order to realize real-time performance, the calibration parameters update is set at a lower task priority then video input and output in DSP/BIOS. In this way, calibration parameters updating will not affect video streams. The work flow of the system and the strategy of real-time realization are introduced. Experiments on real infrared imaging sequences demonstrate that this algorithm requires only a few frames to obtain high quality corrections. It is computationally efficient and suitable for all kinds of non-uniformity.

  18. Desynchronization boost by non-uniform coordinated reset stimulation in ensembles of pulse-coupled neurons

    Science.gov (United States)

    Lücken, Leonhard; Yanchuk, Serhiy; Popovych, Oleksandr V.; Tass, Peter A.

    2013-01-01

    Several brain diseases are characterized by abnormal neuronal synchronization. Desynchronization of abnormal neural synchrony is theoretically compelling because of the complex dynamical mechanisms involved. We here present a novel type of coordinated reset (CR) stimulation. CR means to deliver phase resetting stimuli at different neuronal sub-populations sequentially, i.e., at times equidistantly distributed in a stimulation cycle. This uniform timing pattern seems to be intuitive and actually applies to the neural network models used for the study of CR so far. CR resets the population to an unstable cluster state from where it passes through a desynchronized transient, eventually resynchronizing if left unperturbed. In contrast, we show that the optimal stimulation times are non-uniform. Using the model of weakly pulse-coupled neurons with phase response curves, we provide an approach that enables to determine optimal stimulation timing patterns that substantially maximize the desynchronized transient time following the application of CR stimulation. This approach includes an optimization search for clusters in a low-dimensional pulse coupled map. As a consequence, model-specific non-uniformly spaced cluster states cause considerably longer desynchronization transients. Intriguingly, such a desynchronization boost with non-uniform CR stimulation can already be achieved by only slight modifications of the uniform CR timing pattern. Our results suggest that the non-uniformness of the stimulation times can be a medically valuable parameter in the calibration procedure for CR stimulation, where the latter has successfully been used in clinical and pre-clinical studies for the treatment of Parkinson's disease and tinnitus. PMID:23750134

  19. Numerical analysis of blood flow in realistic arteries subjected to strong non-uniform magnetic fields

    International Nuclear Information System (INIS)

    Kenjeres, Sasa

    2008-01-01

    The paper reports on a comprehensive mathematical model for simulations of blood flow under the presence of strong non-uniform magnetic fields. The model consists of a set of Navier-Stokes equations accounting for the Lorentz and magnetisation forces, and a simplified set of Maxwell's equations (Biot-Savart/Ampere's law) for treating the imposed magnetic fields. The relevant hydrodynamic and electromagnetic properties of human blood were taken from the literature. The model is then validated for different test cases ranging from a simple cylindrical geometry to real-life right-coronary arteries in humans. The time-dependency of the wall-shear-stress for different stenosis growth rates and the effects of the imposed strong non-uniform magnetic fields on the blood flow pattern are presented and analysed. It is concluded that an imposed non-uniform magnetic field can create significant changes in the secondary flow patterns, thus making it possible to use this technique for optimisations of targeted drug delivery

  20. Viewing angle switching of patterned vertical alignment liquid crystal display

    International Nuclear Information System (INIS)

    Lim, Young Jin; Jeong, Eun; Chin, Mi Hyung; Lee, Seung Hee; Ji, Seunghoon; Lee, Gi-Dong

    2008-01-01

    Viewing angle control of a patterned vertical alignment (PVA) liquid crystal display using only one panel is investigated. In conventional PVA modes, a vertically aligned liquid crystal (LC) director tilts down in four directions making 45 deg. with respect to crossed polarizers to exhibit a wide viewing angle. In the viewing angle control device, one pixel was divided into two sub-pixels such that the LC director in the main pixel is controlled to be tilted down in multiple directions making an angle with the polarizer, playing the role of main display with the wide viewing angle, while the LC director in the sub-pixel is controlled to be tilted down to the polarizer axis, playing the role of sub-pixel to the viewing angle control for the narrow viewing angle. Using sub-pixel control, light leakage or any type of information such as characters and image can be generated in oblique viewing directions without distorting the image quality in the normal direction, which will prevent others from peeping at the displayed image by overlapping the displayed image with the made image

  1. Laser-assisted simultaneous transfer and patterning of vertically aligned carbon nanotube arrays on polymer substrates for flexible devices.

    Science.gov (United States)

    In, Jung Bin; Lee, Daeho; Fornasiero, Francesco; Noy, Aleksandr; Grigoropoulos, Costas P

    2012-09-25

    We demonstrate a laser-assisted dry transfer technique for assembling patterns of vertically aligned carbon nanotube arrays on a flexible polymeric substrate. A laser beam is applied to the interface of a nanotube array and a polycarbonate sheet in contact with one another. The absorbed laser heat promotes nanotube adhesion to the polymer in the irradiated regions and enables selective pattern transfer. A combination of the thermal transfer mechanism with rapid direct writing capability of focused laser beam irradiation allows us to achieve simultaneous material transfer and direct micropatterning in a single processing step. Furthermore, we demonstrate that malleability of the nanotube arrays transferred onto a flexible substrate enables post-transfer tailoring of electric conductance by collapsing the aligned nanotubes in different directions. This work suggests that the laser-assisted transfer technique provides an efficient route to using vertically aligned nanotubes as conductive elements in flexible device applications.

  2. Instruction sequence based non-uniform complexity classes

    NARCIS (Netherlands)

    Bergstra, J.A.; Middelburg, C.A.

    2013-01-01

    We present an approach to non-uniform complexity in which single-pass instruction sequences play a key part, and answer various questions that arise from this approach. We introduce several kinds of non-uniform complexity classes. One kind includes a counterpart of the well-known non-uniform

  3. Laser-Assisted Simultaneous Transfer and Patterning of Vertically Aligned Carbon Nanotube Arrays on Polymer Substrates for Flexible Devices

    KAUST Repository

    In, Jung Bin

    2012-09-25

    We demonstrate a laser-assisted dry transfer technique for assembling patterns of vertically aligned carbon nanotube arrays on a flexible polymeric substrate. A laser beam is applied to the interface of a nanotube array and a polycarbonate sheet in contact with one another. The absorbed laser heat promotes nanotube adhesion to the polymer in the irradiated regions and enables selective pattern transfer. A combination of the thermal transfer mechanism with rapid direct writing capability of focused laser beam irradiation allows us to achieve simultaneous material transfer and direct micropatterning in a single processing step. Furthermore, we demonstrate that malleability of the nanotube arrays transferred onto a flexible substrate enables post-transfer tailoring of electric conductance by collapsing the aligned nanotubes in different directions. This work suggests that the laser-assisted transfer technique provides an efficient route to using vertically aligned nanotubes as conductive elements in flexible device applications. © 2012 American Chemical Society.

  4. Controllable deposition distance of aligned pattern via dual-nozzle near-field electrospinning

    Science.gov (United States)

    Wang, Zhifeng; Chen, Xindu; Zeng, Jun; Liang, Feng; Wu, Peixuan; Wang, Han

    2017-03-01

    For large area micro/nano pattern printing, multi-nozzle electrohydrodynamic (EHD) printing setup is an efficient method to boost productivity in near-field electrospinning (NFES) process. And controlling EHD multi-jet accurate deposition under the interaction of nozzles and other parameters are crucial concerns during the process. The influence and sensitivity of various parameters such as the needle length, needle spacing, electrode-to-collector distance, voltage etc. on the direct-write patterning performance was investigated by orthogonal experiments with dual-nozzle NFES setup, and then the deposition distance estimated based on a novel model was compared with measurement results and proven. More controllable deposition distance and much denser of aligned naofiber can be achieved by rotating the dual-nozzle setup. This study can be greatly contributed to estimate the deposition distance and helpful to guide the multi-nozzle NFES process to accurate direct-write pattern in manufacturing process in future.

  5. Evaluation of alignment marks using ASML ATHENA alignment system in 90nm BEOL process

    CERN Document Server

    Tan Chin Boon; Koh Hui Peng; Koo Chee, Kiong; Siew Yong Kong; Yeo Swee Hock

    2003-01-01

    As the critical dimension (CD) in integrated circuit (IC) device reduces, the total overlay budget needs to be more stringent. Typically, the allowable overlay error is 1/3 of the CD in the IC device. In this case, robustness of alignment mark is critical, as accurate signal is required by the scanner's alignment system to precisely align a layer of pattern to the previous layer. Alignment issue is more severe in back-end process partly due to the influenced of Chemical Mechanical Polishing (CMP), which contribute to the asymmetric or total destruction of the alignment marks. Alignment marks on the wafer can be placed along the scribe-line of the IC pattern. ASML scanner allows such type of wafer alignment using phase grating mark, known as Scribe-line Primary Mark (SPM) which can be fit into a standard 80um scribe-line. In this paper, we have studied the feasibility of introducing Narrow SPM (NSPM) to enable a smaller scribe-line. The width of NSPM has been shrunk down to 70% of the SPM and the length remain...

  6. Design Pattern Mining Using Distributed Learning Automata and DNA Sequence Alignment

    Science.gov (United States)

    Esmaeilpour, Mansour; Naderifar, Vahideh; Shukur, Zarina

    2014-01-01

    Context Over the last decade, design patterns have been used extensively to generate reusable solutions to frequently encountered problems in software engineering and object oriented programming. A design pattern is a repeatable software design solution that provides a template for solving various instances of a general problem. Objective This paper describes a new method for pattern mining, isolating design patterns and relationship between them; and a related tool, DLA-DNA for all implemented pattern and all projects used for evaluation. DLA-DNA achieves acceptable precision and recall instead of other evaluated tools based on distributed learning automata (DLA) and deoxyribonucleic acid (DNA) sequences alignment. Method The proposed method mines structural design patterns in the object oriented source code and extracts the strong and weak relationships between them, enabling analyzers and programmers to determine the dependency rate of each object, component, and other section of the code for parameter passing and modular programming. The proposed model can detect design patterns better that available other tools those are Pinot, PTIDEJ and DPJF; and the strengths of their relationships. Results The result demonstrate that whenever the source code is build standard and non-standard, based on the design patterns, then the result of the proposed method is near to DPJF and better that Pinot and PTIDEJ. The proposed model is tested on the several source codes and is compared with other related models and available tools those the results show the precision and recall of the proposed method, averagely 20% and 9.6% are more than Pinot, 27% and 31% are more than PTIDEJ and 3.3% and 2% are more than DPJF respectively. Conclusion The primary idea of the proposed method is organized in two following steps: the first step, elemental design patterns are identified, while at the second step, is composed to recognize actual design patterns. PMID:25243670

  7. Design pattern mining using distributed learning automata and DNA sequence alignment.

    Directory of Open Access Journals (Sweden)

    Mansour Esmaeilpour

    Full Text Available CONTEXT: Over the last decade, design patterns have been used extensively to generate reusable solutions to frequently encountered problems in software engineering and object oriented programming. A design pattern is a repeatable software design solution that provides a template for solving various instances of a general problem. OBJECTIVE: This paper describes a new method for pattern mining, isolating design patterns and relationship between them; and a related tool, DLA-DNA for all implemented pattern and all projects used for evaluation. DLA-DNA achieves acceptable precision and recall instead of other evaluated tools based on distributed learning automata (DLA and deoxyribonucleic acid (DNA sequences alignment. METHOD: The proposed method mines structural design patterns in the object oriented source code and extracts the strong and weak relationships between them, enabling analyzers and programmers to determine the dependency rate of each object, component, and other section of the code for parameter passing and modular programming. The proposed model can detect design patterns better that available other tools those are Pinot, PTIDEJ and DPJF; and the strengths of their relationships. RESULTS: The result demonstrate that whenever the source code is build standard and non-standard, based on the design patterns, then the result of the proposed method is near to DPJF and better that Pinot and PTIDEJ. The proposed model is tested on the several source codes and is compared with other related models and available tools those the results show the precision and recall of the proposed method, averagely 20% and 9.6% are more than Pinot, 27% and 31% are more than PTIDEJ and 3.3% and 2% are more than DPJF respectively. CONCLUSION: The primary idea of the proposed method is organized in two following steps: the first step, elemental design patterns are identified, while at the second step, is composed to recognize actual design patterns.

  8. Design pattern mining using distributed learning automata and DNA sequence alignment.

    Science.gov (United States)

    Esmaeilpour, Mansour; Naderifar, Vahideh; Shukur, Zarina

    2014-01-01

    Over the last decade, design patterns have been used extensively to generate reusable solutions to frequently encountered problems in software engineering and object oriented programming. A design pattern is a repeatable software design solution that provides a template for solving various instances of a general problem. This paper describes a new method for pattern mining, isolating design patterns and relationship between them; and a related tool, DLA-DNA for all implemented pattern and all projects used for evaluation. DLA-DNA achieves acceptable precision and recall instead of other evaluated tools based on distributed learning automata (DLA) and deoxyribonucleic acid (DNA) sequences alignment. The proposed method mines structural design patterns in the object oriented source code and extracts the strong and weak relationships between them, enabling analyzers and programmers to determine the dependency rate of each object, component, and other section of the code for parameter passing and modular programming. The proposed model can detect design patterns better that available other tools those are Pinot, PTIDEJ and DPJF; and the strengths of their relationships. The result demonstrate that whenever the source code is build standard and non-standard, based on the design patterns, then the result of the proposed method is near to DPJF and better that Pinot and PTIDEJ. The proposed model is tested on the several source codes and is compared with other related models and available tools those the results show the precision and recall of the proposed method, averagely 20% and 9.6% are more than Pinot, 27% and 31% are more than PTIDEJ and 3.3% and 2% are more than DPJF respectively. The primary idea of the proposed method is organized in two following steps: the first step, elemental design patterns are identified, while at the second step, is composed to recognize actual design patterns.

  9. Improving the quality factor of an RF spiral inductor with non-uniform metal width and non-uniform coil spacing

    International Nuclear Information System (INIS)

    Shen Pei; Zhang Wanrong; Huang Lu; Jin Dongyue; Xie Hongyun

    2011-01-01

    An improved inductor layout with non-uniform metal width and non-uniform spacing is proposed to increase the quality factor (Q factor). For this inductor layout, from outer coil to inner coil, the metal width is reduced by an arithmetic-progression step, while the metal spacing is increased by a geometric-progression step. An improved layout with variable width and changed spacing is of benefit to the Q factor of RF spiral inductor improvement (approximately 42.86%), mainly due to the suppression of eddy-current loss by weakening the current crowding effect in the center of the spiral inductor. In order to increase the Q factor further, for the novel inductor, a patterned ground shield is used with optimized layout together. The results indicate that, in the range of 0.5 to 16 GHz, the Q factor of the novel inductor is at an optimum, which improves by 67% more than conventional inductors with uniform geometry dimensions (equal width and equal spacing), is enhanced by nearly 23% more than a PGS inductor with uniform geometry dimensions, and improves by almost 20% more than an inductor with an improved layout. (semiconductor devices)

  10. Line roughness improvements on self-aligned quadruple patterning by wafer stress engineering

    Science.gov (United States)

    Liu, Eric; Ko, Akiteru; Biolsi, Peter; Chae, Soo Doo; Hsieh, Chia-Yun; Kagaya, Munehito; Lee, Choongman; Moriya, Tsuyoshi; Tsujikawa, Shimpei; Suzuki, Yusuke; Okubo, Kazuya; Imai, Kiyotaka

    2018-04-01

    In integrated circuit and memory devices, size shrinkage has been the most effective method to reduce production cost and enable the steady increment of the number of transistors per unit area over the past few decades. In order to reduce the die size and feature size, it is necessary to minimize pattern formation in the advance node development. In the node of sub-10nm, extreme ultra violet lithography (EUV) and multi-patterning solutions based on 193nm immersionlithography are the two most common options to achieve the size requirement. In such small features of line and space pattern, line width roughness (LWR) and line edge roughness (LER) contribute significant amount of process variation that impacts both physical and electrical performances. In this paper, we focus on optimizing the line roughness performance by using wafer stress engineering on 30nm pitch line and space pattern. This pattern is generated by a self-aligned quadruple patterning (SAQP) technique for the potential application of fin formation. Our investigation starts by comparing film materials and stress levels in various processing steps and material selection on SAQP integration scheme. From the cross-matrix comparison, we are able to determine the best stack of film selection and stress combination in order to achieve the lowest line roughness performance while obtaining pattern validity after fin etch. This stack is also used to study the step-by-step line roughness performance from SAQP to fin etch. Finally, we will show a successful patterning of 30nm pitch line and space pattern SAQP scheme with 1nm line roughness performance.

  11. Pattern analysis of aligned nanowires in a microchannel

    International Nuclear Information System (INIS)

    Jeon, Young Jin; Kang, Hyun Wook; Ko, Seung Hwan; Sung, Hyung Jin

    2013-01-01

    An image processing method for evaluating the quality of nanowire alignment in a microchannel is described. A solution containing nanowires flowing into a microchannel will tend to deposit the nanowires on the bottom surface of the channel via near-wall shear flows. The deposited nanowires generally form complex directional structures along the direction of flow, and the physical properties of these structures depend on the structural morphology, including the alignment quality. A quantitative analysis approach to characterizing the nanowire alignment is needed to estimate the useful features of the nanowire structures. This analysis consists of several image processing methods, including ridge detection, texton analysis and autocorrelation function (ACF) calculation. The ridge detection method improved the ACF by extracting nanowire frames 1–2 pixels in width. Dilation filters were introduced to permit a comparison of the ACF results calculated from different images, regardless of the nanowire orientation. An ACF based on the FFT was then calculated over a square interrogation window. The alignment angle probability distribution was obtained using texton analysis. Monte Carlo simulations of artificially generated images were carried out, and the new algorithm was applied to images collected using two types of microscopy. (paper)

  12. Alignment of human cardiomyocytes on laser patterned biphasic core/shell nanowire assemblies

    International Nuclear Information System (INIS)

    Kiefer, Karin; Haidar, Ayman; Abdul-Khaliq, Hashim; Lee, Juseok; Martinez Miró, Marina; Kaan Akkan, Cagri; Cenk Aktas, Oral; Veith, Michael

    2014-01-01

    The management of end stage heart failure patients is only possible by heart transplantation or by the implantation of artificial hearts as a bridge for later transplantation. However, these therapeutic strategies are limited by a lack of donor hearts and by the associated complications, such as coagulation and infection, due to the used artificial mechanical circulatory assist devices. Therefore, new strategies for myocardial regenerative approaches are under extensive research to produce contractile myocardial tissue in the future to replace non-contractile myocardial ischemic and scarred tissue. Different approaches, such as cell transplantation, have been studied intensively. Although successful approaches have been observed, there are still limitations to the application. It is envisaged that myocardial tissue engineering can be used to help replace infarcted non-contractile tissue. The developed tissue should later mimic the aligned fibrillar structure of the extracellular matrix and provide important guidance cues for the survival, function and the needed orientation of cardiomyocytes. Nanostructured surfaces have been tested to provide a guided direction that cells can follow. In the present study, the cellular adhesion/alignment of human cardiomyocytes and the biocompatibility have been investigated after cultivation on different laser-patterned nanowires compared with unmodified nanowires. As a result, the nanostructured surfaces possessed good biocompatibility before and after laser modification. The laser-induced scalability of the pattern enabled the growth and orientation of the adhered myocardial tissue. Such approaches may be used to modify the surface of potential scaffolds to develop myocardial contractile tissue in the future. (paper)

  13. Laser-Assisted Simultaneous Transfer and Patterning of Vertically Aligned Carbon Nanotube Arrays on Polymer Substrates for Flexible Devices

    KAUST Repository

    In, Jung Bin; Lee, Daeho; Fornasiero, Francesco; Noy, Aleksandr; Grigoropoulos, Costas P.

    2012-01-01

    We demonstrate a laser-assisted dry transfer technique for assembling patterns of vertically aligned carbon nanotube arrays on a flexible polymeric substrate. A laser beam is applied to the interface of a nanotube array and a polycarbonate sheet

  14. Nonunique and nonuniform mapping in few-body Coulomb-explosion imaging

    Science.gov (United States)

    Sayler, A. M.; Eckner, E.; McKenna, J.; Esry, B. D.; Carnes, K. D.; Ben-Itzhak, I.; Paulus, G. G.

    2018-03-01

    Much of our knowledge of molecular geometry and interaction dynamics comes from indirect measurements of the molecular fragments following breakup. This technique—Coulomb-explosion imaging (CEI), i.e., determining the initial molecular configuration of a system from the momenta of the resulting fragments using knowledge of the particle interactions—is one of the fundamental tools of molecular physics. Moreover, CEI has been a staple of molecular studies for decades. Here we show that one often cannot assign a unique initial configuration to the few-body breakup of a polyatomic molecule given the measurement of the resulting fragments' momenta. Specifically, multiple initial configurations can result in identical momenta for a molecule breaking into three or more parts. Further, the nonunique and nonuniform mapping from the initial configuration to the measured momenta also significantly complicates the determination of molecular alignment at the time of breakup.

  15. Compensation for nonuniform attenuation in SPECT brain imaging

    International Nuclear Information System (INIS)

    Glick, S.J.; King, M.A.; Pan, T.S.; Soares, E.J.

    1996-01-01

    Accurate compensation for photon attenuation is needed to perform quantitative brain single-photon-emission computed tomographic (SPECT) imaging. Bellini's attenuation-compensation method has been used with a nonuniform attenuation map to account for the nonuniform attenuation properties of the head. Simulation studies using a three-dimensional (3-D) digitized anthropomorphic brain phantom were conducted to compare quantitative accuracy of reconstructions obtained with the nonuniform Bellini method to that obtained with the Chang method and to iterative reconstruction using maximum-likelihood expectation maximization (ML-EM). Using the Chang method and assuming the head to be a uniform attenuator gave reconstructions with an average bias of approximately 6-8%, whereas using the Bellini or the iterative ML-EM method with a nonuniform attenuation map gave an average bias of approximately 1%. The computation time required to implement nonuniform attenuation compensation with the Bellini algorithm is approximately equivalent to the time required to perform one iteration of ML-EM. Thus, using the Bellini method with a nonuniform attenuation map provides accurate compensation for photon attenuation within the head, and the method can be implemented in computation times suitable for routine clinical use

  16. Non-uniform sampling of NMR relaxation data

    DEFF Research Database (Denmark)

    Schwarz-Linnet, Troels; Teilum, Kaare

    2016-01-01

    The use of non-uniform sampling of NMR spectra may give significant reductions in the data acquisition time. For quantitative experiments such as the measurement of spin relaxation rates, non-uniform sampling is however not widely used as inaccuracies in peak intensities may lead to errors...... in the extracted dynamic parameters. By systematic reducing the coverage of the Nyquist grid of (15)N Carr-Purcell-Meiboom-Gill (CPMG) relaxation dispersion datasets for four different proteins and performing a full data analysis of the resulting non-uniform sampled datasets, we have compared the performance...... of the multi-dimensional decomposition and iterative re-weighted least-squares algorithms in reconstructing spectra with accurate peak intensities. As long as a single fully sampled spectrum is included in a series of otherwise non-uniform sampled two-dimensional spectra, multi-dimensional decomposition...

  17. Thermal Performance for Wet Cooling Tower with Different Layout Patterns of Fillings under Typical Crosswind Conditions

    Directory of Open Access Journals (Sweden)

    Ming Gao

    2017-01-01

    Full Text Available A thermal-state model experimental study was performed in lab to investigate the thermal performance of a wet cooling tower with different kinds of filling layout patterns under windless and 0.4 m/s crosswind conditions. In this paper, the contrast analysis was focused on comparing a uniform layout pattern and one kind of optimal non-uniform layout pattern when the environmental crosswind speed is 0 m/s and 0.4 m/s. The experimental results proved that under windless conditions, the heat transfer coefficient and total heat rejection of circulating water for the optimal non-uniform layout pattern can enhance by approximately 40% and 28%, respectively, compared with the uniform layout pattern. It was also discovered that the optimal non-uniform pattern can dramatically relieve the influence of crosswind on the thermal performance of the tower when the crosswind speed is equal to 0.4 m/s. For the uniform layout pattern, the heat transfer coefficient under 0.4 m/s crosswind conditions decreased by 9.5% compared with the windless conditions, while that value lowered only by 2.0% for the optimal non-uniform layout pattern. It has been demonstrated that the optimal non-uniform layout pattern has the better thermal performance under 0.4 m/s crosswind condition.

  18. Properties of multilayer nonuniform holographic structures

    International Nuclear Information System (INIS)

    Pen, E F; Rodionov, Mikhail Yu

    2010-01-01

    Experimental results and analysis of properties of multilayer nonuniform holographic structures formed in photopolymer materials are presented. The theoretical hypotheses is proved that the characteristics of angular selectivity for the considered structures have a set of local maxima, whose number and width are determined by the thicknesses of intermediate layers and deep holograms and that the envelope of the maxima coincides with the selectivity contour of a single holographic array. It is also experimentally shown that hologram nonuniformities substantially distort shapes of selectivity characteristics: they become asymmetric, the local maxima differ in size and the depths of local minima reduce. The modelling results are made similar to experimental data by appropriately choosing the nonuniformity parameters. (imaging and image processing. holography)

  19. Biomechanical Alignment of Main Wear-Pattern on MOM Total Hip Replacement

    Directory of Open Access Journals (Sweden)

    Paul Burton

    2015-08-01

    Full Text Available In the majority of retrievals, femoral heads and cups are sent for analysis with no designation as to positioning in-vivo. In addition, when patients retain the femoral prosthesis, evidence of neck impingement damage is lost. In this case report we studied head and cup wear-patterns and stripe damage in a novel case that included a large diameter metal-on-metal THA that was retrieved with the head still fused to the stem. This provided anatomical positioning of head wear-pattern and stripe damage as represented by the orientation of the femoral stem in radiographic images. We investigated (1 size, shape and location of head and cup wear-patterns, (2 cup-to-stem impingement damage, and (3 head stripe-wear. The head wear-pattern was elliptical in shape, 40mm diameter with area covering 2200 sq.mm. Its hemispherical ratio was 56% with aspect ratio 1.2 and typical of large-diameter MOM retrievals. Wear-pattern extended from 12° above superior head-margin to approximately 40° inferior to polar axis. Centroidal vector in coronal plane was 13° posterior to polar axis and in transverse plane was 19° superior to polar axis. These vector data corresponded well with biomechanical predictions of resultant load axes in gait studies. Stripe damage was identified on the head, and the cup rim could thereby be aligned to verify neck impingement and also head subluxation mechanisms. Cup wear-pattern was not centrally contained, indicating this patient had experienced repetitive edge-wear during gait. Thinning of the cup rim by 350- 400μm indicated that posterior impingement with repetitive anterior subluxation of the head had created this edge-wear.

  20. Spatiotemporal alignment of in utero BOLD-MRI series.

    Science.gov (United States)

    Turk, Esra Abaci; Luo, Jie; Gagoski, Borjan; Pascau, Javier; Bibbo, Carolina; Robinson, Julian N; Grant, P Ellen; Adalsteinsson, Elfar; Golland, Polina; Malpica, Norberto

    2017-08-01

    To present a method for spatiotemporal alignment of in-utero magnetic resonance imaging (MRI) time series acquired during maternal hyperoxia for enabling improved quantitative tracking of blood oxygen level-dependent (BOLD) signal changes that characterize oxygen transport through the placenta to fetal organs. The proposed pipeline for spatiotemporal alignment of images acquired with a single-shot gradient echo echo-planar imaging includes 1) signal nonuniformity correction, 2) intravolume motion correction based on nonrigid registration, 3) correction of motion and nonrigid deformations across volumes, and 4) detection of the outlier volumes to be discarded from subsequent analysis. BOLD MRI time series collected from 10 pregnant women during 3T scans were analyzed using this pipeline. To assess pipeline performance, signal fluctuations between consecutive timepoints were examined. In addition, volume overlap and distance between manual region of interest (ROI) delineations in a subset of frames and the delineations obtained through propagation of the ROIs from the reference frame were used to quantify alignment accuracy. A previously demonstrated rigid registration approach was used for comparison. The proposed pipeline improved anatomical alignment of placenta and fetal organs over the state-of-the-art rigid motion correction methods. In particular, unexpected temporal signal fluctuations during the first normoxia period were significantly decreased (P quantitative studies of placental function by improving spatiotemporal alignment across placenta and fetal organs. 1 Technical Efficacy: Stage 1 J. MAGN. RESON. IMAGING 2017;46:403-412. © 2017 International Society for Magnetic Resonance in Medicine.

  1. Optical security devices using nonuniform schlieren texture of UV-curable nematic liquid crystal.

    Science.gov (United States)

    Nakayama, Keizo; Ohtsubo, Junji

    2016-02-10

    We proposed and quantitatively evaluated an optical security device that provides nonuniform or random patterns of schlieren texture in nematic liquid crystal as unique identification information with a design by employing computer image processing and normalized cross correlation. Using the same photomask as the first author's university logo, the written patterns, which were composed of polymerized isotropic areas and polymerized nematic areas, were stable among different cells. Judging from the maximum correlation coefficient of 0.09, the patterns of the schlieren texture were unique in different cells. These results indicate that photocurable nematic liquid crystal materials have the potential to be applied to security devices for anticounterfeiting measures.

  2. Wafer-Level Patterned and Aligned Polymer Nanowire/Micro- and Nanotube Arrays on any Substrate

    KAUST Repository

    Morber, Jenny Ruth

    2009-05-25

    A study was conducted to fabricate wafer-level patterned and aligned polymer nanowire (PNW), micro- and nanotube arrays (PNT), which were created by exposing the polymer material to plasma etching. The approach for producing wafer-level aligned PNWs involved a one-step inductively coupled plasma (ICP) reactive ion etching process. The polymer nanowire array was fabricated in an ICP reactive ion milling chamber with a pressure of 10mTorr. Argon (Ar), O 2, and CF4 gases were released into the chamber as etchants at flow rates of 15 sccm, 10 sccm, and 40 sccm. Inert gasses, such as Ar-form positive ions were incorporated to serve as a physical component to assist in the material degradation process. One power source (400 W) was used to generate dense plasma from the input gases, while another power source applied a voltage of approximately 600V to accelerate the plasma toward the substrate.

  3. Physical Limitations To Nonuniformity Correction In IR Focal Plane Arrays

    Science.gov (United States)

    Scribner, D. A.; Kruer, M. R.; Gridley, J. C.; Sarkady, K.

    1988-05-01

    Simple nonuniformity correction algorithms currently in use can be severely limited by nonlinear response characteristics of the individual pixels in an IR focal plane array. Although more complicated multi-point algorithms improve the correction process they too can be limited by nonlinearities. Furthermore, analysis of single pixel noise power spectrums usually show some level of 1 /f noise. This in turn causes pixel outputs to drift independent of each other thus causing the spatial noise (often called fixed pattern noise) of the array to increase as a function of time since the last calibration. Measurements are presented for two arrays (a HgCdTe hybrid and a Pt:Si CCD) describing pixel nonlinearities, 1/f noise, and residual spatial noise (after nonuniforming correction). Of particular emphasis is spatial noise as a function of the lapsed time since the last calibration and the calibration process selected. The resulting spatial noise is examined in terms of its effect on the NEAT performance of each array tested and comparisons are made. Finally, a discussion of implications for array developers is given.

  4. A stability criterion for HNFDE with non-uniform delays

    International Nuclear Information System (INIS)

    Liu Xingwen; Zhong Shouming; Zhang Fengli

    2005-01-01

    Stability of functional differential equations (FDE) is an increasingly important problem in both science and engineering. Delays, whether uniform or non-uniform, play an important role in the dynamics of a system. Since non-uniform delay is more general and less focused than uniform delay, this paper concentrates on the stability of high-order neutral functional differential equations (HNFDE) with non-uniform delay, and proposes a sufficient condition for it. This result may be widely helpful, thanks to the frequent emergence of a HNFDE with non-uniform delay in various fields. Its effectiveness is illustrated by some examples

  5. Quasiparticles in non-uniformly magnetized plasma

    International Nuclear Information System (INIS)

    Sosenko, P.P.

    1994-01-01

    A quasiparticle concept is generalized for the case of non-uniformly magnetized plasma. Exact and reduced continuity equations for the microscopic density in the quasiparticle phase space are derived, and the nature of quasiparticles is analyzed. The theory is developed for the general case of relativistic particles in electromagnetic fields, besides non-uniform but stationary magnetic fields. Effects of non-stationary magnetic fields are briefly investigated also. 26 refs

  6. Statistical evaluation of unobserved nonuniform corrosion in A216 steel

    International Nuclear Information System (INIS)

    Pulsipher, B.A.

    1988-07-01

    Tests designed to promote nonuniform corrosion have been conducted at PNL on A216 steel. In all of the tests performed to date, there have been no manifestations of significant nonuniform corrosion. Although this may suggest that nonuniform corrosion in A216 steel may not be a significant problem in the nuclear waste repository, a question arises as to whether enough tests have been conducted for a sufficient length of time to rule out nonuniform corrosion of A216 steel. In this report, a method for determining the required number of tests is examined for two of the mechanisms of nonuniform corrosion: pitting and crevice corrosion

  7. Test stand for non-uniformity correction of microbolometer focal plane arrays used in thermal cameras

    Science.gov (United States)

    Krupiński, Michał; Bareła, Jaroslaw; Firmanty, Krzysztof; Kastek, Mariusz

    2013-10-01

    Uneven response of particular detectors (pixels) to the same incident power of infrared radiation is an inherent feature of microbolometer focal plane arrays. As a result an image degradation occurs, known as Fixed Pattern Noise (FPN), which distorts the thermal representation of an observed scene and impairs the parameters of a thermal camera. In order to compensate such non-uniformity, several NUC correction methods are applied in digital data processing modules implemented in thermal cameras. Coefficients required to perform the non-uniformity correction procedure (NUC coefficients) are determined by calibrating the camera against uniform radiation sources (blackbodies). Non-uniformity correction is performed in a digital processing unit in order to remove FPN pattern in the registered thermal images. Relevant correction coefficients are calculated on the basis of recorded detector responses to several values of radiant flux emitted from reference IR radiation sources (blackbodies). The measurement of correction coefficients requires specialized setup, in which uniform, extended radiation sources with high temperature stability are one of key elements. Measurement stand for NUC correction developed in Institute of Optoelectronics, MUT, comprises two integrated extended blackbodies with the following specifications: area 200×200 mm, stabilized absolute temperature range +15 °C÷100 °C, and uniformity of temperature distribution across entire surface +/-0.014 °C. Test stand, method used for the measurement of NUC coefficients and the results obtained during the measurements conducted on a prototype thermal camera will be presented in the paper.

  8. Nonuniformity mitigation of beam illumination in heavy ion inertial fusion

    International Nuclear Information System (INIS)

    Kawata, S; Noguchi, K; Suzuki, T; Kurosaki, T; Barada, D; Ogoyski, A I; Zhang, W; Xie, J; Zhang, H; Dai, D

    2014-01-01

    In inertial fusion, a target DT fuel should be compressed to typically 1000 times the solid density. The target implosion nonuniformity is introduced by a driver beam’s illumination nonuniformity, for example. The target implosion should be robust against the implosion nonuniformities. In this paper, the requirement for implosion uniformity is first discussed. The implosion non-uniformity should be less than a few percent. The implosion dynamics is also briefly reviewed in heavy ion inertial fusion (HIF). Heavy ions deposit their energy inside the target energy absorber, and the energy deposition layer is rather thick, depending on the ion particle energy. Then nonuniformity mitigation mechanisms of the heavy ion beam (HIB) illumination in HIF are discussed. A density valley appears in the energy absorber, and the large-scale density valley also works as a radiation energy confinement layer, which contributes to a radiation energy smoothing. In HIF, wobbling heavy ion beam illumination was also introduced to realize a uniform implosion. The wobbling HIB axis oscillation is precisely controlled. In the wobbling HIBs’ illumination, the illumination nonuniformity oscillates in time and space on an HIF target. The oscillating-HIB energy deposition may contribute to the reduction of the HIBs’ illumination nonuniformity by its smoothing effect on the HIB illumination nonuniformity and also by a growth mitigation effect on the Rayleigh–Taylor instability. (invited comment)

  9. JDet: interactive calculation and visualization of function-related conservation patterns in multiple sequence alignments and structures.

    Science.gov (United States)

    Muth, Thilo; García-Martín, Juan A; Rausell, Antonio; Juan, David; Valencia, Alfonso; Pazos, Florencio

    2012-02-15

    We have implemented in a single package all the features required for extracting, visualizing and manipulating fully conserved positions as well as those with a family-dependent conservation pattern in multiple sequence alignments. The program allows, among other things, to run different methods for extracting these positions, combine the results and visualize them in protein 3D structures and sequence spaces. JDet is a multiplatform application written in Java. It is freely available, including the source code, at http://csbg.cnb.csic.es/JDet. The package includes two of our recently developed programs for detecting functional positions in protein alignments (Xdet and S3Det), and support for other methods can be added as plug-ins. A help file and a guided tutorial for JDet are also available.

  10. A non-uniform expansion mechanical safety model of the stent.

    Science.gov (United States)

    Yang, J; Huang, N; Du, Q

    2009-01-01

    Stents have a serial unstable structure that readily leads to non-uniform expansion. Non-uniform expansion in turn creates a stent safety problem. We explain how a stent may be simplified to a serial unstable structure, and present a method to calculate the non-uniform expansion of the stent on the basis of the serial unstable structure. We propose a safety criterion based on the expansion displacement instead of the strain, and explain that the parameter Rd, the ratio of the maximum displacement of the elements to normal displacement, is meaningful to assess the safety level of the stent. We also examine how laser cutting influences non-uniform expansion. The examples illustrate how to calculate the parameter Rd to assess non-uniform expansion of the stent, and demonstrate how the laser cutting offset and strengthening coefficient of the material influence the stent expansion behaviour. The methods are valuable for assessing stent safety due to non-uniform expansion.

  11. Spontaneous magnetic alignment by yearling snapping turtles: rapid association of radio frequency dependent pattern of magnetic input with novel surroundings.

    Science.gov (United States)

    Landler, Lukas; Painter, Michael S; Youmans, Paul W; Hopkins, William A; Phillips, John B

    2015-01-01

    We investigated spontaneous magnetic alignment (SMA) by juvenile snapping turtles using exposure to low-level radio frequency (RF) fields at the Larmor frequency to help characterize the underlying sensory mechanism. Turtles, first introduced to the testing environment without the presence of RF aligned consistently towards magnetic north when subsequent magnetic testing conditions were also free of RF ('RF off → RF off'), but were disoriented when subsequently exposed to RF ('RF off → RF on'). In contrast, animals initially introduced to the testing environment with RF present were disoriented when tested without RF ('RF on → RF off'), but aligned towards magnetic south when tested with RF ('RF on → RF on'). Sensitivity of the SMA response of yearling turtles to RF is consistent with the involvement of a radical pair mechanism. Furthermore, the effect of RF appears to result from a change in the pattern of magnetic input, rather than elimination of magnetic input altogether, as proposed to explain similar effects in other systems/organisms. The findings show that turtles first exposed to a novel environment form a lasting association between the pattern of magnetic input and their surroundings. However, under natural conditions turtles would never experience a change in the pattern of magnetic input. Therefore, if turtles form a similar association of magnetic cues with the surroundings each time they encounter unfamiliar habitat, as seems likely, the same pattern of magnetic input would be associated with multiple sites/localities. This would be expected from a sensory input that functions as a global reference frame, helping to place multiple locales (i.e., multiple local landmark arrays) into register to form a global map of familiar space.

  12. Precise rotational alignment of x-ray transmission diffraction gratings

    International Nuclear Information System (INIS)

    Hill, S.L.

    1988-01-01

    Gold transmission diffraction gratings used for x-ray spectroscopy must sometimes be rotationally aligned to the axis of a diagnostic instrument to within sub-milliradian accuracy. We have fabricated transmission diffraction gratings with high line-densities (grating period of 200 and 300 nm) using uv holographic and x-ray lithography. Since the submicron features of the gratings are not optically visible, precision alignment is time consuming and difficult to verify in situ. We have developed a technique to write an optically visible alignment pattern onto these gratings using a scanning electron microscope (SEM). At high magnification (15000 X) several submicron lines of the grating are observable in the SEM, making it possible to write an alignment pattern parallel to the grating lines in an electron-beam-sensitive coating that overlays the grating. We create an alignment pattern by following a 1-cm-long grating line using the SEM's joystick-controlled translation stage. By following the same grating line we are assured the traveled direction of the SEM electron beam is parallel to the grating to better than 10 μradian. The electron-beam-exposed line-width can be large (5 to 15 μm wide) depending on the SEM magnification, and is therefore optically visible. The exposed pattern is eventually made a permanent feature of the grating by ion beam etching or gold electroplating. The pattern can be used to accurately align the grating to the axis of a diagnostic instrument. More importantly, the alignment of the grating can be quickly verified in situ

  13. Alternative methods for evaluation of non-uniformity in nuclear medicine images

    International Nuclear Information System (INIS)

    Rasaneh, S.; Rajabi, H.; Hajizadeh, E.

    2005-01-01

    Non-uniformity test is the most essential in daily quality control procedures of nuclear medicine equipment's. However, the calculation of non-uniformity is hindered due to high level of noise in nuclear medicine data. Non-uniformity may be considered as a type of systematic error while noise is certainly a random error. The present methods of uniformity evaluation are not able to distinguish between systematic and random error and therefore produce incorrect results when noise is significant. In the present study, two hypothetical methods have been tested for evaluation of non-uniformity in nuclear medicine images. Materials and Methods: Using the Monte Carlo method, uniform and non-uniform flood images of different matrix sizes and different counts were generated. The uniformity of the images was calculated using the conventional method and proposed methods. The results were compared with the known non-uniformity data of simulated images. Results: It was observed that the value of integral uniformity never went below the recommended values except in small matrix size of high counts (more than 80 millions counts). The differential uniformity was quite insensitive to the degree of non-uniformity in large matrix size. Matrix size of 64*64 was only found to be suitable for the calculation of differential uniformity. It was observed that in uniform images, a small amount of non-uniformity changes the p-value of Kolmogorov-Smirnov test and noise amplitude of fast fourier transformation test significantly while the conventional methods failed to detect the nonuniformity. Conclusion: The conventional methods do not distinguish noise, which is always present in the data and occasional non-uniformity at low count density. In a uniform intact flood image, the difference between maximum and minimum pixel count (the value of integral uniformity) is much more than the recommended values for non-uniformity. After filtration of image, this difference decreases, but remains high

  14. Non-Uniformity Correction Using Nonlinear Characteristic Performance Curves for Calibration

    Science.gov (United States)

    Lovejoy, McKenna Roberts

    Infrared imaging is an expansive field with many applications. Advances in infrared technology have lead to a greater demand from both commercial and military sectors. However, a known problem with infrared imaging is its non-uniformity. This non-uniformity stems from the fact that each pixel in an infrared focal plane array has its own photoresponse. Many factors such as exposure time, temperature, and amplifier choice affect how the pixels respond to incoming illumination and thus impact image uniformity. To improve performance non-uniformity correction (NUC) techniques are applied. Standard calibration based techniques commonly use a linear model to approximate the nonlinear response. This often leaves unacceptable levels of residual non-uniformity. Calibration techniques often have to be repeated during use to continually correct the image. In this dissertation alternates to linear NUC algorithms are investigated. The goal of this dissertation is to determine and compare nonlinear non-uniformity correction algorithms. Ideally the results will provide better NUC performance resulting in less residual non-uniformity as well as reduce the need for recalibration. This dissertation will consider new approaches to nonlinear NUC such as higher order polynomials and exponentials. More specifically, a new gain equalization algorithm has been developed. The various nonlinear non-uniformity correction algorithms will be compared with common linear non-uniformity correction algorithms. Performance will be compared based on RMS errors, residual non-uniformity, and the impact quantization has on correction. Performance will be improved by identifying and replacing bad pixels prior to correction. Two bad pixel identification and replacement techniques will be investigated and compared. Performance will be presented in the form of simulation results as well as before and after images taken with short wave infrared cameras. The initial results show, using a third order

  15. Alignment performance monitoring for ASML systems

    Science.gov (United States)

    Chung, Woong-Jae; Temchenko, Vlad; Hauck, Tarja; Schmidt, Sebastian

    2006-03-01

    In today's semiconductor industry downscaling of the IC design puts a stringent requirement on pattern overlay control. Tighter overlay requirements lead to exceedingly higher rework rates, meaning additional costs to manufacturing. Better alignment control became a target of engineering efforts to decrease rework rate for high-end technologies. Overlay performance is influenced by known parameters such as "Shift, Scaling, Rotation, etc", and unknown parameters defined as "Process Induced Variation", which are difficult to control by means of a process automation system. In reality, this process-induced variation leads to a strong wafer to wafer, or lot to lot variation, which are not easy to detect in the mass-production environment which uses sampling overlay measurements for only several wafers in a lot. An engineering task of finding and correcting a root cause for Process Induced Variations of overlay performance will be greatly simplified if the unknown parameters could be tracked for each wafer. This paper introduces an alignment performance monitoring method based on analysis of automatically generated "AWE" files for ASML scanner systems. Because "AWE" files include alignment results for each aligned wafer, it is possible to use them for monitoring, controlling and correcting the causes of "process induced" overlay performance without requiring extra measurement time. Since "AWE" files include alignment information for different alignment marks, it is also possible to select and optimize the best alignment recipe for each alignment strategy. Several case studies provided in our paper will demonstrate how AWE file analysis can be used to assist engineer in interpreting pattern alignment data. Since implementing our alignment data monitoring method, we were able to achieve significant improvement of alignment and overlay performance without additional overlay measurement time. We also noticed that the rework rate coming from alignment went down and

  16. Angle alignment evokes perceived depth and illusory surfaces.

    Science.gov (United States)

    Shapley, Robert; Maertens, Marianne

    2008-01-01

    There is a distinct visual process that triggers the perception of illusory surfaces and contours along the intersections of aligned, zigzag line patterns. Such illusory contours and surfaces are qualitatively different from illusory contours of the Kanizsa type. The illusory contours and surfaces in this case are not the product of occlusion and do not imply occlusion of one surface by another. Rather, the aligned angles in the patterns are combined by the visual system into the perception of a fold or a 3-D corner, as of stairs on a staircase or a wall ending on a floor. The depth impression is ambiguous and reversible like the Necker cube. Such patterns were used by American Indian artists of the Akimel O'odham (Pima) tribe in basketry, and also by modern European and American artists like Josef Albers, Bridget Riley, Victor Vasarely, and Frank Stella. Our research aims to find out what manipulations of the visual image affect perceived depth in such patterns in order to learn about the perceptual mechanisms. Using paired comparisons, we find that human observers perceive depth in such patterns if, and only if, lines in adjacent regions of the patterns join to form angles, and also if, and only if, the angles are aligned precisely to be consistent with a fold or 3-D corner. The amount of perceived depth is graded, depending on the steepness and the density of angles in the aligned-angle pattern. The required precision of the alignment implies that early retinotopic visual cortical areas may be involved in this perceptual behavior, but the linkage of form with perceived depth suggests involvement of higher cortical areas as well.

  17. Detecting oscillatory patterns and time lags from proxy records with non-uniform sampling: Some pitfalls and possible solutions

    Science.gov (United States)

    Donner, Reik

    2013-04-01

    Time series analysis offers a rich toolbox for deciphering information from high-resolution geological and geomorphological archives and linking the thus obtained results to distinct climate and environmental processes. Specifically, on various time-scales from inter-annual to multi-millenial, underlying driving forces exhibit more or less periodic oscillations, the detection of which in proxy records often allows linking them to specific mechanisms by which the corresponding drivers may have affected the archive under study. A persistent problem in geomorphology is that available records do not present a clear signal of the variability of environmental conditions, but exhibit considerable uncertainties of both the measured proxy variables and the associated age model. Particularly, time-scale uncertainty as well as the heterogeneity of sampling in the time domain are source of severe conceptual problems that may lead to false conclusions about the presence or absence of oscillatory patterns and their mutual phasing in different archives. In my presentation, I will discuss how one can cope with non-uniformly sampled proxy records to detect and quantify oscillatory patterns in one or more data sets. For this purpose, correlation analysis is reformulated using kernel estimates which are found superior to classical estimators based on interpolation or Fourier transform techniques. In order to characterize non-stationary or noisy periodicities and their relative phasing between different records, an extension of continuous wavelet transform is utilized. The performance of both methods is illustrated for different case studies. An extension to explicitly considering time-scale uncertainties by means of Bayesian techniques is briefly outlined.

  18. Subrandom methods for multidimensional nonuniform sampling.

    Science.gov (United States)

    Worley, Bradley

    2016-08-01

    Methods of nonuniform sampling that utilize pseudorandom number sequences to select points from a weighted Nyquist grid are commonplace in biomolecular NMR studies, due to the beneficial incoherence introduced by pseudorandom sampling. However, these methods require the specification of a non-arbitrary seed number in order to initialize a pseudorandom number generator. Because the performance of pseudorandom sampling schedules can substantially vary based on seed number, this can complicate the task of routine data collection. Approaches such as jittered sampling and stochastic gap sampling are effective at reducing random seed dependence of nonuniform sampling schedules, but still require the specification of a seed number. This work formalizes the use of subrandom number sequences in nonuniform sampling as a means of seed-independent sampling, and compares the performance of three subrandom methods to their pseudorandom counterparts using commonly applied schedule performance metrics. Reconstruction results using experimental datasets are also provided to validate claims made using these performance metrics. Copyright © 2016 Elsevier Inc. All rights reserved.

  19. Non-uniformly sampled grids in double pole coordinate system for freeform reflector construction

    Science.gov (United States)

    Ma, Donglin; Pacheco, Shaun; Feng, Zexin; Liang, Rongguang

    2015-08-01

    We propose a new method to design freeform reflectors by nonuniformly sampling the source intensity distribution in double pole coordinate system. In double pole coordinate system, there is no pole for the whole hemisphere because both poles of the spherical coordinate system are moved to southernmost point of the sphere and overlapped together. With symmetric definition of both angular coordinates in the modified double pole coordinate system, a better match between the source intensity distribution and target irradiance distribution can be achieved for reflectors with large acceptance solid angle, leading to higher light efficiency and better uniformity on the target surface. With non-uniform sampling of the source intensity, we can design circular freeform reflector to obtain uniform rectangular illumination pattern. Aided by the feedback optimization, the freeform reflector can achieve the collection efficiency for ideal point source over 0.7 and relative standard deviation (RSD) less than 0.1.

  20. Alignment of breast cancer screening guidelines, accountability metrics, and practice patterns.

    Science.gov (United States)

    Onega, Tracy; Haas, Jennifer S; Bitton, Asaf; Brackett, Charles; Weiss, Julie; Goodrich, Martha; Harris, Kimberly; Pyle, Steve; Tosteson, Anna N A

    2017-01-01

    Breast cancer screening guidelines and metrics are inconsistent with each other and may differ from breast screening practice patterns in primary care. This study measured breast cancer screening practice patterns in relation to common evidence-based guidelines and accountability metrics. Cohort study using primary data collected from a regional breast cancer screening research network between 2011 and 2014. Using information on women aged 30 to 89 years within 21 primary care practices of 2 large integrated health systems in New England, we measured the proportion of women screened overall and by age using 2 screening definition categories: any mammogram and screening mammogram. Of the 81,352 women in our cohort, 54,903 (67.5%) had at least 1 mammogram during the time period, 48,314 (59.4%) had a screening mammogram. Women aged 50 to 69 years were the highest proportion screened (82.4% any mammogram, 75% screening indication); 72.6% of women at age 40 had a screening mammogram with a median of 70% (range = 54.3%-84.8%) among the practices. Of women aged at least 75 years, 63.3% had a screening mammogram, with the median of 63.9% (range = 37.2%-78.3%) among the practices. Of women who had 2 or more mammograms, 79.5% were screened annually. Primary care practice patterns for breast cancer screening are not well aligned with some evidence-based guidelines and accountability metrics. Metrics and incentives should be designed with more uniformity and should also include shared decision making when the evidence does not clearly support one single conclusion.

  1. Relation between film character and wafer alignment: critical alignment issues on HV device for VLSI manufacturing

    Science.gov (United States)

    Lo, Yi-Chuan; Lee, Chih-Hsiung; Lin, Hsun-Peng; Peng, Chiou-Shian

    1998-06-01

    Several continuous splits for wafer alignment target topography conditions to improve epitaxy film alignment were applied. The alignment evaluation among former layer pad oxide thickness (250 angstrom - 500 angstrom), drive oxide thickness (6000 angstrom - 10000 angstrom), nitride film thickness (600 angstrom - 1500 angstrom), initial oxide etch (fully wet etch, fully dry etch and dry plus wet etch) will be split to this experiment. Also various epitaxy deposition recipe such as: epitaxy source (SiHCl2 or SiCHCl3) and growth rate (1.3 micrometer/min approximately 2.0 micrometer/min) will be used to optimize the process window for alignment issue. All the reflectance signal and cross section photography of alignment target during NIKON stepper alignment process will be examined. Experimental results show epitaxy recipe plays an important role to wafer alignment. Low growth rate with good performance conformity epitaxy lead to alignment target avoid washout, pattern shift and distortion. All the results (signal monitor and film character) combined with NIKON's stepper standard laser scanning alignment system will be discussed in this paper.

  2. Automatic target alignment of the Helios laser system

    International Nuclear Information System (INIS)

    Liberman, I.; Viswanathan, V.K.; Klein, M.; Seery, B.D.

    1980-01-01

    An automatic target-alignment technique for the Helios laser facility is reported and verified experimentally. The desired alignment condition is completely described by an autocollimation test. A computer program examines the autocollimated return pattern from the surrogate target and correctly describes any changes required in mirror orientation to yield optimum targe alignment with either aberrated or misaligned beams. Automated on-line target alignment is thus shown to be feasible

  3. Centrifugal pumping during Czochralski silicon growth with a strong, non-uniform, axisymmetric magnetic field

    Science.gov (United States)

    Khine, Y. Y.; Walker, J. S.

    1996-08-01

    Centrifugal pumping flows are produced in the melt by the rotations of crystal and crucible during the Czochralski growth of silicon crystals. This paper treats the centrifugal pumping effects with a steady, strong, non-uniform axisymmetric magnetic field. We consider a family of magnetic fields ranging from a uniform axial field to a "cusp" field, which has a purely radial field at the crystal-melt interface and free surface. We present the numerical solutions for the centrifugal pumping flows as the magnetic field is changed continuously from a uniform axial field to a cusp one, and for arbitrary Hartmann number. Since the perfect alignment between the local magnetic field vector and the crystal-melt interface or free surface is not likely, we also investigate the effects of a slight misalignment.

  4. Aligning protein sequence and analysing substitution pattern using ...

    Indian Academy of Sciences (India)

    Prakash

    Aligning protein sequences using a score matrix has became a routine but valuable method in modern biological ..... the amino acids according to their substitution behaviour ...... which may cause great change (e.g. prolonging the helix) in.

  5. Patterned Well-Aligned ZnO Nanorods Assisted with Polystyrene Monolayer by Oxygen Plasma Treatment

    Directory of Open Access Journals (Sweden)

    Hyun Ji Choi

    2016-08-01

    Full Text Available Zinc oxide is known as a promising material for sensing devices due to its piezoelectric properties. In particular, the alignment of ZnO nanostructures into ordered nanoarrays is expected to improve the device sensitivity due to the large surface area which can be utilized to capture significant quantities of gas particles. However, ZnO nanorods are difficult to grow on the quartz substrate with well-ordered shape. So, we investigated nanostructures by adjusting the interval distance of the arranged ZnO nanorods using polystyrene (PS spheres of various sizes (800 nm, 1300 nm and 1600 nm. In addition, oxygen plasma treatment was used to specify the nucleation site of round, patterned ZnO nanorod growth. Therefore, ZnO nanorods were grown on a quartz substrate with a patterned polystyrene monolayer by the hydrothermal method after oxygen plasma treatment. The obtained ZnO nanostructures were characterized by X-ray diffraction (XRD and field-emission scanning electron microscope (FE-SEM.

  6. High harmonic terahertz confocal gyrotron with nonuniform electron beam

    Energy Technology Data Exchange (ETDEWEB)

    Fu, Wenjie; Guan, Xiaotong; Yan, Yang [THz Research Center, School of Physical Electronics, University of Electronic Science and Technology of China, Chengdu 610054 (China)

    2016-01-15

    The harmonic confocal gyrotron with nonuniform electron beam is proposed in this paper in order to develop compact and high power terahertz radiation source. A 0.56 THz third harmonic confocal gyrotron with a dual arc section nonuniform electron beam has been designed and investigated. The studies show that confocal cavity has extremely low mode density, and has great advantage to operate at high harmonic. Nonuniform electron beam is an approach to improve output power and interaction efficiency of confocal gyrotron. A dual arc beam magnetron injection gun for designed confocal gyrotron has been developed and presented in this paper.

  7. Micromagnetics of thermally activated switching in nonuniformly magnetized nanodots

    International Nuclear Information System (INIS)

    Torres, L.; Lopez-Diaz, L.; Moro, E.; Francisco, C. de; Alejos, O.

    2001-01-01

    Patterned magnetic elements are being proposed as media for the future ultrahigh density storage systems. The equilibrium states of different patterned magnetic dots at zero temperature have been studied in numerous micromagnetic works while in the last year some studies have begun to include the effect of temperature in the computations. In this research a stochastic dynamic micromagnetic study is carried out for rectangular magnetic dots with size 10 by 3.1 times the exchange length, patterned in a film with a thickness of 5 times the exchange length. Two kinds of nonuniform magnetized nanodots are studied in detail: those in which the state prior to the switching follows the shape of a 'C' and those following an 'S'. In both cases a field near to the zero-temperature switching field is applied and then the thermally activated switching is observed. The dependence of the switching time on temperature is analyzed. It is observed how for the 'C' configuration an Arrhenius-like behavior is obtained in a large temperature window while this is not the case for the 'S' configuration. The micromagnetic structure of the switching thermally activated modes leading to these behaviors is also studied

  8. Nonuniformities in organic liquid ionization calorimeters

    International Nuclear Information System (INIS)

    Wenzel, W.A.

    1989-06-01

    Hermeticity and uniformity in SSC calorimeter designs are compromised by structure and modularity. Some of the consequences of the cryogenic needs of liquid argon calorimetry are relatively well known. If the active medium is an organic liquid (TMP, TMS, etc.), a large number of independent liquid volumes is needed for safety and for rapid liquid exchange to eliminate local contamination. Modular construction ordinarily simplifies fabrication, assembly, handling and preliminary testing at the price of additional walls, other dead regions and many nonuniformities. Here we examine ways of minimizing the impact of some generic nonuniformities on the quality of calorimeter performance. 6 refs., 7 figs

  9. Non-uniformity Correction of Infrared Images by Midway Equalization

    Directory of Open Access Journals (Sweden)

    Yohann Tendero

    2012-07-01

    Full Text Available The non-uniformity is a time-dependent noise caused by the lack of sensor equalization. We present here the detailed algorithm and on line demo of the non-uniformity correction method by midway infrared equalization. This method was designed to suit infrared images. Nevertheless, it can be applied to images produced for example by scanners, or by push-broom satellites. The obtained single image method works on static images, is fully automatic, having no user parameter, and requires no registration. It needs no camera motion compensation, no closed aperture sensor equalization and is able to correct for a fully non-linear non-uniformity.

  10. Capillary Self-Alignment of Microchips on Soft Substrates

    Directory of Open Access Journals (Sweden)

    Bo Chang

    2016-03-01

    Full Text Available Soft micro devices and stretchable electronics have attracted great interest for their potential applications in sensory skins and wearable bio-integrated devices. One of the most important steps in building printed circuits is the alignment of assembled micro objects. Previously, the capillary self-alignment of microchips driven by surface tension effects has been shown to be able to achieve high-throughput and high-precision in the integration of micro parts on rigid hydrophilic/superhydrophobic patterned surfaces. In this paper, the self-alignment of microchips on a patterned soft and stretchable substrate, which consists of hydrophilic pads surrounded by a superhydrophobic polydimethylsiloxane (PDMS background, is demonstrated for the first time. A simple process has been developed for making superhydrophobic soft surface by replicating nanostructures of black silicon onto a PDMS surface. Different kinds of PDMS have been investigated, and the parameters for fabricating superhydrophobic PDMS have been optimized. A self-alignment strategy has been proposed that can result in reliable self-alignment on a soft PDMS substrate. Our results show that capillary self-alignment has great potential for building soft printed circuits.

  11. Temporal high-pass non-uniformity correction algorithm based on grayscale mapping and hardware implementation

    Science.gov (United States)

    Jin, Minglei; Jin, Weiqi; Li, Yiyang; Li, Shuo

    2015-08-01

    In this paper, we propose a novel scene-based non-uniformity correction algorithm for infrared image processing-temporal high-pass non-uniformity correction algorithm based on grayscale mapping (THP and GM). The main sources of non-uniformity are: (1) detector fabrication inaccuracies; (2) non-linearity and variations in the read-out electronics and (3) optical path effects. The non-uniformity will be reduced by non-uniformity correction (NUC) algorithms. The NUC algorithms are often divided into calibration-based non-uniformity correction (CBNUC) algorithms and scene-based non-uniformity correction (SBNUC) algorithms. As non-uniformity drifts temporally, CBNUC algorithms must be repeated by inserting a uniform radiation source which SBNUC algorithms do not need into the view, so the SBNUC algorithm becomes an essential part of infrared imaging system. The SBNUC algorithms' poor robustness often leads two defects: artifacts and over-correction, meanwhile due to complicated calculation process and large storage consumption, hardware implementation of the SBNUC algorithms is difficult, especially in Field Programmable Gate Array (FPGA) platform. The THP and GM algorithm proposed in this paper can eliminate the non-uniformity without causing defects. The hardware implementation of the algorithm only based on FPGA has two advantages: (1) low resources consumption, and (2) small hardware delay: less than 20 lines, it can be transplanted to a variety of infrared detectors equipped with FPGA image processing module, it can reduce the stripe non-uniformity and the ripple non-uniformity.

  12. Microchannel-flowed-plasma modification of octadecyltrichlorosilane self-assembled-monolayers for liquid crystal alignment

    International Nuclear Information System (INIS)

    Zheng, W.; Chiang, C.-Y.; Underwood, I.

    2013-01-01

    We report that a chemical patterning technique based on local plasma modification of self-assembled monolayers has been utilized to fabricate surfaces for domain liquid crystal alignment. Highly hydrophobic octadecyltrichlorosilane monolayers deposited on glass substrates coated with Indium-Tin-Oxide were brought into contact with elastomeric stamps comprising trenches on a micro scale, and then exposed to an oxygen plasma. In the regions exposed to the plasma the monolayer was etched away leaving a patterned surface that exhibited surface energy differences between surface domains. The surfaces that bear the micropatterns have been shown to be capable of producing patterned alignment of nematic liquid crystal. - Highlights: • Chemical surface-patterning is used to fabricate liquid crystal alignment surface. • Highly hydrophobic octadecyltrichlorosilane monolayer is deposited on substrate. • O 2 plasma flow is used to etch the monolayer to form patterned surface. • The patterned surface exhibits surface energy differences between surface domains. • The surface borne the micropatterns is capable of domain liquid crystal alignment

  13. Skin carcinogenesis following uniform and non-uniform β irradiation

    International Nuclear Information System (INIS)

    Charles, M.W.; Williams, J.P.; Coggle, J.E.

    1989-01-01

    Where workers or the general public may be exposed to ionising radiation, the irradiation is rarely uniform. The risk figures and dose limits recommended by the International Commission on Radiological Protection (ICRP) are based largely on clinical and epidemiological studies of reasonably uniform irradiated organs. The paucity of clinical or experimental data for highly non-uniform exposures has prevented the ICRP from providing adequate recommendations. This weakness has led on a number of occasions to the postulate that highly non-uniform exposures of organs could be 100,000 times more carcinogenic than ICRP risk figures would predict. This so-called ''hot-particle hypothesis'' found little support among reputable radiobiologists, but could not be clearly and definitively refuted on the basis of experiment. An experiment, based on skin tumour induction in mouse skin, is described which was developed to test the hypothesis. The skin of 1200 SAS/4 male mice has been exposed to a range of uniform and non-uniform sources of the β emitter 170 Tm (E max ∼ 1 MeV). Non-uniform exposures were produced using arrays of 32 or 8 2-mm diameter sources distributed over the same 8-cm 2 area as a uniform control source. Average skin doses varied from 2-100 Gy. The results for the non-uniform sources show a 30% reduction in tumour incidence by the 32-point array at the lower mean doses compared with the response from uniform sources. The eight-point array showed an order-of-magnitude reduction in tumour incidence compared to uniform irradiation at low doses. These results, in direct contradiction to the ''hot particle hypothesis'', indicate that non-uniform exposures produce significantly fewer tumours than uniform exposures. (author)

  14. Decomposed Photo Response Non-Uniformity for Digital Forensic Analysis

    Science.gov (United States)

    Li, Yue; Li, Chang-Tsun

    The last few years have seen the applications of Photo Response Non-Uniformity noise (PRNU) - a unique stochastic fingerprint of image sensors, to various types of digital forensic investigations such as source device identification and integrity verification. In this work we proposed a new way of extracting PRNU noise pattern, called Decomposed PRNU (DPRNU), by exploiting the difference between the physical andartificial color components of the photos taken by digital cameras that use a Color Filter Array for interpolating artificial components from physical ones. Experimental results presented in this work have shown the superiority of the proposed DPRNU to the commonly used version. We also proposed a new performance metrics, Corrected Positive Rate (CPR) to evaluate the performance of the common PRNU and the proposed DPRNU.

  15. Vortices in nonuniform upper-hybrid field

    International Nuclear Information System (INIS)

    Davydova, T.A.; Vranjes, J.

    1992-01-01

    The equations describing the interaction of an upper-hybrid pump wave with small low-frequency density perturbations are discussed under assumption that the pump is spatially nonuniform. The conditions for the modulational instability are investigated. Instead of a dispersion relation, describing the growth of perturbations in the case of an uniform pump, in our case of nonuniform pump a differential equation is obtained and from its eigenvalues are found the instability criteria. Taking into account the slow-frequency self-interaction terms some localized solutions similar to dipole vortices are found, but described by analytic functions in all space. It is shown that their characteristic size and speed are determined by the pump intensity and its spatial structure. (au)

  16. Below-threshold harmonic generation from strong non-uniform fields

    Science.gov (United States)

    Yavuz, I.

    2017-10-01

    Strong-field photoemission below the ionization threshold is a rich/complex region where atomic emission and harmonic generation may coexist. We studied the mechanism of below-threshold harmonics (BTH) from spatially non-uniform local fields near the metallic nanostructures. Discrete harmonics are generated due to the broken inversion symmetry, suggesting enriched coherent emission in the vuv frequency range. Through the numerical solution of the time-dependent Schrödinger equation, we investigate wavelength and intensity dependence of BTH. Wavelength dependence identifies counter-regular resonances; individual contributions from the multi-photon emission and channel-closing effects due to quantum path interferences. In order to understand the underlying mechanism of BTH, we devised a generalized semi-classical model, including the influence of Coulomb and non-uniform field interactions. As in uniform fields, Coulomb potential in non-uniform fields is the determinant of BTH; we observed that the generation of BTH are due to returning trajectories with negative energies. Due to large distance effectiveness of the non-uniformity, only long trajectories are noticeably affected.

  17. A method to measure the mean thickness and non-uniformity of non-uniform thin film by alpha-ray thickness gauge

    International Nuclear Information System (INIS)

    Miyahara, Hiroshi; Yoshida, Makoto; Watanabe, Tamaki

    1977-01-01

    The α-ray thickness gauge is used to measure non-destructively the thicknesses of thin films, and up to the present day, a thin film with uniform thickness is only taken up as the object of α-ray thickness gauge. When the thickness is determined from the displacement between the absorption curves in the presence and absence of thin film, the absorption curve must be displaced in parallel. When many uniform particles were dispersed as sample, the shape of the absorption curve was calculated as the sum of many absorption curves corresponding to the thin films with different thicknesses. By the comparison of the calculated and measured absorption curves, the number of particles, or the mean superficial density can be determined. This means the extension of thickness measurement from uniform to non-uniform films. Furthermore, these particle models being applied to non-uniform thin film, the possibility of measuring the mean thickness and non-uniformity was discussed. As the result, if the maximum difference of the thickness was more than 0.2 mg/cm 2 , the nonuniformity was considered to distinguish by the usual equipment. In this paper, an α-ray thickness gauge using the absorption curve method was treated, but one can apply this easily to an α-ray thickness gauge using α-ray energy spectra before and after the penetration of thin film. (auth.)

  18. Electrospun nanofiber reinforcement of dental composites with electromagnetic alignment approach

    International Nuclear Information System (INIS)

    Uyar, Tansel; Çökeliler, Dilek; Doğan, Mustafa; Koçum, Ismail Cengiz; Karatay, Okan; Denkbaş, Emir Baki

    2016-01-01

    Polymethylmethacrylate (PMMA) is commonly used as a base acrylic denture material with benefits of rapid and easy handling, however, when it is used in prosthetic dentistry, fracturing or cracking problems can be seen due to the relatively low strength issues. Besides, acrylic resin is the still prominent material for denture fabrication due to its handy and low cost features. Numerous proposed fillers that are used to produce PMMA composites, however electrospun polyvinylalcohol (PVA) nanofiber fillers for production of PMMA composite resins are not studied as much as the others. The other focus of the practice is to compare both mechanical properties and efficiency of aligned fibers versus non-aligned PVA nanofibers in PMMA based dental composites. Field-controlled electrospinning system is manufactured and provided good alignment in lab scale as one of contributions. Some novel auxiliary electrodes in controlled structure are augmented to obtain different patterns of alignment with a certain range of fiber diameters. Scanning electron microscopy is used for physical characterization to determine the range of fiber diameters. Non-woven fiber has no unique pattern due to chaotic nature of electrospinning process, but aligned fibers have round pattern or crossed lines. These produced fibers are structured as layer-by-layer form with different features, and these features are used in producing PMMA dental composites with different volume ratios. The maximum flexural strength figure shows that fiber load by weight of 0.25% w/w and above improves in the maximum level. As a result, mechanical properties of PMMA dental composites are improved by using PVA nanofibers as a filler, however the improvement was higher when aligned PVA nanofibers are used. The maximum values were 5.1 MPa (flexural strength), 0.8 GPa (elastic modulus), and 170 kJ/m 3 (toughness) in three-point bending test. In addition to the positive results of aligned and non-aligned nanofibers it was found

  19. Electrospun nanofiber reinforcement of dental composites with electromagnetic alignment approach

    Energy Technology Data Exchange (ETDEWEB)

    Uyar, Tansel [Department of Biomedical Engineering, Başkent University Bağlıca Campus, 06530 Ankara (Turkey); Çökeliler, Dilek, E-mail: cokeliler@baskent.edu.tr [Department of Biomedical Engineering, Başkent University Bağlıca Campus, 06530 Ankara (Turkey); Doğan, Mustafa [Department of Electrical and Electronics Engineering, Başkent University, Ankara 06180 (Turkey); Koçum, Ismail Cengiz [Department of Biomedical Engineering, Başkent University Bağlıca Campus, 06530 Ankara (Turkey); Karatay, Okan [Department of Electrical and Electronics Engineering, Başkent University, Ankara 06180 (Turkey); Denkbaş, Emir Baki [Department of Chemistry, Biochemistry Division, Hacettepe University, Ankara (Turkey)

    2016-05-01

    Polymethylmethacrylate (PMMA) is commonly used as a base acrylic denture material with benefits of rapid and easy handling, however, when it is used in prosthetic dentistry, fracturing or cracking problems can be seen due to the relatively low strength issues. Besides, acrylic resin is the still prominent material for denture fabrication due to its handy and low cost features. Numerous proposed fillers that are used to produce PMMA composites, however electrospun polyvinylalcohol (PVA) nanofiber fillers for production of PMMA composite resins are not studied as much as the others. The other focus of the practice is to compare both mechanical properties and efficiency of aligned fibers versus non-aligned PVA nanofibers in PMMA based dental composites. Field-controlled electrospinning system is manufactured and provided good alignment in lab scale as one of contributions. Some novel auxiliary electrodes in controlled structure are augmented to obtain different patterns of alignment with a certain range of fiber diameters. Scanning electron microscopy is used for physical characterization to determine the range of fiber diameters. Non-woven fiber has no unique pattern due to chaotic nature of electrospinning process, but aligned fibers have round pattern or crossed lines. These produced fibers are structured as layer-by-layer form with different features, and these features are used in producing PMMA dental composites with different volume ratios. The maximum flexural strength figure shows that fiber load by weight of 0.25% w/w and above improves in the maximum level. As a result, mechanical properties of PMMA dental composites are improved by using PVA nanofibers as a filler, however the improvement was higher when aligned PVA nanofibers are used. The maximum values were 5.1 MPa (flexural strength), 0.8 GPa (elastic modulus), and 170 kJ/m{sup 3} (toughness) in three-point bending test. In addition to the positive results of aligned and non-aligned nanofibers it was

  20. Non-uniform distribution pattern for differentially expressed genes of transgenic rice Huahui 1 at different developmental stages and environments.

    Directory of Open Access Journals (Sweden)

    Zhi Liu

    Full Text Available DNA microarray analysis is an effective method to detect unintended effects by detecting differentially expressed genes (DEG in safety assessment of genetically modified (GM crops. With the aim to reveal the distribution of DEG of GM crops under different conditions, we performed DNA microarray analysis using transgenic rice Huahui 1 (HH1 and its non-transgenic parent Minghui 63 (MH63 at different developmental stages and environmental conditions. Considerable DEG were selected in each group of HH1 under different conditions. For each group of HH1, the number of DEG was different; however, considerable common DEG were shared between different groups of HH1. These findings suggested that both DEG and common DEG were adequate for investigation of unintended effects. Furthermore, a number of significantly changed pathways were found in all groups of HH1, indicating genetic modification caused everlasting changes to plants. To our knowledge, our study for the first time provided the non-uniformly distributed pattern for DEG of GM crops at different developmental stages and environments. Our result also suggested that DEG selected in GM plants at specific developmental stage and environment could act as useful clues for further evaluation of unintended effects of GM plants.

  1. Design of Nonuniform Filter Bank Transceivers for Frequency Selective Channels

    Directory of Open Access Journals (Sweden)

    Yuan-Pei Lin

    2007-01-01

    Full Text Available In recent years, there has been considerable interest in the theory and design of filter bank transceivers due to their superior frequency response. In many applications, it is desired to have transceivers that can support multiple services with different incoming data rates and different quality-of-service requirements. To meet these requirements, we can either do resource allocation or design transceivers with a nonuniform bandwidth partition. In this paper, we propose a method for the design of nonuniform filter bank transceivers for frequency selective channels. Both frequency response and signal-to-interference ratio (SIR can be incorporated in the transceiver design. Moreover, the technique can be extended to the case of nonuniform filter bank transceivers with rational sampling factors. Simulation results show that nonuniform filter bank transceivers with good filter responses as well as high SIR can be obtained by the proposed design method.

  2. Ink-jet printing technology enables self-aligned mould patterning for electroplating in a single step

    International Nuclear Information System (INIS)

    Meissner, M V; Spengler, N; Mager, D; Wang, N; Kiss, S Z; Höfflin, J; While, P T; Korvink, J G

    2015-01-01

    We present a new self-aligned, mask-free micro-fabrication method with which to form thick-layered conductive metal micro-structures inside electroplating moulds. Seed layer patterning for electroplating was performed by ink-jet printing using a silver nano-particle ink deposited on SU-8 or Ordyl SY permanent resist. The silver ink contact angle on SU-8 was adjusted by oxygen plasma followed by a hard bake. Besides functioning as a seed layer, the printed structures further served as a shadow mask during patterning of electroplating moulds into negative photoresist. The printed silver tracks remained in strong adhesion to the substrate when exposed to the acidic chemistry of the electroplating bath. To demonstrate the process, we manufactured rectangular, low-resistivity planar micro-coils for use in magnetic resonance microscopy. MRI images of a spring onion with an in-plane resolution down to 10 µm × 10 µm were acquired using a micro-coil on an 11.7 T MRI scanner. (paper)

  3. Prosody and alignment: a sequential perspective

    Science.gov (United States)

    Szczepek Reed, Beatrice

    2010-12-01

    In their analysis of a corpus of classroom interactions in an inner city high school, Roth and Tobin describe how teachers and students accomplish interactional alignment by prosodically matching each other's turns. Prosodic matching, and specific prosodic patterns are interpreted as signs of, and contributions to successful interactional outcomes and positive emotions. Lack of prosodic matching, and other specific prosodic patterns are interpreted as features of unsuccessful interactions, and negative emotions. This forum focuses on the article's analysis of the relation between interpersonal alignment, emotion and prosody. It argues that prosodic matching, and other prosodic linking practices, play a primarily sequential role, i.e. one that displays the way in which participants place and design their turns in relation to other participants' turns. Prosodic matching, rather than being a conversational action in itself, is argued to be an interactional practice (Schegloff 1997), which is not always employed for the accomplishment of `positive', or aligning actions.

  4. Illumination non-uniformity of spirally wobbling beam in heavy ion fusion

    International Nuclear Information System (INIS)

    Suzuki, T.; Noguchi, K.; Kurosaki, T.; Barada, D.; Kawata, S.; Ma, Y. Y.; Ogoyski, A.I.

    2016-01-01

    In inertial confinement fusion, the driver beam illumination non-uniformity leads a degradation of fusion energy output. The illumination non-uniformity allowed is less than a few percent in inertial fusion target implosion. Heavy ion beam (HIB) accelerator provides a capability to oscillate a beam axis with a high frequency. The wobbling beams may provide a new method to reduce or smooth the beam illumination non-uniformity. In this paper the HIBs wobbling illumination scheme was optimized. (paper)

  5. Magnetic-field-aligned characteristics of plasma bubbles in the nighttime equatorial ionosphere

    International Nuclear Information System (INIS)

    Tsunoda, R.T.

    1980-01-01

    Measurements of both incoherent-scatter (IS) and backscatter from field-aligned irregularities (FAI) were made in 1978 with ALTAIR, a fully-steerable high-power radar, to investigate the magnetic-field-aligned characteristics of equatorial plasma bubbles. By operating the radar in a latitude-scan IS mode it was possible to map the location and percentage depletion of plasma bubbles as a function of altitude. By showing that backscatter from FAI is spatially collocated with the upper wall of plasma bubbles it was possible to use the spatial displacement of a field aligned backscatter region to estimate the upward bubble velocity. Besides showing that plasma bubbles are indeed aligned along magnetic field lines, this data set is used to show that a plasma bubble with a percentage depletion of as much as 90% does not have as large an upward velocity as predicted by two-dimensional models. Instead, the inferred bubble velocity is shown to be in better agreement with the bubble velocity predicted by theoretical models using flux-integrated values of electron density and Pedersen conductivity. The need to use flux-tube-integrated values when comparing theory and observation is further stressed by the presence of a non-uniform latitudinal distribution of electron density (i.e. the equatorial anomaly) that was found in the latitude-scan data. (author)

  6. A method for real time detecting of non-uniform magnetic field

    Science.gov (United States)

    Marusenkov, Andriy

    2015-04-01

    The principle of measuring magnetic signatures for observing diverse objects is widely used in Near Surface work (unexploded ordnance (UXO); engineering & environmental; archaeology) and security and vehicle detection systems as well. As a rule, the magnitude of the signals to be measured is much lower than that of the quasi-uniform Earth magnetic field. Usually magnetometers for these purposes contain two or more spatially separated sensors to estimate the full tensor gradient of the magnetic field or, more frequently, only partial gradient components. The both types (scalar and vector) of magnetic sensors could be used. The identity of the scale factors and proper alignment of the sensitivity axes of the vector sensors are very important for deep suppression of the ambient field and detection of weak target signals. As a rule, the periodical calibration procedure is used to keep matching sensors' parameters as close as possible. In the present report we propose the technique for detection magnetic anomalies, which is almost insensitive to imperfect matching of the sensors. This method based on the idea that the difference signals between two sensors are considerably different when the instrument is rotated or moved in uniform and non-uniform fields. Due to the misfit of calibration parameters the difference signal observed at the rotation in the uniform field is similar to the total signal - the sum of the signals of both sensors. Zero change of the difference and total signals is expected, if the instrument moves in the uniform field along a straight line. In contrast, the same move in the non-uniform field produces some response of each of the sensors. In case one measures dB/dx and moves along x direction, the sensors signals is shifted in time with the lag proportional to the distance between sensors and the speed of move. It means that the difference signal looks like derivative of the total signal at move in the non-uniform field. So, using quite simple

  7. Noise power spectrum of the fixed pattern noise in digital radiography detectors

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Dong Sik, E-mail: dskim@hufs.ac.kr [Department of Electronics Engineering, Hankuk University of Foreign Studies, Gyeonggi-do 449-791 (Korea, Republic of); Kim, Eun [R& D Center, DRTECH Co., Gyeonggi-do 13558 (Korea, Republic of)

    2016-06-15

    Purpose: The fixed pattern noise in radiography image detectors is caused by various sources. Multiple readout circuits with gate drivers and charge amplifiers are used to efficiently acquire the pixel voltage signals. However, the multiple circuits are not identical and thus yield nonuniform system gains. Nonuniform sensitivities are also produced from local variations in the charge collection elements. Furthermore, in phosphor-based detectors, the optical scattering at the top surface of the columnar CsI growth, the grain boundaries, and the disorder structure causes spatial sensitivity variations. These nonuniform gains or sensitivities cause fixed pattern noise and degrade the detector performance, even though the noise problem can be partially alleviated by using gain correction techniques. Hence, in order to develop good detectors, comparative analysis of the energy spectrum of the fixed pattern noise is important. Methods: In order to observe the energy spectrum of the fixed pattern noise, a normalized noise power spectrum (NNPS) of the fixed pattern noise is considered in this paper. Since the fixed pattern noise is mainly caused by the nonuniform gains, we call the spectrum the gain NNPS. We first asymptotically observe the gain NNPS and then formulate two relationships to calculate the gain NNPS based on a nonuniform-gain model. Since the gain NNPS values are quite low compared to the usual NNPS, measuring such a low NNPS value is difficult. By using the average of the uniform exposure images, a robust measuring method for the gain NNPS is proposed in this paper. Results: By using the proposed measuring method, the gain NNPS curves of several prototypes of general radiography and mammography detectors were measured to analyze their fixed pattern noise properties. We notice that a direct detector, which is based on the a-Se photoconductor, showed lower gain NNPS than the indirect-detector case, which is based on the CsI scintillator. By comparing the gain

  8. AlignNemo: a local network alignment method to integrate homology and topology.

    Directory of Open Access Journals (Sweden)

    Giovanni Ciriello

    Full Text Available Local network alignment is an important component of the analysis of protein-protein interaction networks that may lead to the identification of evolutionary related complexes. We present AlignNemo, a new algorithm that, given the networks of two organisms, uncovers subnetworks of proteins that relate in biological function and topology of interactions. The discovered conserved subnetworks have a general topology and need not to correspond to specific interaction patterns, so that they more closely fit the models of functional complexes proposed in the literature. The algorithm is able to handle sparse interaction data with an expansion process that at each step explores the local topology of the networks beyond the proteins directly interacting with the current solution. To assess the performance of AlignNemo, we ran a series of benchmarks using statistical measures as well as biological knowledge. Based on reference datasets of protein complexes, AlignNemo shows better performance than other methods in terms of both precision and recall. We show our solutions to be biologically sound using the concept of semantic similarity applied to Gene Ontology vocabularies. The binaries of AlignNemo and supplementary details about the algorithms and the experiments are available at: sourceforge.net/p/alignnemo.

  9. Non-uniformity calibration for MWIR polarization imagery obtained with integrated microgrid polarimeters

    Science.gov (United States)

    Liu, Hai-Zheng; Shi, Ze-Lin; Feng, Bin; Hui, Bin; Zhao, Yao-Hong

    2016-03-01

    Integrating microgrid polarimeters on focal plane array (FPA) of an infrared detector causes non-uniformity of polarization response. In order to reduce the effect of polarization non-uniformity, this paper constructs an experimental setup for capturing raw flat-field images and proposes a procedure for acquiring non-uniform calibration (NUC) matrix and calibrating raw polarization images. The proposed procedure takes the incident radiation as a polarization vector and offers a calibration matrix for each pixel. Both our matrix calibration and two-point calibration are applied to our mid-wavelength infrared (MWIR) polarization imaging system with integrated microgrid polarimeters. Compared with two point calibration, our matrix calibration reduces non-uniformity by 30 40% under condition of flat-field data test with polarization. The ourdoor scene observation experiment indicates that our calibration can effectively reduce polarization non-uniformity and improve the image quality of our MWIR polarization imaging system.

  10. Highly Anisotropic Adhesive Film Made from Upside-Down, Flat, and Uniform Vertically Aligned CNTs.

    Science.gov (United States)

    Hong, Sanghyun; Lundstrom, Troy; Ghosh, Ranajay; Abdi, Hamed; Hao, Ji; Jeoung, Sun Kyoung; Su, Paul; Suhr, Jonghwan; Vaziri, Ashkan; Jalili, Nader; Jung, Yung Joon

    2016-12-14

    We have created a multifunctional dry adhesive film with transferred vertically aligned carbon nanotubes (VA-CNTs). This unique VA-CNT film was fabricated by a multistep transfer process, converting the flat and uniform bottom of VA-CNTs grown on atomically flat silicon wafer substrates into the top surface of an adhesive layer. Unlike as-grown VA-CNTs, which have a nonuniform surface, randomly entangled CNT arrays, and a weak interface between the CNTs and substrates, this transferred VA-CNT film shows an extremely high coefficient of static friction (COF) of up to 60 and a shear adhesion force 30 times higher (12 N/cm 2 ) than that of the as-grown VA-CNTs under a very small preloading of 0.2 N/cm 2 . Moreover, a near-zero normal adhesion force was observed with 20 mN/cm 2 preloading and a maximum 100-μm displacement in a piezo scanner, demonstrating ideal properties for an artificial gecko foot. Using this unique structural feature and anisotropic adhesion properties, we also demonstrate effective removal and assembly of nanoparticles into organized micrometer-scale circular and line patterns by a single brushing of this flat and uniform VA-CNT film.

  11. LDPC Code Design for Nonuniform Power-Line Channels

    Directory of Open Access Journals (Sweden)

    Sanaei Ali

    2007-01-01

    Full Text Available We investigate low-density parity-check code design for discrete multitone channels over power lines. Discrete multitone channels are well modeled as nonuniform channels, that is, different bits experience various channel parameters. We propose a coding system for discrete multitone channels that allows for using a single code over a nonuniform channel. The number of code parameters for the proposed system is much greater than the number of code parameters in conventional channel. Therefore, search-based optimization methods are impractical. We first formulate the problem of optimizing the rate of an irregular low-density parity-check code, with guaranteed convergence over a general nonuniform channel, as an iterative linear programming which is significantly more efficient than search-based methods. Then we use this technique for a typical power-line channel. The methodology of this paper is directly applicable to all decoding algorithms for which a density evolution analysis is possible.

  12. Investigating conversational dynamics: Interactive alignment, Interpersonal synergy, and collective task performance

    DEFF Research Database (Denmark)

    Fusaroli, Riccardo; Tylén, Kristian

    2016-01-01

    This study investigates interpersonal processes underlying dialog by comparing two approaches, interactive alignment and interpersonal synergy, and assesses how they predict collective performance in a joint task. While the interactive alignment approach highlights imitative patterns between...... and their impact on collective performance in a corpus of task-oriented conversations. The results show statistical presence of patterns relevant for both approaches. However, synergetic aspects of dialog provide the best statistical predictors of collective performance and adding aspects of the alignment approach...... does not improve the model. This suggests that structural organization at the level of the interaction plays a crucial role in task-oriented conversations, possibly constraining and integrating processes related to alignment....

  13. Buoyant convection during Czochralski silicon growth with a strong, non-uniform, axisymmetric magnetic field

    Science.gov (United States)

    Khine, Y. Y.; Walker, J. S.

    1995-02-01

    This paper treats the buoyant convection during the Czochralski growth of silicon crystals with a steady, strong, non-uniform, axisymmetric magnetic field. We consider a family of magnetic fields which includes a uniform axial magnetic field and a "cusp" field which is produced by identical solenoids placed symmetrically above and below the plane of the crystal-melt interface and free surface. We investigate the evolution of the buoyant convection as the magnetic field is changed continuously from a uniform axial field to a cusp field, with a constant value of the root-mean-squared magnetic flux density in the melt. We also investigate changes as the magnetic flux density is increased. While the cusp field appears very promising, perfect alignment between the local magnetic field vector and the crystal-melt interface or free surface is not possible, so the effects of a slight misalignment are also investigated.

  14. Roughness and uniformity improvements on self-aligned quadruple patterning technique for 10nm node and beyond by wafer stress engineering

    Science.gov (United States)

    Liu, Eric; Ko, Akiteru; O'Meara, David; Mohanty, Nihar; Franke, Elliott; Pillai, Karthik; Biolsi, Peter

    2017-05-01

    Dimension shrinkage has been a major driving force in the development of integrated circuit processing over a number of decades. The Self-Aligned Quadruple Patterning (SAQP) technique is widely adapted for sub-10nm node in order to achieve the desired feature dimensions. This technique provides theoretical feasibility of multiple pitch-halving from 193nm immersion lithography by using various pattern transferring steps. The major concept of this approach is to a create spacer defined self-aligned pattern by using single lithography print. By repeating the process steps, double, quadruple, or octuple are possible to be achieved theoretically. In these small architectures, line roughness control becomes extremely important since it may contribute to a significant portion of process and device performance variations. In addition, the complexity of SAQP in terms of processing flow makes the roughness improvement indirective and ineffective. It is necessary to discover a new approach in order to improve the roughness in the current SAQP technique. In this presentation, we demonstrate a novel method to improve line roughness performances on 30nm pitch SAQP flow. We discover that the line roughness performance is strongly related to stress management. By selecting different stress level of film to be deposited onto the substrate, we can manipulate the roughness performance in line and space patterns. In addition, the impact of curvature change by applied film stress to SAQP line roughness performance is also studied. No significant correlation is found between wafer curvature and line roughness performance. We will discuss in details the step-by-step physical performances for each processing step in terms of critical dimension (CD)/ critical dimension uniformity (CDU)/line width roughness (LWR)/line edge roughness (LER). Finally, we summarize the process needed to reach the full wafer performance targets of LWR/LER in 1.07nm/1.13nm on 30nm pitch line and space pattern.

  15. Light extraction in planar light-emitting diode with nonuniform current injection: model and simulation.

    Science.gov (United States)

    Khmyrova, Irina; Watanabe, Norikazu; Kholopova, Julia; Kovalchuk, Anatoly; Shapoval, Sergei

    2014-07-20

    We develop an analytical and numerical model for performing simulation of light extraction through the planar output interface of the light-emitting diodes (LEDs) with nonuniform current injection. Spatial nonuniformity of injected current is a peculiar feature of the LEDs in which top metal electrode is patterned as a mesh in order to enhance the output power of light extracted through the top surface. Basic features of the model are the bi-plane computation domain, related to other areas of numerical grid (NG) cells in these two planes, representation of light-generating layer by an ensemble of point light sources, numerical "collection" of light photons from the area limited by acceptance circle and adjustment of NG-cell areas in the computation procedure by the angle-tuned aperture function. The developed model and procedure are used to simulate spatial distributions of the output optical power as well as the total output power at different mesh pitches. The proposed model and simulation strategy can be very efficient in evaluation of the output optical performance of LEDs with periodical or symmetrical configuration of the electrodes.

  16. Non-uniform tube representation of proteins

    DEFF Research Database (Denmark)

    Hansen, Mikael Sonne

    Treating the full protein structure is often neither computationally nor physically possible. Instead one is forced to consider various reduced models capturing the properties of interest. Previous work have used tubular neighborhoods of the C-alpha backbone. However, assigning a unique radius...... might not correctly capture volume exclusion - of crucial importance when trying to understand a proteins $3$d-structure. We propose a new reduced model treating the protein as a non-uniform tube with a radius reflecting the positions of atoms. The tube representation is well suited considering X......-ray crystallographic resolution ~ 3Å while a varying radius accounts for the different sizes of side chains. Such a non-uniform tube better capture the protein geometry and has numerous applications in structural/computational biology from the classification of protein structures to sequence-structure prediction....

  17. Synthesis of Patterned Vertically Aligned Carbon Nanotubes by PECVD Using Different Growth Techniques: A Review.

    Science.gov (United States)

    Gangele, Aparna; Sharma, Chandra Shekhar; Pandey, Ashok Kumar

    2017-04-01

    Immense development has been taken place not only to increase the bulk production, repeatability and yield of carbon nanotubes (CNTs) in last 25 years but preference is also given to acknowledge the basic concepts of nucleation and growth methods. Vertically aligned carbon nanotubes (VAC-NTs) are forest of CNTs accommodated perpendicular on a substrate. Their exceptional chemical and physical properties along with sequential arrangement and dense structure make them suitable in various fields. The effect of different type of selected substrate, carbon precursor, catalyst and their physical and chemical status, reaction conditions and many other key parameters have been thoroughly studied and analysed. The aim of this paper is to specify the trend and summarize the effect of key parameters instead of only presenting all the experiments reported till date. The identified trends will be compared with the recent observations on the growth of different types of patterned VACNTs. In this review article, we have presented a comprehensive analysis of different techniques to precisely determine the role of different parameters responsible for the growth of patterned vertical aligned carbon nanotubes. We have covered various techniques proposed in the span of more than two decades to fabricate the different structures and configurations of carbon nanotubes on different types of substrates. Apart from a detailed discussion of each technique along with their specific process and implementation, we have also provided a critical analysis of the associated constraints, benefits and shortcomings. To sum it all for easy reference for researchers, we have tabulated all the techniques based on certain main key factors. This review article comprises of an exhaustive discussion and a handy reference for researchers who are new in the field of synthesis of CNTs or who wants to get abreast with the techniques of determining the growth of VACNTs arrays.

  18. Correction method and software for image distortion and nonuniform response in charge-coupled device-based x-ray detectors utilizing x-ray image intensifier

    International Nuclear Information System (INIS)

    Ito, Kazuki; Kamikubo, Hironari; Yagi, Naoto; Amemiya, Yoshiyuki

    2005-01-01

    An on-site method of correcting the image distortion and nonuniform response of a charge-coupled device (CCD)-based X-ray detector was developed using the response of the imaging plate as a reference. The CCD-based X-ray detector consists of a beryllium-windowed X-ray image intensifier (Be-XRII) and a CCD as the image sensor. An image distortion of 29% was improved to less than 1% after the correction. In the correction of nonuniform response due to image distortion, subpixel approximation was performed for the redistribution of pixel values. The optimal number of subpixels was also discussed. In an experiment with polystyrene (PS) latex, it was verified that the correction of both image distortion and nonuniform response worked properly. The correction for the 'contrast reduction' problem was also demonstrated for an isotropic X-ray scattering pattern from the PS latex. (author)

  19. Parallel processing and non-uniform grids in global air quality modeling

    NARCIS (Netherlands)

    Berkvens, P.J.F.; Bochev, Mikhail A.

    2002-01-01

    A large-scale global air quality model, running efficiently on a single vector processor, is enhanced to make more realistic and more long-term simulations feasible. Two strategies are combined: non-uniform grids and parallel processing. The communication through the hierarchy of non-uniform grids

  20. Space cutter compensation method for five-axis nonuniform rational basis spline machining

    Directory of Open Access Journals (Sweden)

    Yanyu Ding

    2015-07-01

    Full Text Available In view of the good machining performance of traditional three-axis nonuniform rational basis spline interpolation and the space cutter compensation issue in multi-axis machining, this article presents a triple nonuniform rational basis spline five-axis interpolation method, which uses three nonuniform rational basis spline curves to describe cutter center location, cutter axis vector, and cutter contact point trajectory, respectively. The relative position of the cutter and workpiece is calculated under the workpiece coordinate system, and the cutter machining trajectory can be described precisely and smoothly using this method. The three nonuniform rational basis spline curves are transformed into a 12-dimentional Bézier curve to carry out discretization during the discrete process. With the cutter contact point trajectory as the precision control condition, the discretization is fast. As for different cutters and corners, the complete description method of space cutter compensation vector is presented in this article. Finally, the five-axis nonuniform rational basis spline machining method is further verified in a two-turntable five-axis machine.

  1. Downsampling Non-Uniformly Sampled Data

    Directory of Open Access Journals (Sweden)

    Fredrik Gustafsson

    2007-10-01

    Full Text Available Decimating a uniformly sampled signal a factor D involves low-pass antialias filtering with normalized cutoff frequency 1/D followed by picking out every Dth sample. Alternatively, decimation can be done in the frequency domain using the fast Fourier transform (FFT algorithm, after zero-padding the signal and truncating the FFT. We outline three approaches to decimate non-uniformly sampled signals, which are all based on interpolation. The interpolation is done in different domains, and the inter-sample behavior does not need to be known. The first one interpolates the signal to a uniformly sampling, after which standard decimation can be applied. The second one interpolates a continuous-time convolution integral, that implements the antialias filter, after which every Dth sample can be picked out. The third frequency domain approach computes an approximate Fourier transform, after which truncation and IFFT give the desired result. Simulations indicate that the second approach is particularly useful. A thorough analysis is therefore performed for this case, using the assumption that the non-uniformly distributed sampling instants are generated by a stochastic process.

  2. Sparse alignment for robust tensor learning.

    Science.gov (United States)

    Lai, Zhihui; Wong, Wai Keung; Xu, Yong; Zhao, Cairong; Sun, Mingming

    2014-10-01

    Multilinear/tensor extensions of manifold learning based algorithms have been widely used in computer vision and pattern recognition. This paper first provides a systematic analysis of the multilinear extensions for the most popular methods by using alignment techniques, thereby obtaining a general tensor alignment framework. From this framework, it is easy to show that the manifold learning based tensor learning methods are intrinsically different from the alignment techniques. Based on the alignment framework, a robust tensor learning method called sparse tensor alignment (STA) is then proposed for unsupervised tensor feature extraction. Different from the existing tensor learning methods, L1- and L2-norms are introduced to enhance the robustness in the alignment step of the STA. The advantage of the proposed technique is that the difficulty in selecting the size of the local neighborhood can be avoided in the manifold learning based tensor feature extraction algorithms. Although STA is an unsupervised learning method, the sparsity encodes the discriminative information in the alignment step and provides the robustness of STA. Extensive experiments on the well-known image databases as well as action and hand gesture databases by encoding object images as tensors demonstrate that the proposed STA algorithm gives the most competitive performance when compared with the tensor-based unsupervised learning methods.

  3. Challenges in process integration of catalytic DC plasma synthesis of vertically aligned carbon nanofibres

    International Nuclear Information System (INIS)

    Melechko, Anatoli V; Pearce, Ryan C; Hensley, Dale K; Simpson, Michael L; McKnight, Timothy E

    2011-01-01

    The ability to synthesize free-standing, individual carbon nanofibres (CNFs) aligned perpendicularly to a substrate has enabled fabrication of a large array of devices with nanoscale functional elements, including electron field emission sources, electrochemical probes, neural interface arrays, scanning probes, gene delivery arrays and many others. This was made possible by development of a catalytic plasma process, with DC bias directing the alignment of nanofibres. Successful implementation of prototypical devices has uncovered numerous challenges in the integration of this synthesis process as one of the steps in device fabrication. This paper is dedicated to these engineering and fundamental difficulties that hinder further device development. Relatively high temperature for catalytic synthesis, electrical conductivity of the substrate to maintain DC discharge and other difficulties place restrictions on substrate material. Balancing non-catalytic carbon film deposition and substrate etching, non-uniformity of plasma due to growth of the high aspect ratio structures, plasma instabilities and other factors lead to challenges in controlling the plasma. Ultimately, controlling the atomistic processes at the catalyst nanoparticle (NP) and the behaviour of the NP is the central challenge of plasma nanosynthesis of vertically aligned CNFs.

  4. Further Development of Ko Displacement Theory for Deformed Shape Predictions of Nonuniform Aerospace Structures

    Science.gov (United States)

    Ko, William L.; Fleischer, Van Tran

    2009-01-01

    The Ko displacement theory previously formulated for deformed shape predictions of nonuniform beam structures is further developed mathematically. The further-developed displacement equations are expressed explicitly in terms of geometrical parameters of the beam and bending strains at equally spaced strain-sensing stations along the multiplexed fiber-optic sensor line installed on the bottom surface of the beam. The bending strain data can then be input into the displacement equations for calculations of local slopes, deflections, and cross-sectional twist angles for generating the overall deformed shapes of the nonuniform beam. The further-developed displacement theory can also be applied to the deformed shape predictions of nonuniform two-point supported beams, nonuniform panels, nonuniform aircraft wings and fuselages, and so forth. The high degree of accuracy of the further-developed displacement theory for nonuniform beams is validated by finite-element analysis of various nonuniform beam structures. Such structures include tapered tubular beams, depth-tapered unswept and swept wing boxes, width-tapered wing boxes, and double-tapered wing boxes, all under combined bending and torsional loads. The Ko displacement theory, combined with the fiber-optic strain-sensing system, provide a powerful tool for in-flight deformed shape monitoring of unmanned aerospace vehicles by ground-based pilots to maintain safe flights.

  5. Assembly and evaluation of a pyroelectric detector bonded to vertically aligned multiwalled carbon nanotubes over thin silicon.

    Science.gov (United States)

    Theocharous, E; Theocharous, S P; Lehman, J H

    2013-11-20

    A novel pyroelectric detector consisting of a vertically aligned nanotube array on thin silicon (VANTA/Si) bonded to a 60 μm thick crystal of LiTaO₃ has been fabricated. The performance of the VANTA/Si-coated pyroelectric detector was evaluated using National Physical Laboratory's (NPL's) detector-characterization facilities. The relative spectral responsivity of the detector was found to be spectrally flat in the 0.8-24 μm wavelength range, in agreement with directional-hemispherical reflectance measurements of witness samples of the VANTA. The spatial uniformity of response of the test detector exhibited good uniformity, although the nonuniformity increased with increasing modulation frequency. The nonuniformity may be assigned either to the dimensions of the VANTA or the continuity of the bond between the VANTA/Si coating and the pyroelectric crystal substrate. The test detector exhibited a small superlinear response, which is similar to that of pyroelectric detectors coated with good quality gold-black coatings.

  6. The magnetostriction in a superconductor-magnet system under non-uniform magnetic field

    Energy Technology Data Exchange (ETDEWEB)

    Li, Xueyi; Jiang, Lang; Wu, Hao [Key Laboratory of Mechanics on Disaster and Environment in Western China attached to the Ministry of Education of China, Lanzhou University, Lanzhou, Gansu 730000 (China); Gao, Zhiwen, E-mail: gaozhw@lzu.edu.cn [Department of Mechanics and Engineering Science, College of Civil Engineering and Mechanics, Lanzhou University, Lanzhou, Gansu 730000 (China)

    2017-03-15

    Highlights: • We studied firstly magnetostriction in HTS under non-uniform magnetic field. • The superconductors may be homogeneous and nonhomogeneous. • The magnetostrictions response of the HTS is sensitive to the critical current density and amplitude of the applied magnetic field. • The magnetostriction of nonhomogeneous HTS is larger than that of homogeneous HTS. - Abstract: This paper describes a numerical model to examine the magnetostriction of bulk high-temperature superconductor (HTS) under non-uniform magnetic field in conjunction with finite element analysis. Through this model, the magnetostriction of homogeneous and nonhomogeneous HTS can be implemented under non-uniform magnetic field. Further, the effects of critical current density, applied field frequency and amplitude are also considered. The computational study can provide a fundamental mechanistic understanding the effects of non-uniform magnetic field on magnetostriction of HTS.

  7. Combined Cell Culture-Biosensing Platform Using Vertically Aligned Patterned Peptide Nanofibers for Cellular Studies

    DEFF Research Database (Denmark)

    Taskin, Mehmet B.; Sasso, Luigi; Dimaki, Maria

    2013-01-01

    it possible to avoid a loss of sensitivity because of the diffusion of the sample. The obtained results showed that the peptide nanofibers were suitable as a cell culturing substrate for PC12 cells. The peptide nanofibers could be employed as an alternative biological material to increase the adherence......This Article presents the development of a combined cell culture–biosensing platform using vertically aligned self-assembled peptide nanofibers. Peptide nanofibers were patterned on a microchip containing gold microelectrodes to provide the cells with a 3D environment enabling them to grow...... and proliferate. Gold microelectrodes were functionalized with conductive polymers for the electrochemical detection of dopamine released from PC12 cells. The combined cell culture–biosensing platform assured a close proximity of the release site, the cells and the active surface of the sensor, thereby rendering...

  8. Modelling of HVDC wall bushing flashover in nonuniform rain

    International Nuclear Information System (INIS)

    Rizk, F.A.M.; Kamel, S.I.

    1991-01-01

    This paper presents the first mathematical model to provide necessary and sufficient conditions for flashover of an HVDC wall bushing under nonuniform rain. The suggested mechanism is initiated by streamer bridging of the dry zone enhanced by nonuniform voltage distribution along the bushing and within the dry zone. Fast voltage collapse across the dry zone die to energy stored in the bushing stray capacitance to ground leads to impulsive stressing of the wet part of the bushing. The nonuniform distribution of the impulse stress and the process of streamer bridging, fast voltage collapse as well as subsequent recharging of the bushing capacitances can lead to continued discharge propagation and flashover of the complete bushing. The findings of the model have been satisfactorily compared with previous experiments and field observations and can, for the first time, account for the following aspects of the flashover mechanism: critical dry zone length, polarity effect, specific leakage path, wet layer conductance per unit leakage length as well as the DC system voltage

  9. A MEMORY EFFICIENT HARDWARE BASED PATTERN MATCHING AND PROTEIN ALIGNMENT SCHEMES FOR HIGHLY COMPLEX DATABASES

    OpenAIRE

    Bennet, M.Anto; Sankaranarayanan, S.; Deepika, M.; Nanthini, N.; Bhuvaneshwari, S.; Priyanka, M.

    2017-01-01

    Protein sequence alignment to find correlation between different species, or genetic mutations etc. is the most computational intensive task when performing protein comparison. To speed-up the alignment, Systolic Arrays (SAs) have been used. In order to avoid the internal-loop problem which reduces the performance, pipeline interleaving strategy has been presented. This strategy is applied to an SA for Smith Waterman (SW) algorithm which is an alignment algorithm to locally align two proteins...

  10. Stone Stability in Non-uniform Flow

    NARCIS (Netherlands)

    Hoan, N.T.; Stive, M.J.F.; Booij, R.; Hofland, B.; Verhagen, H.J.

    2011-01-01

    This paper presents the results of an experimental study on stone stability under nonuniform turbulent flow, in particular expanding flow. Detailed measurements of both flow and turbulence and the bed stability are described. Than various manners of quantifying the hydraulic loads exerted on the

  11. Stone Stability under Stationary Nonuniform Flows

    NARCIS (Netherlands)

    Steenstra, Remco; Hofland, B.; Paarlberg, Andries; Smale, Alfons; Huthoff, Fredrik; Uijttewaal, W.S.J.

    2016-01-01

    A stability parameter for rock in bed protections under nonuniform stationary flow is derived. The influence of the mean flow velocity, turbulence, and mean acceleration of the flow are included explicitly in the parameter. The relatively new notion of explicitly incorporating the mean acceleration

  12. Massive ordering and alignment of cylindrical micro-objects by photovoltaic optoelectronic tweezers.

    Science.gov (United States)

    Elvira, Iris; Muñoz-Martínez, Juan F; Barroso, Álvaro; Denz, Cornelia; Ramiro, José B; García-Cabañes, Angel; Agulló-López, Fernando; Carrascosa, Mercedes

    2018-01-01

    Optical tools for manipulation and trapping of micro- and nano-objects are a fundamental issue for many applications in nano- and biotechnology. This work reports on the use of one such method, known as photovoltaic optoelectronics tweezers, to orientate and organize cylindrical microcrystals, specifically elongated zeolite L, on the surface of Fe-doped LiNbO 3 crystal plates. Patterns of aligned zeolites have been achieved through the forces and torques generated by the bulk photovoltaic effect. The alignment patterns with zeolites parallel or perpendicular to the substrate surface are highly dependent on the features of light distribution and crystal configuration. Moreover, dielectrophoretic chains of zeolites with lengths up to 100 μm have often been observed. The experimental results of zeolite trapping and alignment have been discussed and compared together with theoretical simulations of the evanescent photovoltaic electric field and the dielectrophoretic potential. They demonstrate the remarkable capabilities of the optoelectronic photovoltaic method to orientate and pattern anisotropic microcrystals. The combined action of patterning and alignment offers a unique tool to prepare functional nanostructures with potential applications in a variety of fields such as nonlinear optics or plasmonics.

  13. Self-aligning and compressed autosophy video databases

    Science.gov (United States)

    Holtz, Klaus E.

    1993-04-01

    Autosophy, an emerging new science, explains `self-assembling structures,' such as crystals or living trees, in mathematical terms. This research provides a new mathematical theory of `learning' and a new `information theory' which permits the growing of self-assembling data network in a computer memory similar to the growing of `data crystals' or `data trees' without data processing or programming. Autosophy databases are educated very much like a human child to organize their own internal data storage. Input patterns, such as written questions or images, are converted to points in a mathematical omni dimensional hyperspace. The input patterns are then associated with output patterns, such as written answers or images. Omni dimensional information storage will result in enormous data compression because each pattern fragment is only stored once. Pattern recognition in the text or image files is greatly simplified by the peculiar omni dimensional storage method. Video databases will absorb input images from a TV camera and associate them with textual information. The `black box' operations are totally self-aligning where the input data will determine their own hyperspace storage locations. Self-aligning autosophy databases may lead to a new generation of brain-like devices.

  14. An improved non-uniformity correction algorithm and its GPU parallel implementation

    Science.gov (United States)

    Cheng, Kuanhong; Zhou, Huixin; Qin, Hanlin; Zhao, Dong; Qian, Kun; Rong, Shenghui

    2018-05-01

    The performance of SLP-THP based non-uniformity correction algorithm is seriously affected by the result of SLP filter, which always leads to image blurring and ghosting artifacts. To address this problem, an improved SLP-THP based non-uniformity correction method with curvature constraint was proposed. Here we put forward a new way to estimate spatial low frequency component. First, the details and contours of input image were obtained respectively by minimizing local Gaussian curvature and mean curvature of image surface. Then, the guided filter was utilized to combine these two parts together to get the estimate of spatial low frequency component. Finally, we brought this SLP component into SLP-THP method to achieve non-uniformity correction. The performance of proposed algorithm was verified by several real and simulated infrared image sequences. The experimental results indicated that the proposed algorithm can reduce the non-uniformity without detail losing. After that, a GPU based parallel implementation that runs 150 times faster than CPU was presented, which showed the proposed algorithm has great potential for real time application.

  15. Photoionization microscopy of Rydberg hydrogen atom in a non-uniform electrical field

    International Nuclear Information System (INIS)

    Cheng Shao-Hao; Wang De-Hua; Chen Zhao-Hang; Chen Qiang

    2016-01-01

    In this paper, we investigate the photoionization microscopy of the Rydberg hydrogen atom in a gradient electric field for the first time. The observed oscillatory patterns in the photoionization microscopy are explained within the framework of the semiclassical theory, which can be considered as a manifestation of interference between various electron trajectories arriving at a given point on the detector plane. In contrast with the photoionization microscopy in the uniform electric field, the trajectories of the ionized electron in the gradient electric field will become chaotic. An infinite set of different electron trajectories can arrive at a given point on the detector plane, which makes the interference pattern of the electron probability density distribution extremely complicated. Our calculation results suggest that the oscillatory pattern in the electron probability density distribution depends sensitively on the electric field gradient, the scaled energy and the position of the detector plane. Through our research, we predict that the interference pattern in the electron probability density distribution can be observed in an actual photoionization microscopy experiment once the external electric field strength and the position of the electron detector plane are reasonable. This study provides some references for the future experimental research on the photoionization microscopy of the Rydberg atom in the non-uniform external fields. (paper)

  16. Single-molecule tracking studies of flow-induced microdomain alignment in cylinder-forming polystyrene-poly(ethylene oxide) diblock copolymer films.

    Science.gov (United States)

    Tran-Ba, Khanh-Hoa; Higgins, Daniel A; Ito, Takashi

    2014-09-25

    Flow-based approaches are promising routes to preparation of aligned block copolymer microdomains within confined spaces. An in-depth characterization of such nanoscale morphologies within macroscopically nonuniform materials under ambient conditions is, however, often challenging. In this study, single-molecule tracking (SMT) methods were employed to probe the flow-induced alignment of cylindrical microdomains (ca. 22 nm in diameter) in polystyrene-poly(ethylene oxide) diblock copolymer (PS-b-PEO) films. Films of micrometer-scale thicknesses were prepared by overlaying a benzene solution droplet on a glass coverslip with a rectangular glass plate, followed by solvent evaporation under a nitrogen atmosphere. The microdomain alignment was quantitatively assessed from SMT data exhibiting the diffusional motions of individual sulforhodamine B fluorescent probes that preferentially partitioned into cylindrical PEO microdomains. Better overall microdomain orientation along the flow direction was observed near the substrate interface in films prepared at a higher flow rate, suggesting that the microdomain alignment was primarily induced by shear flow. The SMT data also revealed the presence of micrometer-scale grains consisting of highly ordered microdomains with coherent orientation. The results of this study provide insights into shear-based preparation of aligned cylindrical microdomains in block copolymer films from solutions within confined spaces.

  17. Investigating Conversational Dynamics: Interactive Alignment, Interpersonal Synergy, and Collective Task Performance

    Science.gov (United States)

    Fusaroli, Riccardo; Tylén, Kristian

    2016-01-01

    This study investigates interpersonal processes underlying dialog by comparing two approaches, "interactive alignment" and "interpersonal synergy", and assesses how they predict collective performance in a joint task. While the interactive alignment approach highlights imitative patterns between interlocutors, the synergy…

  18. Controllable 3D architectures of aligned carbon nanotube arrays by multi-step processes

    Science.gov (United States)

    Huang, Shaoming

    2003-06-01

    An effective way to fabricate large area three-dimensional (3D) aligned CNTs pattern based on pyrolysis of iron(II) phthalocyanine (FePc) by two-step processes is reported. The controllable generation of different lengths and selective growth of the aligned CNT arrays on metal-patterned (e.g., Ag and Au) substrate are the bases for generating such 3D aligned CNTs architectures. By controlling experimental conditions 3D aligned CNT arrays with different lengths/densities and morphologies/structures as well as multi-layered architectures can be fabricated in large scale by multi-step pyrolysis of FePc. These 3D architectures could have interesting properties and be applied for developing novel nanotube-based devices.

  19. Improving scanner wafer alignment performance by target optimization

    Science.gov (United States)

    Leray, Philippe; Jehoul, Christiane; Socha, Robert; Menchtchikov, Boris; Raghunathan, Sudhar; Kent, Eric; Schoonewelle, Hielke; Tinnemans, Patrick; Tuffy, Paul; Belen, Jun; Wise, Rich

    2016-03-01

    In the process nodes of 10nm and below, the patterning complexity along with the processing and materials required has resulted in a need to optimize alignment targets in order to achieve the required precision, accuracy and throughput performance. Recent industry publications on the metrology target optimization process have shown a move from the expensive and time consuming empirical methodologies, towards a faster computational approach. ASML's Design for Control (D4C) application, which is currently used to optimize YieldStar diffraction based overlay (DBO) metrology targets, has been extended to support the optimization of scanner wafer alignment targets. This allows the necessary process information and design methodology, used for DBO target designs, to be leveraged for the optimization of alignment targets. In this paper, we show how we applied this computational approach to wafer alignment target design. We verify the correlation between predictions and measurements for the key alignment performance metrics and finally show the potential alignment and overlay performance improvements that an optimized alignment target could achieve.

  20. High-order nonuniformly correlated beams

    Science.gov (United States)

    Wu, Dan; Wang, Fei; Cai, Yangjian

    2018-02-01

    We have introduced a class of partially coherent beams with spatially varying correlations named high-order nonuniformly correlated (HNUC) beams, as an extension of conventional nonuniformly correlated (NUC) beams. Such beams bring a new parameter (mode order) which is used to tailor the spatial coherence properties. The behavior of the spectral density of the HNUC beams on propagation has been investigated through numerical examples with the help of discrete model decomposition and fast Fourier transform (FFT) algorithm. Our results reveal that by selecting the mode order appropriately, the more sharpened intensity maxima can be achieved at a certain propagation distance compared to that of the NUC beams, and the lateral shift of the intensity maxima on propagation is closed related to the mode order. Furthermore, analytical expressions for the r.m.s width and the propagation factor of the HNUC beams on free-space propagation are derived by means of Wigner distribution function. The influence of initial beam parameters on the evolution of the r.m.s width and the propagation factor, and the relation between the r.m.s width and the occurring of the sharpened intensity maxima on propagation have been studied and discussed in detail.

  1. Assessment indices for uniform and non-uniform thermal environments

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    Different assessment indices for thermal environments were compared and selected for proper assessment of indoor thermal environments.30 subjects reported their overall thermal sensation,thermal comfort,and thermal acceptability in uniform and non-uniform conditions.The results show that these three assessment indices provide equivalent evaluations in uniform environments.However,overall thermal sensation differs from the other two indices and cannot be used as a proper index for the evaluation of non-uniform environments.The relationship between the percentage and the mean vote for each index is established.

  2. On natural frequencies of non-uniform beams modulated by finite periodic cells

    International Nuclear Information System (INIS)

    Xu, Yanlong; Zhou, Xiaoling; Wang, Wei; Wang, Longqi; Peng, Fujun; Li, Bin

    2016-01-01

    It is well known that an infinite periodic beam can support flexural wave band gaps. However, in real applications, the number of the periodic cells is always limited. If a uniform beam is replaced by a non-uniform beam with finite periodicity, the vibration changes are vital by mysterious. This paper employs the transfer matrix method (TMM) to study the natural frequencies of the non-uniform beams with modulation by finite periodic cells. The effects of the amounts, cross section ratios, and arrangement forms of the periodic cells on the natural frequencies are explored. The relationship between the natural frequencies of the non-uniform beams with finite periodicity and the band gap boundaries of the corresponding infinite periodic beam is also investigated. Numerical results and conclusions obtained here are favorable for designing beams with good vibration control ability. - Highlights: • The transfer matrix method to study the natural frequencies of the finite periodic non-uniform beams is derived. • The transfer matrix method to study the band gaps of the infinite periodic non-uniform beams is derived. • The effects of the periodic cells on the natural frequencies are explored. • The relationships of the natural frequencies and band gap boundaries are investigated.

  3. On natural frequencies of non-uniform beams modulated by finite periodic cells

    Energy Technology Data Exchange (ETDEWEB)

    Xu, Yanlong, E-mail: xuyanlong@nwpu.edu.cn [School of Aeronautics, Northwestern Polytechnical University, Xi' an 710072, Shaanxi (China); Zhou, Xiaoling [Shanghai Institute of Aerospace System Engineering, Shanghai 201109 (China); Wang, Wei [School of Aeronautics, Northwestern Polytechnical University, Xi' an 710072, Shaanxi (China); Wang, Longqi [School of Civil & Environmental Engineering, Nanyang Technological University, 50 Nanyang Avenue, Singapore 639798 (Singapore); Peng, Fujun [Shanghai Institute of Aerospace System Engineering, Shanghai 201109 (China); Li, Bin [School of Aeronautics, Northwestern Polytechnical University, Xi' an 710072, Shaanxi (China)

    2016-09-23

    It is well known that an infinite periodic beam can support flexural wave band gaps. However, in real applications, the number of the periodic cells is always limited. If a uniform beam is replaced by a non-uniform beam with finite periodicity, the vibration changes are vital by mysterious. This paper employs the transfer matrix method (TMM) to study the natural frequencies of the non-uniform beams with modulation by finite periodic cells. The effects of the amounts, cross section ratios, and arrangement forms of the periodic cells on the natural frequencies are explored. The relationship between the natural frequencies of the non-uniform beams with finite periodicity and the band gap boundaries of the corresponding infinite periodic beam is also investigated. Numerical results and conclusions obtained here are favorable for designing beams with good vibration control ability. - Highlights: • The transfer matrix method to study the natural frequencies of the finite periodic non-uniform beams is derived. • The transfer matrix method to study the band gaps of the infinite periodic non-uniform beams is derived. • The effects of the periodic cells on the natural frequencies are explored. • The relationships of the natural frequencies and band gap boundaries are investigated.

  4. Capacitated Vehicle Routing with Nonuniform Speeds

    DEFF Research Database (Denmark)

    Gørtz, Inge Li; Molinaro, Marco; Nagarajan, Viswanath

    2016-01-01

    is the distance traveled divided by its speed.Our algorithm relies on a new approximate minimum spanning tree construction called Level-Prim, which is related to but different from Light Approximate Shortest-path Trees. We also extend the widely used tour-splitting technique to nonuniform speeds, using ideas from...

  5. Nonuniform charging effects on ion drag force in drifting dusty plasmas

    International Nuclear Information System (INIS)

    Chang, Dong-Man; Chang, Won-Seok; Jung, Young-Dae

    2006-01-01

    The nonuniform polarization charging effects on the ion drag force are investigated in drifting dusty plasmas. The ion drag force due to the ion-dust grain interaction is obtained as a function of the dust charge, ion charge, plasma temperature, Mach number, Debye length, and collision energy. The result shows that the nonuniform charging effects enhance the momentum transfer cross section as well as the ion drag force. It is found that the momentum transfer cross section and the ion drag force including nonuniform polarization charging effects increase with increasing the Mach number and also the ion drag force increases with increasing the temperature. In addition, it is found that the ion drag force is slightly decreasing with an increase of the Debye length

  6. ClustalXeed: a GUI-based grid computation version for high performance and terabyte size multiple sequence alignment

    Directory of Open Access Journals (Sweden)

    Kim Taeho

    2010-09-01

    Full Text Available Abstract Background There is an increasing demand to assemble and align large-scale biological sequence data sets. The commonly used multiple sequence alignment programs are still limited in their ability to handle very large amounts of sequences because the system lacks a scalable high-performance computing (HPC environment with a greatly extended data storage capacity. Results We designed ClustalXeed, a software system for multiple sequence alignment with incremental improvements over previous versions of the ClustalX and ClustalW-MPI software. The primary advantage of ClustalXeed over other multiple sequence alignment software is its ability to align a large family of protein or nucleic acid sequences. To solve the conventional memory-dependency problem, ClustalXeed uses both physical random access memory (RAM and a distributed file-allocation system for distance matrix construction and pair-align computation. The computation efficiency of disk-storage system was markedly improved by implementing an efficient load-balancing algorithm, called "idle node-seeking task algorithm" (INSTA. The new editing option and the graphical user interface (GUI provide ready access to a parallel-computing environment for users who seek fast and easy alignment of large DNA and protein sequence sets. Conclusions ClustalXeed can now compute a large volume of biological sequence data sets, which were not tractable in any other parallel or single MSA program. The main developments include: 1 the ability to tackle larger sequence alignment problems than possible with previous systems through markedly improved storage-handling capabilities. 2 Implementing an efficient task load-balancing algorithm, INSTA, which improves overall processing times for multiple sequence alignment with input sequences of non-uniform length. 3 Support for both single PC and distributed cluster systems.

  7. Allowance for influence of gravity field nonuniformity

    Science.gov (United States)

    Tsysar, A. P.

    1987-03-01

    The constants of a quartz-metal pendulum used in higher-order gravimetric networks have been determined and a formula has been derived for the total correction for gravity field nonuniformity measurements made with the pendulum. Nomograms were constructed on the basis of these formulas and are used in introducing corrections into pendulum measurements. A table was prepared giving the components of the correction for some values of the derivatives of gravity potential from surrounding masses. Errors can be caused by building walls, the pedestal on which the instrument sits and other factors, and these must be taken into account since they increase the normal gravity gradient. After introducing these correction components for the nonuniform gravity field, the gravity field at the measurement point is related to the instrument point coinciding with the middle of the pendulum knife blade.

  8. Testing for Nonuniform Differential Item Functioning with Multiple Indicator Multiple Cause Models

    Science.gov (United States)

    Woods, Carol M.; Grimm, Kevin J.

    2011-01-01

    In extant literature, multiple indicator multiple cause (MIMIC) models have been presented for identifying items that display uniform differential item functioning (DIF) only, not nonuniform DIF. This article addresses, for apparently the first time, the use of MIMIC models for testing both uniform and nonuniform DIF with categorical indicators. A…

  9. Intradomain Textures in Block Copolymers: Multizone Alignment and Biaxiality

    Science.gov (United States)

    Prasad, Ishan; Seo, Youngmi; Hall, Lisa M.; Grason, Gregory M.

    2017-06-01

    Block copolymer (BCP) melt assembly has been studied for decades, focusing largely on self-organized spatial patterns of periodically ordered segment density. Here, we demonstrate that underlying the well-known composition profiles (i.e., ordered lamella, cylinders, spheres, and networks) are generic and heterogeneous patterns of segment orientation that couple strongly to morphology, even in the absence of specific factors that promote intra or interchain segment alignment. We employ both self-consistent field theory and coarse-grained simulation methods to measure polar and nematic order parameters of segments in a freely jointed chain model of diblock melts. We show that BCP morphologies have a multizone texture, with segments predominantly aligned normal and parallel to interdomain interfaces in the respective brush and interfacial regions of the microdomain. Further, morphologies with anisotropically curved interfaces (i.e., cylinders and networks) exhibit biaxial order that is aligned to the principal curvature axes of the interface.

  10. Gas dynamic improvement of the axial compressor design for reduction of the flow non-uniformity level

    Science.gov (United States)

    Matveev, V. N.; Baturin, O. V.; Kolmakova, D. A.; Popov, G. M.

    2017-01-01

    Circumferential nonuniformity of gas flow is one of the main problems in the gas turbine engine. Usually, the flow circumferential nonuniformity appears near the annular frame located in the flow passage of the engine. The presence of circumferential nonuniformity leads to the increased dynamic stresses in the blade rows and the blade damage. The goal of this research was to find the ways of the flow non-uniformity reduction, which would not require a fundamental changing of the engine design. A new method for reducing the circumferential nonuniformity of the gas flow was proposed that allows the prediction of the pressure peak values of the rotor blades without computationally expensive CFD calculations.

  11. Microwave interaction with nonuniform hydrogen gas in carbon nanotubes

    International Nuclear Information System (INIS)

    Babaei, S.; Babaei, Sh.

    2009-01-01

    In this paper we study the reflection, absorption, and transmission of microwave from nonuniform hydrogen gas in carbon nanotubes, grown by iron-catalyzed high-pressure carbon monoxide disproportionate (HiPco) process. A discussion on the effect of various hydrogen gas parameters on the reflected power, absorbed power, and transmitted power is presented. The nonuniform hydrogen gas slab is modeled by a series of subslabs. The overall number density profile across the whole slab follows a parabolic function. The total reflected, absorbed, and transmitted powers are then deduced and their functional dependence on the number density, collision frequency, and angle of propagation is studied

  12. Weighted backprojection implemented with a non-uniform attenuation map for improved SPECT quantitation

    International Nuclear Information System (INIS)

    Manglos, S.H.; Jaszczak, R.J.; Floyd, C.E.

    1988-01-01

    A method is developed to improve quantitation in SPECT imaging by using an attenuation compensation method which includes the correct non-uniform attenuation spatial distribution (''map''). The method is based on the technique of weighted back projection, previously developed for uniform attenuation. The method is tested by imaging a non-uniform phantom, reconstructing with the known attenuation map, and quantitatively comparing the resultant image with the known activity distribution. Reconstructed image profiles are dramatically improved in comparison to reconstructions without compensation or with an assumed uniform attenuation map. Contrast measurements further quantify the improvement. Line spread function distortions seen previously in non-uniform geometries are essentially eliminated by the method. Therefore, the method appears to be appropriate for these geometries, if the non-uniform map can be determined. Some additional image distortions introduced by the compensation method are noted and will require further study

  13. The Effects of Nonuniform Illumination on the Electrical Performance of a Single Conventional Photovoltaic Cell

    Directory of Open Access Journals (Sweden)

    Damasen Ikwaba Paul

    2015-01-01

    Full Text Available Photovoltaic (PV concentrators are a promising approach for lowering PV electricity costs in the near future. However, most of the concentrators that are currently used for PV applications yield nonuniform flux profiles on the surface of a PV module which in turn reduces its electrical performance if the cells are serially connected. One way of overcoming this effect is the use of PV modules with isolated cells so that each cell generates current that is proportional to the energy flux absorbed. However, there are some cases where nonuniform illumination also exists in a single cell in an isolated cells PV module. This paper systematically studied the effect of nonuniform illumination on various cell performance parameters of a single monocrystalline standard PV cell at low and medium energy concentration ratios. Furthermore, the effect of orientation, size, and geometrical shapes of nonuniform illumination was also investigated. It was found that the effect of nonuniform illumination on various PV cell performance parameters of a single standard PV cell becomes noticeable at medium energy flux concentration whilst the location, size, and geometrical shape of nonuniform illumination have no effect on the performance parameters of the cell.

  14. Radar Doppler Processing with Nonuniform Sampling.

    Energy Technology Data Exchange (ETDEWEB)

    Doerry, Armin W. [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States)

    2017-07-01

    Conventional signal processing to estimate radar Doppler frequency often assumes uniform pulse/sample spacing. This is for the convenience of t he processing. More recent performance enhancements in processor capability allow optimally processing nonuniform pulse/sample spacing, thereby overcoming some of the baggage that attends uniform sampling, such as Doppler ambiguity and SNR losses due to sidelobe control measures.

  15. Experimental and theoretical studies of the effects of nonuniformities in equilibrium MHD generators

    International Nuclear Information System (INIS)

    Rosenbaum, M.; Shamma, S.E.; Louis, J.F.

    1980-01-01

    An experimental study of the effects of thermal and velocity nonuniformities is performed in an equilibrium plasma for a range of Hall parameters. An electrodeless MHD disk generator with radial flow is chosen as the ideal geometry for these experiments. By introducing equally spaced cold blades in the flow, it is possible to create well defined two-dimensional wake nonuniformities with strong variations of the plasma properties in the direction normal to the magnetic field and the flow. This type of nonuniformity is predicted to provide the strongest reduction of Hall coefficient and effective conductivity for high values of Hall parameter. This degradation is controlled by both the level of nonuniformities and the value of the ideal Hall parameter. The former is dependent upon the number of blades (root mean square deviation of the conductivity), and the latter is dependent upon the values of the magnetic field intensities. The results provide basic quantitative information about the effects of conductivity and velocity nonuniformities on the performance of equilibrium MHD generators over a wide range of Hall coefficients, between 2 and 7. Reduction formulae are established between the effective and ideal Hall parameters for different levels of nonuniformities intensities. Theoretical predictions are derived from a detailed two-dimensional electrodynamic analysis and a simplified engineering model based on a generalization of Rosa's layer model. These experiments validate the analytical studies and support the use of the theoretical layer models in describing the effect of boundary layers on the performance of linear generators

  16. Fluxon dynamics in long Josephson junctions in the presence of a temperature gradient or spatial nonuniformity

    DEFF Research Database (Denmark)

    Krasnov, V.M.; Oboznov, V.A.; Pedersen, Niels Falsig

    1997-01-01

    Fluxon dynamics in nonuniform Josephson junctions was studied both experimentally and theoretically. Two types of nonuniform junctions were considered: the first type had a nonuniform spatial distribution of critical and bias currents and the second had a temperature gradient applied along...... the junction. An analytical expression for the I-V curve in the presence of a temperature gradient or spatial nonuniformity was derived. It was shown that there is no static thermomagnetic Nernst effect due to Josephson fluxon motion despite the existence of a force pushing fluxons in the direction of smaller...

  17. CATCHprofiles: Clustering and Alignment Tool for ChIP Profiles

    DEFF Research Database (Denmark)

    G. G. Nielsen, Fiona; Galschiøt Markus, Kasper; Møllegaard Friborg, Rune

    2012-01-01

    IP-profiling data and detect potentially meaningful patterns, the areas of enrichment must be aligned and clustered, which is an algorithmically and computationally challenging task. We have developed CATCHprofiles, a novel tool for exhaustive pattern detection in ChIP profiling data. CATCHprofiles is built upon...... a computationally efficient implementation for the exhaustive alignment and hierarchical clustering of ChIP profiling data. The tool features a graphical interface for examination and browsing of the clustering results. CATCHprofiles requires no prior knowledge about functional sites, detects known binding patterns...... it an invaluable tool for explorative research based on ChIP profiling data. CATCHprofiles and the CATCH algorithm run on all platforms and is available for free through the CATCH website: http://catch.cmbi.ru.nl/. User support is available by subscribing to the mailing list catch-users@bioinformatics.org....

  18. Radio-frequency properties of stacked long Josephson junctions with nonuniform bias current distribution

    DEFF Research Database (Denmark)

    Filatrella, G; Pedersen, Niels Falsig

    1999-01-01

    We have numerically investigated the behavior of stacks of long Josephson junctions considering a nonuniform bias profile. In the presence of a microwave field the nonuniform bias, which favors the formation of fluxons, can give rise to a change of the sequence of radio-frequency induced steps...

  19. Galactic cosmic ray gradients, field-aligned and latitudinal, among Voyagers 1/2 and IMP-8

    International Nuclear Information System (INIS)

    Roelof, E.C.; Decker, R.B.; Krimigis, S.M.; Venkatesan, D.; Lazarus, A.J.

    1982-01-01

    The tandem Earth-Jupiter trajectories of the Voyager 1/2 spacecraft, combined with baseline measurements from the earth-orbiting IMP-7/8 spacecraft, provide the first opportunity for unambiguously separating latitude from radial or field-aligned effects in galactic cosmic ray gradients. Anti-coincidence solid-state detectors on the Voyager 1/2 LECP experiment measure nucleons > or approximately 20 MeV/nuc with large (28 cm 2 ) omnidirectional geometry factors. Anti-coincidence scintillators on the IMP-7/8 CPME with omnidirectional geometry factors comparable to those on Voyager measure nucleons > or approximately 35 MeV/nuc. Because the Voyagers are well-connected via the interplanetary magnetic field (IMF) to the near-Earth vicinity throughout their transit from 1-5 AU (September 1977 - February 1979), we obtained the first direct measurement of field-aligned gradients, i.e., those that do not depend upon ''corotation'' from one spacecraft to another over many days. Another new result is the unambiguous identification of nonuniform latitudinal gradients approximately 2-5% degree -1 in structures lasting 10-30 days. There is additional evidence for somewhat smaller latitudinal gradients, north to south and probably mixed with small field-aligned gradients -1 , which persist for several solar rotations

  20. Instruction sequences and non-uniform complexity theory

    NARCIS (Netherlands)

    Bergstra, J.A.; Middelburg, C.A.

    2008-01-01

    We develop theory concerning non-uniform complexity in a setting in which the notion of single-pass instruction sequence considered in program algebra is the central notion. We define counterparts of the complexity classes P/poly and NP/poly and formulate a counterpart of the complexity theoretic

  1. Derivation of nonlinear wave equations for ultrasound beam in nonuniform bubbly liquids

    Science.gov (United States)

    Kanagawa, Tetsuya; Yano, Takeru; Kawahara, Junya; Kobayashi, Kazumichi; Watanabe, Masao; Fujikawa, Shigeo

    2012-09-01

    Weakly nonlinear propagation of diffracted ultrasound beams in a nonuniform bubbly liquid is theoretically studied based on the method of multiple scales with the set of scaling relations of some physical parameters. It is assumed that the spatial distribution of the number density of bubbles in an initial state at rest is a slowly varying function of space coordinates and the amplitude of its variation is small compared with a mean number density. As a result, a Khokhlov-Zabolotskaya-Kuznetsov (KZK) equation with dispersion and nonuniform effects for a low frequency case and a nonlinear Schrödinger (NLS) equation with dissipation, diffraction, and nonuniform effects for a high frequency case, are derived from the basic equations of bubbly flows.

  2. Casimir energy of a nonuniform string

    Science.gov (United States)

    Hadasz, L.; Lambiase, G.; Nesterenko, V. V.

    2000-07-01

    The Casimir energy of a nonuniform string built up from two pieces with different speeds of sound is calculated. A standard procedure of subtracting the energy of an infinite uniform string is applied, the subtraction being interpreted as the renormalization of the string tension. It is shown that in the case of a homogeneous string this method is completely equivalent to zeta renormalization.

  3. Outer region scaling using the freestream velocity for nonuniform open channel flow over gravel

    Science.gov (United States)

    Stewart, Robert L.; Fox, James F.

    2017-06-01

    The theoretical basis for outer region scaling using the freestream velocity for nonuniform open channel flows over gravel is derived and tested for the first time. Owing to the gradual expansion of the flow within the nonuniform case presented, it is hypothesized that the flow can be defined as an equilibrium turbulent boundary layer using the asymptotic invariance principle. The hypothesis is supported using similarity analysis to derive a solution, followed by further testing with experimental datasets. For the latter, 38 newly collected experimental velocity profiles across three nonuniform flows over gravel in a hydraulic flume are tested as are 43 velocity profiles previously published in seven peer-reviewed journal papers that focused on fluid mechanics of nonuniform open channel over gravel. The findings support the nonuniform flows as equilibrium defined by the asymptotic invariance principle, which is reflective of the consistency of the turbulent structure's form and function within the expanding flow. However, roughness impacts the flow structure when comparing across the published experimental datasets. As a secondary objective, we show how previously published mixed scales can be used to assist with freestream velocity scaling of the velocity deficit and thus empirically account for the roughness effects that extend into the outer region of the flow. One broader finding of this study is providing the theoretical context to relax the use of the elusive friction velocity when scaling nonuniform flows in gravel bed rivers; and instead to apply the freestream velocity. A second broader finding highlighted by our results is that scaling of nonuniform flow in gravel bed rivers is still not fully resolved theoretically since mixed scaling relies to some degree on empiricism. As researchers resolve the form and function of macroturbulence in the outer region, we hope to see the closing of this research gap.

  4. Aligning the unalignable: bacteriophage whole genome alignments.

    Science.gov (United States)

    Bérard, Sèverine; Chateau, Annie; Pompidor, Nicolas; Guertin, Paul; Bergeron, Anne; Swenson, Krister M

    2016-01-13

    In recent years, many studies focused on the description and comparison of large sets of related bacteriophage genomes. Due to the peculiar mosaic structure of these genomes, few informative approaches for comparing whole genomes exist: dot plots diagrams give a mostly qualitative assessment of the similarity/dissimilarity between two or more genomes, and clustering techniques are used to classify genomes. Multiple alignments are conspicuously absent from this scene. Indeed, whole genome aligners interpret lack of similarity between sequences as an indication of rearrangements, insertions, or losses. This behavior makes them ill-prepared to align bacteriophage genomes, where even closely related strains can accomplish the same biological function with highly dissimilar sequences. In this paper, we propose a multiple alignment strategy that exploits functional collinearity shared by related strains of bacteriophages, and uses partial orders to capture mosaicism of sets of genomes. As classical alignments do, the computed alignments can be used to predict that genes have the same biological function, even in the absence of detectable similarity. The Alpha aligner implements these ideas in visual interactive displays, and is used to compute several examples of alignments of Staphylococcus aureus and Mycobacterium bacteriophages, involving up to 29 genomes. Using these datasets, we prove that Alpha alignments are at least as good as those computed by standard aligners. Comparison with the progressive Mauve aligner - which implements a partial order strategy, but whose alignments are linearized - shows a greatly improved interactive graphic display, while avoiding misalignments. Multiple alignments of whole bacteriophage genomes work, and will become an important conceptual and visual tool in comparative genomics of sets of related strains. A python implementation of Alpha, along with installation instructions for Ubuntu and OSX, is available on bitbucket (https://bitbucket.org/thekswenson/alpha).

  5. Enabling complex nanoscale pattern customization using directed self-assembly.

    Science.gov (United States)

    Doerk, Gregory S; Cheng, Joy Y; Singh, Gurpreet; Rettner, Charles T; Pitera, Jed W; Balakrishnan, Srinivasan; Arellano, Noel; Sanders, Daniel P

    2014-12-16

    Block copolymer directed self-assembly is an attractive method to fabricate highly uniform nanoscale features for various technological applications, but the dense periodicity of block copolymer features limits the complexity of the resulting patterns and their potential utility. Therefore, customizability of nanoscale patterns has been a long-standing goal for using directed self-assembly in device fabrication. Here we show that a hybrid organic/inorganic chemical pattern serves as a guiding pattern for self-assembly as well as a self-aligned mask for pattern customization through cotransfer of aligned block copolymer features and an inorganic prepattern. As informed by a phenomenological model, deliberate process engineering is implemented to maintain global alignment of block copolymer features over arbitrarily shaped, 'masking' features incorporated into the chemical patterns. These hybrid chemical patterns with embedded customization information enable deterministic, complex two-dimensional nanoscale pattern customization through directed self-assembly.

  6. POSSOL, 2-D Poisson Equation Solver for Nonuniform Grid

    International Nuclear Information System (INIS)

    Orvis, W.J.

    1988-01-01

    1 - Description of program or function: POSSOL is a two-dimensional Poisson equation solver for problems with arbitrary non-uniform gridding in Cartesian coordinates. It is an adaptation of the uniform grid PWSCRT routine developed by Schwarztrauber and Sweet at the National Center for Atmospheric Research (NCAR). 2 - Method of solution: POSSOL will solve the Helmholtz equation on an arbitrary, non-uniform grid on a rectangular domain allowing only one type of boundary condition on any one side. It can also be used to handle more than one type of boundary condition on a side by means of a capacitance matrix technique. There are three types of boundary conditions that can be applied: fixed, derivative, or periodic

  7. Information Compression, Multiple Alignment, and the Representation and Processing of Knowledge in the Brain.

    Science.gov (United States)

    Wolff, J Gerard

    2016-01-01

    The SP theory of intelligence , with its realization in the SP computer model , aims to simplify and integrate observations and concepts across artificial intelligence, mainstream computing, mathematics, and human perception and cognition, with information compression as a unifying theme. This paper describes how abstract structures and processes in the theory may be realized in terms of neurons, their interconnections, and the transmission of signals between neurons. This part of the SP theory- SP-neural -is a tentative and partial model for the representation and processing of knowledge in the brain. Empirical support for the SP theory-outlined in the paper-provides indirect support for SP-neural. In the abstract part of the SP theory (SP-abstract), all kinds of knowledge are represented with patterns , where a pattern is an array of atomic symbols in one or two dimensions. In SP-neural, the concept of a "pattern" is realized as an array of neurons called a pattern assembly , similar to Hebb's concept of a "cell assembly" but with important differences. Central to the processing of information in SP-abstract is information compression via the matching and unification of patterns (ICMUP) and, more specifically, information compression via the powerful concept of multiple alignment , borrowed and adapted from bioinformatics. Processes such as pattern recognition, reasoning and problem solving are achieved via the building of multiple alignments, while unsupervised learning is achieved by creating patterns from sensory information and also by creating patterns from multiple alignments in which there is a partial match between one pattern and another. It is envisaged that, in SP-neural, short-lived neural structures equivalent to multiple alignments will be created via an inter-play of excitatory and inhibitory neural signals. It is also envisaged that unsupervised learning will be achieved by the creation of pattern assemblies from sensory information and from the

  8. Computer Simulation of Nonuniform MTLs via Implicit Wendroff and State-Variable Methods

    Directory of Open Access Journals (Sweden)

    L. Brancik

    2011-04-01

    Full Text Available The paper deals with techniques for a computer simulation of nonuniform multiconductor transmission lines (MTLs based on the implicit Wendroff and the statevariable methods. The techniques fall into a class of finitedifference time-domain (FDTD methods useful to solve various electromagnetic systems. Their basic variants are extended and modified to enable solving both voltage and current distributions along nonuniform MTL’s wires and their sensitivities with respect to lumped and distributed parameters. An experimental error analysis is performed based on the Thomson cable whose analytical solutions are known, and some examples of simulation of both uniform and nonuniform MTLs are presented. Based on the Matlab language programme, CPU times are analyzed to compare efficiency of the methods. Some results for nonlinear MTLs simulation are presented as well.

  9. Circumferential nonuniformity of cladding radiation swelling of fast reactor peripheral fuel elements

    International Nuclear Information System (INIS)

    Reutov, V.F.; Farkhutdinov, K.G.

    1977-01-01

    The results are presented of the investigation into the perimeter radiation swelling of Kh18N10T stainless steel cladding in different cross sections of a peripheral fuel element of the BR-5 reactor. The fluence on the cladding is 1.8-2.9 x 10 22 fast neutr/cm 2 , the operating temperatures in different parts of the fuel element being 430 deg to 585 deg C. There has been observed circumferential non-uniformity of the distribution, concentration, and of the total volume of radiation cavities, which is due to temperature non-uniformity along the cladding perimeter. It is shown that such non-uniformity of radiation swelling of the cladding material may result in bending of the peripheral fuel element with regard to the fuel assembly sheath walls

  10. Photocathode non-uniformity contribution to the energy resolution of scintillators

    International Nuclear Information System (INIS)

    Mottaghian, M.; Koohi-Fayegh, R.; Ghal-Eh, N.; Etaati, G. R.

    2010-01-01

    This paper introduces the basics of the light transport simulation in scintillators and the wavelength-dependencies in the process. The non-uniformity measurement of the photocathode surface is undertaken, showing that for the photocathode used in this study the quantum efficiency falls to about 4% of its maximum value, especially in areas far from the centre. The wavelength-and position-dependent quantum efficiency is implemented in the Monte Carlo light transport code, showing that, the contribution of the photocathode non-uniformity to the energy resolution is estimated to be around 18%, when all position-and wavelength-dependencies are included. (authors)

  11. ELECTRONIC CIRCUIT BOARDS NON-UNIFORM COOLING SYSTEM MODEL

    Directory of Open Access Journals (Sweden)

    D. V. Yevdulov

    2016-01-01

    Full Text Available Abstract. The paper considers a mathematical model of non-uniform cooling of electronic circuit boards. The block diagram of the system implementing this approach, the method of calculation of the electronic board temperature field, as well as the principle of its thermal performance optimizing are presented. In the considered scheme the main heat elimination from electronic board is produced by the radiator system, and additional cooling of the most temperature-sensitive components is produced by thermoelectric batteries. Are given the two-dimensional temperature fields of the electronic board during its uniform and non-uniform cooling, is carried out their comparison. As follows from the calculations results, when using a uniform overall cooling of electronic unit there is a waste of energy for the cooling 0f electronic board parts which temperature is within acceptable temperature range without the cooling system. This approach leads to the increase in the cooling capacity of used thermoelectric batteries in comparison with the desired values. This largely reduces the efficiency of heat elimination system. The use for electronic boards cooling of non-uniform local heat elimination removes this disadvantage. The obtained dependences show that in this case, the energy required to create a given temperature is smaller than when using a common uniform cooling. In this approach the temperature field of the electronic board is more uniform and the cooling is more efficient. 

  12. Three wavelength optical alignment of the Nova laser

    International Nuclear Information System (INIS)

    Swift, C.D.; Bliss, E.S.; Jones, W.A.; Seppala, L.G.

    1983-01-01

    The Nova laser, presently under construction at Lawrence Livermore National Laboratory, will be capable of delivering more than 100 kJ of focused energy to an Inertial Confinement Fusion (ICF) target. Operation at the fundamental wavelength of the laser (1.05 μm) and at the second and third harmonic will be possible. This paper will discuss the optical alignment systems and techniques being implemented to align the laser output to the target at these wavelengths prior to each target irradiation. When experiments require conversion of the laser light to wavelengths of 0.53 μm and 0.35 μm prior to target irradiation, this will be accomplished in harmonic conversion crystals located at the beam entrances to the target chamber. The harmonic alignment system will be capable of introducing colinear alignment beams of all three wavelengths into the laser chains at the final spatial filter. The alignment beam at 1.05 μm will be about three cm in diameter and intense enough to align the conversion crystals. Beams at 0.53 μm and 0.35 μm will be expanded by the spatial filter to full aperture (74 cm) and used to illuminate the target and other alignment aids at the target chamber focus. This harmonic illumination system will include viewing capability as well. A final alignment sensor will be located at the target chamber. It will view images of the chamber focal plane at all three wavelengths. In this way, each beam can be aligned at the desired wavelength to produce the focal pattern required for each target irradiation. The design of the major components in the harmonic alignment system will be described, and a typical alignment sequence for alignment to a target will be presented

  13. Non-uniformity measurements of PbWO4 crystals

    International Nuclear Information System (INIS)

    Depasse, P.; Ernenwein, J.P.; Ille, B.; Martin, F.; Rosset, C.; Zach, F.

    1998-11-01

    Two independent methods have been used to measure the longitudinal non-uniformity scintillation response of 3 different (23-cm long) PbWO 4 crystals. The first one is the classical 60 Co source method. The source is collimated along the crystal, each 1,5-cm, and the scintillation signal is measured with a photomultiplier (a hybrid photomultiplier in our case). The second one is the use of cosmic particles (Minimum Ionizing Particles). A cosmic bench allows reconstructing the track of the MIP's and thus the energy deposit with the help of a full GEANT simulation of the setup. Variations of E along the crystal artificially cut in 1,5-cm divisions, leads to determine the non-uniformity. The conclusion is that both methods agree quite well. Furthermore, a good estimation of crystal light yield can be obtained. (author)

  14. Effect of loading pattern on longitudinal bowing in flexible roll forming

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Jae Hyun; Woo, Young Yun; Hwang, Tae Woo; Han, Sang Wook; Moon, Young Hoon [School of Mechanical Engineering, Engineering Research Center for Net Shape and Die Manufacturing, Pusan National University,Busan (Korea, Republic of)

    2016-12-15

    The flexible roll forming process can be used to fabricate products with a variable cross-section profile in the longitudinal direction. Transversal nonuniformity of the longitudinal strain is one of the fundamental characteristics of blank deformation in flexible roll forming. Longitudinal bowing is a shape defect caused by transversal nonuniformity of the longitudinal strain. In this study, loading patterns in flexible roll forming are investigated in order to reduce the longitudinal bowing in a roll-formed blank. To analyze the effects of loading patterns on longitudinal bowing, two different forming schedules are implemented. In schedule 1, loading patterns with different bending angle increments are designed under fixed initial and final bending angles. In schedule 2, loading patterns with different initial bending angles under the fixed final bending angle are designed. Our results show that the bowing heights are significantly affected by the loading patterns. The bowing susceptibilities vary with blank shape such as trapezoid, convex, and concave shapes. In addition to the peak longitudinal strain at the respective roll stands, the cumulative longitudinal strain from the initial to final stands is shown to be a reliable index in predicting the tendency of longitudinal bowing.

  15. A poloidal non-uniformity of the collisionless parallel current in a tokamak plasma

    Energy Technology Data Exchange (ETDEWEB)

    Romannikov, A.; Fenzi-Bonizec, C

    2005-07-01

    The collisionless distortion of the ion (electron) distribution function at certain points on a magnetic surface is studied in the framework of a simple model of a large aspect ratio tokamak plasma. The flow velocity driven by this distortion is calculated. The possibility of an additional non-uniform collisionless parallel current density on a magnetic surface, other than the known neo-classical non-uniformity is shown. The difference between the parallel current density on the low and high field side of a magnetic surface is close to the neoclassical bootstrap current density. The first Tore-Supra experimental test indicates the possibility of the poloidal non-uniformity of the parallel current density. (authors)

  16. Emittance growth caused by nonuniform charge distribution of bunched beam in linac

    International Nuclear Information System (INIS)

    Chen Yinbao; Zhang Zhenhai

    1993-09-01

    The nonlinear space charge effect of bunched beam in linac is one of the important reasons that induces the emittance growth because of the conversion of the field energy to kinetic energy. The authors have worked out the internal field energies associated with some nonuniform space change distributions of a bunched beam, such as Gaussian distribution, waterbag distribution and parabolic distribution. And the emittance growths caused by these nonuniformities are obtained

  17. Effects of non-uniform core flow on peak cladding temperature: MOXY/SCORE sensitivity calculations

    Energy Technology Data Exchange (ETDEWEB)

    Chang, S.C.

    1979-08-15

    The MOXY/SCORE computer program is used to evaluate the potential effect on peak cladding temperature of selective cooling that may result from a nonuniform mass flux at the core boundaries during the blowdown phase of the LOFT L2-4 test. The results of this study indicate that the effect of the flow nonuniformity at the core boundaries will be neutralized by a strong radial flow redistribution in the neighborhood of core boundaries. The implication is that the flow nonuniformity at the core boundaries has no significant effect on the thermal-hydraulic behavior and cladding temperature at the hot plane.

  18. Effects of non-uniform core flow on peak cladding temperature: MOXY/SCORE sensitivity calculations

    International Nuclear Information System (INIS)

    Chang, S.C.

    1979-01-01

    The MOXY/SCORE computer program is used to evaluate the potential effect on peak cladding temperature of selective cooling that may result from a nonuniform mass flux at the core boundaries during the blowdown phase of the LOFT L2-4 test. The results of this study indicate that the effect of the flow nonuniformity at the core boundaries will be neutralized by a strong radial flow redistribution in the neighborhood of core boundaries. The implication is that the flow nonuniformity at the core boundaries has no significant effect on the thermal-hydraulic behavior and cladding temperature at the hot plane

  19. Reduction of gas flow nonuniformity in gas turbine engines by means of gas-dynamic methods

    Science.gov (United States)

    Matveev, V.; Baturin, O.; Kolmakova, D.; Popov, G.

    2017-08-01

    Gas flow nonuniformity is one of the main sources of rotor blade vibrations in the gas turbine engines. Usually, the flow circumferential nonuniformity occurs near the annular frames, located in the flow channel of the engine. This leads to the increased dynamic stresses in blades and as a consequence to the blade damage. The goal of the research was to find an acceptable method of reducing the level of gas flow nonuniformity as the source of dynamic stresses in the rotor blades. Two different methods were investigated during this research. Thus, this study gives the ideas about methods of improving the flow structure in gas turbine engine. On the basis of existing conditions (under development or existing engine) it allows the selection of the most suitable method for reducing gas flow nonuniformity.

  20. Advanced GF(32) nonbinary LDPC coded modulation with non-uniform 9-QAM outperforming star 8-QAM.

    Science.gov (United States)

    Liu, Tao; Lin, Changyu; Djordjevic, Ivan B

    2016-06-27

    In this paper, we first describe a 9-symbol non-uniform signaling scheme based on Huffman code, in which different symbols are transmitted with different probabilities. By using the Huffman procedure, prefix code is designed to approach the optimal performance. Then, we introduce an algorithm to determine the optimal signal constellation sets for our proposed non-uniform scheme with the criterion of maximizing constellation figure of merit (CFM). The proposed nonuniform polarization multiplexed signaling 9-QAM scheme has the same spectral efficiency as the conventional 8-QAM. Additionally, we propose a specially designed GF(32) nonbinary quasi-cyclic LDPC code for the coded modulation system based on the 9-QAM non-uniform scheme. Further, we study the efficiency of our proposed non-uniform 9-QAM, combined with nonbinary LDPC coding, and demonstrate by Monte Carlo simulation that the proposed GF(23) nonbinary LDPC coded 9-QAM scheme outperforms nonbinary LDPC coded uniform 8-QAM by at least 0.8dB.

  1. Wastewater diffusive dilution and sedimentation of the fine contaminated particles for nonuniform flow in open channels

    Directory of Open Access Journals (Sweden)

    Lyapin Anton

    2018-01-01

    Full Text Available The influence of non-uniformity on mass transfer processes in open channels have been investigated under the action of urbanization factors. The study is related to the urgent problem of environmental degradation of water objects in urbanized areas. It is known that the water quality in the water objects depends on the manner in which the contaminants spread how they mix with the river water and diluted by it. The main results of the study consist of recommendations to incorporate non-uniformity factor to the calculation of diffusion dilution of wastewater and prediction of river processes. So the effect of the flow non-uniformity on the diffusion model of pollutants dilution and diffusion coefficient have been investigated. Formulas for the concentration profiles calculating and the average concentration of fine particulate matter in nonuniform gradually varied flow were presented. The deposition length of suspended contaminants were received, based on the hydraulic resistance laws of nonuniform gradually varied flow.

  2. The Pierce diode with an external circuit: II, Non-uniform equilibria

    International Nuclear Information System (INIS)

    Lawson, W.S.

    1987-01-01

    The non-uniform (non-linear) equilibria of the classical (short circuit) Pierce diode and the extended (series RLC external circuit) Pierce diode are described theoretically, and explored via computer simulation. It is found that most equilibria are correctly predicted by theory, but that the continuous set of equilibria of the classical Pierce diode at α = 2π are not observed. The stability characteristics of the non-uniform equilibria are also worked out, and are consistent with the simulations. 8 refs., 22 figs., 3 tabs

  3. Linear Fresnel zone plate based two-state alignment system for 0.25 micron x-ray lithography

    International Nuclear Information System (INIS)

    Chen, G.

    1993-01-01

    X-ray lithography has proven to be a cost effective and promising technique for fabricating Integrated Circuits (ICs) with minimum feature sizes of less than 0.25 μm. Since IC fabrication is a multilevel process, to preserve the functionality of devices, circuit patterns printed at each lithography level must match existing patterns on the wafer with an accuracy of less than 1/3 ∼ 1/5 of the minimum feature size. An alignment system is used to position the mask relative to the wafer so that mask circuit patterns can be printed on the wafer at the designed position. As the minimum printed feature size shrinks, the overlay requirements of a lithography tool become more stringent. A stepper for 0.25 μm feature device fabrication requires an overlay accuracy of 0.075 μm, of which only 0.05 μm (mean + 3σ) is allocated to its alignment system. This thesis presents the development of a linear Fresnel zone late based two-state alignment (TSA) method for a 0.25 μm x-ray lithography tool. The authors first analyze the overlay requirement in a lithography process and the error allocation to the alignment system for a 0.25 μ feature x-ray lithography tool. They then describe the principle of the two-state alignment, its computer simulation and the optimal alignment mark design. They carried out an optical bench test for the one-axes alignment setup and experimentally evaluated the performance of the system. They developed a three-axes TSA system and integrated the system with the ES-3 x-ray beamline to construct the CXrL aligner, an experimental x-ray exposure system in CXrL. They measured the alignment accuracy of the exposure system to be better than 0.035 μm (3σ) on both metal and dielectric alignment mark substrates. They also studied the effect of processing coatings on the alignment signal with different wafer mark substrates. They successfully printed the 0.5 μm gate level patterns for the first NMOS test chip at CXrL

  4. Information Compression, Multiple Alignment, and the Representation and Processing of Knowledge in the Brain

    Directory of Open Access Journals (Sweden)

    James Gerard Wolff

    2016-11-01

    Full Text Available The SP theory of intelligence, with its realisation in the SP computer model, aims to simplify and integrate observations and concepts across artificial intelligence, mainstream computing, mathematics, and human perception and cognition, with information compression as a unifying theme. This paper describes how abstract structures and processes in the theory may be realised in terms of neurons, their interconnections, and the transmission of signals between neurons. This part of the SP theory -- SP-neural -- is a tentative and partial model for the representation and processing of knowledge in the brain. Empirical support for the SP theory -- outlined in the paper -- provides indirect support for SP-neural.In the abstract part of the SP theory (SP-abstract, all kinds of knowledge are represented with patterns, where a pattern is an array of atomic symbols in one or two dimensions. In SP-neural, the concept of a ‘pattern’ is realised as an array of neurons called a pattern assembly, similar to Hebb's concept of a ‘cell assembly’ but with important differences.Central to the processing of information in SP-abstract is information compression via the matching and unification of patterns (ICMUP and, more specifically, information compression via the powerful concept of multiple alignment, borrowed and adapted from bioinformatics. Processes such as pattern recognition, reasoning and problem solving are achieved via the building of multiple alignments, while unsupervised learning is achieved by creating patterns from sensory information and also by creating patterns from multiple alignments in which there is a partial match between one pattern and another.It is envisaged that, in SP-neural, short-lived neural structures equivalent to multiple alignments will be created via an inter-play of excitatory and inhibitory neural signals. It is also envisaged that unsupervised learning will be achieved by the creation of pattern assemblies from

  5. Nonuniform Illumination Correction Algorithm for Underwater Images Using Maximum Likelihood Estimation Method

    Directory of Open Access Journals (Sweden)

    Sonali Sachin Sankpal

    2016-01-01

    Full Text Available Scattering and absorption of light is main reason for limited visibility in water. The suspended particles and dissolved chemical compounds in water are also responsible for scattering and absorption of light in water. The limited visibility in water results in degradation of underwater images. The visibility can be increased by using artificial light source in underwater imaging system. But the artificial light illuminates the scene in a nonuniform fashion. It produces bright spot at the center with the dark region at surroundings. In some cases imaging system itself creates dark region in the image by producing shadow on the objects. The problem of nonuniform illumination is neglected by the researchers in most of the image enhancement techniques of underwater images. Also very few methods are discussed showing the results on color images. This paper suggests a method for nonuniform illumination correction for underwater images. The method assumes that natural underwater images are Rayleigh distributed. This paper used maximum likelihood estimation of scale parameter to map distribution of image to Rayleigh distribution. The method is compared with traditional methods for nonuniform illumination correction using no-reference image quality metrics like average luminance, average information entropy, normalized neighborhood function, average contrast, and comprehensive assessment function.

  6. Computation of nonuniform transmission lines using the FDTD method

    Energy Technology Data Exchange (ETDEWEB)

    Miranda, G.C.; Paulino, J.O.S. [Universidade Federal de Minas Gerais, Belo Horizonte, MG (Brazil). School of Engineering

    1997-12-31

    Calculation of lightning overvoltages on transmission lines has been described. Lightning induced overvoltages are of great significance under certain conditions because of the main characteristics of the phenomena. The lightning channel model is one of the most important parameters essential to obtaining the generated electromagnetic fields. In this study, nonuniform transmission line equations were solved using the finite difference method and the leap-frog scheme, the Finite Difference Time Domain (FDTD) method. The subroutine was interfaced with the Electromagnetic Transients Program (EMTP). Two models were used to represent the characteristic impedance of the nonuniform lines used to model the transmission line towers and the lightning main channel. The advantages of the FDTD method was the much smaller code and faster processing time. 35 refs., 5 figs.

  7. Gas-Dynamic Methods to Reduce Gas Flow Nonuniformity from the Annular Frames of Gas Turbine Engines

    Science.gov (United States)

    Kolmakova, D.; Popov, G.

    2018-01-01

    Gas flow nonuniformity is one of the main sources of rotor blade vibrations in the gas turbine engines. Usually, the flow circumferential nonuniformity occurs near the annular frames, located in the flow channel of the engine. This leads to the increased dynamic stresses in blades and consequently to the blade damage. The goal of the research was to find an acceptable method of reducing the level of gas flow nonuniformity. Two different methods were investigated during this research. Thus, this study gives the ideas about methods of improving the flow structure in gas turbine engine. Based on existing conditions (under development or existing engine) it allows the selection of the most suitable method for reducing gas flow nonuniformity.

  8. Plasmonic Properties of Vertically Aligned Nanowire Arrays

    Directory of Open Access Journals (Sweden)

    Hua Qi

    2012-01-01

    Full Text Available Nanowires (NWs/Ag sheath composites were produced to investigate plasmonic coupling between vertically aligned NWs for surface-enhanced Raman scattering (SERS applications. In this investigation, two types of vertical NW arrays were studied; those of ZnO NWs grown on nanosphere lithography patterned sapphire substrate via vapor-liquid-solid (VLS mechanism and Si NW arrays produced by wet chemical etching. Both types of vertical NW arrays were coated with a thin layer of silver by electroless silver plating for SERS enhancement studies. The experimental results show extremely strong SERS signals due to plasmonic coupling between the NWs, which was verified by COMSOL electric field simulations. We also compared the SERS enhancement intensity of aligned and random ZnO NWs, indicating that the aligned NWs show much stronger and repeatable SERS signal than those grown in nonaligned geometries.

  9. Nonuniform grid implicit spatial finite difference method for acoustic wave modeling in tilted transversely isotropic media

    KAUST Repository

    Chu, Chunlei

    2012-01-01

    Discrete earth models are commonly represented by uniform structured grids. In order to ensure accurate numerical description of all wave components propagating through these uniform grids, the grid size must be determined by the slowest velocity of the entire model. Consequently, high velocity areas are always oversampled, which inevitably increases the computational cost. A practical solution to this problem is to use nonuniform grids. We propose a nonuniform grid implicit spatial finite difference method which utilizes nonuniform grids to obtain high efficiency and relies on implicit operators to achieve high accuracy. We present a simple way of deriving implicit finite difference operators of arbitrary stencil widths on general nonuniform grids for the first and second derivatives and, as a demonstration example, apply these operators to the pseudo-acoustic wave equation in tilted transversely isotropic (TTI) media. We propose an efficient gridding algorithm that can be used to convert uniformly sampled models onto vertically nonuniform grids. We use a 2D TTI salt model to demonstrate its effectiveness and show that the nonuniform grid implicit spatial finite difference method can produce highly accurate seismic modeling results with enhanced efficiency, compared to uniform grid explicit finite difference implementations. © 2011 Elsevier B.V.

  10. A Grazing-Incidence Small-Angle X-Ray Scattering View of Vertically Aligned ZnO Nano wires

    International Nuclear Information System (INIS)

    Lavcevic, M.L.; Silovic, L.; Dubcek, P.; Pavlovic, M.; Bernstorff, S.

    2013-01-01

    We report a grazing-incidence small-angle X-ray scattering study of ZnO films with vertically aligned and randomly distributed nano wires, grown through a hydrothermal growth process on nano structured ZnO seeding coatings and deposited by electron beam evaporation on silicon and glass, respectively. The comparison of the scattering patterns of seeding coatings and nano wires showed that the scattering of vertically aligned nano wires exhibited a specific feature: the dominant characteristic of their scattering patterns is the appearance of fine structure effects around the specular peak. These effects were clarified by the combined reflection and scattering phenomena, suggested for the aligned nano wires-substrate system. Furthermore, they enabled the calculation of the average gyration radius of nano wires in horizontal direction. The calculated value was in good agreement with the radii of nano wires estimated by surface electron microscopy. Therefore, the observed feature in the scattering pattern can serve as evidence of the aligned growth of nano wires.

  11. Modeling of nonuniform corrosion in salt brines: Salt Repository Project

    International Nuclear Information System (INIS)

    Reimus, P.W.

    1988-03-01

    A mechanistic approach to modeling nonuniform corrosion in brines is presented in this report. Equations are derived for completely describing the electrochemical environment within a localized corrosion cavity, and appropriate initial and boundary conditions are invoked to obtain a solvable system of equations. The initial and boundary conditions can be adjusted to simulate pitting, crevice corrosion, or stress corrosion cracking. Although no numerical results are presented, a numerical strategy for solving the equations is presented. The report focuses on the nonuniform corrosion behavior of mild steel; however, the modeling approach presented is expected to apply to a broad range of metallic materials. 34 refs., 5 figs., 2 tabs

  12. Vibration of nonuniform carbon nanotube with attached mass via nonlocal Timoshenko beam theory

    International Nuclear Information System (INIS)

    Tang, Hai Li; Shen, Zhi Bin; Li, Dao Kui

    2014-01-01

    This paper studies the vibrational behavior of nonuniform single-walled carbon nanotube (SWCNT) carrying a nanoparticle. A nonuniform cantilever beam with a concentrated mass at the free end is analyzed according to the nonlocal Timoshenko beam theory. A governing equation of a nonuniform SWCNT with attached mass is established. The transfer function method incorporating with the perturbation method is utilized to obtain the resonant frequencies of a vibrating nonlocal cantilever-mass system. The effects of the nonlocal parameter, taper ratio and attached mass on the natural frequencies and frequency shifts are discussed. Obtained results indicate that the sensitivity of the frequency shifts on the attached mass increases when the length-to-diameter ratio decreases. Tapered SWCNT possesses higher fundamental frequencies if the taper ratio becomes larger.

  13. An Investigation into Conversion from Non-Uniform Rational B-Spline Boundary Representation Geometry to Constructive Solid Geometry

    Science.gov (United States)

    2015-12-01

    ARL-SR-0347 ● DEC 2015 US Army Research Laboratory An Investigation into Conversion from Non-Uniform Rational B-Spline Boundary...US Army Research Laboratory An Investigation into Conversion from Non-Uniform Rational B-Spline Boundary Representation Geometry to...from Non-Uniform Rational B-Spline Boundary Representation Geometry to Constructive Solid Geometry 5a. CONTRACT NUMBER 5b. GRANT NUMBER 5c

  14. AlignMe—a membrane protein sequence alignment web server

    Science.gov (United States)

    Stamm, Marcus; Staritzbichler, René; Khafizov, Kamil; Forrest, Lucy R.

    2014-01-01

    We present a web server for pair-wise alignment of membrane protein sequences, using the program AlignMe. The server makes available two operational modes of AlignMe: (i) sequence to sequence alignment, taking two sequences in fasta format as input, combining information about each sequence from multiple sources and producing a pair-wise alignment (PW mode); and (ii) alignment of two multiple sequence alignments to create family-averaged hydropathy profile alignments (HP mode). For the PW sequence alignment mode, four different optimized parameter sets are provided, each suited to pairs of sequences with a specific similarity level. These settings utilize different types of inputs: (position-specific) substitution matrices, secondary structure predictions and transmembrane propensities from transmembrane predictions or hydrophobicity scales. In the second (HP) mode, each input multiple sequence alignment is converted into a hydrophobicity profile averaged over the provided set of sequence homologs; the two profiles are then aligned. The HP mode enables qualitative comparison of transmembrane topologies (and therefore potentially of 3D folds) of two membrane proteins, which can be useful if the proteins have low sequence similarity. In summary, the AlignMe web server provides user-friendly access to a set of tools for analysis and comparison of membrane protein sequences. Access is available at http://www.bioinfo.mpg.de/AlignMe PMID:24753425

  15. The magneto-optical properties of non-uniform graphene nanoribbons

    Science.gov (United States)

    Chung, Hsien-Ching; Lin, Ming-Fa

    2015-03-01

    When synthesizing few-layer graphene nanoribbons (GNRs), non-uniform GNRs would be made simultaneously. Recently, the non-uniform GNRs, which is a stack of two GNRs with unequal widths, have been fabricated by mechanically exfoliated from bulk graphite. Some theoretical predictions have been reported, such as gap opening and transport properties. Under the influence of magnetic fields, magnetic quantization takes place and drastically changes the electronic properties. By tuning the geometric configuration, four categories of magneto-electronic spectra are exhibited. (1) The spectrum is mostly contributed by quasi-Landau levels (QLLs) of monolayer GNRs. (2) The spectrum displays two groups of QLLs, and the non-uniform GNR behaves like a bilayer one. (3) An intermediate category, the spectrum is composite disordered. (4) The spectrum presents the coexistence of monolayer and bilayer spectra. In this work, the magneto-electronic and optical properties for different geometric configurations are given, such as energy dispersions, density of states, wave functions, and magneto-absorption spectra are presented. Furthermore, the transformation between monolayer and bilayer spectra as well as the coexistence of monolayer and bilayer spectra are discussed in detail. One of us (Hsien-Ching Chung) thanks Ming-Hui Chung and Su-Ming Chen for financial support. This work was supported in part by the National Science Council of Taiwan under Grant Number 98-2112-M-006-013-MY4.

  16. Optical alignment using a CGH and an autostigmatic microscope

    Science.gov (United States)

    Parks, Robert E.

    2017-08-01

    We show how custom computer generated holograms (CGH) are used along with an autostigmatic microscope (ASM) to align both optical and mechanical components relative to the CGH. The patterns in the CGHs define points and lines in space when interrogated with the focus of the ASM. Once the ASM is aligned to the CGH, an optical or mechanical component such as a lens, a well-polished ball or a cylinder can be aligned to the ASM in 3 or 4 degrees of freedom and thus to the CGH. In this case we show how a CGH is used to make a fixture for cementing a doublet lens without the need for a rotary table or a precision vertical stage.

  17. Genomic multiple sequence alignments: refinement using a genetic algorithm

    Directory of Open Access Journals (Sweden)

    Lefkowitz Elliot J

    2005-08-01

    Full Text Available Abstract Background Genomic sequence data cannot be fully appreciated in isolation. Comparative genomics – the practice of comparing genomic sequences from different species – plays an increasingly important role in understanding the genotypic differences between species that result in phenotypic differences as well as in revealing patterns of evolutionary relationships. One of the major challenges in comparative genomics is producing a high-quality alignment between two or more related genomic sequences. In recent years, a number of tools have been developed for aligning large genomic sequences. Most utilize heuristic strategies to identify a series of strong sequence similarities, which are then used as anchors to align the regions between the anchor points. The resulting alignment is globally correct, but in many cases is suboptimal locally. We describe a new program, GenAlignRefine, which improves the overall quality of global multiple alignments by using a genetic algorithm to improve local regions of alignment. Regions of low quality are identified, realigned using the program T-Coffee, and then refined using a genetic algorithm. Because a better COFFEE (Consistency based Objective Function For alignmEnt Evaluation score generally reflects greater alignment quality, the algorithm searches for an alignment that yields a better COFFEE score. To improve the intrinsic slowness of the genetic algorithm, GenAlignRefine was implemented as a parallel, cluster-based program. Results We tested the GenAlignRefine algorithm by running it on a Linux cluster to refine sequences from a simulation, as well as refine a multiple alignment of 15 Orthopoxvirus genomic sequences approximately 260,000 nucleotides in length that initially had been aligned by Multi-LAGAN. It took approximately 150 minutes for a 40-processor Linux cluster to optimize some 200 fuzzy (poorly aligned regions of the orthopoxvirus alignment. Overall sequence identity increased only

  18. Thermal characterization of magnetically aligned carbonyl iron/agar composites.

    Science.gov (United States)

    Diaz-Bleis, D; Vales-Pinzón, C; Freile-Pelegrín, Y; Alvarado-Gil, J J

    2014-01-01

    Composites of magnetic particles into polymeric matrices have received increasing research interest due to their capacity to respond to external magnetic or electromagnetic fields. In this study, agar from Gelidium robustum has been chosen as natural biocompatible polymer to build the matrix of the magnetic carbonyl iron particles (CIP) for their uses in biomedical fields. Heat transfer behavior of the CIP-agar composites containing different concentrations (5, 10, 15, 20, 25 and 30% w/w) of magnetically aligned and non-aligned CIP in the agar matrix was studied using photothermal radiometry (PTR) in the back-propagation emission configuration. The morphology of the CIP-agar composites with aligned and non-aligned CIP under magnetic field was also evaluated by scanning electron microscopy (SEM). The results revealed a dominant effect of CIP concentration over the alignment patterns induced by the magnetic field, which agrees with the behavior of the thermal diffusivity and thermal conductivity. Agar served as a perfect matrix to be used with CIP, and CIP-agar composites magnetically aligned at 20% CIP concentration can be considered as promising 'smart' material for hyperthermia treatments in the biomedical field. Copyright © 2013 Elsevier Ltd. All rights reserved.

  19. Alignment of symmetric top molecules by short laser pulses

    DEFF Research Database (Denmark)

    Hamilton, Edward; Seideman, Tamar; Ejdrup, Tine

    2005-01-01

    -resolved photofragment imaging. Using methyliodide and tert-butyliodide as examples, we calculate and measure the alignment dynamics, focusing on the temporal structure and intensity of the revival patterns, including their dependence on the pulse duration, and their behavior at long times, where centrifugal distortion......Nonadiabatic alignment of symmetric top molecules induced by a linearly polarized, moderately intense picosecond laser pulse is studied theoretically and experimentally. Our studies are based on the combination of a nonperturbative solution of the Schrodinger equation with femtosecond time...

  20. GraphAlignment: Bayesian pairwise alignment of biological networks

    Directory of Open Access Journals (Sweden)

    Kolář Michal

    2012-11-01

    Full Text Available Abstract Background With increased experimental availability and accuracy of bio-molecular networks, tools for their comparative and evolutionary analysis are needed. A key component for such studies is the alignment of networks. Results We introduce the Bioconductor package GraphAlignment for pairwise alignment of bio-molecular networks. The alignment incorporates information both from network vertices and network edges and is based on an explicit evolutionary model, allowing inference of all scoring parameters directly from empirical data. We compare the performance of our algorithm to an alternative algorithm, Græmlin 2.0. On simulated data, GraphAlignment outperforms Græmlin 2.0 in several benchmarks except for computational complexity. When there is little or no noise in the data, GraphAlignment is slower than Græmlin 2.0. It is faster than Græmlin 2.0 when processing noisy data containing spurious vertex associations. Its typical case complexity grows approximately as O(N2.6. On empirical bacterial protein-protein interaction networks (PIN and gene co-expression networks, GraphAlignment outperforms Græmlin 2.0 with respect to coverage and specificity, albeit by a small margin. On large eukaryotic PIN, Græmlin 2.0 outperforms GraphAlignment. Conclusions The GraphAlignment algorithm is robust to spurious vertex associations, correctly resolves paralogs, and shows very good performance in identification of homologous vertices defined by high vertex and/or interaction similarity. The simplicity and generality of GraphAlignment edge scoring makes the algorithm an appropriate choice for global alignment of networks.

  1. Effects of Nonuniform Incident Illumination on the Thermal Performance of a Concentrating Triple Junction Solar Cell

    Directory of Open Access Journals (Sweden)

    Fahad Al-Amri

    2014-01-01

    Full Text Available A numerical heat transfer model was developed to investigate the temperature of a triple junction solar cell and the thermal characteristics of the airflow in a channel behind the solar cell assembly using nonuniform incident illumination. The effects of nonuniformity parameters, emissivity of the two channel walls, and Reynolds number were studied. The maximum solar cell temperature sharply increased in the presence of nonuniform light profiles, causing a drastic reduction in overall efficiency. This resulted in two possible solutions for solar cells to operate in optimum efficiency level: (i adding new receiver plate with higher surface area or (ii using forced cooling techniques to reduce the solar cell temperature. Thus, surface radiation exchanges inside the duct and Re significantly reduced the maximum solar cell temperature, but a conventional plain channel cooling system was inefficient for cooling the solar cell at medium concentrations when the system was subjected to a nonuniform light distribution. Nonuniformity of the incident light and surface radiation in the duct had negligible effects on the collected thermal energy.

  2. Synergistic nonuniform shortening of atrial refractory period induced by autonomic stimulation.

    Science.gov (United States)

    Takei, M; Furukawa, Y; Narita, M; Ren, L M; Karasawa, Y; Murakami, M; Chiba, S

    1991-12-01

    We investigated the nonuniform effects of autonomic nerve stimulation of the effective refractory period (ERP) of the right atrium in the anesthetized dog. Stimulation of the discrete intracardiac sympathetic nerves to the sinoatrial (SA) nodal region uniformly shortened ERPs at three sites in the right atrium after administration of atropine. Right ansa subclavia (RS) stimulation similarly shortened ERPs in the absence of atropine. Stimulation of the discrete intracardiac parasympathetic nerves to the SA nodal region (SAP stimulation) shortened ERPs of the right atrium in a nonuniform manner. Simultaneous RS and SAP stimulation additively shortened ERPs at each site and decreased sinus rate much more than SAP stimulation alone. Shortening of ERP induced by SAP stimulation was greater than that induced by RS stimulation at similar absolute changes in heart rate. These results suggest that simultaneous activation of sympathetic and parasympathetic nerves nonuniformly shortens the ERP in the right atrium as the algebraic sum of the individual responses to each stimulation. However, parasympathetics exert the principal neural control over atrial ERP.

  3. Multiple network alignment on quantum computers

    Science.gov (United States)

    Daskin, Anmer; Grama, Ananth; Kais, Sabre

    2014-12-01

    Comparative analyses of graph-structured datasets underly diverse problems. Examples of these problems include identification of conserved functional components (biochemical interactions) across species, structural similarity of large biomolecules, and recurring patterns of interactions in social networks. A large class of such analyses methods quantify the topological similarity of nodes across networks. The resulting correspondence of nodes across networks, also called node alignment, can be used to identify invariant subgraphs across the input graphs. Given graphs as input, alignment algorithms use topological information to assign a similarity score to each -tuple of nodes, with elements (nodes) drawn from each of the input graphs. Nodes are considered similar if their neighbors are also similar. An alternate, equivalent view of these network alignment algorithms is to consider the Kronecker product of the input graphs and to identify high-ranked nodes in the Kronecker product graph. Conventional methods such as PageRank and HITS (Hypertext-Induced Topic Selection) can be used for this purpose. These methods typically require computation of the principal eigenvector of a suitably modified Kronecker product matrix of the input graphs. We adopt this alternate view of the problem to address the problem of multiple network alignment. Using the phase estimation algorithm, we show that the multiple network alignment problem can be efficiently solved on quantum computers. We characterize the accuracy and performance of our method and show that it can deliver exponential speedups over conventional (non-quantum) methods.

  4. Using ESTs for phylogenomics: Can one accurately infer a phylogenetic tree from a gappy alignment?

    Directory of Open Access Journals (Sweden)

    Hartmann Stefanie

    2008-03-01

    Full Text Available Abstract Background While full genome sequences are still only available for a handful of taxa, large collections of partial gene sequences are available for many more. The alignment of partial gene sequences results in a multiple sequence alignment containing large gaps that are arranged in a staggered pattern. The consequences of this pattern of missing data on the accuracy of phylogenetic analysis are not well understood. We conducted a simulation study to determine the accuracy of phylogenetic trees obtained from gappy alignments using three commonly used phylogenetic reconstruction methods (Neighbor Joining, Maximum Parsimony, and Maximum Likelihood and studied ways to improve the accuracy of trees obtained from such datasets. Results We found that the pattern of gappiness in multiple sequence alignments derived from partial gene sequences substantially compromised phylogenetic accuracy even in the absence of alignment error. The decline in accuracy was beyond what would be expected based on the amount of missing data. The decline was particularly dramatic for Neighbor Joining and Maximum Parsimony, where the majority of gappy alignments contained 25% to 40% incorrect quartets. To improve the accuracy of the trees obtained from a gappy multiple sequence alignment, we examined two approaches. In the first approach, alignment masking, potentially problematic columns and input sequences are excluded from from the dataset. Even in the absence of alignment error, masking improved phylogenetic accuracy up to 100-fold. However, masking retained, on average, only 83% of the input sequences. In the second approach, alignment subdivision, the missing data is statistically modelled in order to retain as many sequences as possible in the phylogenetic analysis. Subdivision resulted in more modest improvements to alignment accuracy, but succeeded in including almost all of the input sequences. Conclusion These results demonstrate that partial gene

  5. Using ESTs for phylogenomics: can one accurately infer a phylogenetic tree from a gappy alignment?

    Science.gov (United States)

    Hartmann, Stefanie; Vision, Todd J

    2008-03-26

    While full genome sequences are still only available for a handful of taxa, large collections of partial gene sequences are available for many more. The alignment of partial gene sequences results in a multiple sequence alignment containing large gaps that are arranged in a staggered pattern. The consequences of this pattern of missing data on the accuracy of phylogenetic analysis are not well understood. We conducted a simulation study to determine the accuracy of phylogenetic trees obtained from gappy alignments using three commonly used phylogenetic reconstruction methods (Neighbor Joining, Maximum Parsimony, and Maximum Likelihood) and studied ways to improve the accuracy of trees obtained from such datasets. We found that the pattern of gappiness in multiple sequence alignments derived from partial gene sequences substantially compromised phylogenetic accuracy even in the absence of alignment error. The decline in accuracy was beyond what would be expected based on the amount of missing data. The decline was particularly dramatic for Neighbor Joining and Maximum Parsimony, where the majority of gappy alignments contained 25% to 40% incorrect quartets. To improve the accuracy of the trees obtained from a gappy multiple sequence alignment, we examined two approaches. In the first approach, alignment masking, potentially problematic columns and input sequences are excluded from from the dataset. Even in the absence of alignment error, masking improved phylogenetic accuracy up to 100-fold. However, masking retained, on average, only 83% of the input sequences. In the second approach, alignment subdivision, the missing data is statistically modelled in order to retain as many sequences as possible in the phylogenetic analysis. Subdivision resulted in more modest improvements to alignment accuracy, but succeeded in including almost all of the input sequences. These results demonstrate that partial gene sequences and gappy multiple sequence alignments can pose a

  6. A nonuniform-polarization high-energy ultra-broadband laser with a long erbium-doped fiber

    International Nuclear Information System (INIS)

    Mao, Dong

    2013-01-01

    We have experimentally investigated nonuniformly polarized broadband high-energy pulses delivered from a mode-locked laser with an ultra-long erbium-doped fiber (EDF). The pulses exhibit a broadband spectrum of ∼73 nm and can avoid optical wave breaking at high-pump regimes. The polarization states of the pulses evolve from uniform to nonuniform at each round trip in the oscillator, which is distinct from other pulses. Remarkably, the output pulses broaden in anomalous- or normal-dispersion regimes while they can be shortened with an EDF amplifier external to the cavity. Our results suggest that the long EDF results in a nonuniform-polarization state and plays a decisive role in the formation of high-energy pulses. (paper)

  7. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    G.Gomez.

    Since June of 2009, the muon alignment group has focused on providing new alignment constants and on finalizing the hardware alignment reconstruction. Alignment constants for DTs and CSCs were provided for CRAFT09 data reprocessing. For DT chambers, the track-based alignment was repeated using CRAFT09 cosmic ray muons and validated using segment extrapolation and split cosmic tools. One difference with respect to the previous alignment is that only five degrees of freedom were aligned, leaving the rotation around the local x-axis to be better determined by the hardware system. Similarly, DT chambers poorly aligned by tracks (due to limited statistics) were aligned by a combination of photogrammetry and hardware-based alignment. For the CSC chambers, the hardware system provided alignment in global z and rotations about local x. Entire muon endcap rings were further corrected in the transverse plane (global x and y) by the track-based alignment. Single chamber track-based alignment suffers from poor statistic...

  8. Shape Preserving Interpolatory Subdivision Schemes for Nonuniform Data

    NARCIS (Netherlands)

    Kuijt, F.; van Damme, Rudolf M.J.

    2002-01-01

    This article is concerned with a class of shape preserving four-point subdivision schemes which are stationary and which interpolate nonuniform univariate data {(xi, fi)}. These data are functional data, i.e., xi≠xj if i≠j. Subdivision for the strictly monotone x-values is performed by a subdivision

  9. Josephson flux-flow oscillators in nonuniform microwave fields

    DEFF Research Database (Denmark)

    Salerno, Mario; Samuelsen, Mogens Rugholm

    2000-01-01

    We present a simple theory for Josephson flux-flow oscillators in the presence of nonuniform microwave fields. In particular we derive an analytical expression for the I-V characteristic of the oscillator from which we show that satellite steps are spaced around the main flux-flow resonance by only...

  10. Absolute parametric instability in a nonuniform plane plasma

    Indian Academy of Sciences (India)

    The paper reports an analysis of the effect of spatial plasma nonuniformity on absolute parametric instability (API) of electrostatic waves in magnetized plane waveguides subjected to an intense high-frequency (HF) electric field using the separation method. In this case the effect of strong static magnetic field is considered.

  11. Thermal freeze-out and longitudinally non-uniform collective expansion flow in relativistic heavy ion collisions

    CERN Document Server

    Feng Sheng Qin; LianShouLiu

    2002-01-01

    The non-uniform longitudinal flow model (NUFM) proposed recently is extended to include also the transverse flow. The resulting longitudinally non-uniform collective expansion model (NUCEM) is applied to the calculation of rapidity distribution of kaons, lambdas and protons in relativistic heavy ion collisions at CERN-SPS energies. The model results are compared with the 200 A GeV/c S-S and 158 A GeV/c Pb-Pb collision data. The central dips observed in experiments are reproduced in a natural way. It is found that the depth of the central dip depends on the magnitude of the parameter e and the mass of produced particles, i.e. the non-uniformity of the longitudinal flow which is described by the parameter e determines the depth of the central dip for produced particles. Comparing with one-dimensional non-uniform longitudinal flow model, the rapidity distribution of lighter strange particle kaon also shows a dip due to the effect of transverse flow

  12. Research on Creep Relaxation Non-uniformity and Effect on Performance of Combined Rotor

    Science.gov (United States)

    Liu, Qingya; He, Jingfei; Zhao, Lijia

    2017-11-01

    The combined rotor of gas turbine is connected by a certain number of rod bolts. It works in the high temperature environment for a long time, and the rod bolts will creep and relax. Under the influence of elastic interaction, the loss of pretightening force of rod bolts at different positions is non-uniform, which will cause the connection of the combined rotor to be out of tune. In this paper, the creep relaxation non-uniformity model for a class F heavy duty gas turbine is established. On the basis of this, the performance degradation and structural strength change of combined rotor resulting from creep relaxation non-uniformity of rod bolts are studied. The results show that the ratio of preload mistuning increases with time and then converges, and there is a threshold inflection point in about seven thousand hours.

  13. Nonquasineutral electron vortices in nonuniform plasmas

    Energy Technology Data Exchange (ETDEWEB)

    Angus, J. R.; Richardson, A. S.; Swanekamp, S. B.; Schumer, J. W. [Plasma Physics Division, Naval Research Laboratory, Washington, District of Columbia 20375 (United States); Ottinger, P. F. [Engility Corporation, Chantilly, Virginia 20151 (United States)

    2014-11-15

    Electron vortices are observed in the numerical simulation of current carrying plasmas on fast time scales where the ion motion can be ignored. In plasmas with nonuniform density n, vortices drift in the B × ∇n direction with a speed that is on the order of the Hall speed. This provides a mechanism for magnetic field penetration into a plasma. Here, we consider strong vortices with rotation speeds V{sub ϕ} close to the speed of light c where the vortex size δ is on the order of the magnetic Debye length λ{sub B}=|B|/4πen and the vortex is thus nonquasineutral. Drifting vortices are typically studied using the electron magnetohydrodynamic model (EMHD), which ignores the displacement current and assumes quasineutrality. However, these assumptions are not strictly valid for drifting vortices when δ ≈ λ{sub B}. In this paper, 2D electron vortices in nonuniform plasmas are studied for the first time using a fully electromagnetic, collisionless fluid code. Relatively large amplitude oscillations with periods that correspond to high frequency extraordinary modes are observed in the average drift speed. The drift speed W is calculated by averaging the electron velocity field over the vorticity. Interestingly, the time-averaged W from these simulations matches very well with W from the much simpler EMHD simulations even for strong vortices with order unity charge density separation.

  14. Absolute parametric instability in a nonuniform plane plasma ...

    Indian Academy of Sciences (India)

    Abstract. The paper reports an analysis of the effect of spatial plasma nonuniformity on absolute parametric instability (API) of electrostatic waves in magnetized plane waveguides subjected to an intense high-frequency (HF) electric field using the separation method. In this case the effect of strong static magnetic field is ...

  15. Nonuniform grid implicit spatial finite difference method for acoustic wave modeling in tilted transversely isotropic media

    KAUST Repository

    Chu, Chunlei; Stoffa, Paul L.

    2012-01-01

    sampled models onto vertically nonuniform grids. We use a 2D TTI salt model to demonstrate its effectiveness and show that the nonuniform grid implicit spatial finite difference method can produce highly accurate seismic modeling results with enhanced

  16. Determination of non-uniformity correction factors for cylindrical ionization chambers close to 192Ir brachytherapy sources

    International Nuclear Information System (INIS)

    Toelli, H.; Bielajew, A. F.; Mattsson, O.; Sernbo, G.

    1995-01-01

    When ionization chambers are used in brachytherapy dosimetry, the measurements must be corrected for the non-uniformity of the incident photon fluence. The theory for determination of non-uniformity correction factors, developed by Kondo and Randolph (Rad. Res. 1960) assumes that the electron fluence within the air cavity is isotropic and does not take into account material differences in the chamber wall. The theory was extended by Bielajew (PMB 1990) using an anisotropic electron angular fluence in the cavity. In contrast to the theory by Kondo and Randolph, the anisotropic theory predicts a wall material dependence in the non-uniformity correction factors. This work presents experimental determination of non-uniformity correction factors at distances between 10 and 140 mm from an Ir-192 source. The experimental work makes use of a PTW23331-chamber and Farmer-type chambers (NE2571 and NE2581) with different materials in the walls. The results of the experiments agree well with the anisotropic theory. Due to the geometrical shape of the NE-type chambers, it is shown that the full length of the these chambers, 24.1mm, is not an appropriate input parameter when theoretical non-uniformity correction factors are evaluated

  17. Intimal cushions and endothelial nuclear elongation around mouse aortic branches and their spatial correspondence with patterns of lipid deposition

    Science.gov (United States)

    Bond, Andrew R.; Ni, Chih-Wen; Jo, Hanjoong

    2010-01-01

    Spatial variation in hemodynamic stresses acting on the arterial wall may explain the nonuniform distribution of atherosclerosis. In thoracic aortas of LDL receptor/apolipoprotein E double knockout mice, lesions develop preferentially around the entire circumference of intercostal branch ostia, regardless of age, with the highest prevalence occurring upstream. Additional chevron-shaped lesions occur further upstream of the ostia. This pattern differs from the age-related ones occurring in people and rabbits. In the present study, patterns of near-wall blood flow around intercostal ostia in wild-type mice were estimated from the morphology of endothelial nuclei, which were shown in vitro to elongate in response to elevated shear stress and to align with the flow, and wall structure was assessed from confocal and scanning electron microscopy. A triangular intimal cushion surrounded the upstream part of most ostia. Nuclear length-to-width ratios were lowest over this cushion and highest at the sides of branches, regardless of age. Nuclear orientations were consistent with flow diverging around the branch. The pattern of nuclear morphology differed from the age-related ones observed in rabbits. The intimal cushion and the distribution of shear stress inferred from these observations can partly account for the pattern of lesions observed in knockout mice. Nuclear elongation in nonbranch regions was approximately constant across animals of different size, demonstrating the existence of a mechanism by which endothelial cells compensate for the dependence of mean aortic wall shear stress on body mass. PMID:19933414

  18. A Non-Uniformly Under-Sampled Blade Tip-Timing Signal Reconstruction Method for Blade Vibration Monitoring

    Directory of Open Access Journals (Sweden)

    Zheng Hu

    2015-01-01

    Full Text Available High-speed blades are often prone to fatigue due to severe blade vibrations. In particular, synchronous vibrations can cause irreversible damages to the blade. Blade tip-timing methods (BTT have become a promising way to monitor blade vibrations. However, synchronous vibrations are unsuitably monitored by uniform BTT sampling. Therefore, non-equally mounted probes have been used, which will result in the non-uniformity of the sampling signal. Since under-sampling is an intrinsic drawback of BTT methods, how to analyze non-uniformly under-sampled BTT signals is a big challenge. In this paper, a novel reconstruction method for non-uniformly under-sampled BTT data is presented. The method is based on the periodically non-uniform sampling theorem. Firstly, a mathematical model of a non-uniform BTT sampling process is built. It can be treated as the sum of certain uniform sample streams. For each stream, an interpolating function is required to prevent aliasing in the reconstructed signal. Secondly, simultaneous equations of all interpolating functions in each sub-band are built and corresponding solutions are ultimately derived to remove unwanted replicas of the original signal caused by the sampling, which may overlay the original signal. In the end, numerical simulations and experiments are carried out to validate the feasibility of the proposed method. The results demonstrate the accuracy of the reconstructed signal depends on the sampling frequency, the blade vibration frequency, the blade vibration bandwidth, the probe static offset and the number of samples. In practice, both types of blade vibration signals can be particularly reconstructed by non-uniform BTT data acquired from only two probes.

  19. Formatt: Correcting protein multiple structural alignments by incorporating sequence alignment

    Directory of Open Access Journals (Sweden)

    Daniels Noah M

    2012-10-01

    Full Text Available Abstract Background The quality of multiple protein structure alignments are usually computed and assessed based on geometric functions of the coordinates of the backbone atoms from the protein chains. These purely geometric methods do not utilize directly protein sequence similarity, and in fact, determining the proper way to incorporate sequence similarity measures into the construction and assessment of protein multiple structure alignments has proved surprisingly difficult. Results We present Formatt, a multiple structure alignment based on the Matt purely geometric multiple structure alignment program, that also takes into account sequence similarity when constructing alignments. We show that Formatt outperforms Matt and other popular structure alignment programs on the popular HOMSTRAD benchmark. For the SABMark twilight zone benchmark set that captures more remote homology, Formatt and Matt outperform other programs; depending on choice of embedded sequence aligner, Formatt produces either better sequence and structural alignments with a smaller core size than Matt, or similarly sized alignments with better sequence similarity, for a small cost in average RMSD. Conclusions Considering sequence information as well as purely geometric information seems to improve quality of multiple structure alignments, though defining what constitutes the best alignment when sequence and structural measures would suggest different alignments remains a difficult open question.

  20. Surface magnetic canting in a nonuniform film

    International Nuclear Information System (INIS)

    Pini, M.G.; Rettori, A.; Pappas, D.P.; Anisimov, A.V.; Popov, A.P.

    2004-01-01

    The zero temperature equilibrium configuration of a nonuniform system made of a ferromagnetic (FM) monolayer on top of a semi-infinite FM film is calculated using a nonlinear mapping formulation of mean-field theory, where the surface is taken into account via an appropriate boundary condition. The analytical criterion for the existence of surface magnetic canting, previously obtained by Popov and Pappas, is also recovered

  1. The use of non-uniform drowning terminology: a follow-up study.

    Science.gov (United States)

    Schmidt, Andrew C; Sempsrott, Justin R; Szpilman, David; Queiroga, Ana Catarina; Davison, Matt S; Zeigler, Ryan J; McAlister, Sean J

    2017-07-17

    In 2002, the World Congress on Drowning developed a uniform definition for drowning. The aim of this study is to determine the prevalence of "non-uniform drowning terminology" (NUDT) and "non-uniform drowning definitions" (NUDD) in peer-reviewed scientific literature from 2010 to 2016, and compare these findings with those from our unpublished study performing a similar analysis on literature from 2003 to 2010. A systematic review was performed using drowning-specific search terms in Pubmed and Web of Science. Titles and abstracts published between July 2010 and January 2016 were screened for relevance to the study focus. Articles meeting screening criteria were reviewed for exclusion criteria to produce the final group of studies. These articles were reviewed by four reviewers for NUDT and NUDD. The Fisher exact test was used to determine any statistically significant changes. The final group of studies included 167 articles. A total of 53 articles (32%) utilized NUDT, with 100% of these including the term "near drowning". The proportion of articles utilizing NUDT was significantly less than reported by our previous study (p drowning (uniform or non-uniform), with 15% of these utilizing NUDD. Our study reveals a statistically significant improvement over the past thirteen years in the use of uniform drowning terminology in peer-reviewed scientific literature, although year-to-year variability over the current study period does not yield an obvious trend. Of the articles reviewed during the 2010-2016 study period, 32% included outdated and non-uniform drowning terminology and definitions. While this reveals an absolute decrease of 11% as compared with the previous study period (2003-2010), there is still significant room for improvement.

  2. How genome complexity can explain the difficulty of aligning reads to genomes.

    Science.gov (United States)

    Phan, Vinhthuy; Gao, Shanshan; Tran, Quang; Vo, Nam S

    2015-01-01

    Although it is frequently observed that aligning short reads to genomes becomes harder if they contain complex repeat patterns, there has not been much effort to quantify the relationship between complexity of genomes and difficulty of short-read alignment. Existing measures of sequence complexity seem unsuitable for the understanding and quantification of this relationship. We investigated several measures of complexity and found that length-sensitive measures of complexity had the highest correlation to accuracy of alignment. In particular, the rate of distinct substrings of length k, where k is similar to the read length, correlated very highly to alignment performance in terms of precision and recall. We showed how to compute this measure efficiently in linear time, making it useful in practice to estimate quickly the difficulty of alignment for new genomes without having to align reads to them first. We showed how the length-sensitive measures could provide additional information for choosing aligners that would align consistently accurately on new genomes. We formally established a connection between genome complexity and the accuracy of short-read aligners. The relationship between genome complexity and alignment accuracy provides additional useful information for selecting suitable aligners for new genomes. Further, this work suggests that the complexity of genomes sometimes should be thought of in terms of specific computational problems, such as the alignment of short reads to genomes.

  3. Terrestrial carbon cycle affected by non-uniform climate warming

    International Nuclear Information System (INIS)

    Jianyang Xia; Yiqi Luo; Jiquan Chen; Shilong Piao; Ciais, Philippe; Shiqiang Wan

    2014-01-01

    Feedbacks between the terrestrial carbon cycle and climate change could affect many ecosystem functions and services, such as food production, carbon sequestration and climate regulation. The rate of climate warming varies on diurnal and seasonal timescales. A synthesis of global air temperature data reveals a greater rate of warming in winter than in summer in northern mid and high latitudes, and the inverse pattern in some tropical regions. The data also reveal a decline in the diurnal temperature range over 51% of the global land area and an increase over only 13%, because night-time temperatures in most locations have risen faster than daytime temperatures. Analyses of satellite data, model simulations and in situ observations suggest that the impact of seasonal warming varies between regions. For example, spring warming has largely stimulated ecosystem productivity at latitudes between 30 degrees and 90 degrees N, but suppressed productivity in other regions. Contrasting impacts of day- and night-time warming on plant carbon gain and loss are apparent in many regions. We argue that ascertaining the effects of non-uniform climate warming on terrestrial ecosystems is a key challenge in carbon cycle research. (authors)

  4. Direct-driven target implosion in heavy ion fusion

    International Nuclear Information System (INIS)

    Noguchi, K.; Suzuki, T.; Kurosaki, T.; Barada, D.; Kawata, S.; Ma, Y. Y.; Ogoyski, A. I.

    2016-01-01

    In inertial confinement fusion, the driver beam illumination non-uniformity leads a degradation of fusion energy output. A fuel target alignment error would happen in a fusion reactor; the target alignment error induces heavy ion beam illumination non-uniformity on a target. On the other hand, heavy ion beam accelerator provides a capability to oscillate a beam axis with a high frequency. The wobbling beams may provide a new method to reduce or smooth the beam illumination non-uniformity. First we study the effect of driver irradiation non-uniformity induced by the target alignment error (dz) on the target implosion. We found that dz should be less than about 130 μm for a sufficient fusion energy output. We also optimize the wobbling scheme. The spiral wobbling heavy ion beams would provide a promissing scheme to the uniform beam illumination. (paper)

  5. Two-Dimensional Time-Domain Antenna Arrays for Optimum Steerable Energy Pattern with Low Side Lobes

    Directory of Open Access Journals (Sweden)

    Alberto Reyna

    2014-01-01

    Full Text Available This document presents the synthesis of different two-dimensional time-domain antenna arrays for steerable energy patterns with side lobe levels. The research is focused on the uniform and nonuniform distributions of true-time exciting delays and positions of antenna elements. The uniform square array, random array, uniform concentric ring array, and rotated nonuniform concentric ring array geometries are particularly studied. These geometries are synthesized by using the well-known sequential quadratic programming. The synthesis regards the optimal true-time exciting delays and optimal positions of pulsed antenna elements. The results show the capabilities of the different antenna arrays to steer the beam in their energy pattern in time domain and how their performance is in frequency domain after the synthesis in time domain.

  6. Analysis of Quantum Effects in Non-Uniformly Doped MOS Structures

    National Research Council Canada - National Science Library

    Fiegna, Claudio

    1997-01-01

    This paper presents results from the self-consistent solution of Schrodinger and Poisson equations obtained in one-dimensional non-uniformly doped MOS structures suitable for the fabrication of very short transistors...

  7. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    G.Gomez

    2010-01-01

    The main developments in muon alignment since March 2010 have been the production, approval and deployment of alignment constants for the ICHEP data reprocessing. In the barrel, a new geometry, combining information from both hardware and track-based alignment systems, has been developed for the first time. The hardware alignment provides an initial DT geometry, which is then anchored as a rigid solid, using the link alignment system, to a reference frame common to the tracker. The “GlobalPositionRecords” for both the Tracker and Muon systems are being used for the first time, and the initial tracker-muon relative positioning, based on the link alignment, yields good results within the photogrammetry uncertainties of the Tracker and alignment ring positions. For the first time, the optical and track-based alignments show good agreement between them; the optical alignment being refined by the track-based alignment. The resulting geometry is the most complete to date, aligning all 250 DTs, ...

  8. Effects of non-uniformities on electrical conduction in weakly ionized plasmas

    International Nuclear Information System (INIS)

    Numano, M.; Murakami, Y.; Nitta, T.

    1989-01-01

    The effect of non-uniformities on the flow of electric current in weakly ionized plasmas is investigated by taking into account the ion slip as well as the Hall current. An Ohm's law for a non-uniform plasma is derived, from which the formula previously obtained by Numano, i.e. an extension of Rosa's equation, is obtainable as a special case. Making use of this new Ohm's law, the effective electrical conductivity and the effective Hall parameter are determined for isotropically turbulent plasmas. It is found that when the ion-slip effect is absent they are in good agreement with the results obtained previously. (author)

  9. A dynamic model of gas flow in a non-uniform pipe

    International Nuclear Information System (INIS)

    Mensah, S.; Lepp, R.M.

    1979-08-01

    A gas-line model, based on the analysis of compressible flow with friction, has been developed to describe the dynamics of gas flow in a non-uniform line, i.e. one comprising segments of different lengths and diameters. Acoustic wave analysis was used in a novel way, by considering the line as a cascaded connection of uniform pipes separated by discontinuities. The transmission matrix representing this non-uniform line is the product of the matrices for each element in the system. To facilitate implementation of the theoretical model on a hybrid computer, modal approximatons to its transfer functions were derived. Both models were validated against experimental data. (author)

  10. Optimisation of the Crack Pattern in Continuously Reinforced Concrete Pavements

    OpenAIRE

    Ren, D.

    2015-01-01

    Recent field investigations on several new Continuously Reinforced Concrete Pavements (CRCP) in Belgium indicate that its crack pattern is characterized by low mean crack spacing along with a high percentage of clusters of closely spaced cracks. Field surveys also indicate that it is difficult to significantly reduce the probability of a non-uniform crack pattern - such as closely spaced cracks, meandering, and Y-cracks - by only slightly adjusting the amount of longitudinal steel. Non-unifor...

  11. To the problem of spatial focusing of ultracold neutrons by nonuniform magnetic field. Eikonal approximation

    CERN Document Server

    Chen, T

    2002-01-01

    Motion of the ultracold neutrons in the nonuniform magnetic field with a square nonuniformity by two coordinates is considered. The Schroedinger equation is solved with application of the quasi-classical (eikonal) approach. The theoretical possibility of the neutrons spatial focusing with formation of the point focus and also the neutrons bunches is shown

  12. Influence of Non-Uniform Magnetic Field on Quantum Teleportation in Heisenberg XY Model

    Institute of Scientific and Technical Information of China (English)

    SHAO Bin; YANG Tie-jian; ZHAO Yue-hong; ZOU Jian

    2007-01-01

    By considering the intrinsic decoherence, the validity of quantum teleportation of a two-qubit 1D Heisenberg XY chain in a non-uniform external magnetic field is studied. The fidelity as the measurement of a possible quantum teleportation is calculated and the effects of the non-uniform magnetic field and the intrinsic decoherence are discussed. It is found that anti-parallel magnetic field is more favorable for teleportation and the fidelity is suppressed by the intrinsic decoherence.

  13. Nonuniform transformation field analysis of multiphase elasto viscoplastic materials: application to MOX fuels

    International Nuclear Information System (INIS)

    Roussette, S.

    2005-05-01

    The description of the overall behavior of nonlinear materials with nonlinear dissipative phases requires an infinity of internal variables. An approximate model involving only a finite number of internal variables, Nonuniform Transformation Field Analysis, is obtained by considering a decomposition of these variables on a finite set of nonuniform transformation fields, called plastic modes. The method is initially developed for incompressible elasto viscoplastic materials. Karhunen-Loeve expansion is proposed to optimize the plastic modes. Then the method is extended to porous elasto viscoplastic materials. Finally the transformation field analysis, developed by Dvorak, is applied to nuclear fuels MOX. This method enables to make sensitivity studies to determine the role of some microstructural parameters on the fuel behaviour. Moreover the adequacy of the nonuniform method for fuels MOX is shown, the final objective being to be able to apply the model to the MOX in 3D. (author)

  14. Spatio-Temporal Patterns in Colonies of Rod-Shaped Bacteria

    Science.gov (United States)

    Kitsunezaki, S.

    In incubation experiments of bacterial colonies of Proteus Mirabilis, macroscopic spatio-temporal patterns, such as turbulent and unidirectional spiral patterns, appear in colonies. Considering only kinetic propeties of rod-shaped bacteria, we propose a phenomenological model for the directional and positional distributions. As the average density increases, homogeneous states bifurcate sub-critically into nonuniform states exhibiting localized collective motion, and spiral patterns appear for sufficiently large density. These patterns result from interactions between the local bacteria densities and the order parameter representing collective motion. Our model can be described by reduced equations using a perturbative method for large density. The unidirectionality of sprial rotation is also discussed.

  15. L-GRAAL: Lagrangian graphlet-based network aligner.

    Science.gov (United States)

    Malod-Dognin, Noël; Pržulj, Nataša

    2015-07-01

    Discovering and understanding patterns in networks of protein-protein interactions (PPIs) is a central problem in systems biology. Alignments between these networks aid functional understanding as they uncover important information, such as evolutionary conserved pathways, protein complexes and functional orthologs. A few methods have been proposed for global PPI network alignments, but because of NP-completeness of underlying sub-graph isomorphism problem, producing topologically and biologically accurate alignments remains a challenge. We introduce a novel global network alignment tool, Lagrangian GRAphlet-based ALigner (L-GRAAL), which directly optimizes both the protein and the interaction functional conservations, using a novel alignment search heuristic based on integer programming and Lagrangian relaxation. We compare L-GRAAL with the state-of-the-art network aligners on the largest available PPI networks from BioGRID and observe that L-GRAAL uncovers the largest common sub-graphs between the networks, as measured by edge-correctness and symmetric sub-structures scores, which allow transferring more functional information across networks. We assess the biological quality of the protein mappings using the semantic similarity of their Gene Ontology annotations and observe that L-GRAAL best uncovers functionally conserved proteins. Furthermore, we introduce for the first time a measure of the semantic similarity of the mapped interactions and show that L-GRAAL also uncovers best functionally conserved interactions. In addition, we illustrate on the PPI networks of baker's yeast and human the ability of L-GRAAL to predict new PPIs. Finally, L-GRAAL's results are the first to show that topological information is more important than sequence information for uncovering functionally conserved interactions. L-GRAAL is coded in C++. Software is available at: http://bio-nets.doc.ic.ac.uk/L-GRAAL/. n.malod-dognin@imperial.ac.uk Supplementary data are available at

  16. Identification of the material properties in nonuniform nanostructures

    International Nuclear Information System (INIS)

    Bao, Gang; Xu, Xiang

    2015-01-01

    This paper is concerned with addressing two significant challenges arising from quantifying mechanical properties of nanomaterials, namely nonuniformity of the nanomaterial and the high noise level of measurements. For nonuniformity, an explicit solution is derived for the general Euler–Bernoulli equation in terms of the Green function for the Poisson equation. Then, by examining a stochastic source, the systematic error may be removed from measurements, which leads to more accurate estimation of mechanical properties. Based on Itô integral properties, three deterministic Fredholm integral equations can be deduced to extract the stiffness and the structure of the random source from measured data. To overcome ill-posedness and high nonlinearity in solving the Fredholm equations, a Tikhonov regularization method is developed with an a priori strategy of choosing the regularization parameter. Moreover, under a regularity assumption for the stiffness coefficient and structures of the random source, the convergence rate can be obtained in the sense of probability. Numerical examples are presented to illustrate the validity and effectiveness of the novel model and regularization method. (paper)

  17. Laterally excited flexible tanks with nonuniform density liquid

    International Nuclear Information System (INIS)

    Tang, Yu

    1996-01-01

    A study of the dynamic responses of flexible tanks containing nonuniform liquid under horizontal base excitations is presented. The system considered is an upright, circular cylindrical tank filled with an incompressible and inviscid liquid in which the density increases with the liquid depth. Only the impulsive components of response are considered in this study since the convective components can be computed by considering the tank to be rigid. It is shown in this study that for tanks with height-to-radius ratios between 0.3 and 1.2, the response quantities may be estimated utilizing the rigid tank solutions. Also, it is found that the pressure distribution along the tank wall is not sensitive to the detailed distribution function of the liquid density, and that the base shear and moments for the tank with nonuniform liquid can be estimated conservatively by assuming that the tank is filled with an equivalent uniform liquid density that preserves the total liquid weight. Finally, a simple equation for evaluating the fundamental natural frequency of the system is proposed

  18. Potential coherent structures in nonuniform streaming dusty magnetoplasma

    Energy Technology Data Exchange (ETDEWEB)

    Vranjes, Jovo [Inst. of Physics, Belgrade (Yugoslavia); Shukla, Padma Kant [Ruhr-Universitaet Bochum, Institut fuer Theoretische Physik IV, Bochum (Germany)

    2001-07-01

    In this paper we study linear and nonlinear behaviour of modified convective cells and vortices in nonuniform dusty magnetoplasmas with perpendicular and parallel to the magnetic field plasma flows, and in basically two different physical systems, with stationary (corresponding to the case of ShuklaVarma mode) and nonstationary (i.e. taking part in perturbations) dust particles. For the case of stationary dust, by choosing some specific profiles for the sheared plasma flow and the dust density, we analyze the eigenvalue equation in order to deduce the growth rate. A threshold is also obtained for the wavenumber separating spatially damped and convective modes (growing in space) due to its interaction with the sheared plasma flow. In the nonlinear regime, for both stationary and nonstationary dust particles, and in the presence of various plasma flows perpendicular and parallel to the magnetic field lines, a variety of possible nonlinear solutions, driven by the nonuniform shear flow and dust density is presented, i.e., single and double vortex chains accompanied with zonal flows, and tripolar and global vortices. (author)

  19. Electron Beam Dose Distribution in the Presence of Non-Uniform Magnetic Field

    Directory of Open Access Journals (Sweden)

    Mohamad Javad Tahmasebi-Birgani

    2014-04-01

    Full Text Available Introduction Magnetic fields are capable of altering the trajectory of electron beams andcan be used in radiation therapy.Theaim of this study was to produce regions with dose enhancement and reduction in the medium. Materials and Methods The NdFeB permanent magnets were arranged on the electron applicator in several configurations. Then, after the passage of the electron beams (9 and 15 MeV Varian 2100C/D through the non-uniform magnetic field, the Percentage Depth Dose(PDDs on central axis and dose profiles in three depths for each energy were measured in a 3D water phantom. Results For all magnet arrangements and for two different energies, the surface dose increment and shift in depth of maximum dose (dmax were observed. In addition, the pattern of dose distribution in buildup region was changed. Measurement of dose profile showed dose localization and spreading in some other regions. Conclusion The results of this study confirms that using magnetic field can alter the dose deposition patterns and as a result can produce dose enhancement as well as dose reduction in the medium using high-energy electron beams. These effects provide dose distribution with arbitrary shapes for use in radiation therapy.

  20. Modeling and Compensating Temperature-Dependent Non-Uniformity Noise in IR Microbolometer Cameras

    Directory of Open Access Journals (Sweden)

    Alejandro Wolf

    2016-07-01

    Full Text Available Images rendered by uncooled microbolometer-based infrared (IR cameras are severely degraded by the spatial non-uniformity (NU noise. The NU noise imposes a fixed-pattern over the true images, and the intensity of the pattern changes with time due to the temperature instability of such cameras. In this paper, we present a novel model and a compensation algorithm for the spatial NU noise and its temperature-dependent variations. The model separates the NU noise into two components: a constant term, which corresponds to a set of NU parameters determining the spatial structure of the noise, and a dynamic term, which scales linearly with the fluctuations of the temperature surrounding the array of microbolometers. We use a black-body radiator and samples of the temperature surrounding the IR array to offline characterize both the constant and the temperature-dependent NU noise parameters. Next, the temperature-dependent variations are estimated online using both a spatially uniform Hammerstein-Wiener estimator and a pixelwise least mean squares (LMS estimator. We compensate for the NU noise in IR images from two long-wave IR cameras. Results show an excellent NU correction performance and a root mean square error of less than 0.25 ∘ C, when the array’s temperature varies by approximately 15 ∘ C.

  1. Relaxing the electrostatic screening effect by patterning vertically-aligned silicon nanowire arrays into bundles for field emission application

    Energy Technology Data Exchange (ETDEWEB)

    Hung, Yung-Jr, E-mail: yungjrhung@gmail.com [Department of Electronic Engineering, National Taiwan University of Science and Technology, No. 43, Sec. 4, Keelung Rd., Taipei 106, Taiwan, ROC (China); Department of Photonics, National Sun Yat-sen University, No. 70, Lienhai Rd., Kaohsiung 80424, Taiwan, ROC (China); Graduate Institute of Electro-Optical Engineering, National Taiwan University of Science and Technology, No. 43, Sec. 4, Keelung Rd., Taipei 106, Taiwan, ROC (China); Lee, San-Liang [Department of Electronic Engineering, National Taiwan University of Science and Technology, No. 43, Sec. 4, Keelung Rd., Taipei 106, Taiwan, ROC (China); Graduate Institute of Electro-Optical Engineering, National Taiwan University of Science and Technology, No. 43, Sec. 4, Keelung Rd., Taipei 106, Taiwan, ROC (China); Beng, Looi Choon [Faculty of Engineering, Multimedia University, Jalan Multimedia, 63100 Cyberjaya, Selangor (Malaysia); Chang, Hsuan-Chen [Department of Electronic Engineering, National Taiwan University of Science and Technology, No. 43, Sec. 4, Keelung Rd., Taipei 106, Taiwan, ROC (China); Graduate Institute of Electro-Optical Engineering, National Taiwan University of Science and Technology, No. 43, Sec. 4, Keelung Rd., Taipei 106, Taiwan, ROC (China); Huang, Yung-Jui [Graduate Institute of Electro-Optical Engineering, National Taiwan University of Science and Technology, No. 43, Sec. 4, Keelung Rd., Taipei 106, Taiwan, ROC (China); Lee, Kuei-Yi; Huang, Ying-Sheng [Department of Electronic Engineering, National Taiwan University of Science and Technology, No. 43, Sec. 4, Keelung Rd., Taipei 106, Taiwan, ROC (China); Graduate Institute of Electro-Optical Engineering, National Taiwan University of Science and Technology, No. 43, Sec. 4, Keelung Rd., Taipei 106, Taiwan, ROC (China)

    2014-04-01

    Top-down fabrication strategies are proposed and demonstrated to realize arrays of vertically-aligned silicon nanowire bundles and bundle arrays of carbon nanotube–silicon nanowire (CNT–SiNW) heterojunctions, aiming for releasing the electrostatic screening effect and improving the field emission characteristics. The trade-off between the reduction in the electrostatic screening effect and the decrease of emission sites leads to an optimal SiNW bundle arrangement which enables the lowest turn-on electric field of 1.4 V/μm and highest emission current density of 191 μA/cm{sup 2} among all testing SiNW samples. Benefiting from the superior thermal and electrical properties of CNTs and the flexible patterning technologies available for SiNWs, bundle arrays of CNT–SiNW heterojunctions show improved and highly-uniform field emission with a lower turn-on electric field of 0.9 V/μm and higher emission current density of 5.86 mA/cm{sup 2}. The application of these materials and their corresponding fabrication approaches is not limited to the field emission but can be used for a variety of emerging fields like nanoelectronics, lithium-ion batteries, and solar cells. - Highlights: • Aligned silicon nanowire (SiNW) bundle arrays are realized with top-down methods. • Growing carbon nanotubes atop SiNW bundle arrays enable uniform field emission. • A turn-on field of 0.9 V/μm and an emission current of > 5 mA/cm{sup 2} are achieved.

  2. Scaled nonuniform Fourier transform for image reconstruction in swept source optical coherence tomography

    Science.gov (United States)

    Mezgebo, Biniyam; Nagib, Karim; Fernando, Namal; Kordi, Behzad; Sherif, Sherif

    2018-02-01

    Swept Source optical coherence tomography (SS-OCT) is an important imaging modality for both medical and industrial diagnostic applications. A cross-sectional SS-OCT image is obtained by applying an inverse discrete Fourier transform (DFT) to axial interferograms measured in the frequency domain (k-space). This inverse DFT is typically implemented as a fast Fourier transform (FFT) that requires the data samples to be equidistant in k-space. As the frequency of light produced by a typical wavelength-swept laser is nonlinear in time, the recorded interferogram samples will not be uniformly spaced in k-space. Many image reconstruction methods have been proposed to overcome this problem. Most such methods rely on oversampling the measured interferogram then use either hardware, e.g., Mach-Zhender interferometer as a frequency clock module, or software, e.g., interpolation in k-space, to obtain equally spaced samples that are suitable for the FFT. To overcome the problem of nonuniform sampling in k-space without any need for interferogram oversampling, an earlier method demonstrated the use of the nonuniform discrete Fourier transform (NDFT) for image reconstruction in SS-OCT. In this paper, we present a more accurate method for SS-OCT image reconstruction from nonuniform samples in k-space using a scaled nonuniform Fourier transform. The result is demonstrated using SS-OCT images of Axolotl salamander eggs.

  3. Incremental Ontology-Based Extraction and Alignment in Semi-structured Documents

    Science.gov (United States)

    Thiam, Mouhamadou; Bennacer, Nacéra; Pernelle, Nathalie; Lô, Moussa

    SHIRIis an ontology-based system for integration of semi-structured documents related to a specific domain. The system’s purpose is to allow users to access to relevant parts of documents as answers to their queries. SHIRI uses RDF/OWL for representation of resources and SPARQL for their querying. It relies on an automatic, unsupervised and ontology-driven approach for extraction, alignment and semantic annotation of tagged elements of documents. In this paper, we focus on the Extract-Align algorithm which exploits a set of named entity and term patterns to extract term candidates to be aligned with the ontology. It proceeds in an incremental manner in order to populate the ontology with terms describing instances of the domain and to reduce the access to extern resources such as Web. We experiment it on a HTML corpus related to call for papers in computer science and the results that we obtain are very promising. These results show how the incremental behaviour of Extract-Align algorithm enriches the ontology and the number of terms (or named entities) aligned directly with the ontology increases.

  4. Capillary self-alignment dynamics for R2R manufacturing of mesoscopic system-in-foil devices

    NARCIS (Netherlands)

    Arutinov, G.; Quintero, A.V.; Smits, E.C.P.; Remoortere, B. van; Brand, J. van den; Schoo, H.F.M.; Briand, D.; Rooij, N.F. de; Dietzel, A.H.

    2012-01-01

    This paper reports a study on the dynamics of foil-based functional component self-alignment onto patterned test substrates and its demonstration when integrating a flexible sensor onto a printed circuitry. We investigate the dependence of alignment time and final precision of stacking of mm- and

  5. Protostellar formation in rotating interstellar clouds. VI. Nonuniform initial conditions

    International Nuclear Information System (INIS)

    Boss, A.P.

    1987-01-01

    The collapse and fragmentation of rotating protostellar clouds is explored, starting from nonuniform density and nonuniform rotation initial conditions. Whether binary fragmentation occurs during the first dynamic collapse phase depends strongly on the initial density profile. Exponential clouds are only somewhat more resistant to fragmentation than uniform-density clouds, but power-law clouds do not undergo fragmentation for likely values of a relevant parameter. Because binary fragments start from profiles intermediate between uniform density and exponential clouds, minimum protostellar mass for population I stars should be increased to approximately 0.02 solar mass. The axisymmetric Terey et al. (1984) model should be stable with respect to nonaxisymmetric perturbations. Considering the observed binary frequency, collapse from power-law initial conditions appears to be less common than collapse from more uniform initial conditions. 34 references

  6. Study of submelt laser induced junction nonuniformities using Therma-Probe

    DEFF Research Database (Denmark)

    Rosseel, E.; Bogdanowicz, J; Clarysse, T.

    2010-01-01

    to standard and micro-four-point probe sheet resistance data, secondary ion mass spectrometry, and Hall measurements obtained during earlier studies. Besides the impact of the nonuniformities on the “conventional” thermal wave signal, they found a strong correlation to the dc reflectance of the probe laser...... both at macroscopic and microscopic levels. In this work, the authors present high resolution Therma-Probe® measurements to assess the junction nonuniformity on 0.5 keV boron junctions and zoom in on the effect of temperature variations and multiple subsequent laser scans. The results are compared...... (lambda = 675 nm). The dc probe reflectance is dominated by free carriers and is highly correlated to the sheet resistance both on blanket wafers and on real device wafers. ©2010 American Vacuum Society...

  7. Rapid detection, classification and accurate alignment of up to a million or more related protein sequences.

    Science.gov (United States)

    Neuwald, Andrew F

    2009-08-01

    The patterns of sequence similarity and divergence present within functionally diverse, evolutionarily related proteins contain implicit information about corresponding biochemical similarities and differences. A first step toward accessing such information is to statistically analyze these patterns, which, in turn, requires that one first identify and accurately align a very large set of protein sequences. Ideally, the set should include many distantly related, functionally divergent subgroups. Because it is extremely difficult, if not impossible for fully automated methods to align such sequences correctly, researchers often resort to manual curation based on detailed structural and biochemical information. However, multiply-aligning vast numbers of sequences in this way is clearly impractical. This problem is addressed using Multiply-Aligned Profiles for Global Alignment of Protein Sequences (MAPGAPS). The MAPGAPS program uses a set of multiply-aligned profiles both as a query to detect and classify related sequences and as a template to multiply-align the sequences. It relies on Karlin-Altschul statistics for sensitivity and on PSI-BLAST (and other) heuristics for speed. Using as input a carefully curated multiple-profile alignment for P-loop GTPases, MAPGAPS correctly aligned weakly conserved sequence motifs within 33 distantly related GTPases of known structure. By comparison, the sequence- and structurally based alignment methods hmmalign and PROMALS3D misaligned at least 11 and 23 of these regions, respectively. When applied to a dataset of 65 million protein sequences, MAPGAPS identified, classified and aligned (with comparable accuracy) nearly half a million putative P-loop GTPase sequences. A C++ implementation of MAPGAPS is available at http://mapgaps.igs.umaryland.edu. Supplementary data are available at Bioinformatics online.

  8. Enceladus's crust as a non-uniform thin shell: I tidal deformations

    Science.gov (United States)

    Beuthe, Mikael

    2018-03-01

    The geologic activity at Enceladus's south pole remains unexplained, though tidal deformations are probably the ultimate cause. Recent gravity and libration data indicate that Enceladus's icy crust floats on a global ocean, is rather thin, and has a strongly non-uniform thickness. Tidal effects are enhanced by crustal thinning at the south pole, so that realistic models of tidal tectonics and dissipation should take into account the lateral variations of shell structure. I construct here the theory of non-uniform viscoelastic thin shells, allowing for depth-dependent rheology and large lateral variations of shell thickness and rheology. Coupling to tides yields two 2D linear partial differential equations of the fourth order on the sphere which take into account self-gravity, density stratification below the shell, and core viscoelasticity. If the shell is laterally uniform, the solution agrees with analytical formulas for tidal Love numbers; errors on displacements and stresses are less than 5% and 15%, respectively, if the thickness is less than 10% of the radius. If the shell is non-uniform, the tidal thin shell equations are solved as a system of coupled linear equations in a spherical harmonic basis. Compared to finite element models, thin shell predictions are similar for the deformations due to Enceladus's pressurized ocean, but differ for the tides of Ganymede. If Enceladus's shell is conductive with isostatic thickness variations, surface stresses are approximately inversely proportional to the local shell thickness. The radial tide is only moderately enhanced at the south pole. The combination of crustal thinning and convection below the poles can amplify south polar stresses by a factor of 10, but it cannot explain the apparent time lag between the maximum plume brightness and the opening of tiger stripes. In a second paper, I will study the impact of a non-uniform crust on tidal dissipation.

  9. Additive non-uniform random sampling in superimposed fiber Bragg grating strain gauge

    Science.gov (United States)

    Ma, Y. C.; Liu, H. Y.; Yan, S. B.; Yang, Y. H.; Yang, M. W.; Li, J. M.; Tang, J.

    2013-05-01

    This paper demonstrates an additive non-uniform random sampling and interrogation method for dynamic and/or static strain gauge using a reflection spectrum from two superimposed fiber Bragg gratings (FBGs). The superimposed FBGs are designed to generate non-equidistant space of a sensing pulse train in the time domain during dynamic strain gauge. By combining centroid finding with smooth filtering methods, both the interrogation speed and accuracy are improved. A 1.9 kHz dynamic strain is measured by generating an additive non-uniform randomly distributed 2 kHz optical sensing pulse train from a mean 500 Hz triangular periodically changing scanning frequency.

  10. Non-Uniform Dose Mapping Controlled by Modulated Vertical and Horizontal Scans

    International Nuclear Information System (INIS)

    Ninomiya, S.; Kimura, Y.; Kudo, T.; Ochi, A.; Toda, R.; Tsukihara, M.; Sato, F.; Fuse, G.; Ueno, K.; Sugitani, M.

    2008-01-01

    Since geometries of semi-conductor devices continue to shrink, the requirement for each process becomes severer to keep uniformity of electrical parameters of the semi-conductor devices. A larger wafer also causes larger variations. Thus it has been strongly required for ion implantation process to compensate for the variations from other processes because of its good dose controllability. A newly developed mapping of intentional non-uniform dosage system, which is named 'MIND system', is implemented in SEN's single-wafer-type implanters. The MIND system controls both horizontal and vertical scan speed simultaneously. Intentional two-dimensional non-uniform profiles of sheet resistance, such as concentric and eccentric profiles, are obtained only by single-step ion implantation.

  11. Low-frequency electrostatic dust-modes in a non-uniform

    Indian Academy of Sciences (India)

    A self-consistent and general description of obliquely propagating low-frequency electrostatic dust-modes in a non-uniform magnetized dusty plasma system has been presented. A number of different situations, which correspond to different low-frequency electrostatic dust-modes, namely, dust-acoustic mode, dust-drift ...

  12. Three dimensional extrusion printing induces polymer molecule alignment and cell organization within engineered cartilage.

    Science.gov (United States)

    Guo, Ting; Ringel, Julia P; Lim, Casey G; Bracaglia, Laura G; Noshin, Maeesha; Baker, Hannah B; Powell, Douglas A; Fisher, John P

    2018-04-16

    Proper cell-material interactions are critical to remain cell function and thus successful tissue regeneration. Many fabrication processes have been developed to create microenvironments to control cell attachment and organization on a three-dimensional (3D) scaffold. However, these approaches often involve heavy engineering and only the surface layer can be patterned. We found that 3D extrusion based printing at high temperature and pressure will result an aligned effect on the polymer molecules, and this molecular arrangement will further induce the cell alignment and different differentiation capacities. In particular, articular cartilage tissue is known to have zonal collagen fiber and cell orientation to support different functions, where collagen fibers and chondrocytes align parallel, randomly, and perpendicular, respectively, to the surface of the joint. Therefore, cell alignment was evaluated in a cartilage model in this study. We used small angle X-ray scattering analysis to substantiate the polymer molecule alignment phenomenon. The cellular response was evaluated both in vitro and in vivo. Seeded mesenchymal stem cells (MSCs) showed different morphology and orientation on scaffolds, as a combined result of polymer molecule alignment and printed scaffold patterns. Gene expression results showed improved superficial zonal chondrogenic marker expression in parallel-aligned group. The cell alignment was successfully maintained in the animal model after 7 days with distinct MSC morphology between the casted and parallel printed scaffolds. This 3D printing induced polymer and cell alignment will have a significant impact on developing scaffold with controlled cell-material interactions for complex tissue engineering while avoiding complicated surface treatment, and therefore provides new concept for effective tissue repairing in future clinical applications. © 2018 Wiley Periodicals, Inc. J Biomed Mater Res Part A, 2018. © 2018 Wiley Periodicals, Inc.

  13. PF2fit: Polar Fast Fourier Matched Alignment of Atomistic Structures with 3D Electron Microscopy Maps.

    Directory of Open Access Journals (Sweden)

    Radhakrishna Bettadapura

    2015-10-01

    Full Text Available There continue to be increasing occurrences of both atomistic structure models in the PDB (possibly reconstructed from X-ray diffraction or NMR data, and 3D reconstructed cryo-electron microscopy (3D EM maps (albeit at coarser resolution of the same or homologous molecule or molecular assembly, deposited in the EMDB. To obtain the best possible structural model of the molecule at the best achievable resolution, and without any missing gaps, one typically aligns (match and fits the atomistic structure model with the 3D EM map. We discuss a new algorithm and generalized framework, named PF(2 fit (Polar Fast Fourier Fitting for the best possible structural alignment of atomistic structures with 3D EM. While PF(2 fit enables only a rigid, six dimensional (6D alignment method, it augments prior work on 6D X-ray structure and 3D EM alignment in multiple ways: Scoring. PF(2 fit includes a new scoring scheme that, in addition to rewarding overlaps between the volumes occupied by the atomistic structure and 3D EM map, rewards overlaps between the volumes complementary to them. We quantitatively demonstrate how this new complementary scoring scheme improves upon existing approaches. PF(2 fit also includes two scoring functions, the non-uniform exterior penalty and the skeleton-secondary structure score, and implements the scattering potential score as an alternative to traditional Gaussian blurring. Search. PF(2 fit utilizes a fast polar Fourier search scheme, whose main advantage is the ability to search over uniformly and adaptively sampled subsets of the space of rigid-body motions. PF(2 fit also implements a new reranking search and scoring methodology that considerably improves alignment metrics in results obtained from the initial search.

  14. Curve aligning approach for gait authentication based on a wearable accelerometer

    International Nuclear Information System (INIS)

    Sun, Hu; Yuao, Tao

    2012-01-01

    Gait authentication based on a wearable accelerometer is a novel biometric which can be used for identity identification, medical rehabilitation and early detection of neurological disorders. The method for matching gait patterns tells heavily on authentication performances. In this paper, curve aligning is introduced as a new method for matching gait patterns and it is compared with correlation and dynamic time warping (DTW). A support vector machine (SVM) is proposed to fuse pattern-matching methods in a decision level. Accelerations collected from ankles of 22 walking subjects are processed for authentications in our experiments. The fusion of curve aligning with backward–forward accelerations and DTW with vertical accelerations promotes authentication performances substantially and consistently. This fusion algorithm is tested repeatedly. Its mean and standard deviation of equal error rates are 0.794% and 0.696%, respectively, whereas among all presented non-fusion algorithms, the best one shows an EER of 3.03%. (paper)

  15. A two-dimensional finite element model of front surface current flow in cells under non-uniform, concentrated illumination

    Energy Technology Data Exchange (ETDEWEB)

    Mellor, A.; Domenech-Garret, J.L.; Chemisana, D.; Rosell, J.I. [Departament de Medi Ambient i C.S., University of Lleida, Av. Alcalde Rovira Roure 191, E25198 (Spain)

    2009-09-15

    A two-dimensional finite element model of current flow in the front surface of a PV cell is presented. In order to validate this model we perform an experimental test. Later, particular attention is paid to the effects of non-uniform illumination in the finger direction which is typical in a linear concentrator system. Fill factor, open circuit voltage and efficiency are shown to decrease with increasing degree of non-uniform illumination. It is shown that these detrimental effects can be mitigated significantly by reoptimization of the number of front surface metallization fingers to suit the degree of non-uniformity. The behavior of current flow in the front surface of a cell operating at open circuit voltage under non-uniform illumination is discussed in detail. (author)

  16. Hot deformation behavior and microstructure evolution of TA15 titanium alloy with nonuniform microstructure

    Energy Technology Data Exchange (ETDEWEB)

    Gao, Pengfei; Zhan, Mei, E-mail: zhanmei@nwpu.edu.cn; Fan, Xiaoguang; Lei, Zhenni; Cai, Yang

    2017-03-24

    The flow behavior and microstructure evolution of a near α titanium alloy with nonuniform microstructure during hot deformation were studied by isothermal compression test and electron backscatter diffraction technique. It is found that the nonuniform microstructure prior to deformation consists of equiaxed α, lamellar α in the colony form and β phase, and the α colony keeps the Burgers orientation relationship with β phase. The flow stress of nonuniform microstructure exhibits significant flow softening after reaching the peak stress at a low strain, which is similar to the lamellar microstructure. Nevertheless, the existence of equiaxed α in nonuniform microstructure makes its flow stress and softening rate be lower than the lamellar microstructure. During deformation, the lamellar α undertakes most of the deformation and turns to be rotated, bended and globularized. Moreover, these phenomena exhibit significant heterogeneity due to the orientation dependence of the deformation of lamellar α. The continuous dynamic recrystallization and bending of lamellar α lead to the “fragmentation” during globularization of lamellar α. The bending of lamellar α is speculated as a form of plastic buckling, because the bending of lamellar α almost proceed in the manner of “rigid rotation” and presents opposite bending directions for the adjacent colonies.

  17. CHF multiplier of subcooled flow boiling for non-uniform heating conditions in swirl tube

    International Nuclear Information System (INIS)

    Inasaka, F.; Nariai, H.

    1994-01-01

    The high heat flux components of fusion reactors, such as divertor plates and beam dumps of neutral beam injectors, are estimated to be subjected to very high heat loads more than 10 MW/m 2 . Critical heat flux (CHF), which determines the upper limit of heat removal, is one of the most important problems in designing cooling systems. For practical applications in cooling systems, subcooled flow boiling in water combined with swirl-flow in tubes with internal twisted tape is thought to be the most superior for CHF characteristics in fusion reactor components, heat by irradiation comes in from one side of the wall, and cooling channel is then under circumferentially non-uniform heating condition. Authors have conducted the experiments on the CHF with internal twisted tapes under circumferentially non-uniform heating conditions and showed that when the intensity of non-uniformity increased, q cH (peak heat flux at burnout under nonuniform heating condition) in tube with internal twisted tape increased above the q c,unif (CHF under uniform heating condition), though the average qualities were the same for both cases. They also showed that this CHF enhancement was not seen in smooth tubes without tape under the same average qualities

  18. Measurement of reactivity effect caused by nonuniform fuel distribution

    International Nuclear Information System (INIS)

    Yamane, Yoshihiro; Hirano, Yasushi; Yasui, Hazime; Nishina, Kojiro; Shiroya, Seiji

    1991-01-01

    A reactivity effect due to a spatial variation of nuclear fuel concentration is an important problem in a reprocessing plant. To estimate this reactivity effect theoretically, the ''Goertzel's necessary condition, and th Fuel Importance'' theory have been proposed. In order to verify these theories, we have performed systematic measurements of reactivity effect due to the nonuniformity in the fuel distribution within the Kyoto University Critical Assembly. Neutron flux distribution and Fuel Importance distribution were also determined. A nonuniform assembly whose fuel concentration in the center region was 40% higher than the uniform one was found to have an excess reactivity of 0.3%Δk/k, with the same total uranium mass for which the uniform assembly was just critical. Moreover, its spatial distribution of thermal neutron flux and of Fuel Importance were more flat than those of the uniform assembly, as expected by the Goertzel's condition and the Fuel Importance theory. (Author)

  19. Nonuniform code concatenation for universal fault-tolerant quantum computing

    Science.gov (United States)

    Nikahd, Eesa; Sedighi, Mehdi; Saheb Zamani, Morteza

    2017-09-01

    Using transversal gates is a straightforward and efficient technique for fault-tolerant quantum computing. Since transversal gates alone cannot be computationally universal, they must be combined with other approaches such as magic state distillation, code switching, or code concatenation to achieve universality. In this paper we propose an alternative approach for universal fault-tolerant quantum computing, mainly based on the code concatenation approach proposed in [T. Jochym-O'Connor and R. Laflamme, Phys. Rev. Lett. 112, 010505 (2014), 10.1103/PhysRevLett.112.010505], but in a nonuniform fashion. The proposed approach is described based on nonuniform concatenation of the 7-qubit Steane code with the 15-qubit Reed-Muller code, as well as the 5-qubit code with the 15-qubit Reed-Muller code, which lead to two 49-qubit and 47-qubit codes, respectively. These codes can correct any arbitrary single physical error with the ability to perform a universal set of fault-tolerant gates, without using magic state distillation.

  20. Measurement of fuel importance distribution in non-uniformly distributed fuel systems

    International Nuclear Information System (INIS)

    Yamane, Yoshihiro; Hirano, Yasushi; Yasui, Hazime; Izima, Kazunori; Shiroya, Seiji; Kobayashi, Keiji.

    1995-01-01

    A reactivity effect due to a spatial variation of nuclear fuel concentration is an important problem for nuclear criticality safety in a reprocessing plant. As a theory estimating this reactivity effect, the Goertzel and fuel importance theories are well known. It has been shown that the Goertzel's theory is valid in the range of our experiments based on measurements of reactivity effect and thermal neutron flux in non-uniformly distributed fuel systems. On the other hand, there have been no reports concerning systematic experimental studies on the flatness of fuel importance which is a more general index than the Goertzel's theory. It is derived from the perturbation theory that the fuel importance is proportional to the reactivity change resulting from a change of small amount of fuel mass. Using a uniform and three kinds of nonuniform fuel systems consisting of 93.2% enriched uranium plates and polyethylene plates, the fuel importance distributions were measured. As a result, it was found experimentally that the fuel importance distribution became flat, as its reactivity effect became large. Therefore it was concluded that the flatness of fuel importance distribution is the useful index for estimating reactivity effect of non-uniformly distributed fuel system. (author)

  1. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    G.Gomez

    2010-01-01

    Most of the work in muon alignment since December 2009 has focused on the geometry reconstruction from the optical systems and improvements in the internal alignment of the DT chambers. The barrel optical alignment system has progressively evolved from reconstruction of single active planes to super-planes (December 09) to a new, full barrel reconstruction. Initial validation studies comparing this full barrel alignment at 0T with photogrammetry provide promising results. In addition, the method has been applied to CRAFT09 data, and the resulting alignment at 3.8T yields residuals from tracks (extrapolated from the tracker) which look smooth, suggesting a good internal barrel alignment with a small overall offset with respect to the tracker. This is a significant improvement, which should allow the optical system to provide a start-up alignment for 2010. The end-cap optical alignment has made considerable progress in the analysis of transfer line data. The next set of alignment constants for CSCs will there...

  2. Photo polymerization-induced vertical phase separation and homeotropic alignment in liquid crystal and polymer mixtures

    International Nuclear Information System (INIS)

    Kang, Hyo; Joo, Sangwoo; Kang, Daeseung

    2012-01-01

    We presented a novel method for the homeotropic alignment of LC by using the irradiation of UV light on the LC/NOA65 mixture cell, in which the photo-initiated-polymerization-induced phase separation lowers the surface energy. When the amount of polymer content is sufficiently small, the gravel and network patterns were formed at the substrates via the vertical phase separation. We found that surface roughness plays an important role in the formation of the homeotropic alignment of LC. We also observed the alignment transition of the cells by varying the mixing ratio of LC/NOA65 or the UV radiation time. Furthermore, the present proposed method has great potential for application in display devices. For decades, studies on the alignment of liquid crystal (LC) molecules have been of significant interest due to their immediate applications for display devices and the intriguing physiochemical properties they exhibit at the surface of mixtures. Usually, homeotropic (or vertical) alignment, in which the long axes of the LC molecules are oriented in a direction perpendicular to the surface, is achieved by using surfactants such as lecithin, silanes or polyimide. Recently homeotropic alignment of liquid crystal molecules was achieved by irradiating photosensitive polymers, by doping nanoparticles into LC, by utilizing nano/micro patterns, or by incorporating self-assembled monolayers (SAMs). However, a clear understanding about the alignment mechanism is still elusive. In this paper, we report a novel method for homeotropic alignment of LC by utilizing the phase separation of LC/polymer mixtures

  3. Generation and application of Bessel beam in alignment works

    International Nuclear Information System (INIS)

    Gale, D. M.

    2009-01-01

    The divergence of a Gaussian laser beam is a limiting factor for optical alignment tasks at large distances. Bessel beams have almost zero divergence but are still not widely used. We discuss the construction of an alignment telescope based on Bessel beam generation using a commercial laser diode module. The Bessel beam is generated with conical or plano-convex lenses, and projected using a commercial CCD camera lens to extend the useful range of the beam. Our Bessel beams have diameters of between 0.5 - 1mm over beam lengths of 15m, representing a six-fold improvement compared to Gaussian beams, while the transverse beam structure (Bessel pattern) provides an excellent alignment aid for use with beam target. Another advantage of Bessel beams is their self-regeneration property, which allows the use of multiple beam targets with minimum beam degradation. We are using our crosshair targets with crosshair targets to align optical components in a large astronomical telescope, and can achieve precisions of tens of microns over distances of 20m using purely visual methods. (Author)

  4. Micropatterning stretched and aligned DNA for sequence-specific nanolithography

    Science.gov (United States)

    Petit, Cecilia Anna Paulette

    Techniques for fabricating nanostructured materials can be categorized as either "top-down" or "bottom-up". Top-down techniques use lithography and contact printing to create patterned surfaces and microfluidic channels that can corral and organize nanoscale structures, such as molecules and nanorods in contrast; bottom-up techniques use self-assembly or molecular recognition to direct the organization of materials. A central goal in nanotechnology is the integration of bottom-up and top-down assembly strategies for materials development, device design; and process integration. With this goal in mind, we have developed strategies that will allow this integration by using DNA as a template for nanofabrication; two top-down approaches allow the placement of these templates, while the bottom-up technique uses the specific sequence of bases to pattern materials along each strand of DNA. Our first top-down approach, termed combing of molecules in microchannels (COMMIC), produces microscopic patterns of stretched and aligned molecules of DNA on surfaces. This process consists of passing an air-water interface over end adsorbed molecules inside microfabricated channels. The geometry of the microchannel directs the placement of the DNA molecules, while the geometry of the airwater interface directs the local orientation and curvature of the molecules. We developed another top-down strategy for creating micropatterns of stretched and aligned DNA using surface chemistry. Because DNA stretching occurs on hydrophobic surfaces, this technique uses photolithography to pattern vinyl-terminated silanes on glass When these surface-, are immersed in DNA solution, molecules adhere preferentially to the silanized areas. This approach has also proven useful in patterning protein for cell adhesion studies. Finally, we describe the use of these stretched and aligned molecules of DNA as templates for the subsequent bottom-up construction of hetero-structures through hybridization

  5. Hydrodynamic Equations for Flocking Models without Velocity Alignment

    Science.gov (United States)

    Peruani, Fernando

    2017-10-01

    The spontaneous emergence of collective motion patterns is usually associated with the presence of a velocity alignment mechanism that mediates the interactions among the moving individuals. Despite of this widespread view, it has been shown recently that several flocking behaviors can emerge in the absence of velocity alignment and as a result of short-range, position-based, attractive forces that act inside a vision cone. Here, we derive the corresponding hydrodynamic equations of a microscopic position-based flocking model, reviewing and extending previous reported results. In particular, we show that three distinct macroscopic collective behaviors can be observed: i) the coarsening of aggregates with no orientational order, ii) the emergence of static, elongated nematic bands, and iii) the formation of moving, locally polar structures, which we call worms. The derived hydrodynamic equations indicate that active particles interacting via position-based interactions belong to a distinct class of active systems fundamentally different from other active systems, including velocity-alignment-based flocking systems.

  6. Inkjet printing of aligned single-walled carbon-nanotube thin films

    Science.gov (United States)

    Takagi, Yuki; Nobusa, Yuki; Gocho, Shota; Kudou, Hikaru; Yanagi, Kazuhiro; Kataura, Hiromichi; Takenobu, Taishi

    2013-04-01

    We report a method for the inkjet printing of aligned single-walled carbon-nanotube (SWCNT) films by combining inkjet technology with the strong wettability contrast between hydrophobic and hydrophilic areas based on the patterning of self-assembled monolayers. Both the drying process control using the strong wettability boundary and the coffee-stain effect strongly promote the aggregation of SWCNTs along the contact line of a SWCNT ink droplet, thereby demonstrating our achievement of inkjet-printed aligned SWCNT films. This method could open routes for developing high-performance and environmentally friendly SWCNT printed electronics.

  7. Maximum Likelihood DOA Estimation of Multiple Wideband Sources in the Presence of Nonuniform Sensor Noise

    Directory of Open Access Journals (Sweden)

    K. Yao

    2007-12-01

    Full Text Available We investigate the maximum likelihood (ML direction-of-arrival (DOA estimation of multiple wideband sources in the presence of unknown nonuniform sensor noise. New closed-form expression for the direction estimation Cramér-Rao-Bound (CRB has been derived. The performance of the conventional wideband uniform ML estimator under nonuniform noise has been studied. In order to mitigate the performance degradation caused by the nonuniformity of the noise, a new deterministic wideband nonuniform ML DOA estimator is derived and two associated processing algorithms are proposed. The first algorithm is based on an iterative procedure which stepwise concentrates the log-likelihood function with respect to the DOAs and the noise nuisance parameters, while the second is a noniterative algorithm that maximizes the derived approximately concentrated log-likelihood function. The performance of the proposed algorithms is tested through extensive computer simulations. Simulation results show the stepwise-concentrated ML algorithm (SC-ML requires only a few iterations to converge and both the SC-ML and the approximately-concentrated ML algorithm (AC-ML attain a solution close to the derived CRB at high signal-to-noise ratio.

  8. Numerical simulation of effect of laser nonuniformity in interior interface

    International Nuclear Information System (INIS)

    Yu Xiaojin; Wu Junfeng; Ye Wenhua

    2007-01-01

    Using the LARED-S code and referring to the NIF direct-drive DT ignition target, the effect of laser nonuniformity on the interior interface in direct-drive spherical implosion with high convergence ratio was numerically studied. The two-dimensional results show that the implosion with high convergence ratio is sensitive to the nonuniformity of driving laser, and the growth of hydrodynamic instability on interior interface destroys the symmetric-drive and reduces the volume of central hot spot observably. Taking the limit that perturbation amplitude is equal to 1/3 radius of central hot spot, the simulation also gives that the requirements for the laser uniformity for different mode number(less than 12) on simple physical model are between 2.5% -0.25%, and the modes between 8-10 have the most rigorous requirement which is about 0.25%. (authors)

  9. The non-uniformity correction factor for the cylindrical ionization chambers in dosimetry of an HDR 192Ir brachytherapy source

    International Nuclear Information System (INIS)

    Majumdar, Bishnu; Patel, Narayan Prasad; Vijayan, V.

    2006-01-01

    The aim of this study is to derive the non-uniformity correction factor for the two therapy ionization chambers for the dose measurement near the brachytherapy source. The two ionization chambers of 0.6 cc and 0.1 cc volume were used. The measurement in air was performed for distances between 0.8 cm and 20 cm from the source in specially designed measurement jig. The non-uniformity correction factors were derived from the measured values. The experimentally derived factors were compared with the theoretically calculated non-uniformity correction factors and a close agreement was found between these two studies. The experimentally derived non-uniformity correction factor supports the anisotropic theory. (author)

  10. Bridge density functional approximation for non-uniform hard core repulsive Yukawa fluid

    International Nuclear Information System (INIS)

    Zhou Shiqi

    2008-01-01

    In this work, a bridge density functional approximation (BDFA) (J. Chem. Phys. 112, 8079 (2000)) for a non-uniform hard-sphere fluid is extended to a non-uniform hard-core repulsive Yukawa (HCRY) fluid. It is found that the choice of a bulk bridge functional approximation is crucial for both a uniform HCRY fluid and a non-uniform HCRY fluid. A new bridge functional approximation is proposed, which can accurately predict the radial distribution function of the bulk HCRY fluid. With the new bridge functional approximation and its associated bulk second order direct correlation function as input, the BDFA can be used to well calculate the density profile of the HCRY fluid subjected to the influence of varying external fields, and the theoretical predictions are in good agreement with the corresponding simulation data. The calculated results indicate that the present BDFA captures quantitatively the phenomena such as the coexistence of solid-like high density phase and low density gas phase, and the adsorption properties of the HCRY fluid, which qualitatively differ from those of the fluids combining both hard-core repulsion and an attractive tail. (condensed matter: structure, thermal and mechanical properties)

  11. Dynamic behaviour of non-uniform Bernoulli-Euler beams subjected ...

    African Journals Online (AJOL)

    This paper investigates the dynamics behaviour of non-uniform Bernoulli-Euler beams subjected to concentrated loads ravelling at variable velocities. The solution technique is based on the Generalized Galerkin Method and the use of the generating function of the Bessel function type. The results show that, for all the ...

  12. Sensing Characteristics of A Precision Aligner Using Moire Gratings for Precision Alignment System

    Institute of Scientific and Technical Information of China (English)

    ZHOU Lizhong; Hideo Furuhashi; Yoshiyuki Uchida

    2001-01-01

    Sensing characteristics of a precision aligner using moire gratings for precision alignment sysem has been investigated. A differential moire alignment system and a modified alignment system were used. The influence of the setting accuracy of the gap length and inclination of gratings on the alignment accuracy has been studied experimentally and theoretically. Setting accuracy of the gap length less than 2.5μm is required in modified moire alignment. There is no influence of the gap length on the alignment accuracy in the differential alignment system. The inclination affects alignment accuracies in both differential and modified moire alignment systems.

  13. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    Z. Szillasi and G. Gomez.

    2013-01-01

    When CMS is opened up, major components of the Link and Barrel Alignment systems will be removed. This operation, besides allowing for maintenance of the detector underneath, is needed for making interventions that will reinforce the alignment measurements and make the operation of the alignment system more reliable. For that purpose and also for their general maintenance and recalibration, the alignment components will be transferred to the Alignment Lab situated in the ISR area. For the track-based alignment, attention is focused on the determination of systematic uncertainties, which have become dominant, since now there is a large statistics of muon tracks. This will allow for an improved Monte Carlo misalignment scenario and updated alignment position errors, crucial for high-momentum muon analysis such as Z′ searches.

  14. Many-junction photovoltaic device performance under non-uniform high-concentration illumination

    Science.gov (United States)

    Valdivia, Christopher E.; Wilkins, Matthew M.; Chahal, Sanmeet S.; Proulx, Francine; Provost, Philippe-Olivier; Masson, Denis P.; Fafard, Simon; Hinzer, Karin

    2017-09-01

    A parameterized 3D distributed circuit model was developed to calculate the performance of III-V solar cells and photonic power converters (PPC) with a variable number of epitaxial vertically-stacked pn junctions. PPC devices are designed with many pn junctions to realize higher voltages and to operate under non-uniform illumination profiles from a laser or LED. Performance impacts of non-uniform illumination were greatly reduced with increasing number of junctions, with simulations comparing PPC devices with 3 to 20 junctions. Experimental results using Azastra Opto's 12- and 20-junction PPC illuminated by an 845 nm diode laser show high performance even with a small gap between the PPC and optical fiber output, until the local tunnel junction limit is reached.

  15. Triangular Alignment (TAME). A Tensor-based Approach for Higher-order Network Alignment

    Energy Technology Data Exchange (ETDEWEB)

    Mohammadi, Shahin [Purdue Univ., West Lafayette, IN (United States); Gleich, David F. [Purdue Univ., West Lafayette, IN (United States); Kolda, Tamara G. [Sandia National Laboratories (SNL-CA), Livermore, CA (United States); Grama, Ananth [Purdue Univ., West Lafayette, IN (United States)

    2015-11-01

    Network alignment is an important tool with extensive applications in comparative interactomics. Traditional approaches aim to simultaneously maximize the number of conserved edges and the underlying similarity of aligned entities. We propose a novel formulation of the network alignment problem that extends topological similarity to higher-order structures and provide a new objective function that maximizes the number of aligned substructures. This objective function corresponds to an integer programming problem, which is NP-hard. Consequently, we approximate this objective function as a surrogate function whose maximization results in a tensor eigenvalue problem. Based on this formulation, we present an algorithm called Triangular AlignMEnt (TAME), which attempts to maximize the number of aligned triangles across networks. We focus on alignment of triangles because of their enrichment in complex networks; however, our formulation and resulting algorithms can be applied to general motifs. Using a case study on the NAPABench dataset, we show that TAME is capable of producing alignments with up to 99% accuracy in terms of aligned nodes. We further evaluate our method by aligning yeast and human interactomes. Our results indicate that TAME outperforms the state-of-art alignment methods both in terms of biological and topological quality of the alignments.

  16. Additive non-uniform random sampling in superimposed fiber Bragg grating strain gauge

    International Nuclear Information System (INIS)

    Ma, Y C; Liu, H Y; Yan, S B; Li, J M; Tang, J; Yang, Y H; Yang, M W

    2013-01-01

    This paper demonstrates an additive non-uniform random sampling and interrogation method for dynamic and/or static strain gauge using a reflection spectrum from two superimposed fiber Bragg gratings (FBGs). The superimposed FBGs are designed to generate non-equidistant space of a sensing pulse train in the time domain during dynamic strain gauge. By combining centroid finding with smooth filtering methods, both the interrogation speed and accuracy are improved. A 1.9 kHz dynamic strain is measured by generating an additive non-uniform randomly distributed 2 kHz optical sensing pulse train from a mean 500 Hz triangular periodically changing scanning frequency. (paper)

  17. An Improved Rate-Transient Analysis Model of Multi-Fractured Horizontal Wells with Non-Uniform Hydraulic Fracture Properties

    Directory of Open Access Journals (Sweden)

    Youwei He

    2018-02-01

    Full Text Available Although technical advances in hydraulically fracturing and drilling enable commercial production from tight reservoirs, oil/gas recovery remains at a low level. Due to the technical and economic limitations of well-testing operations in tight reservoirs, rate-transient analysis (RTA has become a more attractive option. However, current RTA models hardly consider the effect of the non-uniform production on rate decline behaviors. In fact, PLT results demonstrate that production profile is non-uniform. To fill this gap, this paper presents an improved RTA model of multi-fractured horizontal wells (MFHWs to investigate the effects of non-uniform properties of hydraulic fractures (production of fractures, fracture half-length, number of fractures, fracture conductivity, and vertical permeability on rate transient behaviors through the diagnostic type curves. Results indicate obvious differences on the rate decline curves among the type curves of uniform properties of fractures (UPF and non-uniform properties of fractures (NPF. The use of dimensionless production integral derivative curve magnifies the differences so that we can diagnose the phenomenon of non-uniform production. Therefore, it’s significant to incorporate the effects of NPF into the RDA models of MFHWs, and the model proposed in this paper enables us to better evaluate well performance based on long-term production data.

  18. A Method of Sky Ripple Residual Nonuniformity Reduction for a Cooled Infrared Imager and Hardware Implementation.

    Science.gov (United States)

    Li, Yiyang; Jin, Weiqi; Li, Shuo; Zhang, Xu; Zhu, Jin

    2017-05-08

    Cooled infrared detector arrays always suffer from undesired ripple residual nonuniformity (RNU) in sky scene observations. The ripple residual nonuniformity seriously affects the imaging quality, especially for small target detection. It is difficult to eliminate it using the calibration-based techniques and the current scene-based nonuniformity algorithms. In this paper, we present a modified temporal high-pass nonuniformity correction algorithm using fuzzy scene classification. The fuzzy scene classification is designed to control the correction threshold so that the algorithm can remove ripple RNU without degrading the scene details. We test the algorithm on a real infrared sequence by comparing it to several well-established methods. The result shows that the algorithm has obvious advantages compared with the tested methods in terms of detail conservation and convergence speed for ripple RNU correction. Furthermore, we display our architecture with a prototype built on a Xilinx Virtex-5 XC5VLX50T field-programmable gate array (FPGA), which has two advantages: (1) low resources consumption; and (2) small hardware delay (less than 10 image rows). It has been successfully applied in an actual system.

  19. Experimental observation of the inductive electric field and related plasma nonuniformity in high frequency capacitive discharge

    International Nuclear Information System (INIS)

    Ahn, S. K.; Chang, H. Y.

    2008-01-01

    To elucidate plasma nonuniformity in high frequency capacitive discharges, Langmuir probe and B-dot probe measurements were carried out in the radial direction in a cylindrical capacitive discharge driven at 90 MHz with argon pressures of 50 and 400 mTorr. Through the measurements, a significant inductive electric field (i.e., time-varying magnetic field) was observed at the radial edge, and it was found that the inductive electric field creates strong plasma nonuniformity at high pressure operation. The plasma nonuniformity at high pressure operation is physically similar to the E-H mode transition typically observed in inductive discharges. This result agrees well with the theories of electromagnetic effects in large area and/or high frequency capacitive discharges

  20. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    G. Gomez and J. Pivarski

    2011-01-01

    Alignment efforts in the first few months of 2011 have shifted away from providing alignment constants (now a well established procedure) and focussed on some critical remaining issues. The single most important task left was to understand the systematic differences observed between the track-based (TB) and hardware-based (HW) barrel alignments: a systematic difference in r-φ and in z, which grew as a function of z, and which amounted to ~4-5 mm differences going from one end of the barrel to the other. This difference is now understood to be caused by the tracker alignment. The systematic differences disappear when the track-based barrel alignment is performed using the new “twist-free” tracker alignment. This removes the largest remaining source of systematic uncertainty. Since the barrel alignment is based on hardware, it does not suffer from the tracker twist. However, untwisting the tracker causes endcap disks (which are aligned ...

  1. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    Gervasio Gomez

    The main progress of the muon alignment group since March has been in the refinement of both the track-based alignment for the DTs and the hardware-based alignment for the CSCs. For DT track-based alignment, there has been significant improvement in the internal alignment of the superlayers inside the DTs. In particular, the distance between superlayers is now corrected, eliminating the residual dependence on track impact angles, and good agreement is found between survey and track-based corrections. The new internal geometry has been approved to be included in the forthcoming reprocessing of CRAFT samples. The alignment of DTs with respect to the tracker using global tracks has also improved significantly, since the algorithms use the latest B-field mapping, better run selection criteria, optimized momentum cuts, and an alignment is now obtained for all six degrees of freedom (three spatial coordinates and three rotations) of the aligned DTs. This work is ongoing and at a stage where we are trying to unders...

  2. Resource reflecting functor and its application to non-uniformity

    Science.gov (United States)

    Srinivasan, Priyaa Varshinee; Sanders, Barry C.; Cockett, Robin

    In this work, we formulate an abstract approach to translate one resource theory to another. We adopt the notion of resource theories as partitioned symmetric monoidal categories and extend this notion by considering resource-reflecting functors between resource theories. A functor F is a structure preserving map and F is said to be resource-reflecting if F (g) being a free transformation implies that the transformation g is also free. Thus, a resource-reflecting functor demonstrates that the existence of a free transformation between two resources in the domain resource theory can be inferred from the existence of a free transformation in the codomain theory. As an example, we construct one such functor from the resource theory of non-uniformity to a resource theory of majorization. Thus, our work lays a foundation for expressing similarities between resource theories and for applying results achieved in one resource theory to another. An abstract approach to the translation between theories enables common patterns to be identified between resource theories thereby reducing the effort of solving the same problem for different theories. BCS appreciates financial support from Alberta Innovates, NSERC, China's 1000 Talent Plan and the IQIM, which is an NSF Physics Frontiers Centre (NSF Grant PHY-1125565) with support of the Gordon and Betty Moore Foundation (GBMF-2644).

  3. A Single Image Deblurring Algorithm for Nonuniform Motion Blur Using Uniform Defocus Map Estimation

    Directory of Open Access Journals (Sweden)

    Chia-Feng Chang

    2017-01-01

    Full Text Available One of the most common artifacts in digital photography is motion blur. When capturing an image under dim light by using a handheld camera, the tendency of the photographer’s hand to shake causes the image to blur. In response to this problem, image deblurring has become an active topic in computational photography and image processing in recent years. From the view of signal processing, image deblurring can be reduced to a deconvolution problem if the kernel function of the motion blur is assumed to be shift invariant. However, the kernel function is not always shift invariant in real cases; for example, in-plane rotation of a camera or a moving object can blur different parts of an image according to different kernel functions. An image that is degraded by multiple blur kernels is called a nonuniform blur image. In this paper, we propose a novel single image deblurring algorithm for nonuniform motion blur images that is blurred by moving object. First, a proposed uniform defocus map method is presented for measurement of the amounts and directions of motion blur. These blurred regions are then used to estimate point spread functions simultaneously. Finally, a fast deconvolution algorithm is used to restore the nonuniform blur image. We expect that the proposed method can achieve satisfactory deblurring of a single nonuniform blur image.

  4. PARTIAL ERUPTION OF A FILAMENT WITH TWISTING NON-UNIFORM FIELDS

    International Nuclear Information System (INIS)

    Bi, Yi; Jiang, Yunchun; Yang, Jiayan; Xiang, Yongyuan; Cai, Yunfang; Liu, Weiwei

    2015-01-01

    The eruption of a filament in a kinklike fashion is often regarded as a signature of kink instability. However, the kink instability threshold for the filament’s magnetic structure is not widely understood. Using Hα observations from the New Vacuum Solar Telescope, we present a partial eruptive filament. During the eruption, the filament thread appeared to split from its middle and to break out in a kinklike fashion. In this period, the remaining filament material stayed below and erupted without the kinking motion later on. The coronal magnetic field lines associated with the filament are obtained from nonlinear force-free field extrapolations using the twelve-minute-cadence vector magnetograms of the Helioseismic and Magnetic Imager (HMI) on board the Solar Dynamic Observatory. We studied the extrapolated field lines passing through the magnetic dips which are in good agreement with the observed filament. The field lines are non-uniformly twisted and appear to be composed of two twisted flux ropes winding around each other. One of them has a higher twist than the other, and the flux rope with the higher twist has its dips aligned with the kinking eruptive thread at the beginning of its eruption. Before the eruption, moreover, the flux rope with the higher twist was found to expand with an approximately constant field twist. In addition, the helicity flux maps deduced from the HMI magnetograms show that some helicity is injected into the overlying magnetic arcade, but no significant helicity is injected into the flux ropes. Accordingly, we suggest that the highly twisted flux rope became kink unstable when the instability threshold declined with the expansion of the flux rope

  5. Non-uniform cosine modulated filter banks using meta-heuristic algorithms in CSD space

    Directory of Open Access Journals (Sweden)

    Shaeen Kalathil

    2015-11-01

    Full Text Available This paper presents an efficient design of non-uniform cosine modulated filter banks (CMFB using canonic signed digit (CSD coefficients. CMFB has got an easy and efficient design approach. Non-uniform decomposition can be easily obtained by merging the appropriate filters of a uniform filter bank. Only the prototype filter needs to be designed and optimized. In this paper, the prototype filter is designed using window method, weighted Chebyshev approximation and weighted constrained least square approximation. The coefficients are quantized into CSD, using a look-up-table. The finite precision CSD rounding, deteriorates the filter bank performances. The performances of the filter bank are improved using suitably modified meta-heuristic algorithms. The different meta-heuristic algorithms which are modified and used in this paper are Artificial Bee Colony algorithm, Gravitational Search algorithm, Harmony Search algorithm and Genetic algorithm and they result in filter banks with less implementation complexity, power consumption and area requirements when compared with those of the conventional continuous coefficient non-uniform CMFB.

  6. Nanosecond laser texturing of uniformly and non-uniformly wettable micro structured metal surfaces for enhanced boiling heat transfer

    Energy Technology Data Exchange (ETDEWEB)

    Zupančič, Matevž, E-mail: matevz.zupancic@fs.uni-lj.si; Može, Matic; Gregorčič, Peter; Golobič, Iztok

    2017-03-31

    Highlights: • Surfaces with periodically changed wettability were produced by a ns marking laser. • Heat transfer was investigated on uniformly and non-uniformly wettable surfaces. • Microporous surfaces with non-uniform wettability enhance boiling heat transfer. • The most bubble nucleations were observed in the vicinity of the microcavities. • Results agree with the predictions of the nucleation criteria. - Abstract: Microstructured uniformly and non-uniformly wettable surfaces were created on 25-μm-thin stainless steel foils by laser texturing using a marking nanosecond Nd:YAG laser (λ = 1064 nm) and utilizing various laser fluences and scan line separations. High-speed photography and high-speed IR thermography were used to investigate nucleate boiling heat transfer on the microstructured surfaces. The most pronounced results were obtained on a surface with non-uniform microstructure and non-uniform wettability. The obtained results show up to a 110% higher heat transfer coefficients and 20–40 times higher nucleation site densities compared to the untextured surface. We show that the number of active nucleation sites is significantly increased in the vicinity of microcavities that appeared in areas with the smallest (10 μm) scan line separation. Furthermore, this confirms the predictions of nucleation criteria and proves that straightforward, cost-effective nanosecond laser texturing allows the production of cavities with diameters of up to a few micrometers and surfaces with non-uniform wettability. Additionally, this opens up important possibilities for a more deterministic control over the complex boiling process.

  7. Modeling of parallel-plate regenerators with non-uniform plate distributions

    DEFF Research Database (Denmark)

    Jensen, Jesper Buch; Engelbrecht, Kurt; Bahl, Christian Robert Haffenden

    2010-01-01

    plate spacing distributions are presented in order to understand the impact of spacing non-uniformity. Simulations of more realistic distributions where the plate spacings follow normal distributions are then discussed in order to describe the deviation of the performance of a regenerator relative...

  8. A novel scene-based non-uniformity correction method for SWIR push-broom hyperspectral sensors

    Science.gov (United States)

    Hu, Bin-Lin; Hao, Shi-Jing; Sun, De-Xin; Liu, Yin-Nian

    2017-09-01

    A novel scene-based non-uniformity correction (NUC) method for short-wavelength infrared (SWIR) push-broom hyperspectral sensors is proposed and evaluated. This method relies on the assumption that for each band there will be ground objects with similar reflectance to form uniform regions when a sufficient number of scanning lines are acquired. The uniform regions are extracted automatically through a sorting algorithm, and are used to compute the corresponding NUC coefficients. SWIR hyperspectral data from airborne experiment are used to verify and evaluate the proposed method, and results show that stripes in the scenes have been well corrected without any significant information loss, and the non-uniformity is less than 0.5%. In addition, the proposed method is compared to two other regular methods, and they are evaluated based on their adaptability to the various scenes, non-uniformity, roughness and spectral fidelity. It turns out that the proposed method shows strong adaptability, high accuracy and efficiency.

  9. An Enumerative Combinatorics Model for Fragmentation Patterns in RNA Sequencing Provides Insights into Nonuniformity of the Expected Fragment Starting-Point and Coverage Profile.

    Science.gov (United States)

    Prakash, Celine; Haeseler, Arndt Von

    2017-03-01

    RNA sequencing (RNA-seq) has emerged as the method of choice for measuring the expression of RNAs in a given cell population. In most RNA-seq technologies, sequencing the full length of RNA molecules requires fragmentation into smaller pieces. Unfortunately, the issue of nonuniform sequencing coverage across a genomic feature has been a concern in RNA-seq and is attributed to biases for certain fragments in RNA-seq library preparation and sequencing. To investigate the expected coverage obtained from fragmentation, we develop a simple fragmentation model that is independent of bias from the experimental method and is not specific to the transcript sequence. Essentially, we enumerate all configurations for maximal placement of a given fragment length, F, on transcript length, T, to represent every possible fragmentation pattern, from which we compute the expected coverage profile across a transcript. We extend this model to incorporate general empirical attributes such as read length, fragment length distribution, and number of molecules of the transcript. We further introduce the fragment starting-point, fragment coverage, and read coverage profiles. We find that the expected profiles are not uniform and that factors such as fragment length to transcript length ratio, read length to fragment length ratio, fragment length distribution, and number of molecules influence the variability of coverage across a transcript. Finally, we explore a potential application of the model where, with simulations, we show that it is possible to correctly estimate the transcript copy number for any transcript in the RNA-seq experiment.

  10. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    G. Gomez

    Since December, the muon alignment community has focused on analyzing the data recorded so far in order to produce new DT and CSC Alignment Records for the second reprocessing of CRAFT data. Two independent algorithms were developed which align the DT chambers using global tracks, thus providing, for the first time, a relative alignment of the barrel with respect to the tracker. These results are an important ingredient for the second CRAFT reprocessing and allow, for example, a more detailed study of any possible mis-modelling of the magnetic field in the muon spectrometer. Both algorithms are constructed in such a way that the resulting alignment constants are not affected, to first order, by any such mis-modelling. The CSC chambers have not yet been included in this global track-based alignment due to a lack of statistics, since only a few cosmics go through the tracker and the CSCs. A strategy exists to align the CSCs using the barrel as a reference until collision tracks become available. Aligning the ...

  11. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    G.Gomez

    2011-01-01

    The Muon Alignment work now focuses on producing a new track-based alignment with higher track statistics, making systematic studies between the results of the hardware and track-based alignment methods and aligning the barrel using standalone muon tracks. Currently, the muon track reconstruction software uses a hardware-based alignment in the barrel (DT) and a track-based alignment in the endcaps (CSC). An important task is to assess the muon momentum resolution that can be achieved using the current muon alignment, especially for highly energetic muons. For this purpose, cosmic ray muons are used, since the rate of high-energy muons from collisions is very low and the event statistics are still limited. Cosmics have the advantage of higher statistics in the pT region above 100 GeV/c, but they have the disadvantage of having a mostly vertical topology, resulting in a very few global endcap muons. Only the barrel alignment has therefore been tested so far. Cosmic muons traversing CMS from top to bottom are s...

  12. Non-Uniform Cathode Emission Studies of a MIG Gun

    Science.gov (United States)

    Marchewka, C. D.; Shapiro, M. A.; Sirigiri, J. R.; Temkin, R. J.

    2004-11-01

    We present the initial results of the modeling of the effect of emission non-uniformity in 96 kV, 40 A Magnetron Injection Gun (MIG) of a 1.5 MW 110 GHz gyrotron using a 3D gun simulation code. The azimuthal emission nonuniformity can lead to increased mode competition and an overall decreased efficiency of the device [1]. The electron beam is modeled from the cathode to a downstream position where the velocity spread saturates using the AMAZE 3D suite of codes. After bench marking the results of the 3D code with 2D codes such as TRAK2D and EGUN, the emitter was modified to simulate asymmetric emission from the cathode to gain an understanding into the effects of inhomogeneous beam current density on the velocity spread and pitch factor of the electron beam. [1] G. S. Nusinovich, A.N. Vlasov, M. Botton, T. M. Antonsen, Jr., S. Cauffman, K. Felch, ``Effect of the azimuthal inhomogeneity of electron emission on gyrotron operation,'' Phys. Plasmas, vol. 8, no. 7, pp. 3473-3479, 2001

  13. Electrostatic ion-cyclotron waves in a nonuniform magnetic field

    International Nuclear Information System (INIS)

    Cartier, S.L.; D'Angelo, N.; Merlino, R.L.

    1985-01-01

    The properties of electrostatic ion-cyclotron waves excited in a single-ended cesium Q machine with a nonuniform magnetic field are described. The electrostatic ion-cyclotron waves are generated in the usual manner by drawing an electron current to a small exciter disk immersed in the plasma column. The parallel and perpendicular (to B) wavelengths and phase velocities are determined by mapping out two-dimensional wave phase contours. The wave frequency f depends on the location of the exciter disk in the nonuniform magnetic field, and propagating waves are only observed in the region where f> or approx. =f/sub c/i, where f/sub c/i is the local ion-cyclotron frequency. The parallel phase velocity is in the direction of the electron drift. From measurements of the plasma properties along the axis, it is inferred that the electron drift velocity is not uniform along the entire current channel. The evidence suggests that the waves begin being excited at that axial position where the critical drift velocity is first exceeded, consistent with a current-driven excitation mechanism

  14. Deep convolutional neural networks for dense non-uniform motion deblurring

    CSIR Research Space (South Africa)

    Cronje, J

    2015-11-01

    Full Text Available to form a dense non-uniform motion estimation map. Furthermore, a second CNN is trained to perform deblurring given a blurry image patch and the estimated motion vector. Combining the two trained networks result in a deep learning approach that can enhance...

  15. Heteroepitaxial Patterned Growth of Vertically Aligned and Periodically Distributed ZnO Nanowires on GaN Using Laser Interference Ablation

    KAUST Repository

    Yuan, Dajun

    2010-08-23

    A simple two-step method of fabricating vertically aligned and periodically distributed ZnO nanowires on gallium nitride (GaN) substrates is described. The method combines laser interference ablation (LIA) and low temperature hydrothermal decomposition. The ZnO nanowires grow heteroepitaxially on unablated regions of GaN over areas spanning 1 cm2, with a high degree of control over size, orientation, uniformity, and periodicity. High resolution transmission electron microscopy and scanning electron microscopy are utilized to study the structural characteristics of the LIA-patterned GaN substrate in detail. These studies reveal the possible mechanism for the preferential, site-selective growth of the ZnO nanowires. The method demonstrates high application potential for wafer-scale integration into sensor arrays, piezoelectric devices, and optoelectronic devices. © 2010 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  16. Performance enhancement of photovoltaic array through string and central based MPPT system under non-uniform irradiance conditions

    International Nuclear Information System (INIS)

    Syafaruddin; Karatepe, Engin; Hiyama, Takashi

    2012-01-01

    Highlights: ► We propose MPPT method for tracking global MPP of PV arrays under non-uniform irradiance conditions. ► We compare the performance of string and central based MPPT. ► Intelligent control method is utilized to identify the global operating voltage in string and central based MPPT system. ► The performance of proposed method is tested on different size of PV. - Abstract: Mismatching losses reduction of photovoltaic (PV) array has been intensively discussed through the increasing penetration of residential and commercial PV systems. Many causes of mismatching losses have been identified and plenty of proposed methods to solve this problem have been recently proposed. This paper deals with reducing method of mismatching losses due to the non-uniform irradiance conditions. It is well-known that a certain number of multiple peaks occur on the power–voltage curve as the number of PV modules in one-string increases under non-uniform operating conditions. Since the conventional control method only drives the operating points of PV system to the local maxima close to open circuit voltage, only small portion of power can be extracted from the PV system. In this study, a radial basis function neural network (RBF-ANN) based intelligent control method is utilized to map the global operating voltage and non-irradiance operating condition in string and central based MPPT systems. The proposed method has been tested on 10 × 3 (2.2 kW), 15 × 3 (2.5 kW) and 20 × 3 (3.3 kW) of series–parallel PV array configuration under random-shaded and continuous-shaded patterns. The proposed method is compared with the ideal case and conventional method through a simple power–voltage curve of PV arrays. The simulation results show that there are significant increases of about 30–60% of the extracted power in one operating condition when the proposed method is able to shift the operating voltage of modules to their optimum voltages.

  17. Factorization method for difference equations of hypergeometric type on nonuniform lattices

    Energy Technology Data Exchange (ETDEWEB)

    Alvarez-Nodarse, R. [Departamento de Analisis Matematico, Universidad de Sevilla, Sevilla (Spain); Instituto Carlos I de Fisica Teorica y Computacional, Universidad de Granada, Granada (Spain); Costas-Santos, R.S. [Departamento de Analisis Matematico, Universidad de Sevilla, Sevilla (Spain)

    2001-07-13

    We study the factorization of the hypergeometric-type difference equation of Nikiforov and Uvarov on nonuniform lattices. An explicit form of the raising and lowering operators is derived and some relevant examples are given. (author)

  18. Macroscopic Ensembles of Aligned Carbon Nanotubes in Bubble Imprints Studied by Polarized Raman Microscopy

    Directory of Open Access Journals (Sweden)

    Shota Ushiba

    2014-01-01

    Full Text Available We study the alignment of single-wall carbon nanotubes (SWCNTs in bubble imprints through polarized Raman microscopy. A hemispherical bubble containing SWCNTs is pressed against a glass substrate, resulting in an imprint of the bubble membrane with a coffee ring on the substrate. We find that macroscopic ensembles of aligned SWCNTs are obtained in the imprints, in which there are three patterns of orientations: (i azimuthal alignment on the coffee ring, (ii radial alignment at the edge of the membrane, and (iii random orientation at the center of the membrane. We also find that the alignment of SWCNTs in the imprints can be manipulated by spinning bubbles. The orientation of SWCNTs on the coffee ring is directed radially, which is orthogonal to the case of unspun bubbles. This approach enables one to align SWCNTs in large quantities and in a short time, potentially opening up a wide range of CNT-based electronic and optical applications.

  19. Microdosimetric implications of the nonuniformity of deposition patterns of inhaled radioactive nuclides

    International Nuclear Information System (INIS)

    Balashazy, I.; Palfalvi, J.; Hofmann, W.

    2000-01-01

    Aerosol deposition studies have demonstrated that deposition patterns of inhaled aerosols within airway bifurcations are distinctly inhomogeneous during inhalation as well as exhalation. Current lung deposition models, however, employ analytical equations for the calculation of deposition efficiencies, which, by definition, cannot describe local inhomogeneities of deposition within airway bifurcations. In the present study, local deposition patterns in airway bifurcations were computed by our recently developed numerical particle deposition model. To quantify the inhomogeneities of predicted deposition patterns, the whole surface of the bifurcation was scanned by a pre-specified surface element. Local deposition enhancement factors were then determined as the ratio of local to average deposition densities. In the present study, distributions of enhancement factors and their corresponding maximum values were computed for a physiologically realistic bifurcation geometry in upper human bronchial airways (airway generations 3-4 in Weibel's Model-A) assuming various surface element (patch) sizes (0.1 mm x 0.1 mm-3 mm x 3 mm). Simulations were performed for a wide range of particle sizes (1 mm-10 μm) and flow conditions (flow rates of 10 and 60 l/min, and parabolic and uniform inlet flow profiles). Computed air velocity fields and particle trajectories demonstrated the significant role of secondary flows for particle deposition. In the case of inspiration, areas of enhanced deposition were formed primarily at the carinal ridge or at the inner sides of the daughter branches. In the case of expiration, ''hot spots'' could be observed are at the top and bottom of the parent airway. The sizes of these deposition hot spots depend on particle size, flow rate and bifurcation geometry. For example, enhanced deposition areas for large particles were much more intense than those found for ultrafine particles. The computed local deposition enhancement factors exhibited strong

  20. Laser beam alignment and profilometry using diagnostic fluorescent safety mirrors

    Science.gov (United States)

    Lizotte, Todd E.

    2011-03-01

    There are a wide range of laser beam delivery systems in use for various purposes; including industrial and medical applications. Virtually all such beam delivery systems for practical purposes employ optical systems comprised of mirrors and lenses to shape, focus and guide the laser beam down to the material being processed. The goal of the laser beam delivery is to set the optimum parameters and to "fold" the beam path to reduce the mechanical length of the optical system, thereby allowing a physically compact system. In many cases, even a compact system can incorporate upwards of six mirrors and a comparable number of lenses all needing alignment so they are collinear. One of the major requirements for use of such systems in industry is a method of safe alignment. The alignment process requires that the aligner determine where the beam strikes each element. The aligner should also preferably be able to determine the shape or pattern of the laser beam at that point and its relative power. These alignments are further compounded in that the laser beams generated are not visible to the unaided human eye. Such beams are also often of relatively high power levels, and are thereby a significant hazard to the eyes of the aligner. Obvious an invisible beam makes it nearly impossible to align laser system without some form of optical assistance. The predominant method of visually aligning the laser beam delivery is the use of thermal paper, paper cards or fluorescing card material. The use of paper products which have limited power handling capability or coated plastics can produce significant debris and contaminants within the beam line that ultimately damage the optics. The use of the cards can also create significant laser light scatter jeopardizing the safety of the person aligning the system. This paper covers a new safety mirror design for use with at various UV and Near IR wavelengths (193 nm to 1064 nm) within laser beam delivery systems and how its use can

  1. Alignment-Annotator web server: rendering and annotating sequence alignments.

    Science.gov (United States)

    Gille, Christoph; Fähling, Michael; Weyand, Birgit; Wieland, Thomas; Gille, Andreas

    2014-07-01

    Alignment-Annotator is a novel web service designed to generate interactive views of annotated nucleotide and amino acid sequence alignments (i) de novo and (ii) embedded in other software. All computations are performed at server side. Interactivity is implemented in HTML5, a language native to web browsers. The alignment is initially displayed using default settings and can be modified with the graphical user interfaces. For example, individual sequences can be reordered or deleted using drag and drop, amino acid color code schemes can be applied and annotations can be added. Annotations can be made manually or imported (BioDAS servers, the UniProt, the Catalytic Site Atlas and the PDB). Some edits take immediate effect while others require server interaction and may take a few seconds to execute. The final alignment document can be downloaded as a zip-archive containing the HTML files. Because of the use of HTML the resulting interactive alignment can be viewed on any platform including Windows, Mac OS X, Linux, Android and iOS in any standard web browser. Importantly, no plugins nor Java are required and therefore Alignment-Anotator represents the first interactive browser-based alignment visualization. http://www.bioinformatics.org/strap/aa/ and http://strap.charite.de/aa/. © The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research.

  2. Non-uniformity of phase structure in immiscible polymer blends

    Czech Academy of Sciences Publication Activity Database

    Fortelný, Ivan; Lapčíková, Monika; Lednický, František; Starý, Zdeněk; Kruliš, Zdeněk

    2008-01-01

    Roč. 48, č. 3 (2008), s. 564-571 ISSN 0032-3888 R&D Projects: GA ČR GA106/06/0729; GA ČR GA106/06/0761 Institutional research plan: CEZ:AV0Z40500505 Keywords : polymer blends * melt mixing * non-uniform morphology Subject RIV: CD - Macromolecular Chemistry Impact factor: 1.245, year: 2008

  3. Selective growth of vertically aligned Fe-filled carbon nanotubes on oxidized silicon substrates

    Energy Technology Data Exchange (ETDEWEB)

    Moench, I; Kozhuharova-Koseva, R; Ruemmeli, M; Elefant, D; Gemming, T; Kaltofen, R; Leonhardt, A; Schaefer, T; Buechner, B [Leibniz Institute of Solid State and Materials Research Dresden (IFW Dresden), Helmholtzstr. 20, D-01069 Dresden (Germany)

    2007-04-15

    Vertically aligned Fe-filled multi-wall carbon nanotubes (MWNTs) have been grown selectively on the SiO{sub 2} surfaces of patterned amorphous carbon (a-C)/SiO{sub 2}/Si substrates. Their morphology, structure and magnetic properties have been studied. The a-C patterns were prepared using conventional lithography processes combined with a sputter-deposition of a-C (thickness of 100 nm). The aligned Fe-filled MWNTs were produced by pyrolysis of ferrocene in a CVD reactor with a two zone furnace system and have high filling yield. The encapsulated Fe nanowires grown on the SiO{sub 2} structures of the patterned a-C/SiO{sub 2}/Si substrates have diameters of 10-20 nm and can reach a few micrometers in length. The described method enables the preparation of complex architectures of Fe-filled MWNTs and may be used for future applications based on filled nanotubes.

  4. 3D-2D Deformable Image Registration Using Feature-Based Nonuniform Meshes.

    Science.gov (United States)

    Zhong, Zichun; Guo, Xiaohu; Cai, Yiqi; Yang, Yin; Wang, Jing; Jia, Xun; Mao, Weihua

    2016-01-01

    By using prior information of planning CT images and feature-based nonuniform meshes, this paper demonstrates that volumetric images can be efficiently registered with a very small portion of 2D projection images of a Cone-Beam Computed Tomography (CBCT) scan. After a density field is computed based on the extracted feature edges from planning CT images, nonuniform tetrahedral meshes will be automatically generated to better characterize the image features according to the density field; that is, finer meshes are generated for features. The displacement vector fields (DVFs) are specified at the mesh vertices to drive the deformation of original CT images. Digitally reconstructed radiographs (DRRs) of the deformed anatomy are generated and compared with corresponding 2D projections. DVFs are optimized to minimize the objective function including differences between DRRs and projections and the regularity. To further accelerate the above 3D-2D registration, a procedure to obtain good initial deformations by deforming the volume surface to match 2D body boundary on projections has been developed. This complete method is evaluated quantitatively by using several digital phantoms and data from head and neck cancer patients. The feature-based nonuniform meshing method leads to better results than either uniform orthogonal grid or uniform tetrahedral meshes.

  5. 3D-2D Deformable Image Registration Using Feature-Based Nonuniform Meshes

    Directory of Open Access Journals (Sweden)

    Zichun Zhong

    2016-01-01

    Full Text Available By using prior information of planning CT images and feature-based nonuniform meshes, this paper demonstrates that volumetric images can be efficiently registered with a very small portion of 2D projection images of a Cone-Beam Computed Tomography (CBCT scan. After a density field is computed based on the extracted feature edges from planning CT images, nonuniform tetrahedral meshes will be automatically generated to better characterize the image features according to the density field; that is, finer meshes are generated for features. The displacement vector fields (DVFs are specified at the mesh vertices to drive the deformation of original CT images. Digitally reconstructed radiographs (DRRs of the deformed anatomy are generated and compared with corresponding 2D projections. DVFs are optimized to minimize the objective function including differences between DRRs and projections and the regularity. To further accelerate the above 3D-2D registration, a procedure to obtain good initial deformations by deforming the volume surface to match 2D body boundary on projections has been developed. This complete method is evaluated quantitatively by using several digital phantoms and data from head and neck cancer patients. The feature-based nonuniform meshing method leads to better results than either uniform orthogonal grid or uniform tetrahedral meshes.

  6. Measurement of Anisotropic Particle Interactions with Nonuniform ac Electric Fields.

    Science.gov (United States)

    Rupp, Bradley; Torres-Díaz, Isaac; Hua, Xiaoqing; Bevan, Michael A

    2018-02-20

    Optical microscopy measurements are reported for single anisotropic polymer particles interacting with nonuniform ac electric fields. The present study is limited to conditions where gravity confines particles with their long axis parallel to the substrate such that particles can be treated using quasi-2D analysis. Field parameters are investigated that result in particles residing at either electric field maxima or minima and with long axes oriented either parallel or perpendicular to the electric field direction. By nonintrusively observing thermally sampled positions and orientations at different field frequencies and amplitudes, a Boltzmann inversion of the time-averaged probability of states yields kT-scale energy landscapes (including dipole-field, particle-substrate, and gravitational potentials). The measured energy landscapes show agreement with theoretical potentials using particle conductivity as the sole adjustable material property. Understanding anisotropic particle-field energy landscapes vs field parameters enables quantitative control of local forces and torques on single anisotropic particles to manipulate their position and orientation within nonuniform fields.

  7. Effect of rise-time patterns on dynamics of sheath expansion during plasma immersion ion implantation

    International Nuclear Information System (INIS)

    Huang Yongxian; Tian Xiubo; Yang Shiqin; Fu Ricky; Paul, C.K.

    2007-01-01

    Plasma immersion ion implantation (PIII) has been developed as a low-cost and efficient surface modification technique of irregularly-shaped objects. The effect of six pulse waves with different rise-time patterns on the spatio-temporal evolution of plasma sheath,energy and dose of ion implantation has been simulated by particle-in-cell modeling. Statistical results may be obtained through assuming the Boltzmann distribution of electrons, and solving Poisson and Newton equations for tracing each ion in the plasma sheath. The results show that rise-time pattern has a critical influence on the evolution of plasma sheath. There exists maximum thickness difference of plasma sheath for different waveforms. The acceleration of ions is non-uniform due to the non-uniformity of electrical field strength. The maximum gradient of electrical field appears near the edge of plasma sheath. The results also show that optimization of dose and energy of incident ions may be achieved through modification of rise-time pattern. The numerical simulation of sheath expansion can be effectively used to provide a scientific basis for optimizing the PIII process. (authors)

  8. Characterization of nonuniform chaos in area-preserving nonlinear maps through a continuous archetype

    International Nuclear Information System (INIS)

    Cerbelli, S.; Giona, M.

    2008-01-01

    Numerical investigations conducted over a wealth of nonlinear area-preserving smooth maps (e.g. the Standard Map) showed that these systems possess physically relevant features that are not captured by any continuous archetype of two-dimensional conservative dynamics. Among these properties are the dispersive behavior of stretch factor statistics, the multifractal character of the measure associated with invariant foliations, the sign-alternating property, accounting for the nestedly bent structure of invariant foliations, and the strict inequality between the topological entropy, h top , and the Lyapunov exponent, Λ. We refer to systems possessing all of these properties as nonuniformly chaotic. In this article, we present a globally continuous, piecewise-smooth area-preserving transformation, the toral homeomorphism H, as an archetype of nonuniformly chaotic behavior. The relatively simple structure of point set dynamics and the closed-form knowledge of the pointwise expanding and contracting invariant directions associated with H, permits to derive either analytically, or with arbitrary numerical precision, the standard chaotic properties as well as the dynamics of the physically relevant properties that define nonuniform chaos. Potentialities and limitations of the model proposed in representing geometric and statistical properties of physically relevant smooth systems are discussed in detail

  9. On The Dynamic Analysis of Non-Uniform Beams Under Uniformly ...

    African Journals Online (AJOL)

    ... the non-uniform continuous beam was replaced by a non-continuous (discrete) system made up of beam elements. The modified elemental and overall stiffness, and mass matrices, the elemental and overall centripetal acceleration matrices as well as the load vector were derived. Next, the Newmark's direct integration ...

  10. RevTrans: multiple alignment of coding DNA from aligned amino acid sequences

    DEFF Research Database (Denmark)

    Wernersson, Rasmus; Pedersen, Anders Gorm

    2003-01-01

    The simple fact that proteins are built from 20 amino acids while DNA only contains four different bases, means that the 'signal-to-noise ratio' in protein sequence alignments is much better than in alignments of DNA. Besides this information-theoretical advantage, protein alignments also benefit...... proteins. It is therefore preferable to align coding DNA at the amino acid level and it is for this purpose we have constructed the program RevTrans. RevTrans constructs a multiple DNA alignment by: (i) translating the DNA; (ii) aligning the resulting peptide sequences; and (iii) building a multiple DNA...

  11. Effects of a nonuniform open magnetic field on the plasma presheath

    International Nuclear Information System (INIS)

    Sato, Kunihiro; Miyawaki, Fujio

    1991-01-01

    Effects of a nonuniform magnetic field on the plasma presheath is numerically investigated using the plasma equation for a collisionless plasma with a finite-temperature particle source. The present calculation confirms that analytical solutions previously published by the authors are available over a wide range of mirror ratio. Potential drop in the presheath, which considerably depends on both the magnetic strength profile and the spatial distribution of the particle source, is remarkably increased by applying an expanding magnetic field when plasma particles are generated in the inner part of the plasma. An effect of a nonuniform magnetic field on sheath formation is also discussed by using the calculated ion distribution function. If the plasma equation has no singularity at the sheath edge, its solution satisfies the generalized Bohm criterion with the inequality sign in the expanding magnetic field. (author)

  12. Enhanced method of magnetic powder alignment for production of PLP Nd-Fe-B magnets

    International Nuclear Information System (INIS)

    Popov, A.G.; Golovnia, O.A.; Protasov, A.V.

    2017-01-01

    It is demonstrated how the high degree of powder alignment in PLP magnets can be achieved by loading the powder into a container placed in a magnetic field of moderate strength. The strip-cast alloy with a composition of 30.00 Nd, 1.95 Dy, 66.42 Fe, 0.99 B, 0.54 Co, 0.1 Ga (wt%) was subjected to hydrogen decrepitation and then milled in a vibratory mill in toluene to an average particle size of 2.9 µm determined by the FSSS method. The powder was compacted in the magnetic field of 0.2 – 1.2 T to the filling density 2.6 – 3.2×10 3 kg/m 3 . It is shown that loading the powder into a container placed in a magnetic field enhances the degree of powder alignment in sintered Nd-Fe-B magnets produced from non-pressed powder. At the filling density less than 3.2×10 3 kg/m 3 , the density of magnets is high but insufficient, because of the formation of magnetostatic chains of particles, which impedes the powder compaction. The simulation by the discrete-element method qualitatively proves that the magnetostatic interaction of the chains of particles that are formed in the course of loading in the magnetic field stimulates a decrease in the density of the sintered magnets and its non-uniform distribution over the sample. As a result of the optimization of the parameters of the alignment and compaction of the powder loaded in a magnetic field, PLP magnets with B r ≥1.34 T, H c ≥950 kA/m, (BH) max ≥340 kJ/m 3 , and the degree of alignment exceeding 96% were produced. - Highlights: • The pressless process (PLP) in magnet production is studied. • A new method of the loading of powder in an applied DC magnetic field is suggested. • The method allows achieving higher degree of alignment in moderate magnetic field. • Density of sintered magnets is studied experimentally and via DEM simulation. • Low density is caused by the formation of magnetostatic chains of powder particles.

  13. Enhanced method of magnetic powder alignment for production of PLP Nd-Fe-B magnets

    Energy Technology Data Exchange (ETDEWEB)

    Popov, A.G. [M.N. Miheev Institute of Metal Physics of Ural Branch of Russian Academy of Sciences, Str. S. Kovalevskoy, 18, 620137 Ekaterinburg (Russian Federation); Institute of Natural Sciences and Mathematics, Ural Federal University, Av. Mira, 19, 620002 Ekaterinburg (Russian Federation); Golovnia, O.A., E-mail: golovnya@imp.uran.ru [M.N. Miheev Institute of Metal Physics of Ural Branch of Russian Academy of Sciences, Str. S. Kovalevskoy, 18, 620137 Ekaterinburg (Russian Federation); Institute of Natural Sciences and Mathematics, Ural Federal University, Av. Mira, 19, 620002 Ekaterinburg (Russian Federation); Protasov, A.V. [M.N. Miheev Institute of Metal Physics of Ural Branch of Russian Academy of Sciences, Str. S. Kovalevskoy, 18, 620137 Ekaterinburg (Russian Federation); Institute of Natural Sciences and Mathematics, Ural Federal University, Av. Mira, 19, 620002 Ekaterinburg (Russian Federation)

    2017-04-15

    It is demonstrated how the high degree of powder alignment in PLP magnets can be achieved by loading the powder into a container placed in a magnetic field of moderate strength. The strip-cast alloy with a composition of 30.00 Nd, 1.95 Dy, 66.42 Fe, 0.99 B, 0.54 Co, 0.1 Ga (wt%) was subjected to hydrogen decrepitation and then milled in a vibratory mill in toluene to an average particle size of 2.9 µm determined by the FSSS method. The powder was compacted in the magnetic field of 0.2 – 1.2 T to the filling density 2.6 – 3.2×10{sup 3} kg/m{sup 3}. It is shown that loading the powder into a container placed in a magnetic field enhances the degree of powder alignment in sintered Nd-Fe-B magnets produced from non-pressed powder. At the filling density less than 3.2×10{sup 3} kg/m{sup 3}, the density of magnets is high but insufficient, because of the formation of magnetostatic chains of particles, which impedes the powder compaction. The simulation by the discrete-element method qualitatively proves that the magnetostatic interaction of the chains of particles that are formed in the course of loading in the magnetic field stimulates a decrease in the density of the sintered magnets and its non-uniform distribution over the sample. As a result of the optimization of the parameters of the alignment and compaction of the powder loaded in a magnetic field, PLP magnets with B{sub r} ≥1.34 T, H{sub c} ≥950 kA/m, (BH){sub max} ≥340 kJ/m{sup 3}, and the degree of alignment exceeding 96% were produced. - Highlights: • The pressless process (PLP) in magnet production is studied. • A new method of the loading of powder in an applied DC magnetic field is suggested. • The method allows achieving higher degree of alignment in moderate magnetic field. • Density of sintered magnets is studied experimentally and via DEM simulation. • Low density is caused by the formation of magnetostatic chains of powder particles.

  14. A new purely growing instability in a strongly magnetized nonuniform pair plasma

    International Nuclear Information System (INIS)

    Shukla, Nitin; Shukla, P.K.

    2007-01-01

    It is shown that a strongly magnetized nonuniform electron-positron (hereafter referred to as e-p or pair) plasma is unstable against low-frequency (in comparison with the electron gyrofrequency) electrostatic oscillations. For this purpose, a dispersion relation is derived by using the Poisson equation as well as the electron and positron continuity equations with the guiding center drifts for the electron and positron fluids. The dispersion relation admits a purely growing instability in the presence of the equilibrium density and magnetic field inhomogeneities. Physically, instability arises because of the inhomogeneous magnetic field induced differential electron and positron density fluctuations, which do not keep in phase with the electrostatic potential arising from the charge separation in our nonuniform pair plasmas

  15. THE BEHAVIOR OF TRANSVERSE WAVES IN NONUNIFORM SOLAR FLUX TUBES. I. COMPARISON OF IDEAL AND RESISTIVE RESULTS

    International Nuclear Information System (INIS)

    Soler, Roberto; Terradas, Jaume; Oliver, Ramón; Goossens, Marcel

    2013-01-01

    Magnetohydrodynamic (MHD) waves are ubiquitously observed in the solar atmosphere. Kink waves are a type of transverse MHD waves in magnetic flux tubes that are damped due to resonant absorption. The theoretical study of kink MHD waves in solar flux tubes is usually based on the simplification that the transverse variation of density is confined to a nonuniform layer much thinner than the radius of the tube, i.e., the so-called thin boundary approximation. Here, we develop a general analytic method to compute the dispersion relation and the eigenfunctions of ideal MHD waves in pressureless flux tubes with transversely nonuniform layers of arbitrary thickness. Results for kink waves are produced and compared with fully numerical resistive MHD eigenvalue computations in the limit of small resistivity. We find that the frequency and resonant damping rate are the same in both ideal and resistive cases. The actual results for thick nonuniform layers deviate from the behavior predicted in the thin boundary approximation and strongly depend on the shape of the nonuniform layer. The eigenfunctions in ideal MHD are very different from those in resistive MHD. The ideal eigenfunctions display a global character regardless of the thickness of the nonuniform layer, while the resistive eigenfunctions are localized around the resonance and are indistinguishable from those of ordinary resistive Alfvén modes. Consequently, the spatial distribution of wave energy in the ideal and resistive cases is dramatically different. This poses a fundamental theoretical problem with clear observational consequences

  16. Wafer-Scale High-Throughput Ordered Growth of Vertically Aligned ZnO Nanowire Arrays

    KAUST Repository

    Wei, Yaguang

    2010-09-08

    This article presents an effective approach for patterned growth of vertically aligned ZnO nanowire (NW) arrays with high throughput and low cost at wafer scale without using cleanroom technology. Periodic hole patterns are generated using laser interference lithography on substrates coated with the photoresist SU-8. ZnO NWs are selectively grown through the holes via a low-temperature hydrothermal method without using a catalyst and with a superior control over orientation, location/density, and as-synthesized morphology. The development of textured ZnO seed layers for replacing single crystalline GaN and ZnO substrates extends the large-scale fabrication of vertically aligned ZnO NW arrays on substrates of other materials, such as polymers, Si, and glass. This combined approach demonstrates a novel method of manufacturing large-scale patterned one-dimensional nanostructures on various substrates for applications in energy harvesting, sensing, optoelectronics, and electronic devices. © 2010 American Chemical Society.

  17. Sharp lower bounds on the extractable randomness from non-uniform sources

    NARCIS (Netherlands)

    Skoric, B.; Obi, C.; Verbitskiy, E.A.; Schoenmakers, B.

    2011-01-01

    Extraction of uniform randomness from (noisy) non-uniform sources is an important primitive in many security applications, e.g. (pseudo-)random number generators, privacy-preserving biometrics, and key storage based on Physical Unclonable Functions. Generic extraction methods exist, using universal

  18. Deformation of Two-Dimensional Nonuniform-Membrane Red Blood Cells Simulated by a Lattice Boltzmann Model

    International Nuclear Information System (INIS)

    Hua-Bing, Li; Li, Jin; Bing, Qiu

    2008-01-01

    To study two-dimensional red blood cells deforming in a shear Bow with the membrane nonuniform on the rigidity and mass, the membrane is discretized into equilength segments. The fluid inside and outside the red blood cell is simulated by the D2Q9 lattice Boltzmann model and the hydrodynamic forces exerted on the membrane from the inner and outer of the red blood cell are calculated by a stress-integration method. Through the global deviation from the curvature of uniform-membrane, we find that when the membrane is nonuniform on the rigidity, the deviation first decreases with the time increases and implies that the terminal profile of the red blood cell is static. To a red blood cell with the mass nonuniform on the membrane, the deviation becomes more large, and the mass distribution affects the profile of the two sides of the flattened red blood cell in a shear flow. (fundamental areas of phenomenology(including applications))

  19. Nano rough micron patterned titanium for directing osteoblast morphology and adhesion

    Directory of Open Access Journals (Sweden)

    Sabrina Puckett

    2008-06-01

    Full Text Available Sabrina Puckett, Rajesh Pareta, Thomas J WebsterDivision of Engineering, Brown University, Providence, RI, USAAbstract: Previous studies have demonstrated greater functions of osteoblasts (bone-forming cells on nanophase compared with conventional metals. Nanophase metals possess a biologically inspired nanostructured surface that mimics the dimensions of constituent components in bone, including collagen and hydroxyapatite. Not only do these components possess dimensions on the nanoscale, they are aligned in a parallel manner creating a defined orientation in bone. To date, research has yet to evaluate the effect that organized nanosurface features can have on the interaction of osteoblasts with material surfaces. Therefore, to determine if surface orientation of features can mediate osteoblast adhesion and morphology, this study investigated osteoblast function on patterned titanium substrates containing alternating regions of micron rough and nano rough surfaces prepared by novel electron beam evaporation techniques. This study was also interested in determining whether or not the size of the patterned regions had an effect on osteoblast behavior and alignment. Results indicated early controlled osteoblast alignment on these patterned materials as well as greater osteoblast adhesion on the nano rough regions of these patterned substrates. Interestingly, decreasing the width of the nano rough regions (from 80 µm to 22 µm on these patterned substrates resulted in a decreased number of osteoblasts adhering to these areas. Changes in the width of the nano rough regions also resulted in changes in osteoblast morphology, thus, suggesting there is an optimal pattern dimension that osteoblasts prefer. In summary, results of this study provided evidence that aligned nanophase metal features on the surface of titanium improved early osteoblast functions (morphology and adhesion promising for their long term functions, criteria necessary to improve

  20. The effects of non-uniform flow velocity on vibrations of single-walled carbon nanotube conveying fluid

    Energy Technology Data Exchange (ETDEWEB)

    Sadeghi-Goughari, Moslem [Shahid Bahonar University of Kerman, Kerman (Iran, Islamic Republic of); Hosseini, Mohammad [Sirjan University of Technology, Sirjan (Iran, Islamic Republic of)

    2015-02-15

    The vibrational behavior of a viscous nanoflow-conveying single-walled carbon nanotube (SWCNT) was investigated. The nonuniformity of the flow velocity distribution caused by the viscosity of fluid and the small-size effects on the flow field was considered. Euler-Bernoulli beam model was used to investigate flow-induced vibration of the nanotube, while the non-uniformity of the flow velocity and the small-size effects of the flow field were formulated through Knudsen number (Kn), as a discriminant parameter. For laminar flow in a circular nanotube, the momentum correction factor was developed as a function of Kn. For Kn = 0 (continuum flow), the momentum correction factor was found to be 1.33, which decreases by the increase in Kn may even reach near 1 for the transition flow regime. We observed that for passage of viscous flow through a nanotube with the non-uniform flow velocity, the critical continuum flow velocity for divergence decreased considerably as opposed to those for the uniform flow velocity, while by increasing Kn, the difference between the uniform and non-uniform flow models may be reduced. In the solution part, the differential transformation method (DTM) was used to solve the governing differential equations of motion.

  1. The effects of non-uniform flow velocity on vibrations of single-walled carbon nanotube conveying fluid

    International Nuclear Information System (INIS)

    Sadeghi-Goughari, Moslem; Hosseini, Mohammad

    2015-01-01

    The vibrational behavior of a viscous nanoflow-conveying single-walled carbon nanotube (SWCNT) was investigated. The nonuniformity of the flow velocity distribution caused by the viscosity of fluid and the small-size effects on the flow field was considered. Euler-Bernoulli beam model was used to investigate flow-induced vibration of the nanotube, while the non-uniformity of the flow velocity and the small-size effects of the flow field were formulated through Knudsen number (Kn), as a discriminant parameter. For laminar flow in a circular nanotube, the momentum correction factor was developed as a function of Kn. For Kn = 0 (continuum flow), the momentum correction factor was found to be 1.33, which decreases by the increase in Kn may even reach near 1 for the transition flow regime. We observed that for passage of viscous flow through a nanotube with the non-uniform flow velocity, the critical continuum flow velocity for divergence decreased considerably as opposed to those for the uniform flow velocity, while by increasing Kn, the difference between the uniform and non-uniform flow models may be reduced. In the solution part, the differential transformation method (DTM) was used to solve the governing differential equations of motion.

  2. GEPOIS: a two dimensional nonuniform mesh Poisson solver

    International Nuclear Information System (INIS)

    Quintenz, J.P.; Freeman, J.R.

    1979-06-01

    A computer code is described which solves Poisson's equation for the electric potential over a two dimensional cylindrical (r,z) nonuniform mesh which can contain internal electrodes. Poisson's equation is solved over a given region subject to a specified charge distribution with either Neumann or Dirichlet perimeter boundary conditions and with Dirichlet boundary conditions on internal surfaces. The static electric field is also computed over the region with special care given to normal electric field components at boundary surfaces

  3. An efficient, versatile and scalable pattern growth approach to mine frequent patterns in unaligned protein sequences.

    Science.gov (United States)

    Ye, Kai; Kosters, Walter A; Ijzerman, Adriaan P

    2007-03-15

    Pattern discovery in protein sequences is often based on multiple sequence alignments (MSA). The procedure can be computationally intensive and often requires manual adjustment, which may be particularly difficult for a set of deviating sequences. In contrast, two algorithms, PRATT2 (http//www.ebi.ac.uk/pratt/) and TEIRESIAS (http://cbcsrv.watson.ibm.com/) are used to directly identify frequent patterns from unaligned biological sequences without an attempt to align them. Here we propose a new algorithm with more efficiency and more functionality than both PRATT2 and TEIRESIAS, and discuss some of its applications to G protein-coupled receptors, a protein family of important drug targets. In this study, we designed and implemented six algorithms to mine three different pattern types from either one or two datasets using a pattern growth approach. We compared our approach to PRATT2 and TEIRESIAS in efficiency, completeness and the diversity of pattern types. Compared to PRATT2, our approach is faster, capable of processing large datasets and able to identify the so-called type III patterns. Our approach is comparable to TEIRESIAS in the discovery of the so-called type I patterns but has additional functionality such as mining the so-called type II and type III patterns and finding discriminating patterns between two datasets. The source code for pattern growth algorithms and their pseudo-code are available at http://www.liacs.nl/home/kosters/pg/.

  4. New fundamental insights into capacitance modeling of laterally nonuniform MOS devices

    NARCIS (Netherlands)

    Aarts, A.C.T.; Hout, van der R.; Paasschens, J.C.J.; Scholten, A.J.; Willemsen, M.B.; Klaassen, D.B.M.

    2006-01-01

    In compact transistor modeling for circuit simulation, the capacitances of conventional MOS devices are commonly determined as the derivatives of terminal charges, which in their turn are obtained from the so-called Ward-Dutton charge partitioning scheme. For devices with a laterally nonuniform

  5. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    S. Szillasi

    2013-01-01

    The CMS detector has been gradually opened and whenever a wheel became exposed the first operation was the removal of the MABs, the sensor structures of the Hardware Barrel Alignment System. By the last days of June all 36 MABs have arrived at the Alignment Lab at the ISR where, as part of the Alignment Upgrade Project, they are refurbished with new Survey target holders. Their electronic checkout is on the way and finally they will be recalibrated. During LS1 the alignment system will be upgraded in order to allow more precise reconstruction of the MB4 chambers in Sector 10 and Sector 4. This requires new sensor components, so called MiniMABs (pictured below), that have already been assembled and calibrated. Image 6: Calibrated MiniMABs are ready for installation For the track-based alignment, the systematic uncertainties of the algorithm are under scrutiny: this study will enable the production of an improved Monte Carlo misalignment scenario and to update alignment position errors eventually, crucial...

  6. Improving model construction of profile HMMs for remote homology detection through structural alignment

    Directory of Open Access Journals (Sweden)

    Zaverucha Gerson

    2007-11-01

    Full Text Available Abstract Background Remote homology detection is a challenging problem in Bioinformatics. Arguably, profile Hidden Markov Models (pHMMs are one of the most successful approaches in addressing this important problem. pHMM packages present a relatively small computational cost, and perform particularly well at recognizing remote homologies. This raises the question of whether structural alignments could impact the performance of pHMMs trained from proteins in the Twilight Zone, as structural alignments are often more accurate than sequence alignments at identifying motifs and functional residues. Next, we assess the impact of using structural alignments in pHMM performance. Results We used the SCOP database to perform our experiments. Structural alignments were obtained using the 3DCOFFEE and MAMMOTH-mult tools; sequence alignments were obtained using CLUSTALW, TCOFFEE, MAFFT and PROBCONS. We performed leave-one-family-out cross-validation over super-families. Performance was evaluated through ROC curves and paired two tailed t-test. Conclusion We observed that pHMMs derived from structural alignments performed significantly better than pHMMs derived from sequence alignment in low-identity regions, mainly below 20%. We believe this is because structural alignment tools are better at focusing on the important patterns that are more often conserved through evolution, resulting in higher quality pHMMs. On the other hand, sensitivity of these tools is still quite low for these low-identity regions. Our results suggest a number of possible directions for improvements in this area.

  7. Improving model construction of profile HMMs for remote homology detection through structural alignment.

    Science.gov (United States)

    Bernardes, Juliana S; Dávila, Alberto M R; Costa, Vítor S; Zaverucha, Gerson

    2007-11-09

    Remote homology detection is a challenging problem in Bioinformatics. Arguably, profile Hidden Markov Models (pHMMs) are one of the most successful approaches in addressing this important problem. pHMM packages present a relatively small computational cost, and perform particularly well at recognizing remote homologies. This raises the question of whether structural alignments could impact the performance of pHMMs trained from proteins in the Twilight Zone, as structural alignments are often more accurate than sequence alignments at identifying motifs and functional residues. Next, we assess the impact of using structural alignments in pHMM performance. We used the SCOP database to perform our experiments. Structural alignments were obtained using the 3DCOFFEE and MAMMOTH-mult tools; sequence alignments were obtained using CLUSTALW, TCOFFEE, MAFFT and PROBCONS. We performed leave-one-family-out cross-validation over super-families. Performance was evaluated through ROC curves and paired two tailed t-test. We observed that pHMMs derived from structural alignments performed significantly better than pHMMs derived from sequence alignment in low-identity regions, mainly below 20%. We believe this is because structural alignment tools are better at focusing on the important patterns that are more often conserved through evolution, resulting in higher quality pHMMs. On the other hand, sensitivity of these tools is still quite low for these low-identity regions. Our results suggest a number of possible directions for improvements in this area.

  8. Temperature dependence of o-Ps annihilation lifetime in non-uniform cylindrical pores in comparison with ETE model

    Energy Technology Data Exchange (ETDEWEB)

    Khaghani, Morteza, E-mail: m.khaghani@pgs.usb.ac.ir; Mehmandoost-Khajeh-Dad, Ali Akbar, E-mail: mehmandoost@phys.usb.ac.ir

    2017-04-01

    Highlights: • Using the well known multi-physics program COMSOL calculating o-Ps annihilation lifetime in complex geometries. • Investigation of shape non-uniformity of cylindrical pores on o-Ps annihilation lifetime. • Verifying temperature dependency of o-Ps lifetime in non-uniform cylindrical pores. • Suggesting PALS at low temperature as a method to verify pore uniformity in porous material. - Abstract: Ortho-positronium (o-Ps) annihilation lifetime was calculated in non-uniform cylinder-shaped pores by solving Schrodinger equation using a well-known multi-physics program called COMSOL. The o-Ps annihilation lifetime variation in terms of temperature was calculated on the basis of ETE model via a numerical method. The COMSOL simulations indicate that as long as the pore is uniform cylinder-shaped, the results agree with those of two-dimensional ETE model, whereas deformations in the cylinder shape (indentation or protrusion) change the temperature behavior of ETE model and, thereby, higher values are predicted for o-Ps lifetime in the pore at lower temperatures. The geometry of the non-uniform cylinder-shaped pores, which is accompanied by empirical evidence, can be used for the analysis of empirical results obtained from positron lifetime spectroscopy in different temperatures.

  9. Alignment of non-covalent interactions at protein-protein interfaces.

    Directory of Open Access Journals (Sweden)

    Hongbo Zhu

    Full Text Available BACKGROUND: The study and comparison of protein-protein interfaces is essential for the understanding of the mechanisms of interaction between proteins. While there are many methods for comparing protein structures and protein binding sites, so far no methods have been reported for comparing the geometry of non-covalent interactions occurring at protein-protein interfaces. METHODOLOGY/PRINCIPAL FINDINGS: Here we present a method for aligning non-covalent interactions between different protein-protein interfaces. The method aligns the vector representations of van der Waals interactions and hydrogen bonds based on their geometry. The method has been applied to a dataset which comprises a variety of protein-protein interfaces. The alignments are consistent to a large extent with the results obtained using two other complementary approaches. In addition, we apply the method to three examples of protein mimicry. The method successfully aligns respective interfaces and allows for recognizing conserved interface regions. CONCLUSIONS/SIGNIFICANCE: The Galinter method has been validated in the comparison of interfaces in which homologous subunits are involved, including cases of mimicry. The method is also applicable to comparing interfaces involving non-peptidic compounds. Galinter assists users in identifying local interface regions with similar patterns of non-covalent interactions. This is particularly relevant to the investigation of the molecular basis of interaction mimicry.

  10. MaxAlign: maximizing usable data in an alignment

    DEFF Research Database (Denmark)

    Oliveira, Rodrigo Gouveia; Sackett, Peter Wad; Pedersen, Anders Gorm

    2007-01-01

    Align. In this paper we also introduce a new simple measure of tree similarity, Normalized Symmetric Similarity (NSS) that we consider useful for comparing tree topologies. CONCLUSION: We demonstrate how MaxAlign is helpful in detecting misaligned or defective sequences without requiring manual inspection. We also...

  11. Impulsive response of nonuniform density liquid in a laterally excited tank

    International Nuclear Information System (INIS)

    Tang, Y.; Chang, Y.W.

    1994-04-01

    A study on the impulsive component of the dynamic response of a liquid of nonuniform density in a tank undergoing lateral base excitations is presented. The system considered is a circular cylindrical tank containing an incompressible and inviscid liquid whose density increases with the liquid depth. The density distribution along the depth can be of any arbitrary continuous or discontinuous function. In the analysis, the liquid field is divided into n layers. The thickness of the liquid layers can be different, but the density of each liquid layer is considered to be uniform and is equal to the value of the original liquid density at the mid-height of that layer. The problem is solved by the eigenfunction expansion in conjunction with the transfer matrix technique. The effect of the nonuniform liquid density on the impulsive component of the dynamic response is illustrated in a numerical example in which the linear and cosine distributions of the liquid density are assumed. The response quantities examined include the impulsive pressure, base shear and moments. The results are presented in tabular and graphical forms. It is found that the impulsive pressure distribution along the tank wall is not sensitive to the detailed distribution function of the density, and the base shear and moments for the nonuniform liquid can be estimated by assuming an equivalent uniform liquid density that preserves the total liquid weight. The effect of tank flexibility is assessed by a simple approach in which the response quantities for flexible tanks are evaluated by simplified equations

  12. Aligning for Innovation - Alignment Strategy to Drive Innovation

    Science.gov (United States)

    Johnson, Hurel; Teltschik, David; Bussey, Horace, Jr.; Moy, James

    2010-01-01

    With the sudden need for innovation that will help the country achieve its long-term space exploration objectives, the question of whether NASA is aligned effectively to drive the innovation that it so desperately needs to take space exploration to the next level should be entertained. Authors such as Robert Kaplan and David North have noted that companies that use a formal system for implementing strategy consistently outperform their peers. They have outlined a six-stage management systems model for implementing strategy, which includes the aligning of the organization towards its objectives. This involves the alignment of the organization from the top down. This presentation will explore the impacts of existing U.S. industrial policy on technological innovation; assess the current NASA organizational alignment and its impacts on driving technological innovation; and finally suggest an alternative approach that may drive the innovation needed to take the world to the next level of space exploration, with NASA truly leading the way.

  13. SMC Progressively Aligns Chromosomal Arms in Caulobacter crescentus but Is Antagonized by Convergent Transcription

    Directory of Open Access Journals (Sweden)

    Ngat T. Tran

    2017-08-01

    Full Text Available The structural maintenance of chromosomes (SMC complex plays an important role in chromosome organization and segregation in most living organisms. In Caulobacter crescentus, SMC is required to align the left and the right arms of the chromosome that run in parallel down the long axis of the cell. However, the mechanism of SMC-mediated alignment of chromosomal arms remains elusive. Here, using genome-wide methods and microscopy of single cells, we show that Caulobacter SMC is recruited to the centromeric parS site and that SMC-mediated arm alignment depends on the chromosome-partitioning protein ParB. We provide evidence that SMC likely tethers the parS-proximal regions of the chromosomal arms together, promoting arm alignment. Furthermore, we show that highly transcribed genes near parS that are oriented against SMC translocation disrupt arm alignment, suggesting that head-on transcription interferes with SMC translocation. Our results demonstrate a tight interdependence of bacterial chromosome organization and global patterns of transcription.

  14. Analysis of single blow effectiveness in non-uniform parallel plate regenerators

    DEFF Research Database (Denmark)

    Jensen, Jesper Buch; Bahl, Christian Robert Haffenden; Engelbrecht, Kurt

    2011-01-01

    Non-uniform distributions of plate spacings in parallel plate regenerators have been found to induce loss of performance. In this paper, it has been investigated how variations of three geometric parameters (the aspect ratio, the porosity, and the standard deviation of the plate spacing) affects...

  15. Critical opalescence of neutrons in nonuniform liquid in the gravitational field

    International Nuclear Information System (INIS)

    Sugakov, V.I.; Chalyj, A.V.; Chernenko, L.M.

    1990-01-01

    The altitude dependence of the refractive index and refractive angle of the neutron beam in a nonuniform liquid near the critical point is investigated. The neutron wave function in a passing beam as well as monochromatic transmission and reflection coefficients of neutrons are found

  16. Analysis of the Elastic Large Deflection Behavior for Metal Plates under Nonuniformly Distributed Lateral Pressure with In-Plane Loads

    Directory of Open Access Journals (Sweden)

    Jeom Kee Paik

    2012-01-01

    Full Text Available The Galerkin method is applied to analyze the elastic large deflection behavior of metal plates subject to a combination of in-plane loads such as biaxial loads, edge shear and biaxial inplane bending moments, and uniformly or nonuniformly distributed lateral pressure loads. The motive of the present study was initiated by the fact that metal plates of ships and ship-shaped offshore structures at sea are often subjected to non-uniformly distributed lateral pressure loads arising from cargo or water pressure, together with inplane axial loads or inplane bending moments, but the current practice of the maritime industry usually applies some simplified design methods assuming that the non-uniform pressure distribution in the plates can be replaced by an equivalence of uniform pressure distribution. Applied examples are presented, demonstrating that the current plate design methods of the maritime industry may be inappropriate when the non-uniformity of lateral pressure loads becomes more significant.

  17. Design and fabrication of carbon nanotube field-emission cathode with coaxial gate and ballast resistor.

    Science.gov (United States)

    Sun, Yonghai; Yeow, John T W; Jaffray, David A

    2013-10-25

    A low density vertically aligned carbon nanotube-based field-emission cathode with a ballast resistor and coaxial gate is designed and fabricated. The ballast resistor can overcome the non-uniformity of the local field-enhancement factor at the emitter apex. The self-aligned fabrication process of the coaxial gate can avoid the effects of emitter tip misalignment and height non-uniformity. Copyright © 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  18. A technique for aligning sextupole systems using beam optics

    International Nuclear Information System (INIS)

    Chao, Yu-Chiu.

    1992-03-01

    A technique for beam based alignment of sextupole system is developed exploiting the enhancement effect of orbit differences by the sextupoles. This technique can in principle be applied to sextupole or sextupole strings with controlled orbit pattern and BPM configurations. This paper will discuss the theoretical basis, special optimization considerations and expected accuracy. Application to the SLC final focus is also discussed

  19. Control rod housing alignment

    International Nuclear Information System (INIS)

    Dixon, R.C.; Deaver, G.A.; Punches, J.R.; Singleton, G.E.; Erbes, J.G.; Offer, H.P.

    1990-01-01

    This patent describes a process for measuring the vertical alignment between a hole in a core plate and the top of a corresponding control rod drive housing within a boiling water reactor. It comprises: providing an alignment apparatus. The alignment apparatus including a lower end for fitting to the top of the control rod drive housing; an upper end for fitting to the aperture in the core plate, and a leveling means attached to the alignment apparatus to read out the difference in angularity with respect to gravity, and alignment pin registering means for registering to the alignment pin on the core plate; lowering the alignment device on a depending support through a lattice position in the top guide through the hole in the core plate down into registered contact with the top of the control rod drive housing; registering the upper end to the sides of the hole in the core plate; registering the alignment pin registering means to an alignment pin on the core plate to impart to the alignment device the required angularity; and reading out the angle of the control rod drive housing with respect to the hole in the core plate through the leveling devices whereby the angularity of the top of the control rod drive housing with respect to the hole in the core plate can be determined

  20. CLINICAL STUDY OF THE CHRONOLOGICAL CHANGES IN KNEE ALIGNMENT PATTERN IN NORMAL SOUTH-EAST NIGERIAN CHILDREN AGED BETWEEN 0 AND 5 YEARS

    Directory of Open Access Journals (Sweden)

    Ezeuko V.C

    2010-01-01

    Full Text Available The purpose of this study is to establish the chronological changes in knee alignment pattern in normal South-East Nigerian children aged between 0 and 5 years. A total number of 1450 subjects (680 males and 770 females were used for the study. The intercondylar/intermalleolar distances were measured using a vernier caliper with the subjects standing erect in anatomical position to determine straight knee, genu valgum and genu varum. The data was analysed with Microsoft Excel version 2007. The prevalence was presented as percentage (%.The result showed that the subjects have varum by the first year of life, prevalently genu valgum in type by the second year, valgum by the third year, neutral by the fourth and fifth year.

  1. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    G. Gomez

    2012-01-01

      A new muon alignment has been produced for 2012 A+B data reconstruction. It uses the latest Tracker alignment and single-muon data samples to align both DTs and CSCs. Physics validation has been performed and shows a modest improvement in stand-alone muon momentum resolution in the barrel, where the alignment is essentially unchanged from the previous version. The reference-target track-based algorithm using only collision muons is employed for the first time to align the CSCs, and a substantial improvement in resolution is observed in the endcap and overlap regions for stand-alone muons. This new alignment is undergoing the approval process and is expected to be deployed as part of a new global tag in the beginning of December. The pT dependence of the φ-bias in curvature observed in Monte Carlo was traced to a relative vertical misalignment between the Tracker and barrel muon systems. Moving the barrel as a whole to match the Tracker cures this pT dependence, leaving only the &phi...

  2. Simulation of beamline alignment operations

    International Nuclear Information System (INIS)

    Annese, C; Miller, M G.

    1999-01-01

    The CORBA-based Simulator was a Laboratory Directed Research and Development (LDRD) project that applied simulation techniques to explore critical questions about distributed control systems. The simulator project used a three-prong approach that studied object-oriented distribution tools, computer network modeling, and simulation of key control system scenarios. The National Ignition Facility's (NIF) optical alignment system was modeled to study control system operations. The alignment of NIF's 192 beamlines is a large complex operation involving more than 100 computer systems and 8000 mechanized devices. The alignment process is defined by a detailed set of procedures; however, many of the steps are deterministic. The alignment steps for a poorly aligned component are similar to that of a nearly aligned component; however, additional operations/iterations are required to complete the process. Thus, the same alignment operations will require variable amounts of time to perform depending on the current alignment condition as well as other factors. Simulation of the alignment process is necessary to understand beamline alignment time requirements and how shared resources such as the Output Sensor and Target Alignment Sensor effect alignment efficiency. The simulation has provided alignment time estimates and other results based on documented alignment procedures and alignment experience gained in the laboratory. Computer communication time, mechanical hardware actuation times, image processing algorithm execution times, etc. have been experimentally determined and incorporated into the model. Previous analysis of alignment operations utilized average implementation times for all alignment operations. Resource sharing becomes rather simple to model when only average values are used. The time required to actually implement the many individual alignment operations will be quite dynamic. The simulation model estimates the time to complete an operation using

  3. CAB-Align: A Flexible Protein Structure Alignment Method Based on the Residue-Residue Contact Area.

    Directory of Open Access Journals (Sweden)

    Genki Terashi

    Full Text Available Proteins are flexible, and this flexibility has an essential functional role. Flexibility can be observed in loop regions, rearrangements between secondary structure elements, and conformational changes between entire domains. However, most protein structure alignment methods treat protein structures as rigid bodies. Thus, these methods fail to identify the equivalences of residue pairs in regions with flexibility. In this study, we considered that the evolutionary relationship between proteins corresponds directly to the residue-residue physical contacts rather than the three-dimensional (3D coordinates of proteins. Thus, we developed a new protein structure alignment method, contact area-based alignment (CAB-align, which uses the residue-residue contact area to identify regions of similarity. The main purpose of CAB-align is to identify homologous relationships at the residue level between related protein structures. The CAB-align procedure comprises two main steps: First, a rigid-body alignment method based on local and global 3D structure superposition is employed to generate a sufficient number of initial alignments. Then, iterative dynamic programming is executed to find the optimal alignment. We evaluated the performance and advantages of CAB-align based on four main points: (1 agreement with the gold standard alignment, (2 alignment quality based on an evolutionary relationship without 3D coordinate superposition, (3 consistency of the multiple alignments, and (4 classification agreement with the gold standard classification. Comparisons of CAB-align with other state-of-the-art protein structure alignment methods (TM-align, FATCAT, and DaliLite using our benchmark dataset showed that CAB-align performed robustly in obtaining high-quality alignments and generating consistent multiple alignments with high coverage and accuracy rates, and it performed extremely well when discriminating between homologous and nonhomologous pairs of proteins

  4. CAB-Align: A Flexible Protein Structure Alignment Method Based on the Residue-Residue Contact Area.

    Science.gov (United States)

    Terashi, Genki; Takeda-Shitaka, Mayuko

    2015-01-01

    Proteins are flexible, and this flexibility has an essential functional role. Flexibility can be observed in loop regions, rearrangements between secondary structure elements, and conformational changes between entire domains. However, most protein structure alignment methods treat protein structures as rigid bodies. Thus, these methods fail to identify the equivalences of residue pairs in regions with flexibility. In this study, we considered that the evolutionary relationship between proteins corresponds directly to the residue-residue physical contacts rather than the three-dimensional (3D) coordinates of proteins. Thus, we developed a new protein structure alignment method, contact area-based alignment (CAB-align), which uses the residue-residue contact area to identify regions of similarity. The main purpose of CAB-align is to identify homologous relationships at the residue level between related protein structures. The CAB-align procedure comprises two main steps: First, a rigid-body alignment method based on local and global 3D structure superposition is employed to generate a sufficient number of initial alignments. Then, iterative dynamic programming is executed to find the optimal alignment. We evaluated the performance and advantages of CAB-align based on four main points: (1) agreement with the gold standard alignment, (2) alignment quality based on an evolutionary relationship without 3D coordinate superposition, (3) consistency of the multiple alignments, and (4) classification agreement with the gold standard classification. Comparisons of CAB-align with other state-of-the-art protein structure alignment methods (TM-align, FATCAT, and DaliLite) using our benchmark dataset showed that CAB-align performed robustly in obtaining high-quality alignments and generating consistent multiple alignments with high coverage and accuracy rates, and it performed extremely well when discriminating between homologous and nonhomologous pairs of proteins in both

  5. BinAligner: a heuristic method to align biological networks.

    Science.gov (United States)

    Yang, Jialiang; Li, Jun; Grünewald, Stefan; Wan, Xiu-Feng

    2013-01-01

    The advances in high throughput omics technologies have made it possible to characterize molecular interactions within and across various species. Alignments and comparison of molecular networks across species will help detect orthologs and conserved functional modules and provide insights on the evolutionary relationships of the compared species. However, such analyses are not trivial due to the complexity of network and high computational cost. Here we develop a mixture of global and local algorithm, BinAligner, for network alignments. Based on the hypotheses that the similarity between two vertices across networks would be context dependent and that the information from the edges and the structures of subnetworks can be more informative than vertices alone, two scoring schema, 1-neighborhood subnetwork and graphlet, were introduced to derive the scoring matrices between networks, besides the commonly used scoring scheme from vertices. Then the alignment problem is formulated as an assignment problem, which is solved by the combinatorial optimization algorithm, such as the Hungarian method. The proposed algorithm was applied and validated in aligning the protein-protein interaction network of Kaposi's sarcoma associated herpesvirus (KSHV) and that of varicella zoster virus (VZV). Interestingly, we identified several putative functional orthologous proteins with similar functions but very low sequence similarity between the two viruses. For example, KSHV open reading frame 56 (ORF56) and VZV ORF55 are helicase-primase subunits with sequence identity 14.6%, and KSHV ORF75 and VZV ORF44 are tegument proteins with sequence identity 15.3%. These functional pairs can not be identified if one restricts the alignment into orthologous protein pairs. In addition, BinAligner identified a conserved pathway between two viruses, which consists of 7 orthologous protein pairs and these proteins are connected by conserved links. This pathway might be crucial for virus packing and

  6. Prediction of molecular alignment of nucleic acids in aligned media

    International Nuclear Information System (INIS)

    Wu Bin; Petersen, Michael; Girard, Frederic; Tessari, Marco; Wijmenga, Sybren S.

    2006-01-01

    We demonstrate - using the data base of all deposited DNA and RNA structures aligned in Pf1-medium and RDC refined - that for nucleic acids in a Pf1-medium the electrostatic alignment tensor can be predicted reliably and accurately via a simple and fast calculation based on the gyration tensor spanned out by the phosphodiester atoms. The rhombicity is well predicted over its full range from 0 to 0.66, while the alignment tensor orientation is predicted correctly for rhombicities up to ca. 0.4, for larger rhombicities it appears to deviate somewhat more than expected based on structural noise and measurement error. This simple analytical approach is based on the Debye-Huckel approximation for the electrostatic interaction potential, valid at distances sufficiently far away from a poly-ionic charged surface, a condition naturally enforced when the charge of alignment medium and solute are of equal sign, as for nucleic acids in a Pf1-phage medium. For the usual salt strengths and nucleic acid sizes, the Debye-Huckel screening length is smaller than the nucleic acid size, but large enough for the collective of Debye-Huckel spheres to encompass the whole molecule. The molecular alignment is then purely electrostatic, but it's functional form is under these conditions similar to that for steric alignment. The proposed analytical expression allows for very fast calculation of the alignment tensor and hence RDCs from the conformation of the nucleic acid molecule. This information provides opportunities for improved structure determination of nucleic acids, including better assessment of dynamics in (multi-domain) nucleic acids and the possibility to incorporate alignment tensor prediction from shape directly into the structure calculation process. The procedures are incorporated into MATLAB scripts, which are available on request

  7. Effect of non-uniform surface resistance on the quality factor of superconducting niobium cavity

    Science.gov (United States)

    Tan, Weiwei; Lu, Xiangyang; Yang, Ziqin; Zhao, Jifei; Yang, Deyu; Yang, Yujia

    2016-08-01

    The formula Rs = G /Q0 is commonly used in the calculation of the surface resistance of radio frequency niobium superconducting cavities. The applying of such equation is under the assumption that surface resistance is consistent over the cavity. However, the distribution of the magnetic field varies over the cavity. The magnetic field in the equator is much higher than that in the iris. According to Thermal Feedback Theory, it leads non-uniform distribution of the density of heat flux, which results in a different temperature distribution along the cavity inter surface. The BCS surface resistance, which depends largely on the temperature, is different in each local inner surface. In this paper, the effect of surface non-uniform resistance on the quality factor has been studied, through the calculation of Q0 in the original definition of it. The results show that it is necessary to consider the non-uniform distribution of magnetic field when the accelerating field is above 20 MV/m for TESLA cavities. Also, the effect of inhomogeneity of residual resistance on the quality factor is discussed. Its distribution barely affects the quality factor.

  8. Nonuniform Sparse Data Clustering Cascade Algorithm Based on Dynamic Cumulative Entropy

    Directory of Open Access Journals (Sweden)

    Ning Li

    2016-01-01

    Full Text Available A small amount of prior knowledge and randomly chosen initial cluster centers have a direct impact on the accuracy of the performance of iterative clustering algorithm. In this paper we propose a new algorithm to compute initial cluster centers for k-means clustering and the best number of the clusters with little prior knowledge and optimize clustering result. It constructs the Euclidean distance control factor based on aggregation density sparse degree to select the initial cluster center of nonuniform sparse data and obtains initial data clusters by multidimensional diffusion density distribution. Multiobjective clustering approach based on dynamic cumulative entropy is adopted to optimize the initial data clusters and the best number of the clusters. The experimental results show that the newly proposed algorithm has good performance to obtain the initial cluster centers for the k-means algorithm and it effectively improves the clustering accuracy of nonuniform sparse data by about 5%.

  9. Prevention of Bridge Scour with Non-uniform Circular Piers Plane under Steady Flows

    Science.gov (United States)

    Chen, Hsing-Ting; Wang, Chuan-Yi

    2017-04-01

    River bed scour and deposit variation extremely severe because of most of rivers are steep and rapid flows, and river discharge extremely unstable and highly unsteady during different seasons in Taiwan. In addition to the obstruction of piers foundation, it causes local scour and threatens the safety of bridges. In the past, riprap, wire gabion or wrap pier works were adopted as the protections of piers foundation, but there were no effectual outcomes. The events of break off piers still happen sometimes. For example, typhoon Kalmaegi (2008) and Morakot (2009) caused heavy damages on Ho-Fon bridge in the Da-jia river and Shuang-Yuan bridge in the Kao-Ping river, respectively. Accordingly, to understand the piers scour system and propose an appropriate protection of piers foundation becomes an important topic for this study currently. This research improves the protection works of the existing uniform bridge pier (diameter D) to ensure the safety of the bridge. The non-uniform plane of circular piers (diameter D*) are placed on the top of a bridge pier foundation to reduce the down flow impacting energy and scour by its' surface roughness characteristics. This study utilize hydraulic models to simulate local scour depth and scour depth change with time for non-uniform pier diameter ratio D/D* of 0.3,0.4,0.5,0.6,0.7 and 0.8, and different type pier and initial bed level (Y) relative under the foundation top elevation under steady flows of V/Vc=0.95,0.80 and 0.65. The research results show that the scour depth increases with an increase of flow intensity (V/Vc) under different types of steady flow hydrographs. The scour depth decreases with increase of initial bed level (Y=+0.2D*,0D*and -0.2D*) relative under the foundation top elevation of the different type pier. The maximum scour depth occurred in the front of the pier for all conditions. Because of the scouring retardation by the non-uniform plane of foundation, the scour depth is reduced for the un-exposed bridge

  10. Generation of zonal magnetic fields by drift waves in a current carrying nonuniform magnetoplasma

    International Nuclear Information System (INIS)

    Shukla, Nitin; Shukla, P.K.

    2010-01-01

    It is shown that zonal magnetic fields (ZMFs) can be nonlinearly excited by incoherent drift waves (DWs) in a current carrying nonuniform magnetoplasma. The dynamics of incoherent DWs in the presence of ZMFs is governed by a wave-kinetic equation. The governing equation for ZMFs in the presence of nonlinear advection force of the DWs is obtained from the parallel component of the electron momentum equation and the Faraday law. Standard techniques are used to derive a nonlinear dispersion relation, which depicts instability via which ZMFs are excited in plasmas. ZMFs may inhibit the turbulent cross-field particle and energy transport in a nonuniform magnetoplasma.

  11. A new prosthetic alignment device to read and record prosthesis alignment data.

    Science.gov (United States)

    Pirouzi, Gholamhossein; Abu Osman, Noor Azuan; Ali, Sadeeq; Davoodi Makinejad, Majid

    2017-12-01

    Prosthetic alignment is an essential process to rehabilitate patients with amputations. This study presents, for the first time, an invented device to read and record prosthesis alignment data. The digital device consists of seven main parts: the trigger, internal shaft, shell, sensor adjustment button, digital display, sliding shell, and tip. The alignment data were read and recorded by the user or a computer to replicate prosthesis adjustment for future use or examine the sequence of changes in alignment and its effect on the posture of the patient. Alignment data were recorded at the anterior/posterior and medial/lateral positions for five patients. Results show the high level of confidence to record alignment data and replicate adjustments. Therefore, the device helps patients readjust their prosthesis by themselves, or prosthetists to perform adjustment for patients and analyze the effects of malalignment.

  12. Compact Elliptically Tapered Slot Antenna with Non-uniform Corrugations for Ultra-wideband Applications

    Directory of Open Access Journals (Sweden)

    F. G. Zhu

    2013-04-01

    Full Text Available A small size elliptically tapered slot antenna (ETSA fed by coplanar waveguide (CPW for ultra-wideband (UWB applications is proposed. It is printed on an FR4 substrate and occupies a size of 37×34×0.8 mm^3. A pair of quarter circular shapes is etched on the radiator to reduce the size. To overcome the limitation of uniform corrugation, non-uniform corrugation is utilized to reduce the cross-polarization level. A parametric study is carried out to investigate the effects of circular cut and corrugations. In order to validate the design, a prototype is fabricated and measured. Both simulated and measured results confirm that the proposed antenna achieves a good performance of a reflection coefficient below -10 dB from 3.1 GHz to 10.6 GHz, including a maximum antenna gain of 8.1dBi, directional patterns in the end-fire direction, low cross-polarization level below -20 dB and linear phase response. The antenna is promising for applications in UWB impulse radar imaging.

  13. Field-aligned currents and convection patterns in the Southern Polar Cap during stable northward, southward, and azimuthal IMF

    International Nuclear Information System (INIS)

    Papitashvili, V.O.; Belov, B.A.; Gromova, L.I.

    1989-01-01

    Equivalent ionospheric current patterns are derived from ground-based geomagnetic observations for events on 11-12 November 1979 (B/sub z/ >> 0), 24 November 1981 (B/sub z/ > 0) (B/sub y/ >> 0), and 25-26 November 1979 (B/sub y/ 0 . Due to stable external conditions, it is possible to calculate the field-aligned current (FAC) density within cells formed by two adjacent stations by taking into account the uniform conductivity of the summer polar ionosphere. These results completely correspond to regressional analysis of interplanetary magnetic fields (IMF) and ground-based geomagnetic data, and also to satellite observations of the NBZ current system. During stable southward IMF a new result was obtained, a reversal of antisunward convection flow is identified, and an NBZ-like FAC system is restored in the central part of the southern polar cap. The authors conclude that there may be an additional NBZ-like FAC system poleward of -85 0 , which is independent of the IMF and is generated by the quasi-viscous interaction between solar-wind plasma and high-latitude lobes of the magnetospheric tail

  14. Mechanism and scaling for convection of isolated structures in nonuniformly magnetized plasmas

    DEFF Research Database (Denmark)

    Garcia, O.E.; Bian, N.H.; Naulin, V.

    2005-01-01

    Large-scale radial advection of isolated structures in nonuniformly magnetized plasmas is investigated. The underlying mechanism considered is due to the nonlinear evolution of interchange motions, without any presumption of plasma sheaths. Theoretical arguments supported by numerical simulations...

  15. Alignment of the TFTR bumper limiter

    International Nuclear Information System (INIS)

    Barnes, G.W.; Owens, D.K.; Loesser, G.D.; Ulrickson, M.

    1989-01-01

    The TFTR Bumper Limiter (BL) is an axisymmetric toroidal limiter mounted on the inner wall of the vacuum vessel. It subtends 120 degree poloidally and has a surface area of 22 m 2 . The plasma facing surface consists of 1,000 kg of graphite tiles mounted on watercooled Inconel backing plates. During the initial installation in the Spring of 1985, the limiter surface was aligned to the toroidal magnetic field by mechanical and magnetic measurements to an estimated accuracy of ±2 mm. During subsequent operation, especially in the 1988 run period in which 30 MW of Neutral Beam Injection routinely occurred, several tiles at points on the limiter which protruded slightly into the plasma were severely damaged. The damage, cracked and spalled tiles, is believed to be initiated by high energy disruptions and aggravated by normal high power operation. The damage pattern and temperature rise during normal operation are consistent with this interpretation. A vacuum vessel opening to replace the damaged tiles and realign the limiter was required. The bumper limiter was reshaped to be circular to ±0.5 mm at the midplane by means of mechanical measurements in order to better distribute the heat loads and eliminate hot spots. The ±0.5 mm accuracy is determined by the variation in individual tile thickness which is ±0.5 mm. This paper describes the methods used to mechanically align the limiter and presents evidence based on machine operation with plasma that the limiter is reasonably well aligned with the toroidal field. Future work dealing with the alignment of the total limiter to the toroidal field using mechanical and magnetic measurements and the replacement of a subset of the carbon tiles with carbon-carbon composite material is also discussed. 7 refs., 4 figs

  16. Wastewater diffusive dilution and sedimentation of the fine contaminated particles for nonuniform flow in open channels

    OpenAIRE

    Lyapin Anton; Lyapin Valery

    2018-01-01

    The influence of non-uniformity on mass transfer processes in open channels have been investigated under the action of urbanization factors. The study is related to the urgent problem of environmental degradation of water objects in urbanized areas. It is known that the water quality in the water objects depends on the manner in which the contaminants spread how they mix with the river water and diluted by it. The main results of the study consist of recommendations to incorporate non-uniform...

  17. Alignment and focusing device for a multibeam laser system

    International Nuclear Information System (INIS)

    Sweatt, W.C.

    1980-01-01

    Large inertial confinement fusion laser systems have many beams focusing on a small target. The Antares system is a 24-beam CO 2 pulse laser. To produce uniform illumination, the 24 beams must be individually focused on (or near) the target's surface in a symmetric pattern. To assess the quality of a given beam, we will locate a Smartt (point diffraction) interferometer at the desired focal point and illuminate it with an alignment laser. The resulting fringe pattern shows defocus, lateral misalignment, and beam aberrations; all of which can be minimized by tilting and translating the focusing mirror and the preceding flat mirror. The device described in this paper will remotely translate the Smartt interferometer to any position in the target space and point it in any direction using a two-axis gimbal. The fringes produced by the interferometer are relayed out of the target vacuum shell to a vidicon by a train or prisms. We are designing four separate snap-in heads to mount on the gimbal; two of which are Smartt interferometers (for 10.6 μm and 633 nm) and two for pinholes, should we wish to put an alignment beam backwards through the system

  18. Conductance dips and spin precession in a nonuniform waveguide with spin–orbit coupling

    Energy Technology Data Exchange (ETDEWEB)

    Malyshev, A. I., E-mail: malyshev@phys.unn.ru; Kozulin, A. S. [Lobachevsky Nizhny Novgorod State University (Russian Federation)

    2015-07-15

    An infinite waveguide with a nonuniformity, a segment of finite length with spin–orbit coupling, is considered in the case when the Rashba and Dresselhaus parameters are identical. Analytical expressions have been derived in the single-mode approximation for the conductance of the system for an arbitrary initial spin state. Based on numerical calculations with several size quantization modes, we have detected and described the conductance dips arising when the waves are localized in the nonuniformity due to the formation of an effective potential well in it. We show that allowance for the evanescent modes under carrier spin precession in an effective magnetic field does not lead to a change in the direction of the average spin vector at the output of the system.

  19. Pattern centric design based sensitive patterns and process monitor in manufacturing

    Science.gov (United States)

    Hsiang, Chingyun; Cheng, Guojie; Wu, Kechih

    2017-03-01

    When design rule is mitigating to smaller dimension, process variation requirement is tighter than ever and challenges the limits of device yield. Masks, lithography, etching and other processes have to meet very tight specifications in order to keep defect and CD within the margins of the process window. Conventionally, Inspection and metrology equipments are utilized to monitor and control wafer quality in-line. In high throughput optical inspection, nuisance and review-classification become a tedious labor intensive job in manufacturing. Certain high-resolution SEM images are taken to validate defects after optical inspection. These high resolution SEM images catch not only optical inspection highlighted point, also its surrounding patterns. However, this pattern information is not well utilized in conventional quality control method. Using this complementary design based pattern monitor not only monitors and analyzes the variation of patterns sensitivity but also reduce nuisance and highlight defective patterns or killer defects. After grouping in either single or multiple layers, systematic defects can be identified quickly in this flow. In this paper, we applied design based pattern monitor in different layers to monitor process variation impacts on all kinds of patterns. First, the contour of high resolutions SEM image is extracted and aligned to design with offset adjustment and fine alignment [1]. Second, specified pattern rules can be applied on design clip area, the same size as SEM image, and form POI (pattern of interest) areas. Third, the discrepancy of contour and design measurement at different pattern types in measurement blocks. Fourth, defective patterns are reported by discrepancy detection criteria and pattern grouping [4]. Meanwhile, reported pattern defects are ranked by number and severity by discrepancy. In this step, process sensitive high repeatable systematic defects can be identified quickly Through this design based process pattern

  20. Effects of variable attachment shapes and aligner material on aligner retention.

    Science.gov (United States)

    Dasy, Hiltrud; Dasy, Andreas; Asatrian, Greg; Rózsa, Noémi; Lee, Hao-Fu; Kwak, Jin Hee

    2015-11-01

    To evaluate the retention of four types of aligners on a dental arch with various attachments. For this study, three casts were manufactured, two of which contained attachments (ellipsoid and beveled), and one without any attachments to serve as a control. Four types of aligners were thermoformed: Clear-Aligner (CA)-soft, CA-medium, and CA-hard, with various thicknesses, and Essix ACE. Measurements of vertical displacement force during aligner removal were performed with the Gabo Qualimeter Eplexor. Means and standard deviations were next compared between different aligner thicknesses and attachment shapes. CA-soft, CA-medium, and CA-hard did not present a significant increase in retention, except when used in the presence of attachments. Additionally, CA-medium and CA-hard required significantly more force for removal. Essix ACE demonstrated a significant decrease in retention when used with ellipsoid attachments. The force value for Essix ACE removal from the cast with beveled attachments was comparable to that of CA-medium. Forces for aligner removal from the model without attachments showed a linear trend. Essix ACE did not show a continuous increase in retention for each model. Overall, ellipsoid attachments did not present a significant change in retention. In contrast, beveled attachments improved retention. Ellipsoid attachments had no significant influence on the force required for aligner removal and hence on aligner retention. Essix ACE showed significantly less retention than CA-hard on the models with attachments. Furthermore, beveled attachments were observed to increase retention significantly, compared with ellipsoid attachments and when using no attachments.

  1. Two types of nonlinear wave equations for diffractive beams in bubbly liquids with nonuniform bubble number density.

    Science.gov (United States)

    Kanagawa, Tetsuya

    2015-05-01

    This paper theoretically treats the weakly nonlinear propagation of diffracted sound beams in nonuniform bubbly liquids. The spatial distribution of the number density of the bubbles, initially in a quiescent state, is assumed to be a slowly varying function of the spatial coordinates; the amplitude of variation is assumed to be small compared to the mean number density. A previous derivation method of nonlinear wave equations for plane progressive waves in uniform bubbly liquids [Kanagawa, Yano, Watanabe, and Fujikawa (2010). J. Fluid Sci. Technol. 5(3), 351-369] is extended to handle quasi-plane beams in weakly nonuniform bubbly liquids. The diffraction effect is incorporated by adding a relation that scales the circular sound source diameter to the wavelength into the original set of scaling relations composed of nondimensional physical parameters. A set of basic equations for bubbly flows is composed of the averaged equations of mass and momentum, the Keller equation for bubble wall, and supplementary equations. As a result, two types of evolution equations, a nonlinear Schrödinger equation including dissipation, diffraction, and nonuniform effects for high-frequency short-wavelength case, and a Khokhlov-Zabolotskaya-Kuznetsov equation including dispersion and nonuniform effects for low-frequency long-wavelength case, are derived from the basic set.

  2. Acoustic holography for piston sound radiation with non-uniform velocity profiles

    NARCIS (Netherlands)

    Aarts, R.M.; Janssen, A.J.E.M.

    2010-01-01

    The theory of orthogonal (Zernike) expansions of functions on a disk, as used in the diffraction theory of optical aberrations, is applied to obtain (semi-) analytical results for the radiation of sound due to a non-uniformly moving, baffled, circular piston. For this particular case, a scheme for

  3. Mask alignment system for semiconductor processing

    Science.gov (United States)

    Webb, Aaron P.; Carlson, Charles T.; Weaver, William T.; Grant, Christopher N.

    2017-02-14

    A mask alignment system for providing precise and repeatable alignment between ion implantation masks and workpieces. The system includes a mask frame having a plurality of ion implantation masks loosely connected thereto. The mask frame is provided with a plurality of frame alignment cavities, and each mask is provided with a plurality of mask alignment cavities. The system further includes a platen for holding workpieces. The platen may be provided with a plurality of mask alignment pins and frame alignment pins configured to engage the mask alignment cavities and frame alignment cavities, respectively. The mask frame can be lowered onto the platen, with the frame alignment cavities moving into registration with the frame alignment pins to provide rough alignment between the masks and workpieces. The mask alignment cavities are then moved into registration with the mask alignment pins, thereby shifting each individual mask into precise alignment with a respective workpiece.

  4. Non-similar solutions for unsteady flow over a yawed cylinder with non-uniform mass transfer through a slot

    Directory of Open Access Journals (Sweden)

    G. Revathi

    2014-12-01

    Full Text Available Non-similar solutions are found numerically to a system of coupled non-linear partial differential equations indicating, unsteady laminar water boundary layer flow over yawed cylinder using implicit finite difference scheme along with Quasi-linearization technique. The fluid properties such as viscosity and Prandtl number are considered as an inverse function of temperature. Unsteadiness is caused by upstream velocity in and directions and non-uniform mass transfer (suction/injection which is applied through slot on the surface of the geometry. The effect of yaw angle, variable fluid properties and non-uniform mass transfer on skin friction and heat transfer coefficients is analyzed. It is found that non-uniform slot suction and downstream movement of the slot cause the point of vanishing skin friction moves downstream, but non-uniform slot injection produces the opposite result of that corresponding to the suction case. When the yaw angle increases, both the skin friction coefficient in the – direction and the heat transfer coefficient decrease but the skin friction coefficient in the – direction increases for all times. The effect of the yaw angle is very little on the point of vanishing skin friction.

  5. Using Nonuniform Fiber to Generate Slow Light via SBS

    Directory of Open Access Journals (Sweden)

    Wenhai Li

    2008-01-01

    Full Text Available The data pulse delay based on slow light induced by stimulated Brillouin scattering (SBS in a nonuniform dispersion decreasing fiber (DDF is demonstrated experimentally, and the distortions of data pulses at different beat frequencies are studied. We found that a delay exceeding a pulse width can be achieved at particular beat frequency, and the DDF has larger delay versus gain slope coefficient with much better output pulse quality than single-mode fiber.

  6. Determination of the axial thermal neutron flux non-uniform factor in the MNSR inner irradiation capsule

    International Nuclear Information System (INIS)

    Khattab, K.; Ghazi, N.; Omar, H.

    2007-01-01

    A 3-D neutronic model, using the WIMSD4 and CITATION codes, for the Syrian Miniature Neutron source Reactor (MNSR) is used to calculate the axial thermal neutron flux non-uniform factor in the inner irradiation capsule. The calculated result is 4%. A copper wire is used to measure the axial thermal neutron flux non-uniform factor in the inner irradiation capsule to be compared with the calculated result. The measured result is 5%. Good agreement between the measured and calculated results is obtained. (author)

  7. Determination of the axial thermal neutron flux non-uniform factor in the MNSR inner irradiation capsule

    International Nuclear Information System (INIS)

    Khattab, K.; Ghazi, N.; Omar, H.

    2007-01-01

    A 3-D neutronic model, using the WIMSD4 and CITATION codes, for the Syrian Miniature Neutron Source Reactor (MNSR) is used to calculate the axial thermal neutron flux non-uniform factor in the inner irradiation capsule. The calculated result is 4%. A copper wire is used to measure the axial thermal neutron flux non-uniform factor in the inner irradiation capsule to be compared with the calculated result. The measured result is 5%. Good agreement between the measured and calculated results is obtained

  8. Dry-plasma-free chemical etch technique for variability reduction in multi-patterning (Conference Presentation)

    Science.gov (United States)

    Kal, Subhadeep; Mohanty, Nihar; Farrell, Richard A.; Franke, Elliott; Raley, Angelique; Thibaut, Sophie; Pereira, Cheryl; Pillai, Karthik; Ko, Akiteru; Mosden, Aelan; Biolsi, Peter

    2017-04-01

    Scaling beyond the 7nm technology node demands significant control over the variability down to a few angstroms, in order to achieve reasonable yield. For example, to meet the current scaling targets it is highly desirable to achieve sub 30nm pitch line/space features at back-end of the line (BEOL) or front end of line (FEOL); uniform and precise contact/hole patterning at middle of line (MOL). One of the quintessential requirements for such precise and possibly self-aligned patterning strategies is superior etch selectivity between the target films while other masks/films are exposed. The need to achieve high etch selectivity becomes more evident for unit process development at MOL and BEOL, as a result of low density films choices (compared to FEOL film choices) due to lower temperature budget. Low etch selectivity with conventional plasma and wet chemical etch techniques, causes significant gouging (un-intended etching of etch stop layer, as shown in Fig 1), high line edge roughness (LER)/line width roughness (LWR), non-uniformity, etc. In certain circumstances this may lead to added downstream process stochastics. Furthermore, conventional plasma etches may also have the added disadvantage of plasma VUV damage and corner rounding (Fig. 1). Finally, the above mentioned factors can potentially compromise edge placement error (EPE) and/or yield. Therefore a process flow enabled with extremely high selective etches inherent to film properties and/or etch chemistries is a significant advantage. To improve this etch selectivity for certain etch steps during a process flow, we have to implement alternate highly selective, plasma free techniques in conjunction with conventional plasma etches (Fig 2.). In this article, we will present our plasma free, chemical gas phase etch technique using chemistries that have high selectivity towards a spectrum of films owing to the reaction mechanism ( as shown Fig 1). Gas phase etches also help eliminate plasma damage to the

  9. Collective motion of active Brownian particles with polar alignment.

    Science.gov (United States)

    Martín-Gómez, Aitor; Levis, Demian; Díaz-Guilera, Albert; Pagonabarraga, Ignacio

    2018-04-04

    We present a comprehensive computational study of the collective behavior emerging from the competition between self-propulsion, excluded volume interactions and velocity-alignment in a two-dimensional model of active particles. We consider an extension of the active brownian particles model where the self-propulsion direction of the particles aligns with the one of their neighbors. We analyze the onset of collective motion (flocking) in a low-density regime (10% surface area) and show that it is mainly controlled by the strength of velocity-alignment interactions: the competition between self-propulsion and crowding effects plays a minor role in the emergence of flocking. However, above the flocking threshold, the system presents a richer pattern formation scenario than analogous models without alignment interactions (active brownian particles) or excluded volume effects (Vicsek-like models). Depending on the parameter regime, the structure of the system is characterized by either a broad distribution of finite-sized polar clusters or the presence of an amorphous, highly fluctuating, large-scale traveling structure which can take a lane-like or band-like form (and usually a hybrid structure which is halfway in between both). We establish a phase diagram that summarizes collective behavior of polar active brownian particles and propose a generic mechanism to describe the complexity of the large-scale structures observed in systems of repulsive self-propelled particles.

  10. Surface-conduction electron-emitter characteristics and fabrication based on vertically aligned carbon nanotube arrays

    Energy Technology Data Exchange (ETDEWEB)

    Shih, Yi-Ting [Graduate Institute of Electro-Optical Engineering, National Taiwan University of Science and Technology, No. 43, Section 4, Keelung Road, Taipei 10607, Taiwan (China); Li, Kuan-Wei [Department of Electronic and Computer Engineering, National Taiwan University of Science and Technology, No. 43, Section 4, Keelung Road, Taipei 10607, Taiwan (China); Honda, Shin-ichi [Graduate School of Engineering, University of Hyogo, 2167 Shosha, Himeji, Hyogo 671-2280 (Japan); Lin, Pao-Hung; Huang, Ying-Sheng [Graduate Institute of Electro-Optical Engineering, National Taiwan University of Science and Technology, No. 43, Section 4, Keelung Road, Taipei 10607, Taiwan (China); Department of Electronic and Computer Engineering, National Taiwan University of Science and Technology, No. 43, Section 4, Keelung Road, Taipei 10607, Taiwan (China); Lee, Kuei-Yi, E-mail: kylee@mail.ntust.edu.tw [Graduate Institute of Electro-Optical Engineering, National Taiwan University of Science and Technology, No. 43, Section 4, Keelung Road, Taipei 10607, Taiwan (China); Department of Electronic and Computer Engineering, National Taiwan University of Science and Technology, No. 43, Section 4, Keelung Road, Taipei 10607, Taiwan (China)

    2017-06-01

    Graphical abstract: The pattern design provides a new structure of surface-conduction electron-emitter display (SED). Delta-star shaped vertically aligned CNT (VACNT) arrays with 20o tips can simultaneously provide three emitters to bombard the sides of equilateral triangles pattern of VACNT, which produces numerous secondary electrons and enhance the SED efficiency. - Highlights: • The carbon nanotube (CNT) has replaced palladium oxide (PdO) as the electrode material for surface-conduction electron-emitter (SCE) applications. • The vertically aligned CNT (VACNT) arrays with 20° tips of the delta-star arrangement are used as cathodes that easily emit electrons. The cathode pattern simultaneously provides three emitters to bombard the sides of equilateral triangles pattern of VACNT. • The VACNT arrays were covered with magnesium oxide (MgO) nanostructures to promote the surface-conduction electron-emitter display (SED) efficiency (η). • The η was stably maintained in the 75–85% range. The proposed design provides a facile new method for developing SED applications. - Abstract: The carbon nanotube (CNT) has replaced palladium oxide (PdO) as the electrode material for surface-conduction electron-emitter (SCE) applications. Vertically aligned CNT arrays with a delta-star arrangement were patterned and synthesized onto a quartz substrate using photolithography and thermal chemical vapor deposition. Delta-star shaped VACNT arrays with 20° tips are used as cathodes that easily emit electrons because of their high electrical field gradient. In order to improve the field emission and secondary electrons (SEs) in SCE applications, magnesium oxide (MgO) nanostructures were coated onto the VACNT arrays to promote the surface-conduction electron-emitter display (SED) efficiency (η). According to the definition of η in SCE applications, in this study, the η was stably maintained in the 75–85% range. The proposed design provides a facile new method for

  11. On the Time Variation of Dust Extinction and Gas Absorption for Type Ia Supernovae Observed Through Non-uniform Interstellar Medium

    Science.gov (United States)

    Huang, Xiaosheng; Aldering, Gregory; Biederman, Moriah; Herger, Brendan

    2018-01-01

    For Type Ia supernovae (SNe Ia) observed through a non-uniform interstellar medium (ISM) in its host galaxy, we investigate whether the non-uniformity can cause observable time variations in dust extinction and in gas absorption due to the expansion of the SN photosphere with time. We show that, owing to the steep spectral index of the ISM density power spectrum, sizable density fluctuation amplitudes at the length scale of typical ISM structures (>~ 10 pc) will translate to much smaller fluctuations on the scales of a SN photosphere. Therefore the typical amplitude of time variation due to non-uniform ISM, of absorption equivalent widths and of extinction, would be small. As a result, we conclude that non-uniform ISM density should not impact cosmology measurements based on SNe Ia. We apply our predictions based on the ISM density power law power spectrum to the observations of two highly reddened SNe Ia, SN 2012cu and SN 2014J.

  12. On the Time Variation of Dust Extinction and Gas Absorption for Type Ia Supernovae Observed through a Nonuniform Interstellar Medium

    Science.gov (United States)

    Huang, X.; Aldering, G.; Biederman, M.; Herger, B.

    2017-11-01

    For Type Ia supernovae (SNe Ia) observed through a nonuniform interstellar medium (ISM) in its host galaxy, we investigate whether the nonuniformity can cause observable time variations in dust extinction and in gas absorption due to the expansion of the SN photosphere with time. We show that, owing to the steep spectral index of the ISM density power spectrum, sizable density fluctuation amplitudes at the length scale of typical ISM structures (≳ 10 {pc}) will translate to much smaller fluctuations on the scales of an SN photosphere. Therefore, the typical amplitude of time variation due to a nonuniform ISM, of absorption equivalent widths, and of extinction, would be small. As a result, we conclude that nonuniform ISM density should not impact cosmology measurements based on SNe Ia. We apply our predictions based on the ISM density power-law power spectrum to the observations of two highly reddened SNe Ia, SN 2012cu and SN 2014J.

  13. CodonLogo: a sequence logo-based viewer for codon patterns.

    Science.gov (United States)

    Sharma, Virag; Murphy, David P; Provan, Gregory; Baranov, Pavel V

    2012-07-15

    Conserved patterns across a multiple sequence alignment can be visualized by generating sequence logos. Sequence logos show each column in the alignment as stacks of symbol(s) where the height of a stack is proportional to its informational content, whereas the height of each symbol within the stack is proportional to its frequency in the column. Sequence logos use symbols of either nucleotide or amino acid alphabets. However, certain regulatory signals in messenger RNA (mRNA) act as combinations of codons. Yet no tool is available for visualization of conserved codon patterns. We present the first application which allows visualization of conserved regions in a multiple sequence alignment in the context of codons. CodonLogo is based on WebLogo3 and uses the same heuristics but treats codons as inseparable units of a 64-letter alphabet. CodonLogo can discriminate patterns of codon conservation from patterns of nucleotide conservation that appear indistinguishable in standard sequence logos. The CodonLogo source code and its implementation (in a local version of the Galaxy Browser) are available at http://recode.ucc.ie/CodonLogo and through the Galaxy Tool Shed at http://toolshed.g2.bx.psu.edu/.

  14. The influence of printing substrate on macro non-uniformity and line reproduction quality of imprints printed with electrophotographic process

    Directory of Open Access Journals (Sweden)

    Đorđe Vujčić

    2016-12-01

    Full Text Available Print quality is very important for every printing technique. It depends on many different quality attributes. This research included analysis of macro non-uniformities and line reproduction. 16 different paper substrates printed by electrophotographic process were analyzed. They were separated in two groups: coated and uncoated papers. Analysis of macro non-uniformity showed that print mottle has lower values when printed on coated papers than on uncoated papers. Line reproduction analysis showed that the toner spreaded, during melting and fixation, on line edges for both types of paper. According to these results it can be concluded that paper substrate affects the macro non-uniformity and line reproduction, thus overall print quality.

  15. Effective electrodiffusion equation for non-uniform nanochannels.

    Science.gov (United States)

    Marini Bettolo Marconi, Umberto; Melchionna, Simone; Pagonabarraga, Ignacio

    2013-06-28

    We derive a one-dimensional formulation of the Planck-Nernst-Poisson equation to describe the dynamics of a symmetric binary electrolyte in channels whose section is nanometric and varies along the axial direction. The approach is in the spirit of the Fick-Jacobs diffusion equation and leads to a system of coupled equations for the partial densities which depends on the charge sitting at the walls in a non-trivial fashion. We consider two kinds of non-uniformities, those due to the spatial variation of charge distribution and those due to the shape variation of the pore and report one- and three-dimensional solutions of the electrokinetic equations.

  16. Flexible RF filter using a nonuniform SCISSOR.

    Science.gov (United States)

    Zhuang, Leimeng

    2016-03-15

    This work presents a flexible radiofrequency (RF) filter using an integrated microwave photonic circuit that comprises a nonuniform side-coupled integrated spaced sequence of resonators (N-SCISSOR). The filter passband can be reconfigured by varying the N-SCISSOR parameters. When employing a dual-parallel Mach-Zechnder modulator, the filter is also able to perform frequency down-conversion. In the experiment, various filter response shapes are shown, ranging from a flat-top band-pass filter to a total opposite high-rejection (>40  dB) notch filter, with a frequency coverage of greater than two octaves. The frequency down-conversion function is also demonstrated.

  17. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    M. Dallavalle

    2013-01-01

    A new Muon misalignment scenario for 2011 (7 TeV) Monte Carlo re-processing was re-leased. The scenario is based on running of standard track-based reference-target algorithm (exactly as in data) using single-muon simulated sample (with the transverse-momentum spectrum matching data). It used statistics similar to what was used for alignment with 2011 data, starting from an initially misaligned Muon geometry from uncertainties of hardware measurements and using the latest Tracker misalignment geometry. Validation of the scenario (with muons from Z decay and high-pT simulated muons) shows that it describes data well. The study of systematic uncertainties (dominant by now due to huge amount of data collected by CMS and used for muon alignment) is finalised. Realistic alignment position errors are being obtained from the estimated uncertainties and are expected to improve the muon reconstruction performance. Concerning the Hardware Alignment System, the upgrade of the Barrel Alignment is in progress. By now, d...

  18. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    G. Gomez

    2011-01-01

    A new set of muon alignment constants was approved in August. The relative position between muon chambers is essentially unchanged, indicating good detector stability. The main changes concern the global positioning of the barrel and of the endcap rings to match the new Tracker geometry. Detailed studies of the differences between track-based and optical alignment of DTs have proven to be a valuable tool for constraining Tracker alignment weak modes, and this information is now being used as part of the alignment procedure. In addition to the “split-cosmic” analysis used to investigate the muon momentum resolution at high momentum, a new procedure based on reconstructing the invariant mass of di-muons from boosted Zs is under development. Both procedures show an improvement in the momentum precision of Global Muons with respect to Tracker-only Muons. Recent developments in track-based alignment include a better treatment of the tails of residual distributions and accounting for correla...

  19. Multi-resolution Shape Analysis via Non-Euclidean Wavelets: Applications to Mesh Segmentation and Surface Alignment Problems.

    Science.gov (United States)

    Kim, Won Hwa; Chung, Moo K; Singh, Vikas

    2013-01-01

    The analysis of 3-D shape meshes is a fundamental problem in computer vision, graphics, and medical imaging. Frequently, the needs of the application require that our analysis take a multi-resolution view of the shape's local and global topology, and that the solution is consistent across multiple scales. Unfortunately, the preferred mathematical construct which offers this behavior in classical image/signal processing, Wavelets, is no longer applicable in this general setting (data with non-uniform topology). In particular, the traditional definition does not allow writing out an expansion for graphs that do not correspond to the uniformly sampled lattice (e.g., images). In this paper, we adapt recent results in harmonic analysis, to derive Non-Euclidean Wavelets based algorithms for a range of shape analysis problems in vision and medical imaging. We show how descriptors derived from the dual domain representation offer native multi-resolution behavior for characterizing local/global topology around vertices. With only minor modifications, the framework yields a method for extracting interest/key points from shapes, a surprisingly simple algorithm for 3-D shape segmentation (competitive with state of the art), and a method for surface alignment (without landmarks). We give an extensive set of comparison results on a large shape segmentation benchmark and derive a uniqueness theorem for the surface alignment problem.

  20. Human thermal sensation and comfort in a non-uniform environment with personalized heating.

    Science.gov (United States)

    Deng, Qihong; Wang, Runhuai; Li, Yuguo; Miao, Yufeng; Zhao, Jinping

    2017-02-01

    Thermal comfort in traditionally uniform environment is apparent and can be improved by increasing energy expenses. To save energy, non-uniform environment implemented by personalized conditioning system attracts considerable attention, but human response in such environment is unclear. To investigate regional- and whole-body thermal sensation and comfort in a cool environment with personalized heating. In total 36 subjects (17 males and 19 females) including children, adults and the elderly, were involved in our experiment. Each subject was first asked to sit on a seat in an 18°C chamber (uniform environment) for 40min and then sit on a heating seat in a 16°C chamber (non-uniform environment) for another 40min after 10min break. Subjects' regional- and whole-body thermal sensation and comfort were surveyed by questionnaire and their skin temperatures were measured by wireless sensors. We statistically analyzed subjects' thermal sensation and comfort and their skin temperatures in different age and gender groups and compared them between the uniform and non-uniform environments. Overall thermal sensation and comfort votes were respectively neutral and just comfortable in 16°C chamber with personalized heating, which were significantly higher than those in 18°C chamber without heating (pthermal sensation and comfort was consistent in subjects of different age and gender. However, adults and the females were more sensitive to the effect of personalized heating and felt cooler and less comfort than children/elderly and the males respectively. Variations of the regional thermal sensation/comfort across human body were consistent with those of skin temperature. Personalized heating significantly improved human thermal sensation and comfort in non-uniform cooler environment, probably due to the fact that it increased skin temperature. However, the link between thermal sensation/comfort and variations of skin temperature is rather complex and warrant further

  1. Reducing beam shaper alignment complexity: diagnostic techniques for alignment and tuning

    Science.gov (United States)

    Lizotte, Todd E.

    2011-10-01

    Safe and efficient optical alignment is a critical requirement for industrial laser systems used in a high volume manufacturing environment. Of specific interest is the development of techniques to align beam shaping optics within a beam line; having the ability to instantly verify by a qualitative means that each element is in its proper position as the beam shaper module is being aligned. There is a need to reduce these types of alignment techniques down to a level where even a newbie to optical alignment will be able to complete the task. Couple this alignment need with the fact that most laser system manufacturers ship their products worldwide and the introduction of a new set of variables including cultural and language barriers, makes this a top priority for manufacturers. Tools and methodologies for alignment of complex optical systems need to be able to cross these barriers to ensure the highest degree of up time and reduce the cost of maintenance on the production floor. Customers worldwide, who purchase production laser equipment, understand that the majority of costs to a manufacturing facility is spent on system maintenance and is typically the largest single controllable expenditure in a production plant. This desire to reduce costs is driving the trend these days towards predictive and proactive, not reactive maintenance of laser based optical beam delivery systems [10]. With proper diagnostic tools, laser system developers can develop proactive approaches to reduce system down time, safe guard operational performance and reduce premature or catastrophic optics failures. Obviously analytical data will provide quantifiable performance standards which are more precise than qualitative standards, but each have a role in determining overall optical system performance [10]. This paper will discuss the use of film and fluorescent mirror devices as diagnostic tools for beam shaper module alignment off line or in-situ. The paper will also provide an overview

  2. A METHOD FOR EVALUATION OF NON-UNIFORM RADIANT-CONVECTIVE LOAD ON HUMAN BODY DURING MENTAL WORK

    Directory of Open Access Journals (Sweden)

    Lenka Prokšová Zuská

    2017-10-01

    Full Text Available The objective of this study was to develop a documentation for the amendment of the microclimatic part of the Czech Government Regulation, particularly in a non-uniform radiant-convective load evaluation. Changes in regulation were made based on experimental data obtained on a group of experimental individuals in a climatic chamber. One of the objectives of the climatic chamber experiments was to evaluate whether there was a possibility to use an alternative method, which utilizes a new value – stereotemperature, for the assessment. A group of 24 women was exposed to a non-uniform radiant-convective load in a climatic chamber for 1 hour during their computer work. Measurements were divided according to the globe temperature into 3 stages. The physical parameters of air were continuously measured: the air temperature, globe temperature, air velocity, radiant temperature, relative humidity, stereotemperature and physiological parameters. Thermal sensations of experimental subjects were expressed in the seven-point scale according to EN ISO 7730. The thermal sensation correlated very well with the difference of stereotemperature and the globe temperature. The stereotemperature correlated very well with the radiant temperature. In this work, the composed equations were used to develop the limit values for the thermal stress evaluation in the uniform and non-uniform thermal environment at workplaces. It is possible to determine how the body of an exposed person perceives the non-uniform climatic conditions in the indoor environment, by adding the stereotemperature to government regulations.

  3. Tidal alignment of galaxies

    Energy Technology Data Exchange (ETDEWEB)

    Blazek, Jonathan; Vlah, Zvonimir; Seljak, Uroš

    2015-08-01

    We develop an analytic model for galaxy intrinsic alignments (IA) based on the theory of tidal alignment. We calculate all relevant nonlinear corrections at one-loop order, including effects from nonlinear density evolution, galaxy biasing, and source density weighting. Contributions from density weighting are found to be particularly important and lead to bias dependence of the IA amplitude, even on large scales. This effect may be responsible for much of the luminosity dependence in IA observations. The increase in IA amplitude for more highly biased galaxies reflects their locations in regions with large tidal fields. We also consider the impact of smoothing the tidal field on halo scales. We compare the performance of this consistent nonlinear model in describing the observed alignment of luminous red galaxies with the linear model as well as the frequently used "nonlinear alignment model," finding a significant improvement on small and intermediate scales. We also show that the cross-correlation between density and IA (the "GI" term) can be effectively separated into source alignment and source clustering, and we accurately model the observed alignment down to the one-halo regime using the tidal field from the fully nonlinear halo-matter cross correlation. Inside the one-halo regime, the average alignment of galaxies with density tracers no longer follows the tidal alignment prediction, likely reflecting nonlinear processes that must be considered when modeling IA on these scales. Finally, we discuss tidal alignment in the context of cosmic shear measurements.

  4. Fast global sequence alignment technique

    KAUST Repository

    Bonny, Mohamed Talal; Salama, Khaled N.

    2011-01-01

    fast alignment algorithm, called 'Alignment By Scanning' (ABS), to provide an approximate alignment of two DNA sequences. We compare our algorithm with the wellknown sequence alignment algorithms, the 'GAP' (which is heuristic) and the 'Needleman

  5. Growth of high-aspect ratio horizontally-aligned ZnO nanowire arrays.

    Science.gov (United States)

    Soman, Pranav; Darnell, Max; Feldman, Marc D; Chen, Shaochen

    2011-08-01

    A method of fabricating horizontally-aligned zinc-oxide (ZnO) nanowire (NW) arrays with full control over the width and length is demonstrated. SEM images reveal the hexagonal structure typical of zinc oxide NWs. Arrays of high-aspect ratio horizontal ZnO NWs are fabricated by making use of the lateral overgrowth from dot patterns created by electron beam lithography (EBL). An array of patterned wires are lifted off and transferred to a flexible PDMS substrate with possible applications in several key nanotechnology areas.

  6. Smoothing and instability with magnetic field in a non-uniformly laser-irradiated planar target

    International Nuclear Information System (INIS)

    Bell, A.R.; Epperlein, E.M.

    1986-01-01

    Calculations are presented of the magneto-hydrodynamic response of a planar target to non-uniformities in energy deposition by a laser. The amplitude of the non-uniformities are assumed small and the equations are linearised in small perturbations about the solution for steady planar ablation driven by uniform laser energy deposition. The grad(n)xgrad(T) magnetic field source is included, along with Nernst convection and the Righi-Leduc heat flow. The magnetic field is shown to give a small increase in smoothing. A source term for magnetic field is included to simulate the effects of the Weibel instability. The instability is not strong enough to overcome the smoothing processes under the present assumptions. (author)

  7. Effects of non-uniform embedments on earthquake responses of nuclear reactor building

    International Nuclear Information System (INIS)

    Koyanagi, Y.; Okamoto, S.; Yoshida, K.; Inove, H.

    1989-01-01

    The nuclear reactor buildings have the portion embedded in soil. In the seismic design of such structures, it is essential to consider the effects of the embedment on the earthquake response. Most studies on these effects, however, assume the uniform embedment, i.e. the depth of the embedment is constant, which is convenient for the design and analysis. The behavior of the earthquake response considering the three-dimensional aspects of non-uniform embedment has not been made clear yet. In this paper, the authors evaluate the effects of the non-uniform embedment in an inclined ground surface on the earthquake response of a nuclear reactor building as illustrated. A typical PWR type reactor building is chosen as an analysis structure model. Four different types of embedment are set up for the comparison study. The three-dimensional analysis is carried out considering the geometry of embedment

  8. Nonuniform Overlapping Method in Designing Microstrip Patch Antennas Using Genetic Algorithm Optimization

    Directory of Open Access Journals (Sweden)

    J. M. Jeevani W. Jayasinghe

    2015-01-01

    Full Text Available Genetic algorithm (GA has been a popular optimization technique used for performance improvement of microstrip patch antennas (MPAs. When using GA, the patch geometry is optimized by dividing the patch area into small rectangular cells. This has an inherent problem of adjacent cells being connected to each other with infinitesimal connections, which may not be achievable in practice due to fabrication tolerances in chemical etching. As a solution, this paper presents a novel method of dividing the patch area into cells with nonuniform overlaps. The optimized design, which is obtained by using fixed overlap sizes, shows a quad-band performance covering GSM1800, GSM1900, LTE2300, and Bluetooth bands. In contrast, use of nonuniform overlap sizes leads to obtaining a pentaband design covering GSM1800, GSM1900, UMTS, LTE2300, and Bluetooth bandswith fractional bands with of 38% due to the extra design flexibility.

  9. Mechanical analysis of non-uniform bi-directional functionally graded intelligent micro-beams using modified couple stress theory

    Science.gov (United States)

    Bakhshi Khaniki, Hossein; Rajasekaran, Sundaramoorthy

    2018-05-01

    This study develops a comprehensive investigation on mechanical behavior of non-uniform bi-directional functionally graded beam sensors in the framework of modified couple stress theory. Material variation is modelled through both length and thickness directions using power-law, sigmoid and exponential functions. Moreover, beam is assumed with linear, exponential and parabolic cross-section variation through the length using power-law and sigmoid varying functions. Using these assumptions, a general model for microbeams is presented and formulated by employing Hamilton’s principle. Governing equations are solved using a mixed finite element method with Lagrangian interpolation technique, Gaussian quadrature method and Wilson’s Lagrangian multiplier method. It is shown that by using bi-directional functionally graded materials in nonuniform microbeams, mechanical behavior of such structures could be affected noticeably and scale parameter has a significant effect in changing the rigidity of nonuniform bi-directional functionally graded beams.

  10. Selective exfoliation of single-layer graphene from non-uniform graphene grown on Cu

    International Nuclear Information System (INIS)

    Lim, Jae-Young; Lee, Jae-Hyun; Jang, Hyeon-Sik; Whang, Dongmok; Joo, Won-Jae; Hwang, SungWoo

    2015-01-01

    Graphene growth on a copper surface via metal-catalyzed chemical vapor deposition has several advantages in terms of providing high-quality graphene with the potential for scale-up, but the product is usually inhomogeneous due to the inability to control the graphene layer growth. The non-uniform regions strongly affect the reliability of the graphene in practical electronic applications. Herein, we report a novel graphene transfer method that allows for the selective exfoliation of single-layer graphene from non-uniform graphene grown on a Cu foil. Differences in the interlayer bonding energy are exploited to mechanically separate only the top single-layer graphene and transfer this to an arbitrary substrate. The dry-transferred single-layer graphene showed electrical characteristics that were more uniform than those of graphene transferred using conventional wet-etching transfer steps. (paper)

  11. Fabrication of Vertically Aligned Carbon Nanotube or Zinc Oxide Nanorod Arrays for Optical Diffraction Gratings.

    Science.gov (United States)

    Kim, Jeong; Kim, Sun Il; Cho, Seong-Ho; Hwang, Sungwoo; Lee, Young Hee; Hur, Jaehyun

    2015-11-01

    We report on new fabrication methods for a transparent, hierarchical, and patterned electrode comprised of either carbon nanotubes or zinc oxide nanorods. Vertically aligned carbon nanotubes or zinc oxide nanorod arrays were fabricated by either chemical vapor deposition or hydrothermal growth, in combination with photolithography. A transparent conductive graphene layer or zinc oxide seed layer was employed as the transparent electrode. On the patterned surface defined using photoresist, the vertically grown carbon nanotubes or zinc oxides could produce a concentrated electric field under applied DC voltage. This periodic electric field was used to align liquid crystal molecules in localized areas within the optical cell, effectively modulating the refractive index. Depending on the material and morphology of these patterned electrodes, the diffraction efficiency presented different behavior. From this study, we established the relationship between the hierarchical structure of the different electrodes and their efficiency for modulating the refractive index. We believe that this study will pave a new path for future optoelectronic applications.

  12. Effects of warmness and spatial nonuniformity of plasma waveguide on periodic absolute parametric instability

    International Nuclear Information System (INIS)

    Zaki, N.G.; Bekheit, A.H.

    2011-01-01

    The periodic absolute parametric instability (API) of the low-frequency oscillations excited by a monochromatic pumping field of an arbitrary amplitude in a warm 1-D (one-dimensional) nonuniform magnetoactive plasma is investigated. The separation method can be used for solving the two-fluid plasma equations describing the system. By applying this method we were able to determine the frequencies and growth rates of unstable modes and the self-consistent electric field. Plasma electrons are considered to have a thermal velocity. Different solutions for the spatial equation can be obtained the following cases: A) API in a uniform plasma, B) API in a nonuniform plasma. The latter has been studied here for two cases: B.1) the exact harmonic oscillator and B.2) the bounded harmonic oscillator (a bounded plasma). An increment has been found in the build-up of the oscillations, and it has been shown that the spatial nonuniformity of the plasma exerts the stabilizing effect on the parametric instability. A reduced growth rate of API in the warm plasma, in comparison to the cold plasma, is reported. It has also been found that the warmness of the plasma has no effect on the solution of the space part of the problem (only through the separation constant). (authors)

  13. Alignment of Healthy Dietary Patterns and Environmental Sustainability: A Systematic Review.

    Science.gov (United States)

    Nelson, Miriam E; Hamm, Michael W; Hu, Frank B; Abrams, Steven A; Griffin, Timothy S

    2016-11-01

    To support food security for current and future generations, there is a need to understand the relation between sustainable diets and the health of a population. In recent years, a number of studies have investigated and compared different dietary patterns to better understand which foods and eating patterns have less of an environmental impact while meeting nutritional needs and promoting health. This systematic review (SR) of population-level dietary patterns and food sustainability extends and updates the SR that was conducted by the 2015 US Dietary Guidelines Advisory Committee, an expert committee commissioned by the federal government to inform dietary guidance as it relates to the committee's original conclusions. In the original SR, 15 studies met the criteria for inclusion; since then, an additional 8 studies have been identified and included. The relations between dietary intake patterns and both health and environmental outcomes were compared across studies, with methodologies that included modeling, life cycle assessment, and land use analysis. Across studies, consistent evidence indicated that a dietary pattern higher in plant-based foods (e.g., vegetables, fruits, legumes, seeds, nuts, whole grains) and lower in animal-based foods (especially red meat), as well as lower in total energy, is both healthier and associated with a lesser impact on the environment. This dietary pattern differs from current average consumption patterns in the United States. Our updated SR confirms and strengthens the conclusions of the original US Dietary Guidelines Advisory Committee SR, which found that adherence to several well-characterized dietary patterns, including vegetarian (with variations) diets, dietary guidelines-related diets, Mediterranean-style diets, the Dietary Approaches to Stop Hypertension (DASH) diet, and other sustainable diet scenarios, promotes greater health and has a less negative impact on the environment than current average dietary intakes.

  14. Sidewall patterning - A new wafer-scale method for accurate patterning of vertical silicon structures

    NARCIS (Netherlands)

    Westerik, P. J.; Vijselaar, W. J.C.; Berenschot, J. W.; Tas, N. R.; Huskens, J.; Gardeniers, J. G.E.

    2018-01-01

    For the definition of wafer scale micro- and nanostructures, in-plane geometry is usually controlled by optical lithography. However, options for precisely patterning structures in the out-of-plane direction are much more limited. In this paper we present a versatile self-aligned technique that

  15. Convection and field-aligned currents, related to polar cap arcs, during strongly northward IMF (11 January 1983)

    International Nuclear Information System (INIS)

    Israelevich, P.L.; Podgorny, I.M.; Kuzmin, A.K.; Nikolaeva, N.S.; Dubinin, E.M.

    1988-01-01

    Electric and magnetic fields and auroral emissions have been measured by the Intercosmos-Bulgaria-1300 satellite on 10-11 January 1983. The measured distributions of the plasma drift velocity show that viscous convection is diminished in the evening sector under IMF B y y > 0. A number of sun-aligned polar cap arcs were observed at the beginning of the period of strongly northward IMF and after a few hours a θ-aurora appeared. The intensity of ionized oxygen emission increased significantly reaching up to several kilo-Rayleighs in the polar cap arc. A complicated pattern of convection and field-aligned currents existed in the nightside polar cap which differed from the four-cell model of convection and NBZ field-aligned current system. This pattern was observed during 12 h and could be interpreted as six large scale field-aligned current sheets and three convective vortices inside the polar cap. Sun-aligned polar cap arcs may be located in regions both of sunward and anti-sunward convection. Structures of smaller spatial scale-correspond to the boundaries of hot plasma regions related to polar cap arcs. Obviously these structures are due to S-shaped distributions of electric potential. Parallel electric fields in these S-structures provide electron acceleration up to 1 keV at the boundaries of polar cap arcs. The pairs of field-aligned currents correspond to those S-structures: a downward current at the external side of the boundary and an upward current at the internal side of it. (author)

  16. Modelling non-uniform strain distributions in aerospace composites using fibre Bragg gratings

    NARCIS (Netherlands)

    Rajabzadehdizaji, Aydin; Groves, R.M.; Hendriks, R.C.; Heusdens, R.; Chung, Y.; Jin, W.; Lee, B.; Canning, J.; Nakamura, K.; Yuan, L.

    2017-01-01

    In this paper the behaviour of fibre Bragg grating (FBG) sensors under non-uniform strain distributions was analysed. Using the fundamental matrix approach, the length of the FBG sensor was discretised, with each segment undergoing different strain values. FBG sensors that are embedded inside

  17. Ancestral sequence alignment under optimal conditions

    Directory of Open Access Journals (Sweden)

    Brown Daniel G

    2005-11-01

    Full Text Available Abstract Background Multiple genome alignment is an important problem in bioinformatics. An important subproblem used by many multiple alignment approaches is that of aligning two multiple alignments. Many popular alignment algorithms for DNA use the sum-of-pairs heuristic, where the score of a multiple alignment is the sum of its induced pairwise alignment scores. However, the biological meaning of the sum-of-pairs of pairs heuristic is not obvious. Additionally, many algorithms based on the sum-of-pairs heuristic are complicated and slow, compared to pairwise alignment algorithms. An alternative approach to aligning alignments is to first infer ancestral sequences for each alignment, and then align the two ancestral sequences. In addition to being fast, this method has a clear biological basis that takes into account the evolution implied by an underlying phylogenetic tree. In this study we explore the accuracy of aligning alignments by ancestral sequence alignment. We examine the use of both maximum likelihood and parsimony to infer ancestral sequences. Additionally, we investigate the effect on accuracy of allowing ambiguity in our ancestral sequences. Results We use synthetic sequence data that we generate by simulating evolution on a phylogenetic tree. We use two different types of phylogenetic trees: trees with a period of rapid growth followed by a period of slow growth, and trees with a period of slow growth followed by a period of rapid growth. We examine the alignment accuracy of four ancestral sequence reconstruction and alignment methods: parsimony, maximum likelihood, ambiguous parsimony, and ambiguous maximum likelihood. Additionally, we compare against the alignment accuracy of two sum-of-pairs algorithms: ClustalW and the heuristic of Ma, Zhang, and Wang. Conclusion We find that allowing ambiguity in ancestral sequences does not lead to better multiple alignments. Regardless of whether we use parsimony or maximum likelihood, the

  18. Quadra-quantum Dots and Related Patterns of Quantum Dot Molecules:

    Directory of Open Access Journals (Sweden)

    Somsak Panyakeow

    2010-10-01

    Full Text Available Abstract Laterally close-packed quantum dots (QDs called quantum dot molecules (QDMs are grown by modified molecular beam epitaxy (MBE. Quantum dots could be aligned and cross hatched. Quantum rings (QRs created from quantum dot transformation during thin or partial capping are used as templates for the formations of bi-quantum dot molecules (Bi-QDMs and quantum dot rings (QDRs. Preferable quantum dot nanostructure for quantum computation based on quantum dot cellular automata (QCA is laterally close-packed quantum dot molecules having four quantum dots at the corners of square configuration. These four quantum dot sets are called quadra-quantum dots (QQDs. Aligned quadra-quantum dots with two electron confinements work like a wire for digital information transmission by Coulomb repulsion force, which is fast and consumes little power. Combination of quadra-quantum dots in line and their cross-over works as logic gates and memory bits. Molecular Beam Epitaxial growth technique called ‘‘Droplet Epitaxy” has been developed for several quantum nanostructures such as quantum rings and quantum dot rings. Quantum rings are prepared by using 20 ML In-Ga (15:85 droplets deposited on a GaAs substrate at 390°C with a droplet growth rate of 1ML/s. Arsenic flux (7–8×10-6Torr is then exposed for InGaAs crystallization at 200°C for 5 min. During droplet epitaxy at a high droplet thickness and high temperature, out-diffusion from the centre of droplets occurs under anisotropic strain. This leads to quantum ring structures having non-uniform ring stripes and deep square-shaped nanoholes. Using these peculiar quantum rings as templates, four quantum dots situated at the corners of a square shape are regrown. Two of these four quantum dots are aligned either or , which are preferable crystallographic directions of quantum dot alignment in general.

  19. Effects of Warmness and Spatial Nonuniformity of the Plasma Waveguide on Periodic Absolute Parametric Instability

    International Nuclear Information System (INIS)

    Zaki, N.G.; Bekheit, A.H.

    2011-01-01

    The periodic absolute parametric instability (API) of the low-frequency oscillations excited by a monochromatic pumping field of arbitrary amplitude in a warm I-D nonuniform magneto active plasma is investigated. One can use the separation method to solve the two-fluid plasma equations which describe the system. The method used enables us to determine the frequencies and growth rates of unstable modes and the self-consistent electric field. Plasma electrons are considered to have a thermal velocity. One can examine different solutions for the spatial equation in the following cases: A) API in uniform Plasma B) API in nonuniform plasma, we study this case for two variants: B.1) Exact harmonic oscillator and B.2) Bounded harmonic oscillator (bounded plasma). Increment is found in the buildup of the oscillations, and it is shown that the spatial nonuniformity of the plasma exerts a stabilizing effect on the parametric instability. It is shown that the growth rate of API in warm plasma is reduced compared to cold plasma. It is found also that the warmness of the plasma has no effect on the solution of the space part of the problem ( only through the separation constant )

  20. Design of Chebychev’s Low Pass Filters Using Nonuniform Transmission Lines

    Directory of Open Access Journals (Sweden)

    Said Attamimi

    2016-03-01

    Full Text Available Transmission lines are utilized in many applications to convey energy as well as information. Nonuniform transmission lines (NTLs are obtained through variation of the characteristic quantities along the axial direction. Such NTLs can be used to design network elements, like matching circuits, delay equalizers, filters, VLSI interconnections, etc. In this work, NTLs were analyzed with a numerical method based on the implementation of method of moment. In order to approximate the voltage and current distribution along the transmission line, a sum of basis functions with unknown amplitudes was introduced. As basis function, a constant function was used. In this work, we observed several cases such as lossless and lossy uniform transmission lines with matching and arbitrary load. These cases verified the algorithm developed in this work. The second example consists of nonuniform transmission lines in the form of abruptly changing transmission lines. This structure was used to design a Chebychev’s low pass filter. The calculated reflection and transmission factors of the filters showed some coincidences with the measurements.

  1. Gravitational Influences on Flame Propagation through Non-Uniform, Premixed Gas Systems

    Science.gov (United States)

    Miller, Fletcher J.; Easton, John; Ross, Howard D.; Marchese, Anthony; Perry, David; Kulis, Michael

    2001-01-01

    Flame propagation through non-uniformly premixed (or layered) gases has importance both in useful combustion systems and in unintentional fires. As summarized previously, non-uniform premixed gas combustion receives scant attention compared to the more usual limiting cases of diffusion or uniformly premixed flames, especially regarding the role gravity plays. This paper summarizes our progress on furthering the knowledge of layered combustion, in which a fuel concentration gradient exists normal to the direction of flame spread. We present experimental and numerical results for flame spread through propanol-air layers formed near the flash point temperature (25 C) or near the stoichiometric temperature (33 C). Both the model and experimental results show that the removal of gravity results in a faster spreading flame, by as much as 80% depending on conditions. This is exactly the opposite effect as that predicted by an earlier model reported. We also found that having a gallery lid results in faster flame spread, an effect more pronounced at normal gravity, demonstrating the importance of enclosure geometry. Also reported here is the beginning of our spectroscopic measurements of fuel vapor.

  2. Computational design of patterned interfaces using reduced order models

    International Nuclear Information System (INIS)

    Vattre, A.J.; Abdolrahim, N.; Kolluri, K.; Demkowicz, M.J.

    2014-01-01

    Patterning is a familiar approach for imparting novel functionalities to free surfaces. We extend the patterning paradigm to interfaces between crystalline solids. Many interfaces have non-uniform internal structures comprised of misfit dislocations, which in turn govern interface properties. We develop and validate a computational strategy for designing interfaces with controlled misfit dislocation patterns by tailoring interface crystallography and composition. Our approach relies on a novel method for predicting the internal structure of interfaces: rather than obtaining it from resource-intensive atomistic simulations, we compute it using an efficient reduced order model based on anisotropic elasticity theory. Moreover, our strategy incorporates interface synthesis as a constraint on the design process. As an illustration, we apply our approach to the design of interfaces with rapid, 1-D point defect diffusion. Patterned interfaces may be integrated into the microstructure of composite materials, markedly improving performance. (authors)

  3. Clear aligners in orthodontic treatment.

    Science.gov (United States)

    Weir, T

    2017-03-01

    Since the introduction of the Tooth Positioner (TP Orthodontics) in 1944, removable appliances analogous to clear aligners have been employed for mild to moderate orthodontic tooth movements. Clear aligner therapy has been a part of orthodontic practice for decades, but has, particularly since the introduction of Invisalign appliances (Align Technology) in 1998, become an increasingly common addition to the orthodontic armamentarium. An internet search reveals at least 27 different clear aligner products currently on offer for orthodontic treatment. The present paper will highlight the increasing popularity of clear aligner appliances, as well as the clinical scope and the limitations of aligner therapy in general. Further, the paper will outline the differences between the various types of clear aligner products currently available. © 2017 Australian Dental Association.

  4. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    Gervasio Gomez

    2012-01-01

      The new alignment for the DT chambers has been successfully used in physics analysis starting with the 52X Global Tag. The remaining main areas of development over the next few months will be preparing a new track-based CSC alignment and producing realistic APEs (alignment position errors) and MC misalignment scenarios to match the latest muon alignment constants. Work on these items has been delayed from the intended timeline, mostly due to a large involvement of the muon alignment man-power in physics analyses over the first half of this year. As CMS keeps probing higher and higher energies, special attention must be paid to the reconstruction of very-high-energy muons. Recent muon POG reports from mid-June show a φ-dependence in curvature bias in Monte Carlo samples. This bias is observed already at the tracker level, where it is constant with muon pT, while it grows with pT as muon chamber information is added to the tracks. Similar studies show a much smaller effect in data, at le...

  5. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    G. Gomez

    2010-01-01

    For the last three months, the Muon Alignment group has focussed on providing a new, improved set of alignment constants for the end-of-year data reprocessing. These constants were delivered on time and approved by the CMS physics validation team on November 17. The new alignment incorporates several improvements over the previous one from March for nearly all sub-systems. Motivated by the loss of information from a hardware failure in May (an entire MAB was lost), the optical barrel alignment has moved from a modular, super-plane reconstruction, to a full, single loop calculation of the entire geometry for all DTs in stations 1, 2 and 3. This makes better use of the system redundancy, mitigating the effect of the information loss. Station 4 is factorised and added afterwards to make the system smaller (and therefore faster to run), and also because the MAB calibration at the MB4 zone is less precise. This new alignment procedure was tested at 0 T against photogrammetry resulting in precisions of the order...

  6. The Superconvergence Phenomenon and Proof of the MAC Scheme for the Stokes Equations on Non-uniform Rectangular Meshes

    KAUST Repository

    Li, Jichun

    2014-12-02

    For decades, the widely used finite difference method on staggered grids, also known as the marker and cell (MAC) method, has been one of the simplest and most effective numerical schemes for solving the Stokes equations and Navier–Stokes equations. Its superconvergence on uniform meshes has been observed by Nicolaides (SIAM J Numer Anal 29(6):1579–1591, 1992), but the rigorous proof is never given. Its behavior on non-uniform grids is not well studied, since most publications only consider uniform grids. In this work, we develop the MAC scheme on non-uniform rectangular meshes, and for the first time we theoretically prove that the superconvergence phenomenon (i.e., second order convergence in the (Formula presented.) norm for both velocity and pressure) holds true for the MAC method on non-uniform rectangular meshes. With a careful and accurate analysis of various sources of errors, we observe that even though the local truncation errors are only first order in terms of mesh size, the global errors after summation are second order due to the amazing cancellation of local errors. This observation leads to the elegant superconvergence analysis even with non-uniform meshes. Numerical results are given to verify our theoretical analysis.

  7. Induced charge of spherical dust particle on plasma-facing wall in non-uniform electric field

    International Nuclear Information System (INIS)

    Tomita, Y.; Smirnov, R.; Zhu, S.

    2005-01-01

    Induced charge of a spherical dust particle on a plasma-facing wall is investigated analytically, where non-uniform electric field is applied externally. The one-dimensional non-uniform electrostatic potential is approximated by the polynomial of the normal coordinate toward the wall. The bipolar coordinate is introduced to solve the Laplace equation of the induced electrostatic potential. The boundary condition at the dust surface determines the unknown coefficients of the general solution of the Laplace equation for the induced potential. From the obtained potential the surface induced charge can be calculated. This result allows estimating the effect of the surrounding plasma, which shields the induced charge. (author)

  8. Evaluation of the dose uniformity for double-plane high dose rate interstitial breast implants with the use of dose reference points and dose non-uniformity ratio

    International Nuclear Information System (INIS)

    MAjor, T.; Polgar, C.; Somogyi, A.; Nemeth, G.

    2000-01-01

    This study investigated the influence of dwell time optimizations on dose uniformity characterized by dose values in dose points and dose non-uniformity ratio (DNR) and analyzed which implant parameters have influence on the DNR. Double-plane breast implants with catheters arranged in triangular pattern were used for the calculations. At a typical breast implant, dose values in dose reference points inside the target volume and volumes enclosed by given isodose surfaces were calculated and compared for non-optimized and optimized implants. The same 6-cm treatment length was used for the comparisons. Using different optimizations plots of dose non-uniformity ratio as a function of catheter separation, source step size, number of catheters, length of active sections were drawn and the minimum DNR values were determined. Optimization resulted in less variation in dose values over dose points through the whole volume and in the central plane only compared to the non-optimized case. At implant configurations consisting of seven catheters with 15-mm separation, 5-mm source step size and various active lengths adapted according to the type of optimization, the no optimization, geometrical (volume mode) and dose point (on dose points and geometry) optimization resulted in similar treatment volumes, but an increased high dose volume was observed due to the optimization. The dose non-uniformity ratio always had the minimum at average dose over dose normalization points, defined in the midpoints between the catheters through the implant volume. The minimum value of DNR depended on catheter separation, source step size, active length and number of catheters. The optimization had only a small influence on DNR. In addition to the reference points in the central plane only, dose points positioned in the whole implant volume can be used for evaluating the dose uniformity of interstitial implants. The dose optimization increases not only the dose uniformity within the implant but

  9. Numerical research on natural convection in molten salt reactor with non-uniformly distributed volumetric heat generation

    International Nuclear Information System (INIS)

    Qian Libo; Qiu Suizheng; Zhang Dalin; Su Guanghui; Tian Wenxi

    2010-01-01

    Molten salt reactor is one of the six Generation IV systems capable of breeding and transmutation of actinides and long-lived fission products, which uses the liquid molten salt as the fuel solvent, coolant and heat generation simultaneously. The present work presents a numerical investigation on natural convection with non-uniform heat generation through which the heat generated by the fluid fuel is removed out of the core region when the reactor is under post-accident condition or zero-power condition. The two-group neutron diffusion equation is applied to calculated neutron flux distribution, which leads to non-uniform heat generation. The SIMPLER algorithm is used to calculate natural convective heat transfer rate with isothermal or adiabatic rigid walls. These two models are coupled through the temperature field and heat sources. The peculiarities of natural convection with non-uniform heat generation are investigated in a range of Ra numbers (10 3 ∼ 10 7 ) for the laminar regime of fluid motion. In addition, the numerical results are also compared with those containing uniform heat generation.

  10. How accurate is anatomic limb alignment in predicting mechanical limb alignment after total knee arthroplasty?

    Science.gov (United States)

    Lee, Seung Ah; Choi, Sang-Hee; Chang, Moon Jong

    2015-10-27

    Anatomic limb alignment often differs from mechanical limb alignment after total knee arthroplasty (TKA). We sought to assess the accuracy, specificity, and sensitivity for each of three commonly used ranges for anatomic limb alignment (3-9°, 5-10° and 2-10°) in predicting an acceptable range (neutral ± 3°) for mechanical limb alignment after TKA. We also assessed whether the accuracy of anatomic limb alignment was affected by anatomic variation. This retrospective study included 314 primary TKAs. The alignment of the limb was measured with both anatomic and mechanical methods of measurement. We also measured anatomic variation, including the femoral bowing angle, tibial bowing angle, and neck-shaft angle of the femur. All angles were measured on the same full-length standing anteroposterior radiographs. The accuracy, specificity, and sensitivity for each range of anatomic limb alignment were calculated and compared using mechanical limb alignment as the reference standard. The associations between the accuracy of anatomic limb alignment and anatomic variation were also determined. The range of 2-10° for anatomic limb alignment showed the highest accuracy, but it was only 73 % (3-9°, 65 %; 5-10°, 67 %). The specificity of the 2-10° range was 81 %, which was higher than that of the other ranges (3-9°, 69 %; 5-10°, 67 %). However, the sensitivity of the 2-10° range to predict varus malalignment was only 16 % (3-9°, 35 %; 5-10°, 68 %). In addition, the sensitivity of the 2-10° range to predict valgus malalignment was only 43 % (3-9°, 71 %; 5-10°, 43 %). The accuracy of anatomical limb alignment was lower for knees with greater femoral (odds ratio = 1.2) and tibial (odds ratio = 1.2) bowing. Anatomic limb alignment did not accurately predict mechanical limb alignment after TKA, and its accuracy was affected by anatomic variation. Thus, alignment after TKA should be assessed by measuring mechanical alignment rather than anatomic

  11. Nanofabricated racks of aligned and anchored DNA substrates for single-molecule imaging.

    Science.gov (United States)

    Gorman, Jason; Fazio, Teresa; Wang, Feng; Wind, Shalom; Greene, Eric C

    2010-01-19

    Single-molecule studies of biological macromolecules can benefit from new experimental platforms that facilitate experimental design and data acquisition. Here we develop new strategies to construct curtains of DNA in which the molecules are aligned with respect to one another and maintained in an extended configuration by anchoring both ends of the DNA to the surface of a microfluidic sample chamber that is otherwise coated with an inert lipid bilayer. This "double-tethered" DNA substrate configuration is established through the use of nanofabricated rack patterns comprised of two distinct functional elements: linear barriers to lipid diffusion that align DNA molecules anchored by one end to the bilayer and antibody-coated pentagons that provide immobile anchor points for the opposite ends of the DNA. These devices enable the alignment and anchoring of thousands of individual DNA molecules, which can then be visualized using total internal reflection fluorescence microscopy under conditions that do not require continuous application of buffer flow to stretch the DNA. This unique strategy offers the potential for studying protein-DNA interactions on large DNA substrates without compromising measurements through application of hydrodynamic force. We provide a proof-of-principle demonstration that double-tethered DNA curtains made with nanofabricated rack patterns can be used in a one-dimensional diffusion assay that monitors the motion of quantum dot-tagged proteins along DNA.

  12. Strategic Alignment and New Product Development

    DEFF Research Database (Denmark)

    Acur, Nuran; Kandemir, Destan; Boer, Harry

    2012-01-01

    Strategic alignment is widely accepted as a prerequisite for a firm’s success, but insight into the role of alignment in, and its impact on, the new product evelopment (NPD) process and its performance is less well developed. Most publications on this topic either focus on one form of alignment...... of NPD performance indicators. Strategic planning and innovativeness appear to affect technological, market, and NPD-marketing alignment positively. Environmental munificence is negatively associated with NPD-marketing alignment, but has no effect on the two other forms of alignment. Technological change...... has a positive effect on technological alignment, a negative effect on NPD-marketing alignment, but no effect on market alignment. These findings suggest that internal capabilities are more likely to be associated with the development of strategic alignment than environmental factors are. Furthermore...

  13. Magneto-acoustic resonance in a non-uniform current carrying plasma column

    OpenAIRE

    Vaclavik, J.

    2017-01-01

    The forced radial magneto-acoustic oscillations in a plasma column with nonuniform mass density and temperature are investigated. It turns out that the oscillations have a resonant character similar to that of the magneto-acoustic oscillations in a uniform plasma column. The properties of the axial and azimuthal components of the oscillating magnetic field are discussed in detail

  14. Non-uniform approximations for sums of discrete m-dependent random variables

    OpenAIRE

    Vellaisamy, P.; Cekanavicius, V.

    2013-01-01

    Non-uniform estimates are obtained for Poisson, compound Poisson, translated Poisson, negative binomial and binomial approximations to sums of of m-dependent integer-valued random variables. Estimates for Wasserstein metric also follow easily from our results. The results are then exemplified by the approximation of Poisson binomial distribution, 2-runs and $m$-dependent $(k_1,k_2)$-events.

  15. Selective catalytic reduction converter design: The effect of ammonia nonuniformity at inlet

    International Nuclear Information System (INIS)

    Paramadayalan, Thiyagarajan; Pant, Atul

    2013-01-01

    A three-dimensional CFD model of SCR converter with detailed chemistry is developed. The model is used to study the effects of radial variation in inlet ammonia profile on SCR emission performance at different temperatures. The model shows that radial variation in inlet ammonia concentration affects the SCR performance in the operating range of 200-400 .deg. C. In automotive SCR systems, ammonia is non-uniformly distributed due to evaporation/reaction of injected urea, and using a 1D model or a 3D model with flat ammonia profile at inlet for these conditions can result in erroneous emission prediction. The 3D SCR model is also used to study the effect of converter design parameters like inlet cone angle and monolith cell density on the SCR performance for a non-uniform ammonia concentration profile at the inlet. The performance of SCR is evaluated using DeNO x efficiency and ammonia slip

  16. Linearization of Nonautonomous Impulsive System with Nonuniform Exponential Dichotomy

    Directory of Open Access Journals (Sweden)

    Yongfei Gao

    2014-01-01

    Full Text Available This paper gives a version of Hartman-Grobman theorem for the impulsive differential equations. We assume that the linear impulsive system has a nonuniform exponential dichotomy. Under some suitable conditions, we proved that the nonlinear impulsive system is topologically conjugated to its linear system. Indeed, we do construct the topologically equivalent function (the transformation. Moreover, the method to prove the topological conjugacy is quite different from those in previous works (e.g., see Barreira and Valls, 2006.

  17. Tunable pinning effects produced by non-uniform antidot arrays in YBCO thin films

    Energy Technology Data Exchange (ETDEWEB)

    George, J.; Jones, A.; Al-Qurainy, M. [Institute for Superconducting and Electronic Materials, University of Wollongong, NSW (Australia); Fedoseev, S.A. [Institute for Superconducting and Electronic Materials, University of Wollongong, NSW (Australia); Centre for Medical Radiation Physics, University of Wollongong, NSW (Australia); Rosenfeld, A. [Centre for Medical Radiation Physics, University of Wollongong, NSW (Australia); Pan, A.V. [Institute for Superconducting and Electronic Materials, University of Wollongong, NSW (Australia); National Research Nuclear University MEPhI (Moscow Engineering Physics Institute), Moscow (Russian Federation)

    2017-04-15

    Uniform, graded and spaced arrays of 3 μm triangular antidots in pulsed laser deposited YBa{sub 2}Cu{sub 3}O{sub 7} (YBCO) superconducting thin films are compared by examining the improvements in the critical current density J{sub c} they produced. The comparison is made to establish the role of their lithographically defined (non-)uniformity and the effectiveness to control and/or enhance the critical current density. It is found that almost all types of non-uniform arrays, including graded ones enhance J{sub c} over the broad applied magnetic field and temperature range due to the modified critical state. Whereas uniform arrays of antidots either reduce or produce no effect on J{sub c} compared to the original (as-deposited) thin films. (copyright 2017 by WILEY-VCH Verlag GmbH and Co. KGaA, Weinheim)

  18. ABS: Sequence alignment by scanning

    KAUST Repository

    Bonny, Mohamed Talal; Salama, Khaled N.

    2011-01-01

    Sequence alignment is an essential tool in almost any computational biology research. It processes large database sequences and considered to be high consumers of computation time. Heuristic algorithms are used to get approximate but fast results. We introduce fast alignment algorithm, called Alignment By Scanning (ABS), to provide an approximate alignment of two DNA sequences. We compare our algorithm with the well-known alignment algorithms, the FASTA (which is heuristic) and the 'Needleman-Wunsch' (which is optimal). The proposed algorithm achieves up to 76% enhancement in alignment score when it is compared with the FASTA Algorithm. The evaluations are conducted using different lengths of DNA sequences. © 2011 IEEE.

  19. ABS: Sequence alignment by scanning

    KAUST Repository

    Bonny, Mohamed Talal

    2011-08-01

    Sequence alignment is an essential tool in almost any computational biology research. It processes large database sequences and considered to be high consumers of computation time. Heuristic algorithms are used to get approximate but fast results. We introduce fast alignment algorithm, called Alignment By Scanning (ABS), to provide an approximate alignment of two DNA sequences. We compare our algorithm with the well-known alignment algorithms, the FASTA (which is heuristic) and the \\'Needleman-Wunsch\\' (which is optimal). The proposed algorithm achieves up to 76% enhancement in alignment score when it is compared with the FASTA Algorithm. The evaluations are conducted using different lengths of DNA sequences. © 2011 IEEE.

  20. Fast global sequence alignment technique

    KAUST Repository

    Bonny, Mohamed Talal

    2011-11-01

    Bioinformatics database is growing exponentially in size. Processing these large amount of data may take hours of time even if super computers are used. One of the most important processing tool in Bioinformatics is sequence alignment. We introduce fast alignment algorithm, called \\'Alignment By Scanning\\' (ABS), to provide an approximate alignment of two DNA sequences. We compare our algorithm with the wellknown sequence alignment algorithms, the \\'GAP\\' (which is heuristic) and the \\'Needleman-Wunsch\\' (which is optimal). The proposed algorithm achieves up to 51% enhancement in alignment score when it is compared with the GAP Algorithm. The evaluations are conducted using different lengths of DNA sequences. © 2011 IEEE.

  1. Phase retrieval from a single fringe pattern by using empirical wavelet transform

    International Nuclear Information System (INIS)

    Guo, Xiaopeng; Zhao, Hong; Wang, Xin

    2015-01-01

    Phase retrieval from a single fringe pattern is one of the key tasks in optical metrology. In this paper, we present a new method for phase retrieval from a single fringe pattern based on empirical wavelet transform. In the proposed method, a fringe pattern can be effectively divided into three components: nonuniform background, fringes and random noise, which are described in different sub-pass. So the phase distribution information can be robustly extracted from fringes representing a fundamental frequency component. In simulation and a practical projection fringes test, the performance of the present method is successfully verified by comparing with the conventional wavelet transform method in terms of both image quality and phase estimation errors. (paper)

  2. Pareto optimal pairwise sequence alignment.

    Science.gov (United States)

    DeRonne, Kevin W; Karypis, George

    2013-01-01

    Sequence alignment using evolutionary profiles is a commonly employed tool when investigating a protein. Many profile-profile scoring functions have been developed for use in such alignments, but there has not yet been a comprehensive study of Pareto optimal pairwise alignments for combining multiple such functions. We show that the problem of generating Pareto optimal pairwise alignments has an optimal substructure property, and develop an efficient algorithm for generating Pareto optimal frontiers of pairwise alignments. All possible sets of two, three, and four profile scoring functions are used from a pool of 11 functions and applied to 588 pairs of proteins in the ce_ref data set. The performance of the best objective combinations on ce_ref is also evaluated on an independent set of 913 protein pairs extracted from the BAliBASE RV11 data set. Our dynamic-programming-based heuristic approach produces approximated Pareto optimal frontiers of pairwise alignments that contain comparable alignments to those on the exact frontier, but on average in less than 1/58th the time in the case of four objectives. Our results show that the Pareto frontiers contain alignments whose quality is better than the alignments obtained by single objectives. However, the task of identifying a single high-quality alignment among those in the Pareto frontier remains challenging.

  3. Noisy: Identification of problematic columns in multiple sequence alignments

    Directory of Open Access Journals (Sweden)

    Grünewald Stefan

    2008-06-01

    Full Text Available Abstract Motivation Sequence-based methods for phylogenetic reconstruction from (nucleic acid sequence data are notoriously plagued by two effects: homoplasies and alignment errors. Large evolutionary distances imply a large number of homoplastic sites. As most protein-coding genes show dramatic variations in substitution rates that are not uncorrelated across the sequence, this often leads to a patchwork pattern of (i phylogenetically informative and (ii effectively randomized regions. In highly variable regions, furthermore, alignment errors accumulate resulting in sometimes misleading signals in phylogenetic reconstruction. Results We present here a method that, based on assessing the distribution of character states along a cyclic ordering of the taxa, allows the identification of phylogenetically uninformative homoplastic sites in a multiple sequence alignment. Removal of these sites appears to improve the performance of phylogenetic reconstruction algorithms as measured by various indices of "tree quality". In particular, we obtain more stable trees due to the exclusion of phylogenetically incompatible sites that most likely represent strongly randomized characters. Software The computer program noisy implements this approach. It can be employed to improving phylogenetic reconstruction capability with quite a considerable success rate whenever (1 the average bootstrap support obtained from the original alignment is low, and (2 there are sufficiently many taxa in the data set – at least, say, 12 to 15 taxa. The software can be obtained under the GNU Public License from http://www.bioinf.uni-leipzig.de/Software/noisy/.

  4. Nonuniform nuclear structures and QPOs in giant flares

    International Nuclear Information System (INIS)

    Sotani, Hajime

    2012-01-01

    We show that the shear modes in the neutron star crust are quite sensitive to the existence of nonuniform nuclear structures, the so-called “pasta”. Due to the existence of pasta phase, the frequencies of shear modes are reduced. Since the torsional shear frequencies depend strongly on the structure of pasta phase, through the observations of stellar oscillations, one can probe the pasta structure in the crust. Additionally, considering the effect of pasta phase, we show the possibility to explain all the observed frequencies in the SGR 1806-20 with using only crust torsional oscillations.

  5. Nonuniform nuclear structures and QPOs in giant flares

    Energy Technology Data Exchange (ETDEWEB)

    Sotani, Hajime [Division of Theoretical Astronomy, National Astronomical Observatory of Japan, 2-21-1 Osawa, Mitaka, Tokyo 181-8588 (Japan)

    2012-11-12

    We show that the shear modes in the neutron star crust are quite sensitive to the existence of nonuniform nuclear structures, the so-called 'pasta'. Due to the existence of pasta phase, the frequencies of shear modes are reduced. Since the torsional shear frequencies depend strongly on the structure of pasta phase, through the observations of stellar oscillations, one can probe the pasta structure in the crust. Additionally, considering the effect of pasta phase, we show the possibility to explain all the observed frequencies in the SGR 1806-20 with using only crust torsional oscillations.

  6. A Test of Thick-Target Nonuniform Ionization as an Explanation for Breaks in Solar Flare Hard X-Ray Spectra

    Science.gov (United States)

    Holman, gordon; Dennis Brian R.; Tolbert, Anne K.; Schwartz, Richard

    2010-01-01

    Solar nonthermal hard X-ray (HXR) flare spectra often cannot be fitted by a single power law, but rather require a downward break in the photon spectrum. A possible explanation for this spectral break is nonuniform ionization in the emission region. We have developed a computer code to calculate the photon spectrum from electrons with a power-law distribution injected into a thick-target in which the ionization decreases linearly from 100% to zero. We use the bremsstrahlung cross-section from Haug (1997), which closely approximates the full relativistic Bethe-Heitler cross-section, and compare photon spectra computed from this model with those obtained by Kontar, Brown and McArthur (2002), who used a step-function ionization model and the Kramers approximation to the cross-section. We find that for HXR spectra from a target with nonuniform ionization, the difference (Delta-gamma) between the power-law indexes above and below the break has an upper limit between approx.0.2 and 0.7 that depends on the power-law index delta of the injected electron distribution. A broken power-law spectrum with a. higher value of Delta-gamma cannot result from nonuniform ionization alone. The model is applied to spectra obtained around the peak times of 20 flares observed by the Ramaty High Energy Solar Spectroscopic Imager (RHESSI from 2002 to 2004 to determine whether thick-target nonuniform ionization can explain the measured spectral breaks. A Monte Carlo method is used to determine the uncertainties of the best-fit parameters, especially on Delta-gamma. We find that 15 of the 20 flare spectra require a downward spectral break and that at least 6 of these could not be explained by nonuniform ionization alone because they had values of Delta-gamma with less than a 2.5% probability of being consistent with the computed upper limits from the model. The remaining 9 flare spectra, based on this criterion, are consistent with the nonuniform ionization model.

  7. Alignment for CSR

    International Nuclear Information System (INIS)

    Wang Shoujin; Man Kaidi; Guo Yizhen; Cai Guozhu; Guo Yuhui

    2002-01-01

    Cooled Storage Ring of Heavy Ion Research Facility in Lanzhou (HIRFL-CSR) belongs to China great scientific project in China. The alignment for it is very difficult because of very large area and very high accuracy. For the special case in HIRFL-CSR, some new methods and new instruments are used, including the construction of survey control network, the usage of laser tracker, and CSR alignment database system with applications developed to store and analyze data. The author describes the whole procedure of CSR alignment

  8. Differences in pediatric vertical ground reaction force between planovalgus and neutrally aligned feet.

    Science.gov (United States)

    Pauk, Jolanta; Szymul, Joanna

    2014-01-01

    Ground reaction forces (GRF) reflect the force history of human body contact with the ground. The purpose of this study was to explore human gait abnormalities due to planovalgus by comparing vertical GRF data between individuals with planovalgus and those with neutrally aligned feet. Second we estimated associations between various measurements and vertical GRF parameters in a pediatric population. Boys and girls between the ages of 4 and 18 years (72 planovalgus feet and 74 neutrally aligned feet) took part in this study. Ground reaction forces were recorded by two Kistler platforms and normalized to body weight. Comparison of vertical GRF between planovalgus and neutrally aligned feet suggests that the first and the second peaks of vertical force (Fz1, Fz2) are most affected by planovalgus. The results also indicate that neutrally aligned feet display a different ground reaction force pattern than planovalgus, and that differences between boys and girls may be observed. The shape of the vertical GRF curve can help in clinical interpretation of abnormal gait.

  9. Estimation of subcriticality and fuel concentration by using 'pattern matching' of neutron flux distribution under non uniformed system

    International Nuclear Information System (INIS)

    Ishitani, Kazuki; Yamane, Yoshihiro

    1999-01-01

    In nuclear fuel reprocessing plants, monitoring the spatial profile of neutron flux to infer subcriticality and distribution of fuel concentration using detectors such as PSPC, is very beneficial in sight of criticality safety. In this paper a method of subcriticality and fuel concentration estimation which is supposed to use under non-uniformed system is proposed. Its basic concept is the pattern matching between measured neutron flux distribution and beforehand calculated one. In any kind of subcriticality estimation, we can regard that measured neutron counts put any kind of black box, and then this black box outputs subcriticality. We proposed the use of artificial neural network or 'pattern matching' as black box which have no theoretical clear base. These method are wholly based on the calculated value as recently advancement of computer code accuracy for criticality safety. The most difference between indirect bias estimation method and our method is that our new approach target are the unknown non-uniform system. (J.P.N.)

  10. Effects of Knee Alignments and Toe Clip on Frontal Plane Knee Biomechanics in Cycling

    Science.gov (United States)

    Shen, Guangping; Zhang, Songning; Bennett, Hunter J.; Martin, James C.; Crouter, Scott E.; Fitzhugh, Eugene C.

    2018-01-01

    Effects of knee alignment on the internal knee abduction moment (KAM) in walking have been widely studied. The KAM is closely associated with the development of medial knee osteoarthritis. Despite the importance of knee alignment, no studies have explored its effects on knee frontal plane biomechanics during stationary cycling. The purpose of this study was to examine the effects of knee alignment and use of a toe clip on the knee frontal plane biomechanics during stationary cycling. A total of 32 participants (11 varus, 11 neutral, and 10 valgus alignment) performed five trials in each of six cycling conditions: pedaling at 80 rpm and 0.5 kg (40 Watts), 1.0 kg (78 Watts), and 1.5 kg (117 Watts) with and without a toe clip. A motion analysis system and a customized instrumented pedal were used to collect 3D kinematic and kinetic data. A 3 × 2 × 3 (group × toe clip × workload) mixed design ANOVA was used for statistical analysis (p < 0.05). There were two different knee frontal plane loading patterns, internal abduction and adduction moment, which were affected by knee alignment type. The knee adduction angle was 12.2° greater in the varus group compared to the valgus group (p = 0.001), yet no difference was found for KAM among groups. Wearing a toe clip increased the knee adduction angle by 0.95º (p = 0.005). The findings of this study indicate that stationary cycling may be a safe exercise prescription for people with knee malalignments. In addition, using a toe clip may not have any negative effects on knee joints during stationary cycling. Key points Varus or valgus alignment did not cause increased frontal-plane knee joint loading, suggesting stationary cycling is a safe exercise. This study supports that using a toe clip did not lead to abnormal frontal-plane knee loading during stationary cycling. Two different knee frontal plane loading patterns, knee abduction and adduction moment, were observed during stationary cycling, which are likely affected by

  11. A generalized global alignment algorithm.

    Science.gov (United States)

    Huang, Xiaoqiu; Chao, Kun-Mao

    2003-01-22

    Homologous sequences are sometimes similar over some regions but different over other regions. Homologous sequences have a much lower global similarity if the different regions are much longer than the similar regions. We present a generalized global alignment algorithm for comparing sequences with intermittent similarities, an ordered list of similar regions separated by different regions. A generalized global alignment model is defined to handle sequences with intermittent similarities. A dynamic programming algorithm is designed to compute an optimal general alignment in time proportional to the product of sequence lengths and in space proportional to the sum of sequence lengths. The algorithm is implemented as a computer program named GAP3 (Global Alignment Program Version 3). The generalized global alignment model is validated by experimental results produced with GAP3 on both DNA and protein sequences. The GAP3 program extends the ability of standard global alignment programs to recognize homologous sequences of lower similarity. The GAP3 program is freely available for academic use at http://bioinformatics.iastate.edu/aat/align/align.html.

  12. Interference patterns of Bose-condensed gases in a two-dimensional optical lattice

    International Nuclear Information System (INIS)

    Liu Shujuan; Xiong Hongwei; Xu Zhijun; Huang Guoxiang

    2003-01-01

    For a Bose-condensed gas confined in a magnetic trap and in a two-dimensional (2D) optical lattice, the non-uniform distribution of atoms in different lattice sites is considered based on the Gross-Pitaevskii equation. A propagator method is used to investigate the time evolution of 2D interference patterns after (i) only the optical lattice is switched off, and (ii) both the optical lattice and the magnetic trap are switched off. An analytical description on the motion of side peaks in the interference patterns is presented by using the density distribution in a momentum space

  13. Thermal stability improvement of a multiple finger power SiGe heterojunction bipolar transistor under different power dissipations using non-uniform finger spacing

    International Nuclear Information System (INIS)

    Chen Liang; Zhang Wan-Rong; Jin Dong-Yue; Shen Pei; Xie Hong-Yun; Ding Chun-Bao; Xiao Ying; Sun Bo-Tao; Wang Ren-Qing

    2011-01-01

    A method of non-uniform finger spacing is proposed to enhance thermal stability of a multiple finger power SiGe heterojunction bipolar transistor under different power dissipations. Temperature distribution on the emitter fingers of a multi-finger SiGe heterojunction bipolar transistor is studied using a numerical electro-thermal model. The results show that the SiGe heterojunction bipolar transistor with non-uniform finger spacing has a small temperature difference between fingers compared with a traditional uniform finger spacing heterojunction bipolar transistor at the same power dissipation. What is most important is that the ability to improve temperature non-uniformity is not weakened as power dissipation increases. So the method of non-uniform finger spacing is very effective in enhancing the thermal stability and the power handing capability of power device. Experimental results verify our conclusions. (interdisciplinary physics and related areas of science and technology)

  14. On the burnout in annular channels at non-uniform heat release distribution in length

    International Nuclear Information System (INIS)

    Ornatskij, A.P.; Chernobaj, V.A.; Vasil'ev, A.F.; Struts, G.V.

    1982-01-01

    The effect of axial heat release non-uniformity on the conditions of the burnout in annular channels is investigated. The investigation is carried out in annular channels with different laws of heat flux density distribution by channel length. The heat release non-uniformity coefficient was varied from 4.4 to 10, the pressure from 9.8 to 17.6 MPa, mass rate from 500 to 1700 kg (m 2 xS), liquid temperature (chemically desalted water) at the channel inlet constituted 30-300 deg C. The experiments have been performed at the test bench with a closed circulation circuit. The data obtained testify to the fact that under non-uniform heat release the influence of main operating parameters on the value of critical power is of the same character as under uniform heat release. The character of wall temperature variation by channel length before the burnout is determined by the form of heat supply temperature profile. The temperature maximum is observed in the region lying behind the cross section with maximum heat flux. The conclusion is drawn that the dominant influence on the position of the cross section in which the burnout arises is exerted by the form of heat flux density distribution by length. Independently of this distribution form the burnout developes when the vapour content near the wall reaches a limiting value

  15. Pairwise Sequence Alignment Library

    Energy Technology Data Exchange (ETDEWEB)

    2015-05-20

    Vector extensions, such as SSE, have been part of the x86 CPU since the 1990s, with applications in graphics, signal processing, and scientific applications. Although many algorithms and applications can naturally benefit from automatic vectorization techniques, there are still many that are difficult to vectorize due to their dependence on irregular data structures, dense branch operations, or data dependencies. Sequence alignment, one of the most widely used operations in bioinformatics workflows, has a computational footprint that features complex data dependencies. The trend of widening vector registers adversely affects the state-of-the-art sequence alignment algorithm based on striped data layouts. Therefore, a novel SIMD implementation of a parallel scan-based sequence alignment algorithm that can better exploit wider SIMD units was implemented as part of the Parallel Sequence Alignment Library (parasail). Parasail features: Reference implementations of all known vectorized sequence alignment approaches. Implementations of Smith Waterman (SW), semi-global (SG), and Needleman Wunsch (NW) sequence alignment algorithms. Implementations across all modern CPU instruction sets including AVX2 and KNC. Language interfaces for C/C++ and Python.

  16. Theoretical investigations on two-phase flow instability in parallel channels under axial non-uniform heating

    International Nuclear Information System (INIS)

    Lu, Xiaodong; Wu, Yingwei; Zhou, Linglan; Tian, Wenxi; Su, Guanghui; Qiu, Suizheng; Zhang, Hong

    2014-01-01

    Highlights: • We developed a model based on homogeneous flow model to analyze two-phase flow instability in parallel channels. • The influence of axial non-uniform heating on the system stability has been investigated. • Influences of various factors on system instability under cosine heat flux have been studied. • The system under top-peaked heat flux is the most stable system. - Abstract: Two-phase flow instability in parallel channels heated by axial non-uniform heat flux has been theoretically studied in this paper. The system control equations of parallel channels were established based on the homogeneous flow model in two-phase region. Semi-implicit finite-difference scheme and staggered mesh method were used to discretize the equations, and the difference equations were solved by chasing method. Cosine, bottom-peaked and top-peaked heat fluxes were used to study the influence of non-uniform heating on two-phase flow instability of the parallel channels system. The marginal stability boundaries (MSB) of parallel channels and three-dimensional instability spaces (or instability reefs) under different heat flux conditions have been obtained. Compared with axial uniform heating, axial non-uniform heating will affect the system stability. Cosine and bottom-peaked heat fluxes can destabilize the system stability in high inlet subcooling region, while the opposite effect can be found in low inlet subcooling region. However, top-peaked heat flux can enhance the system stability in the whole region. In addition, for cosine heat flux, increasing the system pressure or inlet resistance coefficient can strengthen the system stability, and increasing the heating power will destabilize the system stability. The influence of inlet subcooling number on the system stability is multi-valued under cosine heat flux

  17. Progressive multiple sequence alignments from triplets

    Directory of Open Access Journals (Sweden)

    Stadler Peter F

    2007-07-01

    Full Text Available Abstract Background The quality of progressive sequence alignments strongly depends on the accuracy of the individual pairwise alignment steps since gaps that are introduced at one step cannot be removed at later aggregation steps. Adjacent insertions and deletions necessarily appear in arbitrary order in pairwise alignments and hence form an unavoidable source of errors. Research Here we present a modified variant of progressive sequence alignments that addresses both issues. Instead of pairwise alignments we use exact dynamic programming to align sequence or profile triples. This avoids a large fractions of the ambiguities arising in pairwise alignments. In the subsequent aggregation steps we follow the logic of the Neighbor-Net algorithm, which constructs a phylogenetic network by step-wisely replacing triples by pairs instead of combining pairs to singletons. To this end the three-way alignments are subdivided into two partial alignments, at which stage all-gap columns are naturally removed. This alleviates the "once a gap, always a gap" problem of progressive alignment procedures. Conclusion The three-way Neighbor-Net based alignment program aln3nn is shown to compare favorably on both protein sequences and nucleic acids sequences to other progressive alignment tools. In the latter case one easily can include scoring terms that consider secondary structure features. Overall, the quality of resulting alignments in general exceeds that of clustalw or other multiple alignments tools even though our software does not included heuristics for context dependent (mismatch scores.

  18. ALIGNMENT OF PROTOSTARS AND CIRCUMSTELLAR DISKS DURING THE EMBEDDED PHASE

    International Nuclear Information System (INIS)

    Spalding, Christopher; Batygin, Konstantin; Adams, Fred C.

    2014-01-01

    Star formation proceeds via the collapse of a molecular cloud core over multiple dynamical timescales. Turbulence within cores results in a spatially non-uniform angular momentum of the cloud, causing a stochastic variation in the orientation of the disk forming from the collapsing material. In the absence of star-disk angular momentum coupling, such disk-tilting would provide a natural mechanism for the production of primordial spin-orbit misalignments in the resulting planetary systems. However, owing to high accretion rates in the embedded phase of star formation, the inner edge of the circumstellar disk extends down to the stellar surface, resulting in efficient gravitational and accretional angular momentum transfer between the star and the disk. Here, we demonstrate that the resulting gravitational coupling is sufficient to suppress any significant star-disk misalignment, with accretion playing a secondary role. The joint tilting of the star-disk system leads to a stochastic wandering of star-aligned bipolar outflows. Such wandering widens the effective opening angle of stellar outflows, allowing for more efficient clearing of the remainder of the protostar's gaseous envelope. Accordingly, the processes described in this work provide an additional mechanism responsible for sculpting the stellar initial mass function

  19. Large-Scale Patterns in a Minimal Cognitive Flocking Model: Incidental Leaders, Nematic Patterns, and Aggregates

    Science.gov (United States)

    Barberis, Lucas; Peruani, Fernando

    2016-12-01

    We study a minimal cognitive flocking model, which assumes that the moving entities navigate using the available instantaneous visual information exclusively. The model consists of active particles, with no memory, that interact by a short-ranged, position-based, attractive force, which acts inside a vision cone (VC), and lack velocity-velocity alignment. We show that this active system can exhibit—due to the VC that breaks Newton's third law—various complex, large-scale, self-organized patterns. Depending on parameter values, we observe the emergence of aggregates or millinglike patterns, the formation of moving—locally polar—files with particles at the front of these structures acting as effective leaders, and the self-organization of particles into macroscopic nematic structures leading to long-ranged nematic order. Combining simulations and nonlinear field equations, we show that position-based active models, as the one analyzed here, represent a new class of active systems fundamentally different from other active systems, including velocity-alignment-based flocking systems. The reported results are of prime importance in the study, interpretation, and modeling of collective motion patterns in living and nonliving active systems.

  20. Belt Aligning Revisited

    Directory of Open Access Journals (Sweden)

    Yurchenko Vadim

    2017-01-01

    parts of the conveyor, the sides of the belt wear intensively. This results in reducing the life of the belt. The reasons for this phenomenon are well investigated, but the difficulty lies in the fact that they all act simultaneously. The belt misalignment prevention can be carried out in two ways: by minimizing the effect of causes and by aligning the belt. The construction of aligning devices and errors encountered in practice are considered in this paper. Self-aligning roller supports rotational in plan view are recommended as a means of combating the belt misalignment.

  1. Measuring covariation in RNA alignments: Physical realism improves information measures

    DEFF Research Database (Denmark)

    Lindgreen, Stinus; Gardner, Paul Phillip; Krogh, Anders

    2006-01-01

    Motivation: The importance of non-coding RNAs is becoming increasingly evident, and often the function of these molecules depends on the structure. It is common to use alignments of related RNA sequences to deduce the consensus secondary structure by detecting patterns of co-evolution. A central...... part of such an analysis is to measure covariation between two positions in an alignment. Here, we rank various measures ranging from simple mutual information to more advanced covariation measures. Results: Mutual information is still used for secondary structure prediction, but the results...... of this study indicate which measures are useful. Incorporating more structural information by considering e.g. indels and stacking improves accuracy, suggesting that physically realistic measures yield improved predictions. This can be used to improve both current and future programs for secondary structure...

  2. Antares beam-alignment-system performance

    International Nuclear Information System (INIS)

    Appert, Q.D.; Bender, S.C.

    1983-01-01

    The beam alignment system for the 24-beam-sector Antares CO 2 fusion laser automatically aligns more than 200 optical elements. A visible-wavelength alignment technique is employed which uses a telescope/TV system to view point-light sources appropriately located down the beamline. The centroids of the light spots are determined by a video tracker, which generates error signals used by the computer control system to move appropriate mirrors in a closed-loop system. Final touch-up alignment is accomplished by projecting a CO 2 alignment laser beam through the system and sensing its position at the target location. The techniques and control algorithms employed have resulted in alignment accuracies exceeding design requirements. By employing video processing to determine the centroids of diffraction images and by averaging over multiple TV frames, we achieve alignment accuracies better than 0.1 times system diffraction limits in the presence of air turbulence

  3. A UNIFIED MODEL OF GRAIN ALIGNMENT: RADIATIVE ALIGNMENT OF INTERSTELLAR GRAINS WITH MAGNETIC INCLUSIONS

    Energy Technology Data Exchange (ETDEWEB)

    Hoang, Thiem [Canadian Institute for Theoretical Astrophysics, University of Toronto, 60 St. George Street, Toronto, ON M5S 3H8 (Canada); Lazarian, A. [Department of Astronomy, University of Wisconsin-Madison (United States)

    2016-11-10

    The radiative torque (RAT) alignment of interstellar grains with ordinary paramagnetic susceptibilities has been supported by earlier studies. The alignment of such grains depends on the so-called RAT parameter q {sup max}, which is determined by the grain shape. In this paper, we elaborate on our model of RAT alignment for grains with enhanced magnetic susceptibility due to iron inclusions, such that RAT alignment is magnetically enhanced, which we term the MRAT mechanism. Such grains can be aligned with high angular momentum at the so-called high- J attractor points, achieving a high degree of alignment. Using our analytical model of RATs, we derive the critical value of the magnetic relaxation parameter δ {sub m} to produce high- J attractor points as functions of q {sup max} and the anisotropic radiation angle relative to the magnetic field ψ . We find that if about 10% of the total iron abundance present in silicate grains is forming iron clusters, this is sufficient to produce high- J attractor points for all reasonable values of q {sup max}. To calculate the degree of grain alignment, we carry out numerical simulations of MRAT alignment by including stochastic excitations from gas collisions and magnetic fluctuations. We show that large grains can achieve perfect alignment when the high- J attractor point is present, regardless of the values of q {sup max}. Our obtained results pave the way for the physical modeling of polarized thermal dust emission as well as magnetic dipole emission. We also find that millimeter-sized grains in accretion disks may be aligned with the magnetic field if they are incorporated with iron nanoparticles.

  4. Absolute parametric instability of low frequency waves in a 2-D nonuniform anisotropic warm plasma

    International Nuclear Information System (INIS)

    Zaki, N.G.

    2004-01-01

    Using the separation method, the problem of absolute parametric instability (API) of electrostatic waves in magnetized pumped warm plasma is investigated. In this case the effect of static strong magnetic field is considered. The problem of strong magnetic field is solved in 2-D nonuniform plane plasma. The equations which describe the spatial part of the electric potential are obtained. Also the growth rates and conditions of the parametric instability for periodic cases are obtained. It is found that the spatial nonuniformity of the plasma exerts a stabilizing effect on the API. It is shown that the growth rates of periodic and aperiodic API in warm plasma are reduced in comparison with a cold plasma case

  5. Design of multiplier-less sharp non-uniform cosine modulated filter banks for efficient channelizers in software defined radio

    Directory of Open Access Journals (Sweden)

    Shaeen Kalathil

    2016-03-01

    Full Text Available Forthcoming software defined radios require filter banks which satisfy stringent specifications efficiently with low implementation complexity. Cosine modulated filter banks (CMFB have simple and efficient design procedure. The different wireless standards have different channel spacing or bandwidths and hence demand non-uniform decomposition of subbands. The non-uniform CMFB can be obtained from a uniform CMFB in a simple and efficient approach by merging the adjacent channels of the uniform CMFB. Very narrow transition width filters with low complexity can be achieved using frequency response masking (FRM filter as prototype filter. The complexity is further reduced by the multiplier-less realization of filter banks in which the least number of signed power of two (SPT terms is achieved by representing the filter coefficients using canonic signed digit (CSD representation and then optimizing using suitable modified meta-heuristic algorithms. Hybrid meta-heuristic algorithms are used in this paper. A hybrid algorithm combines the qualities of two meta-heuristic algorithms and results in improved performances with low implementation complexity. Highly frequency selective filter banks characterized by small passband ripple, narrow transition width and high stopband attenuation with non-uniform decomposition of subbands can be designed with least the implementation complexity, using this approach. A digital channelizer can be designed for SDR implementations, using the proposed approach. In this paper, the non-uniform CMFB is designed for various existing wireless standards.

  6. Effect of disjoining pressure in a thin film equation with non-uniform forcing

    KAUST Repository

    MOULTON, D. E.; LEGA, J.

    2013-01-01

    We explore the effect of disjoining pressure on a thin film equation in the presence of a non-uniform body force, motivated by a model describing the reverse draining of a magnetic film. To this end, we use a combination of numerical investigations

  7. Concentration polarization effects on the macromolecular transport in the presence of non-uniform magnetic field: A numerical study using a lumen-wall model

    Energy Technology Data Exchange (ETDEWEB)

    Mohammadpourfard, M., E-mail: Mohammadpour@azaruniv.edu [Department of Mechanical Engineering, Azarbaijan Shahid Madani University, Tabriz 53751-71379 (Iran, Islamic Republic of); Aminfar, H., E-mail: hh_aminfar@tabrizu.ac.ir [Faculty of Mechanical Engineering, University of Tabriz, Tabriz (Iran, Islamic Republic of); Khajeh, K., E-mail: khajeh.k.2005@gmail.com [Faculty of Mechanical Engineering, University of Tabriz, Tabriz (Iran, Islamic Republic of)

    2014-04-01

    In this paper, the concentration polarization phenomena in a two dimensional tube under steady state conditions containing ferrofluid (blood and 4 vol% Fe{sub 3}O{sub 4}) is reported in the presence of non-uniform magnetic field. Lumen-wall model has been used for solving the mass transport equation. Hemodynamics parameters such as flow rate, viscosity, wall shear stress (WSS) and the macromolecules surface concentration which accumulate on the blood vessel wall, influenced the formation and progression of atherosclerosis disease. Effective parameters on the low density lipoprotein (LDL) surface concentration (LSC) such as: the wall filtration velocity, inlet Reynolds number and WSS under applied non-uniform magnetic field have been examined. Numerical solution of governing equations of the flow field have been obtained by using the single-phase model and the control volume technique. Magnetic field is generated by an electric current going through a thin and straight wire oriented perpendicular to the tube. Results show WSS in the vicinity of magnetic field source increased and LSC decreased along the wall. - Highlights: • In this paper the concentration polarization phenomena of blood flow is reported in the presence of non-uniform magnetic field. • In presence of non-uniform magnetic field LSC will decrease along the wall due to the increasing the velocity gradients near the magnetic source. • When non-uniform magnetic field intensity increases, LSC along the wall becomes lower. • Non-uniform magnetic field can affects the flow more in low Reynolds numbers.

  8. The switching characteristics of free layer of patterned magnetic tunnel junction device

    International Nuclear Information System (INIS)

    Chen, C.C.; Wang, Y.R.; Kuo, C.Y.; Wu, J.C.; Horng, Lance; Wu, Teho; Yoshimura, S.; Tsunoda, M.; Takahashi, M.

    2006-01-01

    The free layer switching properties of microstructured magnetic tunnel junctions have been investigated. The M-H loop of nonpatterned film shows ferromagnetic coupling with 10 Oe shifting associated with the interlayer roughness coupling. The MR curve of the patterned element shows stepped minor loop, less loop shifting, and larger coercive field due to shape anisotropy and stray field effects. MFM images of the element show nonuniform domain structures during reversal process

  9. Galaxy Alignments: Theory, Modelling & Simulations

    Science.gov (United States)

    Kiessling, Alina; Cacciato, Marcello; Joachimi, Benjamin; Kirk, Donnacha; Kitching, Thomas D.; Leonard, Adrienne; Mandelbaum, Rachel; Schäfer, Björn Malte; Sifón, Cristóbal; Brown, Michael L.; Rassat, Anais

    2015-11-01

    The shapes of galaxies are not randomly oriented on the sky. During the galaxy formation and evolution process, environment has a strong influence, as tidal gravitational fields in the large-scale structure tend to align nearby galaxies. Additionally, events such as galaxy mergers affect the relative alignments of both the shapes and angular momenta of galaxies throughout their history. These "intrinsic galaxy alignments" are known to exist, but are still poorly understood. This review will offer a pedagogical introduction to the current theories that describe intrinsic galaxy alignments, including the apparent difference in intrinsic alignment between early- and late-type galaxies and the latest efforts to model them analytically. It will then describe the ongoing efforts to simulate intrinsic alignments using both N-body and hydrodynamic simulations. Due to the relative youth of this field, there is still much to be done to understand intrinsic galaxy alignments and this review summarises the current state of the field, providing a solid basis for future work.

  10. The CMS Muon System Alignment

    CERN Document Server

    Martinez Ruiz-Del-Arbol, P

    2009-01-01

    The alignment of the muon system of CMS is performed using different techniques: photogrammetry measurements, optical alignment and alignment with tracks. For track-based alignment, several methods are employed, ranging from a hit and impact point (HIP) algorithm and a procedure exploiting chamber overlaps to a global fit method based on the Millepede approach. For start-up alignment as long as available integrated luminosity is still significantly limiting the size of the muon sample from collisions, cosmic muon and beam halo signatures play a very strong role. During the last commissioning runs in 2008 the first aligned geometries have been produced and validated with data. The CMS offline computing infrastructure has been used in order to perform improved reconstructions. We present the computational aspects related to the calculation of alignment constants at the CERN Analysis Facility (CAF), the production and population of databases and the validation and performance in the official reconstruction. Also...

  11. Self-aligned metallization on organic semiconductor through 3D dual-layer thermal nanoimprint

    International Nuclear Information System (INIS)

    Jung, Y; Cheng, X

    2014-01-01

    High-resolution patterning of metal structures on organic semiconductors is important to the realization of high-performance organic transistors for organic integrated circuit applications. The traditional shadow mask technique has a limited resolution, precluding sub-micron metal structures on organic semiconductors. Thus organic transistors cannot benefit from scaling into the deep sub-micron region to improve their dc and ac performances. In this work, we report an efficient multiple-level metallization on poly (3-hexylthiophene) (P3HT) with a deep sub-micron lateral gap. By using a 3D nanoimprint mold in a dual-layer thermal nanoimprint process, we achieved self-aligned two-level metallization on P3HT. The 3D dual-layer thermal nanoimprint enables the first metal patterns to have suspending side-wings that can clearly define a distance from the second metal patterns. Isotropic and anisotropic side-wing structures can be fabricated through two different schemes. The process based on isotropic side-wings achieves a lateral-gap in the order of 100 nm (scheme 1). A gap of 60 nm can be achieved from the process with anisotropic side-wings (scheme 2). Because of the capability of nanoscale metal patterning on organic semiconductors with high overlay accuracy, this self-aligned metallization technique can be utilized to fabricate high-performance organic metal semiconductor field-effect transistor. (paper)

  12. Phylo-mLogo: an interactive and hierarchical multiple-logo visualization tool for alignment of many sequences

    Directory of Open Access Journals (Sweden)

    Lee DT

    2007-02-01

    Full Text Available Abstract Background When aligning several hundreds or thousands of sequences, such as epidemic virus sequences or homologous/orthologous sequences of some big gene families, to reconstruct the epidemiological history or their phylogenies, how to analyze and visualize the alignment results of many sequences has become a new challenge for computational biologists. Although there are several tools available for visualization of very long sequence alignments, few of them are applicable to the alignments of many sequences. Results A multiple-logo alignment visualization tool, called Phylo-mLogo, is presented in this paper. Phylo-mLogo calculates the variabilities and homogeneities of alignment sequences by base frequencies or entropies. Different from the traditional representations of sequence logos, Phylo-mLogo not only displays the global logo patterns of the whole alignment of multiple sequences, but also demonstrates their local homologous logos for each clade hierarchically. In addition, Phylo-mLogo also allows the user to focus only on the analysis of some important, structurally or functionally constrained sites in the alignment selected by the user or by built-in automatic calculation. Conclusion With Phylo-mLogo, the user can symbolically and hierarchically visualize hundreds of aligned sequences simultaneously and easily check the changes of their amino acid sites when analyzing many homologous/orthologous or influenza virus sequences. More information of Phylo-mLogo can be found at URL http://biocomp.iis.sinica.edu.tw/phylomlogo.

  13. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    G.Gomez

    Since September, the muon alignment system shifted from a mode of hardware installation and commissioning to operation and data taking. All three optical subsystems (Barrel, Endcap and Link alignment) have recorded data before, during and after CRAFT, at different magnetic fields and during ramps of the magnet. This first data taking experience has several interesting goals: •    study detector deformations and movements under the influence of the huge magnetic forces; •    study the stability of detector structures and of the alignment system over long periods, •    study geometry reproducibility at equal fields (specially at 0T and 3.8T); •    reconstruct B=0T geometry and compare to nominal/survey geometries; •    reconstruct B=3.8T geometry and provide DT and CSC alignment records for CMSSW. However, the main goal is to recons...

  14. Vertically Aligned Carbon Nanotube Arrays as Efficient Supports for Faradaic Capacitive Electrodes

    Science.gov (United States)

    Oguntoye, Moses; Holleran, Mary-Kate; Roberts, Katherine; Pesika, Noshir

    Supercapacitors are notable for their ability to deliver energy at higher power (compared to batteries) and store energy at higher density (compared to capacitors) as well as exhibit a long cycle life. In our efforts to further the development of supercapacitors, our focus is on using vertically aligned carbon nanotubes (VACNT) as supports for faradaic capacitive electrode materials. The objective is to develop electrodes functioning in an inexpensive aqueous environment with small potential windows, that store energy at a higher density than carbon materials alone. We describe the different approaches explored to overcome the challenges of non-uniform deposition, poor wetting and array collapse. Materials that are electrochemically anchored to VACNT supports include NiCo2O4, VOx, Fe2O3 and Co-Mn mixed oxides. In each case, the specific capacitance obtained using the VACNT arrays as supports is significantly more than that obtained by direct deposition onto current collectors or by using VACNT alone. The ease of VACNT growth and the degree of coating control achievable using electrodeposition means there is much potential in exploring them as supports for capacitive electrode materials.

  15. Pattern formation of frictional fingers in a gravitational potential

    Science.gov (United States)

    Eriksen, Jon Alm; Toussaint, Renaud; Mâløy, Knut Jørgen; Flekkøy, Eirik; Galland, Olivier; Sandnes, Bjørnar

    2018-01-01

    Aligned finger structures, with a characteristic width, emerge during the slow drainage of a liquid-granular mixture in a tilted Hele-Shaw cell. A transition from vertical to horizontal alignment of the finger structures is observed as the tilting angle and the granular density are varied. An analytical model is presented, demonstrating that the alignment properties are the result of the competition between fluctuating granular stresses and the hydrostatic pressure. The dynamics is reproduced in simulations. We also show how the system explains patterns observed in nature, created during the early stages of a dike formation.

  16. Going from microscopic to macroscopic on nonuniform growing domains.

    Science.gov (United States)

    Yates, Christian A; Baker, Ruth E; Erban, Radek; Maini, Philip K

    2012-08-01

    Throughout development, chemical cues are employed to guide the functional specification of underlying tissues while the spatiotemporal distributions of such chemicals can be influenced by the growth of the tissue itself. These chemicals, termed morphogens, are often modeled using partial differential equations (PDEs). The connection between discrete stochastic and deterministic continuum models of particle migration on growing domains was elucidated by Baker, Yates, and Erban [Bull. Math. Biol. 72, 719 (2010)] in which the migration of individual particles was modeled as an on-lattice position-jump process. We build on this work by incorporating a more physically reasonable description of domain growth. Instead of allowing underlying lattice elements to instantaneously double in size and divide, we allow incremental element growth and splitting upon reaching a predefined threshold size. Such a description of domain growth necessitates a nonuniform partition of the domain. We first demonstrate that an individual-based stochastic model for particle diffusion on such a nonuniform domain partition is equivalent to a PDE model of the same phenomenon on a nongrowing domain, providing the transition rates (which we derive) are chosen correctly and we partition the domain in the correct manner. We extend this analysis to the case where the domain is allowed to change in size, altering the transition rates as necessary. Through application of the master equation formalism we derive a PDE for particle density on this growing domain and corroborate our findings with numerical simulations.

  17. ROC evaluation of SPECT myocardial lesion detectability with and without single iteration non-uniform Chang attenuation compensation using an anthropomorphic female phantom

    International Nuclear Information System (INIS)

    Jang, S.; Jaszczak, R.J.; Duke Univ. Medical Center, Durham, NC; Gilland, D.R.; Turkington, T.G.; Coleman, R.E.; Tsui, B.M.W.; Metz, C.E.

    1998-01-01

    The purpose of this work was to evaluate lesion detectability with and without nonuniform attenuation compensation (AC) in myocardial perfusion SPECT imaging in women using an anthropomorphic phantom and receiver operating characteristics (ROC) methodology. Breast attenuation causes artifacts in reconstructed images and may increase the difficulty of diagnosis of myocardial perfusion imaging in women. The null hypothesis tested using the ROC study was that nonuniform AC does not change the lesion detectability in myocardial perfusion SPECT imaging in women. The authors used a filtered backprojection (FBP) reconstruction algorithm and Chang's single iteration method for AC. In conclusion, with the proposed myocardial defect model nuclear medicine physicians demonstrated no significant difference for the detection of the anterior wall defect; however, a greater accuracy for the detection of the inferior wall defect was observed without nonuniform AC than with it. Medical physicists did not demonstrate any statistically significant difference in defect detection accuracy with or without nonuniform AC in the female phantom

  18. Distributed ISAR Subimage Fusion of Nonuniform Rotating Target Based on Matching Fourier Transform.

    Science.gov (United States)

    Li, Yuanyuan; Fu, Yaowen; Zhang, Wenpeng

    2018-06-04

    In real applications, the image quality of the conventional monostatic Inverse Synthetic Aperture Radar (ISAR) for the maneuvering target is subject to the strong fluctuation of Radar Cross Section (RCS), as the target aspect varies enormously. Meanwhile, the maneuvering target introduces nonuniform rotation after translation motion compensation which degrades the imaging performance of the conventional Fourier Transform (FT)-based method in the cross-range dimension. In this paper, a method which combines the distributed ISAR technique and the Matching Fourier Transform (MFT) is proposed to overcome these problems. Firstly, according to the characteristics of the distributed ISAR, the multiple channel echoes of the nonuniform rotation target from different observation angles can be acquired. Then, by applying the MFT to the echo of each channel, the defocused problem of nonuniform rotation target which is inevitable by using the FT-based imaging method can be avoided. Finally, after preprocessing, scaling and rotation of all subimages, the noncoherent fusion image containing all the RCS information in all channels can be obtained. The accumulation coefficients of all subimages are calculated adaptively according to the their image qualities. Simulation and experimental data are used to validate the effectiveness of the proposed approach, and fusion image with improved recognizability can be obtained. Therefore, by using the distributed ISAR technique and MFT, subimages of high-maneuvering target from different observation angles can be obtained. Meanwhile, by employing the adaptive subimage fusion method, the RCS fluctuation can be alleviated and more recognizable final image can be obtained.

  19. Quantum ratchet effect in a time non-uniform double-kicked model

    Science.gov (United States)

    Chen, Lei; Wang, Zhen-Yu; Hui, Wu; Chu, Cheng-Yu; Chai, Ji-Min; Xiao, Jin; Zhao, Yu; Ma, Jin-Xiang

    2017-07-01

    The quantum ratchet effect means that the directed transport emerges in a quantum system without a net force. The delta-kicked model is a quantum Hamiltonian model for the quantum ratchet effect. This paper investigates the quantum ratchet effect based on a time non-uniform double-kicked model, in which two flashing potentials alternately act on a particle with a homogeneous initial state of zero momentum, while the intervals between adjacent actions are not equal. The evolution equation of the state of the particle is derived from its Schrödinger equation, and the numerical method to solve the evolution equation is pointed out. The results show that quantum resonances can induce the ratchet effect in this time non-uniform double-kicked model under certain conditions; some quantum resonances, which cannot induce the ratchet effect in previous models, can induce the ratchet effect in this model, and the strengths of the ratchet effect in this model are stronger than those in previous models under certain conditions. These results enrich people’s understanding of the delta-kicked model, and provides a new optional scheme to control the quantum transport of cold atoms in experiment.

  20. Restoration of non-uniform exposure motion blurred image

    Science.gov (United States)

    Luo, Yuanhong; Xu, Tingfa; Wang, Ningming; Liu, Feng

    2014-11-01

    Restoring motion-blurred image is the key technologies in the opto-electronic detection system. The imaging sensors such as CCD and infrared imaging sensor, which are mounted on the motion platforms, quickly move together with the platforms of high speed. As a result, the images become blur. The image degradation will cause great trouble for the succeeding jobs such as objects detection, target recognition and tracking. So the motion-blurred images must be restoration before detecting motion targets in the subsequent images. On the demand of the real weapon task, in order to deal with targets in the complex background, this dissertation uses the new theories in the field of image processing and computer vision to research the new technology of motion deblurring and motion detection. The principle content is as follows: 1) When the prior knowledge about degradation function is unknown, the uniform motion blurred images are restored. At first, the blur parameters, including the motion blur extent and direction of PSF(point spread function), are estimated individually in domain of logarithmic frequency. The direction of PSF is calculated by extracting the central light line of the spectrum, and the extent is computed by minimizing the correction between the fourier spectrum of the blurred image and a detecting function. Moreover, in order to remove the strip in the deblurred image, windows technique is employed in the algorithm, which makes the deblurred image clear. 2) According to the principle of infrared image non-uniform exposure, a new restoration model for infrared blurred images is developed. The fitting of infrared image non-uniform exposure curve is performed by experiment data. The blurred images are restored by the fitting curve.

  1. SU-F-E-03: PET/CT Guided Dose Boost to Hypoxic Sub-Volume in Nasopharyngeal Carcinomas Using Self-Optimizing Non-Uniform VMAT

    Energy Technology Data Exchange (ETDEWEB)

    Qiu, J; Zheng, X; Liu, H; Chen, B; Zhuo, W [FuDan University HuaDong Hospital, Institute of Radiation Medicine Fudan University Shanghai, Shanghai (China)

    2016-06-15

    Purpose: This study is to evaluate the feasibility of simultaneously integrated boost (SIB) to hypoxic subvolume (HTV) in nasopharyngeal carcinomas under the guidance of 18F-Fluoromisonidazole (FMISO) PET/CT using a novel non-uniform volumetric modulated arc therapy (VMAT)technique. Methods: Eight nasopharyngeal carcinoma patients treated with conventional uniform VMAT were retrospectively analyzed. For each treatment, actual conventional uniform VMAT plan with two or more arcs (2–2.5 arcs, totally rotating angle < 1000o) was designed with dose boost to hopxic subvolume (total dose, 84Gy) in the gross tumor volme (GTV) under the guidance of 18F- FMISO PET/CT. Based on the same dataset, experimental single arc non-uniform VAMT plans were generated with the same dose prescription using customized software tools. Dosimetric parameters, quality assurance and the efficiency of the treatment delivery were compared between the uniform and non-uniform VMAT plans. Results: To develop the non-uniform VMAT technique, a specific optimization model was successfully established. Both techniques generate high-quality plans with pass rate (>98%) with the 3mm, 3% criterion. HTV received dose of 84.1±0.75Gy and 84.1±1.2Gy from uniform and non-uniform VMAT plans, respectively. In terms of target coverage and dose homogeneity, there was no significant statistical difference between actual and experimental plans for each case. However, for critical organs at risk (OAR), including the parotids, oral cavity and larynx, dosimetric difference was significant with better dose sparing form experimental plans. Regarding plan implementation efficiency, the average machine time was 3.5 minutes for the actual VMAT plans and 3.7 minutes for the experimental nonuniform VMAT plans (p>0.050). Conclusion: Compared to conventional VMAT technique, the proposed non-uniform VMAT technique has the potential to produce efficient and safe treatment plans, especially in cases with complicated anatomical

  2. Nova laser alignment control system

    International Nuclear Information System (INIS)

    Van Arsdall, P.J.; Holloway, F.W.; McGuigan, D.L.; Shelton, R.T.

    1984-01-01

    Alignment of the Nova laser requires control of hundreds of optical components in the ten beam paths. Extensive application of computer technology makes daily alignment practical. The control system is designed in a manner which provides both centralized and local manual operator controls integrated with automatic closed loop alignment. Menudriven operator consoles using high resolution color graphics displays overlaid with transport touch panels allow laser personnel to interact efficiently with the computer system. Automatic alignment is accomplished by using image analysis techniques to determine beam references points from video images acquired along the laser chain. A major goal of the design is to contribute substantially to rapid experimental turnaround and consistent alignment results. This paper describes the computer-based control structure and the software methods developed for aligning this large laser system

  3. Response of human corneal fibroblasts on silk film surface patterns.

    Science.gov (United States)

    Gil, Eun Seok; Park, Sang-Hyug; Marchant, Jeff; Omenetto, Fiorenzo; Kaplan, David L

    2010-06-11

    Transparent, biodegradable, mechanically robust, and surface-patterned silk films were evaluated for the effect of surface morphology on human corneal fibroblast (hCF) cell proliferation, orientation, and ECM deposition and alignment. A series of dimensionally different surface groove patterns were prepared from optically graded glass substrates followed by casting poly(dimethylsiloxane) (PDMS) replica molds. The features on the patterned silk films showed an array of asymmetric triangles and displayed 37-342 nm depths and 445-3 582 nm widths. hCF DNA content on all patterned films were not significantly different from that on flat silk films after 4 d in culture. However, the depth and width of the grooves influenced cell alignment, while the depth differences affected cell orientation; overall, deeper and narrower grooves induced more hCF orientation. Over 14 d in culture, cell layers and actin filament organization demonstrated that confluent hCFs and their cytoskeletal filaments were oriented along the direction of the silk film patterned groove axis. Collagen type V and proteoglycans (decorin and biglycan), important markers of corneal stromal tissue, were highly expressed with alignment. Understanding corneal stromal fibroblast responses to surface features on a protein-based biomaterial applicable in vivo for corneal repair potential suggests options to improve corneal tissue mimics. Further, the approaches provide fundamental biomaterial designs useful for bioengineering oriented tissue layers, an endemic feature in most biological tissue structures that lead to critical tissue functions.

  4. Precision crystal alignment for high-resolution electron microscope imaging

    International Nuclear Information System (INIS)

    Wood, G.J.; Beeching, M.J.

    1990-01-01

    One of the more difficult tasks involved in obtaining quality high-resolution electron micrographs is the precise alignment of a specimen into the required zone. The current accepted procedure, which involves changing to diffraction mode and searching for symmetric point diffraction pattern, is insensitive to small amounts of misalignment and at best qualitative. On-line analysis of the fourier space representation of the image, both for determining and correcting crystal tilt, is investigated. 8 refs., 42 figs

  5. A recovery principle provides insight into auxin pattern control in the Arabidopsis root

    Science.gov (United States)

    Moore, Simon; Liu, Junli; Zhang, Xiaoxian; Lindsey, Keith

    2017-01-01

    Regulated auxin patterning provides a key mechanism for controlling root growth and development. We have developed a data-driven mechanistic model using realistic root geometry and formulated a principle to theoretically investigate quantitative auxin pattern recovery following auxin transport perturbation. This principle reveals that auxin patterning is potentially controlled by multiple combinations of interlinked levels and localisation of influx and efflux carriers. We demonstrate that (1) when efflux carriers maintain polarity but change levels, maintaining the same auxin pattern requires non-uniform and polar distribution of influx carriers; (2) the emergence of the same auxin pattern, from different levels of influx carriers with the same nonpolar localisation, requires simultaneous modulation of efflux carrier level and polarity; and (3) multiple patterns of influx and efflux carriers for maintaining an auxin pattern do not have spatially proportional correlation. This reveals that auxin pattern formation requires coordination between influx and efflux carriers. We further show that the model makes various predictions that can be experimentally validated. PMID:28220889

  6. The demagnetizing field of a non-uniform rectangular prism

    DEFF Research Database (Denmark)

    Smith, Anders; Nielsen, Kaspar Kirstein; Christensen, Dennis

    2010-01-01

    The effect of demagnetization on the magnetic properties of a rectangular ferromagnetic prism under non-uniform conditions is investigated. A numerical model for solving the spatially varying internal magnetic field is developed, validated and applied to relevant cases. The demagnetizing field...... is solved by an analytical calculation and the coupling between applied field, the demagnetization tensor field and spatially varying temperature is solved through iteration. We show that the demagnetizing field is of great importance in many cases and that it is necessary to take into account the non...

  7. Integer channels in nonuniform non-equilibrium 2D systems

    Science.gov (United States)

    Shikin, V.

    2018-01-01

    We discuss the non-equilibrium properties of integer channels in nonuniform 2D electron (hole) systems in the presence of a strong magnetic field. The results are applied to a qualitative explanation of the Corbino disk current-voltage characteristics (IVC) in the quantum Hall effect (QHE) regime. Special consideration is paid to the so-called "QHE breakdown" effect, which is readily observed in both the Hall bar and Corbino geometries of the tested cells. The QHE breakdown is especially evident in the Corbino samples, allowing for a more in-depth study of these effects.

  8. SPA: a probabilistic algorithm for spliced alignment.

    Directory of Open Access Journals (Sweden)

    2006-04-01

    Full Text Available Recent large-scale cDNA sequencing efforts show that elaborate patterns of splice variation are responsible for much of the proteome diversity in higher eukaryotes. To obtain an accurate account of the repertoire of splice variants, and to gain insight into the mechanisms of alternative splicing, it is essential that cDNAs are very accurately mapped to their respective genomes. Currently available algorithms for cDNA-to-genome alignment do not reach the necessary level of accuracy because they use ad hoc scoring models that cannot correctly trade off the likelihoods of various sequencing errors against the probabilities of different gene structures. Here we develop a Bayesian probabilistic approach to cDNA-to-genome alignment. Gene structures are assigned prior probabilities based on the lengths of their introns and exons, and based on the sequences at their splice boundaries. A likelihood model for sequencing errors takes into account the rates at which misincorporation, as well as insertions and deletions of different lengths, occurs during sequencing. The parameters of both the prior and likelihood model can be automatically estimated from a set of cDNAs, thus enabling our method to adapt itself to different organisms and experimental procedures. We implemented our method in a fast cDNA-to-genome alignment program, SPA, and applied it to the FANTOM3 dataset of over 100,000 full-length mouse cDNAs and a dataset of over 20,000 full-length human cDNAs. Comparison with the results of four other mapping programs shows that SPA produces alignments of significantly higher quality. In particular, the quality of the SPA alignments near splice boundaries and SPA's mapping of the 5' and 3' ends of the cDNAs are highly improved, allowing for more accurate identification of transcript starts and ends, and accurate identification of subtle splice variations. Finally, our splice boundary analysis on the human dataset suggests the existence of a novel non

  9. Precision alignment and calibration of optical systems using computer generated holograms

    Science.gov (United States)

    Coyle, Laura Elizabeth

    As techniques for manufacturing and metrology advance, optical systems are being designed with more complexity than ever before. Given these prescriptions, alignment and calibration can be a limiting factor in their final performance. Computer generated holograms (CGHs) have several unique properties that make them powerful tools for meeting these demanding tolerances. This work will present three novel methods for alignment and calibration of optical systems using computer generated holograms. Alignment methods using CGHs require that the optical wavefront created by the CGH be related to a mechanical datum to locate it space. An overview of existing methods is provided as background, then two new alignment methods are discussed in detail. In the first method, the CGH contact Ball Alignment Tool (CBAT) is used to align a ball or sphere mounted retroreflector (SMR) to a Fresnel zone plate pattern with micron level accuracy. The ball is bonded directly onto the CGH substrate and provides permanent, accurate registration between the optical wavefront and a mechanical reference to locate the CGH in space. A prototype CBAT was built and used to align and bond an SMR to a CGH. In the second method, CGH references are used to align axi-symmetric optics in four degrees of freedom with low uncertainty and real time feedback. The CGHs create simultaneous 3D optical references where the zero order reflection sets tilt and the first diffracted order sets centration. The flexibility of the CGH design can be used to accommodate a wide variety of optical systems and maximize sensitivity to misalignments. A 2-CGH prototype system was aligned multiplied times and the alignment uncertainty was quantified and compared to an error model. Finally, an enhanced calibration method is presented. It uses multiple perturbed measurements of a master sphere to improve the calibration of CGH-based Fizeau interferometers ultimately measuring aspheric test surfaces. The improvement in the

  10. Evolution of wave patterns and temperature field in shock-tube flow

    Science.gov (United States)

    Kiverin, A. D.; Yakovenko, I. S.

    2018-05-01

    The paper is devoted to the numerical analysis of wave patterns behind a shock wave propagating in a tube filled with a gaseous mixture. It is shown that the flow inside the boundary layer behind the shock wave is unstable, and the way the instability develops fully corresponds to the solution obtained for the boundary layer over a flat plate. Vortical perturbations inside the boundary layer determine the nonuniformity of the temperature field. In turn, exactly these nonuniformities define the way the ignition kernels arise in the combustible mixture after the reflected shock interaction with the boundary layer. In particular, the temperature nonuniformity determines the spatial limitations of probable ignition kernel position relative to the end wall and side walls of the tube. In the case of low-intensity incident shocks the ignition could start not farther than the point of first interaction between the reflected shock wave and roller vortices formed in the process of boundary layer development. Proposed physical mechanisms are formulated in general terms and can be used for interpretation of the experimental data in any systems with a delayed exothermal reaction start. It is also shown that contact surface thickening occurs due to its interaction with Tollmien-Schlichting waves. This conclusion is of importance for understanding the features of ignition in shock tubes operating in the over-tailored regime.

  11. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    G. Gomez and Y. Pakhotin

    2012-01-01

      A new track-based alignment for the DT chambers is ready for deployment: an offline tag has already been produced which will become part of the 52X Global Tag. This alignment was validated within the muon alignment group both at low and high momentum using a W/Z skim sample. It shows an improved mass resolution for pairs of stand-alone muons, improved curvature resolution at high momentum, and improved DT segment extrapolation residuals. The validation workflow for high-momentum muons used to depend solely on the “split cosmics” method, looking at the curvature difference between muon tracks reconstructed in the upper or lower half of CMS. The validation has now been extended to include energetic muons decaying from heavily boosted Zs: the di-muon invariant mass for global and stand-alone muons is reconstructed, and the invariant mass resolution is compared for different alignments. The main areas of development over the next few months will be preparing a new track-based C...

  12. How nonuniform contact profiles of T cell receptors modulate thymic selection outcomes

    Science.gov (United States)

    Chen, Hanrong; Chakraborty, Arup K.; Kardar, Mehran

    2018-03-01

    T cell receptors (TCRs) bind foreign or self-peptides attached to major histocompatibility complex (MHC) molecules, and the strength of this interaction determines T cell activation. Optimizing the ability of T cells to recognize a diversity of foreign peptides yet be tolerant of self-peptides is crucial for the adaptive immune system to properly function. This is achieved by selection of T cells in the thymus, where immature T cells expressing unique, stochastically generated TCRs interact with a large number of self-peptide-MHC; if a TCR does not bind strongly enough to any self-peptide-MHC, or too strongly with at least one self-peptide-MHC, the T cell dies. Past theoretical work cast thymic selection as an extreme value problem and characterized the statistical enrichment or depletion of amino acids in the postselection TCR repertoire, showing how T cells are selected to be able to specifically recognize peptides derived from diverse pathogens yet have limited self-reactivity. Here, we investigate how the diversity of the postselection TCR repertoire is modified when TCRs make nonuniform contacts with peptide-MHC. Specifically, we were motivated by recent experiments showing that amino acids at certain positions of a TCR sequence have large effects on thymic selection outcomes, and crystal structure data that reveal a nonuniform contact profile between a TCR and its peptide-MHC ligand. Using a representative TCR contact profile as an illustration, we show via simulations that the statistical enrichment or depletion of amino acids now varies by position according to the contact profile, and, importantly, it depends on the implementation of nonuniform contacts during thymic selection. We explain these nontrivial results analytically. Our study has implications for understanding the selection forces that shape the functionality of the postselection TCR repertoire.

  13. Current-induced nonuniform enhancement of sheet resistance in A r+ -irradiated SrTi O3

    Science.gov (United States)

    Roy, Debangsu; Frenkel, Yiftach; Davidovitch, Sagi; Persky, Eylon; Haham, Noam; Gabay, Marc; Kalisky, Beena; Klein, Lior

    2017-06-01

    The sheet resistance Rs of A r+ irradiated SrTi O3 in patterns with a length scale of several microns increases significantly below ˜40 K in connection with driving currents exceeding a certain threshold. The initial lower Rs is recovered upon warming with accelerated recovery around 70 and 160 K. Scanning superconducting quantum interference device microscopy shows local irreversible changes in the spatial distribution of the current with a length scale of several microns. We attribute the observed nonuniform enhancement of Rs to the attraction of the charged single-oxygen and dioxygen vacancies by the crystallographic domain boundaries in SrTi O3 . The boundaries, which are nearly ferroelectric below 40 K, are polarized by the local electrical field associated with the driven current and the clustered vacancies which suppress conductivity in their vicinity and yield a noticeable enhancement in the device resistance when the current path width is on the order of the boundary extension. The temperatures of accelerated conductivity recovery are associated with the energy barriers for the diffusion of the two types of vacancies.

  14. Detection of Uniform and Nonuniform Differential Item Functioning by Item-Focused Trees

    Science.gov (United States)

    Berger, Moritz; Tutz, Gerhard

    2016-01-01

    Detection of differential item functioning (DIF) by use of the logistic modeling approach has a long tradition. One big advantage of the approach is that it can be used to investigate nonuniform (NUDIF) as well as uniform DIF (UDIF). The classical approach allows one to detect DIF by distinguishing between multiple groups. We propose an…

  15. Effects of self-coupling and asymmetric output on metastable dynamical transient firing patterns in arrays of neurons with bidirectional inhibitory coupling.

    Science.gov (United States)

    Horikawa, Yo

    2016-04-01

    Metastable dynamical transient patterns in arrays of bidirectionally coupled neurons with self-coupling and asymmetric output were studied. First, an array of asymmetric sigmoidal neurons with symmetric inhibitory bidirectional coupling and self-coupling was considered and the bifurcations of its steady solutions were shown. Metastable dynamical transient spatially nonuniform states existed in the presence of a pair of spatially symmetric stable solutions as well as unstable spatially nonuniform solutions in a restricted range of the output gain of a neuron. The duration of the transients increased exponentially with the number of neurons up to the maximum number at which the spatially nonuniform steady solutions were stabilized. The range of the output gain for which they existed reduced as asymmetry in a sigmoidal output function of a neuron increased, while the existence range expanded as the strength of inhibitory self-coupling increased. Next, arrays of spiking neuron models with slow synaptic inhibitory bidirectional coupling and self-coupling were considered with computer simulation. In an array of Class 1 Hindmarsh-Rose type models, in which each neuron showed a graded firing rate, metastable dynamical transient firing patterns were observed in the presence of inhibitory self-coupling. This agreed with the condition for the existence of metastable dynamical transients in an array of sigmoidal neurons. In an array of Class 2 Bonhoeffer-van der Pol models, in which each neuron had a clear threshold between firing and resting, long-lasting transient firing patterns with bursting and irregular motion were observed. Copyright © 2016 Elsevier Ltd. All rights reserved.

  16. Analysis of effect on microdose of 10B nonuniform distribution in cellular

    International Nuclear Information System (INIS)

    Xie Qin; Geng Changran; Tang Xiaobin; Chen Da

    2012-01-01

    Boron neutron capture therapy (BNCT) is one of the effective way to treat malignant melanoma and head-neck cancer. The intercellular nonuniform distributions of 10 B in tumor cell impact the estimates of inactivation dose. The α-Li Version l.0 code was developed based on Monte-Carlo method to calculate the S values of cell induced by α and 7 Li particle which are the products of 10 B (n,a) 7 Li. The calculation included two types of cell size, eight kinds of energy of a particle and three kinds of source distributions. Differences between results of this code and an analytical algorithm of MIRD committee were within 1%. On this basis, a total of 3420 cases were calculated and analyzed with different kinds of nucleus radius, cell radius, and source launch position combination. Finally, cellular S values of 10 B (n,a) 7 Li calculated in this paper can be used to compute the excellent precision dose under 10 B compound nonuniform distribution in intercellular scale. (authors)

  17. Use of extremity insulation during whole body hyperthermia to reduce temperature nonuniformity

    International Nuclear Information System (INIS)

    Thrall, D.E.; Page, R.L.

    1987-01-01

    The author previously documented during whole body hyperthermia in dogs using a radiant heating device that temperature at superficial sites, including tibial bone marrow, falls below systemic arterial temperature during the plateau phase of heating. This may be due to direct heat loss to the environment. Sites where temperature is lower than systemic arterial temperature during the plateau phase may become sanctuary sites where tumor deposits are spared because they do not receive the prescribed thermal dose. In an attempt to decrease temperature nonuniformity and increase thermal dose delivered to such superficial sites, extremity insulation has been employed during whole body hyperthermia in dogs. The author measured temperature at cutaneous and subcutaneous sites and within tibial bone marrow in insulated and noninsulated extremities of dogs undergoing whole body hyperthermia in the radiant heating device. The author found that extremity insulation is effective in reducing extremity temperature nonuniformity. Specific results are presented. Extremity insulation may be necessary during whole body hyperthermia to assure that extremity tumor deposits receive a thermal dose similar to that prescribed for the entire body

  18. R3D Align web server for global nucleotide to nucleotide alignments of RNA 3D structures.

    Science.gov (United States)

    Rahrig, Ryan R; Petrov, Anton I; Leontis, Neocles B; Zirbel, Craig L

    2013-07-01

    The R3D Align web server provides online access to 'RNA 3D Align' (R3D Align), a method for producing accurate nucleotide-level structural alignments of RNA 3D structures. The web server provides a streamlined and intuitive interface, input data validation and output that is more extensive and easier to read and interpret than related servers. The R3D Align web server offers a unique Gallery of Featured Alignments, providing immediate access to pre-computed alignments of large RNA 3D structures, including all ribosomal RNAs, as well as guidance on effective use of the server and interpretation of the output. By accessing the non-redundant lists of RNA 3D structures provided by the Bowling Green State University RNA group, R3D Align connects users to structure files in the same equivalence class and the best-modeled representative structure from each group. The R3D Align web server is freely accessible at http://rna.bgsu.edu/r3dalign/.

  19. Aligned Layers of Silver Nano-Fibers

    Directory of Open Access Journals (Sweden)

    Andrii B. Golovin

    2012-02-01

    Full Text Available We describe a new dichroic polarizers made by ordering silver nano-fibers to aligned layers. The aligned layers consist of nano-fibers and self-assembled molecular aggregates of lyotropic liquid crystals. Unidirectional alignment of the layers is achieved by means of mechanical shearing. Aligned layers of silver nano-fibers are partially transparent to a linearly polarized electromagnetic radiation. The unidirectional alignment and density of the silver nano-fibers determine degree of polarization of transmitted light. The aligned layers of silver nano-fibers might be used in optics, microwave applications, and organic electronics.

  20. Nonlocal Poisson-Fermi double-layer models: Effects of nonuniform ion sizes on double-layer structure

    Science.gov (United States)

    Xie, Dexuan; Jiang, Yi

    2018-05-01

    This paper reports a nonuniform ionic size nonlocal Poisson-Fermi double-layer model (nuNPF) and a uniform ionic size nonlocal Poisson-Fermi double-layer model (uNPF) for an electrolyte mixture of multiple ionic species, variable voltages on electrodes, and variable induced charges on boundary segments. The finite element solvers of nuNPF and uNPF are developed and applied to typical double-layer tests defined on a rectangular box, a hollow sphere, and a hollow rectangle with a charged post. Numerical results show that nuNPF can significantly improve the quality of the ionic concentrations and electric fields generated from uNPF, implying that the effect of nonuniform ion sizes is a key consideration in modeling the double-layer structure.

  1. Pondermotive absorption of a short intense laser pulse in a non-uniform plasma

    Energy Technology Data Exchange (ETDEWEB)

    Andreev, A A; Platonov, K Yu [Inst. for Laser Physics, SC ` Vavilov State Optical Inst.` 12, Birzhevaya line, St Petersburg (Russian Federation); Tanaka, K A

    1998-03-01

    An analytical description of the pondermotive absorption mechanism at a short high intense laser pulse interaction with a strong inhomogeneous plasma is presented. The optimal conditions for the maximum of resonance absorption of laser pulse interaction with non-uniform plasma at normal incidence are founded. (author)

  2. Patterning titania with the conventional and modified micromolding in capillaries technique from sol–gel and dispersion solutions

    Directory of Open Access Journals (Sweden)

    Sajid Ullah Khan and Johan E ten Elshof

    2012-01-01

    Full Text Available We report TiO2 patterns obtained by a soft-lithographic technique called 'micromolding in capillaries' using sol–gel and dispersion solutions. A comparison between patterning with a sol–gel and dispersion solutions has been performed. The patterns obtained from sol–gel solutions showed good adhesion to the substrate and uniform shapes, but large shrinkage, whereas those obtained from dispersion solution had high solid content, but exhibited poor adhesion and non-uniform shapes. A fabrication method of a layer-by-layer structured pattern is also demonstrated. This type of pattern may find application in sensors, waveguides and other photonics elements. The occurrence of an undesirable residue layer, which hinders the fabrication of isolated patterns, is highlighted and a method of prevention is suggested.

  3. Alignment of CEBAF cryomodules

    International Nuclear Information System (INIS)

    Schneider, W.J.; Bisognano, J.J.; Fischer, J.

    1993-06-01

    CEBAF, the Continuous Electron Beam Accelerator Facility, when completed, will house a 4 GeV recirculating accelerator. Each of the accelerator's two linacs contains 160 superconducting radio frequency (SRF) 1497 MHz niobium cavities in 20 cryomodules. Alignments of the cavities within the cryomodule with respect to beam axis is critical to achieving the optimum accelerator performance. This paper discusses the rationale for the current specification on cavity mechanical alignment: 2 mrad (rms) applied to the 0.5 m active length cavities. We describe the tooling that was developed to achieve the tolerance at the time of cavity pair assembly, to preserve and integrate alignment during cryomodule assembly, and to translate alignment to appropriate installation in the beam line

  4. Cellular and Nuclear Alignment Analysis for Determining Epithelial Cell Chirality

    Science.gov (United States)

    Raymond, Michael J.; Ray, Poulomi; Kaur, Gurleen; Singh, Ajay V.; Wan, Leo Q.

    2015-01-01

    Left-right (LR) asymmetry is a biologically conserved property in living organisms that can be observed in the asymmetrical arrangement of organs and tissues and in tissue morphogenesis, such as the directional looping of the gastrointestinal tract and heart. The expression of LR asymmetry in embryonic tissues can be appreciated in biased cell alignment. Previously an in vitro chirality assay was reported by patterning multiple cells on microscale defined geometries and quantified the cell phenotype–dependent LR asymmetry, or cell chirality. However, morphology and chirality of individual cells on micropatterned surfaces has not been well characterized. Here, a Python-based algorithm was developed to identify and quantify immunofluorescence stained individual epithelial cells on multicellular patterns. This approach not only produces results similar to the image intensity gradient-based method reported previously, but also can capture properties of single cells such as area and aspect ratio. We also found that cell nuclei exhibited biased alignment. Around 35% cells were misaligned and were typically smaller and less elongated. This new imaging analysis approach is an effective tool for measuring single cell chirality inside multicellular structures and can potentially help unveil biophysical mechanisms underlying cellular chiral bias both in vitro and in vivo. PMID:26294010

  5. Microscopic image processing system for measuring nonuniform film thickness profiles: Image scanning ellipsometry

    International Nuclear Information System (INIS)

    Liu, A.H.; Plawsky, J.L.; Wayner, P.C. Jr.

    1993-01-01

    The long-term objective of this research program is to determine the stability and heat transfer characteristics of evaporating thin films. The current objective is to develop and use a microscopic image-processing system (IPS) which has two parts: an image analyzing interferometer (IAI) and an image scanning ellipsometer (ISE). The primary purpose of this paper is to present the basic concept of ISE, which is a novel technique to measure the two dimensional thickness profile of a non-uniform, thin film, from several nm up to several μm, in a steady state as well as in a transient state. It is a full-field imaging technique which can study every point on the surface simultaneously with high spatial resolution and thickness sensitivity, i.e., it can measure and map the 2-D film thickness profile. The ISE was tested by measuring the thickness profile and the refractive index of a nonuniform solid film

  6. Intradomain phase transitions in flexible block copolymers with self-aligning segments

    Science.gov (United States)

    Burke, Christopher J.; Grason, Gregory M.

    2018-05-01

    We study a model of flexible block copolymers (BCPs) in which there is an enlthalpic preference for orientational order, or local alignment, among like-block segments. We describe a generalization of the self-consistent field theory of flexible BCPs to include inter-segment orientational interactions via a Landau-de Gennes free energy associated with a polar or nematic order parameter for segments of one component of a diblock copolymer. We study the equilibrium states of this model numerically, using a pseudo-spectral approach to solve for chain conformation statistics in the presence of a self-consistent torque generated by inter-segment alignment forces. Applying this theory to the structure of lamellar domains composed of symmetric diblocks possessing a single block of "self-aligning" polar segments, we show the emergence of spatially complex segment order parameters (segment director fields) within a given lamellar domain. Because BCP phase separation gives rise to spatially inhomogeneous orientation order of segments even in the absence of explicit intra-segment aligning forces, the director fields of BCPs, as well as thermodynamics of lamellar domain formation, exhibit a highly non-linear dependence on both the inter-block segregation (χN) and the enthalpy of alignment (ɛ). Specifically, we predict the stability of new phases of lamellar order in which distinct regions of alignment coexist within the single mesodomain and spontaneously break the symmetries of the lamella (or smectic) pattern of composition in the melt via in-plane tilt of the director in the centers of the like-composition domains. We further show that, in analogy to Freedericksz transition confined nematics, the elastic costs to reorient segments within the domain, as described by the Frank elasticity of the director, increase the threshold value ɛ needed to induce this intra-domain phase transition.

  7. Effects of transverse temperature field nonuniformity on stress in silicon sheet growth

    Science.gov (United States)

    Mataga, P. A.; Hutchinson, J. W.; Chalmers, B.; Bell, R. O.; Kalejs, J. P.

    1987-01-01

    Stress and strain rate distributions are calculated using finite element analysis for steady-state growth of thin silicon sheet temperature nonuniformities imposed in the transverse (sheet width) dimension. Significant reductions in residual stress are predicted to occur for the case where the sheet edge is cooled relative to its center provided plastic deformation with high creep rates is present.

  8. Physician-Hospital Alignment in Orthopedic Surgery.

    Science.gov (United States)

    Bushnell, Brandon D

    2015-09-01

    The concept of "alignment" between physicians and hospitals is a popular buzzword in the age of health care reform. Despite their often tumultuous histories, physicians and hospitals find themselves under increasing pressures to work together toward common goals. However, effective alignment is more than just simple cooperation between parties. The process of achieving alignment does not have simple, universal steps. Alignment will differ based on individual situational factors and the type of specialty involved. Ultimately, however, there are principles that underlie the concept of alignment and should be a part of any physician-hospital alignment efforts. In orthopedic surgery, alignment involves the clinical, administrative, financial, and even personal aspects of a surgeon's practice. It must be based on the principles of financial interest, clinical authority, administrative participation, transparency, focus on the patient, and mutual necessity. Alignment can take on various forms as well, with popular models consisting of shared governance and comanagement, gainsharing, bundled payments, accountable care organizations, and other methods. As regulatory and financial pressures continue to motivate physicians and hospitals to develop alignment relationships, new and innovative methods of alignment will also appear. Existing models will mature and evolve, with individual variability based on local factors. However, certain trends seem to be appearing as time progresses and alignment relationships deepen, including regional and national collaboration, population management, and changes in the legal system. This article explores the history, principles, and specific methods of physician-hospital alignment and its critical importance for the future of health care delivery. Copyright 2015, SLACK Incorporated.

  9. Alignment of Healthy Dietary Patterns and Environmental Sustainability: A Systematic Review12

    Science.gov (United States)

    Nelson, Miriam E; Hamm, Michael W; Hu, Frank B; Abrams, Steven A; Griffin, Timothy S

    2016-01-01

    To support food security for current and future generations, there is a need to understand the relation between sustainable diets and the health of a population. In recent years, a number of studies have investigated and compared different dietary patterns to better understand which foods and eating patterns have less of an environmental impact while meeting nutritional needs and promoting health. This systematic review (SR) of population-level dietary patterns and food sustainability extends and updates the SR that was conducted by the 2015 US Dietary Guidelines Advisory Committee, an expert committee commissioned by the federal government to inform dietary guidance as it relates to the committee’s original conclusions. In the original SR, 15 studies met the criteria for inclusion; since then, an additional 8 studies have been identified and included. The relations between dietary intake patterns and both health and environmental outcomes were compared across studies, with methodologies that included modeling, life cycle assessment, and land use analysis. Across studies, consistent evidence indicated that a dietary pattern higher in plant-based foods (e.g., vegetables, fruits, legumes, seeds, nuts, whole grains) and lower in animal-based foods (especially red meat), as well as lower in total energy, is both healthier and associated with a lesser impact on the environment. This dietary pattern differs from current average consumption patterns in the United States. Our updated SR confirms and strengthens the conclusions of the original US Dietary Guidelines Advisory Committee SR, which found that adherence to several well-characterized dietary patterns, including vegetarian (with variations) diets, dietary guidelines–related diets, Mediterranean-style diets, the Dietary Approaches to Stop Hypertension (DASH) diet, and other sustainable diet scenarios, promotes greater health and has a less negative impact on the environment than current average dietary intakes

  10. Tunnel Face Stability and the Effectiveness of Advance Drainage Measures in Water-Bearing Ground of Non-uniform Permeability

    Science.gov (United States)

    Zingg, Sara; Anagnostou, Georg

    2018-01-01

    Non-uniform permeability may result in complex hydraulic head fields with potentially very high hydraulic gradients close to the tunnel face, which may be adverse for stability depending on the ground strength. Pore pressure relief by drainage measures in advance of the tunnel excavation improves stability, but the effectiveness of drainage boreholes may be low in the case of alternating aquifers and aquitards. This paper analyses the effects of hydraulic heterogeneity and advance drainage quantitatively by means of limit equilibrium computations that take account of the seepage forces acting upon the ground in the vicinity the tunnel face. The piezometric field is determined numerically by means of steady-state, three-dimensional seepage flow analyses considering the heterogeneous structure of the ground and a typical advance drainage scheme consisting of six axial boreholes drilled from the tunnel face. A suite of stability analyses was carried out covering a wide range of heterogeneity scales. The computational results show the effect of the orientation, thickness, location, number and permeability ratio of aquifers and aquitards and provide valuable indications about potentially critical situations, the effectiveness of advance drainage and the adequate arrangement of drainage boreholes. The paper shows that hydraulic heterogeneity results in highly variable face behaviour, even if the shear strength of the ground is constant along the alignment, but ground behaviour is considerably less variable in the presence of advance drainage measures.

  11. The CMS Silicon Tracker Alignment

    CERN Document Server

    Castello, R

    2008-01-01

    The alignment of the Strip and Pixel Tracker of the Compact Muon Solenoid experiment, with its large number of independent silicon sensors and its excellent spatial resolution, is a complex and challenging task. Besides high precision mounting, survey measurements and the Laser Alignment System, track-based alignment is needed to reach the envisaged precision.\\\\ Three different algorithms for track-based alignment were successfully tested on a sample of cosmic-ray data collected at the Tracker Integration Facility, where 15\\% of the Tracker was tested. These results, together with those coming from the CMS global run, will provide the basis for the full-scale alignment of the Tracker, which will be carried out with the first \\emph{p-p} collisions.

  12. Designs of Plasmonic Metamasks for Photopatterning Molecular Orientations in Liquid Crystals

    Directory of Open Access Journals (Sweden)

    Yubing Guo

    2016-12-01

    Full Text Available Aligning liquid crystal (LC molecules into spatially non-uniform orientation patterns is central to the functionalities of many emerging LC devices. Recently, we developed a new projection photopatterning technique by using plasmonic metamasks (PMMs, and demonstrated high-resolution and high-throughput patterning of molecular orientations into arbitrary patterns. Here we present comparisons between two different types of metamask designs: one based on curvilinear nanoslits in metal films; the other based on rectangular nanoapertures in metal films. By using numerical simulations and experimental studies, we show that the PMMs based on curvilinear nanoslits exhibit advantages in their broadband and high optical transmission, while face challenges in mask designing for arbitrary molecular orientations. In contrast, the PMMs based on nanoapertures, though limited in optical transmission, present the great advantage of allowing for patterning arbitrary molecular orientation fields.

  13. Research of non-uniform multiple hole straighteners for measuring flow rate

    International Nuclear Information System (INIS)

    Wen Duanzhong; Zhong Dezhen; Cai Zhuti

    1989-01-01

    Standard throttling flowmeters are widely used in process flow rate measurement. Enough upstream and downstream straight pipe are necessary for it. If not, the error will be increased. Mounting straightener is an effective way for solving this problem. Advantages of non-uniform multiple hole straighteners studied by authors are good results for straighting, simple in Structure, convenient for mounting and low cost. So it can be popularized in many applications

  14. Interpretation of UV radiometric measurements of spectrally non-uniform sources

    International Nuclear Information System (INIS)

    Murphy, P.J.; Gardner, D.G.

    1988-01-01

    Narrow bandpass UV radiometers are used in a variety of high-temperature measurement applications. Significant systematic errors, in the form of an apparent wavelength shift in the system response curve, may be introduced when interpreting data obtained from spectrally nonuniform sources. Theoretical calculations, using transmission curves from commercially available narrow bandpass filters, show that the apparent shift in the system spectral response is a function of temperature for a blackbody source. A brief comparison between the theoretical analysis and experimentaal data is presented

  15. Experimental study on the CHF in uniformly and non-uniformly heated vertical annuli

    Energy Technology Data Exchange (ETDEWEB)

    Chun, Se Young; Moon, Sang Ki; Chung, Heung June; Park, Jong Kuk; Kim, Bok Deuk; Youn, Young Jung; Chung, Moon Ki

    2001-09-01

    Up to now, KAERI has performed critical heat flux experiments in water under zero-flow and low-flow conditions using a RCS CHF loop facility with uniformly and non-uniformly heated vertical annulus. Since the existing CHF experiments were mainly performed under low-pressure conditions, we performed the CHF experiment to investigate the pressure effect on the CHF under zero-flow and low-flow conditions for a wide range of system pressures. Also, two vertical annuli with the same geometry have been used to investigate the axial heat flux distributions on the CHF. This report summarizes the experimental results and provides the CHF data that can be used for the development for CHF correlation and a thermal hydraulic analysis code. The CHF data have been collected for system pressures ranging from 0.57 to 15.15 MPa, mass flux 0 and from 200 to 650 kg/m2s, inlet subcooling from 75 to 360 kJ/kg and exit quality from 0.07 to 0.57. At low-flow conditions, the total number of data are 242 and 290 with uniformly heated- and non-uniformly heated test sections, respectively. 41 and 94 CHF data are generated with uniformly heated- and non-uniformly heated test sections, respectively, in zero-flow CHF experiments that are performed by blocking test section bottoms. The CHF experiment result shows that the effects of system pressure, mass flux and inlet subcooling are consistent with conventional understandings and similar to those for round tubes. The behavior of the CHF is relatively complex at low pressures. Also, the effects of axial heat flux profile are large at low-pressure conditions.

  16. Experimental study on the CHF in uniformly and non-uniformly heated vertical annuli

    International Nuclear Information System (INIS)

    Chun, Se Young; Moon, Sang Ki; Chung, Heung June; Park, Jong Kuk; Kim, Bok Deuk; Youn, Young Jung; Chung, Moon Ki

    2001-09-01

    Up to now, KAERI has performed critical heat flux experiments in water under zero-flow and low-flow conditions using a RCS CHF loop facility with uniformly and non-uniformly heated vertical annulus. Since the existing CHF experiments were mainly performed under low-pressure conditions, we performed the CHF experiment to investigate the pressure effect on the CHF under zero-flow and low-flow conditions for a wide range of system pressures. Also, two vertical annuli with the same geometry have been used to investigate the axial heat flux distributions on the CHF. This report summarizes the experimental results and provides the CHF data that can be used for the development for CHF correlation and a thermal hydraulic analysis code. The CHF data have been collected for system pressures ranging from 0.57 to 15.15 MPa, mass flux 0 and from 200 to 650 kg/m2s, inlet subcooling from 75 to 360 kJ/kg and exit quality from 0.07 to 0.57. At low-flow conditions, the total number of data are 242 and 290 with uniformly heated- and non-uniformly heated test sections, respectively. 41 and 94 CHF data are generated with uniformly heated- and non-uniformly heated test sections, respectively, in zero-flow CHF experiments that are performed by blocking test section bottoms. The CHF experiment result shows that the effects of system pressure, mass flux and inlet subcooling are consistent with conventional understandings and similar to those for round tubes. The behavior of the CHF is relatively complex at low pressures. Also, the effects of axial heat flux profile are large at low-pressure conditions

  17. Unified Alignment of Protein-Protein Interaction Networks.

    Science.gov (United States)

    Malod-Dognin, Noël; Ban, Kristina; Pržulj, Nataša

    2017-04-19

    Paralleling the increasing availability of protein-protein interaction (PPI) network data, several network alignment methods have been proposed. Network alignments have been used to uncover functionally conserved network parts and to transfer annotations. However, due to the computational intractability of the network alignment problem, aligners are heuristics providing divergent solutions and no consensus exists on a gold standard, or which scoring scheme should be used to evaluate them. We comprehensively evaluate the alignment scoring schemes and global network aligners on large scale PPI data and observe that three methods, HUBALIGN, L-GRAAL and NATALIE, regularly produce the most topologically and biologically coherent alignments. We study the collective behaviour of network aligners and observe that PPI networks are almost entirely aligned with a handful of aligners that we unify into a new tool, Ulign. Ulign enables complete alignment of two networks, which traditional global and local aligners fail to do. Also, multiple mappings of Ulign define biologically relevant soft clusterings of proteins in PPI networks, which may be used for refining the transfer of annotations across networks. Hence, PPI networks are already well investigated by current aligners, so to gain additional biological insights, a paradigm shift is needed. We propose such a shift come from aligning all available data types collectively rather than any particular data type in isolation from others.

  18. Impact of roof height non-uniformity on pollutant transport between a street canyon and intersections

    International Nuclear Information System (INIS)

    Nosek, Štěpán; Kukačka, Libor; Jurčáková, Klára; Kellnerová, Radka; Jaňour, Zbyněk

    2017-01-01

    This paper presents an extension of our previous wind-tunnel study (Nosek et al., 2016) in which we highlighted the need for investigation of the removal mechanisms of traffic pollution from all openings of a 3D street canyon. The extension represents the pollution flux (turbulent and advective) measurements at the lateral openings of three different 3D street canyons for the winds perpendicular and oblique to the along-canyon axis. The pollution was simulated by emitting a passive gas (ethane) from a homogeneous ground-level line source positioned along the centreline of the investigated street canyons. The street canyons were formed by courtyard-type buildings of two different regular urban-array models. The first model has a uniform building roof height, while the second model has a non-uniform roof height along each building's wall. The mean flow and concentration fields at the canyons' lateral openings confirm the findings of other studies that the buildings' roof-height variability at the intersections plays an important role in the dispersion of the traffic pollutants within the canyons. For the perpendicular wind, the non-uniform roof-height canyon appreciably removes or entrains the pollutant through its lateral openings, contrary to the uniform canyon, where the pollutant was removed primarily through the top. The analysis of the turbulent mass transport revealed that the coherent flow structures of the lateral momentum transport correlate with the ventilation processes at the lateral openings of all studied canyons. These flow structures coincide at the same areas and hence simultaneously transport the pollutant in opposite directions. - Highlights: • The pollutant transport strongly depends on the roof-height arrangement. • The non-uniform canyons also remove the pollutants through their lateral openings. • The higher the upstream wall, the more pollutant is removed through the top. • The lateral coherent structures correlate

  19. Precision alignment device

    Science.gov (United States)

    Jones, N.E.

    1988-03-10

    Apparatus for providing automatic alignment of beam devices having an associated structure for directing, collimating, focusing, reflecting, or otherwise modifying the main beam. A reference laser is attached to the structure enclosing the main beam producing apparatus and produces a reference beam substantially parallel to the main beam. Detector modules containing optical switching devices and optical detectors are positioned in the path of the reference beam and are effective to produce an electrical output indicative of the alignment of the main beam. This electrical output drives servomotor operated adjustment screws to adjust the position of elements of the structure associated with the main beam to maintain alignment of the main beam. 5 figs.

  20. Curricular Alignment: A Re-examination.

    Science.gov (United States)

    Anderson, Lorin W.

    2002-01-01

    Examines key differences among content coverage, opportunity to learn, and curriculum alignment, suggesting that the revised Taxonomy provides a framework for analyzing curriculum alignment and illustrating how the Taxonomy Table can be used to estimate curriculum alignment. The paper notes that the revised Taxonomy enables educators to probe…