WorldWideScience

Sample records for non-rigid registration method

  1. Constrained non-rigid registration for whole body image registration: method and validation

    Science.gov (United States)

    Li, Xia; Yankeelov, Thomas E.; Peterson, Todd E.; Gore, John C.; Dawant, Benoit M.

    2007-03-01

    3D intra- and inter-subject registration of image volumes is important for tasks that include measurements and quantification of temporal/longitudinal changes, atlas-based segmentation, deriving population averages, or voxel and tensor-based morphometry. A number of methods have been proposed to tackle this problem but few of them have focused on the problem of registering whole body image volumes acquired either from humans or small animals. These image volumes typically contain a large number of articulated structures, which makes registration more difficult than the registration of head images, to which the vast majority of registration algorithms have been applied. To solve this problem, we have previously proposed an approach, which initializes an intensity-based non-rigid registration algorithm with a point based registration technique [1, 2]. In this paper, we introduce new constraints into our non-rigid registration algorithm to prevent the bones from being deformed inaccurately. Results we have obtained show that the new constrained algorithm leads to better registration results than the previous one.

  2. EVolution: an edge-based variational method for non-rigid multi-modal image registration.

    Science.gov (United States)

    Denis de Senneville, B; Zachiu, C; Ries, M; Moonen, C

    2016-10-21

    Image registration is part of a large variety of medical applications including diagnosis, monitoring disease progression and/or treatment effectiveness and, more recently, therapy guidance. Such applications usually involve several imaging modalities such as ultrasound, computed tomography, positron emission tomography, x-ray or magnetic resonance imaging, either separately or combined. In the current work, we propose a non-rigid multi-modal registration method (namely EVolution: an edge-based variational method for non-rigid multi-modal image registration) that aims at maximizing edge alignment between the images being registered. The proposed algorithm requires only contrasts between physiological tissues, preferably present in both image modalities, and assumes deformable/elastic tissues. Given both is shown to be well suitable for non-rigid co-registration across different image types/contrasts (T1/T2) as well as different modalities (CT/MRI). This is achieved using a variational scheme that provides a fast algorithm with a low number of control parameters. Results obtained on an annotated CT data set were comparable to the ones provided by state-of-the-art multi-modal image registration algorithms, for all tested experimental conditions (image pre-filtering, image intensity variation, noise perturbation). Moreover, we demonstrate that, compared to existing approaches, our method possesses increased robustness to transient structures (i.e. that are only present in some of the images).

  3. EVolution: an edge-based variational method for non-rigid multi-modal image registration

    Science.gov (United States)

    de Senneville, B. Denis; Zachiu, C.; Ries, M.; Moonen, C.

    2016-10-01

    Image registration is part of a large variety of medical applications including diagnosis, monitoring disease progression and/or treatment effectiveness and, more recently, therapy guidance. Such applications usually involve several imaging modalities such as ultrasound, computed tomography, positron emission tomography, x-ray or magnetic resonance imaging, either separately or combined. In the current work, we propose a non-rigid multi-modal registration method (namely EVolution: an edge-based variational method for non-rigid multi-modal image registration) that aims at maximizing edge alignment between the images being registered. The proposed algorithm requires only contrasts between physiological tissues, preferably present in both image modalities, and assumes deformable/elastic tissues. Given both is shown to be well suitable for non-rigid co-registration across different image types/contrasts (T1/T2) as well as different modalities (CT/MRI). This is achieved using a variational scheme that provides a fast algorithm with a low number of control parameters. Results obtained on an annotated CT data set were comparable to the ones provided by state-of-the-art multi-modal image registration algorithms, for all tested experimental conditions (image pre-filtering, image intensity variation, noise perturbation). Moreover, we demonstrate that, compared to existing approaches, our method possesses increased robustness to transient structures (i.e. that are only present in some of the images).

  4. An accurate 3D shape context based non-rigid registration method for mouse whole-body skeleton registration

    Science.gov (United States)

    Xiao, Di; Zahra, David; Bourgeat, Pierrick; Berghofer, Paula; Acosta Tamayo, Oscar; Wimberley, Catriona; Gregoire, Marie C.; Salvado, Olivier

    2011-03-01

    Small animal image registration is challenging because of its joint structure, and posture and position difference in each acquisition without a standard scan protocol. In this paper, we face the issue of mouse whole-body skeleton registration from CT images. A novel method is developed for analyzing mouse hind-limb and fore-limb postures based on geodesic path descriptor and then registering the major skeletons and fore limb skeletons initially by thin-plate spline (TPS) transform based on the obtained geodesic paths and their enhanced correspondence fields. A target landmark correction method is proposed for improving the registration accuracy of the improved 3D shape context non-rigid registration method we previously proposed. A novel non-rigid registration framework, combining the skeleton posture analysis, geodesic path based initial alignment and 3D shape context model, is proposed for mouse whole-body skeleton registration. The performance of the proposed methods and framework was tested on 12 pairs of mouse whole-body skeletons. The experimental results demonstrated the flexibility, stability and accuracy of the proposed framework for automatic mouse whole body skeleton registration.

  5. Optimized imaging using non-rigid registration

    Energy Technology Data Exchange (ETDEWEB)

    Berkels, Benjamin, E-mail: berkels@aices.rwth-aachen.de [Interdisciplinary Mathematics Institute, 1523 Greene Street, University of South Carolina, Columbia, SC 29208 (United States); Binev, Peter, E-mail: binev@math.sc.edu [Interdisciplinary Mathematics Institute, 1523 Greene Street, University of South Carolina, Columbia, SC 29208 (United States); Department of Mathematics, 1523 Greene Street, University of South Carolina, Columbia, SC 29208 (United States); Blom, Douglas A., E-mail: doug.blom@sc.edu [NanoCenter, 1212 Greene Street, University of South Carolina, Columbia, SC 29208 (United States); Dahmen, Wolfgang, E-mail: dahmen@igpm.rwth-aachen.de [Interdisciplinary Mathematics Institute, 1523 Greene Street, University of South Carolina, Columbia, SC 29208 (United States); Institut für Geometrie und Praktische Mathematik, RWTH Aachen, Templergraben 55, 52056 Aachen (Germany); Sharpley, Robert C., E-mail: rcsharpley@gmail.com [Interdisciplinary Mathematics Institute, 1523 Greene Street, University of South Carolina, Columbia, SC 29208 (United States); Department of Mathematics, 1523 Greene Street, University of South Carolina, Columbia, SC 29208 (United States); Vogt, Thomas, E-mail: tvogt@mailbox.sc.edu [Interdisciplinary Mathematics Institute, 1523 Greene Street, University of South Carolina, Columbia, SC 29208 (United States); NanoCenter, 1212 Greene Street, University of South Carolina, Columbia, SC 29208 (United States); Department of Chemistry and Biochemistry, 631 Sumter Street, University of South Carolina, Columbia, SC 29208 (United States)

    2014-03-01

    The extraordinary improvements of modern imaging devices offer access to data with unprecedented information content. However, widely used image processing methodologies fall far short of exploiting the full breadth of information offered by numerous types of scanning probe, optical, and electron microscopies. In many applications, it is necessary to keep measurement intensities below a desired threshold. We propose a methodology for extracting an increased level of information by processing a series of data sets suffering, in particular, from high degree of spatial uncertainty caused by complex multiscale motion during the acquisition process. An important role is played by a non-rigid pixel-wise registration method that can cope with low signal-to-noise ratios. This is accompanied by formulating objective quality measures which replace human intervention and visual inspection in the processing chain. Scanning transmission electron microscopy of siliceous zeolite material exhibits the above-mentioned obstructions and therefore serves as orientation and a test of our procedures. - Highlights: • Developed a new process for extracting more information from a series of STEM images. • An objective non-rigid registration process copes with distortions. • Images of zeolite Y show retrieval of all information available from the data set. • Quantitative measures of registration quality were implemented. • Applicable to any serially acquired data, e.g. STM, AFM, STXM, etc.

  6. EVolution : an edge-based variational method for non-rigid multi-modal image registration

    NARCIS (Netherlands)

    Denis de Senneville, B; Zachiu, C; Ries, M; Moonen, C

    2016-01-01

    Image registration is part of a large variety of medical applications including diagnosis, monitoring disease progression and/or treatment effectiveness and, more recently, therapy guidance. Such applications usually involve several imaging modalities such as ultrasound, computed tomography,

  7. Non-rigid registration by geometry-constrained diffusion

    DEFF Research Database (Denmark)

    Andresen, Per Rønsholt; Nielsen, Mads

    2001-01-01

    Assume that only partial knowledge about a non-rigid registration is given: certain points, curves, or surfaces in one 3D image are known to map to certain points, curves, or surfaces in another 3D image. In trying to identify the non-rigid registration field, we face a generalized aperture problem...

  8. Non-rigid image registration using bone growth model

    DEFF Research Database (Denmark)

    Bro-Nielsen, Morten; Gramkow, Claus; Kreiborg, Sven

    1997-01-01

    Non-rigid registration has traditionally used physical models like elasticity and fluids. These models are very seldom valid models of the difference between the registered images. This paper presents a non-rigid registration algorithm, which uses a model of bone growth as a model of the change b...

  9. Non-rigid registration using higher-order mutual information

    Science.gov (United States)

    Rueckert, D.; Clarkson, M. J.; Hill, D. L. G.; Hawkes, D. J.

    2000-03-01

    Non-rigid registration of multi-modality images is an important tool for assessing temporal and structural changesbetween images. For rigid registration, voxel similarity measures like mutual information have been shown to alignimages from different modalities accurately and robustly. For non-rigid registration, mutual information can besensitive to local variations of intensity which in MR images may be caused by RF inhomogeneity. The reasonfor the sensitivity of mutual information towards intensity variations stems from the fact that mutual informationignores any spatial information. In this paper we propose an extension of the mutual information framework whichincorporates spatial information about higher-order image structure into the registration process and has the potentialto improve the accuracy and robustness of non-rigid registration in the presence of intensity variations. We haveapplied the non-rigid registration algorithm to a number of simulated MR brain images of a digital phantom whichhave been degraded by a simulated intensity shading and a known deformation. In addition, we have applied thealgorithm for the non-rigid registration of eight pre- and post-operative brain MR images which were acquired withan interventional MR scanner and therefore have substantial intensity shading due to RF field inhomogeneities. Inall cases the second-order estimate of mutual information leads to robust and accurate registration.

  10. Mouse whole-body organ mapping by non-rigid registration approach

    Science.gov (United States)

    Xiao, Di; Zahra, David; Bourgeat, Pierrick; Berghofer, Paula; Acosta Tamayo, Oscar; Green, Heather; Gregoire, Marie Claude; Salvado, Olivier

    2011-03-01

    Automatic small animal whole-body organ registration is challenging because of subject's joint structure, posture and position difference and loss of reference features. In this paper, an improved 3D shape context based non-rigid registration method is applied for mouse whole-body skeleton registration and lung registration. A geodesic path based non-rigid registration method is proposed for mouse torso skin registration. Based on the above registration methods, a novel non-rigid registration framework is proposed for mouse whole-body organ mapping from an atlas to new scanned CT data. A preliminary experiment was performed to test the method on lung and skin registration. A whole-body organ mapping was performed on three target data and the selected organs were compared with the manual outlining results. The robust of the method has been demonstrated.

  11. Survey of Non-Rigid Registration Tools in Medicine.

    Science.gov (United States)

    Keszei, András P; Berkels, Benjamin; Deserno, Thomas M

    2017-02-01

    We catalogue available software solutions for non-rigid image registration to support scientists in selecting suitable tools for specific medical registration purposes. Registration tools were identified using non-systematic search in Pubmed, Web of Science, IEEE Xplore® Digital Library, Google Scholar, and through references in identified sources (n = 22). Exclusions are due to unavailability or inappropriateness. The remaining (n = 18) tools were classified by (i) access and technology, (ii) interfaces and application, (iii) living community, (iv) supported file formats, and (v) types of registration methodologies emphasizing the similarity measures implemented. Out of the 18 tools, (i) 12 are open source, 8 are released under a permissive free license, which imposes the least restrictions on the use and further development of the tool, 8 provide graphical processing unit (GPU) support; (ii) 7 are built on software platforms, 5 were developed for brain image registration; (iii) 6 are under active development but only 3 have had their last update in 2015 or 2016; (iv) 16 support the Analyze format, while 7 file formats can be read with only one of the tools; and (v) 6 provide multiple registration methods and 6 provide landmark-based registration methods. Based on open source, licensing, GPU support, active community, several file formats, algorithms, and similarity measures, the tools Elastics and Plastimatch are chosen for the platform ITK and without platform requirements, respectively. Researchers in medical image analysis already have a large choice of registration tools freely available. However, the most recently published algorithms may not be included in the tools, yet.

  12. Non-rigid isometric ICP: A practical registration method for the analysis and compensation of form errors in production engineering

    KAUST Repository

    Sacharow, Alexei

    2011-12-01

    The unprecedented success of the iterative closest point (ICP) method for registration in geometry processing and related fields can be attributed to its efficiency, robustness, and wide spectrum of applications. Its use is however quite limited as soon as the objects to be registered arise from each other by a transformation significantly different from a Euclidean motion. We present a novel variant of ICP, tailored for the specific needs of production engineering, which registers a triangle mesh with a second surface model of arbitrary digital representation. Our method inherits most of ICP\\'s practical advantages but is capable of detecting medium-strength bendings i.e. isometric deformations. Initially, the algorithm assigns to all vertices in the source their closest point on the target mesh and then iteratively establishes isometry, a process which, very similar to ICP, requires intermediate re-projections. A NURBS-based technique for applying the resulting deformation to arbitrary instances of the source geometry, other than the very mesh used for correspondence estimation, is described before we present numerical results on synthetic and real data to underline the viability of our approach in comparison with others. © 2011 Elsevier Ltd. All rights reserved.

  13. MUTUAL INFORMATION BASED 3D NON-RIGID REGISTRATION OF CT/MR ABDOMEN IMAGES

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    A mutual information based 3D non-rigid registration approach was proposed for the registration of deformable CT/MR body abdomen images. The Parzen Windows Density Estimation (PWDE) method is adopted to calculate the mutual information between the two modals of CT and MRI abdomen images. By maximizing MI between the CT and MR volume images, the overlapping part of them reaches the biggest, which means that the two body images of CT and MR matches best to each other. Visible Human Project (VHP) Male abdomen CT and MRI Data are used as experimental data sets. The experimental results indicate that this approach of non-rigid 3D registration of CT/MR body abdominal images can be achieved effectively and automatically, without any prior processing procedures such as segmentation and feature extraction, but has a main drawback of very long computation time. Key words: medical image registration; multi-modality; mutual information; non-rigid; Parzen window density estimation

  14. Level set motion assisted non-rigid 3D image registration

    Science.gov (United States)

    Yang, Deshan; Deasy, Joseph O.; Low, Daniel A.; El Naqa, Issam

    2007-03-01

    Medical imaging applications of rigid and non-rigid elastic deformable image registration are undergoing wide scale development. Our approach determines image deformation maps through a hierarchical process, from global to local scales. Vemuri (2000) reported a registration method, based on levelset evolution theory, to morph an image along the motion gradient until it deforms to the reference image. We have applied this level set motion method as basis to iteratively compute the incremental motion fields and then we approximated the field using a higher-level affine and non-rigid motion model. In such a way, we combine sequentially the global affine motion, local affine motion and local non-rigid motion. Our method is fully automated, computationally efficient, and is able to detect large deformations if used together with multi-grid approaches, potentially yielding greater registration accuracy.

  15. [Research on non-rigid medical image registration algorithm based on SIFT feature extraction].

    Science.gov (United States)

    Wang, Anna; Lu, Dan; Wang, Zhe; Fang, Zhizhen

    2010-08-01

    In allusion to non-rigid registration of medical images, the paper gives a practical feature points matching algorithm--the image registration algorithm based on the scale-invariant features transform (Scale Invariant Feature Transform, SIFT). The algorithm makes use of the image features of translation, rotation and affine transformation invariance in scale space to extract the image feature points. Bidirectional matching algorithm is chosen to establish the matching relations between the images, so the accuracy of image registrations is improved. On this basis, affine transform is chosen to complement the non-rigid registration, and normalized mutual information measure and PSO optimization algorithm are also chosen to optimize the registration process. The experimental results show that the method can achieve better registration results than the method based on mutual information.

  16. SIFT and shape information incorporated into fluid model for non-rigid registration of ultrasound images.

    Science.gov (United States)

    Lu, Xuesong; Zhang, Su; Yang, Wei; Chen, Yazhu

    2010-11-01

    Non-rigid registration of ultrasound images takes an important role in image-guided radiotherapy and surgery. Intensity-based method is popular in non-rigid registration, but it is sensitive to intensity variations and has problems with matching small structure features for the existence of speckles in ultrasound images. In this paper, we develop a new algorithm integrating the intensity and feature of ultrasound images. Both global shape information and local keypoint information extracted by scale invariant feature transform (SIFT) are incorporated into intensity similarity measure as the body force of viscous fluid model in a Bayesian framework. Experiments were performed on synthetic and clinical ultrasound images of breast and kidney. It is shown that shape and keypoint information significantly improves fluid model for non-rigid registration, especially for alignment of small structure features in accuracy.

  17. Improving Feature-based Non-rigid Registration for Applications in Radiotherapy

    NARCIS (Netherlands)

    E.M. Vásquez Osorio (Eliana)

    2012-01-01

    textabstractThis thesis describes the improvements of a feature-based non-rigid registration method that were essential for its application in radiotherapy. In addition, this thesis presents three practical applications of the improved method: 1) quantification of anatomical changes in 3D for head a

  18. Hierarchical and successive approximate registration of the non-rigid medical image based on thin-plate splines

    Science.gov (United States)

    Hu, Jinyan; Li, Li; Yang, Yunfeng

    2017-06-01

    The hierarchical and successive approximate registration method of non-rigid medical image based on the thin-plate splines is proposed in the paper. There are two major novelties in the proposed method. First, the hierarchical registration based on Wavelet transform is used. The approximate image of Wavelet transform is selected as the registered object. Second, the successive approximation registration method is used to accomplish the non-rigid medical images registration, i.e. the local regions of the couple images are registered roughly based on the thin-plate splines, then, the current rough registration result is selected as the object to be registered in the following registration procedure. Experiments show that the proposed method is effective in the registration process of the non-rigid medical images.

  19. Non-Rigid Image Registration Algorithm Based on B-Splines Approximation

    Institute of Scientific and Technical Information of China (English)

    ZHANG Hongying; ZHANG Jiawan; SUN Jizhou; SUN Yigang

    2007-01-01

    An intensity-based non-rigid registration algorithm is discussed, which uses Gaussian smoothing to constrain the transformation to be smooth, and thus preserves the topology of images. In view of the insufficiency of the uniform Gaussian filtering of the deformation field, an automatic and accurate non-rigid image registration method based on B-splines approximation is proposed. The regularization strategy is adopted by using multi-level B-splines approximation to regularize the dis-placement fields in a coarse-to-fine manner. Moreover, it assigns the different weights to the estimated displacements according to their reliabilities. In this way, the level of regularity can be adapted locally. Experiments were performed on both synthetic and real medical images of brain, and the results show that the proposed method improves the registration accuracy and robustness.

  20. An information theoretic approach for non-rigid image registration using voxel class probabilities.

    Science.gov (United States)

    D'Agostino, Emiliano; Maes, Frederik; Vandermeulen, Dirk; Suetens, Paul

    2006-06-01

    We propose two information theoretic similarity measures that allow to incorporate tissue class information in non-rigid image registration. The first measure assumes that tissue class probabilities have been assigned to each of the images to be registered by prior segmentation of both of them. One image is then non-rigidly deformed to match the other such that the fuzzy overlap of corresponding voxel object labels becomes similar to the ideal case whereby the tissue probability maps of both images are identical. Image similarity is assessed during registration by the divergence between the ideal and actual joint class probability distributions of both images. A second registration measure is proposed that applies in case a segmentation is available for only one of the images, for instance an atlas image that is to be matched to a study image to guide the segmentation thereof. Intensities in one image are matched to the fuzzy class labels in the other image by minimizing the conditional entropy of the intensities in the first image given the class labels in the second image. We derive analytic expressions for the gradient of each measure with respect to individual voxel displacements to derive a force field that drives the registration process, which is regularized by a viscous fluid model. The performance of the class-based measures is evaluated in the context of non-rigid inter-subject registration and atlas-based segmentation of MR brain images and compared with maximization of mutual information using only intensity information. Our results demonstrate that incorporation of class information in the registration measure significantly improves the overlap between corresponding tissue classes after non-rigid matching. The methods proposed here open new perspectives for integrating segmentation and registration in a single process, whereby the output of one is used to guide the other.

  1. Detection and correction of inconsistency-based errors in non-rigid registration

    Science.gov (United States)

    Gass, Tobias; Szekely, Gabor; Goksel, Orcun

    2014-03-01

    In this paper we present a novel post-processing technique to detect and correct inconsistency-based errors in non-rigid registration. While deformable registration is ubiquitous in medical image computing, assessing its quality has yet been an open problem. We propose a method that predicts local registration errors of existing pairwise registrations between a set of images, while simultaneously estimating corrected registrations. In the solution the error is constrained to be small in areas of high post-registration image similarity, while local registrations are constrained to be consistent between direct and indirect registration paths. The latter is a critical property of an ideal registration process, and has been frequently used to asses the performance of registration algorithms. In our work, the consistency is used as a target criterion, for which we efficiently find a solution using a linear least-squares model on a coarse grid of registration control points. We show experimentally that the local errors estimated by our algorithm correlate strongly with true registration errors in experiments with known, dense ground-truth deformations. Additionally, the estimated corrected registrations consistently improve over the initial registrations in terms of average deformation error or TRE for different registration algorithms on both simulated and clinical data, independent of modality (MRI/CT), dimensionality (2D/3D) and employed primary registration method (demons/Markov-randomfield).

  2. Non-rigid registration of medical images based on estimation of deformation states

    Science.gov (United States)

    Marami, Bahram; Sirouspour, Shahin; Capson, David W.

    2014-11-01

    A unified framework for automatic non-rigid 3D-3D and 3D-2D registration of medical images with static and dynamic deformations is proposed in this paper. The problem of non-rigid image registration is approached as a classical state estimation problem using a generic deformation model for the soft tissue. The registration technique employs a dynamic linear elastic continuum mechanics model of the tissue deformation, which is discretized using the finite element method. In the proposed method, the registration is achieved through a Kalman-like filtering process, which incorporates information from the deformation model and a vector of observation prediction errors computed from an intensity-based similarity/distance metric between images. With this formulation, single and multiple-modality, 3D-3D and 3D-2D image registration problems can all be treated within the same framework. The performance of the proposed registration technique was evaluated in a number of different registration scenarios. First, 3D magnetic resonance (MR) images of uncompressed and compressed breast tissue were co-registered. 3D MR images of the uncompressed breast tissue were also registered to a sequence of simulated 2D interventional MR images of the compressed breast. Finally, the registration algorithm was employed to dynamically track a target sub-volume inside the breast tissue during the process of the biopsy needle insertion based on registering pre-insertion 3D MR images to a sequence of real-time simulated 2D interventional MR images. Registration results indicate that the proposed method can be effectively employed for the registration of medical images in image-guided procedures, such as breast biopsy in which the tissue undergoes static and dynamic deformations.

  3. PROBABILISTIC NON-RIGID REGISTRATION OF PROSTATE IMAGES: MODELING AND QUANTIFYING UNCERTAINTY

    Science.gov (United States)

    Risholm, Petter; Fedorov, Andriy; Pursley, Jennifer; Tuncali, Kemal; Cormack, Robert; Wells, William M.

    2012-01-01

    Registration of pre- to intra-procedural prostate images needs to handle the large changes in position and shape of the prostate caused by varying rectal filling and patient positioning. We describe a probabilistic method for non-rigid registration of prostate images which can quantify the most probable deformation as well as the uncertainty of the estimated deformation. The method is based on a biomechanical Finite Element model which treats the prostate as an elastic material. We use a Markov Chain Monte Carlo sampler to draw deformation configurations from the posterior distribution. In practice, we simultaneously estimate the boundary conditions (surface displacements) and the internal deformations of our biomechanical model. The proposed method was validated on a clinical MRI dataset with registration results comparable to previously published methods, but with the added benefit of also providing uncertainty estimates which may be important to take into account during prostate biopsy and brachytherapy procedures. PMID:22288004

  4. Multi-modal 2D-3D non-rigid registration

    Science.gov (United States)

    Prümmer, M.; Hornegger, J.; Pfister, M.; Dörfler, A.

    2006-03-01

    In this paper, we propose a multi-modal non-rigid 2D-3D registration technique. This method allows a non-rigid alignment of a patient pre-operatively computed tomography (CT) to few intra operatively acquired fluoroscopic X-ray images obtained with a C-arm system. This multi-modal approach is especially focused on the 3D alignment of high contrast reconstructed volumes with intra-interventional low contrast X-ray images in order to make use of up-to-date information for surgical guidance and other interventions. The key issue of non-rigid 2D-3D registration is how to define the distance measure between high contrast 3D data and low contrast 2D projections. In this work, we use algebraic reconstruction theory to handle this problem. We modify the Euler-Lagrange equation by introducing a new 3D force. This external force term is computed from the residual of the algebraic reconstruction procedures. In the multi-modal case we replace the residual between the digitally reconstructed radiographs (DRR) and observed X-ray images with a statistical based distance measure. We integrate the algebraic reconstruction technique into a variational registration framework, so that the 3D displacement field is driven to minimize the reconstruction distance between the volumetric data and its 2D projections using mutual information (MI). The benefits of this 2D-3D registration approach are its scalability in the number of used X-ray reference images and the proposed distance that can handle low contrast fluoroscopies as well. Experimental results are presented on both artificial phantom and 3D C-arm CT images.

  5. 3D non-rigid registration using surface and local salient features for transrectal ultrasound image-guided prostate biopsy

    Science.gov (United States)

    Yang, Xiaofeng; Akbari, Hamed; Halig, Luma; Fei, Baowei

    2011-03-01

    We present a 3D non-rigid registration algorithm for the potential use in combining PET/CT and transrectal ultrasound (TRUS) images for targeted prostate biopsy. Our registration is a hybrid approach that simultaneously optimizes the similarities from point-based registration and volume matching methods. The 3D registration is obtained by minimizing the distances of corresponding points at the surface and within the prostate and by maximizing the overlap ratio of the bladder neck on both images. The hybrid approach not only capture deformation at the prostate surface and internal landmarks but also the deformation at the bladder neck regions. The registration uses a soft assignment and deterministic annealing process. The correspondences are iteratively established in a fuzzy-to-deterministic approach. B-splines are used to generate a smooth non-rigid spatial transformation. In this study, we tested our registration with pre- and postbiopsy TRUS images of the same patients. Registration accuracy is evaluated using manual defined anatomic landmarks, i.e. calcification. The root-mean-squared (RMS) of the difference image between the reference and floating images was decreased by 62.6+/-9.1% after registration. The mean target registration error (TRE) was 0.88+/-0.16 mm, i.e. less than 3 voxels with a voxel size of 0.38×0.38×0.38 mm3 for all five patients. The experimental results demonstrate the robustness and accuracy of the 3D non-rigid registration algorithm.

  6. Non-rigid registration of medical images based on ordinal feature and manifold learning

    Science.gov (United States)

    Li, Qi; Liu, Jin; Zang, Bo

    2015-12-01

    With the rapid development of medical imaging technology, medical image research and application has become a research hotspot. This paper offers a solution to non-rigid registration of medical images based on ordinal feature (OF) and manifold learning. The structural features of medical images are extracted by combining ordinal features with local linear embedding (LLE) to improve the precision and speed of the registration algorithm. A physical model based on manifold learning and optimization search is constructed according to the complicated characteristics of non-rigid registration. The experimental results demonstrate the robustness and applicability of the proposed registration scheme.

  7. Non-rigid image registration under non-deterministic deformation bounds

    Science.gov (United States)

    Ge, Qian; Lokare, Namita; Lobaton, Edgar

    2015-01-01

    Image registration aims to identify the mapping between corresponding locations in an anatomic structure. Most traditional approaches solve this problem by minimizing some error metric. However, they do not quantify the uncertainty behind their estimates and the feasibility of other solutions. In this work, it is assumed that two images of the same anatomic structure are related via a Lipschitz non-rigid deformation (the registration map). An approach for identifying point correspondences with zero false-negative rate and high precision is introduced under this assumption. This methodology is then extended to registration of regions in an image which is posed as a graph matching problem with geometric constraints. The outcome of this approach is a homeomorphism with uncertainty bounds characterizing its accuracy over the entire image domain. The method is tested by applying deformation maps to the LPBA40 dataset.

  8. Non-Rigid Medical Image Registration with Joint Histogram Estimation Based on Mutual Information

    Institute of Scientific and Technical Information of China (English)

    LU Xuesong; ZHANG Su; SU He; CHEN Yazhu

    2007-01-01

    A mutual information-based non-rigid medical image registration algorithm is presented. An approximate function of Harming windowed sinc is used as kernel function of partial volume (PV)interpolation to estimate the joint histogram, which is the key to calculating the mutual information. And a new method is proposed to compute the gradient of mutual information with respect to themodel parameters. The transformation of object is modeled by a free-form deformation (FFD) based on B-splines. The experiments on 3D synthetic and real image data show that the algorithm can con-verge at the global optimum and restrain the emergency of local extreme.

  9. Infrared image non-rigid registration based on regional information entropy demons algorithm

    Science.gov (United States)

    Lu, Chaoliang; Ma, Lihua; Yu, Ming; Cui, Shumin; Wu, Qingrong

    2015-02-01

    Infrared imaging fault detection which is treated as an ideal, non-contact, non-destructive testing method is applied to the circuit board fault detection. Since Infrared images obtained by handheld infrared camera with wide-angle lens have both rigid and non-rigid deformations. To solve this problem, a new demons algorithm based on regional information entropy was proposed. The new method overcame the shortcomings of traditional demons algorithm that was sensitive to the intensity. First, the information entropy image was gotten by computing regional information entropy of the image. Then, the deformation between the two images was calculated that was the same as demons algorithm. Experimental results demonstrated that the proposed algorithm has better robustness in intensity inconsistent images registration compared with the traditional demons algorithm. Achieving accurate registration between intensity inconsistent infrared images provided strong support for the temperature contrast.

  10. Non-rigid registration by geometry-constrained diffusion

    DEFF Research Database (Denmark)

    Andresen, Per Rønsholt; Nielsen, Mads

    1999-01-01

    are not given. We will advocate the viewpoint that the aperture and the 3D interpolation problem may be solved simultaneously by finding the simplest displacement field. This is obtained by a geometry-constrained diffusion which yields the simplest displacement field in a precise sense. The point registration...

  11. Effects of reusing baseline volumes of interest by applying (non-rigid image registration on positron emission tomography response assessments.

    Directory of Open Access Journals (Sweden)

    Floris H P van Velden

    Full Text Available OBJECTIVES: Reusing baseline volumes of interest (VOI by applying non-rigid and to some extent (local rigid image registration showed good test-retest variability similar to delineating VOI on both scans individually. The aim of the present study was to compare response assessments and classifications based on various types of image registration with those based on (semi-automatic tumour delineation. METHODS: Baseline (n = 13, early (n = 12 and late (n = 9 response (after one and three cycles of treatment, respectively whole body [(18F]fluoro-2-deoxy-D-glucose positron emission tomography/computed tomography (PET/CT scans were acquired in subjects with advanced gastrointestinal malignancies. Lesions were identified for early and late response scans. VOI were drawn independently on all scans using an adaptive 50% threshold method (A50. In addition, various types of (non-rigid image registration were applied to PET and/or CT images, after which baseline VOI were projected onto response scans. Response was classified using PET Response Criteria in Solid Tumors for maximum standardized uptake value (SUV(max, average SUV (SUV(mean, peak SUV (SUV(peak, metabolically active tumour volume (MATV, total lesion glycolysis (TLG and the area under a cumulative SUV-volume histogram curve (AUC. RESULTS: Non-rigid PET-based registration and non-rigid CT-based registration followed by non-rigid PET-based registration (CTPET did not show differences in response classifications compared to A50 for SUV(max and SUV(peak, however, differences were observed for MATV, SUV(mean, TLG and AUC. For the latter, these registrations demonstrated a poorer performance for small lung lesions (<2.8 ml, whereas A50 showed a poorer performance when another area with high uptake was close to the target lesion. All methods were affected by lesions with very heterogeneous tracer uptake. CONCLUSIONS: Non-rigid PET- and CTPET-based image registrations may be used to classify response

  12. Non-rigid registration of breast surfaces using the laplace and diffusion equations

    Directory of Open Access Journals (Sweden)

    Ou Jao J

    2010-02-01

    Full Text Available Abstract A semi-automated, non-rigid breast surface registration method is presented that involves solving the Laplace or diffusion equations over undeformed and deformed breast surfaces. The resulting potential energy fields and isocontours are used to establish surface correspondence. This novel surface-based method, which does not require intensity images, anatomical landmarks, or fiducials, is compared to a gold standard of thin-plate spline (TPS interpolation. Realistic finite element simulations of breast compression and further testing against a tissue-mimicking phantom demonstrate that this method is capable of registering surfaces experiencing 6 - 36 mm compression to within a mean error of 0.5 - 5.7 mm.

  13. Robust non-rigid point set registration using student's-t mixture model.

    Directory of Open Access Journals (Sweden)

    Zhiyong Zhou

    Full Text Available The Student's-t mixture model, which is heavily tailed and more robust than the Gaussian mixture model, has recently received great attention on image processing. In this paper, we propose a robust non-rigid point set registration algorithm using the Student's-t mixture model. Specifically, first, we consider the alignment of two point sets as a probability density estimation problem and treat one point set as Student's-t mixture model centroids. Then, we fit the Student's-t mixture model centroids to the other point set which is treated as data. Finally, we get the closed-form solutions of registration parameters, leading to a computationally efficient registration algorithm. The proposed algorithm is especially effective for addressing the non-rigid point set registration problem when significant amounts of noise and outliers are present. Moreover, less registration parameters have to be set manually for our algorithm compared to the popular coherent points drift (CPD algorithm. We have compared our algorithm with other state-of-the-art registration algorithms on both 2D and 3D data with noise and outliers, where our non-rigid registration algorithm showed accurate results and outperformed the other algorithms.

  14. Bayesian Characterization of Uncertainty in Intra-Subject Non-Rigid Registration

    Science.gov (United States)

    Risholm, Petter; Janoos, Firdaus; Norton, Isaiah; Golby, Alex J.; Wells, William M.

    2013-01-01

    In settings where high-level inferences are made based on registered image data, the registration uncertainty can contain important information. In this article, we propose a Bayesian non-rigid registration framework where conventional dissimilarity and regularization energies can be included in the likelihood and the prior distribution on deformations respectively through the use of Boltzmann’s distribution. The posterior distribution is characterized using Markov Chain Monte Carlo (MCMC) methods with the effect of the Boltzmann temperature hyper-parameters marginalized under broad uninformative hyper-prior distributions. The MCMC chain permits estimation of the most likely deformation as well as the associated uncertainty. On synthetic examples, we demonstrate the ability of the method to identify the maximum a posteriori estimate and the associated posterior uncertainty, and demonstrate that the posterior distribution can be non-Gaussian. Additionally, results from registering clinical data acquired during neurosurgery for resection of brain tumor are provided; we compare the method to single transformation results from a deterministic optimizer and introduce methods that summarize the high-dimensional uncertainty. At the site of resection, the registration uncertainty increases and the marginal distribution on deformations is shown to be multi-modal. PMID:23602919

  15. Efficient convex optimization approach to 3D non-rigid MR-TRUS registration.

    Science.gov (United States)

    Sun, Yue; Yuan, Jing; Rajchl, Martin; Qiu, Wu; Romagnoli, Cesare; Fenster, Aaron

    2013-01-01

    In this study, we propose an efficient non-rigid MR-TRUS deformable registration method to improve the accuracy of targeting suspicious locations during a 3D ultrasound (US) guided prostate biopsy. The proposed deformable registration approach employs the multi-channel modality independent neighbourhood descriptor (MIND) as the local similarity feature across the two modalities of MR and TRUS, and a novel and efficient duality-based convex optimization based algorithmic scheme is introduced to extract the deformations which align the two MIND descriptors. The registration accuracy was evaluated using 10 patient images by measuring the TRE of manually identified corresponding intrinsic fiducials in the whole gland and peripheral zone, and performance metrics (DSC, MAD and MAXD) for the apex, mid-gland and base of the prostate were also calculated by comparing two manually segmented prostate surfaces in the registered 3D MR and TRUS images. Experimental results show that the proposed method yielded an overall mean TRE of 1.74 mm, which is favorably comparable to a clinical requirement for an error of less than 2.5 mm.

  16. Robust feature estimation by non-rigid hierarchical image registration and its application in disparity measurement

    Science.gov (United States)

    Badshah, Amir; Choudhry, Aadil Jaleel; Ullah, Shan

    2017-03-01

    Industries are moving towards automation in order to increase productivity and ensure quality. Variety of electronic and electromagnetic systems are being employed to assist human operator in fast and accurate quality inspection of products. Majority of these systems are equipped with cameras and rely on diverse image processing algorithms. Information is lost in 2D image, therefore acquiring accurate 3D data from 2D images is an open issue. FAST, SURF and SIFT are well-known spatial domain techniques for features extraction and henceforth image registration to find correspondence between images. The efficiency of these methods is measured in terms of the number of perfect matches found. A novel fast and robust technique for stereo-image processing is proposed. It is based on non-rigid registration using modified normalized phase correlation. The proposed method registers two images in hierarchical fashion using quad-tree structure. The registration process works through global to local level resulting in robust matches even in presence of blur and noise. The computed matches can further be utilized to determine disparity and depth for industrial product inspection. The same can be used in driver assistance systems. The preliminary tests on Middlebury dataset produced satisfactory results. The execution time for a 413 x 370 stereo-pair is 500ms approximately on a low cost DSP.

  17. Improving supervised classification accuracy using non-rigid multimodal image registration: detecting prostate cancer

    Science.gov (United States)

    Chappelow, Jonathan; Viswanath, Satish; Monaco, James; Rosen, Mark; Tomaszewski, John; Feldman, Michael; Madabhushi, Anant

    2008-03-01

    Computer-aided diagnosis (CAD) systems for the detection of cancer in medical images require precise labeling of training data. For magnetic resonance (MR) imaging (MRI) of the prostate, training labels define the spatial extent of prostate cancer (CaP); the most common source for these labels is expert segmentations. When ancillary data such as whole mount histology (WMH) sections, which provide the gold standard for cancer ground truth, are available, the manual labeling of CaP can be improved by referencing WMH. However, manual segmentation is error prone, time consuming and not reproducible. Therefore, we present the use of multimodal image registration to automatically and accurately transcribe CaP from histology onto MRI following alignment of the two modalities, in order to improve the quality of training data and hence classifier performance. We quantitatively demonstrate the superiority of this registration-based methodology by comparing its results to the manual CaP annotation of expert radiologists. Five supervised CAD classifiers were trained using the labels for CaP extent on MRI obtained by the expert and 4 different registration techniques. Two of the registration methods were affi;ne schemes; one based on maximization of mutual information (MI) and the other method that we previously developed, Combined Feature Ensemble Mutual Information (COFEMI), which incorporates high-order statistical features for robust multimodal registration. Two non-rigid schemes were obtained by succeeding the two affine registration methods with an elastic deformation step using thin-plate splines (TPS). In the absence of definitive ground truth for CaP extent on MRI, classifier accuracy was evaluated against 7 ground truth surrogates obtained by different combinations of the expert and registration segmentations. For 26 multimodal MRI-WMH image pairs, all four registration methods produced a higher area under the receiver operating characteristic curve compared to that

  18. Topology preserving non-rigid image registration using time-varying elasticity model for MRI brain volumes.

    Science.gov (United States)

    Ahmad, Sahar; Khan, Muhammad Faisal

    2015-12-01

    In this paper, we present a new non-rigid image registration method that imposes a topology preservation constraint on the deformation. We propose to incorporate the time varying elasticity model into the deformable image matching procedure and constrain the Jacobian determinant of the transformation over the entire image domain. The motion of elastic bodies is governed by a hyperbolic partial differential equation, generally termed as elastodynamics wave equation, which we propose to use as a deformation model. We carried out clinical image registration experiments on 3D magnetic resonance brain scans from IBSR database. The results of the proposed registration approach in terms of Kappa index and relative overlap computed over the subcortical structures were compared against the existing topology preserving non-rigid image registration methods and non topology preserving variant of our proposed registration scheme. The Jacobian determinant maps obtained with our proposed registration method were qualitatively and quantitatively analyzed. The results demonstrated that the proposed scheme provides good registration accuracy with smooth transformations, thereby guaranteeing the preservation of topology.

  19. GPU accelerated non-rigid registration for the evaluation of cardiac function.

    Science.gov (United States)

    Li, Bo; Young, Alistair A; Cowan, Brett R

    2008-01-01

    We present a method for the fast and efficient tracking of motion in cardiac magnetic resonance (CMR) cines. A GPU accelerated Levenberg-Marquardt non-linear least squares optimization procedure for finite element non-rigid registration was implemented on an NVIDIA graphics card using the OpenGL environment. Points were tracked from frame to frame using forward and backward incremental registration. The inner (endocardial) and outer (epicardial) boarders of the heart were tracked in six short axis cines with approximately 25 frames through the cardiac cycle in 36 patients with vascular disease. Contours placed by two independent expert observers using a semi-automatic ventricular analysis program (CIM version 4.6) were used as the gold standard. The method took 0.5 seconds per frame, and the maximum Hausdorff errors were less than 2 mm on average which was of the same order as the expert inter-observer error. In conclusion, GPU accelerated Levenberg-Marquardt non-linear optimization enables fast and accurate tracking of cardiac motion in CMR images.

  20. High-throughput mouse phenotyping using non-rigid registration and robust principal component analysis

    Science.gov (United States)

    Xie, Zhongliu; Kitamoto, Asanobu; Tamura, Masaru; Shiroishi, Toshihiko; Gillies, Duncan

    2016-03-01

    Intensive international efforts are underway towards phenotyping the mouse genome, by knocking out each of its ≍25,000 genes one-by-one for comparative study. With vast amounts of data to analyze, the traditional method using time-consuming histological examination is clearly impractical, leading to an overwhelming demand for some high-throughput phenotyping framework, especially with the employment of biomedical image informatics to efficiently identify phenotypes concerning morphological abnormality. Existing work has either excessively relied on volumetric analytics which is insensitive to phenotypes associated with no severe volume variations, or tailored for specific defects and thus fails to serve a general phenotyping purpose. Furthermore, the prevailing requirement of an atlas for image segmentation in contrast to its limited availability further complicates the issue in practice. In this paper we propose a high-throughput general-purpose phenotyping framework that is able to efficiently perform batch-wise anomaly detection without prior knowledge of the phenotype and the need for atlas-based segmentation. Anomaly detection is centered on the combined use of group-wise non-rigid image registration and robust principal component analysis (RPCA) for feature extraction and decomposition.

  1. Non-rigid point set registration of curves: registration of the superficial vessel centerlines of the brain

    Science.gov (United States)

    Marreiros, Filipe M. M.; Wang, Chunliang; Rossitti, Sandro; Smedby, Örjan

    2016-03-01

    In this study we present a non-rigid point set registration for 3D curves (composed by 3D set of points). The method was evaluated in the task of registration of 3D superficial vessels of the brain where it was used to match vessel centerline points. It consists of a combination of the Coherent Point Drift (CPD) and the Thin-Plate Spline (TPS) semilandmarks. The CPD is used to perform the initial matching of centerline 3D points, while the semilandmark method iteratively relaxes/slides the points. For the evaluation, a Magnetic Resonance Angiography (MRA) dataset was used. Deformations were applied to the extracted vessels centerlines to simulate brain bulging and sinking, using a TPS deformation where a few control points were manipulated to obtain the desired transformation (T1). Once the correspondences are known, the corresponding points are used to define a new TPS deformation(T2). The errors are measured in the deformed space, by transforming the original points using T1 and T2 and measuring the distance between them. To simulate cases where the deformed vessel data is incomplete, parts of the reference vessels were cut and then deformed. Furthermore, anisotropic normally distributed noise was added. The results show that the error estimates (root mean square error and mean error) are below 1 mm, even in the presence of noise and incomplete data.

  2. Non-rigid registration of 3D point clouds under isometric deformation

    Science.gov (United States)

    Ge, Xuming

    2016-11-01

    An algorithm for pairwise non-rigid registration of 3D point clouds is presented in the specific context of isometric deformations. The critical step is registration of point clouds at different epochs captured from an isometric deformation surface within overlapping regions. Based on characteristics invariant under isometric deformation, a variant of the four-point congruent sets algorithm is applied to generate correspondences between two deformed point clouds, and subsequently a RANSAC framework is used to complete cluster extraction in preparation for global optimal alignment. Examples are presented and the results compared with existing approaches to demonstrate the two main contributions of the technique: a success rate for generating true correspondences of 90% and a root mean square error after final registration of 2-3 mm.

  3. Combination of automatic non-rigid and landmark based registration: the best of both worlds

    Science.gov (United States)

    Fischer, Bernd; Modersitzki, Jan

    2003-05-01

    Automatic, parameter-free, and non-rigid registration schemes are known to be valuable tools in various (medical) image processing applications. Typically, these approaches aim to match intensity patterns in each scan by minimizing an appropriate distance measure. The outcome of an automatic registration procedure in general matches the target image quite good on the average. However, it may be inaccurate for specific, important locations as for example anatomical landmarks. On the other hand, landmark based registration techniques are designed to accurately match user specified landmarks. A drawback of landmark based registration is that the intensities of the images are completely neglected. Consequently, the registration result away from the landmarks may be very poor. Here we propose a framework for novel registration techniques which are capable to combine automatic and landmark driven approaches in order to benefit from the advantages of both strategies. We also propose a general, mathematical treatment of this framework and a particular implementation. The procedure computes a displacement field which is guaranteed to produce a one-to-one match between given landmarks and at the smae time minimizes an intensity based measure for the remaining parts of the images. The properties of the new scheme are demonstrated for a variety of numerical example. It is worthwhile noticing, that we not only present a new approach. Instead, we propose a general framework for a variety of different approaches. The choice of the main building blocks, the distance measure and the smoothness constraint, is essentially free.

  4. Contour propagation in MRI-guided radiotherapy treatment of cervical cancer: the accuracy of rigid, non-rigid and semi-automatic registrations

    Science.gov (United States)

    van der Put, R. W.; Kerkhof, E. M.; Raaymakers, B. W.; Jürgenliemk-Schulz, I. M.; Lagendijk, J. J. W.

    2009-12-01

    External beam radiation treatment for patients with cervical cancer is hindered by the relatively large motion of the target volume. A hybrid MRI-accelerator system makes it possible to acquire online MR images during treatment in order to correct for motion and deformation. To fully benefit from such a system, online delineation of the target volumes is necessary. The aim of this study is to investigate the accuracy of rigid, non-rigid and semi-automatic registrations of MR images for interfractional contour propagation in patients with cervical cancer. Registration using mutual information was performed on both bony anatomy and soft tissue. A B-spline transform was used for the non-rigid method. Semi-automatic registration was implemented with a point set registration algorithm on a small set of manual landmarks. Online registration was simulated by application of each method to four weekly MRI scans for each of 33 cervical cancer patients. Evaluation was performed by distance analysis with respect to manual delineations. The results show that soft-tissue registration significantly (P treatment of cervical cancer, online MRI imaging will allow target localization based on soft tissue visualization, which provides a significantly higher accuracy than localization based on bony anatomy. The use of limited user input to guide the registration increases overall accuracy. Additional non-rigid registration further reduces the propagation error and negates errors caused by small observer variations.

  5. Automatic mitral annulus tracking in volumetric ultrasound using non-rigid image registration.

    Science.gov (United States)

    De Veene, Henri; Bertrand, Philippe B; Popovic, Natasa; Vandervoort, Pieter M; Claus, Piet; De Beule, Matthieu; Heyde, Brecht

    2015-01-01

    Analysis of mitral annular dynamics plays an important role in the diagnosis and selection of optimal valve repair strategies, but remains cumbersome and time-consuming if performed manually. In this paper we propose non-rigid image registration to automatically track the annulus in 3D ultrasound images for both normal and pathological valves, and compare the performance against manual tracing. Relevant clinical properties such as annular area, circumference and excursion could be extracted reliably by the tracking algorithm. The root-mean-square error, calculated as the difference between the manually traced landmarks (18 in total) and the automatic tracking, was 1.96 ± 0.46 mm over 10 valves (5 healthy and 5 diseased) which is within the clinically acceptable error range.

  6. Inverse consistent non-rigid image registration based on robust point set matching.

    Science.gov (United States)

    Yang, Xuan; Pei, Jihong; Shi, Jingli

    2014-01-01

    Robust point matching (RPM) has been extensively used in non-rigid registration of images to robustly register two sets of image points. However, except for the location at control points, RPM cannot estimate the consistent correspondence between two images because RPM is a unidirectional image matching approach. Therefore, it is an important issue to make an improvement in image registration based on RPM. In our work, a consistent image registration approach based on the point sets matching is proposed to incorporate the property of inverse consistency and improve registration accuracy. Instead of only estimating the forward transformation between the source point sets and the target point sets in state-of-the-art RPM algorithms, the forward and backward transformations between two point sets are estimated concurrently in our algorithm. The inverse consistency constraints are introduced to the cost function of RPM and the fuzzy correspondences between two point sets are estimated based on both the forward and backward transformations simultaneously. A modified consistent landmark thin-plate spline registration is discussed in detail to find the forward and backward transformations during the optimization of RPM. The similarity of image content is also incorporated into point matching in order to improve image matching. Synthetic data sets, medical images are employed to demonstrate and validate the performance of our approach. The inverse consistent errors of our algorithm are smaller than RPM. Especially, the topology of transformations is preserved well for our algorithm for the large deformation between point sets. Moreover, the distance errors of our algorithm are similar to that of RPM, and they maintain a downward trend as whole, which demonstrates the convergence of our algorithm. The registration errors for image registrations are evaluated also. Again, our algorithm achieves the lower registration errors in same iteration number. The determinant of the

  7. Estimation of myocardial strain from non-rigid registration and highly accelerated cine CMR.

    Science.gov (United States)

    Langton, Jonathan E N; Lam, Hoi-Ieng; Cowan, Brett R; Occleshaw, Christopher J; Gabriel, Ruvin; Lowe, Boris; Lydiard, Suzanne; Greiser, Andreas; Schmidt, Michaela; Young, Alistair A

    2017-01-01

    Sparsely sampled cardiac cine accelerated acquisitions show promise for faster evaluation of left-ventricular function. Myocardial strain estimation using image feature tracking methods is also becoming widespread. However, it is not known whether highly accelerated acquisitions also provide reliable feature tracking strain estimates. Twenty patients and twenty healthy volunteers were imaged with conventional 14-beat/slice cine acquisition (STD), 4× accelerated 4-beat/slice acquisition with iterative reconstruction (R4), and a 9.2× accelerated 2-beat/slice real-time acquisition with sparse sampling and iterative reconstruction (R9.2). Radial and circumferential strains were calculated using non-rigid registration in the mid-ventricle short-axis slice and inter-observer errors were evaluated. Consistency was assessed using intra-class correlation coefficients (ICC) and bias with Bland-Altman analysis. Peak circumferential strain magnitude was highly consistent between STD and R4 and R9.2 (ICC = 0.876 and 0.884, respectively). Average bias was -1.7 ± 2.0 %, p < 0.001, for R4 and -2.7 ± 1.9 %, p < 0.001 for R9.2. Peak radial strain was also highly consistent (ICC = 0.829 and 0.785, respectively), with average bias -11.2 ± 18.4 %, p < 0.001, for R4 and -15.0 ± 21.2 %, p < 0.001 for R9.2. STD circumferential strain could be predicted by linear regression from R9.2 with an R(2) of 0.82 and a root mean squared error of 1.8 %. Similarly, radial strain could be predicted with an R(2) of 0.67 and a root mean squared error of 21.3 %. Inter-observer errors were not significantly different between methods, except for peak circumferential strain R9.2 (1.1 ± 1.9 %) versus STD (0.3 ± 1.0 %), p = 0.011. Although small systematic differences were observed in strain, these were highly consistent with standard acquisitions, suggesting that accelerated myocardial strain is feasible and reliable in patients who

  8. Non-rigid contour-to-pixel registration of photographic and quantitative light-induced fluorescence imaging of decalcified teeth

    Science.gov (United States)

    Berkels, Benjamin; Deserno, Thomas; Ehrlich, Eva E.; Fritz, Ulrike B.; Sirazitdinova, Ekaterina; Tatano, Rosalia

    2016-03-01

    Quantitative light-induced fluorescence (QLF) is widely used to assess the damage of a tooth due to decalcification. In digital photographs, decalcification appears as white spot lesions, i.e. white spots on the tooth surface. We propose a novel multimodal registration approach for the matching of digital photographs and QLF images of decalcified teeth. The registration is based on the idea of contour-to-pixel matching. Here, the curve, which represents the shape of the tooth, is extracted from the QLF image using a contour segmentation by binarization and morphological processing. This curve is aligned to the photo with a non-rigid variational registration approach. Thus, the registration problem is formulated as minimization problem with an objective function that consists of a data term and a regularizer for the deformation. To construct the data term, the photo is pointwise classified into tooth and non-tooth regions. Then, the signed distance function of the tooth region allows to measure the mismatch between curve and photo. As regularizer a higher order, linear elastic prior is used. The resulting minimization problem is solved numerically using bilinear Finite Elements for the spatial discretization and the Gauss-Newton algorithm. The evaluation is based on 150 image pairs, where an average of 5 teeth have been captured from 32 subjects. All registrations have been confirmed correctly by a dental expert. The contour-to-pixel methods can directly be used in 3D for surface-to-voxel tasks.

  9. Research on non rigid registration algorithm of DCE-MRI based on mutual information and optical flow

    Science.gov (United States)

    Yu, Shihua; Wang, Rui; Wang, Kaiyu; Xi, Mengmeng; Zheng, Jiashuo; Liu, Hui

    2015-07-01

    Image matching plays a very important role in the field of medical image, while the two image registration methods based on the mutual information and the optical flow are very effective. The experimental results show that the two methods have their prominent advantages. The method based on mutual information is good for the overall displacement, while the method based on optical flow is very sensitive to small deformation. In the breast DCE-MRI images studied in this paper, there is not only overall deformation caused by the patient, but also non rigid small deformation caused by respiratory deformation. In view of the above situation, the single-image registration algorithms cannot meet the actual needs of complex situations. After a comprehensive analysis to the advantages and disadvantages of these two methods, this paper proposes a registration algorithm of combining mutual information with optical flow field, and applies subtraction images of the reference image and the floating image as the main criterion to evaluate the registration effect, at the same time, applies the mutual information between image sequence values as auxiliary criterion. With the test of the example, this algorithm has obtained a better accuracy and reliability in breast DCE-MRI image sequences.

  10. 3D prostate MR-TRUS non-rigid registration using dual optimization with volume-preserving constraint

    Science.gov (United States)

    Qiu, Wu; Yuan, Jing; Fenster, Aaron

    2016-03-01

    We introduce an efficient and novel convex optimization-based approach to the challenging non-rigid registration of 3D prostate magnetic resonance (MR) and transrectal ultrasound (TRUS) images, which incorporates a new volume preserving constraint to essentially improve the accuracy of targeting suspicious regions during the 3D TRUS guided prostate biopsy. Especially, we propose a fast sequential convex optimization scheme to efficiently minimize the employed highly nonlinear image fidelity function using the robust multi-channel modality independent neighborhood descriptor (MIND) across the two modalities of MR and TRUS. The registration accuracy was evaluated using 10 patient images by calculating the target registration error (TRE) using manually identified corresponding intrinsic fiducials in the whole prostate gland. We also compared the MR and TRUS manually segmented prostate surfaces in the registered images in terms of the Dice similarity coefficient (DSC), mean absolute surface distance (MAD), and maximum absolute surface distance (MAXD). Experimental results showed that the proposed method with the introduced volume-preserving prior significantly improves the registration accuracy comparing to the method without the volume-preserving constraint, by yielding an overall mean TRE of 2:0+/-0:7 mm, and an average DSC of 86:5+/-3:5%, MAD of 1:4+/-0:6 mm and MAXD of 6:5+/-3:5 mm.

  11. Non-rigid registration and KLT filter to improve SNR and CNR in GRE-EPI myocardial perfusion imaging.

    Science.gov (United States)

    Mihai, Georgeta; Ding, Yu; Xue, Hui; Chung, Yiu-Cho; Rajagopalan, Sanjay; Guehring, Jens; Simonetti, Orlando P

    2012-12-01

    The purpose of the study was to evaluate the effect of motion compensation by non-rigid registration combined with the Karhunen-Loeve Transform (KLT) filter on the signal to noise (SNR) and contrast-to-noise ratio (CNR) of hybrid gradient-echo echoplanar (GRE-EPI) first-pass myocardial perfusion imaging. Twenty one consecutive first-pass adenosine stress perfusion MR data sets interpreted positive for ischemia or infarction were processed by non-rigid Registration followed by KLT filtering. SNR and CNR were measured in abnormal and normal myocardium in unfiltered and KLT filtered images following non-rigid registration to compensate for respiratory and other motions. Image artifacts introduced by filtering in registered and nonregistered images were evaluated by two observers. There was a statistically significant increase in both SNR and CNR between normal and abnormal myocardium with KLT filtering (mean SNR increased by 62.18% ± 21.05% and mean CNR increased by 58.84% ± 18.06%; p = 0.01). Motion correction prior to KLT filtering reduced significantly the occurrence of filter induced artifacts (KLT only-artifacts in 42 out of 55 image series vs. registered plus KLT-artifacts in 3 out of 55 image series). In conclusion the combination of non- rigid registration and KLT filtering was shown to increase the SNR and CNR of GRE-EPI perfusion images. Subjective evaluation of image artifacts revealed that prior motion compensation significantly reduced the artifacts introduced by the KLT filtering process.

  12. Two Phase Non-Rigid Multi-Modal Image Registration Using Weber Local Descriptor-Based Similarity Metrics and Normalized Mutual Information

    Science.gov (United States)

    Yang, Feng; Ding, Mingyue; Zhang, Xuming; Wu, Yi; Hu, Jiani

    2013-01-01

    Non-rigid multi-modal image registration plays an important role in medical image processing and analysis. Existing image registration methods based on similarity metrics such as mutual information (MI) and sum of squared differences (SSD) cannot achieve either high registration accuracy or high registration efficiency. To address this problem, we propose a novel two phase non-rigid multi-modal image registration method by combining Weber local descriptor (WLD) based similarity metrics with the normalized mutual information (NMI) using the diffeomorphic free-form deformation (FFD) model. The first phase aims at recovering the large deformation component using the WLD based non-local SSD (wldNSSD) or weighted structural similarity (wldWSSIM). Based on the output of the former phase, the second phase is focused on getting accurate transformation parameters related to the small deformation using the NMI. Extensive experiments on T1, T2 and PD weighted MR images demonstrate that the proposed wldNSSD-NMI or wldWSSIM-NMI method outperforms the registration methods based on the NMI, the conditional mutual information (CMI), the SSD on entropy images (ESSD) and the ESSD-NMI in terms of registration accuracy and computation efficiency. PMID:23765270

  13. Non-rigid Registration for Large Sets of Microscopic Images on Graphics Processors.

    Science.gov (United States)

    Ruiz, Antonio; Ujaldon, Manuel; Cooper, Lee; Huang, Kun

    2009-04-01

    Microscopic imaging is an important tool for characterizing tissue morphology and pathology. 3D reconstruction and visualization of large sample tissue structure requires registration of large sets of high-resolution images. However, the scale of this problem presents a challenge for automatic registration methods. In this paper we present a novel method for efficient automatic registration using graphics processing units (GPUs) and parallel programming. Comparing a C++ CPU implementation with Compute Unified Device Architecture (CUDA) libraries and pthreads running on GPU we achieve a speed-up factor of up to 4.11× with a single GPU and 6.68× with a GPU pair. We present execution times for a benchmark composed of two sets of large-scale images: mouse placenta (16K × 16K pixels) and breast cancer tumors (23K × 62K pixels). It takes more than 12 hours for the genetic case in C++ to register a typical sample composed of 500 consecutive slides, which was reduced to less than 2 hours using two GPUs, in addition to a very promising scalability for extending those gains easily on a large number of GPUs in a distributed system.

  14. Non-rigid registration of a 3D ultrasound and a MR image data set of the female pelvic floor using a biomechanical model

    Directory of Open Access Journals (Sweden)

    Rexilius Jan

    2005-03-01

    Full Text Available Abstract Background The visual combination of different modalities is essential for many medical imaging applications in the field of Computer-Assisted medical Diagnosis (CAD to enhance the clinical information content. Clinically, incontinence is a diagnosis with high clinical prevalence and morbidity rate. The search for a method to identify risk patients and to control the success of operations is still a challenging task. The conjunction of magnetic resonance (MR and 3D ultrasound (US image data sets could lead to a new clinical visual representation of the morphology as we show with corresponding data sets of the female anal canal with this paper. Methods We present a feasibility study for a non-rigid registration technique based on a biomechanical model for MR and US image data sets of the female anal canal as a base for a new innovative clinical visual representation. Results It is shown in this case study that the internal and external sphincter region could be registered elastically and the registration partially corrects the compression induced by the ultrasound transducer, so the MR data set showing the native anatomy is used as a frame for the US data set showing the same region with higher resolution but distorted by the transducer Conclusion The morphology is of special interest in the assessment of anal incontinence and the non-rigid registration of normal clinical MR and US image data sets is a new field of the adaptation of this method incorporating the advantages of both technologies.

  15. Robust CPD Algorithm for Non-Rigid Point Set Registration Based on Structure Information.

    Science.gov (United States)

    Peng, Lei; Li, Guangyao; Xiao, Mang; Xie, Li

    2016-01-01

    Recently, the Coherent Point Drift (CPD) algorithm has become a very popular and efficient method for point set registration. However, this method does not take into consideration the neighborhood structure information of points to find the correspondence and requires a manual assignment of the outlier ratio. Therefore, CPD is not robust for large degrees of degradation. In this paper, an improved method is proposed to overcome the two limitations of CPD. A structure descriptor, such as shape context, is used to perform the auxiliary calculation of the correspondence, and the proportion of each GMM component is adjusted by the similarity. The outlier ratio is formulated in the EM framework so that it can be automatically calculated and optimized iteratively. The experimental results on both synthetic data and real data demonstrate that the proposed method described here is more robust to deformation, noise, occlusion, and outliers than CPD and other state-of-the-art algorithms.

  16. 融合SIFT的B样条红外图像非刚性配准%B-spline non-rigid registration algorithm for infrared image based on SIFT

    Institute of Scientific and Technical Information of China (English)

    卢朝梁; 马丽华; 陈豪; 张薇; 于敏; 崔树民

    2014-01-01

    手持式广角镜头红外热像仪所拍摄的不同时刻红外图像具有刚性形变和非刚性形变,传统图像配准算法很难同时矫正刚性形变与非刚性形变,针对该问题,提出一种融合SIFT的B样条配准算法。首先在待配准图像中建立控制网格,其次运用SIFT算法寻找待配准与基准图像间的匹配点对,剔除错误匹配点对并计算出待配准图像与基准图像间的刚性变换参数,接着对控制点进行刚性变换,最后以局部强度和为测度函数,运用B样条非刚性配准算法对广角镜头引起图像的非线性进行矫正。对比实验结果表明,本文算法具有很高配准精度,能够满足实际工程精度要求。%Infrared images obtained by handheld infrared camera with wide-angle lens have rigid and non-rigid deform-ations. Tradition image registration algorithm is difficult to correct the rigid and non-rigid deformations. To solve this problem,B-spline non-rigid registration algorithm based on SIFT is proposed. At first,the control mesh is created in the input image. Then,matching points between input image and template image are found by SIFT algorithm. The rigid transformation parameters are calculated after ignoring the incorrect matching points. Next,the control points are transformed by rigid transformation parameters. Finally,the sum of pattern intensity is used as measurement,and the nonlinear transformation of the image that is caused by wide-angle lens is corrected by B-spline non-rigid registration algorithm. The results of comparison show that the new method has better registration accuracy and it also can meet the requirements of practical engineering accuracy.

  17. Personalized x-ray reconstruction of the proximal femur via a non-rigid 2D-3D registration

    Science.gov (United States)

    Yu, Weimin; Zysset, Philippe; Zheng, Guoyan

    2015-03-01

    In this paper we present a new approach for a personalized X-ray reconstruction of the proximal femur via a non-rigid registration of a 3D volumetric template to 2D calibrated C-arm images. The 2D-3D registration is done with a hierarchical two-stage strategy: the global scaled rigid registration stage followed by a regularized deformable b-spline registration stage. In both stages, a set of control points with uniform spacing are placed over the domain of the 3D volumetric template and the registrations are driven by computing updated positions of these control points, which then allows to accurately register the 3D volumetric template to the reference space of the C-arm images. Comprehensive experiments on simulated images, on images of cadaveric femurs and on clinical datasets are designed and conducted to evaluate the performance of the proposed approach. Quantitative and qualitative evaluation results are given, which demonstrate the efficacy of the present approach.

  18. Non-rigid image registration to reduce beam-induced blurring of cryo-electron microscopy images

    Energy Technology Data Exchange (ETDEWEB)

    Karimi Nejadasl, Fatemeh; Karuppasamy, Manikandan [Leiden University Medical Center, PO Box 9600, 2300RC Leiden (Netherlands); Newman, Emily R.; McGeehan, John E. [University of Portsmouth, Portsmouth PO1 2DY (United Kingdom); Ravelli, Raimond B. G., E-mail: raimond.nl@gmail.com [Leiden University Medical Center, PO Box 9600, 2300RC Leiden (Netherlands)

    2013-01-01

    Cryo-electron microscopy images of vitrified large macromolecular complexes can become blurred due to beam-induced specimen alterations. Exposure series are examined, and rigid and non-rigid image registration schemes are applied to reduce such blurring. The typical dose used to record cryo-electron microscopy images from vitrified biological specimens is so high that radiation-induced structural alterations are bound to occur during data acquisition. Integration of all scattered electrons into one image can lead to significant blurring, particularly if the data are collected from an unsupported thin layer of ice suspended over the holes of a support film. Here, the dose has been fractioned and exposure series have been acquired in order to study beam-induced specimen movements under low dose conditions, prior to bubbling. Gold particles were added to the protein sample as fiducial markers. These were automatically localized and tracked throughout the exposure series and showed correlated motions within small patches, with larger amplitudes of motion vectors at the start of a series compared with the end of each series. A non-rigid scheme was used to register all images within each exposure series, using natural neighbor interpolation with the gold particles as anchor points. The procedure increases the contrast and resolution of the examined macromolecules.

  19. A new technique for noise reduction at coronary CT angiography with multi-phase data-averaging and non-rigid image registration

    Energy Technology Data Exchange (ETDEWEB)

    Tatsugami, Fuminari; Higaki, Toru; Nakamura, Yuko; Yamagami, Takuji; Date, Shuji; Awai, Kazuo [Hiroshima University, Department of Diagnostic Radiology, Minami-ku, Hiroshima (Japan); Fujioka, Chikako; Kiguchi, Masao [Hiroshima University, Department of Radiology, Minami-ku, Hiroshima (Japan); Kihara, Yasuki [Hiroshima University, Department of Cardiovascular Medicine, Minami-ku, Hiroshima (Japan)

    2015-01-15

    To investigate the feasibility of a newly developed noise reduction technique at coronary CT angiography (CTA) that uses multi-phase data-averaging and non-rigid image registration. Sixty-five patients underwent coronary CTA with prospective ECG-triggering. The range of the phase window was set at 70-80 % of the R-R interval. First, three sets of consecutive volume data at 70 %, 75 % and 80 % of the R-R interval were prepared. Second, we applied non-rigid registration to align the 70 % and 80 % images to the 75 % image. Finally, we performed weighted averaging of the three images and generated a de-noised image. The image noise and contrast-to-noise ratio (CNR) in the proximal coronary arteries between the conventional 75 % and the de-noised images were compared. Two radiologists evaluated the image quality using a 5-point scale (1, poor; 5, excellent). On de-noised images, mean image noise was significantly lower than on conventional 75 % images (18.3 HU ± 2.6 vs. 23.0 HU ± 3.3, P < 0.01) and the CNR was significantly higher (P < 0.01). The mean image quality score for conventional 75 % and de-noised images was 3.9 and 4.4, respectively (P < 0.01). Our method reduces image noise and improves image quality at coronary CTA. (orig.)

  20. Validation of TMJ osteoarthritis synthetic defect database via non-rigid registration

    Science.gov (United States)

    Paniagua, Beatriz; Pera, Juliette; Budin, Francois; Gomes, Liliane; Styner, Martin; Lucia, Cevidanes; Nguyen, Tung

    2015-03-01

    Temporomandibular joint (TMJ) disorders are a group of conditions that cause pain and dysfunction in the jaw joint and the muscles controlling jaw movement. However, diagnosis and treatment of these conditions remain controversial. To date, there is no single sign, symptom, or test that can clearly diagnose early stages of osteoarthritis (OA). Instead, the diagnosis is based on a consideration of several factors, including radiological evaluation. The current radiological diagnosis scores of TMJ pathology are subject to misdiagnosis. We believe these scores are limited by the acquisition procedures, such as oblique cuts of the CT and head positioning errors, and can lead to incorrect diagnoses of flattening of the head of the condyle, formation of osteophytes, or condylar pitting. This study consists of creating and validating a methodological framework to simulate defects in CBCT scans of known location and size, in order to create synthetic TMJ OA database. User-generated defects were created using a non-rigid deformation protocol in CBCT. All segmentation evaluation, surface distances and linear distances from the user-generated to the simulated defects showed our methodological framework to be very precise and within a voxel (0.5 mm) of magnitude. A TMJ OA synthetic database will be created next, and evaluated by expert radiologists, and this will serve to evaluate how sensitive the current radiological diagnosis tools are.

  1. Evaluation of Registration Methods on Thoracic CT

    DEFF Research Database (Denmark)

    Murphy, K.; van Ginneken, B.; Reinhardt, J.;

    2011-01-01

    EMPIRE10 (Evaluation of Methods for Pulmonary Image REgistration 2010) is a public platform for fair and meaningful comparison of registration algorithms which are applied to a database of intra-patient thoracic CT image pairs. Evaluation of non-rigid registration techniques is a non trivial task...

  2. PCA and level set based non-rigid image registration for MRI and Paxinos-Watson atlas of rat brain

    Science.gov (United States)

    Cai, Chao; Liu, Ailing; Ding, Mingyue; Zhou, Chengping

    2007-12-01

    Image registration provides the ability to geometrically align one dataset with another. It is a basic task in a great variety of biomedical imaging applications. This paper introduced a novel three-dimensional registration method for Magnetic Resonance Image (MRI) and Paxinos-Watson Atlas of rat brain. For the purpose of adapting to a large range and non-linear deformation between MRI and atlas in higher registration accuracy, based on the segmentation of rat brain, we chose the principle components analysis (PCA) automatically performing the linear registration, and then, a level set based nonlinear registration correcting some small distortions. We implemented this registration method in a rat brain 3D reconstruction and analysis system. Experiments have demonstrated that this method can be successfully applied to registering the low resolution and noise affection MRI with Paxinos-Watson Atlas of rat brain.

  3. Myocardial strain assessment by cine cardiac magnetic resonance imaging using non-rigid registration.

    Science.gov (United States)

    Tsadok, Yossi; Friedman, Zvi; Haluska, Brian A; Hoffmann, Rainer; Adam, Dan

    2016-05-01

    To evaluate a novel post-processing method for assessment of longitudinal mid-myocardial strain in standard cine cardiac magnetic resonance (CMR) imaging sequences. Cine CMR imaging and tagged cardiac magnetic resonance imaging (TMRI) were performed in 15 patients with acute myocardial infarction (AMI) and 15 healthy volunteers served as control group. A second group of 37 post-AMI patients underwent both cine CMR and late gadolinium enhancement (LGE) CMR exams. Speckle tracking echocardiography (STE) was performed in 36 of these patients. Cine CMR, TMRI and STE were analyzed to obtain longitudinal strain. LGE-CMR datasets were analyzed to evaluate scar extent. Comparison of peak systolic strain (PSS) measured from CMR and TMRI yielded a strong correlation (r=0.86, pcine CMR data. The method was found to be highly correlated with strain measurements obtained by TMRI and STE. This tool allows accurate discrimination between different transmurality states of myocardial infarction. Copyright © 2015 Elsevier Inc. All rights reserved.

  4. Automatic generation of boundary conditions using Demons non-rigid image registration for use in 3D modality-independent elastography

    Science.gov (United States)

    Pheiffer, Thomas S.; Ou, Jao J.; Miga, Michael I.

    2010-02-01

    Modality-independent elastography (MIE) is a method of elastography that reconstructs the elastic properties of tissue using images acquired under different loading conditions and a biomechanical model. Boundary conditions are a critical input to the algorithm, and are often determined by time-consuming point correspondence methods requiring manual user input. Unfortunately, generation of accurate boundary conditions for the biomechanical model is often difficult due to the challenge of accurately matching points between the source and target surfaces and consequently necessitates the use of large numbers of fiducial markers. This study presents a novel method of automatically generating boundary conditions by non-rigidly registering two image sets with a Demons diffusion-based registration algorithm. The use of this method was successfully performed in silico using magnetic resonance and X-ray computed tomography image data with known boundary conditions. These preliminary results have produced boundary conditions with accuracy of up to 80% compared to the known conditions. Finally, these boundary conditions were utilized within a 3D MIE reconstruction to determine an elasticity contrast ratio between tumor and normal tissue. Preliminary results show a reasonable characterization of the material properties on this first attempt and a significant improvement in the automation level and viability of the method.

  5. Measurement of Strain in Cardiac Myocytes at Micrometer Scale Based on Rapid Scanning Confocal Microscopy and Non-Rigid Image Registration.

    Science.gov (United States)

    Lichter, J; Li, Hui; Sachse, Frank B

    2016-10-01

    Measurement of cell shortening is an important technique for assessment of physiology and pathophysiology of cardiac myocytes. Many types of heart disease are associated with decreased myocyte shortening, which is commonly caused by structural and functional remodeling. Here, we present a new approach for local measurement of 2-dimensional strain within cells at high spatial resolution. The approach applies non-rigid image registration to quantify local displacements and Cauchy strain in images of cells undergoing contraction. We extensively evaluated the approach using synthetic cell images and image sequences from rapid scanning confocal microscopy of fluorescently labeled isolated myocytes from the left ventricle of normal and diseased canine heart. Application of the approach yielded a comprehensive description of cellular strain including novel measurements of transverse strain and spatial heterogeneity of strain. Quantitative comparison with manual measurements of strain in image sequences indicated reliability of the developed approach. We suggest that the developed approach provides researchers with a novel tool to investigate contractility of cardiac myocytes at subcellular scale. In contrast to previously introduced methods for measuring cell shorting, the developed approach provides comprehensive information on the spatio-temporal distribution of 2-dimensional strain at micrometer scale.

  6. Objective evaluation of the correction by non-rigid registration of abdominal organ motion in low-dose 4D dynamic contrast-enhanced CT

    Science.gov (United States)

    Piper, Jim; Ikeda, Yoshihiro; Fujisawa, Yasuko; Ohno, Yoshiharu; Yoshikawa, Takeshi; O'Neil, Alison; Poole, Ian

    2012-03-01

    We objectively evaluate a straightforward registration method for correcting respiration-induced movement of abdominal organs in CT perfusion studies by measuring the distributions of alignment errors between corresponding landmark pairs. We introduce the concept and describe the advantages of using the surface-normal component of distance between pairs of corresponding landmarks selected so that their surface normal is in one of the three coordinate axis directions, and show that such landmarks can be precisely placed with respect to the surface normal. Using a large population of landmark pairs on a substantial quantity of 4D dynamic contrast-enhanced CT volume data, we quantify the average alignment errors of abdominal organs that remain uncorrected by registration.

  7. Brownian Warps for Non-Rigid Registration

    DEFF Research Database (Denmark)

    Nielsen, Mads; Johansen, Peter; Jackson, Andrew D.;

    2008-01-01

    prior, we formulate a Partial Differential Equation for obtaining the maximally likely warp given matching constraints derived from the images. We solve for the free boundary conditions, and the bias toward smaller areas in the finite domain setting. Furthermore, we demonstrate the technique on 2D...

  8. A non-rigid point matching method with local topology preservation for accurate bladder dose summation in high dose rate cervical brachytherapy.

    Science.gov (United States)

    Chen, Haibin; Zhong, Zichun; Liao, Yuliang; Pompoš, Arnold; Hrycushko, Brian; Albuquerque, Kevin; Zhen, Xin; Zhou, Linghong; Gu, Xuejun

    2016-02-07

    GEC-ESTRO guidelines for high dose rate cervical brachytherapy advocate the reporting of the D2cc (the minimum dose received by the maximally exposed 2cc volume) to organs at risk. Due to large interfractional organ motion, reporting of accurate cumulative D2cc over a multifractional course is a non-trivial task requiring deformable image registration and deformable dose summation. To efficiently and accurately describe the point-to-point correspondence of the bladder wall over all treatment fractions while preserving local topologies, we propose a novel graphic processing unit (GPU)-based non-rigid point matching algorithm. This is achieved by introducing local anatomic information into the iterative update of correspondence matrix computation in the 'thin plate splines-robust point matching' (TPS-RPM) scheme. The performance of the GPU-based TPS-RPM with local topology preservation algorithm (TPS-RPM-LTP) was evaluated using four numerically simulated synthetic bladders having known deformations, a custom-made porcine bladder phantom embedded with twenty one fiducial markers, and 29 fractional computed tomography (CT) images from seven cervical cancer patients. Results show that TPS-RPM-LTP achieved excellent geometric accuracy with landmark residual distance error (RDE) of 0.7  ±  0.3 mm for the numerical synthetic data with different scales of bladder deformation and structure complexity, and 3.7  ±  1.8 mm and 1.6  ±  0.8 mm for the porcine bladder phantom with large and small deformation, respectively. The RDE accuracy of the urethral orifice landmarks in patient bladders was 3.7  ±  2.1 mm. When compared to the original TPS-RPM, the TPS-RPM-LTP improved landmark matching by reducing landmark RDE by 50  ±  19%, 37  ±  11% and 28  ±  11% for the synthetic, porcine phantom and the patient bladders, respectively. This was achieved with a computational time of less than 15 s in all cases

  9. Numerical methods for image registration

    CERN Document Server

    Modersitzki, Jan

    2003-01-01

    Based on the author's lecture notes and research, this well-illustrated and comprehensive text is one of the first to provide an introduction to image registration with particular emphasis on numerical methods in medical imaging. Ideal for researchers in industry and academia, it is also a suitable study guide for graduate mathematicians, computer scientists, engineers, medical physicists, and radiologists.Image registration is utilised whenever information obtained from different viewpoints needs to be combined or compared and unwanted distortion needs to be eliminated. For example, CCTV imag

  10. Validation of experts versus atlas-based and automatic registration methods for subthalamic nucleus targeting on MRI

    Energy Technology Data Exchange (ETDEWEB)

    Sanchez Castro, F.J.; Cuisenaire, O.; Thiran, J.P. [Ecole Polytechnique Federale de Lausanne (EPFL) (Switzerland). Signal Processing Inst.; Pollo, C. [Ecole Polytechnique Federale de Lausanne (EPFL) (Switzerland). Signal Processing Inst.; Centre Hospitalier Universitaire Vaudois (CHUV), Lausanne (Switzerland). Dept. of Neurosurgery; Villemure, J.G. [Centre Hospitalier Universitaire Vaudois (CHUV), Lausanne (Switzerland). Dept. of Neurosurgery

    2006-03-15

    Objects: In functional stereotactic neurosurgery, one of the cornerstones upon which the success and the operating time depends is an accurate targeting. The subthalamic nucleus (STN) is the usual target involved when applying deep brain stimulation for Parkinson's disease (PD). Unfortunately, STN is usually not clearly visible in common medical imaging modalities, which justifies the use of atlas-based segmentation techniques to infer the STN location. Materials and methods: Eight bilaterally implanted PD patients were included in this study. A three-dimensional T1-weighted sequence and inversion recovery T2-weighted coronal slices were acquired pre-operatively. We propose a methodology for the construction of a ground truth of the STN location and a scheme that allows both, to perform a comparison between different non-rigid registration algorithms and to evaluate their usability to locate the STN automatically. Results: The intra-expert variability in identifying the STN location is 1.06{+-}0.61 mm while the best non-rigid registration method gives an error of 1.80{+-}0.62 mm. On the other hand, statistical tests show that an affine registration with only 12 degrees of freedom is not enough for this application. Conclusions: Using our validation-evaluation scheme, we demonstrate that automatic STN localization is possible and accurate with non-rigid registration algorithms. (orig.)

  11. Efficient nonrigid registration using ranked order statistics

    DEFF Research Database (Denmark)

    Tennakoon, Ruwan B.; Bab-Hadiashar, Alireza; de Bruijne, Marleen

    2013-01-01

    Non-rigid image registration techniques are widely used in medical imaging applications. Due to high computational complexities of these techniques, finding appropriate registration method to both reduce the computation burden and increase the registration accuracy has become an intense area...... of research. In this paper we propose a fast and accurate non-rigid registration method for intra-modality volumetric images. Our approach exploits the information provided by an order statistics based segmentation method, to find the important regions for registration and use an appropriate sampling scheme...... to target those areas and reduce the registration computation time. A unique advantage of the proposed method is its ability to identify the point of diminishing returns and stop the registration process. Our experiments on registration of real lung CT images, with expert annotated landmarks, show...

  12. SU-F-BRF-09: A Non-Rigid Point Matching Method for Accurate Bladder Dose Summation in Cervical Cancer HDR Brachytherapy

    Energy Technology Data Exchange (ETDEWEB)

    Chen, H; Zhen, X; Zhou, L [Southern Medical University, Guangzhou, Guangdong (China); Zhong, Z [The University of Texas at Dallas, Department of Computer Science, TX (United States); Pompos, A; Yan, H; Jiang, S; Gu, X [UT Southwestern Medical Center, Dallas, TX (United States)

    2014-06-15

    Purpose: To propose and validate a deformable point matching scheme for surface deformation to facilitate accurate bladder dose summation for fractionated HDR cervical cancer treatment. Method: A deformable point matching scheme based on the thin plate spline robust point matching (TPSRPM) algorithm is proposed for bladder surface registration. The surface of bladders segmented from fractional CT images is extracted and discretized with triangular surface mesh. Deformation between the two bladder surfaces are obtained by matching the two meshes' vertices via the TPS-RPM algorithm, and the deformation vector fields (DVFs) characteristic of this deformation is estimated by B-spline approximation. Numerically, the algorithm is quantitatively compared with the Demons algorithm using five clinical cervical cancer cases by several metrics: vertex-to-vertex distance (VVD), Hausdorff distance (HD), percent error (PE), and conformity index (CI). Experimentally, the algorithm is validated on a balloon phantom with 12 surface fiducial markers. The balloon is inflated with different amount of water, and the displacement of fiducial markers is benchmarked as ground truth to study TPS-RPM calculated DVFs' accuracy. Results: In numerical evaluation, the mean VVD is 3.7(±2.0) mm after Demons, and 1.3(±0.9) mm after TPS-RPM. The mean HD is 14.4 mm after Demons, and 5.3mm after TPS-RPM. The mean PE is 101.7% after Demons and decreases to 18.7% after TPS-RPM. The mean CI is 0.63 after Demons, and increases to 0.90 after TPS-RPM. In the phantom study, the mean Euclidean distance of the fiducials is 7.4±3.0mm and 4.2±1.8mm after Demons and TPS-RPM, respectively. Conclusions: The bladder wall deformation is more accurate using the feature-based TPS-RPM algorithm than the intensity-based Demons algorithm, indicating that TPS-RPM has the potential for accurate bladder dose deformation and dose summation for multi-fractional cervical HDR brachytherapy. This work is supported

  13. Learning-Based Tracking of Complex Non-Rigid Motion

    Institute of Scientific and Technical Information of China (English)

    Qiang Wang; Hai-Zhou Ai; Guang-You Xu

    2004-01-01

    This paper describes a novel method for tracking complex non-rigid motions by learning the intrinsic object structure.The approach builds on and extends the studies on non-linear dimensionality reduction for object representation,object dynamics modeling and particle filter style tracking.First,the dimensionality reduction and density estimation algorithm is derived for unsupervised learning of object intrinsic representation,and the obtained non-rigid part of object state reduces even to 2-3 dimensions.Secondly the dynamical model is derived and trained based on this intrinsic representation.Thirdly the learned intrinsic object structure is integrated into a particle filter style tracker.It is shown that this intrinsic object representation has some interesting properties and based on which the newly derived dynamical model makes particle filter style tracker more robust and reliable.Extensive experiments are done on the tracking of challenging non-rigid motions such as fish twisting with selfocclusion,large inter-frame lip motion and facial expressions with global head rotation.Quantitative results are given to make comparisons between the newly proposed tracker and the existing tracker.The proposed method also has the potential to solve other type of tracking problems.

  14. Non-rigid Reconstruction of Casting Process with Temperature Feature

    Science.gov (United States)

    Lin, Jinhua; Wang, Yanjie; Li, Xin; Wang, Ying; Wang, Lu

    2017-09-01

    Off-line reconstruction of rigid scene has made a great progress in the past decade. However, the on-line reconstruction of non-rigid scene is still a very challenging task. The casting process is a non-rigid reconstruction problem, it is a high-dynamic molding process lacking of geometric features. In order to reconstruct the casting process robustly, an on-line fusion strategy is proposed for dynamic reconstruction of casting process. Firstly, the geometric and flowing feature of casting are parameterized in manner of TSDF (truncated signed distance field) which is a volumetric block, parameterized casting guarantees real-time tracking and optimal deformation of casting process. Secondly, data structure of the volume grid is extended to have temperature value, the temperature interpolation function is build to generate the temperature of each voxel. This data structure allows for dynamic tracking of temperature of casting during deformation stages. Then, the sparse RGB features is extracted from casting scene to search correspondence between geometric representation and depth constraint. The extracted color data guarantees robust tracking of flowing motion of casting. Finally, the optimal deformation of the target space is transformed into a nonlinear regular variational optimization problem. This optimization step achieves smooth and optimal deformation of casting process. The experimental results show that the proposed method can reconstruct the casting process robustly and reduce drift in the process of non-rigid reconstruction of casting.

  15. Accuracy Validation for Medical Image Registration Algorithms: a Review

    Institute of Scientific and Technical Information of China (English)

    Zhe Liu; Xiang Deng; Guang-zhi Wang

    2012-01-01

    Accuracy validation is essential to clinical application of medical image registration techniques.Registration validation remains a challenging problem in practice mainly due to lack of 'ground truth'.In this paper,an overview of current validation methods for medical image registration is presented with detailed discussion of their benefits and drawbacks.Special focus is on non-rigid registration validation.Promising solution is also discussed.

  16. Nonrigid registration of volumetric images using ranked order statistics

    DEFF Research Database (Denmark)

    Tennakoon, Ruwan; Bab-Hadiashar, Alireza; Cao, Zhenwei

    2014-01-01

    Non-rigid image registration techniques using intensity based similarity measures are widely used in medical imaging applications. Due to high computational complexities of these techniques, particularly for volumetric images, finding appropriate registration methods to both reduce the computation...... burden and increase the registration accuracy has become an intensive area of research. In this paper we propose a fast and accurate non-rigid registration method for intra-modality volumetric images. Our approach exploits the information provided by an order statistics based segmentation method, to find...... the important regions for registration and use an appropriate sampling scheme to target those areas and reduce the registration computation time. A unique advantage of the proposed method is its ability to identify the point of diminishing returns and stop the registration process. Our experiments...

  17. Full Non-Rigid Group and Symmetry of Dimethyltrichlorophosphorus

    Institute of Scientific and Technical Information of China (English)

    ASHRAFI; AliReza

    2005-01-01

    In this work, a simple method is described, by means of which it is possible to calculate character tables for the symmetry group of molecules consisting of a number of NH3 groups attached to a rigid framework. The full non-rigid group (f-NRG) of dimethyltrichlorophosphorus with the symmetry group D3h was studied. It has been proven that it is a group of order 216 with 27 conjugacy classes and its character table computed. Finally, the Permutation-lnversion group of this molecule was calculated.

  18. Sequential Non-Rigid Structure from Motion Using Physical Priors.

    Science.gov (United States)

    Agudo, Antonio; Moreno-Noguer, Francesc; Calvo, Begona; Montiel, Jose M Martinez

    2016-05-01

    We propose a new approach to simultaneously recover camera pose and 3D shape of non-rigid and potentially extensible surfaces from a monocular image sequence. For this purpose, we make use of the Extended Kalman Filter based Simultaneous Localization And Mapping (EKF-SLAM) formulation, a Bayesian optimization framework traditionally used in mobile robotics for estimating camera pose and reconstructing rigid scenarios. In order to extend the problem to a deformable domain we represent the object's surface mechanics by means of Navier's equations, which are solved using a Finite Element Method (FEM). With these main ingredients, we can further model the material's stretching, allowing us to go a step further than most of current techniques, typically constrained to surfaces undergoing isometric deformations. We extensively validate our approach in both real and synthetic experiments, and demonstrate its advantages with respect to competing methods. More specifically, we show that besides simultaneously retrieving camera pose and non-rigid shape, our approach is adequate for both isometric and extensible surfaces, does not require neither batch processing all the frames nor tracking points over the whole sequence and runs at several frames per second.

  19. Fast fluid registration of medical images

    DEFF Research Database (Denmark)

    Bro-Nielsen, Morten; Gramkow, Claus

    1996-01-01

    This paper offers a new fast algorithm for non-rigid viscous fluid registration of medical images that is at least an order of magnitude faster than the previous method by (Christensen et al., 1994). The core algorithm in the fluid registration method is based on a linear elastic deformation...... of the velocity field of the fluid. Using the linearity of this deformation we derive a convolution filter which we use in a scale-space framework. We also demonstrate that the `demon'-based registration method of (Thirion, 1996) can be seen as an approximation to the fluid registration method and point...

  20. Analysis and optimization of assembly variations for non-rigid parts

    Institute of Scientific and Technical Information of China (English)

    2005-01-01

    Traditional variation analysis methods are not applicable to non-rigid assemblies due to possible part deformation during the assembly process. This paper presents the use of finite element methods to simulate assembly deformation. The relationship between the parts' variation and the variation of the key points in final assembly for quality control is set up by calculating the spring back deformation after assembly. Moreover, the optimization method for non-rigid assembly variations based on finite element analysis is presented. The optimal objective is to reduce the manufacturing cost. The approach is implemented by using ANSYS and MATLAB. The test example shows that the proposed method is effective and applicable.

  1. Real-time Animation Technique for a Kind of Non-rigid Objects

    Institute of Scientific and Technical Information of China (English)

    2003-01-01

    A real-time animation technique for a kind of non-rigid objects, flexible and thin objects, is proposed, which can update with stability the state of n mass points of the mass-spring (MS) model with time complexity of O(n). The new implicit numerical integration technique of the authors, which is based on a simple approximation of the linear system, has great advantages over the existing implicit integration methods. Moreover, experiment shows that the new technique is highly efficient in animating a kind of non-rigid objects, and suitable for the draping module of the 3D garment CAD system.

  2. Image registration method for medical image sequences

    Science.gov (United States)

    Gee, Timothy F.; Goddard, James S.

    2013-03-26

    Image registration of low contrast image sequences is provided. In one aspect, a desired region of an image is automatically segmented and only the desired region is registered. Active contours and adaptive thresholding of intensity or edge information may be used to segment the desired regions. A transform function is defined to register the segmented region, and sub-pixel information may be determined using one or more interpolation methods.

  3. A Condition Number for Non-Rigid Shape Matching

    KAUST Repository

    Ovsjanikov, Maks

    2011-08-01

    © 2011 The Author(s). Despite the large amount of work devoted in recent years to the problem of non-rigid shape matching, practical methods that can successfully be used for arbitrary pairs of shapes remain elusive. In this paper, we study the hardness of the problem of shape matching, and introduce the notion of the shape condition number, which captures the intuition that some shapes are inherently more difficult to match against than others. In particular, we make a connection between the symmetry of a given shape and the stability of any method used to match it while optimizing a given distortion measure. We analyze two commonly used classes of methods in deformable shape matching, and show that the stability of both types of techniques can be captured by the appropriate notion of a condition number. We also provide a practical way to estimate the shape condition number and show how it can be used to guide the selection of landmark correspondences between shapes. Thus we shed some light on the reasons why general shape matching remains difficult and provide a way to detect and mitigate such difficulties in practice.

  4. A review of segmentation and deformable registration methods applied to adaptive cervical cancer radiation therapy treatment planning.

    Science.gov (United States)

    Ghose, Soumya; Holloway, Lois; Lim, Karen; Chan, Philip; Veera, Jacqueline; Vinod, Shalini K; Liney, Gary; Greer, Peter B; Dowling, Jason

    2015-06-01

    Manual contouring and registration for radiotherapy treatment planning and online adaptation for cervical cancer radiation therapy in computed tomography (CT) and magnetic resonance images (MRI) are often necessary. However manual intervention is time consuming and may suffer from inter or intra-rater variability. In recent years a number of computer-guided automatic or semi-automatic segmentation and registration methods have been proposed. Segmentation and registration in CT and MRI for this purpose is a challenging task due to soft tissue deformation, inter-patient shape and appearance variation and anatomical changes over the course of treatment. The objective of this work is to provide a state-of-the-art review of computer-aided methods developed for adaptive treatment planning and radiation therapy planning for cervical cancer radiation therapy. Segmentation and registration methods published with the goal of cervical cancer treatment planning and adaptation have been identified from the literature (PubMed and Google Scholar). A comprehensive description of each method is provided. Similarities and differences of these methods are highlighted and the strengths and weaknesses of these methods are discussed. A discussion about choice of an appropriate method for a given modality is provided. In the reviewed papers a Dice similarity coefficient of around 0.85 along with mean absolute surface distance of 2-4mm for the clinically treated volume were reported for transfer of contours from planning day to the treatment day. Most segmentation and non-rigid registration methods have been primarily designed for adaptive re-planning for the transfer of contours from planning day to the treatment day. The use of shape priors significantly improved segmentation and registration accuracy compared to other models. Copyright © 2015 Elsevier B.V. All rights reserved.

  5. Evaluation of registration methods on thoracic CT

    DEFF Research Database (Denmark)

    Murphy, K.; van Ginneken, B.; Reinhardt, J.

    2011-01-01

    . This is compounded by the fact that researchers typically test only on their own data, which varies widely. For this reason, reliable assessment and comparison of different registration algorithms has been virtually impossible in the past. In this work we present the results of the launch phase of EMPIRE10, which...... method and the evaluation is independent, using the same criteria for all participants. All results are published on the EMPIRE10 website (http://empire10.isi.uu.nl). The challenge remains ongoing and open to new participants. Full results from 24 algorithms have been published at the time of writing...

  6. Non-rigid precession of magnetic stars

    CERN Document Server

    Lander, S K

    2016-01-01

    Stars are, generically, rotating and magnetised objects with a misalignment between their magnetic and rotation axes. Since a magnetic field induces a permanent distortion to its host, it provides effective rigidity even to a fluid star, leading to bulk stellar motion which resembles free precession. This bulk motion is however accompanied by induced interior velocity and magnetic field perturbations, which are oscillatory on the precession timescale. Extending previous work, we show that these quantities are described by a set of second-order perturbation equations featuring cross-terms scaling with the product of the magnetic and centrifugal distortions to the star. For the case of a background toroidal field, we reduce these to a set of differential equations in radial functions, and find a method for their solution. The resulting magnetic-field and velocity perturbations show complex multipolar structure and are strongest towards the centre of the star.

  7. Non-rigid alignment of preoperative MRI, fMRI, and DT-MRI with intra-operative MRI for enhanced visualization and navigation in image-guided neurosurgery

    Science.gov (United States)

    Archip, Neculai; Clatz, Olivier; Whalen, Stephen; Kacher, Dan; Fedorov, Andriy; Kot, Andriy; Chrisochoides, Nikos; Jolesz, Ferenc; Golby, Alexandra; Black, Peter M.; Warfield, Simon K.

    2012-01-01

    Objective The usefulness of neurosurgical navigation with current visualizations is seriously compromised by brain shift, which inevitably occurs during the course of the operation, significantly degrading the precise alignment between the preoperative MR data and the intra-operative shape of the brain. Our objectives were (i) to evaluate the feasibility of non-rigid registration that compensates for the brain deformations within the time constraints imposed by neurosurgery, and (ii) create augmented reality visualizations of critical structural and functional brain regions during neurosurgery using pre-operatively acquired fMRI and DT-MRI. Materials and Methods Eleven consecutive patients with supratentorial gliomas were included in our study. All underwent surgery at our intra-operative MR imaging–guided therapy facility and have tumors in eloquent brain areas (e.g. precentral gyrus and cortico-spinal tract). Functional MRI and DT-MRI, together with MPRAGE and T2w structural MRI were acquired at 3T prior to surgery. SPGR and T2w images were acquired with a 0.5T magnet during each procedure. Quantitative assessment of the alignment accuracy was carried out and compared with current state-of the-art systems based only on rigid-registration. Results Alignment between preoperative and intra-operative datasets was successfully carried out during surgery for all patients. Overall, the mean residual displacement remaining after non-rigid registration was 1.82 mm. There is a statistically significant improvement in alignment accuracy utilizing our non-rigid registration in comparison to the currently used technology (paugmented reality visualization to aid the surgeon. PMID:17289403

  8. Parallel image registration method for snapshot Fourier transform imaging spectroscopy

    Science.gov (United States)

    Zhang, Yu; Zhu, Shuaishuai; Lin, Jie; Zhu, Feijia; Jin, Peng

    2017-08-01

    A fast and precise registration method for multi-image snapshot Fourier transform imaging spectroscopy is proposed. This method accomplishes registration of an image array using the positional relationship between homologous points in the subimages, which are obtained offline by preregistration. Through the preregistration process, the registration problem is converted to the problem of using a registration matrix to interpolate subimages. Therefore, the hardware interpolation of graphics processing unit (GPU) texture memory, which has speed advantages for its parallel computing, can be used to significantly enhance computational efficiency. Compared to a central processing unit, GPU performance showed ˜27 times acceleration in registration efficiency.

  9. Development and application of pulmonary structure-function registration methods: towards pulmonary image-guidance tools for improved airway targeted therapies and outcomes

    Science.gov (United States)

    Guo, Fumin; Pike, Damien; Svenningsen, Sarah; Coxson, Harvey O.; Drozd, John J.; Yuan, Jing; Fenster, Aaron; Parraga, Grace

    2014-03-01

    Objectives: We aimed to develop a way to rapidly generate multi-modality (MRI-CT) pulmonary imaging structurefunction maps using novel non-rigid image registration methods. This objective is part of our overarching goal to provide an image processing pipeline to generate pulmonary structure-function maps and guide airway-targeted therapies. Methods: Anatomical 1H and functional 3He MRI were acquired in 5 healthy asymptomatic ex-smokers and 7 ex-smokers with chronic obstructive pulmonary disease (COPD) at inspiration breath-hold. Thoracic CT was performed within ten minutes of MRI using the same breath-hold volume. Landmark-based affine registration methods previously validated for imaging of COPD, was based on corresponding fiducial markers located in both CT and 1H MRI coronal slices and compared with shape-based CT-MRI non-rigid registration. Shape-based CT-MRI registration was developed by first identifying the shapes of the lung cavities manually, and then registering the two shapes using affine and thin-plate spline algorithms. We compared registration accuracy using the fiducial localization error (FLE) and target registration error (TRE). Results: For landmark-based registration, the TRE was 8.4±5.3 mm for whole lung and 7.8±4.6 mm for the R and L lungs registered independently (p=0.4). For shape-based registration, the TRE was 8.0±4.6 mm for whole lung as compared to 6.9±4.4 mm for the R and L lung registered independently and this difference was significant (p=0.01). The difference for shape-based (6.9±4.4 mm) and landmark-based R and L lung registration (7.8±4.6 mm) was also significant (p=.04) Conclusion: Shape-based registration TRE was significantly improved compared to landmark-based registration when considering L and R lungs independently.

  10. An Image Registration Method for Colposcopic Images

    Directory of Open Access Journals (Sweden)

    Efrén Mezura-Montes

    2013-01-01

    sequence and a division of such image into small windows. A search process is then carried out to find the window with the highest affinity in each image of the sequence and replace it with the window in the reference image. The affinity value is based on polynomial approximation of the time series computed and the search is bounded by a search radius which defines the neighborhood of each window. The proposed approach is tested in ten 310-frame real cases in two experiments: the first one to determine the best values for the window size and the search radius and the second one to compare the best obtained results with respect to four registration methods found in the specialized literature. The obtained results show a robust and competitive performance of the proposed approach with a significant lower time with respect to the compared methods.

  11. Effect of registration on corpus callosum population differences found with DBM analysis

    Science.gov (United States)

    Han, Zhaoying; Thornton-Wells, Tricia A.; Gore, John C.; Dawant, Benoit M.

    2011-03-01

    Deformation Based Morphometry (DBM) is a relatively new method used for characterizing anatomical differences among populations. DBM is based on the analysis of the deformation fields generated by non-rigid registration algorithms, which warp the individual volumes to one standard coordinate system. Although several studies have compared non-rigid registration algorithms for segmentation tasks, few studies have compared the effect of the registration algorithm on population differences that may be uncovered through DBM. In this study, we compared DBM results obtained with five well established non-rigid registration algorithms on the corpus callosum (CC) in thirteen subjects with Williams Syndrome (WS) and thirteen Normal Control (NC) subjects. The five non-rigid registration algorithms include: (1) The Adaptive Basis Algorithm (ABA); (2) Image Registration Toolkit (IRTK); (3) FSL Nonlinear Image Registration Tool (FSL); (4) Automatic Registration Tools (ART); and (5) the normalization algorithm available in SPM8. For each algorithm, the 3D deformation fields from all subjects to the atlas were obtained and used to calculate the Jacobian determinant (JAC) at each voxel in the mid-sagittal slice of the CC. The mean JAC maps for each group were compared quantitatively across different nonrigid registration algorithms. An ANOVA test performed on the means of the JAC over the Genu and the Splenium ROIs shows the JAC differences between nonrigid registration algorithms are statistically significant over the Genu for both groups and over the Splenium for the NC group. These results suggest that it is important to consider the effect of registration when using DBM to compute morphological differences in populations.

  12. A fast alignment method for breast MRI follow-up studies using automated breast segmentation and current-prior registration

    Science.gov (United States)

    Wang, Lei; Strehlow, Jan; Rühaak, Jan; Weiler, Florian; Diez, Yago; Gubern-Merida, Albert; Diekmann, Susanne; Laue, Hendrik; Hahn, Horst K.

    2015-03-01

    In breast cancer screening for high-risk women, follow-up magnetic resonance images (MRI) are acquired with a time interval ranging from several months up to a few years. Prior MRI studies may provide additional clinical value when examining the current one and thus have the potential to increase sensitivity and specificity of screening. To build a spatial correlation between suspicious findings in both current and prior studies, a reliable alignment method between follow-up studies is desirable. However, long time interval, different scanners and imaging protocols, and varying breast compression can result in a large deformation, which challenges the registration process. In this work, we present a fast and robust spatial alignment framework, which combines automated breast segmentation and current-prior registration techniques in a multi-level fashion. First, fully automatic breast segmentation is applied to extract the breast masks that are used to obtain an initial affine transform. Then, a non-rigid registration algorithm using normalized gradient fields as similarity measure together with curvature regularization is applied. A total of 29 subjects and 58 breast MR images were collected for performance assessment. To evaluate the global registration accuracy, the volume overlap and boundary surface distance metrics are calculated, resulting in an average Dice Similarity Coefficient (DSC) of 0.96 and root mean square distance (RMSD) of 1.64 mm. In addition, to measure local registration accuracy, for each subject a radiologist annotated 10 pairs of markers in the current and prior studies representing corresponding anatomical locations. The average distance error of marker pairs dropped from 67.37 mm to 10.86 mm after applying registration.

  13. Experiment and numerical simulation on the characteristics of fluid–structure interactions of non-rigid airships

    Directory of Open Access Journals (Sweden)

    Xiaocui Wu

    2015-11-01

    Full Text Available Fluid–structure interaction is an important issue for non-rigid airships with inflated envelopes. In this study, a wind tunnel test is conducted, and a loosely coupled procedure is correspondingly established for numerical simulation based on computational fluid dynamics and nonlinear finite element analysis methods. The typical results of the numerical simulation and wind tunnel experiment, including the overall lift and deformation, are in good agreement with each other. The results obtained indicate that the effect of fluid–structure interaction is noticeable and should be considered for non-rigid airships. Flow-induced deformation can further intensify the upward lift force and pitching moment, which can lead to a large deformation. Under a wind speed of 15 m/s, the lift force of the non-rigid model is increased to approximately 60% compared with that of the rigid model under a high angle of attack.

  14. A registration method for 2D blade profile

    Science.gov (United States)

    Zhang, Bin; Fang, Jianguo; Liu, Pengfei

    2016-10-01

    Fast and accurate registration research has important theory significance and engineering application value in improving digital measurement accuracy and efficiency. Aiming at solving registration precision and registration speed problem, the extraction scheme of contour dominant point, correspondence establishment method and the objective function of registration are discussed in the paper. Compared with other extraction ones, the scheme can extract typical characters of the blade contour effectively. It is essential to sample measuring points which can represent the entire blade with sufficient confidence and accuracy. Unlike the registration method that only minimizes the one-way distance between the data points and the initial fitted curves, the weighted mutual (two-way) distances between the template profile curves and the data points as the objective function is considered in the paper. The registration algorithm based on iterative closest point algorithm is introduced in details. Using experimental method, the validation of proposed model registration algorithm is verified. Two experimental examples were used to demonstrate registration precision and effectiveness.

  15. Non-Rigid Object Tracking by Anisotropic Kernel Mean Shift

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    Mean shift, an iterative procedure that shifts each data point to the average of data points in its neighborhood, has been applied to object tracker. However, the traditional mean shift tracker by isotropic kernel often loses the object with the changing object structure in video sequences, especially when the object structure varies fast. This paper proposes a non-rigid object tracker by anisotropic kernel mean shift in which the shape, scale, and orientation of the kernels adapt to the changing object structure. The experimental results show that the new tracker is self-adaptive and approximately twice faster than the traditional tracker, which ensures the robustness and real time of tracking.

  16. Hospital Registration Process Reengineering Using Simulation Method

    Directory of Open Access Journals (Sweden)

    Qiang Su

    2010-01-01

    Full Text Available With increasing competition, many healthcare organizations have undergone tremendous reform in the last decade aiming to increase efficiency, decrease waste, and reshape the way that care is delivered. This study focuses on the operational efficiency improvement of hospital’s registration process. The operational efficiency related factors including the service process, queue strategy, and queue parameters were explored systematically and illustrated with a case study. Guided by the principle of business process reengineering (BPR, a simulation approach was employed for process redesign and performance optimization. As a result, the queue strategy is changed from multiple queues and multiple servers to single queue and multiple servers with a prepare queue. Furthermore, through a series of simulation experiments, the length of the prepare queue and the corresponding registration process efficiency was quantitatively evaluated and optimized.

  17. Multi-band Image Registration Method Based on Fourier Transform

    Institute of Scientific and Technical Information of China (English)

    庹红娅; 刘允才

    2004-01-01

    This paper presented a registration method based on Fourier transform for multi-band images which is involved in translation and small rotation. Although different band images differ a lot in the intensity and features,they contain certain common information which we can exploit. A model was given that the multi-band images have linear correlations under the least-square sense. It is proved that the coefficients have no effect on the registration progress if two images have linear correlations. Finally, the steps of the registration method were proposed. The experiments show that the model is reasonable and the results are satisfying.

  18. Population based ranking of frameless CT-MRI registration methods

    Energy Technology Data Exchange (ETDEWEB)

    Opposits, Gabor; Kis, Sandor A.; Tron, Lajos; Emri, Miklos [Debrecen Univ. (Hungary). Dept. of Nuclear Medicine; Berenyi, Ervin [Debrecen Univ. (Hungary). Dept. of Biomedical Laboratory and Imaging Science; Takacs, Endre [Rotating Gamma Ltd., Debrecen (Hungary); Dobai, Jozsef G.; Bognar, Laszlo [Debrecen Univ., Medical Center (Hungary). Dept. of Neurosurgery; Szuecs, Bernadett [ScanoMed Ltd., Debrecen (Hungary)

    2015-07-01

    Clinical practice often requires simultaneous information obtained by two different imaging modalities. Registration algorithms are commonly used for this purpose. Automated procedures are very helpful in cases when the same kind of registration has to be performed on images of a high number of subjects. Radiotherapists would prefer to use the best automated method to assist therapy planning, however there are not accepted procedures for ranking the different registration algorithms. We were interested in developing a method to measure the population level performance of CT-MRI registration algorithms by a parameter of values in the [0,1] interval. Pairs of CT and MRI images were collected from 1051 subjects. Results of an automated registration were corrected manually until a radiologist and a neurosurgeon expert both accepted the result as good. This way 1051 registered MRI images were produced by the same pair of experts to be used as gold standards for the evaluation of the performance of other registration algorithms. Pearson correlation coefficient, mutual information, normalized mutual information, Kullback-Leibler divergence, L{sub 1} norm and square L{sub 2} norm (dis)similarity measures were tested for sensitivity to indicate the extent of (dis)similarity of a pair of individual mismatched images. The square Hellinger distance proved suitable to grade the performance of registration algorithms at population level providing the developers with a valuable tool to rank algorithms. The developed procedure provides an objective method to find the registration algorithm performing the best on the population level out of newly constructed or available preselected ones.

  19. A MNCIE method for registration of ultrasound images

    Institute of Scientific and Technical Information of China (English)

    JIN Jing; WANG Qiang; SHEN Yi

    2007-01-01

    A new approach to the problem of registration of ultrasound images is presented, using a concept of Nonlinear Correlation Information Entropy (NCIE) as the matching criterion. The proposed method applies NCIE to measure the correlation degree between the image intensities of corresponding voxel in the floating and reference images. Registration is achieved by adjustment of the relative position until NCIE between the images is maximized. However, unlike mutual information (MI), NCIE varies in the closed interval [0, 1 ], and around the extremum it varies sharply, which makes it possible that thresholds of NCIE can be used to boost the search for the registration transformation. Using this feature of NCIE, we combine the downhill simplex searching algorithm to register the ultrasound images. The simulations are conducted to testify the effectiveness and rapidity of the proposed registration method, in which the ultrasound floating images are aligned to the reference images with required registration accuracy. Moreover, the NCIE based method can overcome local minima problem by setting thresholds and can take care of the differences in contrast between the floating and reference images.

  20. An ASIFT-Based Local Registration Method for Satellite Imagery

    Directory of Open Access Journals (Sweden)

    Xiangjun Wang

    2015-05-01

    Full Text Available Imagery registration is a fundamental step, which greatly affects later processes in image mosaic, multi-spectral image fusion, digital surface modelling, etc., where the final solution needs blending of pixel information from more than one images. It is highly desired to find a way to identify registration regions among input stereo image pairs with high accuracy, particularly in remote sensing applications in which ground control points (GCPs are not always available, such as in selecting a landing zone on an outer space planet. In this paper, a framework for localization in image registration is developed. It strengthened the local registration accuracy from two aspects: less reprojection error and better feature point distribution. Affine scale-invariant feature transform (ASIFT was used for acquiring feature points and correspondences on the input images. Then, a homography matrix was estimated as the transformation model by an improved random sample consensus (IM-RANSAC algorithm. In order to identify a registration region with a better spatial distribution of feature points, the Euclidean distance between the feature points is applied (named the S criterion. Finally, the parameters of the homography matrix were optimized by the Levenberg–Marquardt (LM algorithm with selective feature points from the chosen registration region. In the experiment section, the Chang’E-2 satellite remote sensing imagery was used for evaluating the performance of the proposed method. The experiment result demonstrates that the proposed method can automatically locate a specific region with high registration accuracy between input images by achieving lower root mean square error (RMSE and better distribution of feature points.

  1. Segmenting the Parotid Gland using Registration and Level Set Methods

    DEFF Research Database (Denmark)

    Hollensen, Christian; Hansen, Mads Fogtmann; Højgaard, Liselotte;

    The bilateral parotid glands were segmented using a registration scheme followed by level set segmentation. A training set consisting of computerized tomography from 10 patients with segmentation of the bilateral glands were used to optimize the parameters of registration and level set segmentation....... The method was evaluated on a test set consisting of 8 corresponding data sets. The attained total volume Dice coefficient and mean Haussdorff distance were 0.61 ± 0.20 and 15.6 ± 7.4 mm respectively. The method has improvement potential which could be exploited in order for clinical introduction....

  2. Automated registration of freehand B-mode ultrasound and magnetic resonance imaging of the carotid arteries based on geometric features

    DEFF Research Database (Denmark)

    Carvalho, Diego D. B.; Arias Lorza, Andres Mauricio; Niessen, Wiro J.;

    2017-01-01

    An automated method for registering B-mode ultrasound (US) and magnetic resonance imaging (MRI) of the carotid arteries is proposed. The registration uses geometric features, namely, lumen centerlines and lumen segmentations, which are extracted fully automatically from the images after manual...... annotation of three seed points in US and MRI. The registration procedure starts with alignment of the lumen centerlines using a point-based registration algorithm. The resulting rigid transformation is used to initialize a rigid and subsequent non-rigid registration procedure that jointly aligns centerlines...

  3. Automatic registration method for mobile LiDAR data

    Science.gov (United States)

    Wang, Ruisheng; Ferrie, Frank P.

    2015-01-01

    We present an automatic mutual information (MI) registration method for mobile LiDAR and panoramas collected from a driving vehicle. The suitability of MI for registration of aerial LiDAR and aerial oblique images has been demonstrated under an assumption that minimization of joint entropy (JE) is a sufficient approximation of maximization of MI. We show that this assumption is invalid for the ground-level data. The entropy of a LiDAR image cannot be regarded as approximately constant for small perturbations. Instead of minimizing the JE, we directly maximize MI to estimate corrections of camera poses. Our method automatically registers mobile LiDAR with spherical panoramas over an approximate 4-km drive, and is the first example we are aware of that tests MI registration in a large-scale context.

  4. Medical Image Registration and Surgery Simulation

    DEFF Research Database (Denmark)

    Bro-Nielsen, Morten

    1996-01-01

    This thesis explores the application of physical models in medical image registration and surgery simulation. The continuum models of elasticity and viscous fluids are described in detail, and this knowledge is used as a basis for most of the methods described here. Real-time deformable models......, and the use of selective matrix vector multiplication. Fluid medical image registration A new and faster algorithm for non-rigid registration using viscous fluid models is presented. This algorithm replaces the core part of the original algorithm with multi-resolution convolution using a new filter, which...... for surgery simulation Real-time deformable models, using finite element models of linear elasticity, have been developed for surgery simulation. The time consumption of the finite element method is reduced dramaticly, by the use of condensation techniques, explicit inversion of the stiffness matrix...

  5. Fast Registration Method for Point Clouds Using the Image Information

    Directory of Open Access Journals (Sweden)

    WANG Ruiyan

    2016-01-01

    Full Text Available On the existing laser scanners, there usually is a coaxial camera, which could capture images in the scanning site. For the laser scanners with a coaxial camera, we propose a fast registration method using the image information. Unlike the traditional registration methods that computing the rotation and translation simultaneously, our method calculates them individually. The rotation transformation between the point clouds is obtained by the knowledge of the vision geometry and the image information, while their translation is acquired by our improved ICP algorithm. In the improved ICP algorithm, only the translation vector is updated iteratively, whose input is the point clouds that removing the rotation transformation. Experimental results show that the rotation matrix obtained by the images has a high accuracy. In addition, compared with the traditional ICP algorithm, our algorithm converges faster and is easier to fall into the global optimum.

  6. Advanced methods for image registration applied to JET videos

    Energy Technology Data Exchange (ETDEWEB)

    Craciunescu, Teddy, E-mail: teddy.craciunescu@jet.uk [EURATOM-MEdC Association, NILPRP, Bucharest (Romania); Murari, Andrea [Consorzio RFX, Associazione EURATOM-ENEA per la Fusione, Padova (Italy); Gelfusa, Michela [Associazione EURATOM-ENEA – University of Rome “Tor Vergata”, Roma (Italy); Tiseanu, Ion; Zoita, Vasile [EURATOM-MEdC Association, NILPRP, Bucharest (Romania); Arnoux, Gilles [EURATOM/CCFE Fusion Association, Culham Science Centre, Abingdon, Oxon (United Kingdom)

    2015-10-15

    Graphical abstract: - Highlights: • Development of an image registration method for JET IR and fast visible cameras. • Method based on SIFT descriptors and coherent point drift points set registration technique. • Method able to deal with extremely noisy images and very low luminosity images. • Computation time compatible with the inter-shot analysis. - Abstract: The last years have witnessed a significant increase in the use of digital cameras on JET. They are routinely applied for imaging in the IR and visible spectral regions. One of the main technical difficulties in interpreting the data of camera based diagnostics is the presence of movements of the field of view. Small movements occur due to machine shaking during normal pulses while large ones may arise during disruptions. Some cameras show a correlation of image movement with change of magnetic field strength. For deriving unaltered information from the videos and for allowing correct interpretation an image registration method, based on highly distinctive scale invariant feature transform (SIFT) descriptors and on the coherent point drift (CPD) points set registration technique, has been developed. The algorithm incorporates a complex procedure for rejecting outliers. The method has been applied for vibrations correction to videos collected by the JET wide angle infrared camera and for the correction of spurious rotations in the case of the JET fast visible camera (which is equipped with an image intensifier). The method has proved to be able to deal with the images provided by this camera frequently characterized by low contrast and a high level of blurring and noise.

  7. A NEW IMAGE REGISTRATION METHOD FOR GREY IMAGES

    Institute of Scientific and Technical Information of China (English)

    Nie Xuan; Zhao Rongchun; Jiang Zetao

    2004-01-01

    The proposed algorithm relies on a group of new formulas for calculating tangent slope so as to address angle feature of edge curves of image. It can utilize tangent angle features to estimate automatically and fully the rotation parameters of geometric transform and enable rough matching of images with huge rotation difference. After angle compensation, it can search for matching point sets by correlation criterion, then calculate parameters of affine transform, enable higher-precision emendation of rotation and transferring. Finally, it fulfills precise matching for images with relax-tense iteration method. Compared with the registration approach based on wavelet direction-angle features, the matching algorithm with tangent feature of image edge is more robust and realizes precise registration of various images. Furthermore, it is also helpful in graphics matching.

  8. A novel scheme for automatic nonrigid image registration using deformation invariant feature and geometric constraint

    Science.gov (United States)

    Deng, Zhipeng; Lei, Lin; Zhou, Shilin

    2015-10-01

    Automatic image registration is a vital yet challenging task, particularly for non-rigid deformation images which are more complicated and common in remote sensing images, such as distorted UAV (unmanned aerial vehicle) images or scanning imaging images caused by flutter. Traditional non-rigid image registration methods are based on the correctly matched corresponding landmarks, which usually needs artificial markers. It is a rather challenging task to locate the accurate position of the points and get accurate homonymy point sets. In this paper, we proposed an automatic non-rigid image registration algorithm which mainly consists of three steps: To begin with, we introduce an automatic feature point extraction method based on non-linear scale space and uniform distribution strategy to extract the points which are uniform distributed along the edge of the image. Next, we propose a hybrid point matching algorithm using DaLI (Deformation and Light Invariant) descriptor and local affine invariant geometric constraint based on triangulation which is constructed by K-nearest neighbor algorithm. Based on the accurate homonymy point sets, the two images are registrated by the model of TPS (Thin Plate Spline). Our method is demonstrated by three deliberately designed experiments. The first two experiments are designed to evaluate the distribution of point set and the correctly matching rate on synthetic data and real data respectively. The last experiment is designed on the non-rigid deformation remote sensing images and the three experimental results demonstrate the accuracy, robustness, and efficiency of the proposed algorithm compared with other traditional methods.

  9. Robust image registration using adaptive coherent point drift method

    Science.gov (United States)

    Yang, Lijuan; Tian, Zheng; Zhao, Wei; Wen, Jinhuan; Yan, Weidong

    2016-04-01

    Coherent point drift (CPD) method is a powerful registration tool under the framework of the Gaussian mixture model (GMM). However, the global spatial structure of point sets is considered only without other forms of additional attribute information. The equivalent simplification of mixing parameters and the manual setting of the weight parameter in GMM make the CPD method less robust to outlier and have less flexibility. An adaptive CPD method is proposed to automatically determine the mixing parameters by embedding the local attribute information of features into the construction of GMM. In addition, the weight parameter is treated as an unknown parameter and automatically determined in the expectation-maximization algorithm. In image registration applications, the block-divided salient image disk extraction method is designed to detect sparse salient image features and local self-similarity is used as attribute information to describe the local neighborhood structure of each feature. The experimental results on optical images and remote sensing images show that the proposed method can significantly improve the matching performance.

  10. [A method for the medical image registration based on the statistics samples averaging distribution theory].

    Science.gov (United States)

    Xu, Peng; Yao, Dezhong; Luo, Fen

    2005-08-01

    The registration method based on mutual information is currently a popular technique for the medical image registration, but the computation for the mutual information is complex and the registration speed is slow. In engineering process, a subsampling technique is taken to accelerate the registration speed at the cost of registration accuracy. In this paper a new method based on statistics sample theory is developed, which has both a higher speed and a higher accuracy as compared with the normal subsampling method, and the simulation results confirm the validity of the new method.

  11. Fast pixel-wise adaptive visual tracking of non-rigid objects.

    Science.gov (United States)

    Duffner, Stefan; Garcia, Christophe

    2017-03-01

    In this paper, we present a new algorithm for realtime single-object tracking in videos in unconstrained environments. The algorithm comprises two different components that are trained "in one shot" at the first video frame: a detector that makes use of the generalised Hough transform with colour and gradient descriptors, and a probabilistic segmentation method based on global models for foreground and background colour distributions. Both components work at pixel level and are used for tracking in a combined way adapting each other in a cotraining manner. Moreover, we propose an adaptive shape model as well as a new probabilistic method for updating the scale of the tracker. Through effective model adaptation and segmentation, the algorithm is able to track objects that undergo rigid and non-rigid deformations and considerable shape and appearance variations. The proposed tracking method has been thoroughly evaluated on challenging benchmarks, and outperforms state-ofthe- art tracking methods designed for the same task. Finally, a very efficient implementation of the proposed models allows for extremely fast tracking.

  12. Evaluation of Registration Methods on Thoracic CT : The EMPIRE10 Challenge

    NARCIS (Netherlands)

    Murphy, Keelin; van Ginneken, Bram; Reinhardt, Joseph M.; Kabus, Sven; Ding, Kai; Deng, Xiang; Cao, Kunlin; Du, Kaifang; Christensen, Gary E.; Garcia, Vincent; Vercauteren, Tom; Ayache, Nicholas; Commowick, Olivier; Malandain, Gregoire; Glocker, Ben; Paragios, Nikos; Navab, Nassir; Gorbunova, Vladlena; Sporring, Jon; de Bruijne, Marleen; Han, Xiao; Heinrich, Mattias P.; Schnabel, Julia A.; Jenkinson, Mark; Lorenz, Cristian; Modat, Marc; McClelland, Jamie R.; Ourselin, Sebastien; Muenzing, Sascha E. A.; Viergever, Max A.; De Nigris, Dante; Collins, D. Louis; Arbel, Tal; Peroni, Marta; Li, Rui; Sharp, Gregory C.; Schmidt-Richberg, Alexander; Ehrhardt, Jan; Werner, Rene; Smeets, Dirk; Loeckx, Dirk; Song, Gang; Tustison, Nicholas; Avants, Brian; Gee, James C.; Staring, Marius; Klein, Stefan; Stoel, Berend C.; Urschler, Martin; Werlberger, Manuel; Vandemeulebroucke, Jef; Rit, Simon; Sarrut, David; Pluim, Josien P. W.

    2011-01-01

    EMPIRE10 (Evaluation of Methods for Pulmonary Image REgistration 2010) is a public platform for fair and meaningful comparison of registration algorithms which are applied to a database of intrapatient thoracic CT image pairs. Evaluation of nonrigid registration techniques is a nontrivial task. This

  13. Registration Method for CT-MR Image Based on Mutual Information

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    Medical image registration is important in many medical applications. Registration method based on maximization of mutual information of voxel intensities is one of the most popular methods for 3-D multi-modality medical image registration. Generally, the optimization process is easily trapped in local maximum, resulting in wrong registration results. In order to find the correct optimum, a new multi-resolution approach for brain image registration based on normalized mutual information is proposed. In this method, to eliminate the effect of local optima, multi-scale wavelet transformation is adopted to extract the image edge features. Then the feature images are registered,and the result at this level is taken as the initial estimate for the registration of the original images.Three-dimensional volumes are used to test the algorithm. Experimental results show that the registration strategy proposed is a robust and efficient method which can reach sub-voxel accuracy and improve the optimization speed.

  14. SU-E-J-196: New Visualization Methods for Longitudinal MRI Registrations and Segmentations

    Energy Technology Data Exchange (ETDEWEB)

    Veeraraghavan, H; Deasy, J [Memorial Sloan Kettering Cancer Center, NY, NY (United States)

    2014-06-01

    Purpose: To develop visualization techniques to facilitate easy assessment of (a) registration and (b) tracking volumetric changes in structures during radiation therapy from MRI. Method: The frequently used method for visualizing registrations between scans is a multi-color overlay technique or deformation vector fields. However, the overlay technique is unintuitive and does not help to appreciate the quality of registration particularly when the registration mismatches are not very large. Similarly, the deformation fields give an indication of extent of deformation but do not help to assess the differences in registration. We present a mirroring and edge-augmented mirroring technique that places the fixed and moving image next to each other and allows the user to quickly assess the small differences in registration. Next, we present a volumetric intersection based 3D model to visualize the changes in diseased lymph node volumes in head and neck cancer. 3D model-based visualization provides more information about the location-specific changes in volume rather than the simplistic one dimensional information obtained from 2D plot of nodal volume changes. Result: We show results comparing our approach with the standard colorbased overlay method for comparing registrations of intra-patient registrations using T2-MRI. Upon comparing the mirroring technique with the color-overlay, one can more easily appreciate the differences in registration. Adding edge-based mirroring seems to further assist in evaluating the registration. Our approach for viewing registrations seems to be more intuitive and easy to use in order to help assess the quality of registration compared to color-based overlays. Similarly, the change volumetric model together with a 2D plot reveals more information including the locations undergoing changes and responding to treatment. Conclusions: Better approaches are necessary for assessing the quality of registrations and changes in diseased structures

  15. Active zone impact on deformation state of non-rigid pavement

    Science.gov (United States)

    Mandula, Ján

    2014-06-01

    The paper deals with the design of non-rigid pavement, with emphasis on the effect of active zone on its deformation state. The concepts of determination of active zone are described. The results of numerical modelling of pavement laying on elastic subgrade are presented in the paper

  16. Active zone impact on deformation state of non-rigid pavement

    Directory of Open Access Journals (Sweden)

    Mandula Ján

    2014-06-01

    Full Text Available The paper deals with the design of non-rigid pavement, with emphasis on the effect of active zone on its deformation state. The concepts of determination of active zone are described. The results of numerical modelling of pavement laying on elastic subgrade are presented in the paper

  17. SU-E-J-209: Verification of 3D Surface Registration Between Stereograms and CT Images

    Energy Technology Data Exchange (ETDEWEB)

    Han, T; Gifford, K [UT MD Anderson Cancer Center, Houston, TX (United States); Smith, B [MD Anderson Cancer Center, Houston, TX (United States); Salehpour, M [M.D. Anderson Cancer Center, Houston, TX (United States)

    2014-06-01

    Purpose: Stereography can provide a visualization of the skin surface for radiation therapy patients. The aim of this study was to verify the registration algorithm in a commercial image analysis software, 3dMDVultus, for the fusion of stereograms and CT images. Methods: CT and stereographic scans were acquired of a head phantom and a deformable phantom. CT images were imported in 3dMDVultus and the surface contours were generated by threshold segmentation. Stereograms were reconstructed in 3dMDVultus. The resulting surfaces were registered with Vultus algorithm and then exported to in-house registration software and compared with four algorithms: rigid, affine, non-rigid iterative closest point (ICP) and b-spline algorithm. RMS (root-mean-square residuals of the surface point distances) error between the registered CT and stereogram surfaces was calculated and analyzed. Results: For the head phantom, the maximum RMS error between registered CT surfaces to stereogram was 6.6 mm for Vultus algorithm, whereas the mean RMS error was 0.7 mm. For the deformable phantom, the maximum RMS error was 16.2 mm for Vultus algorithm, whereas the mean RMS error was 4.4 mm. Non-rigid ICP demonstrated the best registration accuracy, as the mean of RMS errors were both within 1 mm. Conclusion: The accuracy of registration algorithm in 3dMDVultus was verified and exceeded RMS of 2 mm for deformable cases. Non-rigid ICP and b-spline algorithms improve the registration accuracy for both phantoms, especially in deformable one. For those patients whose body habitus deforms during radiation therapy, more advanced nonrigid algorithms need to be used.

  18. Deformable Registration of Digital Images

    Institute of Scientific and Technical Information of China (English)

    管伟光; 解林; 等

    1998-01-01

    is paper proposes a novel elastic model and presents a deformable registration method based on the model.The method registers images without the need to extract reatures from the images,and therefore works directly on grey-level images.A new similarity metric is given on which the formation of external forces is based.The registration method,taking the coarse-to-fine strategy,constructs external forces in larger scales for the first few iterations to rely more on global evidence,and ther in smaller scales for later iterations to allow local refinements.The stiffness of the elastic body decreases as the process proceeds.To make it widely applicable,the method is not restricted to any type of transformation.The variations between images are thought as general free-form deformations.Because the elastic model designed is linearized,it can be solved very efficiently with high accuracy.The method has been successfully tested on MRI images.It will certainly find other uses such as matching time-varying sequences of pictures for motion analysis,fitting templates into images for non-rigid object recognition,matching stereo images for shape recovery,etc.

  19. Moving object detection by using GPS assisted image registration method

    Directory of Open Access Journals (Sweden)

    Barış Gökçe

    2016-10-01

    Full Text Available In this study, a Global Positioning System (GPS assistance based system has been developed for unmanned ground vehicles (UGV to detect moving objects along their route using a computer vision system. Before the real time application of the UGV, image models were created that represents a default background in specified horizontal positions of the specified coordinates on the route. This model is a type of feature matrix which is much smaller than the pure image matrices. The model matrices were recorded in the system database and a database relation was created between the model and its coordinate. The feature matrices of the images captured when the moment UGV arrived to the determined coordinates are compared with the models belong to present coordinate. As a result of the evaluation image frames are aligned with 2D image registration methods. The silhouettes of the objects are obtained by subtracting aligned frames. Thus, using this developed approach, there is no need for costly solutions to compensate for the noise generated by the moving camera. It was observed from the experiments that the system was able to detect the objects with 90% accuracy and it was able to run with 8% CPU loading and 0.057 s processing time per frame.

  20. 3D-2D registration of cerebral angiograms: a method and evaluation on clinical images.

    Science.gov (United States)

    Mitrovic, Uroš; Špiclin, Žiga; Likar, Boštjan; Pernuš, Franjo

    2013-08-01

    Endovascular image-guided interventions (EIGI) involve navigation of a catheter through the vasculature followed by application of treatment at the site of anomaly using live 2D projection images for guidance. 3D images acquired prior to EIGI are used to quantify the vascular anomaly and plan the intervention. If fused with the information of live 2D images they can also facilitate navigation and treatment. For this purpose 3D-2D image registration is required. Although several 3D-2D registration methods for EIGI achieve registration accuracy below 1 mm, their clinical application is still limited by insufficient robustness or reliability. In this paper, we propose a 3D-2D registration method based on matching a 3D vasculature model to intensity gradients of live 2D images. To objectively validate 3D-2D registration methods, we acquired a clinical image database of 10 patients undergoing cerebral EIGI and established "gold standard" registrations by aligning fiducial markers in 3D and 2D images. The proposed method had mean registration accuracy below 0.65 mm, which was comparable to tested state-of-the-art methods, and execution time below 1 s. With the highest rate of successful registrations and the highest capture range the proposed method was the most robust and thus a good candidate for application in EIGI.

  1. Data on the verification and validation of segmentation and registration methods for diffusion MRI

    Directory of Open Access Journals (Sweden)

    Oscar Esteban

    2016-09-01

    Full Text Available The verification and validation of segmentation and registration methods is a necessary assessment in the development of new processing methods. However, verification and validation of diffusion MRI (dMRI processing methods is challenging for the lack of gold-standard data. The data described here are related to the research article entitled “Surface-driven registration method for the structure-informed segmentation of diffusion MR images” [1], in which publicly available data are used to derive golden-standard reference-data to validate and evaluate segmentation and registration methods in dMRI.

  2. Q-Conjugacy character table for the non-rigid group of 2,3-dimethylbutane

    Directory of Open Access Journals (Sweden)

    MOHAMMAD REZA DARAFSHEH

    2009-01-01

    Full Text Available Maturated and unmaturated groups were introduced by the Japanese chemist Shinsaku Fujita, who used them in the markaracter table and the Q-conjugacy character table of a finite group. He then applied his results in this area of research to enumerate isomers of molecules. Using the non-rigid group theory, it was shown by the second author that the full non-rigid (f-NRG group of 2,3--dimethylbutane is isomorphic to the group (Z3×Z3×Z3×Z3:Z2 of order 162 with 54 conjugacy classes. Here (Z3×Z3×Z3×Z3:Z2 denotes the semi direct product of four copies of Z3 by Z2, where Zn is a cyclic group of order n. In this paper, it is shown with the GAP program that this group has 30 dominant classes (similarly, Q-conjugacy characters and that 24 of them are unmatured (similarly, Q-conjugacy characters such that they are the sum of two irreducible characters. Then, the Q-conjugacy character table of the unmatured full non-rigid group 2,3-dimethylbutane is derived.

  3. Efficient point cloud data processing in shipbuilding: Reformative component extraction method and registration method

    Directory of Open Access Journals (Sweden)

    Jingyu Sun

    2014-07-01

    Full Text Available To survive in the current shipbuilding industry, it is of vital importance for shipyards to have the ship components’ accuracy evaluated efficiently during most of the manufacturing steps. Evaluating components’ accuracy by comparing each component’s point cloud data scanned by laser scanners and the ship’s design data formatted in CAD cannot be processed efficiently when (1 extract components from point cloud data include irregular obstacles endogenously, or when (2 registration of the two data sets have no clear direction setting. This paper presents reformative point cloud data processing methods to solve these problems. K-d tree construction of the point cloud data fastens a neighbor searching of each point. Region growing method performed on the neighbor points of the seed point extracts the continuous part of the component, while curved surface fitting and B-spline curved line fitting at the edge of the continuous part recognize the neighbor domains of the same component divided by obstacles’ shadows. The ICP (Iterative Closest Point algorithm conducts a registration of the two sets of data after the proper registration’s direction is decided by principal component analysis. By experiments conducted at the shipyard, 200 curved shell plates are extracted from the scanned point cloud data, and registrations are conducted between them and the designed CAD data using the proposed methods for an accuracy evaluation. Results show that the methods proposed in this paper support the accuracy evaluation targeted point cloud data processing efficiently in practice.

  4. A Robust and Accurate Two-Step Auto-Labeling Conditional Iterative Closest Points (TACICP Algorithm for Three-Dimensional Multi-Modal Carotid Image Registration.

    Directory of Open Access Journals (Sweden)

    Hengkai Guo

    Full Text Available Atherosclerosis is among the leading causes of death and disability. Combining information from multi-modal vascular images is an effective and efficient way to diagnose and monitor atherosclerosis, in which image registration is a key technique. In this paper a feature-based registration algorithm, Two-step Auto-labeling Conditional Iterative Closed Points (TACICP algorithm, is proposed to align three-dimensional carotid image datasets from ultrasound (US and magnetic resonance (MR. Based on 2D segmented contours, a coarse-to-fine strategy is employed with two steps: rigid initialization step and non-rigid refinement step. Conditional Iterative Closest Points (CICP algorithm is given in rigid initialization step to obtain the robust rigid transformation and label configurations. Then the labels and CICP algorithm with non-rigid thin-plate-spline (TPS transformation model is introduced to solve non-rigid carotid deformation between different body positions. The results demonstrate that proposed TACICP algorithm has achieved an average registration error of less than 0.2mm with no failure case, which is superior to the state-of-the-art feature-based methods.

  5. Non-rigid alignment of pre-operative MRI, fMRI, and DT-MRI with intra-operative MRI for enhanced visualization and navigation in image-guided neurosurgery.

    Science.gov (United States)

    Archip, Neculai; Clatz, Olivier; Whalen, Stephen; Kacher, Dan; Fedorov, Andriy; Kot, Andriy; Chrisochoides, Nikos; Jolesz, Ferenc; Golby, Alexandra; Black, Peter M; Warfield, Simon K

    2007-04-01

    The usefulness of neurosurgical navigation with current visualizations is seriously compromised by brain shift, which inevitably occurs during the course of the operation, significantly degrading the precise alignment between the pre-operative MR data and the intra-operative shape of the brain. Our objectives were (i) to evaluate the feasibility of non-rigid registration that compensates for the brain deformations within the time constraints imposed by neurosurgery, and (ii) to create augmented reality visualizations of critical structural and functional brain regions during neurosurgery using pre-operatively acquired fMRI and DT-MRI. Eleven consecutive patients with supratentorial gliomas were included in our study. All underwent surgery at our intra-operative MR imaging-guided therapy facility and have tumors in eloquent brain areas (e.g. precentral gyrus and cortico-spinal tract). Functional MRI and DT-MRI, together with MPRAGE and T2w structural MRI were acquired at 3 T prior to surgery. SPGR and T2w images were acquired with a 0.5 T magnet during each procedure. Quantitative assessment of the alignment accuracy was carried out and compared with current state-of-the-art systems based only on rigid registration. Alignment between pre-operative and intra-operative datasets was successfully carried out during surgery for all patients. Overall, the mean residual displacement remaining after non-rigid registration was 1.82 mm. There is a statistically significant improvement in alignment accuracy utilizing our non-rigid registration in comparison to the currently used technology (paugmented reality visualization to aid the surgeon.

  6. Flexible model and spectrum of non-rigid motion in LMF4 fluorides

    Science.gov (United States)

    Baranov, L. Ya.; Boldyrev, A. I.

    A flexible model is used to simulate the spectrum of the non-rigid motion in the LiBF4 molecule. It is shown that there are many states having energies below the barrier of rearrangement which can be regarded as anharmonic bending vibrations. A one-well representation of the potential energy surface appears to be a fairly good approximation for describing this part of the spectrum. The tunnelling splittings at these levels are extremely small. At energies above the barrier the level pattern changes radically and highly excited states should be regarded as intramolecular hindered rotation. Differences between the spectra of LMH4 hydrides and LMF4 fluorides are discussed.

  7. List-mode-based reconstruction for respiratory motion correction in PET using non-rigid body transformations

    Energy Technology Data Exchange (ETDEWEB)

    Lamare, F [INSERM, U650, Laboratoire du Traitement de l' Information Medicale (LaTIM), Brest, F-29200 (France); Carbayo, M J Ledesma [ETSI Telecomunicacion Universidad Politecnica de Madrid, Ciudad Universitaria s/n 28040, Madrid (Spain); Cresson, T [INSERM, U650, Laboratoire du Traitement de l' Information Medicale (LaTIM), Brest, F-29200 (France); Kontaxakis, G [ETSI Telecomunicacion Universidad Politecnica de Madrid, Ciudad Universitaria s/n 28040, Madrid (Spain); Santos, A [ETSI Telecomunicacion Universidad Politecnica de Madrid, Ciudad Universitaria s/n 28040, Madrid (Spain); Rest, C Cheze Le [INSERM, U650, Laboratoire du Traitement de l' Information Medicale (LaTIM), Brest, F-29200 (France); Reader, A J [School of Chemical Engineering and Analytical Science, University of Manchester, Manchester (United Kingdom); Visvikis, D [INSERM, U650, Laboratoire du Traitement de l' Information Medicale (LaTIM), Brest, F-29200 (France)

    2007-09-07

    Respiratory motion in emission tomography leads to reduced image quality. Developed correction methodology has been concentrating on the use of respiratory synchronized acquisitions leading to gated frames. Such frames, however, are of low signal-to-noise ratio as a result of containing reduced statistics. In this work, we describe the implementation of an elastic transformation within a list-mode-based reconstruction for the correction of respiratory motion over the thorax, allowing the use of all data available throughout a respiratory motion average acquisition. The developed algorithm was evaluated using datasets of the NCAT phantom generated at different points throughout the respiratory cycle. List-mode-data-based PET-simulated frames were subsequently produced by combining the NCAT datasets with Monte Carlo simulation. A non-rigid registration algorithm based on B-spline basis functions was employed to derive transformation parameters accounting for the respiratory motion using the NCAT dynamic CT images. The displacement matrices derived were subsequently applied during the image reconstruction of the original emission list mode data. Two different implementations for the incorporation of the elastic transformations within the one-pass list mode EM (OPL-EM) algorithm were developed and evaluated. The corrected images were compared with those produced using an affine transformation of list mode data prior to reconstruction, as well as with uncorrected respiratory motion average images. Results demonstrate that although both correction techniques considered lead to significant improvements in accounting for respiratory motion artefacts in the lung fields, the elastic-transformation-based correction leads to a more uniform improvement across the lungs for different lesion sizes and locations.

  8. Robust methods for automatic image-to-world registration in cone-beam CT interventional guidance

    Energy Technology Data Exchange (ETDEWEB)

    Dang, H.; Otake, Y.; Schafer, S.; Stayman, J. W.; Kleinszig, G.; Siewerdsen, J. H. [Department of Biomedical Engineering, Johns Hopkins University, Baltimore, Maryland 21202 (United States); Siemens Healthcare XP Division, Erlangen 91052 (Germany); Department of Biomedical Engineering, Johns Hopkins University, Baltimore, Maryland 21202 (United States)

    2012-10-15

    Purpose: Real-time surgical navigation relies on accurate image-to-world registration to align the coordinate systems of the image and patient. Conventional manual registration can present a workflow bottleneck and is prone to manual error and intraoperator variability. This work reports alternative means of automatic image-to-world registration, each method involving an automatic registration marker (ARM) used in conjunction with C-arm cone-beam CT (CBCT). The first involves a Known-Model registration method in which the ARM is a predefined tool, and the second is a Free-Form method in which the ARM is freely configurable. Methods: Studies were performed using a prototype C-arm for CBCT and a surgical tracking system. A simple ARM was designed with markers comprising a tungsten sphere within infrared reflectors to permit detection of markers in both x-ray projections and by an infrared tracker. The Known-Model method exercised a predefined specification of the ARM in combination with 3D-2D registration to estimate the transformation that yields the optimal match between forward projection of the ARM and the measured projection images. The Free-Form method localizes markers individually in projection data by a robust Hough transform approach extended from previous work, backprojected to 3D image coordinates based on C-arm geometric calibration. Image-domain point sets were transformed to world coordinates by rigid-body point-based registration. The robustness and registration accuracy of each method was tested in comparison to manual registration across a range of body sites (head, thorax, and abdomen) of interest in CBCT-guided surgery, including cases with interventional tools in the radiographic scene. Results: The automatic methods exhibited similar target registration error (TRE) and were comparable or superior to manual registration for placement of the ARM within {approx}200 mm of C-arm isocenter. Marker localization in projection data was robust across all

  9. Self-Registration Methods for Increasing Membrane Utilization within Compression-Sealed Microchannel Hemodialysers.

    Science.gov (United States)

    Paul, Brian K; Porter, Spencer D

    2014-10-01

    More than 1.2 million people worldwide require regular hemodialysis therapy to treat end stage renal failure. Current hemodialysis systems are too expensive to support at-home hemodialysis where more frequent and longer duration treatment can lead to better patient outcomes. The key cost driver for hemodialysers is the cost of the hemodialysis membrane. Microchannel hemodialysers are smaller providing the potential to use significantly less membrane. Prior work has demonstrated the use of sealing bosses to form compression seals in microchannel hemodialysers. In this paper, estimates show that the percentage of the membrane utilized for mass transfer is highly dependent on the design and registration accuracy of adjacent blood and dialysate laminae. Efforts here focus on the development of a self-registration method to align polycarbonate laminae compatible with compression sealing schemes for membrane separation applications. Self-nesting registration methods were demonstrated with average registration accuracies of 11.4 ± 7.2 μm measured over a 50 mm scale. Analysis shows that the registration accuracy is constrained by tolerances in the embossing process. A dialysis test article was produced using the self-nesting registration method showing a measured average one-dimensional misregistration of 18.5 μm allowing a potential 41.4% of the membrane to be utilized for mass transfer when considering both microchannel and header regions. Mass transfer results provide evidence of a twofold to threefold increase in membrane utilization over other designs in the existing literature.

  10. The heritability of the functional connectome is robust to common nonlinear registration methods

    Science.gov (United States)

    Hafzalla, George W.; Prasad, Gautam; Baboyan, Vatche G.; Faskowitz, Joshua; Jahanshad, Neda; McMahon, Katie L.; de Zubicaray, Greig I.; Wright, Margaret J.; Braskie, Meredith N.; Thompson, Paul M.

    2016-03-01

    Nonlinear registration algorithms are routinely used in brain imaging, to align data for inter-subject and group comparisons, and for voxelwise statistical analyses. To understand how the choice of registration method affects maps of functional brain connectivity in a sample of 611 twins, we evaluated three popular nonlinear registration methods: Advanced Normalization Tools (ANTs), Automatic Registration Toolbox (ART), and FMRIB's Nonlinear Image Registration Tool (FNIRT). Using both structural and functional MRI, we used each of the three methods to align the MNI152 brain template, and 80 regions of interest (ROIs), to each subject's T1-weighted (T1w) anatomical image. We then transformed each subject's ROIs onto the associated resting state functional MRI (rs-fMRI) scans and computed a connectivity network or functional connectome for each subject. Given the different degrees of genetic similarity between pairs of monozygotic (MZ) and same-sex dizygotic (DZ) twins, we used structural equation modeling to estimate the additive genetic influences on the elements of the function networks, or their heritability. The functional connectome and derived statistics were relatively robust to nonlinear registration effects.

  11. Non-rigid Motion Correction in 3D Using Autofocusing with Localized Linear Translations

    Science.gov (United States)

    Cheng, Joseph Y.; Alley, Marcus T.; Cunningham, Charles H.; Vasanawala, Shreyas S.; Pauly, John M.; Lustig, Michael

    2012-01-01

    MR scans are sensitive to motion effects due to the scan duration. To properly suppress artifacts from non-rigid body motion, complex models with elements such as translation, rotation, shear, and scaling have been incorporated into the reconstruction pipeline. However, these techniques are computationally intensive and difficult to implement for online reconstruction. On a sufficiently small spatial scale, the different types of motion can be well-approximated as simple linear translations. This formulation allows for a practical autofocusing algorithm that locally minimizes a given motion metric – more specifically, the proposed localized gradient-entropy metric. To reduce the vast search space for an optimal solution, possible motion paths are limited to the motion measured from multi-channel navigator data. The novel navigation strategy is based on the so-called “Butterfly” navigators which are modifications to the spin-warp sequence that provide intrinsic translational motion information with negligible overhead. With a 32-channel abdominal coil, sufficient number of motion measurements were found to approximate possible linear motion paths for every image voxel. The correction scheme was applied to free-breathing abdominal patient studies. In these scans, a reduction in artifacts from complex, non-rigid motion was observed. PMID:22307933

  12. Understanding geological processes: Visualization of rigid and non-rigid transformations

    Science.gov (United States)

    Shipley, T. F.; Atit, K.; Manduca, C. A.; Ormand, C. J.; Resnick, I.; Tikoff, B.

    2012-12-01

    Visualizations are used in the geological sciences to support reasoning about structures and events. Research in cognitive sciences offers insights into the range of skills of different users, and ultimately how visualizations might support different users. To understand the range of skills needed to reason about earth processes we have developed a program of research that is grounded in the geosciences' careful description of the spatial and spatiotemporal patterns associated with earth processes. In particular, we are pursuing a research program that identifies specific spatial skills and investigates whether and how they are related to each other. For this study, we focus on a specific question: Is there an important distinction in the geosciences between rigid and non-rigid deformation? To study a general spatial thinking skill we employed displays with non-geological objects that had been altered by rigid change (rotation), and two types of non-rigid change ("brittle" (or discontinuous) and "ductile" (or continuous) deformation). Disciplinary scientists (geosciences and chemistry faculty), and novices (non-science faculty and undergraduate psychology students) answered questions that required them to visualize the appearance of the object before the change. In one study, geologists and chemists were found to be superior to non-science faculty in reasoning about rigid rotations (e.g., what an object would look like from a different perspective). Geologists were superior to chemists in reasoning about brittle deformations (e.g., what an object looked like before it was broken - here the object was a word cut into many fragments displaced in different directions). This finding is consistent with two hypotheses: 1) Experts are good at visualizing the types of changes required for their domain; and 2) Visualization of rigid and non-rigid changes are not the same skill. An additional important finding is that there was a broad range of skill in both rigid and non-rigid

  13. PARALLEL AND ADAPTIVE UNIFORM-DISTRIBUTED REGISTRATION METHOD FOR CHANG’E-1 LUNAR REMOTE SENSED IMAGERY

    Directory of Open Access Journals (Sweden)

    X. Ning

    2012-08-01

    To resolve the above-mentioned registration difficulties, a parallel and adaptive uniform-distributed registration method for CE-1 lunar remote sensed imagery is proposed in this paper. Based on 6 pairs of randomly selected images, both the standard SIFT algorithm and the parallel and adaptive uniform-distributed registration method were executed, the versatility and effectiveness were assessed. The experimental results indicate that: by applying the parallel and adaptive uniform-distributed registration method, the efficiency of CE-1 lunar remote sensed imagery registration were increased dramatically. Therefore, the proposed method in the paper could acquire uniform-distributed registration results more effectively, the registration difficulties including difficult to obtain results, time-consuming, non-uniform distribution could be successfully solved.

  14. A Finger Vein Recognition Method Using Improved Oriented Filter and Elastic Registration

    Directory of Open Access Journals (Sweden)

    Ma Hui

    2013-07-01

    Full Text Available In order to reduce the influence of relative position deviation and angle deviation between minutia point sets caused by external factors when finger vein images are obtained, a finger vein recognition method using elastic registration is presented. The proposed algorithm is based on an improved neighborhood direction template and oriented filter template which facilitates the enhancement of the finger vein image while taking full account of image orientation. Elastic registration is then applied to matching of feature points within the predefined angle and radius. Applying the idea of elastic registration to existing finger vein recognition method removes the need for perfect matching between corresponding feature points and has shown to be an effective method for dealing with the problem of nonlinear distortion of images. Experimental results show that this algorithm not only overcomes the limitations of traditional point matching method, but also effectively improves the recognition performance of the system.

  15. A batch Algorithm for Implicit Non-Rigid Shape and Motion Recovery

    DEFF Research Database (Denmark)

    Bartoli, Adrien; Olsen, Søren Ingvor

    2005-01-01

    manner. There are several issues that have not been addressed yet, among which, choosing the rank automatically and dealing with erroneous point tracks and missing data. We introduce theoretical and practical contributions that address these issues. We propose an implicit imaging model for non......The recovery of 3D shape and camera motion for non-rigid scenes from single-camera video footage is a very important problem in computer vision. The low-rank shape model consists in regarding the deformations as linear combinations of basis shapes. Most algorithms for reconstructing the parameters...... of the subsequence, using a robust estimator incorporating a model selection criterion that detects erroneous image points. Preliminary experimental results on real and simulated data show that our algorithm deals with challenging video sequences....

  16. Registering prostate external beam radiotherapy with a boost from high-dose-rate brachytherapy: a comparative evaluation of deformable registration algorithms.

    Science.gov (United States)

    Moulton, Calyn R; House, Michael J; Lye, Victoria; Tang, Colin I; Krawiec, Michele; Joseph, David J; Denham, James W; Ebert, Martin A

    2015-12-14

    Registering CTs for patients receiving external beam radiotherapy (EBRT) with a boost dose from high-dose-rate brachytherapy (HDR) can be challenging due to considerable image discrepancies (e.g. rectal fillings, HDR needles, HDR artefacts and HDR rectal packing materials). This study is the first to comparatively evaluate image processing and registration methods used to register the rectums in EBRT and HDR CTs of prostate cancer patients. The focus is on the rectum due to planned future analysis of rectal dose-volume response. For 64 patients, the EBRT CT was retrospectively registered to the HDR CT with rigid registration and non-rigid registration methods in VelocityAI. Image processing was undertaken on the HDR CT and the rigidly-registered EBRT CT to reduce the impact of discriminating features on alternative non-rigid registration methods applied in the software suite for Deformable Image Registration and Adaptive Radiotherapy Research (DIRART) using the Horn-Schunck optical flow and Demons algorithms. The propagated EBRT-rectum structures were compared with the HDR structure using the Dice similarity coefficient (DSC), Hausdorff distance (HD) and average surface distance (ASD). The image similarity was compared using mutual information (MI) and root mean squared error (MSE). The displacement vector field was assessed via the Jacobian determinant (JAC). The post-registration alignments of rectums for 21 patients were visually assessed. The greatest improvement in the median DSC relative to the rigid registration result was 35 % for the Horn-Schunck algorithm with image processing. This algorithm also provided the best ASD results. The VelocityAI algorithms provided superior HD, MI, MSE and JAC results. The visual assessment indicated that the rigid plus deformable multi-pass method within VelocityAI resulted in the best rectum alignment. The DSC, ASD and HD improved significantly relative to the rigid registration result if image processing was applied prior

  17. A Surface-Based Spatial Registration Method Based on Sense Three-Dimensional Scanner.

    Science.gov (United States)

    Fan, Yifeng; Xu, Xiufang; Wang, Manning

    2017-01-01

    The purpose of this study was to investigate the feasibility of a surface-based registration method based on a low-cost, hand-held Sense three-dimensional (3D) scanner in image-guided neurosurgery system. The scanner was calibrated prior and fixed on a tripod before registration. During registration, a part of the head surface was scanned at first and the spatial position of the adapter was recorded. Then the scanner was taken off from the tripod and the entire head surface was scanned by moving the scanner around the patient's head. All the scan points were aligned to the recorded spatial position to form a unique point cloud of the head by the automatic mosaic function of the scanner. The coordinates of the scan points were transformed from the device space to the adapter space by a calibration matrix, and then to the patient space. A 2-step patient-to-image registration method was then performed to register the patient space to the image space. The experimental results showed that the mean target registration error of 15 targets on the surface of the phantom was 1.61±0.09 mm. In a clinical experiment, the mean target registration error of 7 targets on the patient's head surface was 2.50±0.31 mm, which was sufficient to meet clinical requirements. It is feasible to use the Sense 3D scanner for patient-to-image registration, and the low-cost Sense 3D scanner can take the place of the current used scanner in the image-guided neurosurgery system.

  18. Experiences in determination of non-rigid body motion in industrial environment using low-cost photogrammetry

    Science.gov (United States)

    Rupnik, Ewelina; Jansa, Josef

    2013-04-01

    Central to our investigation is determination of dynamic behaviour of a highly reflective platform floating on water, as well as derivation of parameters defining instantaneous water state. The employed imaging setup consists of three off-the-shelf dSLR cameras capable of video recording at a 30Hz frame rate. In order to observe a change, the non-rigid and non-diffuse bodies impose the adoption of artificial targetting and custom measurement algorithms. Attention will be given to an in-house software tool implemented to carry out point measurement, correspondence search, tracking and outlier detection methods in the presence of specular reflections and a multimedia scene. A methodology for retrieval of wave parameters in regular wave conditions is also automatically handled by the software and will be discussed. In the context of performed measurements and achieved results, we will point out the extent to which consumer grade camera can fulfil automation and accuracy demands of industrial applications and the pitfalls entailed. Lastly, we will elaborate on visual representation of computed motion and deformations.

  19. Numerical calculation of the stress-strain state of non-rigid pavements, renovated by cold recycling technology

    Directory of Open Access Journals (Sweden)

    Світлана Михайлівна Талах

    2017-01-01

    Full Text Available The problem of improving the scientific basis to determine the stress-strain state of non-rigid pavements, renovated by cold recycling technology, is considered. The results of numerical calculation of stress-strain state of non-rigid pavements in the section of road Kyv-Kovel (297 + 700 km - 302 + 400 km are given using automated calculation software complex of thin-walled spatial structures (KARTPK. The real state of the road section through 8.5 years after the renovation is analyzed

  20. Monitoring Cataract Surgical Outcomes: 'Hand Written' Registration Method

    Directory of Open Access Journals (Sweden)

    Colin Cook

    2002-01-01

    Full Text Available The purpose of this hand written method of monitoring cataract surgery outcomes is to provide a practical method, assisting cataract surgeons and programme managers to monitor qualitatively the results of their cataract surgery. Such monitoring is the key to improving the quality and results of our cataract surgery.The hand registered method is quick, simple, and friendly to use!

  1. TU-CD-BRA-01: A Novel 3D Registration Method for Multiparametric Radiological Images

    Energy Technology Data Exchange (ETDEWEB)

    Akhbardeh, A [The Russell H. Morgan Department of Radiology and Radiological Sciences, The Johns Hopkins University School of Medicine, Baltimore, MD (United States); Parekth, VS [Department of Computer Science, The Johns Hopkins University, Baltimore, MD (United States); Jacobs, MA [The Russell H. Morgan Department of Radiology and Radiological Sciences and Sidney Kimmel Comprehensive Cancer Center, The Johns Hopkins University School of Medicine, Sparks, MD (United States)

    2015-06-15

    Purpose: Multiparametric and multimodality radiological imaging methods, such as, magnetic resonance imaging(MRI), computed tomography(CT), and positron emission tomography(PET), provide multiple types of tissue contrast and anatomical information for clinical diagnosis. However, these radiological modalities are acquired using very different technical parameters, e.g.,field of view(FOV), matrix size, and scan planes, which, can lead to challenges in registering the different data sets. Therefore, we developed a hybrid registration method based on 3D wavelet transformation and 3D interpolations that performs 3D resampling and rotation of the target radiological images without loss of information Methods: T1-weighted, T2-weighted, diffusion-weighted-imaging(DWI), dynamic-contrast-enhanced(DCE) MRI and PET/CT were used in the registration algorithm from breast and prostate data at 3T MRI and multimodality(PET/CT) cases. The hybrid registration scheme consists of several steps to reslice and match each modality using a combination of 3D wavelets, interpolations, and affine registration steps. First, orthogonal reslicing is performed to equalize FOV, matrix sizes and the number of slices using wavelet transformation. Second, angular resampling of the target data is performed to match the reference data. Finally, using optimized angles from resampling, 3D registration is performed using similarity transformation(scaling and translation) between the reference and resliced target volume is performed. After registration, the mean-square-error(MSE) and Dice Similarity(DS) between the reference and registered target volumes were calculated. Results: The 3D registration method registered synthetic and clinical data with significant improvement(p<0.05) of overlap between anatomical structures. After transforming and deforming the synthetic data, the MSE and Dice similarity were 0.12 and 0.99. The average improvement of the MSE in breast was 62%(0.27 to 0.10) and prostate was

  2. 3D Visual Data-Driven Spatiotemporal Deformations for Non-Rigid Object Grasping Using Robot Hands

    Science.gov (United States)

    Mateo, Carlos M.; Gil, Pablo; Torres, Fernando

    2016-01-01

    Sensing techniques are important for solving problems of uncertainty inherent to intelligent grasping tasks. The main goal here is to present a visual sensing system based on range imaging technology for robot manipulation of non-rigid objects. Our proposal provides a suitable visual perception system of complex grasping tasks to support a robot controller when other sensor systems, such as tactile and force, are not able to obtain useful data relevant to the grasping manipulation task. In particular, a new visual approach based on RGBD data was implemented to help a robot controller carry out intelligent manipulation tasks with flexible objects. The proposed method supervises the interaction between the grasped object and the robot hand in order to avoid poor contact between the fingertips and an object when there is neither force nor pressure data. This new approach is also used to measure changes to the shape of an object’s surfaces and so allows us to find deformations caused by inappropriate pressure being applied by the hand’s fingers. Test was carried out for grasping tasks involving several flexible household objects with a multi-fingered robot hand working in real time. Our approach generates pulses from the deformation detection method and sends an event message to the robot controller when surface deformation is detected. In comparison with other methods, the obtained results reveal that our visual pipeline does not use deformations models of objects and materials, as well as the approach works well both planar and 3D household objects in real time. In addition, our method does not depend on the pose of the robot hand because the location of the reference system is computed from a recognition process of a pattern located place at the robot forearm. The presented experiments demonstrate that the proposed method accomplishes a good monitoring of grasping task with several objects and different grasping configurations in indoor environments. PMID

  3. 3D Visual Data-Driven Spatiotemporal Deformations for Non-Rigid Object Grasping Using Robot Hands

    Directory of Open Access Journals (Sweden)

    Carlos M. Mateo

    2016-05-01

    Full Text Available Sensing techniques are important for solving problems of uncertainty inherent to intelligent grasping tasks. The main goal here is to present a visual sensing system based on range imaging technology for robot manipulation of non-rigid objects. Our proposal provides a suitable visual perception system of complex grasping tasks to support a robot controller when other sensor systems, such as tactile and force, are not able to obtain useful data relevant to the grasping manipulation task. In particular, a new visual approach based on RGBD data was implemented to help a robot controller carry out intelligent manipulation tasks with flexible objects. The proposed method supervises the interaction between the grasped object and the robot hand in order to avoid poor contact between the fingertips and an object when there is neither force nor pressure data. This new approach is also used to measure changes to the shape of an object’s surfaces and so allows us to find deformations caused by inappropriate pressure being applied by the hand’s fingers. Test was carried out for grasping tasks involving several flexible household objects with a multi-fingered robot hand working in real time. Our approach generates pulses from the deformation detection method and sends an event message to the robot controller when surface deformation is detected. In comparison with other methods, the obtained results reveal that our visual pipeline does not use deformations models of objects and materials, as well as the approach works well both planar and 3D household objects in real time. In addition, our method does not depend on the pose of the robot hand because the location of the reference system is computed from a recognition process of a pattern located place at the robot forearm. The presented experiments demonstrate that the proposed method accomplishes a good monitoring of grasping task with several objects and different grasping configurations in indoor

  4. 3D Visual Data-Driven Spatiotemporal Deformations for Non-Rigid Object Grasping Using Robot Hands.

    Science.gov (United States)

    Mateo, Carlos M; Gil, Pablo; Torres, Fernando

    2016-05-05

    Sensing techniques are important for solving problems of uncertainty inherent to intelligent grasping tasks. The main goal here is to present a visual sensing system based on range imaging technology for robot manipulation of non-rigid objects. Our proposal provides a suitable visual perception system of complex grasping tasks to support a robot controller when other sensor systems, such as tactile and force, are not able to obtain useful data relevant to the grasping manipulation task. In particular, a new visual approach based on RGBD data was implemented to help a robot controller carry out intelligent manipulation tasks with flexible objects. The proposed method supervises the interaction between the grasped object and the robot hand in order to avoid poor contact between the fingertips and an object when there is neither force nor pressure data. This new approach is also used to measure changes to the shape of an object's surfaces and so allows us to find deformations caused by inappropriate pressure being applied by the hand's fingers. Test was carried out for grasping tasks involving several flexible household objects with a multi-fingered robot hand working in real time. Our approach generates pulses from the deformation detection method and sends an event message to the robot controller when surface deformation is detected. In comparison with other methods, the obtained results reveal that our visual pipeline does not use deformations models of objects and materials, as well as the approach works well both planar and 3D household objects in real time. In addition, our method does not depend on the pose of the robot hand because the location of the reference system is computed from a recognition process of a pattern located place at the robot forearm. The presented experiments demonstrate that the proposed method accomplishes a good monitoring of grasping task with several objects and different grasping configurations in indoor environments.

  5. Hierarchical segmentation-assisted multimodal registration for MR brain images.

    Science.gov (United States)

    Lu, Huanxiang; Beisteiner, Roland; Nolte, Lutz-Peter; Reyes, Mauricio

    2013-04-01

    Information theory-based metric such as mutual information (MI) is widely used as similarity measurement for multimodal registration. Nevertheless, this metric may lead to matching ambiguity for non-rigid registration. Moreover, maximization of MI alone does not necessarily produce an optimal solution. In this paper, we propose a segmentation-assisted similarity metric based on point-wise mutual information (PMI). This similarity metric, termed SPMI, enhances the registration accuracy by considering tissue classification probabilities as prior information, which is generated from an expectation maximization (EM) algorithm. Diffeomorphic demons is then adopted as the registration model and is optimized in a hierarchical framework (H-SPMI) based on different levels of anatomical structure as prior knowledge. The proposed method is evaluated using Brainweb synthetic data and clinical fMRI images. Both qualitative and quantitative assessment were performed as well as a sensitivity analysis to the segmentation error. Compared to the pure intensity-based approaches which only maximize mutual information, we show that the proposed algorithm provides significantly better accuracy on both synthetic and clinical data.

  6. A MR-TRUS registration method for ultrasound-guided prostate interventions

    Science.gov (United States)

    Yang, Xiaofeng; Rossi, Peter; Mao, Hui; Jani, Ashesh B.; Ogunleye, Tomi; Curran, Walter J.; Liu, Tian

    2015-03-01

    In this paper, we reported a MR-TRUS prostate registration method that uses a subject-specific prostate strain model to improve MR-targeted, US-guided prostate interventions (e.g., biopsy and radiotherapy). The proposed algorithm combines a subject-specific prostate strain model with a Bspline transformation to register the prostate gland of the MRI to the TRUS images. The prostate strain model was obtained through US elastography and a 3D strain map of the prostate was generated. The B-spline transformation was calculated by minimizing Euclidean distance between MR and TRUS prostate surfaces. This prostate stain map was used to constrain the B-spline-based transformation to predict and compensate for the internal prostate-gland deformation. This method was validated with a prostate-phantom experiment and a pilot study of 5 prostate-cancer patients. For the phantom study, the mean target registration error (TRE) was 1.3 mm. MR-TRUS registration was also successfully performed for 5 patients with a mean TRE less than 2 mm. The proposed registration method may provide an accurate and robust means of estimating internal prostate-gland deformation, and could be valuable for prostate-cancer diagnosis and treatment.

  7. A SAR IMAGE REGISTRATION METHOD BASED ON SIFT ALGORITHM

    Directory of Open Access Journals (Sweden)

    W. Lu

    2017-09-01

    Full Text Available In order to improve the stability and rapidity of synthetic aperture radar (SAR images matching, an effective method was presented. Firstly, the adaptive smoothing filtering was employed for image denoising in image processing based on Wallis filtering to avoid the follow-up noise is amplified. Secondly, feature points were extracted by a simplified SIFT algorithm. Finally, the exact matching of the images was achieved with these points. Compared with the existing methods, it not only maintains the richness of features, but a-lso reduces the noise of the image. The simulation results show that the proposed algorithm can achieve better matching effect.

  8. a SAR Image Registration Method Based on Sift Algorithm

    Science.gov (United States)

    Lu, W.; Yue, X.; Zhao, Y.; Han, C.

    2017-09-01

    In order to improve the stability and rapidity of synthetic aperture radar (SAR) images matching, an effective method was presented. Firstly, the adaptive smoothing filtering was employed for image denoising in image processing based on Wallis filtering to avoid the follow-up noise is amplified. Secondly, feature points were extracted by a simplified SIFT algorithm. Finally, the exact matching of the images was achieved with these points. Compared with the existing methods, it not only maintains the richness of features, but a-lso reduces the noise of the image. The simulation results show that the proposed algorithm can achieve better matching effect.

  9. THE PROGRAM OF NON-RIGID PAVEMENT COMPUTER-AIDED CALCULATION УКРРДО 15

    OpenAIRE

    MUSIIENKO I.

    2016-01-01

    A program for computer-aided calculation of non-rigid road coating UKRRDO 15 is considered in the given article. The program interface, a set of input data and the results of calculations are considered in detail. Calculations are performed for three strength criteria: permissible elastic deflection, shear strength of subsoil and monolithic layers resistance of tensile bending.

  10. THE PROGRAM OF NON-RIGID PAVEMENT COMPUTER-AIDED CALCULATION УКРРДО 15

    Directory of Open Access Journals (Sweden)

    I. Musiienko

    2016-06-01

    Full Text Available A program for computer-aided calculation of non-rigid road coating UKRRDO 15 is considered in the given article. The program interface, a set of input data and the results of calculations are considered in detail. Calculations are performed for three strength criteria: permissible elastic deflection, shear strength of subsoil and monolithic layers resistance of tensile bending.

  11. Device and methods for "gold standard" registration of clinical 3D and 2D cerebral angiograms

    Science.gov (United States)

    Madan, Hennadii; Likar, Boštjan; Pernuš, Franjo; Å piclin, Žiga

    2015-03-01

    Translation of any novel and existing 3D-2D image registration methods into clinical image-guidance systems is limited due to lack of their objective validation on clinical image datasets. The main reason is that, besides the calibration of the 2D imaging system, a reference or "gold standard" registration is very difficult to obtain on clinical image datasets. In the context of cerebral endovascular image-guided interventions (EIGIs), we present a calibration device in the form of a headband with integrated fiducial markers and, secondly, propose an automated pipeline comprising 3D and 2D image processing, analysis and annotation steps, the result of which is a retrospective calibration of the 2D imaging system and an optimal, i.e., "gold standard" registration of 3D and 2D images. The device and methods were used to create the "gold standard" on 15 datasets of 3D and 2D cerebral angiograms, whereas each dataset was acquired on a patient undergoing EIGI for either aneurysm coiling or embolization of arteriovenous malformation. The use of the device integrated seamlessly in the clinical workflow of EIGI. While the automated pipeline eliminated all manual input or interactive image processing, analysis or annotation. In this way, the time to obtain the "gold standard" was reduced from 30 to less than one minute and the "gold standard" of 3D-2D registration on all 15 datasets of cerebral angiograms was obtained with a sub-0.1 mm accuracy.

  12. An Improved InSAR Image Co-Registration Method for Pairs with Relatively Big Distortions or Large Incoherent Areas

    Directory of Open Access Journals (Sweden)

    Zhenwei Chen

    2016-09-01

    Full Text Available Co-registration is one of the most important steps in interferometric synthetic aperture radar (InSAR data processing. The standard offset-measurement method based on cross-correlating uniformly distributed patches takes no account of specific geometric transformation between images or characteristics of ground scatterers. Hence, it is inefficient and difficult to obtain satisfying co-registration results for image pairs with relatively big distortion or large incoherent areas. Given this, an improved co-registration strategy is proposed in this paper which takes both the geometric features and image content into consideration. Firstly, some geometric transformations including scale, flip, rotation, and shear between images were eliminated based on the geometrical information, and the initial co-registration polynomial was obtained. Then the registration points were automatically detected by integrating the signal-to-clutter-ratio (SCR thresholds and the amplitude information, and a further co-registration process was performed to refine the polynomial. Several comparison experiments were carried out using 2 TerraSAR-X data from the Hong Kong airport and 21 PALSAR data from the Donghai Bridge. Experiment results demonstrate that the proposed method brings accuracy and efficiency improvements for co-registration and processing abilities in the cases of big distortion between images or large incoherent areas in the images. For most co-registrations, the proposed method can enhance the reliability and applicability of co-registration and thus promote the automation to a higher level.

  13. An Improved InSAR Image Co-Registration Method for Pairs with Relatively Big Distortions or Large Incoherent Areas.

    Science.gov (United States)

    Chen, Zhenwei; Zhang, Lei; Zhang, Guo

    2016-09-17

    Co-registration is one of the most important steps in interferometric synthetic aperture radar (InSAR) data processing. The standard offset-measurement method based on cross-correlating uniformly distributed patches takes no account of specific geometric transformation between images or characteristics of ground scatterers. Hence, it is inefficient and difficult to obtain satisfying co-registration results for image pairs with relatively big distortion or large incoherent areas. Given this, an improved co-registration strategy is proposed in this paper which takes both the geometric features and image content into consideration. Firstly, some geometric transformations including scale, flip, rotation, and shear between images were eliminated based on the geometrical information, and the initial co-registration polynomial was obtained. Then the registration points were automatically detected by integrating the signal-to-clutter-ratio (SCR) thresholds and the amplitude information, and a further co-registration process was performed to refine the polynomial. Several comparison experiments were carried out using 2 TerraSAR-X data from the Hong Kong airport and 21 PALSAR data from the Donghai Bridge. Experiment results demonstrate that the proposed method brings accuracy and efficiency improvements for co-registration and processing abilities in the cases of big distortion between images or large incoherent areas in the images. For most co-registrations, the proposed method can enhance the reliability and applicability of co-registration and thus promote the automation to a higher level.

  14. SU-C-18A-04: 3D Markerless Registration of Lung Based On Coherent Point Drift: Application in Image Guided Radiotherapy

    Energy Technology Data Exchange (ETDEWEB)

    Nasehi Tehrani, J; Wang, J [UT Southwestern Medical Center, Dallas, TX (United States); Guo, X [University of Texas at Dallas, Richardson, TX (United States); Yang, Y [The University of New Mexico, New Mexico, NM (United States)

    2014-06-01

    Purpose: This study evaluated a new probabilistic non-rigid registration method called coherent point drift for real time 3D markerless registration of the lung motion during radiotherapy. Method: 4DCT image datasets Dir-lab (www.dir-lab.com) have been used for creating 3D boundary element model of the lungs. For the first step, the 3D surface of the lungs in respiration phases T0 and T50 were segmented and divided into a finite number of linear triangular elements. Each triangle is a two dimensional object which has three vertices (each vertex has three degree of freedom). One of the main features of the lungs motion is velocity coherence so the vertices that creating the mesh of the lungs should also have features and degree of freedom of lung structure. This means that the vertices close to each other tend to move coherently. In the next step, we implemented a probabilistic non-rigid registration method called coherent point drift to calculate nonlinear displacement of vertices between different expiratory phases. Results: The method has been applied to images of 10-patients in Dir-lab dataset. The normal distribution of vertices to the origin for each expiratory stage were calculated. The results shows that the maximum error of registration between different expiratory phases is less than 0.4 mm (0.38 SI, 0.33 mm AP, 0.29 mm RL direction). This method is a reliable method for calculating the vector of displacement, and the degrees of freedom (DOFs) of lung structure in radiotherapy. Conclusions: We evaluated a new 3D registration method for distribution set of vertices inside lungs mesh. In this technique, lungs motion considering velocity coherence are inserted as a penalty in regularization function. The results indicate that high registration accuracy is achievable with CPD. This method is helpful for calculating of displacement vector and analyzing possible physiological and anatomical changes during treatment.

  15. Mass preserving image registration

    DEFF Research Database (Denmark)

    Gorbunova, Vladlena; Sporring, Jon; Lo, Pechin Chien Pau

    2010-01-01

    The paper presents results the mass preserving image registration method in the Evaluation of Methods for Pulmonary Image Registration 2010 (EMPIRE10) Challenge. The mass preserving image registration algorithm was applied to the 20 image pairs. Registration was evaluated using four different...

  16. Myocardial deformation from tagged MRI in hypertrophic cardiomyopathy using an efficient registration strategy

    Science.gov (United States)

    Piella, G.; De Craene, M.; Oubel, E.; Larrabide, I.; Huguet, M.; Bijnens, B. H.; Frangi, A. F.

    2009-02-01

    This paper combines different parallelization strategies for speeding up motion and deformation computation by non-rigid registration of a sequence of images. The registration is performed in a two-level acceleration approach: (1) parallelization of each registration process using MPI and/or threads, and (2) distribution of the sequential registrations over a cluster. On a 24-node double quad-core Intel Xeon (2.66 GHz CPU, 16 GB RAM) cluster, the method is demonstrated to efficiently compute the deformation of a cardiac sequence reducing the computation time from more than 3 hours to a couple of minutes (for low downsampled images). It is shown that the distribution of the sequential registrations over the cluster together with the parallelization of each pairwise registration by multithreading lowers the computation time towards values compatible with clinical requirements (a few minutes per patient). The combination of MPI and multithreading is only advantageous for large input data sizes. Performances are assessed for the specific scenario of aligning cardiac sequences of taggedMagnetic Resonance (tMR) images, with the aim of comparing strain in healthy subjects and hypertrophic cardiomyopathy (HCM) patients. In particular, we compared the distribution of systolic strain in both populations. On average, HCM patients showed lower average values of strain with larger deviation due to the coexistence of regions with impaired deformation and regions with normal deformation.

  17. Atlas to patient registration with brain tumor based on a mesh-free method.

    Science.gov (United States)

    Diaz, Idanis; Boulanger, Pierre

    2015-08-01

    Brain atlas to patient registration in the presence of tumors is a challenging task because its presence cause brain structure deformations and introduce large intensity variation between the affected areas. This large dissimilarity affects the results of traditional registration methods based on intensity or shape similarities. In order to overcome these problems, we propose a novel method that brings closer the atlas and the patient's image by simulating the mechanical behavior of brain deformation under a tumor pressure. The proposed method use a mesh-free total Lagrangian Explicit Dynamic algorithm for the simulation of atlas deformation and a data driven model of the tumor using multi-modal MRI segmentation. Experimental results look structurally very similar to the patient's image and outperform two of the top ranking algorithms.

  18. A fast inverse consistent deformable image registration method based on symmetric optical flow computation

    Science.gov (United States)

    Yang, Deshan; Li, Hua; Low, Daniel A.; Deasy, Joseph O.; El Naqa, Issam

    2008-11-01

    Deformable image registration is widely used in various radiation therapy applications including daily treatment planning adaptation to map planned tissue or dose to changing anatomy. In this work, a simple and efficient inverse consistency deformable registration method is proposed with aims of higher registration accuracy and faster convergence speed. Instead of registering image I to a second image J, the two images are symmetrically deformed toward one another in multiple passes, until both deformed images are matched and correct registration is therefore achieved. In each pass, a delta motion field is computed by minimizing a symmetric optical flow system cost function using modified optical flow algorithms. The images are then further deformed with the delta motion field in the positive and negative directions respectively, and then used for the next pass. The magnitude of the delta motion field is forced to be less than 0.4 voxel for every pass in order to guarantee smoothness and invertibility for the two overall motion fields that are accumulating the delta motion fields in both positive and negative directions, respectively. The final motion fields to register the original images I and J, in either direction, are calculated by inverting one overall motion field and combining the inversion result with the other overall motion field. The final motion fields are inversely consistent and this is ensured by the symmetric way that registration is carried out. The proposed method is demonstrated with phantom images, artificially deformed patient images and 4D-CT images. Our results suggest that the proposed method is able to improve the overall accuracy (reducing registration error by 30% or more, compared to the original and inversely inconsistent optical flow algorithms), reduce the inverse consistency error (by 95% or more) and increase the convergence rate (by 100% or more). The overall computation speed may slightly decrease, or increase in most cases

  19. A fast inverse consistent deformable image registration method based on symmetric optical flow computation

    Energy Technology Data Exchange (ETDEWEB)

    Yang Deshan; Li Hua; Low, Daniel A; Deasy, Joseph O; Naqa, Issam El [Department of Radiation Oncology, School of Medicine, Washington University in St. Louis, 4921 Parkview Place, LL, St. Louis, MO 63110 (United States)

    2008-11-07

    Deformable image registration is widely used in various radiation therapy applications including daily treatment planning adaptation to map planned tissue or dose to changing anatomy. In this work, a simple and efficient inverse consistency deformable registration method is proposed with aims of higher registration accuracy and faster convergence speed. Instead of registering image I to a second image J, the two images are symmetrically deformed toward one another in multiple passes, until both deformed images are matched and correct registration is therefore achieved. In each pass, a delta motion field is computed by minimizing a symmetric optical flow system cost function using modified optical flow algorithms. The images are then further deformed with the delta motion field in the positive and negative directions respectively, and then used for the next pass. The magnitude of the delta motion field is forced to be less than 0.4 voxel for every pass in order to guarantee smoothness and invertibility for the two overall motion fields that are accumulating the delta motion fields in both positive and negative directions, respectively. The final motion fields to register the original images I and J, in either direction, are calculated by inverting one overall motion field and combining the inversion result with the other overall motion field. The final motion fields are inversely consistent and this is ensured by the symmetric way that registration is carried out. The proposed method is demonstrated with phantom images, artificially deformed patient images and 4D-CT images. Our results suggest that the proposed method is able to improve the overall accuracy (reducing registration error by 30% or more, compared to the original and inversely inconsistent optical flow algorithms), reduce the inverse consistency error (by 95% or more) and increase the convergence rate (by 100% or more). The overall computation speed may slightly decrease, or increase in most cases

  20. MO-F-BRA-04: Voxel-Based Statistical Analysis of Deformable Image Registration Error via a Finite Element Method.

    Science.gov (United States)

    Li, S; Lu, M; Kim, J; Glide-Hurst, C; Chetty, I; Zhong, H

    2012-06-01

    Purpose Clinical implementation of adaptive treatment planning is limited by the lack of quantitative tools to assess deformable image registration errors (R-ERR). The purpose of this study was to develop a method, using finite element modeling (FEM), to estimate registration errors based on mechanical changes resulting from them. Methods An experimental platform to quantify the correlation between registration errors and their mechanical consequences was developed as follows: diaphragm deformation was simulated on the CT images in patients with lung cancer using a finite element method (FEM). The simulated displacement vector fields (F-DVF) were used to warp each CT image to generate a FEM image. B-Spline based (Elastix) registrations were performed from reference to FEM images to generate a registration DVF (R-DVF). The F- DVF was subtracted from R-DVF. The magnitude of the difference vector was defined as the registration error, which is a consequence of mechanically unbalanced energy (UE), computed using 'in-house-developed' FEM software. A nonlinear regression model was used based on imaging voxel data and the analysis considered clustered voxel data within images. Results A regression model analysis showed that UE was significantly correlated with registration error, DVF and the product of registration error and DVF respectively with R̂2=0.73 (R=0.854). The association was verified independently using 40 tracked landmarks. A linear function between the means of UE values and R- DVF*R-ERR has been established. The mean registration error (N=8) was 0.9 mm. 85.4% of voxels fit this model within one standard deviation. Conclusions An encouraging relationship between UE and registration error has been found. These experimental results suggest the feasibility of UE as a valuable tool for evaluating registration errors, thus supporting 4D and adaptive radiotherapy. The research was supported by NIH/NCI R01CA140341. © 2012 American Association of Physicists in

  1. Medical image registration using sparse coding of image patches.

    Science.gov (United States)

    Afzali, Maryam; Ghaffari, Aboozar; Fatemizadeh, Emad; Soltanian-Zadeh, Hamid

    2016-06-01

    Image registration is a basic task in medical image processing applications like group analysis and atlas construction. Similarity measure is a critical ingredient of image registration. Intensity distortion of medical images is not considered in most previous similarity measures. Therefore, in the presence of bias field distortions, they do not generate an acceptable registration. In this paper, we propose a sparse based similarity measure for mono-modal images that considers non-stationary intensity and spatially-varying distortions. The main idea behind this measure is that the aligned image is constructed by an analysis dictionary trained using the image patches. For this purpose, we use "Analysis K-SVD" to train the dictionary and find the sparse coefficients. We utilize image patches to construct the analysis dictionary and then we employ the proposed sparse similarity measure to find a non-rigid transformation using free form deformation (FFD). Experimental results show that the proposed approach is able to robustly register 2D and 3D images in both simulated and real cases. The proposed method outperforms other state-of-the-art similarity measures and decreases the transformation error compared to the previous methods. Even in the presence of bias field distortion, the proposed method aligns images without any preprocessing.

  2. Ab initio effective rotational and rovibrational Hamiltonians for non-rigid systems via curvilinear second order vibrational M{\\o}ller-Plesset perturbation theory

    CERN Document Server

    Changala, P Bryan

    2016-01-01

    We present a perturbative method for ab initio calculations of rotational and rovibrational effective Hamiltonians of both rigid and non-rigid molecules. Our approach is based on a curvilinear implementation of second order vibrational M{\\o}ller-Plesset perturbation theory (VMP2) extended to include rotational effects via a second order contact transformation. Though more expensive, this approach is significantly more accurate than standard second order vibrational perturbation theory (VPT2) for systems that are poorly described to zeroth order by rectilinear normal mode harmonic oscillators. We apply this method and demonstrate its accuracy on two molecules: Si$_2$C, a quasilinear triatomic with significant bending anharmonicity, and CH$_3$NO$_2$, which contains a completely unhindered methyl rotor. In addition to these two examples, we discuss several key technical aspects of the method, including an efficient implementation of Eckart and quasi-Eckart frame embedding that does not rely on numerical finite d...

  3. A Comparative Study of Registration Methods for RGB-D Video of Static Scenes

    Directory of Open Access Journals (Sweden)

    Vicente Morell-Gimenez

    2014-05-01

    Full Text Available The use of RGB-D sensors for mapping and recognition tasks in robotics or, in general, for virtual reconstruction has increased in recent years. The key aspect of these kinds of sensors is that they provide both depth and color information using the same device. In this paper, we present a comparative analysis of the most important methods used in the literature for the registration of subsequent RGB-D video frames in static scenarios. The analysis begins by explaining the characteristics of the registration problem, dividing it into two representative applications: scene modeling and object reconstruction. Then, a detailed experimentation is carried out to determine the behavior of the different methods depending on the application. For both applications, we used standard datasets and a new one built for object reconstruction.

  4. Developing information literacy skills in pre-registration nurses: an experimental study of teaching methods.

    Science.gov (United States)

    Brettle, Alison; Raynor, Michael

    2013-02-01

    To compare the effectiveness of an online information literacy tutorial with a face-to-face session for teaching information literacy skills to nurses. Randomised control trial. Seventy-seven first year undergraduate pre-registration diploma nursing students. Online in-house information literacy tutorial One hour face-to-face session, covering the same material as the intervention, delivered by the nursing subject librarian. Search histories were scored using a validated checklist covering keyword selection, boolean operators, truncation and synonyms. Skills retention was measured at 1 month using the same checklist. Inferential statistics were used to compare search skills within and between groups pre and post-session. The searching skills of first year pre-registration nursing students improve following information literacy sessions (pInformation literacy skills improve after both face-to-face and online instruction. There is no skills degradation at 1 month post-intervention for either method. Copyright © 2011. Published by Elsevier Ltd.

  5. Wide-area image restoration using a new iterative registration method

    Science.gov (United States)

    Fraser, Donald; Lambert, Andrew J.

    2000-11-01

    Over a wide field of view (e.g., 100 arcsec in optical astronomy) the point spread function due to atmospheric effects is found to be far form position invariant, and appears as a combination of local warping and local blurring. Recently, we discussed a method in which the first step in restoration is to register all points in every frame of a movie sequence to the corresponding points in a prototype image. After registration, each frame is de- warped and summed to form an average, motion-blur corrected result. Previously, we applied a hierarchical, windowed cross correlation process to obtain local x and y registration information, similar to common methods in stereo cartography. We discuss a new approach to image registration for this purpose. Suppose two images to be registered differ mainly in varying random, but spatially coherent warping (such as occurs as one effect of a slowly varying wavefront tip-tilt over a wide field of vies). Imagine that one image, the reference image, is represented by a solid surface corresponding to its intensity distribution. Imagine that the second image is also represented by a surface, but in the form of a flexible, rubber mold. If the two images are identical, then the mold fits the solid like a glove. If one image includes local warping relative to the other, then the mold or glove must be forced to fit though local distortions.

  6. Evaluation of Field Map and Nonlinear Registration Methods for Correction of Susceptibility Artifacts in Diffusion MRI

    Science.gov (United States)

    Wang, Sijia; Peterson, Daniel J.; Gatenby, J. C.; Li, Wenbin; Grabowski, Thomas J.; Madhyastha, Tara M.

    2017-01-01

    Correction of echo planar imaging (EPI)-induced distortions (called “unwarping”) improves anatomical fidelity for diffusion magnetic resonance imaging (MRI) and functional imaging investigations. Commonly used unwarping methods require the acquisition of supplementary images during the scanning session. Alternatively, distortions can be corrected by nonlinear registration to a non-EPI acquired structural image. In this study, we compared reliability using two methods of unwarping: (1) nonlinear registration to a structural image using symmetric normalization (SyN) implemented in Advanced Normalization Tools (ANTs); and (2) unwarping using an acquired field map. We performed this comparison in two different test-retest data sets acquired at differing sites (N = 39 and N = 32). In both data sets, nonlinear registration provided higher test-retest reliability of the output fractional anisotropy (FA) maps than field map-based unwarping, even when accounting for the effect of interpolation on the smoothness of the images. In general, field map-based unwarping was preferable if and only if the field maps were acquired optimally.

  7. Calculation of the temperature of asphalt concrete at making the joints of multilane road pavement of non-rigid type

    OpenAIRE

    Giyasov Botir Iminzhonovich; Kupriyanov Roman Valer’evich; Andrianov Konstantin Anatol’evich; Zubkov Anatoliy Fedorovich

    2015-01-01

    The construction quality of road surface of non-rigid type essentially depend on providing the temperature regimes in the process of laying and packing of hot asphalt concrete mixtures. In order to provide the required characteristics of asphalt concrete due to the surface width it is necessary to provide the temperature regimes of hot asphalt concrete mixture in the zones of lane connection. The hot mixture is promptly cooling right after laying within several minutes, which results, accordi...

  8. Non-rigid, but not rigid, motion interferes with the processing of structural face information in developmental prosopagnosia.

    Science.gov (United States)

    Maguinness, Corrina; Newell, Fiona N

    2015-04-01

    There is growing evidence to suggest that facial motion is an important cue for face recognition. However, it is poorly understood whether motion is integrated with facial form information or whether it provides an independent cue to identity. To provide further insight into this issue, we compared the effect of motion on face perception in two developmental prosopagnosics and age-matched controls. Participants first learned faces presented dynamically (video), or in a sequence of static images, in which rigid (viewpoint) or non-rigid (expression) changes occurred. Immediately following learning, participants were required to match a static face image to the learned face. Test face images varied by viewpoint (Experiment 1) or expression (Experiment 2) and were learned or novel face images. We found similar performance across prosopagnosics and controls in matching facial identity across changes in viewpoint when the learned face was shown moving in a rigid manner. However, non-rigid motion interfered with face matching across changes in expression in both individuals with prosopagnosia compared to the performance of control participants. In contrast, non-rigid motion did not differentially affect the matching of facial expressions across changes in identity for either prosopagnosics (Experiment 3). Our results suggest that whilst the processing of rigid motion information of a face may be preserved in developmental prosopagnosia, non-rigid motion can specifically interfere with the representation of structural face information. Taken together, these results suggest that both form and motion cues are important in face perception and that these cues are likely integrated in the representation of facial identity.

  9. A self-recalibration method based on scale-invariant registration for structured light measurement systems

    Science.gov (United States)

    Chen, Rui; Xu, Jing; Zhang, Song; Chen, Heping; Guan, Yong; Chen, Ken

    2017-01-01

    The accuracy of structured light measurement depends on delicate offline calibration. However, in some practical applications, the system is supposed to be reconfigured so frequently to track the target that an online calibration is required. To this end, this paper proposes a rapid and autonomous self-recalibration method. For the proposed method, first, the rotation matrix and the normalized translation vector are attained from the fundamental matrix; second, the scale factor is acquired based on scale-invariant registration such that the actual translation vector is obtained. Experiments have been conducted to verify the effectiveness of our proposed method and the results indicate a high degree of accuracy.

  10. An adaptive MR-CT registration method for MRI-guided prostate cancer radiotherapy

    Science.gov (United States)

    Zhong, Hualiang; Wen, Ning; Gordon, James J.; Elshaikh, Mohamed A.; Movsas, Benjamin; Chetty, Indrin J.

    2015-04-01

    Magnetic Resonance images (MRI) have superior soft tissue contrast compared with CT images. Therefore, MRI might be a better imaging modality to differentiate the prostate from surrounding normal organs. Methods to accurately register MRI to simulation CT images are essential, as we transition the use of MRI into the routine clinic setting. In this study, we present a finite element method (FEM) to improve the performance of a commercially available, B-spline-based registration algorithm in the prostate region. Specifically, prostate contours were delineated independently on ten MRI and CT images using the Eclipse treatment planning system. Each pair of MRI and CT images was registered with the B-spline-based algorithm implemented in the VelocityAI system. A bounding box that contains the prostate volume in the CT image was selected and partitioned into a tetrahedral mesh. An adaptive finite element method was then developed to adjust the displacement vector fields (DVFs) of the B-spline-based registrations within the box. The B-spline and FEM-based registrations were evaluated based on the variations of prostate volume and tumor centroid, the unbalanced energy of the generated DVFs, and the clarity of the reconstructed anatomical structures. The results showed that the volumes of the prostate contours warped with the B-spline-based DVFs changed 10.2% on average, relative to the volumes of the prostate contours on the original MR images. This discrepancy was reduced to 1.5% for the FEM-based DVFs. The average unbalanced energy was 2.65 and 0.38 mJ cm-3, and the prostate centroid deviation was 0.37 and 0.28 cm, for the B-spline and FEM-based registrations, respectively. Different from the B-spline-warped MR images, the FEM-warped MR images have clear boundaries between prostates and bladders, and their internal prostatic structures are consistent with those of the original MR images. In summary, the developed adaptive FEM method preserves the prostate volume

  11. [Assessment of overall spatial accuracy in image guided stereotactic body radiotherapy using a spine registration method].

    Science.gov (United States)

    Nakazawa, Hisato; Uchiyama, Yukio; Komori, Masataka; Hayashi, Naoki

    2014-06-01

    Stereotactic body radiotherapy (SBRT) for lung and liver tumors is always performed under image guidance, a technique used to confirm the accuracy of setup positioning by fusing planning digitally reconstructed radiographs with X-ray, fluoroscopic, or computed tomography (CT) images, using bony structures, tumor shadows, or metallic markers as landmarks. The Japanese SBRT guidelines state that bony spinal structures should be used as the main landmarks for patient setup. In this study, we used the Novalis system as a linear accelerator for SBRT of lung and liver tumors. The current study compared the differences between spine registration and target registration and calculated total spatial accuracy including setup uncertainty derived from our image registration results and the geometric uncertainty of the Novalis system. We were able to evaluate clearly whether overall spatial accuracy is achieved within a setup margin (SM) for planning target volume (PTV) in treatment planning. After being granted approval by the Hospital and University Ethics Committee, we retrospectively analyzed eleven patients with lung tumor and seven patients with liver tumor. The results showed the total spatial accuracy to be within a tolerable range for SM of treatment planning. We therefore regard our method to be suitable for image fusion involving 2-dimensional X-ray images during the treatment planning stage of SBRT for lung and liver tumors.

  12. Image registration

    CERN Document Server

    Goshtasby, A Ardeshir

    2012-01-01

    This book presents a thorough and detailed guide to image registration, outlining the principles and reviewing state-of-the-art tools and methods. The book begins by identifying the components of a general image registration system, and then describes the design of each component using various image analysis tools. The text reviews a vast array of tools and methods, not only describing the principles behind each tool and method, but also measuring and comparing their performances using synthetic and real data. Features: discusses similarity/dissimilarity measures, point detectors, feature extr

  13. Objective method for registration of the sniffing component of the search behavior in rabbits subjected to food deprivation.

    Science.gov (United States)

    Kromin, A A; Ignatova, Yu P

    2014-02-01

    A method for registration of the sniffing component of the search behavior in rabbits subjected to food deprivation is suggested. Pulsed activities of the muscles controlling the movements of the wings of the nostrils and the pressure in the nasal cavity are recorded simultaneously. The method allows accurate artifact-free registration of the time and amplitude parameters of the sniffing component of the search behavior. The registration is realized on an MP150 programmed complex, consisting of EMG 100C biopotential amplifiers and Samba 202 intracavitary pressure recorder. The method allows synchronous real-time registration of pulsed activities of the muscles setting in motion the wings of the nostrils and the changes in the intranasal pressure in the course of search behavior of animals under conditions of food deprivation without limiting their locomotor activity.

  14. A Combined Method for Segmentation and Registration for an Advanced and Progressive Evaluation of Thermal Images

    Directory of Open Access Journals (Sweden)

    Emilio Z. Barcelos

    2014-11-01

    Full Text Available In this paper, a method that combines image analysis techniques, such as segmentation and registration, is proposed for an advanced and progressive evaluation of thermograms. The method is applied for the prevention of muscle injury in high-performance athletes, in collaboration with a Brazilian professional soccer club. The goal is to produce information on spatio-temporal variations of thermograms favoring the investigation of the athletes’ conditions along the competition. The proposed method improves on current practice by providing a means for automatically detecting adaptive body-shaped regions of interest, instead of the manual selection of simple shapes. Specifically, our approach combines the optimization features in Otsu’s method with a correction factor and post-processing techniques, enhancing thermal-image segmentation when compared to other methods. Additional contributions resulting from the combination of the segmentation and registration steps of our approach are the progressive analyses of thermograms in a unique spatial coordinate system and the accurate extraction of measurements and isotherms.

  15. Quantitative evaluation of an image registration method for a NIPAM gel dosimeter

    Energy Technology Data Exchange (ETDEWEB)

    Chang, Yuan-Jen [Department of Management Information Systems, Central Taiwan University of Science and Technology, No. 666, Buzih Rd., Beitun District, Taichung City, Taiwan (R.O.C.) (China); Institute of Biomedical Engineering and Materials Science, Central Taiwan University of Science and Technology, No. 666, Buzih Rd., Beitun District, Taichung City, Taiwan (R.O.C.) (China); Yao, Chun-Hsu [School of Chinese Medicine, China Medical University, Taichung, Taiwan (R.O.C.) (China); Department of Biomedical Imaging and Radiological Science, China Medical University, Taichung, Taiwan (R.O.C.) (China); Department of Biomedical Informatics, Asia University, Taichung, Taiwan (R.O.C.) (China); Wu, Jay [Department of Biomedical Imaging and Radiological Sciences, National Yang-Ming University, Taipei, Taiwan (R.O.C.) (China); Hsieh, Bor-Tsung [Department of Biomedical Imaging and Radiological Sciences, Central Taiwan University of Science and Technology, Taichung, Taiwan (R.O.C.) (China); Tsang, Yuk-Wah [Department of Radiation Oncology, Ditmanson Medical Foundation Chiayi Christian Hospital, Chiayi, Taiwan (R.O.C.) (China); Chen, Chin-Hsing [Department of Management Information Systems, Central Taiwan University of Science and Technology, No. 666, Buzih Rd., Beitun District, Taichung City, Taiwan (R.O.C.) (China)

    2015-06-01

    One of the problems in obtaining quality results is image registration when a gel dosimeter is used in conjunction with optical computed tomography (CT). This study proposes a passive alignment mechanism to obtain a precisely measured dose map. A holder plate with two pin–hole pairs is placed on the gel container cap. These two pin–hole pairs attach the gel container to the vertical shaft and can be precisely aligned with the rotation center of the vertical shaft at any time. Accordingly, a better reconstructed image quality is obtained. After obtaining a precisely measured dose map, the scale invariant feature transform (SIFT)-flow algorithm is utilized as an image registration method to align the treatment plan software (TPS) image with the measured dose map image. The results show that the gamma pass rate for the single-field irradiation increases from 83.39% to 94.03% when the algorithm is applied. And the gamma pass rate for the five-field irradiation treatment plan increases from 87.36% to 94.34%. The translation, scaling, and rotation occurring in the dose map image constructed using an optical CT scanner are also aligned with those in the TPS image using the SIFT-flow algorithm. Accordingly, improved gamma comparison results and a higher gamma pass rate are obtained. - Highlights: • A passive alignment method for obtaining a precisely measured dose map is developed. • The SIFT-flow algorithm is adopted as an image registration method for the gel dosimeter. • The SIFT-flow algorithm increases the gamma pass rate from 83.39% to 94.03% for the single-field irradiation. • The SIFT-flow algorithm increases the gamma pass rate from 87.36% to 94.34% for the five-field irradiation. • The translation, scaling, and rotation in the measured dose map image are aligned with those in the TPS image using the SIFT-flow algorithm.

  16. An active contour-based atlas registration model applied to automatic subthalamic nucleus targeting on MRI: method and validation.

    Science.gov (United States)

    Duay, Valérie; Bresson, Xavier; Castro, Javier Sanchez; Pollo, Claudio; Cuadra, Meritxell Bach; Thiran, Jean-Philippe

    2008-01-01

    This paper presents a new non parametric atlas registration framework, derived from the optical flow model and the active contour theory, applied to automatic subthalamic nucleus (STN) targeting in deep brain stimulation (DBS) surgery. In a previous work, we demonstrated that the STN position can be predicted based on the position of surrounding visible structures, namely the lateral and third ventricles. A STN targeting process can thus be obtained by registering these structures of interest between a brain atlas and the patient image. Here we aim to improve the results of the state of the art targeting methods and at the same time to reduce the computational time. Our simultaneous segmentation and registration model shows mean STN localization errors statistically similar to the most performing registration algorithms tested so far and to the targeting expert's variability. Moreover, the computational time of our registration method is much lower, which is a worthwhile improvement from a clinical point of view.

  17. Automatic Registration Method for Optical Remote Sensing Images with Large Background Variations Using Line Segments

    Directory of Open Access Journals (Sweden)

    Xiaolong Shi

    2016-05-01

    Full Text Available Image registration is an essential step in the process of image fusion, environment surveillance and change detection. Finding correct feature matches during the registration process proves to be difficult, especially for remote sensing images with large background variations (e.g., images taken pre and post an earthquake or flood. Traditional registration methods based on local intensity probably cannot maintain steady performances, as differences are significant in the same area of the corresponding images, and ground control points are not always available in many disaster images. In this paper, an automatic image registration method based on the line segments on the main shape contours (e.g., coastal lines, long roads and mountain ridges is proposed for remote sensing images with large background variations because the main shape contours can hold relatively more invariant information. First, a line segment detector called EDLines (Edge Drawing Lines, which was proposed by Akinlar et al. in 2011, is used to extract line segments from two corresponding images, and a line validation step is performed to remove meaningless and fragmented line segments. Then, a novel line segment descriptor with a new histogram binning strategy, which is robust to global geometrical distortions, is generated for each line segment based on the geometrical relationships,including both the locations and orientations of theremaining line segments relative to it. As a result of the invariance of the main shape contours, correct line segment matches will have similar descriptors and can be obtained by cross-matching among the descriptors. Finally, a spatial consistency measure is used to remove incorrect matches, and transformation parameters between the reference and sensed images can be figured out. Experiments with images from different types of satellite datasets, such as Landsat7, QuickBird, WorldView, and so on, demonstrate that the proposed algorithm is

  18. AB initio calculations of the structure and stability of the non-rigid LiBF 4 molecule

    Science.gov (United States)

    Zakzhevzskii, V. G.; Boldyrev, A. I.; Charkin, O. P.

    1980-07-01

    Ab initio calculations of the potential energy surface, equilibrium geometry and energetic stability of the non-rigid LiBF4 molecule have been performed using the basis sets of Roos and Siegbahn, and Huzinaga and Dunning in a doublezeta contraction. The results are compared with similar ab initio data for LiBH 4, LiAlH 4, LiBeH -4, LiCH +4, Li 2 F 2, and LiBeF 3 ‡The geometry of the most disadvantageous configuration (m) was not optimized completely

  19. Comparison of template registration methods for multi-site meta-analysis of brain morphometry

    Science.gov (United States)

    Faskowitz, Joshua; de Zubicaray, Greig I.; McMahon, Katie L.; Wright, Margaret J.; Thompson, Paul M.; Jahanshad, Neda

    2016-03-01

    Neuroimaging consortia such as ENIGMA can significantly improve power to discover factors that affect the human brain by pooling statistical inferences across cohorts to draw generalized conclusions from populations around the world. Voxelwise analyses such as tensor-based morphometry also allow an unbiased search for effects throughout the brain. Even so, such consortium-based analyses are limited by a lack of high-powered methods to harmonize voxelwise information across study populations and scanners. While the simplest approach may be to map all images to a single standard space, the benefits of cohort-specific templates have long been established. Here we studied methods to pool voxel-wise data across sites using templates customized for each cohort but providing a meaningful common space across all studies for voxelwise comparisons. As non-linear 3D MRI registrations represent mappings between images at millimeter resolution, we need to consider the reliability of these mappings. To evaluate these mappings, we calculated test-retest statistics on the volumetric maps of expansion and contraction. Further, we created study-specific brain templates for ten T1-weighted MRI datasets, and a common space from four study-specific templates. We evaluated the efficacy of using a two-step registration framework versus a single standard space. We found that the two-step framework more reliably mapped subjects to a common space.

  20. An automatic high precision registration method between large area aerial images and aerial light detection and ranging data

    Science.gov (United States)

    Du, Q.; Xie, D.; Sun, Y.

    2015-06-01

    The integration of digital aerial photogrammetry and Light Detetion And Ranging (LiDAR) is an inevitable trend in Surveying and Mapping field. We calculate the external orientation elements of images which identical with LiDAR coordinate to realize automatic high precision registration between aerial images and LiDAR data. There are two ways to calculate orientation elements. One is single image spatial resection using image matching 3D points that registered to LiDAR. The other one is Position and Orientation System (POS) data supported aerotriangulation. The high precision registration points are selected as Ground Control Points (GCPs) instead of measuring GCPs manually during aerotriangulation. The registration experiments indicate that the method which registering aerial images and LiDAR points has a great advantage in higher automation and precision compare with manual registration.

  1. Gaseous Radiochemical Method for Registration of Ionizing Radiation and Its Possible Applications in Science and Industry

    CERN Document Server

    Lebedev, S G

    2005-01-01

    This work presents a new possibility of registration of ionizing radiation by the flowing gaseous radiochemical method (FGRM). The specified method uses the property of some solid crystalline lattice materials for a free emission of radioactive isotopes of inert gas atoms formed as a result of nuclear reactions. Generated in an ampoule of the detector, the radioactive inert gases are transported by a gas-carrier into the proportional gas counter of the flowing type, where the decay rate of the radioactive gas species is measured. This quantity is unequivocally related to the flux of particles (neutrons, protons, light and heavy ions) at the location of the ampoule. The method was used to monitor the neutron flux of the pulsed neutron target "RADEX" driven by the linear proton accelerator of INR RAS. Further progress of the FGRM may give rise to possible applications in nuclear physics, astrophysics and medicine, in the nondestructive control of fissionable materials, diagnostics of thermonuclear plasma, monit...

  2. Three-dimensional registration methods for multi-modal magnetic resonance neuroimages

    CERN Document Server

    Triantafyllou, C

    2001-01-01

    automatically such measures in a reliable way. possible in principle, although the true accuracy of the method depends on the type of geometrical distortions present. These results also reveal that this class of algorithm is unable to solve more localised variations and higher order magnetic field distortions between the images. These facts motivate the development of a high-dimensional 3-D registration method capable of effecting a one-to-one correspondence by capturing the localised differences. This method was seen to account not only for topological differences but also for non-linear deformations in size and shape. Validation of the algorithm is carried out on geometrical objects, simulated data and real images to ensure that the important requirements for a topologically useful mapping; invertibility, smoothness of the deformation field and an almost perfect correspondence can be maintained between two image sequences. Finally, the performance of both approaches is compared by their application to clini...

  3. A Bayesian nonrigid registration method to enhance intraoperative target definition in image-guided prostate procedures through uncertainty characterization

    Science.gov (United States)

    Pursley, Jennifer; Risholm, Petter; Fedorov, Andriy; Tuncali, Kemal; Fennessy, Fiona M.; Wells, William M.; Tempany, Clare M.; Cormack, Robert A.

    2012-01-01

    Purpose: This study introduces a probabilistic nonrigid registration method for use in image-guided prostate brachytherapy. Intraoperative imaging for prostate procedures, usually transrectal ultrasound (TRUS), is typically inferior to diagnostic-quality imaging of the pelvis such as endorectal magnetic resonance imaging (MRI). MR images contain superior detail of the prostate boundaries and provide substructure features not otherwise visible. Previous efforts to register diagnostic prostate images with the intraoperative coordinate system have been deterministic and did not offer a measure of the registration uncertainty. The authors developed a Bayesian registration method to estimate the posterior distribution on deformations and provide a case-specific measure of the associated registration uncertainty. Methods: The authors adapted a biomechanical-based probabilistic nonrigid method to register diagnostic to intraoperative images by aligning a physician's segmentations of the prostate in the two images. The posterior distribution was characterized with a Markov Chain Monte Carlo method; the maximum a posteriori deformation and the associated uncertainty were estimated from the collection of deformation samples drawn from the posterior distribution. The authors validated the registration method using a dataset created from ten patients with MRI-guided prostate biopsies who had both diagnostic and intraprocedural 3 Tesla MRI scans. The accuracy and precision of the estimated posterior distribution on deformations were evaluated from two predictive distance distributions: between the deformed central zone-peripheral zone (CZ-PZ) interface and the physician-labeled interface, and based on physician-defined landmarks. Geometric margins on the registration of the prostate's peripheral zone were determined from the posterior predictive distance to the CZ-PZ interface separately for the base, mid-gland, and apical regions of the prostate. Results: The authors observed

  4. Quantitative evaluation of an image registration method for a NIPAM gel dosimeter

    Science.gov (United States)

    Chang, Yuan-Jen; Yao, Chun-Hsu; Wu, Jay; Hsieh, Bor-Tsung; Tsang, Yuk-Wah; Chen, Chin-Hsing

    2015-06-01

    One of the problems in obtaining quality results is image registration when a gel dosimeter is used in conjunction with optical computed tomography (CT). This study proposes a passive alignment mechanism to obtain a precisely measured dose map. A holder plate with two pin-hole pairs is placed on the gel container cap. These two pin-hole pairs attach the gel container to the vertical shaft and can be precisely aligned with the rotation center of the vertical shaft at any time. Accordingly, a better reconstructed image quality is obtained. After obtaining a precisely measured dose map, the scale invariant feature transform (SIFT)-flow algorithm is utilized as an image registration method to align the treatment plan software (TPS) image with the measured dose map image. The results show that the gamma pass rate for the single-field irradiation increases from 83.39% to 94.03% when the algorithm is applied. And the gamma pass rate for the five-field irradiation treatment plan increases from 87.36% to 94.34%. The translation, scaling, and rotation occurring in the dose map image constructed using an optical CT scanner are also aligned with those in the TPS image using the SIFT-flow algorithm. Accordingly, improved gamma comparison results and a higher gamma pass rate are obtained.

  5. Estimating completeness of cancer registration in Saarland/Germany with capture-recapture methods.

    Science.gov (United States)

    Brenner, H; Stegmaier, C; Ziegler, H

    1994-01-01

    Completeness of population-based cancer registration has been most commonly quantified by indirect measures, such as the death certificate only index or the mortality/incidence ratio. A major disadvantage of these measures is their strong dependence on the case fatality rate. Capture-recapture methodology offers an approach to estimate completeness directly which does not share this limitation. In this paper, a three-sources modelling approach is employed to derive estimates of completeness for the population-based cancer registry of Saarland. Overall, completeness is found to be high: estimates for all types of cancer range from 95.5 to 96.9% for calendar years 1970, 1975, 1980 and 1985. There is some variation with age (consistently high levels above age 30 years, a minimum of 87.7% in age group 15-29 years) and between cancer sites. Among the most common cancer sites, estimates of completeness are highest for gastrointestinal cancers (97.2%) and breast cancer (97.1%), while lower estimates of completeness are derived for cancers of the female genital organs (92.5%), the urinary tract (91.8%) and the prostate (91.0%). Although capture-recapture estimates are sensitive to the underlying assumptions about dependence between sources, careful application is encouraged to supplement traditional methods for evaluating completeness of cancer registration.

  6. Estimating the Video Registration Using Image Motions

    Directory of Open Access Journals (Sweden)

    N.Kannaiya Raja

    2012-07-01

    Full Text Available In this research, we consider the problems of registering multiple video sequences dynamic scenes which are not limited non rigid objects such as fireworks, blasting, high speed car moving taken from different vantage points. In this paper we propose a simple algorithm we can create different frames on particular videos moving for matching such complex scenes. Our algorithm does not require the cameras to be synchronized, and is not based on frame-by-frame or volume-by-volume registration. Instead, we model each video as the output of a linear dynamical system and transform the task of registering the video sequences to that of registering the parameters of the corresponding dynamical models. In this paper we use of a joint frame together to form distinct frame concurrently. The joint identification and the Jordan canonical form are not only applicable to the case of registering video sequences, but also to the entire genre of algorithms based on the dynamic texture model. We have also shown that out of all the possible choices for the method of identification and canonical form, the JID using JCF performs the best.

  7. In-die photomask registration and overlay metrology with PROVE using 2D correlation methods

    Science.gov (United States)

    Seidel, D.; Arnz, M.; Beyer, D.

    2011-11-01

    According to the ITRS roadmap, semiconductor industry drives the 193nm lithography to its limits, using techniques like double exposure, double patterning, mask-source optimization and inverse lithography. For photomask metrology this translates to full in-die measurement capability for registration and critical dimension together with challenging specifications for repeatability and accuracy. Especially, overlay becomes more and more critical and must be ensured on every die. For this, Carl Zeiss SMS has developed the next generation photomask registration and overlay metrology tool PROVE® which serves the 32nm node and below and which is already well established in the market. PROVE® features highly stable hardware components for the stage and environmental control. To ensure in-die measurement capability, sophisticated image analysis methods based on 2D correlations have been developed. In this paper we demonstrate the in-die capability of PROVE® and present corresponding measurement results for shortterm and long-term measurements as well as the attainable accuracy for feature sizes down to 85nm using different illumination modes and mask types. Standard measurement methods based on threshold criteria are compared with the new 2D correlation methods to demonstrate the performance gain of the latter. In addition, mask-to-mask overlay results of typical box-in-frame structures down to 200nm feature size are presented. It is shown, that from overlay measurements a reproducibility budget can be derived that takes into account stage, image analysis and global effects like mask loading and environmental control. The parts of the budget are quantified from measurement results to identify critical error contributions and to focus on the corresponding improvement strategies.

  8. A Registration Method Based on Contour Point Cloud for 3D Whole-Body PET and CT Images

    Directory of Open Access Journals (Sweden)

    Zhiying Song

    2017-01-01

    Full Text Available The PET and CT fusion image, combining the anatomical and functional information, has important clinical meaning. An effective registration of PET and CT images is the basis of image fusion. This paper presents a multithread registration method based on contour point cloud for 3D whole-body PET and CT images. Firstly, a geometric feature-based segmentation (GFS method and a dynamic threshold denoising (DTD method are creatively proposed to preprocess CT and PET images, respectively. Next, a new automated trunk slices extraction method is presented for extracting feature point clouds. Finally, the multithread Iterative Closet Point is adopted to drive an affine transform. We compare our method with a multiresolution registration method based on Mattes Mutual Information on 13 pairs (246~286 slices per pair of 3D whole-body PET and CT data. Experimental results demonstrate the registration effectiveness of our method with lower negative normalization correlation (NC = −0.933 on feature images and less Euclidean distance error (ED = 2.826 on landmark points, outperforming the source data (NC = −0.496, ED = 25.847 and the compared method (NC = −0.614, ED = 16.085. Moreover, our method is about ten times faster than the compared one.

  9. A method for dynamic subtraction MR imaging of the liver

    Directory of Open Access Journals (Sweden)

    Setti Ernesto

    2006-06-01

    Full Text Available Abstract Background Subtraction of Dynamic Contrast-Enhanced 3D Magnetic Resonance (DCE-MR volumes can result in images that depict and accurately characterize a variety of liver lesions. However, the diagnostic utility of subtraction images depends on the extent of co-registration between non-enhanced and enhanced volumes. Movement of liver structures during acquisition must be corrected prior to subtraction. Currently available methods are computer intensive. We report a new method for the dynamic subtraction of MR liver images that does not require excessive computer time. Methods Nineteen consecutive patients (median age 45 years; range 37–67 were evaluated by VIBE T1-weighted sequences (TR 5.2 ms, TE 2.6 ms, flip angle 20°, slice thickness 1.5 mm acquired before and 45s after contrast injection. Acquisition parameters were optimized for best portal system enhancement. Pre and post-contrast liver volumes were realigned using our 3D registration method which combines: (a rigid 3D translation using maximization of normalized mutual information (NMI, and (b fast 2D non-rigid registration which employs a complex discrete wavelet transform algorithm to maximize pixel phase correlation and perform multiresolution analysis. Registration performance was assessed quantitatively by NMI. Results The new registration procedure was able to realign liver structures in all 19 patients. NMI increased by about 8% after rigid registration (native vs. rigid registration 0.073 ± 0.031 vs. 0.078 ± 0.031, n.s., paired t-test and by a further 23% (0.096 ± 0.035 vs. 0.078 ± 0.031, p t-test after non-rigid realignment. The overall average NMI increase was 31%. Conclusion This new method for realigning dynamic contrast-enhanced 3D MR volumes of liver leads to subtraction images that enhance diagnostic possibilities for liver lesions.

  10. PSO-based methods for medical image registration and change assessment of pigmented skin

    Science.gov (United States)

    Kacenjar, Steve; Zook, Matthew; Balint, Michael

    2011-03-01

    There are various scientific and technological areas in which it is imperative to rapidly detect and quantify changes in imagery over time. In fields such as earth remote sensing, aerospace systems, and medical imaging, searching for timedependent, regional changes across deformable topographies is complicated by varying camera acquisition geometries, lighting environments, background clutter conditions, and occlusion. Under these constantly-fluctuating conditions, the use of standard, rigid-body registration approaches often fail to provide sufficient fidelity to overlay image scenes together. This is problematic because incorrect assessments of the underlying changes of high-level topography can result in systematic errors in the quantification and classification of interested areas. For example, in the current naked-eye detection strategies of melanoma, a dermatologist often uses static morphological attributes to identify suspicious skin lesions for biopsy. This approach does not incorporate temporal changes which suggest malignant degeneration. By performing the co-registration of time-separated skin imagery, a dermatologist may more effectively detect and identify early morphological changes in pigmented lesions; enabling the physician to detect cancers at an earlier stage resulting in decreased morbidity and mortality. This paper describes an image processing system which will be used to detect changes in the characteristics of skin lesions over time. The proposed system consists of three main functional elements: 1.) coarse alignment of timesequenced imagery, 2.) refined alignment of local skin topographies, and 3.) assessment of local changes in lesion size. During the coarse alignment process, various approaches can be used to obtain a rough alignment, including: 1.) a manual landmark/intensity-based registration method1, and 2.) several flavors of autonomous optical matched filter methods2. These procedures result in the rough alignment of a patient

  11. Cross validation of experts versus registration methods for target localization in deep brain stimulation.

    Science.gov (United States)

    Sánchez Castro, F Javier; Pollo, Claudio; Meuli, Reto; Maeder, Philippe; Cuadra, Meritxell Bach; Cuisenaire, Olivier; Villemure, Jean-Guy; Thiran, Jean-Philippe

    2005-01-01

    In the last five years, Deep Brain Stimulation (DBS) has become the most popular and effective surgical technique for the treatent of Parkinson's disease (PD). The Subthalamic Nucleus (STN) is the usual target involved when applying DBS. Unfortunately, the STN is in general not visible in common medical imaging modalities. Therefore, atlas-based segmentation is commonly considered to locate it in the images. In this paper, we propose a scheme that allows both, to perform a comparison between different registration algorithms and to evaluate their ability to locate the STN automatically. Using this scheme we can evaluate the expert variability against the error of the algorithms and we demonstrate that automatic STN location is possible and as accurate as the methods currently used.

  12. A computationally efficient method for automatic registration of orthogonal x-ray images with volumetric CT data

    Energy Technology Data Exchange (ETDEWEB)

    Chen Xin [ADSIP Research Centre, University of Central Lancashire, Preston (United Kingdom); Varley, Martin R [ADSIP Research Centre, University of Central Lancashire, Preston (United Kingdom); Shark, Lik-Kwan [ADSIP Research Centre, University of Central Lancashire, Preston (United Kingdom); Shentall, Glyn S [Rosemere Cancer Centre, Royal Preston Hospital, Preston (United Kingdom); Kirby, Mike C [Satellite Centres, Christie Hospital NHS Foundation Trust, Manchester (United Kingdom)

    2008-02-21

    The paper presents a computationally efficient 3D-2D image registration algorithm for automatic pre-treatment validation in radiotherapy. The novel aspects of the algorithm include (a) a hybrid cost function based on partial digitally reconstructed radiographs (DRRs) generated along projected anatomical contours and a level set term for similarity measurement; and (b) a fast search method based on parabola fitting and sensitivity-based search order. Using CT and orthogonal x-ray images from a skull and a pelvis phantom, the proposed algorithm is compared with the conventional ray-casting full DRR based registration method. Not only is the algorithm shown to be computationally more efficient with registration time being reduced by a factor of 8, but also the algorithm is shown to offer 50% higher capture range allowing the initial patient displacement up to 15 mm (measured by mean target registration error). For the simulated data, high registration accuracy with average errors of 0.53 mm {+-} 0.12 mm for translation and 0.61 deg, {+-} 0.29 deg. for rotation within the capture range has been achieved. For the tested phantom data, the algorithm has also shown to be robust without being affected by artificial markers in the image.

  13. A computationally efficient method for automatic registration of orthogonal x-ray images with volumetric CT data

    Science.gov (United States)

    Chen, Xin; Varley, Martin R.; Shark, Lik-Kwan; Shentall, Glyn S.; Kirby, Mike C.

    2008-02-01

    The paper presents a computationally efficient 3D-2D image registration algorithm for automatic pre-treatment validation in radiotherapy. The novel aspects of the algorithm include (a) a hybrid cost function based on partial digitally reconstructed radiographs (DRRs) generated along projected anatomical contours and a level set term for similarity measurement; and (b) a fast search method based on parabola fitting and sensitivity-based search order. Using CT and orthogonal x-ray images from a skull and a pelvis phantom, the proposed algorithm is compared with the conventional ray-casting full DRR based registration method. Not only is the algorithm shown to be computationally more efficient with registration time being reduced by a factor of 8, but also the algorithm is shown to offer 50% higher capture range allowing the initial patient displacement up to 15 mm (measured by mean target registration error). For the simulated data, high registration accuracy with average errors of 0.53 mm ± 0.12 mm for translation and 0.61° ± 0.29° for rotation within the capture range has been achieved. For the tested phantom data, the algorithm has also shown to be robust without being affected by artificial markers in the image.

  14. The interaction of luminance, velocity, and shape information in the perception of motion transparency, coherence, and non-rigid motion.

    Science.gov (United States)

    Jasinschi, R; Rosenfeld, A; Araújo, H J

    1993-01-01

    The perception of luminance transparency for superimposed patterns depends on how luminance, figural, and topological conditions are simultaneously satisfied. Motion transparency or coherence for two superimposed patterns, which correspond to the perception of both patterns moving across one another or to the perception of compound motion of the regions of pattern intersection, depends on the relation between the local velocity, luminance, and shape information. This study analyzes how luminance, shape, and local velocity interact in the perception of motion transparency and coherence. Psychophysical experiments done with sinusoidally modulated bar patterns are presented which show that the perception of motion transparency or coherence can be described as the result of the interaction of two integration modules: the velocity-luminance and the velocity-shape processes. The velocity-luminance process describes the integration of the local velocity with luminance information. When the luminance transparency rules are satisfied this process always generates the perception of motion transparency independently of the shape or contour information. On the other hand, when the luminance transparency rules are violated one can either perceive motion coherence or non-rigid motion; one perceives motion coherence when the patterns have small or zero amplitude, and non-rigid motion when the patterns have large amplitude. The velocity-shape process describes the integration of local velocity with shape information, and this depends on the relation between the error in the extraction of the local velocity and the magnitude of the contour amplitude. As a result of these experiments it is conjectured that the velocity-luminance and the velocity-shape processes do interact constructively or destructively. The constructive interaction occurs when the luminance transparency rules are satisfied. The destructive interaction occurs when the luminance transparency rules are violated, and

  15. A fully automatic image-to-world registration method for image-guided procedure with intraoperative imaging updates

    Science.gov (United States)

    Li, Senhu; Sarment, David

    2016-03-01

    Image-guided procedure with intraoperative imaging updates has made a big impact on minimally invasive surgery. Compact and mobile CT imaging device combining with current commercial available image guided navigation system is a legitimate and cost-efficient solution for a typical operating room setup. However, the process of manual fiducial-based registration between image and physical spaces (image-to-world) is troublesome for surgeons during the procedure, which results in much procedure interruptions and is the main source of registration errors. In this study, we developed a novel method to eliminate the manual registration process. Instead of using probe to manually localize the fiducials during the surgery, a tracking plate with known fiducial positions relative to the reference coordinates is designed and fabricated through 3D printing technique. The workflow and feasibility of this method has been studied through a phantom experiment.

  16. Fast and accurate marker-based projective registration method for uncalibrated transmission electron microscope tilt series.

    Science.gov (United States)

    Lee, Ho; Lee, Jeongjin; Shin, Yeong Gil; Lee, Rena; Xing, Lei

    2010-06-21

    This paper presents a fast and accurate marker-based automatic registration technique for aligning uncalibrated projections taken from a transmission electron microscope (TEM) with different tilt angles and orientations. Most of the existing TEM image alignment methods estimate the similarity between images using the projection model with least-squares metric and guess alignment parameters by computationally expensive nonlinear optimization schemes. Approaches based on the least-squares metric which is sensitive to outliers may cause misalignment since automatic tracking methods, though reliable, can produce a few incorrect trajectories due to a large number of marker points. To decrease the influence of outliers, we propose a robust similarity measure using the projection model with a Gaussian weighting function. This function is very effective in suppressing outliers that are far from correct trajectories and thus provides a more robust metric. In addition, we suggest a fast search strategy based on the non-gradient Powell's multidimensional optimization scheme to speed up optimization as only meaningful parameters are considered during iterative projection model estimation. Experimental results show that our method brings more accurate alignment with less computational cost compared to conventional automatic alignment methods.

  17. Continental deformation accommodated by non-rigid passive bookshelf faulting: An example from the Cenozoic tectonic development of northern Tibet

    Science.gov (United States)

    Zuza, Andrew V.; Yin, An

    2016-05-01

    Collision-induced continental deformation commonly involves complex interactions between strike-slip faulting and off-fault deformation, yet this relationship has rarely been quantified. In northern Tibet, Cenozoic deformation is expressed by the development of the > 1000-km-long east-striking left-slip Kunlun, Qinling, and Haiyuan faults. Each have a maximum slip in the central fault segment exceeding 10s to ~ 100 km but a much smaller slip magnitude (~rigid-body motion and flow-like distributed deformation end-member models for continental tectonics. Here we propose a non-rigid bookshelf-fault model for the Cenozoic tectonic development of northern Tibet. Our model, quantitatively relating discrete left-slip faulting to distributed off-fault deformation during regional clockwise rotation, explains several puzzling features, including the: (1) clockwise rotation of east-striking left-slip faults against the northeast-striking left-slip Altyn Tagh fault along the northwestern margin of the Tibetan Plateau, (2) alternating fault-parallel extension and shortening in the off-fault regions, and (3) eastward-tapering map-view geometries of the Qimen Tagh, Qaidam, and Qilian Shan thrust belts that link with the three major left-slip faults in northern Tibet. We refer to this specific non-rigid bookshelf-fault system as a passive bookshelf-fault system because the rotating bookshelf panels are detached from the rigid bounding domains. As a consequence, the wallrock of the strike-slip faults deforms to accommodate both the clockwise rotation of the left-slip faults and off-fault strain that arises at the fault ends. An important implication of our model is that the style and magnitude of Cenozoic deformation in northern Tibet vary considerably in the east-west direction. Thus, any single north-south cross section and its kinematic reconstruction through the region do not properly quantify the complex deformational processes of plateau formation.

  18. Combined use of a priori data for fast system self-calibration of a non-rigid multi-camera fringe projection system

    Science.gov (United States)

    Stavroulakis, Petros I.; Chen, Shuxiao; Sims-Waterhouse, Danny; Piano, Samanta; Southon, Nicholas; Bointon, Patrick; Leach, Richard

    2017-06-01

    In non-rigid fringe projection 3D measurement systems, where either the camera or projector setup can change significantly between measurements or the object needs to be tracked, self-calibration has to be carried out frequently to keep the measurements accurate1. In fringe projection systems, it is common to use methods developed initially for photogrammetry for the calibration of the camera(s) in the system in terms of extrinsic and intrinsic parameters. To calibrate the projector(s) an extra correspondence between a pre-calibrated camera and an image created by the projector is performed. These recalibration steps are usually time consuming and involve the measurement of calibrated patterns on planes, before the actual object can continue to be measured after a motion of a camera or projector has been introduced in the setup and hence do not facilitate fast 3D measurement of objects when frequent experimental setup changes are necessary. By employing and combining a priori information via inverse rendering, on-board sensors, deep learning and leveraging a graphics processor unit (GPU), we assess a fine camera pose estimation method which is based on optimising the rendering of a model of a scene and the object to match the view from the camera. We find that the success of this calibration pipeline can be greatly improved by using adequate a priori information from the aforementioned sources.

  19. HIGH-ACCURACY BAND TO BAND REGISTRATION METHOD FOR MULTI-SPECTRAL IMAGES OF HJ-1A/B

    Institute of Scientific and Technical Information of China (English)

    Lu Hao; Liu Tuanjie; Zhao Haiqing

    2012-01-01

    Band-to-band registration accuracy is an important parameter of multispectral data.A novel band-to-band registration approach with high precision is proposed for the multi-spectral images of HJ-1A/B.Firstly,the main causes resulted in misregistration are analyzed,and a high-order polynomial model is proposed.Secondly,a phase fringe filtering technique is employed to Phase Correlation Method based on Singular Value Decomposition (SVD-PCM) for reducing the noise in phase difference matrix.Then,experiments are carried out to build nonlinear registration models,and images of green band and red band are aligned to blue band with an accuracy of 0.1 pixels,while near infrared band with an accuracy of 0.2 pixels.

  20. a Registration Method of Point Clouds Collected by Mobile LIDAR Using Solely Standard Las Files Information

    Science.gov (United States)

    Gézero, L.; Antunes, C.

    2017-05-01

    In the last few years, LiDAR sensors installed in terrestrial vehicles have been revealed as an efficient method to collect very dense 3D georeferenced information. The possibility of creating very dense point clouds representing the surface surrounding the sensor, at a given moment, in a very fast, detailed and easy way, shows the potential of this technology to be used for cartography and digital terrain models production in large scale. However, there are still some limitations associated with the use of this technology. When several acquisitions of the same area with the same device, are made, differences between the clouds can be observed. The range of that differences can go from few centimetres to some several tens of centimetres, mainly in urban and high vegetation areas where the occultation of the GNSS system introduces a degradation of the georeferenced trajectory. Along this article a different method point cloud registration is proposed. In addition to the efficiency and speed of execution, the main advantages of the method are related to the fact that the adjustment is continuously made over the trajectory, based on the GPS time. The process is fully automatic and only information recorded in the standard LAS files is used, without the need for any auxiliary information, in particular regarding the trajectory.

  1. Transverse multibunch modes for non-rigid bunches, including mode coupling

    Energy Technology Data Exchange (ETDEWEB)

    Berg, J.S.; Ruth, R.D. [Stanford Linear Accelerator Center, Menlo Park, CA (United States)

    1996-08-01

    A method for computing transverse multibunch growth rates and frequency shifts in rings, which has been described previously, is applied to the PEP-II B factory. The method allows multibunch modes with different internal-bunch oscillation modes to couple to one another, similar to single-bunch mode coupling. Including coupling between the multibunch modes gives effects similar to those seen in single-bunch mode coupling. These effects occur at currents that are lower than the single-bunch mode coupling threshold. (author)

  2. Transverse multibunch modes for non-rigid bunches, including mode coupling

    Energy Technology Data Exchange (ETDEWEB)

    Bert, J.S.; Ruth, R.D.

    1995-08-01

    A method for computing transverse multibunch growth rates and frequency shifts in rings, which has been described previously, is applied to the PEP-II B factory. The method allows multibunch modes with different internal-bunch oscillation modes to couple to one another, similar to single-bunch mode coupling. Including coupling between the multibunch modes gives effects similar to those seen in single-bunch mode coupling. These effects occur at currents that are lower than the single-bunch mode coupling threshold.

  3. Real time non-rigid surface detection based on binary robust independent elementary features

    Directory of Open Access Journals (Sweden)

    Chuin-Mu Wang

    2015-04-01

    Full Text Available The surface deformation detection of an object has been a very popular research project in recent years; in human vision, we can easily detect the location of the target and that scale of the surface rotation, and change of the viewpoint makes the surface deformation, but in a vision of the computer is a challenge. In those backgrounds of questions, we can propose a framework that is the surface deformation, which is based on the detection method of BRIEF to calculate object surface deformation. But BRIEF calculation has some problem that can’t rotate and change character; we also propose a useful calculation method to solve the problem, and the method proved by experiment can overcome the problem, by the way, it's very useful. The average operation time every picture in continuous image is 50∼80 ms in 2.5 GHz computer, let us look back for some related estimation technology of surface deformation, and there are still a few successful project that is surface deformation detection in the document.

  4. An efficient strategy based on an individualized selection of registration methods. Application to the coregistration of MR and SPECT images in neuro-oncology

    Science.gov (United States)

    Tacchella, Jean-Marc; Roullot, Elodie; Lefort, Muriel; Cohen, Mike-Ely; Guillevin, Rémy; Petrirena, Grégorio; Delattre, Jean-Yves; Habert, Marie-Odile; Yeni, Nathanaëlle; Kas, Aurélie; Frouin, Frédérique

    2014-11-01

    An efficient registration strategy is described that aims to help solve delicate medical imaging registration problems. It consists of running several registration methods for each dataset and selecting the best one for each specific dataset, according to an evaluation criterion. Finally, the quality of the registration results, obtained with the best method, is visually scored by an expert as excellent, correct or poor. The strategy was applied to coregister Technetium-99m Sestamibi SPECT and MRI data in the framework of a follow-up protocol in patients with high grade gliomas receiving antiangiogenic therapy. To adapt the strategy to this clinical context, a robust semi-automatic evaluation criterion based on the physiological uptake of the Sestamibi tracer was defined. A panel of eighteen multimodal registration algorithms issued from BrainVisa, SPM or AIR software environments was systematically applied to the clinical database composed of sixty-two datasets. According to the expert visual validation, this new strategy provides 85% excellent registrations, 12% correct ones and only 3% poor ones. These results compare favorably to the ones obtained by the globally most efficient registration method over the whole database, for which only 61% of excellent registration results have been reported. Thus the registration strategy in its current implementation proves to be suitable for clinical application.

  5. Coherent modes for multiple non-rigid bunches in a storage ring

    Energy Technology Data Exchange (ETDEWEB)

    Berg, J.S.

    1996-03-01

    A method is presented for determining the stability of a system consisting of several highly relativistic bunches of charged particles circulating in a storage ring. The particles interact with magnets designed to guide the beam as well as with electromagnetic fields induced by the particles themselves. Previous work has considered modes where all bunches in the ring are executing the same type of internal oscillation. This dissertation considers the results of allowing those modes to couple to one another. The formalism begins with a self-consistent distribution, and analyzes small perturbations to that distribution to determine if they grow exponentially. The formalism allows one to do this computation for an arbitrary magnetic lattice, as well as an arbitrary distribution of wakefield sources around the ring. The method also allows for the inclusion of a feedback system which is designed to damp multibunch oscillations. The PEP-II B-factory with a linear lattice is used as an example to demonstrate and explain the phenomenology that results from this coupling of multibunch modes. The effect of adding feedback is also explored.

  6. Evaluation of skin and muscular deformations in a non-rigid motion analysis

    Science.gov (United States)

    Goffredo, Michela; Carli, Marco; Conforto, Silvia; Bibbo, Daniele; Neri, Alessandro; D'Alessio, Tommaso

    2005-04-01

    During contraction and stretching, muscles change shape and size, and produce a deformation of skin tissues and a modification of the body segment shape. In human motion analysis, it is indispensable to take into account this phenomenon and thus approximating body limbs to rigid structures appears as restrictive. The present work aims at evaluating skin and muscular deformation, and at modeling body segment elastic behavior by analysing video sequences that capture a sport gesture. The soft tissue modeling is accomplished by using triangular meshes that automatically adapt to the body segment during the execution of a static muscle contraction. The adaptive triangular mesh is built on reference points whose motion is estimated by using the technique based on Gauss Laguerre Expansion. Promising results have been obtained by applying the proposed method to a video sequence, where an upper arm isometric contraction was present.

  7. African American Organ Donor Registration: A Mixed Methods Design using the Theory of Planned Behavior

    Science.gov (United States)

    DuBay, Derek A.; Ivankova, Nataliya; Herby, Ivan; Wynn, Theresa A.; Kohler, Connie; Berry, Beverly; Foushee, Herman; Carson, April; Redden, David T.; Holt, Cheryl; Siminoff, Laura; Fouad, Mona; Martin, Michelle Y.

    2015-01-01

    Context A large racial disparity exists in organ donation. Objective The purpose of this study was to identify factors associated with becoming a registered organ donor in among African Americans in Alabama. Methods The study utilized a concurrent mixed methods design guided by the Theory of Planned Behavior to analyze African American’s decisions to become a registered organ donor using both qualitative (focus groups) and quantitative (survey) methods. Results The sample consisted of 22 registered organ donors (ROD) and 65 non-registered participants (NRP) from six focus groups completed in urban (n=3) and rural (n=3) areas. Participants emphasized the importance of the autonomy to make one’s own organ donation decision and have this decision honored posthumously. One novel barrier to becoming a ROD was the perception that organs from African Americans were often unusable due to high prevalence of chronic medical conditions such as diabetes and hypertension. Another novel theme discussed as an advantage to becoming a ROD was the subsequent motivation to take responsibility for one’s health. Family and friends were the most common groups of persons identified as approving and disapproving of the decision to become a ROD. The most common facilitator to becoming a ROD was information, while fear and the lack of information were the most common barriers. In contrast, religious beliefs, mistrust and social justice themes were infrequently referenced as barriers to becoming a ROD. Discussion Findings from this study may be useful for prioritizing organ donation community-based educational interventions in campaigns to increase donor registration. PMID:25193729

  8. Studying primate carpal kinematics in three dimensions using a computed-tomography-based markerless registration method.

    Science.gov (United States)

    Orr, Caley M; Leventhal, Evan L; Chivers, Spencer F; Marzke, Mary W; Wolfe, Scott W; Crisco, Joseph J

    2010-04-01

    The functional morphology of the wrist pertains to a number of important questions in primate evolutionary biology, including that of hominins. Reconstructing locomotor and manipulative capabilities of the wrist in extinct species requires a detailed understanding of wrist biomechanics in extant primates and the relationship between carpal form and function. The kinematics of carpal movement, and the role individual joints play in providing mobility and stability of the wrist, is central to such efforts. However, there have been few detailed biomechanical studies of the nonhuman primate wrist. This is largely because of the complexity of wrist morphology and the considerable technical challenges involved in tracking the movements of the many small bones that compose the carpus. The purpose of this article is to introduce and outline a method adapted from human clinical studies of three-dimensional (3D) carpal kinematics for use in a comparative context. The method employs computed tomography of primate cadaver forelimbs in increments throughout the wrist's range of motion, coupled with markerless registration of 3D polygon models based on inertial properties of each bone. The 3D kinematic principles involved in extracting motion axis parameters that describe bone movement are reviewed. In addition, a set of anatomically based coordinate systems embedded in the radius, capitate, hamate, lunate, and scaphoid is presented for the benefit of other primate functional morphologists interested in studying carpal kinematics. Finally, a brief demonstration of how the application of these methods can elucidate the mechanics of the wrist in primates illustrates the closer-packing of carpals in chimpanzees than in orangutans, which may help to stabilize the midcarpus and produce a more rigid wrist beneficial for efficient hand posturing during knuckle-walking locomotion.

  9. Multi-modal inter-subject registration of mouse brain images

    Science.gov (United States)

    Li, Xia; Yankeelov, Thomas E.; Rosen, Glenn; Gore, John C.; Dawant, Benoit M.

    2006-03-01

    The importance of small animal imaging in fundamental and clinical research is growing rapidly. These studies typically involve micro PET, micro MR, and micro CT images as well as optical or fluorescence images. Histological images are also often used to complement and/or validate the in vivo data. As is the case for human studies, automatic registration of these imaging modalities is a critical component of the overall analysis process, but, the small size of the animals and thus the limited spatial resolution of the in vivo images present specific challenges. In this paper, we propose a series of methods and techniques that permit the inter-subject registration of micro MR and histological images. We then compare results obtained by registering directly MR volumes to each other using a non-rigid registration algorithm we have developed at our institution with results obtained by registering first the MR volumes to their corresponding histological volume, which we reconstruct from 2D cross-sections, and then registering histological volumes to each other. We show that the second approach is preferable.

  10. Inter and intra-modal deformable registration: continuous deformations meet efficient optimal linear programming.

    Science.gov (United States)

    Glocker, Ben; Paragios, Nikos; Komodakis, Nikos; Tziritas, Georgios; Navab, Nassir

    2007-01-01

    In this paper we propose a novel non-rigid volume registration based on discrete labeling and linear programming. The proposed framework reformulates registration as a minimal path extraction in a weighted graph. The space of solutions is represented using a set of a labels which are assigned to predefined displacements. The graph topology corresponds to a superimposed regular grid onto the volume. Links between neighborhood control points introduce smoothness, while links between the graph nodes and the labels (end-nodes) measure the cost induced to the objective function through the selection of a particular deformation for a given control point once projected to the entire volume domain, Higher order polynomials are used to express the volume deformation from the ones of the control points. Efficient linear programming that can guarantee the optimal solution up to (a user-defined) bound is considered to recover the optimal registration parameters. Therefore, the method is gradient free, can encode various similarity metrics (simple changes on the graph construction), can guarantee a globally sub-optimal solution and is computational tractable. Experimental validation using simulated data with known deformation, as well as manually segmented data demonstrate the extreme potentials of our approach.

  11. Automatic registration of imaging mass spectrometry data to the Allen Brain Atlas transcriptome

    Science.gov (United States)

    Abdelmoula, Walid M.; Carreira, Ricardo J.; Shyti, Reinald; Balluff, Benjamin; Tolner, Else; van den Maagdenberg, Arn M. J. M.; Lelieveldt, B. P. F.; McDonnell, Liam; Dijkstra, Jouke

    2014-03-01

    Imaging Mass Spectrometry (IMS) is an emerging molecular imaging technology that provides spatially resolved information on biomolecular structures; each image pixel effectively represents a molecular mass spectrum. By combining the histological images and IMS-images, neuroanatomical structures can be distinguished based on their biomolecular features as opposed to morphological features. The combination of IMS data with spatially resolved gene expression maps of the mouse brain, as provided by the Allen Mouse Brain atlas, would enable comparative studies of spatial metabolic and gene expression patterns in life-sciences research and biomarker discovery. As such, it would be highly desirable to spatially register IMS slices to the Allen Brain Atlas (ABA). In this paper, we propose a multi-step automatic registration pipeline to register ABA histology to IMS- images. Key novelty of the method is the selection of the best reference section from the ABA, based on pre-processed histology sections. First, we extracted a hippocampus-specific geometrical feature from the given experimental histological section to initially localize it among the ABA sections. Then, feature-based linear registration is applied to the initially localized section and its two neighbors in the ABA to select the most similar reference section. A non-rigid registration yields a one-to-one mapping of the experimental IMS slice to the ABA. The pipeline was applied on 6 coronal sections from two mouse brains, showing high anatomical correspondence, demonstrating the feasibility of complementing biomolecule distributions from individual mice with the genome-wide ABA transcriptome.

  12. Influence of image registration on ADC images computed from free-breathing diffusion MRIs of the abdomen

    Science.gov (United States)

    Guyader, Jean-Marie; Bernardin, Livia; Douglas, Naomi H. M.; Poot, Dirk H. J.; Niessen, Wiro J.; Klein, Stefan

    2014-03-01

    The apparent diffusion coefficient (ADC) is an imaging biomarker providing quantitative information on the diffusion of water in biological tissues. This measurement could be of relevance in oncology drug development, but it suffers from a lack of reliability. ADC images are computed by applying a voxelwise exponential fitting to multiple diffusion-weighted MR images (DW-MRIs) acquired with different diffusion gradients. In the abdomen, respiratory motion induces misalignments in the datasets, creating visible artefacts and inducing errors in the ADC maps. We propose a multistep post-acquisition motion compensation pipeline based on 3D non-rigid registrations. It corrects for motion within each image and brings all DW-MRIs to a common image space. The method is evaluated on 10 datasets of free-breathing abdominal DW-MRIs acquired from healthy volunteers. Regions of interest (ROIs) are segmented in the right part of the abdomen and measurements are compared in the three following cases: no image processing, Gaussian blurring of the raw DW-MRIs and registration. Results show that both blurring and registration improve the visual quality of ADC images, but compared to blurring, registration yields visually sharper images. Measurement uncertainty is reduced both by registration and blurring. For homogeneous ROIs, blurring and registration result in similar median ADCs, which are lower than without processing. In a ROI at the interface between liver and kidney, registration and blurring yield different median ADCs, suggesting that uncorrected motion introduces a bias. Our work indicates that averaging procedures on the scanner should be avoided, as they remove the opportunity to perform motion correction.

  13. Scale Space Graph Representation and Kernel Matching for Non Rigid and Textured 3D Shape Retrieval.

    Science.gov (United States)

    Garro, Valeria; Giachetti, Andrea

    2016-06-01

    In this paper we introduce a novel framework for 3D object retrieval that relies on tree-based shape representations (TreeSha) derived from the analysis of the scale-space of the Auto Diffusion Function (ADF) and on specialized graph kernels designed for their comparison. By coupling maxima of the Auto Diffusion Function with the related basins of attraction, we can link the information at different scales encoding spatial relationships in a graph description that is isometry invariant and can easily incorporate texture and additional geometrical information as node and edge features. Using custom graph kernels it is then possible to estimate shape dissimilarities adapted to different specific tasks and on different categories of models, making the procedure a powerful and flexible tool for shape recognition and retrieval. Experimental results demonstrate that the method can provide retrieval scores similar or better than state-of-the-art on textured and non textured shape retrieval benchmarks and give interesting insights on effectiveness of different shape descriptors and graph kernels.

  14. d-Orbital Effects on Stereochemical Non-Rigidity: Twisted Ti IV Intramolecular Dynamics

    Energy Technology Data Exchange (ETDEWEB)

    Davis, Anna V.; Firman, Timothy K.; Hay, Benjamin P.; Raymond, Kenneth N.

    2006-07-26

    The isomerization dynamics of tris-catecholate complexes have been investigated by variable temperature NMR methods, demonstrating that the intramolecular racemization of ? and ? enantiomers of d0 TiIV is facile and faster than that of d10 GaIII and GeIV analogs. Activation parameters for the racemization of K2[Ti23] (H22 = 2,3-dihydroxy-N,N?-diisopropylterephthalamide) were determined from lineshape analysis of 1H NMR spectra (methanol-d4: ?H? = 47(1) kJ/mol; ?S? = -34(4) J/molK; ?G?298 = 57(3) kJ/mol; DMF-d7: ?H? = 55(1) kJ/mol; ?S? = -16(4) J/molK; ?G?298 = 59(3) kJ/mol; D2O (pD* = 8.6, 20% MeOD): ?H? = 48(3) kJ/mol; ?S? = -28(10) J/molK; ?G?298 = 56(3) kJ/mol). The study of K2[Ti43] (H24 = 2,3-dihydroxy-N-tert-butyl-N?-benzylterephthalamide) reveals two distinct isomerization processes: faster racemization of mer-[Ti43]2- by way of a Bailar twist mechanism (D3h transition state) (Tc ? 242 K, methanol-d4), and a slower mer/fac-[Ti43]2- isomerization by way of a R?y-Dutt mechanism (C2v transition state) (Tc ? 281 K, methanol-d4). The solution behavior of the TiIV complexes mirrors that reported previously for analogous GaIII complexes, while that of analogous GeIV complexes was too inert to be detected by 1H NMR up to 400 K. These experimental findings are augmented by DFT calculations of the ML3 grounds states and Bailar and R?y-Dutt transition states, which correctly predict the relative kinetic barriers of the three metal ions, in addition to faithfully reproducing the ground state structures. Orbital calculations support the conclusion that participation of the TiIV d0 orbitals in ligand bonding contributes to the greater stabilization of the prismatic TiIV transition states. Battelle operates the Pacific Northwest National Laboratory for the U.S. Department of Energy.

  15. Diffusion Maps for Multimodal Registration

    Directory of Open Access Journals (Sweden)

    Gemma Piella

    2014-06-01

    Full Text Available Multimodal image registration is a difficult task, due to the significant intensity variations between the images. A common approach is to use sophisticated similarity measures, such as mutual information, that are robust to those intensity variations. However, these similarity measures are computationally expensive and, moreover, often fail to capture the geometry and the associated dynamics linked with the images. Another approach is the transformation of the images into a common space where modalities can be directly compared. Within this approach, we propose to register multimodal images by using diffusion maps to describe the geometric and spectral properties of the data. Through diffusion maps, the multimodal data is transformed into a new set of canonical coordinates that reflect its geometry uniformly across modalities, so that meaningful correspondences can be established between them. Images in this new representation can then be registered using a simple Euclidean distance as a similarity measure. Registration accuracy was evaluated on both real and simulated brain images with known ground-truth for both rigid and non-rigid registration. Results showed that the proposed approach achieved higher accuracy than the conventional approach using mutual information.

  16. Synthesis, modelling and NK1 antagonist evaluation of a non-rigid cyclopropane-containing analogue of CP-99,994.

    Science.gov (United States)

    Aitken, D J; Ongeri, S; Vallée-Goyet, D; Gramain, J C; Husson, H P

    2001-03-12

    A non-rigid cyclopropane-containing diamine analogue of CP-99,994 was synthesised and was found to have only moderate NK1 receptor binding affinity. Molecular dynamics calculations of the conformational space of the former compound gave good correlation between observed activity and a recently published pharmacophore model, lending predictive value to the latter.

  17. Calculation of the temperature of asphalt concrete at making the joints of multilane road pavement of non-rigid type

    Directory of Open Access Journals (Sweden)

    Giyasov Botir Iminzhonovich

    2015-03-01

    Full Text Available The construction quality of road surface of non-rigid type essentially depend on providing the temperature regimes in the process of laying and packing of hot asphalt concrete mixtures. In order to provide the required characteristics of asphalt concrete due to the surface width it is necessary to provide the temperature regimes of hot asphalt concrete mixture in the zones of lane connection. The hot mixture is promptly cooling right after laying within several minutes, which results, according to the construction technology and the specific conditions of work production, in temperature abuse of the mixture at joints of the lanes at packing. The authors present the analysis of the technology of arranging multilane road surface by one paver with the possibility of heating the surface lane edge with the temperature of the adjacent lane. The results of the studies of the production conditions effect on the temperature of edge heating of the previously laid lanes, and the time required to achieve the maximum heating temperature depending on the relative thickness of coating layers.

  18. Physical Constraint Finite Element Model for Medical Image Registration.

    Directory of Open Access Journals (Sweden)

    Jingya Zhang

    Full Text Available Due to being derived from linear assumption, most elastic body based non-rigid image registration algorithms are facing challenges for soft tissues with complex nonlinear behavior and with large deformations. To take into account the geometric nonlinearity of soft tissues, we propose a registration algorithm on the basis of Newtonian differential equation. The material behavior of soft tissues is modeled as St. Venant-Kirchhoff elasticity, and the nonlinearity of the continuum represents the quadratic term of the deformation gradient under the Green- St.Venant strain. In our algorithm, the elastic force is formulated as the derivative of the deformation energy with respect to the nodal displacement vectors of the finite element; the external force is determined by the registration similarity gradient flow which drives the floating image deforming to the equilibrium condition. We compared our approach to three other models: 1 the conventional linear elastic finite element model (FEM; 2 the dynamic elastic FEM; 3 the robust block matching (RBM method. The registration accuracy was measured using three similarities: MSD (Mean Square Difference, NC (Normalized Correlation and NMI (Normalized Mutual Information, and was also measured using the mean and max distance between the ground seeds and corresponding ones after registration. We validated our method on 60 image pairs including 30 medical image pairs with artificial deformation and 30 clinical image pairs for both the chest chemotherapy treatment in different periods and brain MRI normalization. Our method achieved a distance error of 0.320±0.138 mm in x direction and 0.326±0.111 mm in y direction, MSD of 41.96±13.74, NC of 0.9958±0.0019, NMI of 1.2962±0.0114 for images with large artificial deformations; and average NC of 0.9622±0.008 and NMI of 1.2764±0.0089 for the real clinical cases. Student's t-test demonstrated that our model statistically outperformed the other methods in

  19. Dental non-linear image registration and collection method with 3D reconstruction and change detection

    Science.gov (United States)

    Rahmes, Mark; Fagan, Dean; Lemieux, George

    2017-03-01

    The capability of a software algorithm to automatically align same-patient dental bitewing and panoramic x-rays over time is complicated by differences in collection perspectives. We successfully used image correlation with an affine transform for each pixel to discover common image borders, followed by a non-linear homography perspective adjustment to closely align the images. However, significant improvements in image registration could be realized if images were collected from the same perspective, thus facilitating change analysis. The perspective differences due to current dental image collection devices are so significant that straightforward change analysis is not possible. To address this, a new custom dental tray could be used to provide the standard reference needed for consistent positioning of a patient's mouth. Similar to sports mouth guards, the dental tray could be fabricated in standard sizes from plastic and use integrated electronics that have been miniaturized. In addition, the x-ray source needs to be consistently positioned in order to collect images with similar angles and scales. Solving this pose correction is similar to solving for collection angle in aerial imagery for change detection. A standard collection system would provide a method for consistent source positioning using real-time sensor position feedback from a digital x-ray image reference. Automated, robotic sensor positioning could replace manual adjustments. Given an image set from a standard collection, a disparity map between images can be created using parallax from overlapping viewpoints to enable change detection. This perspective data can be rectified and used to create a three-dimensional dental model reconstruction.

  20. METHOD OF INFRARED SPECTRA REGISTRATION OF ACTIVATED CARBONS IN POTASSIUM BROMIDE PELLETS

    Directory of Open Access Journals (Sweden)

    Diana Shepel

    2015-06-01

    Full Text Available This communication is devoted to the elaboration of a new optimal technique of infrared spectra registration of activated carbons in potassium bromide pellets. Authors investigated the dependence of the intensity of the least overlapping infrared bands of activated carbons on the conditions of preparation, recording of the spectrum, and the degree of homogenization with KBr.

  1. Registration Service

    CERN Multimedia

    GS Department

    2010-01-01

    Following a reorganization in Building 55, please note that the Registration Service is now organised as follows :  Ground floor: access cards (76903). 1st floor : registration of external firms’ personnel (76611 / 76622); car access stickers (76633); biometric registration (79710). Opening hours: 07-30 to 16-00 non-stop. GS-SEM Group General Infrastructure Services Department

  2. Evaluation of five image registration tools for abdominal CT: pitfalls and opportunities with soft anatomy

    Science.gov (United States)

    Lee, Christopher P.; Xu, Zhoubing; Burke, Ryan P.; Baucom, Rebeccah; Poulose, Benjamin K.; Abramson, Richard G.; Landman, Bennett A.

    2015-03-01

    Image registration has become an essential image processing technique to compare data across time and individuals. With the successes in volumetric brain registration, general-purpose software tools are beginning to be applied to abdominal computed tomography (CT) scans. Herein, we evaluate five current tools for registering clinically acquired abdominal CT scans. Twelve abdominal organs were labeled on a set of 20 atlases to enable assessment of correspondence. The 20 atlases were pairwise registered based on only intensity information with five registration tools (affine IRTK, FNIRT, Non-Rigid IRTK, NiftyReg, and ANTs). Following the brain literature, the Dice similarity coefficient (DSC), mean surface distance, and Hausdorff distance were calculated on the registered organs individually. However, interpretation was confounded due to a significant proportion of outliers. Examining the retrospectively selected top 1 and 5 atlases for each target revealed that there was a substantive performance difference between methods. To further our understanding, we constructed majority vote segmentation with the top 5 DSC values for each organ and target. The results illustrated a median improvement of 85% in DSC between the raw results and majority vote. These experiments show that some images may be well registered to some targets using the available software tools, but there is significant room for improvement and reveals the need for innovation and research in the field of registration in abdominal CTs. If image registration is to be used for local interpretation of abdominal CT, great care must be taken to account for outliers (e.g., atlas selection in statistical fusion).

  3. Detailed analysis of the density change on chest CT of COPD using non-rigid registration of inspiration/expiration CT scans

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Eun Young [Chonbuk National University Medical School and Hospital, Research Institute of Clinical Medicine, Department of Radiology, Jeollabuk-do (Korea, Republic of); University of Ulsan College of Medicine, Asan Medical Center, Department of Radiology and Research Institute of Radiology, Seoul (Korea, Republic of); Seo, Joon Beom; Lee, Hyun Joo; Kim, Namkug; Lee, Eunsol; Lee, Sang Min; Oh, Sang Young [University of Ulsan College of Medicine, Asan Medical Center, Department of Radiology and Research Institute of Radiology, Seoul (Korea, Republic of); Hwang, Hye Jeon [Hallym University Sacred Heart Hospital, Department of Radiology, Hallym University College of Medicine, Gyeonggi-do (Korea, Republic of); Oh, Yeon-Mok; Lee, Sang-Do [University of Ulsan College of Medicine, Asan Medical Center, Department of Pulmonary and Critical Care Medicine, and Clinical Research Center for Chronic Obstructive Airway Diseases, Seoul (Korea, Republic of)

    2014-09-14

    One objective was to evaluate the air trapping index (ATI), measured by inspiration/expiration CT, in COPD patients and nonsmokers. Another objective was to assess the association between the pulmonary function test (PFT) and CT parameters such as ATI or other indices, separately in the whole lung, in emphysema, and in hyperinflated and normal lung areas. One hundred and thirty-eight COPD patients and 29 nonsmokers were included in our study. The ATI, the emphysema index (EI), the gas trapping index (Exp -856) and expiration/inspiration ratio of mean lung density (E/Iratio of MLD) were measured on CT. The values of the whole lung, of emphysema, and of hyperinflated and normal lung areas were compared and then correlated with various PFT parameters. Compared with nonsmokers, COPD patients showed a higher ATI in the whole lung and in each lung lesion (all P < 0.05). The ATI showed a higher correlation than EI with FEF{sub 25-75%}, RV and RV/TLC, and was comparable to Exp -856 and the E/I ratio of MLD. The ATI of emphysema and hyperinflated areas on CT showed better correlation than the normal lung area with PFT parameters. Detailed analysis of density change at inspiration and expiration CT of COPD can provide new insights into pulmonary functional impairment in each lung area. (orig.)

  4. Non-Rigid Registration with Simultaneously Matched Intensity and Shape%灰度与形状同步匹配的非刚性配准研究

    Institute of Scientific and Technical Information of China (English)

    林相波; 邱天爽; 阮素; Frédéric Nicolier

    2009-01-01

    基于灰度的非刚性配准算法一般假设参考图像和浮动图像对应结构之间的灰度保持一致,然而在基于图谱的图像配准应用中,这种假设往往不符合实际.本文在给出一种可以同时校正灰度和形状差异的弹性配准算法的同时,针对该算法不能校正局部微小形变的弱点,提出采用自由项变换的方法进行校正以提高配准精度.配准实验基于20个IBSR真实脑部MRI图像,结果表明配准后图像与参考图像间的互相关系数得到明显提高.实验证明,本文提出的方法不仅能够同时校正形状差异和灰度变化,而且具有较高的配准质量.

  5. Creation of 3D digital anthropomorphic phantoms which model actual patient non-rigid body motion as determined from MRI and position tracking studies of volunteers

    Science.gov (United States)

    Connolly, C. M.; Konik, A.; Dasari, P. K. R.; Segars, P.; Zheng, S.; Johnson, K. L.; Dey, J.; King, M. A.

    2011-03-01

    Patient motion can cause artifacts, which can lead to difficulty in interpretation. The purpose of this study is to create 3D digital anthropomorphic phantoms which model the location of the structures of the chest and upper abdomen of human volunteers undergoing a series of clinically relevant motions. The 3D anatomy is modeled using the XCAT phantom and based on MRI studies. The NURBS surfaces of the XCAT are interactively adapted to fit the MRI studies. A detailed XCAT phantom is first developed from an EKG triggered Navigator acquisition composed of sagittal slices with a 3 x 3 x 3 mm voxel dimension. Rigid body motion states are then acquired at breath-hold as sagittal slices partially covering the thorax, centered on the heart, with 9 mm gaps between them. For non-rigid body motion requiring greater sampling, modified Navigator sequences covering the entire thorax with 3 mm gaps between slices are obtained. The structures of the initial XCAT are then adapted to fit these different motion states. Simultaneous to MRI imaging the positions of multiple reflective markers on stretchy bands about the volunteer's chest and abdomen are optically tracked in 3D via stereo imaging. These phantoms with combined position tracking will be used to investigate both imaging-data-driven and motion-tracking strategies to estimate and correct for patient motion. Our initial application will be to cardiacperfusion SPECT imaging where the XCAT phantoms will be used to create patient activity and attenuation distributions for each volunteer with corresponding motion tracking data from the markers on the body-surface. Monte Carlo methods will then be used to simulate SPECT acquisitions, which will be used to evaluate various motion estimation and correction strategies.

  6. SU-E-J-266: A Pitfall of a Deformable Image Registration in Lung Cancer

    Energy Technology Data Exchange (ETDEWEB)

    Sugawara, Y [The National Center for Global Health and Medicine, Shinjuku, Tokyo (Japan); Tachibana, H [The National Cancer Center Hospital East, Kashiwa, Chiba (Japan); Moriya, S [Komazawa University, Setagaya, Tokyo (Japan); Sawant, A [UT Southwestern Medical Center, Dallas, TX (United States)

    2014-06-01

    Purpose: For four-dimensional (4D) planning and adaptive radiotherapy, deformable image registration (DIR) is needed and the accuracy is essential. We evaluated the accuracy of one free-downloadable DIR software library package (NiftyReg) and one commercial DIR software (MIM) in lung SBRT cancer patients. Methods: A rigid and non-rigid registrations were implemented to our in-house software. The non-rigid registration algorithm of the NiftyReg and MIM was based on the free-form deformation. The accuracy of the two software was evaluated when contoured structures to peak-inhale and peak-exhale 4DCT image data sets were measured using the dice similarity coefficient (DSC). The evaluation was performed in 20 lung SBRT patients. Results: In our visual evaluation, the eighteen cases show good agreement between the deformed structures for the peak-inhale phase and the peak-exhale phase structures (more than 0.8 DSC value). In the evaluation of the DSC in-house software, averaged DSC values of GTV and lung, heart, spinal cord, stomach and body were 0.862 and 0.979, 0.932, 0.974, 0.860, 0.998, respectively. As the Resultof the registration using the MIM program in the two cases which had less than 0.7 DSC value when analyzed using the in-house software, the DSC value were improved to 0.8. The CT images in a case with low DSC value shows the tumor was surrounded by the structure with the similar CT values, which were the chest wall or the diaphragm. Conclusion: Not only a free-downloadable DIR software but also a commercial software may provide unexpected results and there is a possibility that the results would make us misjudge the treatment planning. Therefore, we recommend that a commissioning test of any DIR software should be performed before clinical use and we should understand the characteristics of the software.

  7. Numerical Methods for Coupled Reconstruction and Registration in Digital Breast Tomosynthesis

    CERN Document Server

    Yang, Guang; Hawkes, David J; Arridge, Simon R

    2013-01-01

    Digital Breast Tomosynthesis (DBT) provides an insight into the fine details of normal fibroglandular tissues and abnormal lesions by reconstructing a pseudo-3D image of the breast. In this respect, DBT overcomes a major limitation of conventional X-ray mammography by reducing the confounding effects caused by the superposition of breast tissue. In a breast cancer screening or diagnostic context, a radiologist is interested in detecting change, which might be indicative of malignant disease. To help automate this task image registration is required to establish spatial correspondence between time points. Typically, images, such as MRI or CT, are first reconstructed and then registered. This approach can be effective if reconstructing using a complete set of data. However, for ill-posed, limited-angle problems such as DBT, estimating the deformation is complicated by the significant artefacts associated with the reconstruction, leading to severe inaccuracies in the registration. This paper presents a mathemati...

  8. Image Registration of Cochlear µCT Data Using Heat Distribution Similarity

    DEFF Research Database (Denmark)

    Kjer, Hans Martin; Vera, Sergio; Fagertun, Jens;

    2015-01-01

    Better understanding of the anatomical variability of the human cochlear is important for the design and function of Cochlear Implants. Good non-rigid alignment of high-resolution cochlear μCT data is a challenging task. In this paper we study the use of heat distribution similarity between sampl...... as an anatomical registration prior. We set-up and present our heat distribution model for the cochlea and utilize it in a typical cubic B-spline registration model. Evaluation and comparison is done against a corresponding normal registration of binary segmentations....

  9. Validation of Shape Context Based Image Registration Method Using Digital Image Correlation Measurement on a Rat Stomach

    DEFF Research Database (Denmark)

    Liao, Donghua; Wang, P; Zhao, Jingbo

    2014-01-01

    needs to be further verified by using a feature tracking measurement. Hence, the aim of this study was to verify the SC method-based calculation by using digital image correlation (DIC) measurement on a rat stomach. The rat stomach exposed to distension pressures 0.0, 0.2, 0.4, and 0.6 kPa were studied...... and quantitative agreement on the surfaces with small dissimilarity and small sample count difference between the reference surface and the target surface. In conclusion, this is the first study to validate the 3D SC-based image registration method by using unique tracking features measurement. The developed...

  10. Motion tracking in the liver: Validation of a method based on 4D ultrasound using a nonrigid registration technique

    Energy Technology Data Exchange (ETDEWEB)

    Vijayan, Sinara, E-mail: sinara.vijayan@ntnu.no [Norwegian University of Science and Technology, 7491 Trondheim (Norway); Klein, Stefan [Norwegian University of Science and Technology, 7491 Trondheim, Norway and Biomedical Imaging Group Rotterdam, Department of Medical Informatics and Radiology, Erasmus MC, 3000 CA Rotterdam (Netherlands); Hofstad, Erlend Fagertun; Langø, Thomas [SINTEF, Department Medical Technology, 7465 Trondheim (Norway); Lindseth, Frank [Norwegian University of Science and Technology, 7491 Trondheim, Norway and SINTEF, Department Medical Technology, 7465 Trondheim (Norway); Ystgaard, Brynjulf [Department of Surgery, St. Olavs Hospital, 7030 Trondheim (Norway)

    2014-08-15

    Purpose: Treatments like radiotherapy and focused ultrasound in the abdomen require accurate motion tracking, in order to optimize dosage delivery to the target and minimize damage to critical structures and healthy tissues around the target. 4D ultrasound is a promising modality for motion tracking during such treatments. In this study, the authors evaluate the accuracy of motion tracking in the liver based on deformable registration of 4D ultrasound images. Methods: The offline analysis was performed using a nonrigid registration algorithm that was specifically designed for motion estimation from dynamic imaging data. The method registers the entire 4D image data sequence in a groupwise optimization fashion, thus avoiding a bias toward a specifically chosen reference time point. Three healthy volunteers were scanned over several breathing cycles (12 s) from three different positions and angles on the abdomen; a total of nine 4D scans for the three volunteers. Well-defined anatomic landmarks were manually annotated in all 96 time frames for assessment of the automatic algorithm. The error of the automatic motion estimation method was compared with interobserver variability. The authors also performed experiments to investigate the influence of parameters defining the deformation field flexibility and evaluated how well the method performed with a lower temporal resolution in order to establish the minimum frame rate required for accurate motion estimation. Results: The registration method estimated liver motion with an error of 1 mm (75% percentile over all datasets), which was lower than the interobserver variability of 1.4 mm. The results were only slightly dependent on the degrees of freedom of the deformation model. The registration error increased to 2.8 mm with an eight times lower temporal resolution. Conclusions: The authors conclude that the methodology was able to accurately track the motion of the liver in the 4D ultrasound data. The authors believe

  11. Hyperspectral Imaging for Cancer Surgical Margin Delineation: Registration of Hyperspectral and Histological Images.

    Science.gov (United States)

    Lu, Guolan; Halig, Luma; Wang, Dongsheng; Chen, Zhuo Georgia; Fei, Baowei

    2014-03-12

    The determination of tumor margins during surgical resection remains a challenging task. A complete removal of malignant tissue and conservation of healthy tissue is important for the preservation of organ function, patient satisfaction, and quality of life. Visual inspection and palpation is not sufficient for discriminating between malignant and normal tissue types. Hyperspectral imaging (HSI) technology has the potential to noninvasively delineate surgical tumor margin and can be used as an intra-operative visual aid tool. Since histological images provide the ground truth of cancer margins, it is necessary to warp the cancer regions in ex vivo histological images back to in vivo hyperspectral images in order to validate the tumor margins detected by HSI and to optimize the imaging parameters. In this paper, principal component analysis (PCA) is utilized to extract the principle component bands of the HSI images, which is then used to register HSI images with the corresponding histological image. Affine registration is chosen to model the global transformation. A B-spline free form deformation (FFD) method is used to model the local non-rigid deformation. Registration experiment was performed on animal hyperspectral and histological images. Experimental results from animals demonstrated the feasibility of the hyperspectral imaging method for cancer margin detection.

  12. Study on Android BroadcastReceiver Registration Method%Android中的BroadcastReceiver注册方式研究

    Institute of Scientific and Technical Information of China (English)

    鲁晓天; 李永全

    2015-01-01

    在Android整个系统中,Broadcast作为一种机制,在应用程序之间传输信息。而BroadcastReceiver就是对发送出来的Broadcast进行过滤接受并响应的一类组件,也叫作广播接收器,是Android的四大基本组件之一。不过目前对Broadcast-Receiver进行的介绍不是很多,通过对广播接收器的生命周期,广播类型,注册方式等方面进行介绍,并通过两个实例使读者对广播接收器的注册方式有进一步的了解,对两种注册方式有更直面的认识,明白动态注册和静态注册之间的差异和优缺点,对两种基本的注册方法的使用流程更加清晰。%In the Android Broadcast in the whole system, as a mechanism, the transmission of information between applications. A class of component and BroadcastReceiver is to send out the Broadcast filter to accept and response, also called a broadcast re⁃ceiver, is one of four basic components of Android. But at present on the BroadcastReceiver presentation is not very large, based on the life cycle of the broadcast receiver, broadcast type, registration mode are introduced, and the broadcast receiver register way to further the understanding of the reader through two examples, there are more direct understanding of two registration mode, understand the difference between the dynamic registration and static registration and the advantages and disadvantages, on two kinds of basic registration method using process more clear.

  13. Experimental examination of similarity measures and preprocessing methods used for image registration

    Science.gov (United States)

    Svedlow, M.; Mcgillem, C. D.; Anuta, P. E.

    1976-01-01

    The criterion used to measure the similarity between images and thus find the position where the images are registered is examined. The three similarity measures considered are the correlation coefficient, the sum of the absolute differences, and the correlation function. Three basic types of preprocessing are then discussed: taking the magnitude of the gradient of the images, thresholding the images at their medians, and thresholding the magnitude of the gradient of the images at an arbitrary level to be determined experimentally. These multitemporal registration techniques are applied to remote imagery of agricultural areas.

  14. Automatic image fusion of real-time ultrasound with computed tomography images: a prospective comparison between two auto-registration methods.

    Science.gov (United States)

    Cha, Dong Ik; Lee, Min Woo; Kim, Ah Yeong; Kang, Tae Wook; Oh, Young-Taek; Jeong, Ja-Yeon; Chang, Jung-Woo; Ryu, Jiwon; Lee, Kyong Joon; Kim, Jaeil; Bang, Won-Chul; Shin, Dong Kuk; Choi, Sung Jin; Koh, Dalkwon; Seo, Bong Koo; Kim, Kyunga

    2017-01-01

    Background A major drawback of conventional manual image fusion is that the process may be complex, especially for less-experienced operators. Recently, two automatic image fusion techniques called Positioning and Sweeping auto-registration have been developed. Purpose To compare the accuracy and required time for image fusion of real-time ultrasonography (US) and computed tomography (CT) images between Positioning and Sweeping auto-registration. Material and Methods Eighteen consecutive patients referred for planning US for radiofrequency ablation or biopsy for focal hepatic lesions were enrolled. Image fusion using both auto-registration methods was performed for each patient. Registration error, time required for image fusion, and number of point locks used were compared using the Wilcoxon signed rank test. Results Image fusion was successful in all patients. Positioning auto-registration was significantly faster than Sweeping auto-registration for both initial (median, 11 s [range, 3-16 s] vs. 32 s [range, 21-38 s]; P fusion. Registration error of Positioning auto-registration was significantly higher for initial image fusion (median, 38.8 mm [range, 16.0-84.6 mm] vs. 18.2 mm [6.7-73.4 mm]; P = 0.029), but not for complete image fusion (median, 4.75 mm [range, 1.7-9.9 mm] vs. 5.8 mm [range, 2.0-13.0 mm]; P = 0.338]. Number of point locks required to refine the initially fused images was significantly higher with Positioning auto-registration (median, 2 [range, 2-3] vs. 1 [range, 1-2]; P = 0.012]. Conclusion Positioning auto-registration offers faster image fusion between real-time US and pre-procedural CT images than Sweeping auto-registration. The final registration error is similar between the two methods.

  15. Articulated registration: elastic registration based on a wire-model

    Science.gov (United States)

    Martin-Fernandez, Miguel A.; Munyoz-Moreno, Emma; Martin-Fernandez, Marcos; Alberola-Lopez, Carlos

    2005-04-01

    In this paper we propose a new method of elastic registration of anatomical structures that bears an inner skeleton, such as the knee, hand or spine. Such a method has to deal with great degrees of variability, specially for the case of inter-subject registration; but even for the intra-subject case the degree of variability of images will be large since the structures we bear in mind are articulated. Rigid registration methods are clearly inappropriate for this problem, and well-known elastic methods do not usually incorporate the restriction of maintaining long skeletal structures straight. A new method is therefore needed to deal with such a situation; we call this new method "articulated registration". The inner bone skeleton is modeled with a wire model, where wires are drawn by connecting landmarks located in the main joints of the skeletal structure to be registered (long bones). The main feature of our registration method is that within the bone axis (specifically, where the wires are) an exact registration is guaranteed, while for the remaining image points an elastic registration is carried out based on a distance transform (with respect to the model wires); this causes the registration on long bones to be affine to all practical purposes, while the registration of soft tissue -- far from the bones -- is elastic. As a proof-of-concept of this method we describe the registration of hands on radiographs.

  16. 窗口自适应更新的柔性目标视频跟踪%Visual Tracking with Window Updating of Non-rigid Object

    Institute of Scientific and Technical Information of China (English)

    李翠君; 王成儒

    2012-01-01

    运动人体目标的跟踪一直是视频监控中研究的重点.本文主要侧重柔性目标变形的方面,以HSI颜色模型进行模板的学习,在当前帧中得到模板,并且统计每一帧图像的信息量,然后在一下帧中进行Kalman预测.将预测到的区域与模板比较判断之后再决定是否更新模板,减少了一定的计算量,为了约束窗口的变化,引入信息量的概念,信息量由HSI颜色空间的I的特征点计算得到.这样,一直更新模板和窗口直至准确有效地跟踪人体目标.实验表明,在人体发生较大形变的过程中,会持续的跟踪人体,不会发生跟踪丢失的问题.%The human tracking is the key in the video surveillance. This text focuses on non-rigid objects, learning based on the HSI color model template. Each pixel of the template is modeled using two components with H and S. Get template from the current frame, statistic the information of every frame, and predict in the next frame using Kalman filter. Decide whether to update the template after comparing the forecast region and the template, reducing the amount of calculation. And for restraining the tracking window, information which is calculated from the color I is introduced. After that, the template and the window will be updated. The experimental results show that the proposed method achieves continuously tracking, and resolve the problem with the object disappeared.

  17. SU-E-J-58: Comparison of Conformal Tracking Methods Using Initial, Adaptive and Preceding Image Frames for Image Registration

    Energy Technology Data Exchange (ETDEWEB)

    Teo, P; Guo, K; Alayoubi, N; Kehler, K; Pistorius, S [CancerCare Manitoba, Winnipeg, MB (Canada)

    2015-06-15

    Purpose: Accounting for tumor motion during radiation therapy is important to ensure that the tumor receives the prescribed dose. Increasing the field size to account for this motion exposes the surrounding healthy tissues to unnecessary radiation. In contrast to using motion-encompassing techniques to treat moving tumors, conformal radiation therapy (RT) uses a smaller field to track the tumor and adapts the beam aperture according to the motion detected. This work investigates and compares the performance of three markerless, EPID based, optical flow methods to track tumor motion with conformal RT. Methods: Three techniques were used to track the motions of a 3D printed lung tumor programmed to move according to the tumor of seven lung cancer patients. These techniques utilized a multi-resolution optical flow algorithm as the core computation for image registration. The first method (DIR) registers the incoming images with an initial reference frame, while the second method (RFSF) uses an adaptive reference frame and the third method (CU) uses preceding image frames for registration. The patient traces and errors were evaluated for the seven patients. Results: The average position errors for all patient traces were 0.12 ± 0.33 mm, −0.05 ± 0.04 mm and −0.28 ± 0.44 mm for CU, DIR and RFSF method respectively. The position errors distributed within 1 standard deviation are 0.74 mm, 0.37 mm and 0.96 mm respectively. The CU and RFSF algorithms are sensitive to the characteristics of the patient trace and produce a wider distribution of errors amongst patients. Although the mean error for the DIR method is negatively biased (−0.05 mm) for all patients, it has the narrowest distribution of position error, which can be corrected using an offset calibration. Conclusion: Three techniques of image registration and position update were studied. Using direct comparison with an initial frame yields the best performance. The authors would like to thank Dr.YeLin Suh for

  18. Higher Order Kernels and Locally Affine LDDMM Registration

    CERN Document Server

    Sommer, Stefan; Darkner, Sune; Pennec, Xavier

    2011-01-01

    To achieve sparse description that allows intuitive analysis, we aim to represent deformation with a basis containing interpretable elements, and we wish to use elements that have the description capacity to represent the deformation compactly. We accomplish this by introducing higher order kernels in the LDDMM registration framework. The kernels allow local description of affine transformations and subsequent compact description of non-translational movement and of the entire non-rigid deformation. This is obtained with a representation that contains directly interpretable information from both mathematical and modeling perspectives. We develop the mathematical construction behind the higher order kernels, we show the implications for sparse image registration and deformation description, and we provide examples of how the capacity of the kernels enables registration with a very low number of parameters. The capacity and interpretability of the kernels lead to natural modeling of articulated movement, and th...

  19. Validation of Shape Context Based Image Registration Method Using Digital Image Correlation Measurement on a Rat Stomach

    DEFF Research Database (Denmark)

    Liao, Donghua; Wang, P; Zhao, Jingbo

    2014-01-01

    Recently we developed analysis for 3D visceral organ deformation by combining the shape context (SC) method with a full-field strain (strain distribution on a whole 3D surface) analysis for calculating distension-induced rat stomach deformation. The surface deformation detected by the SC method...... needs to be further verified by using a feature tracking measurement. Hence, the aim of this study was to verify the SC method-based calculation by using digital image correlation (DIC) measurement on a rat stomach. The rat stomach exposed to distension pressures 0.0, 0.2, 0.4, and 0.6 kPa were studied...... using both 3D DIC system and SC-based image registration calculation. Three different surface sample counts between the reference and the target surfaces were usedto gauge the effect of the surface sample counts on the calculation. Each pair of the surface points between the DIC measured target surface...

  20. Two-dimensional Length Extraction of Ballistic Target from ISAR Images Using a New Scaling Method by Affine Registration

    Directory of Open Access Journals (Sweden)

    Jin Guanghu

    2014-09-01

    Full Text Available The length of ballistic target is one of the most important features for target recognition. It can be extracted from ISAR Images. Unlike from the optical image, the length extraction from ISAR image has two difficulties. The first one is that it is hard to get the actual position of scattering centres by the traditional target extraction method. The second one is that the ISAR image’s cross scale is not known because of the target’s complex rotation. Here we propose two methods to solve these problems. Firstly, we use clustering method to get scattering centers. Secondly we propose to get cross scale of the ISAR images by affine registration. Experiments verified that our approach is realisable and has good performance.Defence Science Journal, Vol. 64, No. 5, September 2014, pp.458-463, DOI:http://dx.doi.org/10.14429/dsj.64.5001

  1. A multiple-image-based method to evaluate the performance of deformable image registration in the pelvis

    Science.gov (United States)

    Saleh, Ziad; Thor, Maria; Apte, Aditya P.; Sharp, Gregory; Tang, Xiaoli; Veeraraghavan, Harini; Muren, Ludvig; Deasy, Joseph

    2016-08-01

    Deformable image registration (DIR) is essential for adaptive radiotherapy (RT) for tumor sites subject to motion, changes in tumor volume, as well as changes in patient normal anatomy due to weight loss. Several methods have been published to evaluate DIR-related uncertainties but they are not widely adopted. The aim of this study was, therefore, to evaluate intra-patient DIR for two highly deformable organs—the bladder and the rectum—in prostate cancer RT using a quantitative metric based on multiple image registration, the distance discordance metric (DDM). Voxel-by-voxel DIR uncertainties of the bladder and rectum were evaluated using DDM on weekly CT scans of 38 subjects previously treated with RT for prostate cancer (six scans/subject). The DDM was obtained from group-wise B-spline registration of each patient’s collection of repeat CT scans. For each structure, registration uncertainties were derived from DDM-related metrics. In addition, five other quantitative measures, including inverse consistency error (ICE), transitivity error (TE), Dice similarity (DSC) and volume ratios between corresponding structures from pre- and post- registered images were computed and compared with the DDM. The DDM varied across subjects and structures; DDMmean of the bladder ranged from 2 to 13 mm and from 1 to 11 mm for the rectum. There was a high correlation between DDMmean of the bladder and the rectum (Pearson’s correlation coefficient, R p  =  0.62). The correlation between DDMmean and the volume ratios post-DIR was stronger (R p  =  0.51 0.68) than the correlation with the TE (bladder: R p  =  0.46 rectum: R p  =  0.47), or the ICE (bladder: R p  =  0.34 rectum: R p  =  0.37). There was a negative correlation between DSC and DDMmean of both the bladder (R p  =  -0.23) and the rectum (R p  =  -0.63). The DDM uncertainty metric indicated considerable DIR variability across subjects and structures

  2. Image registration with uncertainty analysis

    Science.gov (United States)

    Simonson, Katherine M.

    2011-03-22

    In an image registration method, edges are detected in a first image and a second image. A percentage of edge pixels in a subset of the second image that are also edges in the first image shifted by a translation is calculated. A best registration point is calculated based on a maximum percentage of edges matched. In a predefined search region, all registration points other than the best registration point are identified that are not significantly worse than the best registration point according to a predetermined statistical criterion.

  3. The effect of rigid and non-rigid connections between implants and teeth on biological and technical complications: a systematic review and a meta-analysis.

    Science.gov (United States)

    Tsaousoglou, Phoebus; Michalakis, Konstantinos; Kang, Kiho; Weber, Hans-Peter; Sculean, Anton

    2017-07-01

    To assess survival, as well as technical and biological complication rates of partial fixed dental prostheses (FDPs) supported by implants and teeth. An electronic Medline search was conducted to identify articles, published in dental journals from January 1980 to August 2015, reporting on partial FDPs supported by implants and teeth. The search terms were categorized into four groups comprising the PICO question. Manual searches of published full-text articles and related reviews were also performed. The initial database search produced 3587 relevant titles. Three hundred and eighty-six articles were retrieved for abstract review, while 39 articles were selected for full-text review. A total of 10 studies were selected for inclusion. Overall survival rate for implants ranged between 90% and 100%, after follow-up periods with a mean range of 18-120 months. The survival of the abutment teeth was 94.1-100%, while the prostheses survival was 85-100% for the same time period. The most frequent complications were "periapical lesions" (11.53%). The most frequent technical complication was "porcelain occlusal fracture" (16.6%), followed by "screw loosening" (15%). According to the meta-analysis, no intrusion was noted on the rigid connection group, while five teeth (8.19%) were intruded in the non-rigid connection group [95% CI (0.013-0.151)]. The tooth-implant FDP seems to be a possible alternative to an implant-supported FDP. There is limited evidence that rigid connection between teeth and implants presents better results when compared with the non-rigid one. The major drawback of non-rigidly connected FDPs is tooth intrusion. © 2016 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

  4. Free-form image registration of human cochlear μCT data using skeleton similarity as anatomical prior

    DEFF Research Database (Denmark)

    Kjer, Hans Martin; Fagertun, Jens; Vera, Sergio

    2016-01-01

    Better understanding of the anatomical variability of the human cochlear is important for the design and function of Cochlear Implants. Proper non-rigid alignment of high-resolution cochlear μCT data is a challenge for the typical cubic B-spline registration model. In this paper we study one way...... of incorporating skeleton-based similarity as an anatomical registration prior. We extract a centerline skeleton of the cochlear spiral, and generate corresponding parametric pseudo-landmarks between samples. These correspondences are included in the cost function of a typical cubic B-spline registration model...

  5. A new method for real-time co-registration of 3D coronary angiography and intravascular ultrasound or optical coherence tomography

    Energy Technology Data Exchange (ETDEWEB)

    Carlier, Stéphane, E-mail: sgcarlier@hotmail.com [Department of Cardiology, Universitair Ziekenhuis - UZ Brussel, Brussels (Belgium); Department of Cardiology, Erasme University Hospital, Université Libre de Bruxelles (ULB), Brussels (Belgium); Didday, Rich [INDEC Medical Systems Inc., Santa Clara, CA (United States); Slots, Tristan [Pie Medical Imaging BV, Maastricht (Netherlands); Kayaert, Peter; Sonck, Jeroen [Department of Cardiology, Universitair Ziekenhuis - UZ Brussel, Brussels (Belgium); El-Mourad, Mike; Preumont, Nicolas [Department of Cardiology, Erasme University Hospital, Université Libre de Bruxelles (ULB), Brussels (Belgium); Schoors, Dany; Van Camp, Guy [Department of Cardiology, Universitair Ziekenhuis - UZ Brussel, Brussels (Belgium)

    2014-06-15

    We present a new clinically practical method for online co-registration of 3D quantitative coronary angiography (QCA) and intravascular ultrasound (IVUS) or optical coherence tomography (OCT). The workflow is based on two modified commercially available software packages. Reconstruction steps are explained and compared to previously available methods. The feasibility for different clinical scenarios is illustrated. The co-registration appears accurate, robust and induced a minimal delay on the normal cath lab activities. This new method is based on the 3D angiographic reconstruction of the catheter path and does not require operator’s identification of landmarks to establish the image synchronization.

  6. Surface registration algorithm by employing energy registration method and ICP algorithm%能量法与ICP算法相结合从粗到精的曲面配准技术

    Institute of Scientific and Technical Information of China (English)

    潘明存; 乔丽霞; 赵松潮

    2013-01-01

    In the registration of free-form surface which is represented by point cloud or triangular mesh, ICP algorithm is used widely, but in practical applications, the basic ICP algorithm has some defects. According to the inherent limitations of basic ICP matching algorithm, the registration algorithm based on two steps method was given. At first step, the energy registration method was employed to align the data in different coordinate system, and then ICP algorithm was employed to register the data precisely by using the result of energy as the initial value. The forming examples of the actual workpiece was used to verify that the property in global optimization of the registration algorithm based on two steps method is better than that of ICP algorithm.%在使用点云数据或三角网格数据表示的自由曲面的配准问题中,ICP算法使用相当广泛,但就实际应用来说,基本的ICP匹配算法存在一定的缺陷.针对基本ICP匹配算法存在的固有限制,本文采用先粗后精的匹配思路,即先用能量法进行数据间的粗略配准,以粗配准的结果做初始值,利用ICP算法进行数据间的精配准.并用实际工件的成形例子对配准算法进行验证,其全局优化性能优于ICP算法.

  7. A comparison of three Deformable Image Registration Algorithms in 4DCT using conventional contour based methods and voxel-by-voxel comparison methods.

    Directory of Open Access Journals (Sweden)

    Mirek eFatyga

    2015-02-01

    Full Text Available Background: Commonly used methods of assessing the accuracy of Deformable Image Registration (DIR rely on image segmentation or landmark selection. These methods are very labor intensive and thus limited to relatively small number of image pairs. The direct voxel-by-voxel comparison can be automated to examine fluctuations in DIR quality on a long series of image pairs.Methods: A voxel-by-voxel comparison of three DIR algorithms applied to lung patients is presented. Registrations are compared by comparing volume histograms formed both with individual DIR maps and with a voxel-by-voxel subtraction of the two maps. When two DIR maps agree one concludes that both maps are interchangeable in treatment planning applications, though one cannot conclude that either one agrees with the ground truth. If two DIR maps significantly disagree one concludes that at least one of the maps deviates from the ground truth. We use the method to compare three DIR algorithms applied to peak inhale-peak exhale registrations of 4DFBCT data obtained from thirteen patients. Results: All three algorithms appear to be nearly equivalent when compared using DICE similarity coefficients. A comparison based on Jacobian Volume Histograms shows that all three algorithms measure changes in total volume of the lungs with reasonable accuracy, but show large differences in the variance of Jacobian distribution on all contoured structures. Analysis of voxel-by-voxel subtraction of DIR maps shows that the three algorithms differ to a degree which is sufficient to create a potential for dosimetric discrepancy during dose accumulation.Conclusions: DIR algorithms can perform well in some clinical applications, while potentially fail in others. These algorithms are best treated as potentially useful approximations of tissue deformation that need to be separately validated for every intended clinical application.

  8. 一种新的扫描点云自动配准方法%A New Automatic Registration Method of Scanning Point Cloud

    Institute of Scientific and Technical Information of China (English)

    钱鹏鹏; 郑德华

    2013-01-01

      点云数据配准是三维激光数据处理的关键问题,结合曲率进行配准是点云配准非常有效的一种方式。为了提高配准的速度和精度,针对点云曲率和RANSAC算法的特点和应用,分析了两种方法之间的优缺点。研究了一种结合曲率的RANSAC点云配准算法,并利用改进的ICP算法对点云进行精确配准。结果表明:基于曲率的RANSAC算法能够显著提高初始配准的速度和精度,同时改进的ICP算法比原有ICP算法提高了二次配准的速度和精度。%The point cloud data registration is the key issue of 3-d laser data processing .The point cloud registration combined with curvature distribution is a very effective away .In order to improve the registration speed and precision ,in view of the characters and application of point cloud curvature and RANSAC algorithm ,the advantages and disadvantages of the two methods are analyzed here .Then ,a RANSAC point cloud registration algorithm combined with curvature is studied ,and the improved ICP algorithm is used for point cloud registration .The results show that :the RANSAC algo-rithm based on curvature can significantly improve the initial registration speed and precision ,at the same time ,the im-proved ICP algorithm can significanlly improve the secondary registration speed and precision compared with the original ICP algorithm .

  9. Handling topological changes during elastic registration : Application to augmented reality in laparoscopic surgery.

    Science.gov (United States)

    Paulus, Christoph J; Haouchine, Nazim; Kong, Seong-Ho; Soares, Renato Vianna; Cazier, David; Cotin, Stephane

    2017-03-01

    Locating the internal structures of an organ is a critical aspect of many surgical procedures. Minimally invasive surgery, associated with augmented reality techniques, offers the potential to visualize inner structures, allowing for improved analysis, depth perception or for supporting planning and decision systems. Most of the current methods dealing with rigid or non-rigid augmented reality make the assumption that the topology of the organ is not modified. As surgery relies essentially on cutting and dissection of anatomical structures, such methods are limited to the early stages of the surgery. We solve this shortcoming with the introduction of a method for physics-based elastic registration using a single view from a monocular camera. Singularities caused by topological changes are detected and propagated to the preoperative model. This significantly improves the coherence between the actual laparoscopic view and the model and provides added value in terms of navigation and decision-making, e.g., by overlaying the internal structures of an organ on the laparoscopic view. Our real-time augmentation method is assessed on several scenarios, using synthetic objects and real organs. In all cases, the impact of our approach is demonstrated, both qualitatively and quantitatively ( http://www.open-cas.org/?q=PaulusIJCARS16 ). The presented approach tackles the challenge of localizing internal structures throughout a complete surgical procedure, even after surgical cuts. This information is crucial for surgeons to improve the outcome for their surgical procedure and avoid complications.

  10. A registration-based segmentation method with application to adiposity analysis of mice microCT images

    Science.gov (United States)

    Bai, Bing; Joshi, Anand; Brandhorst, Sebastian; Longo, Valter D.; Conti, Peter S.; Leahy, Richard M.

    2014-04-01

    Obesity is a global health problem, particularly in the U.S. where one third of adults are obese. A reliable and accurate method of quantifying obesity is necessary. Visceral adipose tissue (VAT) and subcutaneous adipose tissue (SAT) are two measures of obesity that reflect different associated health risks, but accurate measurements in humans or rodent models are difficult. In this paper we present an automatic, registration-based segmentation method for mouse adiposity studies using microCT images. We co-register the subject CT image and a mouse CT atlas. Our method is based on surface matching of the microCT image and an atlas. Surface-based elastic volume warping is used to match the internal anatomy. We acquired a whole body scan of a C57BL6/J mouse injected with contrast agent using microCT and created a whole body mouse atlas by manually delineate the boundaries of the mouse and major organs. For method verification we scanned a C57BL6/J mouse from the base of the skull to the distal tibia. We registered the obtained mouse CT image to our atlas. Preliminary results show that we can warp the atlas image to match the posture and shape of the subject CT image, which has significant differences from the atlas. We plan to use this software tool in longitudinal obesity studies using mouse models.

  11. Development of Data Registration and Fusion Methods for Measurement of Ultra-Precision Freeform Surfaces

    National Research Council Canada - National Science Library

    Ling Bao Kong; Ming Jun Ren; Min Xu

    2017-01-01

    .... The accuracy of the overlapping area is further improved by developing a Gaussian process based data fusion method with full consideration of the associated uncertainties in the measured datasets. Experimental studies are undertaken to examine the effectiveness of the proposed method. The study should contribute to the high precision and efficient measurement of ultra-precision freeform surfaces on multi-sensor systems.

  12. Computed tomography calcium score scan for attenuation correction of N-13 ammonia cardiac positron emission tomography : effect of respiratory phase and registration method

    NARCIS (Netherlands)

    Zaidi, Habib; Nkoulou, Rene; Bond, Sarah; Baskin, Aylin; Schindler, Thomas; Ratib, Osman; Declerck, Jerome

    2013-01-01

    The use of coronary calcium scoring (CaScCT) for attenuation correction (AC) of N-13-ammonia PET/CT studies (NH3) is still being debated. We compare standard ACCT to CaScCT using various respiratory phases and co-registration methods for AC. Forty-one patients underwent a stress/rest NH3. Standard A

  13. High-performance GPU-based rendering for real-time, rigid 2D/3D-image registration and motion prediction in radiation oncology

    Science.gov (United States)

    Spoerk, Jakob; Gendrin, Christelle; Weber, Christoph; Figl, Michael; Pawiro, Supriyanto Ardjo; Furtado, Hugo; Fabri, Daniella; Bloch, Christoph; Bergmann, Helmar; Gröller, Eduard; Birkfellner, Wolfgang

    2012-01-01

    A common problem in image-guided radiation therapy (IGRT) of lung cancer as well as other malignant diseases is the compensation of periodic and aperiodic motion during dose delivery. Modern systems for image-guided radiation oncology allow for the acquisition of cone-beam computed tomography data in the treatment room as well as the acquisition of planar radiographs during the treatment. A mid-term research goal is the compensation of tumor target volume motion by 2D/3D registration. In 2D/3D registration, spatial information on organ location is derived by an iterative comparison of perspective volume renderings, so-called digitally rendered radiographs (DRR) from computed tomography volume data, and planar reference x-rays. Currently, this rendering process is very time consuming, and real-time registration, which should at least provide data on organ position in less than a second, has not come into existence. We present two GPU-based rendering algorithms which generate a DRR of 512 × 512 pixels size from a CT dataset of 53 MB size at a pace of almost 100 Hz. This rendering rate is feasible by applying a number of algorithmic simplifications which range from alternative volume-driven rendering approaches – namely so-called wobbled splatting – to sub-sampling of the DRR-image by means of specialized raycasting techniques. Furthermore, general purpose graphics processing unit (GPGPU) programming paradigms were consequently utilized. Rendering quality and performance as well as the influence on the quality and performance of the overall registration process were measured and analyzed in detail. The results show that both methods are competitive and pave the way for fast motion compensation by rigid and possibly even non-rigid 2D/3D registration and, beyond that, adaptive filtering of motion models in IGRT. PMID:21782399

  14. Registration of melting and crystallization process of MCMgLi8Ca5 alloy with use of ATND method

    Directory of Open Access Journals (Sweden)

    J. Pezda

    2009-04-01

    Full Text Available Among lightweight metal alloys, magnesium is the lightest structural material with density of 1.74 g/cm3, having many attractive physical and mechanical properties combined with processing advantages. Therefore, it represents very attractive material for large amountof applications starting from automotive industry as the main user, up to other industry fields like sports, robotic electronics, armaments, and textile ones, or production of audio-video equipment. Furthermore, addition of lithium, that has density of 0,53 g/cm3, reduces density of the resulting Mg-Li alloys to the same level as polymeric materials. On metallic matrix of magnesium alloys with lithium are also manufactured composites reinforced with e.g. ceramic fiber, which are used as a lightweight and resistant structure materials. Therefore, Mg-Li alloys become an alternative material assuring low density, improved ductility and corrosion resistance.The paper presents an attempt of implementation of the ATND method to monitoring of crystallization process of MCMgLi8Ca5 alloys.Investigated magnesium alloys were produced in the Foundry Research Institute. Registration of melting and crystallization processes wasmade with use of the ATND method. Results of the preliminary tests are shown in a graphical form.

  15. Registration of Crystallization Process of Ultra-Lightweight Mg-Li Alloys with Use of ATND Method

    Directory of Open Access Journals (Sweden)

    A. Białobrzeski

    2007-07-01

    Full Text Available Magnesium alloys are characterized by advantageous ratio of strength and/or elastic modulus to density, that is, can sustain static and dynamic loads similar to iron and aluminium, and additionally feature good vibration damping. Castings from magnesium alloys are lighter with about 20 – 30% than aluminium alloys and with 50 – 75% than iron alloys, that is why they are used in aviation and rocket industry and everywhere the weight of a product is of important significance for conditions of its operation. Also automotive industry introduces to vehicle’s structure an elements (castings manufactured from such alloys. On metallic matrix of magnesium alloys with lithium are also manufactured a composites reinforced with e.g. ceramic fiber, which are used as lightweight and resistant structure materials. The paper presents an attempt of implementation of ATND method (Thermal-Voltage-Derivative Analysis to monitoring of crystallization process of ultra-lightweight Mg-Li alloys. Investigated magnesium alloys with contents of about 2,3% Li, 10% Li and 11 % Li were produced in the Foundry Research Institute. Registration of melting and crystallization processes was made with use of the ATND method. Results of preliminary tests are shown in graphical form.

  16. Fast Interframe Registration Method in Aerial Videos%航拍视频帧间快速配准算法

    Institute of Scientific and Technical Information of China (English)

    申浩; 李书晓; 申意萍; 朱承飞; 常红星

    2013-01-01

    To deal with the effect which is caused by camera moving,a fast and reliable image registration method between sequential frames for unmanned aerial vehicle (UAV) videos is proposed.Firstly,the stable FAST corners are selected via the constraints of spatial displacements and cornerness measurements.Meanwhile,an adaptive threshold method is involved in the feature detection process to improve environmental adaptability.Then,the binary descriptions of the detected features are generated by using the uncorrelated sample point set,which is obtained by training,and the matched points are established using the NN (Nearest Neighbor) algorithm based on hamming distances.Finally,the affine transformation parameters between adjacent frames are estimated using the matched points by RANSAC,which can be provided for further processing,such as moving object detection and tracking.Experimental results show that the proposed algorithm is fast and reliable,it has high environmental adaptability,and thus can meet the image registration requirements in UAV systems.%为应对相机运动的影响,提出了一种快速有效的无人机(UAV)视频相邻帧图像配准算法.通过空间分布约束和角点量限制来筛选有效的FAST特征点,引入自适应阈值提高特征点检测的环境适应性,采用训练得到的不相关采样点集对特征点进行二值描述,以获得准确快速的特征描述,并通过最近邻算法根据汉明距离获得特征匹配对,最后运用RANSAC方法得到帧间仿射变换模型参数,消除相机运动带来的影响,为后续运动目标检测与跟踪提供保障.实验结果表明该算法快速、稳定,具有较高的环境适应性,能够满足无人机系统视频图像配准的要求.

  17. Radiographic aluminum equivalent value of bone : the development of a registration method and some clinical applications

    NARCIS (Netherlands)

    W.T. Trouerbach (Willem)

    1982-01-01

    textabstractThe aim of this thesis is to establish and develop a method suitable for obtaining an objective analysis of bone as registered on a radiographic image. This analysis concerns determination of the quantity of bone mineral present. The system has been tested in-vitro and in a clinical stud

  18. Dose comparison using deformed image registration method on breast cancer radiotherapy

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Jong Won; Kim, Jung Hoon [Dept. of Radiation Oncology, KonYang University Hospital, Daejeon (Korea, Republic of); Won, Young Jin [Dept. of Radiation Oncology, InJe University Ilsan Paik Hospital, Goyang (Korea, Republic of)

    2017-03-15

    The purpose of this study is to reconstruct the treatment plan by applying CBCT and DIR to dose changes according to the change of the patient's motion and breast shape in the large breast cancer patients and to compare the doses using TWF, FIF and IMRT. CT and CBCT were performed with MIM6 to create DIRCT and each treatment plan was made. The patient underwent computed tomography simulation in both prone and supine position. The homogeneity index (HI), conformity index (CI), coverage index (CVI) to the left breast as planning target volume (PTV) were determined and the doses to the lung, heart, and right breast as organ at risk (OAR) were compared by using dose-volume histogram and the unique property of each organ. The value of HI of the PTV breast increased in all treatment planning methods using DIRCT, and CVI and CI were decreased in the treatment planning methods using DIRCT.

  19. Registration and Measurement of Right and Left Mediotrusion by using the Method of Electronic Axiography

    OpenAIRE

    Kraljević, S.; Pandurić, J.; Badel, T; Dulčić, N.

    2002-01-01

    PURPOSE. The aim of this study was to register and measure lower jaw movements and to analyse the measured length of maximal right and left mediotrusion movement in asymptomatic and symptomatic subjects. MATERIALS AND METHODS. A symptomatic group consisted of 51 subjects with temporomandibular disorders. A control group consisted of 43 subjects without signs and symptoms of temporomandibular joint disorders. In the symptomatic group of subjects signs and symptoms of temporomandibular disor...

  20. SU-C-17A-03: Evaluation of Deformable Image Registration Methods Between MRI and CT for Prostate Cancer Radiotherapy

    Energy Technology Data Exchange (ETDEWEB)

    Wen, N; Glide-Hurst, C; Zhong, H; Chin, K; Kumarasiri, A; Liu, C; Liu, M; Siddiqui, S [I Chetty, Henry Ford Health System, Detroit, MI (United States)

    2014-06-15

    Purpose: We evaluated the performance of two commercially available and one open source B-Spline deformable image registration (DIR) algorithms between T2-weighted MRI and treatment planning CT using the DICE indices. Methods: CT simulation (CT-SIM) and MR simulation (MR-SIM) for four prostate cancer patients were conducted on the same day using the same setup and immobilization devices. CT images (120 kVp, 500 mAs, voxel size = 1.1x1.1x3.0 mm3) were acquired using an open-bore CT scanner. T2-weighted Turbo Spine Echo (T2W-TSE) images (TE/TR/α = 80/4560 ms/90°, voxel size = 0.7×0.7×2.5 mm3) were scanned on a 1.0T high field open MR-SIM. Prostates, seminal vesicles, rectum and bladders were delineated on both T2W-TSE and CT images by the attending physician. T2W-TSE images were registered to CT images using three DIR algorithms, SmartAdapt (Varian), Velocity AI (Velocity) and Elastix (Klein et al 2010) and contours were propagated. DIR results were evaluated quantitatively or qualitatively by image comparison and calculating organ DICE indices. Results: Significant differences in the contours of prostate and seminal vesicles were observed between MR and CT. On average, volume changes of the propagated contours were 5%, 2%, 160% and 8% for the prostate, seminal vesicles, bladder and rectum respectively. Corresponding mean DICE indices were 0.7, 0.5, 0.8, and 0.7. The intraclass correlation coefficient (ICC) was 0.9 among three algorithms for the Dice indices. Conclusion: Three DIR algorithms for CT/MR registration yielded similar results for organ propagation. Due to the different soft tissue contrasts between MRI and CT, organ delineation of prostate and SVs varied significantly, thus efforts to develop other DIR evaluation metrics are warranted. Conflict of interest: Submitting institution has research agreements with Varian Medical System and Philips Healthcare.

  1. Registration and measurement of opening and closing jaw movements and rotational mandibular capacity by using the method of electronic axiography.

    Science.gov (United States)

    Kraljević, Sonja; Pandurić, Josip; Badel, Tomislav; Dulcić, Niksa

    2003-01-01

    The aim of this study was to register and measure lower jaw movements, to analyse the measured length of opening and closing movements and to analyse the rotational mandibular capacity during the maximal opening of the mouth in the position of centric relation. Our objective was to determine the average values for each mandible and temporomandibular joint movement, as well as to determine the accuracy of electronic axiography, while diagnosing temporomandibular joint disorders. A statistical analysis was performed in order to evaluate whether significant differences between the length of the measured movements in asymptomatic and symptomatic subjects could be found. A symptomatic group consisted of 51 subjects with temporomandibular disorders. A control group consisted of 43 subjects without signs and symptoms of temporomandibular joint disorders. Each subject was registered by the GAMMA CADIAX system for registration of position and movement of the lower jaw, which consists of a conventional SAM axiograph, an electronic device for drawing curves by means of a computer. No significant differences were found between the groups of subjects for the measured variables. The results of the length of the mandibular and condyle movements, along with the rotational capacity of the mandible are important, in spite of unreliable indicators of temporomandibular joint function. Description analysis of a graphic recording of mandibular and TMJ movement remains an accurate evaluation method for the determination of TMJ dysfunction.

  2. Method for nanoscale spatial registration of scanning probes with substrates and surfaces

    Science.gov (United States)

    Wade, Lawrence A. (Inventor)

    2010-01-01

    Embodiments in accordance with the present invention relate to methods and apparatuses for aligning a scanning probe used to pattern a substrate, by comparing the position of the probe to a reference location or spot on the substrate. A first light beam is focused on a surface of the substrate as a spatial reference point. A second light beam then illuminates the scanning probe being used for patterning. An optical microscope images both the focused light beam, and a diffraction pattern, shadow, or light backscattered by the illuminated scanning probe tip of a scanning probe microscope (SPM), which is typically the tip of the scanning probe on an atomic force microscope (AFM). Alignment of the scanning probe tip relative to the mark is then determined by visual observation of the microscope image. This alignment process may be repeated to allow for modification or changing of the scanning probe microscope tip.

  3. A Comparative Evaluation of 3 Different Free-Form Deformable Image Registration and Contour Propagation Methods for Head and Neck MRI: The Case of Parotid Changes During Radiotherapy.

    Science.gov (United States)

    Broggi, Sara; Scalco, Elisa; Belli, Maria Luisa; Logghe, Gerlinde; Verellen, Dirk; Moriconi, Stefano; Chiara, Anna; Palmisano, Anna; Mellone, Renata; Fiorino, Claudio; Rizzo, Giovanna

    2017-06-01

    To validate and compare the deformable image registration and parotid contour propagation process for head and neck magnetic resonance imaging in patients treated with radiotherapy using 3 different approaches-the commercial MIM, the open-source Elastix software, and an optimized version of it. Twelve patients with head and neck cancer previously treated with radiotherapy were considered. Deformable image registration and parotid contour propagation were evaluated by considering the magnetic resonance images acquired before and after the end of the treatment. Deformable image registration, based on free-form deformation method, and contour propagation available on MIM were compared to Elastix. Two different contour propagation approaches were implemented for Elastix software, a conventional one (DIR_Trx) and an optimized homemade version, based on mesh deformation (DIR_Mesh). The accuracy of these 3 approaches was estimated by comparing propagated to manual contours in terms of average symmetric distance, maximum symmetric distance, Dice similarity coefficient, sensitivity, and inclusiveness. A good agreement was generally found between the manual contours and the propagated ones, without differences among the 3 methods; in few critical cases with complex deformations, DIR_Mesh proved to be more accurate, having the lowest values of average symmetric distance and maximum symmetric distance and the highest value of Dice similarity coefficient, although nonsignificant. The average propagation errors with respect to the reference contours are lower than the voxel diagonal (2 mm), and Dice similarity coefficient is around 0.8 for all 3 methods. The 3 free-form deformation approaches were not significantly different in terms of deformable image registration accuracy and can be safely adopted for the registration and parotid contour propagation during radiotherapy on magnetic resonance imaging. More optimized approaches (as DIR_Mesh) could be preferable for critical

  4. Alginate moulding: an empirical method for magnetic resonance imaging/positron emission tomography co-registration in a tumor rat model

    Energy Technology Data Exchange (ETDEWEB)

    Rommel, Denis [Department of Radiology and Medical Imaging, Universite Catholique de Louvain, Brussels (Belgium)], E-mail: denis.rommel@uclouvain.be; Abarca-Quinones, Jorge [Department of Radiology and Medical Imaging, Universite Catholique de Louvain, Brussels (Belgium); Christian, Nicolas [Center for Molecular Imaging and Experimental Radiotherapy, Universite Catholique de Louvain, Brussels (Belgium); Peeters, Frank [Department of Radiology and Medical Imaging, Universite Catholique de Louvain, Brussels (Belgium); Lonneux, Max; Labar, Daniel; Bol, Anne; Gregoire, Vincent [Center for Molecular Imaging and Experimental Radiotherapy, Universite Catholique de Louvain, Brussels (Belgium); Duprez, Thierry [Department of Radiology and Medical Imaging, Universite Catholique de Louvain, Brussels (Belgium)

    2008-07-15

    Background and Purpose: In the experimental field of animal models, co-registration between positron emission tomography (PET) and magnetic resonance imaging (MRI) data still relies on non-automated post-processing using sophisticated algorithms and software developments. We assessed the value of an empirical method using alginate moulding for PET-MR co-registration in a tumor rat model. Methods: Male WAG/RijHsd rats bearing grafted syngenic rhabdomyosarcoma were examined under general anesthesia by MRI using a clinical whole-body 3-T system equipped with a sensitivity-encoding four-channel wrist coil and by a small animal PET system using labelled [{sup 18}F]-fluorocholine as tracer. An alginate mould including a system of external fiducials was manufactured for each animal, allowing strict immobilization and similar positioning for both modalities. Fourteen rats (27 tumors) had only one MR/PET imaging session. Five rats (9 tumors) had a similar MR/PET session before and 3 days after external radiation therapy (13 Gy in one fraction) using the same mould. Co-registration was performed using the Pmod release 2.75 software (PMOD Technologies, Ltd., Adliswil, Switzerland) with mutual information algorithm. Results: The manufacture of the alginate moulds was easy and innocuous. Imaging sessions were well tolerated. PET-MR co-registration based on mutual information was perfect at visual examination, which was confirmed by the superimposition of external fiducials on fused images. Reuse of the same mould for the post-therapeutic session was feasible 3 days after the pre-therapeutic one in spite of tumor growth. Conclusion: The empirical method using alginate moulding with external fiducials for PET-MR co-registration in a rodent tumor model was feasible and accurate.

  5. Free Form Deformation-Based Image Registration Improves Accuracy of Traction Force Microscopy.

    Directory of Open Access Journals (Sweden)

    Alvaro Jorge-Peñas

    Full Text Available Traction Force Microscopy (TFM is a widespread method used to recover cellular tractions from the deformation that they cause in their surrounding substrate. Particle Image Velocimetry (PIV is commonly used to quantify the substrate's deformations, due to its simplicity and efficiency. However, PIV relies on a block-matching scheme that easily underestimates the deformations. This is especially relevant in the case of large, locally non-uniform deformations as those usually found in the vicinity of a cell's adhesions to the substrate. To overcome these limitations, we formulate the calculation of the deformation of the substrate in TFM as a non-rigid image registration process that warps the image of the unstressed material to match the image of the stressed one. In particular, we propose to use a B-spline -based Free Form Deformation (FFD algorithm that uses a connected deformable mesh to model a wide range of flexible deformations caused by cellular tractions. Our FFD approach is validated in 3D fields using synthetic (simulated data as well as with experimental data obtained using isolated endothelial cells lying on a deformable, polyacrylamide substrate. Our results show that FFD outperforms PIV providing a deformation field that allows a better recovery of the magnitude and orientation of tractions. Together, these results demonstrate the added value of the FFD algorithm for improving the accuracy of traction recovery.

  6. Free Form Deformation–Based Image Registration Improves Accuracy of Traction Force Microscopy

    Science.gov (United States)

    Jorge-Peñas, Alvaro; Izquierdo-Alvarez, Alicia; Aguilar-Cuenca, Rocio; Vicente-Manzanares, Miguel; Garcia-Aznar, José Manuel; Van Oosterwyck, Hans; de-Juan-Pardo, Elena M.; Ortiz-de-Solorzano, Carlos; Muñoz-Barrutia, Arrate

    2015-01-01

    Traction Force Microscopy (TFM) is a widespread method used to recover cellular tractions from the deformation that they cause in their surrounding substrate. Particle Image Velocimetry (PIV) is commonly used to quantify the substrate’s deformations, due to its simplicity and efficiency. However, PIV relies on a block-matching scheme that easily underestimates the deformations. This is especially relevant in the case of large, locally non-uniform deformations as those usually found in the vicinity of a cell’s adhesions to the substrate. To overcome these limitations, we formulate the calculation of the deformation of the substrate in TFM as a non-rigid image registration process that warps the image of the unstressed material to match the image of the stressed one. In particular, we propose to use a B-spline -based Free Form Deformation (FFD) algorithm that uses a connected deformable mesh to model a wide range of flexible deformations caused by cellular tractions. Our FFD approach is validated in 3D fields using synthetic (simulated) data as well as with experimental data obtained using isolated endothelial cells lying on a deformable, polyacrylamide substrate. Our results show that FFD outperforms PIV providing a deformation field that allows a better recovery of the magnitude and orientation of tractions. Together, these results demonstrate the added value of the FFD algorithm for improving the accuracy of traction recovery. PMID:26641883

  7. Automated segmentation and tracking of non-rigid objects in time-lapse microscopy videos of polymorphonuclear neutrophils.

    Science.gov (United States)

    Brandes, Susanne; Mokhtari, Zeinab; Essig, Fabian; Hünniger, Kerstin; Kurzai, Oliver; Figge, Marc Thilo

    2015-02-01

    Time-lapse microscopy is an important technique to study the dynamics of various biological processes. The labor-intensive manual analysis of microscopy videos is increasingly replaced by automated segmentation and tracking methods. These methods are often limited to certain cell morphologies and/or cell stainings. In this paper, we present an automated segmentation and tracking framework that does not have these restrictions. In particular, our framework handles highly variable cell shapes and does not rely on any cell stainings. Our segmentation approach is based on a combination of spatial and temporal image variations to detect moving cells in microscopy videos. This method yields a sensitivity of 99% and a precision of 95% in object detection. The tracking of cells consists of different steps, starting from single-cell tracking based on a nearest-neighbor-approach, detection of cell-cell interactions and splitting of cell clusters, and finally combining tracklets using methods from graph theory. The segmentation and tracking framework was applied to synthetic as well as experimental datasets with varying cell densities implying different numbers of cell-cell interactions. We established a validation framework to measure the performance of our tracking technique. The cell tracking accuracy was found to be >99% for all datasets indicating a high accuracy for connecting the detected cells between different time points.

  8. Modeling of Radial Flow on a Non-Contact End Effector for Robotic Handling of Non-Rigid Material

    Directory of Open Access Journals (Sweden)

    E. Toklu

    2012-08-01

    Full Text Available In this study a numerical model on radial flow and pressure distribution showing regions of negative values which tendto levitate products is developed. The end effector operates on the principle of generating a high-speed fluid flowbetween the end effector and product surface thereby creating a vacuum which levitates the product. The Navier-Stokes equations and the equation of continuity describing the flow between the nozzle and material are numericallysolved by finite volume discretization method. The lifting forces and conditions are discussed by comparing numericalresults with experimental findings.

  9. STUDY OF THE CONSTRUCTION OF NON-RIGID ROAD PAVEMENT IN MOUNTAIN AREAS OF THE DAGESTAN REPUBLIC

    Directory of Open Access Journals (Sweden)

    T. G. Gasanov

    2014-01-01

    Full Text Available Currently, an important national goal is to increase road construction with simultaneous improving of the quality, reliability and durability and reducing consumption of scarce materials. In this regard, at the forefront are the problems of scientifically grounded complex calculation methods of building structures for strength and durability, allowing on the basis of a full consideration of the actual condition of the material to make the optimal design of the road pavement.

  10. Solid Mesh Registration for Radiotherapy Treatment Planning

    DEFF Research Database (Denmark)

    Noe, Karsten Østergaard; Sørensen, Thomas Sangild

    2010-01-01

    We present an algorithm for solid organ registration of pre-segmented data represented as tetrahedral meshes. Registration of the organ surface is driven by force terms based on a distance field representation of the source and reference shapes. Registration of internal morphology is achieved usi...... to complete. The proposed method has many potential uses in image guided radiotherapy (IGRT) which relies on registration to account for organ deformation between treatment sessions....

  11. Prostate CT segmentation method based on nonrigid registration in ultrasound-guided CT-based HDR prostate brachytherapy

    Energy Technology Data Exchange (ETDEWEB)

    Yang, Xiaofeng, E-mail: xyang43@emory.edu; Rossi, Peter; Ogunleye, Tomi; Marcus, David M.; Jani, Ashesh B.; Curran, Walter J.; Liu, Tian [Department of Radiation Oncology and Winship Cancer Institute, Emory University, Atlanta, Georgia 30322 (United States); Mao, Hui [Department of Radiology and Imaging Sciences, Emory University, Atlanta, Georgia 30322 (United States)

    2014-11-01

    Purpose: The technological advances in real-time ultrasound image guidance for high-dose-rate (HDR) prostate brachytherapy have placed this treatment modality at the forefront of innovation in cancer radiotherapy. Prostate HDR treatment often involves placing the HDR catheters (needles) into the prostate gland under the transrectal ultrasound (TRUS) guidance, then generating a radiation treatment plan based on CT prostate images, and subsequently delivering high dose of radiation through these catheters. The main challenge for this HDR procedure is to accurately segment the prostate volume in the CT images for the radiation treatment planning. In this study, the authors propose a novel approach that integrates the prostate volume from 3D TRUS images into the treatment planning CT images to provide an accurate prostate delineation for prostate HDR treatment. Methods: The authors’ approach requires acquisition of 3D TRUS prostate images in the operating room right after the HDR catheters are inserted, which takes 1–3 min. These TRUS images are used to create prostate contours. The HDR catheters are reconstructed from the intraoperative TRUS and postoperative CT images, and subsequently used as landmarks for the TRUS–CT image fusion. After TRUS–CT fusion, the TRUS-based prostate volume is deformed to the CT images for treatment planning. This method was first validated with a prostate-phantom study. In addition, a pilot study of ten patients undergoing HDR prostate brachytherapy was conducted to test its clinical feasibility. The accuracy of their approach was assessed through the locations of three implanted fiducial (gold) markers, as well as T2-weighted MR prostate images of patients. Results: For the phantom study, the target registration error (TRE) of gold-markers was 0.41 ± 0.11 mm. For the ten patients, the TRE of gold markers was 1.18 ± 0.26 mm; the prostate volume difference between the authors’ approach and the MRI-based volume was 7.28% ± 0

  12. Prostate CT segmentation method based on nonrigid registration in ultrasound-guided CT-based HDR prostate brachytherapy

    Science.gov (United States)

    Yang, Xiaofeng; Rossi, Peter; Ogunleye, Tomi; Marcus, David M.; Jani, Ashesh B.; Mao, Hui; Curran, Walter J.; Liu, Tian

    2014-01-01

    Purpose: The technological advances in real-time ultrasound image guidance for high-dose-rate (HDR) prostate brachytherapy have placed this treatment modality at the forefront of innovation in cancer radiotherapy. Prostate HDR treatment often involves placing the HDR catheters (needles) into the prostate gland under the transrectal ultrasound (TRUS) guidance, then generating a radiation treatment plan based on CT prostate images, and subsequently delivering high dose of radiation through these catheters. The main challenge for this HDR procedure is to accurately segment the prostate volume in the CT images for the radiation treatment planning. In this study, the authors propose a novel approach that integrates the prostate volume from 3D TRUS images into the treatment planning CT images to provide an accurate prostate delineation for prostate HDR treatment. Methods: The authors’ approach requires acquisition of 3D TRUS prostate images in the operating room right after the HDR catheters are inserted, which takes 1–3 min. These TRUS images are used to create prostate contours. The HDR catheters are reconstructed from the intraoperative TRUS and postoperative CT images, and subsequently used as landmarks for the TRUS–CT image fusion. After TRUS–CT fusion, the TRUS-based prostate volume is deformed to the CT images for treatment planning. This method was first validated with a prostate-phantom study. In addition, a pilot study of ten patients undergoing HDR prostate brachytherapy was conducted to test its clinical feasibility. The accuracy of their approach was assessed through the locations of three implanted fiducial (gold) markers, as well as T2-weighted MR prostate images of patients. Results: For the phantom study, the target registration error (TRE) of gold-markers was 0.41 ± 0.11 mm. For the ten patients, the TRE of gold markers was 1.18 ± 0.26 mm; the prostate volume difference between the authors’ approach and the MRI-based volume was 7.28% ± 0

  13. Earth Science Imagery Registration

    Science.gov (United States)

    LeMoigne, Jacqueline; Morisette, Jeffrey; Cole-Rhodes, Arlene; Johnson, Kisha; Netanyahu, Nathan S.; Eastman, Roger; Stone, Harold; Zavorin, Ilya

    2003-01-01

    The study of global environmental changes involves the comparison, fusion, and integration of multiple types of remotely-sensed data at various temporal, radiometric, and spatial resolutions. Results of this integration may be utilized for global change analysis, as well as for the validation of new instruments or for new data analysis. Furthermore, future multiple satellite missions will include many different sensors carried on separate platforms, and the amount of remote sensing data to be combined is increasing tremendously. For all of these applications, the first required step is fast and automatic image registration, and as this need for automating registration techniques is being recognized, it becomes necessary to survey all the registration methods which may be applicable to Earth and space science problems and to evaluate their performances on a large variety of existing remote sensing data as well as on simulated data of soon-to-be-flown instruments. In this paper we present one of the first steps toward such an exhaustive quantitative evaluation. First, the different components of image registration algorithms are reviewed, and different choices for each of these components are described. Then, the results of the evaluation of the corresponding algorithms combining these components are presented o n several datasets. The algorithms are based on gray levels or wavelet features and compute rigid transformations (including scale, rotation, and shifts). Test datasets include synthetic data as well as data acquired over several EOS Land Validation Core Sites with the IKONOS and the Landsat-7 sensors.

  14. Kernel Bundle Diffeomorphic Image Registration Using Stationary Velocity Fields and Wendland Basis Functions.

    Science.gov (United States)

    Pai, Akshay; Sommer, Stefan; Sorensen, Lauge; Darkner, Sune; Sporring, Jon; Nielsen, Mads

    2016-06-01

    In this paper, we propose a multi-scale, multi-kernel shape, compactly supported kernel bundle framework for stationary velocity field-based image registration (Wendland kernel bundle stationary velocity field, wKB-SVF). We exploit the possibility of directly choosing kernels to construct a reproducing kernel Hilbert space (RKHS) instead of imposing it from a differential operator. The proposed framework allows us to minimize computational cost without sacrificing the theoretical foundations of SVF-based diffeomorphic registration. In order to recover deformations occurring at different scales, we use compactly supported Wendland kernels at multiple scales and orders to parameterize the velocity fields, and the framework allows simultaneous optimization over all scales. The performance of wKB-SVF is extensively compared to the 14 non-rigid registration algorithms presented in a recent comparison paper. On both MGH10 and CUMC12 datasets, the accuracy of wKB-SVF is improved when compared to other registration algorithms. In a disease-specific application for intra-subject registration, atrophy scores estimated using the proposed registration scheme separates the diagnostic groups of Alzheimer's and normal controls better than the state-of-the-art segmentation technique. Experimental results show that wKB-SVF is a robust, flexible registration framework that allows theoretically well-founded and computationally efficient multi-scale representation of deformations and is equally well-suited for both inter- and intra-subject image registration.

  15. The relative weight of shape and non-rigid motion cues in object perception: a model of the parameters underlying dynamic object discrimination.

    Science.gov (United States)

    Vuong, Quoc C; Friedman, Alinda; Read, Jenny C A

    2012-03-16

    Shape and motion are two dominant cues for object recognition, but it can be difficult to investigate their relative quantitative contribution to the recognition process. In the present study, we combined shape and non-rigid motion morphing to investigate the relative contributions of both types of cues to the discrimination of dynamic objects. In Experiment 1, we validated a novel parameter-based motion morphing technique using a single-part three-dimensional object. We then combined shape morphing with the novel motion morphing technique to pairs of multipart objects to create a joint shape and motion similarity space. In Experiment 2, participants were shown pairs of morphed objects from this space and responded "same" on the basis of motion-only, shape-only, or both cues. Both cue types influenced judgments: When responding to only one cue, the other cue could be ignored, although shape cues were more difficult to ignore. When responding on the basis of both cues, there was an overall bias to weight shape cues more than motion cues. Overall, our results suggest that shape influences discrimination more than motion even when both cue types have been made quantitatively equivalent in terms of their individual discriminability.

  16. Multi-stage 3D-2D registration for correction of anatomical deformation in image-guided spine surgery

    Science.gov (United States)

    Ketcha, M. D.; De Silva, T.; Uneri, A.; Jacobson, M. W.; Goerres, J.; Kleinszig, G.; Vogt, S.; Wolinsky, J.-P.; Siewerdsen, J. H.

    2017-06-01

    A multi-stage image-based 3D-2D registration method is presented that maps annotations in a 3D image (e.g. point labels annotating individual vertebrae in preoperative CT) to an intraoperative radiograph in which the patient has undergone non-rigid anatomical deformation due to changes in patient positioning or due to the intervention itself. The proposed method (termed msLevelCheck) extends a previous rigid registration solution (LevelCheck) to provide an accurate mapping of vertebral labels in the presence of spinal deformation. The method employs a multi-stage series of rigid 3D-2D registrations performed on sets of automatically determined and increasingly localized sub-images, with the final stage achieving a rigid mapping for each label to yield a locally rigid yet globally deformable solution. The method was evaluated first in a phantom study in which a CT image of the spine was acquired followed by a series of 7 mobile radiographs with increasing degree of deformation applied. Second, the method was validated using a clinical data set of patients exhibiting strong spinal deformation during thoracolumbar spine surgery. Registration accuracy was assessed using projection distance error (PDE) and failure rate (PDE  >  20 mm—i.e. label registered outside vertebra). The msLevelCheck method was able to register all vertebrae accurately for all cases of deformation in the phantom study, improving the maximum PDE of the rigid method from 22.4 mm to 3.9 mm. The clinical study demonstrated the feasibility of the approach in real patient data by accurately registering all vertebral labels in each case, eliminating all instances of failure encountered in the conventional rigid method. The multi-stage approach demonstrated accurate mapping of vertebral labels in the presence of strong spinal deformation. The msLevelCheck method maintains other advantageous aspects of the original LevelCheck method (e.g. compatibility with standard clinical workflow, large

  17. Virtual bite registration using intraoral digital scanning, CT and CBCT: In vitro evaluation of a new method and its implication for orthognathic surgery.

    Science.gov (United States)

    Nilsson, Johanna; Richards, Robert Geoff; Thor, Andreas; Kamer, Lukas

    2016-09-01

    Three-dimensional (3D) computer-assisted planning requires detailed visualisation of the craniomaxillofacial region and interocclusal relationship. The aim of this study was to establish and evaluate a method to create a 3D model of the craniomaxillofacial region and to adopt intraoral digital scanning to place the lower jaw into a centric relation (CR) without the need of additional plaster casts and model surgery. A standard plastic skull modified by metallic dental wires and brackets was subjected to computed tomography (CT), cone beam computed tomography (CBCT), and intraoral digital scanning. We evaluated two different virtual bite registrations, a digital scan of the buccal dental surfaces and scanning of the wax bites to position the lower jaw into a CR, and assessed the accuracy of the integration of intraoral scanning to the CT/CBCT scans. The mean registration error of corresponding mesh points for the CT and intraoral scanned images was 0.15 ± 0.12 mm, while this error was 0.18 ± 0.13 mm for the CBCT and intraoral scanned images. The mean accuracy of the two virtual bite registrations ranged from 0.41 to 0.49 mm (buccal scan technique) and from 0.65 to 1.3 mm (virtualised wax bite technique). A method for virtual bite registration was developed. It has the potential to eliminate plaster casts and model surgery and may facilitate 3D computer-assisted planning of orthognathic surgery cases.

  18. Deformable registration of multi-modal data including rigid structures

    Energy Technology Data Exchange (ETDEWEB)

    Huesman, Ronald H.; Klein, Gregory J.; Kimdon, Joey A.; Kuo, Chaincy; Majumdar, Sharmila

    2003-05-02

    Multi-modality imaging studies are becoming more widely utilized in the analysis of medical data. Anatomical data from CT and MRI are useful for analyzing or further processing functional data from techniques such as PET and SPECT. When data are not acquired simultaneously, even when these data are acquired on a dual-imaging device using the same bed, motion can occur that requires registration between the reconstructed image volumes. As the human torso can allow non-rigid motion, this type of motion should be estimated and corrected. We report a deformation registration technique that utilizes rigid registration for bony structures, while allowing elastic transformation of soft tissue to more accurately register the entire image volume. The technique is applied to the registration of CT and MR images of the lumbar spine. First a global rigid registration is performed to approximately align features. Bony structures are then segmented from the CT data using semi-automated process, and bounding boxes for each vertebra are established. Each CT subvolume is then individually registered to the MRI data using a piece-wise rigid registration algorithm and a mutual information image similarity measure. The resulting set of rigid transformations allows for accurate registration of the parts of the CT and MRI data representing the vertebrae, but not the adjacent soft tissue. To align the soft tissue, a smoothly-varying deformation is computed using a thin platespline(TPS) algorithm. The TPS technique requires a sparse set of landmarks that are to be brought into correspondence. These landmarks are automatically obtained from the segmented data using simple edge-detection techniques and random sampling from the edge candidates. A smoothness parameter is also included in the TPS formulation for characterization of the stiffness of the soft tissue. Estimation of an appropriate stiffness factor is obtained iteratively by using the mutual information cost function on the result

  19. A Fast Method for Aerial Image Registration Based on Improved SIFT%基于改进SIFT的航拍图像快速匹配方法

    Institute of Scientific and Technical Information of China (English)

    石钊铭; 耿伯英; 董银文

    2013-01-01

    Aimming at problems that the calculation of the feature descriptor is complex, the registration time is long and wrong registrations are many in the traditional SIFT algorithm, a fast method for aerial image registration based on improved SIFT is proposed. In the method a improved feature descriptor with 18 dimension consist of 12 gradient values in a circular window, 3 cumulative gray-scale value and 3 gray-scale difference in a concentric circular window. And the initial matched feature point pairs are obtained by the lateral matching method based on correlation coefficient similarity measurement rule. Finally, wrong registrations are removed and affine transformation model is computed by using RANSAC algorithm, and the transformed image is resampled and interpolated by bilinear interpolation. Experiments shows the method is more accurate and take less time than traditional SIFT algorithm in image registration.%针对传统SIFT算法存在特征描述符计算复杂,匹配时间长,错匹配较多等问题,提出了一种基于改进SIFT特征的航拍图像快速匹配方法.该方法采用基于圆形窗口的梯度方向累加值与同心圆形窗口内的灰度累加值、灰度差分值来构建18维的改进特征描述符,并在特征点匹配过程中,采用基于相关系数相似度量准则的双向匹配方法来获取初始匹配特征点对.最后,运用RANSAC算法进一步消除错配和估算仿射变换模型,并通过双线性插值法对变换后的图像进行重采样和插值.实验表明,该方法可以实现航拍图像之间的有效匹配,在匹配速度和匹配精度上优于传统SIFT算法,具有较好的实时性.

  20. An automatic high precision registration method between large area aerial images and aerial light detection and ranging data

    OpenAIRE

    Du, Q.; Xie, D; Sun, Y.

    2015-01-01

    The integration of digital aerial photogrammetry and Light Detetion And Ranging (LiDAR) is an inevitable trend in Surveying and Mapping field. We calculate the external orientation elements of images which identical with LiDAR coordinate to realize automatic high precision registration between aerial images and LiDAR data. There are two ways to calculate orientation elements. One is single image spatial resection using image matching 3D points that registered to LiDAR. The other o...

  1. Non-rigid body static model based miniature robotic arm pose estimation%基于非刚体静力模型的微型机械臂姿态估计

    Institute of Scientific and Technical Information of China (English)

    雷洋; 田书林; 程玉华

    2012-01-01

    A model based estimation approach is proposed to determine the real-time kinematic pose of a miniature cable driven robotic arm with ten passive planar rotation joints. A non-rigid body static equilibrium model is constructed, and the ten planar degree of freedom ( DOF) variables are transformed to one translational variable and one tensile force variable. An linear variable differential transformer(LVDT) sensor and a load cell are used in this robotic arm to measure the planar kinematic pose of its end actuator. The accuracy and error of the measurement results are analyzed; the advantage and insufficiency of this measurement approach are stated; and the proposed method is compared with other potential measurement schemes.%提出了一种针对具有10个被动平面转动关节的微型化柔索驱动机械臂运动姿态的实时估计方法.通过建立该微型机械臂的非刚体静力模型,将10个平面自由度变量转化为1个位移变量和1个张力变量.用一个线型差动变压位移传感器(linear variable differential transformer,LVDT)和一个微型载荷传感器(load cell)测量该微型机械臂终端执行器的平面运动姿态.通过对测量结果的精度和误差进行分析,指出了该测量方法的优势与不足,并与其他几种可能的测量方法进行了比较和讨论.

  2. Acute high-grade acromioclavicular joint injuries treatment: Arthroscopic non-rigid coracoclavicular fixation provides better quality of life outcomes than hook plate ORIF.

    Science.gov (United States)

    Natera-Cisneros, L; Sarasquete-Reiriz, J; Escolà-Benet, A; Rodriguez-Miralles, J

    2016-02-01

    Treatment of acute high-grade acromioclavicular joint (ACJ) injuries with metal hardware alters the biomechanics of the ACJ, implying a second surgery for hardware removal. The period during which the plate is present involves functional limitations, pain and a risk factor for the development of hardware-related-injuries. Arthroscopy-assisted procedures compared to open-metal hardware techniques offer: less morbidity, the possibility to treat associated lesions and no need for a second operation. The aim was to compare the Quality of life (QoL) of patients with acute high-grade ACJ injuries (Rockwood grade III-V), managed arthroscopically with a non-rigid coracoclavicular (CC) fixation versus the QoL of patients managed with a hook plate, 24 months or more after their shoulder injury. A retrospective revision of high-grade ACJ injuries managed in three institutions was performed. Patients treated by means of an arthroscopy-assisted CC fixation or by means of a hook plate were included. The inclusion period was between 2008 and 2012. The QoL was evaluated at the last follow-up visit by means of the SF36, the visual analog scale (VAS), the Disabilities of the Arm, Shoulder and Hand (DASH) questionnaire, the Constant score and the global satisfaction (scale from 0 to 10). The presence of scapular dyskinesis and remaining vertical instability were evaluated. Comparison between groups was performed. Thirty-one patients were included: 20 arthroscopy-group (ARTH group: 3 Rockwood III, 3 IV and 14 V) and 11 hook plate-group (HOOK group: 5 Rockwood III and 6 V). The mean age was 36 [25-52] year-old for the ARTH group and 41 [19-55] for the HOOK group (P=0.185). The mean results of the questionnaires were: (1) physical SF36 score (ARTH group 58.24±2.16 and HOOK group 53.70±4.33, P<0.001); (2) mental SF36 score (ARTH group 56.15±2.21 and HOOK group 53.06±6.10, P=0.049); (3) VAS (ARTH group 0.40±0.50 and HOOK group 1.45±1.51, P=0.007); (4) DASH (ARTH group 2.98±2.03 and

  3. Efficient methods for implementation of multi-level nonrigid mass-preserving image registration on GPUs and multi-threaded CPUs.

    Science.gov (United States)

    Ellingwood, Nathan D; Yin, Youbing; Smith, Matthew; Lin, Ching-Long

    2016-04-01

    Faster and more accurate methods for registration of images are important for research involved in conducting population-based studies that utilize medical imaging, as well as improvements for use in clinical applications. We present a novel computation- and memory-efficient multi-level method on graphics processing units (GPU) for performing registration of two computed tomography (CT) volumetric lung images. We developed a computation- and memory-efficient Diffeomorphic Multi-level B-Spline Transform Composite (DMTC) method to implement nonrigid mass-preserving registration of two CT lung images on GPU. The framework consists of a hierarchy of B-Spline control grids of increasing resolution. A similarity criterion known as the sum of squared tissue volume difference (SSTVD) was adopted to preserve lung tissue mass. The use of SSTVD consists of the calculation of the tissue volume, the Jacobian, and their derivatives, which makes its implementation on GPU challenging due to memory constraints. The use of the DMTC method enabled reduced computation and memory storage of variables with minimal communication between GPU and Central Processing Unit (CPU) due to ability to pre-compute values. The method was assessed on six healthy human subjects. Resultant GPU-generated displacement fields were compared against the previously validated CPU counterpart fields, showing good agreement with an average normalized root mean square error (nRMS) of 0.044±0.015. Runtime and performance speedup are compared between single-threaded CPU, multi-threaded CPU, and GPU algorithms. Best performance speedup occurs at the highest resolution in the GPU implementation for the SSTVD cost and cost gradient computations, with a speedup of 112 times that of the single-threaded CPU version and 11 times over the twelve-threaded version when considering average time per iteration using a Nvidia Tesla K20X GPU. The proposed GPU-based DMTC method outperforms its multi-threaded CPU version in terms

  4. Registration of acute stroke

    DEFF Research Database (Denmark)

    Wildenschild, Cathrine; Mehnert, Frank; Thomsen, Reimar Wernich

    2013-01-01

    BACKGROUND: The validity of the registration of patients in stroke-specific registries has seldom been investigated, nor compared with administrative hospital discharge registries. The objective of this study was to examine the validity of the registration of patients in a stroke-specific registry...... (The Danish Stroke Registry [DSR]) and a hospital discharge registry (The Danish National Patient Registry [DNRP]). METHODS: Assuming that all patients with stroke were registered in either the DSR, DNRP or both, we first identified a sample of 75 patients registered with stroke in 2009; 25 patients...... in the DSR, 25 patients in the DNRP, and 25 patients registered in both data sources. Using the medical record as a gold standard, we then estimated the sensitivity and positive predictive value of a stroke diagnosis in the DSR and the DNRP. Secondly, we reviewed 160 medical records for all potential stroke...

  5. Intervertebral anticollision constraints improve out-of-plane translation accuracy of a single-plane fluoroscopy-to-CT registration method for measuring spinal motion

    Energy Technology Data Exchange (ETDEWEB)

    Lin, Cheng-Chung; Tsai, Tsung-Yuan; Hsu, Shih-Jung [Institute of Biomedical Engineering, National Taiwan University, Taiwan 10051 (China); Lu, Tung-Wu [Institute of Biomedical Engineering, National Taiwan University, Taiwan 10051, Republic of China and Department of Orthopaedic Surgery, School of Medicine, National Taiwan University, Taiwan 10617 (China); Shih, Ting-Fang [Department of Medical Imaging, National Taiwan University, Taiwan 10051 (China); Wang, Ting-Ming [Department of Orthopaedic Surgery, National Taiwan University Hospital, Taiwan 10051 (China)

    2013-03-15

    Purpose: The study aimed to propose a new single-plane fluoroscopy-to-CT registration method integrated with intervertebral anticollision constraints for measuring three-dimensional (3D) intervertebral kinematics of the spine; and to evaluate the performance of the method without anticollision and with three variations of the anticollision constraints via an in vitro experiment. Methods: The proposed fluoroscopy-to-CT registration approach, called the weighted edge-matching with anticollision (WEMAC) method, was based on the integration of geometrical anticollision constraints for adjacent vertebrae and the weighted edge-matching score (WEMS) method that matched the digitally reconstructed radiographs of the CT models of the vertebrae and the measured single-plane fluoroscopy images. Three variations of the anticollision constraints, namely, T-DOF, R-DOF, and A-DOF methods, were proposed. An in vitro experiment using four porcine cervical spines in different postures was performed to evaluate the performance of the WEMS and the WEMAC methods. Results: The WEMS method gave high precision and small bias in all components for both vertebral pose and intervertebral pose measurements, except for relatively large errors for the out-of-plane translation component. The WEMAC method successfully reduced the out-of-plane translation errors for intervertebral kinematic measurements while keeping the measurement accuracies for the other five degrees of freedom (DOF) more or less unaltered. The means (standard deviations) of the out-of-plane translational errors were less than -0.5 (0.6) and -0.3 (0.8) mm for the T-DOF method and the R-DOF method, respectively. Conclusions: The proposed single-plane fluoroscopy-to-CT registration method reduced the out-of-plane translation errors for intervertebral kinematic measurements while keeping the measurement accuracies for the other five DOF more or less unaltered. With the submillimeter and subdegree accuracy, the WEMAC method was

  6. Spherical Demons: Fast Surface Registration

    Science.gov (United States)

    Yeo, B.T. Thomas; Sabuncu, Mert; Vercauteren, Tom; Ayache, Nicholas; Fischl, Bruce; Golland, Polina

    2009-01-01

    We present the fast Spherical Demons algorithm for registering two spherical images. By exploiting spherical vector spline interpolation theory, we show that a large class of regularizers for the modified demons objective function can be efficiently implemented on the sphere using convolution. Based on the one parameter subgroups of diffeomorphisms, the resulting registration is diffeomorphic and fast – registration of two cortical mesh models with more than 100k nodes takes less than 5 minutes, comparable to the fastest surface registration algorithms. Moreover, the accuracy of our method compares favorably to the popular FreeSurfer registration algorithm. We validate the technique in two different settings: (1) parcellation in a set of in-vivo cortical surfaces and (2) Brodmann area localization in ex-vivo cortical surfaces. PMID:18979813

  7. A volumetric model-based 2D to 3D registration method for measuring kinematics of natural knees with single-plane fluoroscopy

    Energy Technology Data Exchange (ETDEWEB)

    Tsai, Tsung-Yuan; Lu, Tung-Wu; Chen, Chung-Ming; Kuo, Mei-Ying; Hsu, Horng-Chaung [Institute of Biomedical Engineering, National Taiwan University, No. 1, Sec. 1, Jen-Ai Road, Taipei 10051, Taiwan (China); Institute of Biomedical Engineering, National Taiwan University, No. 1, Sec. 1, Jen-Ai Road, Taipei 10051, Taiwan (China) and Department of Physical Therapy, China Medical University, Taichung 40402, Taiwan (China); Department of Orthopaedic Surgery, China Medical University Hospital, Taichung 40447, Taiwan (China)

    2010-03-15

    Purpose: Accurate measurement of the three-dimensional (3D) rigid body and surface kinematics of the natural human knee is essential for many clinical applications. Existing techniques are limited either in their accuracy or lack more realistic experimental evaluation of the measurement errors. The purposes of the study were to develop a volumetric model-based 2D to 3D registration method, called the weighted edge-matching score (WEMS) method, for measuring natural knee kinematics with single-plane fluoroscopy to determine experimentally the measurement errors and to compare its performance with that of pattern intensity (PI) and gradient difference (GD) methods. Methods: The WEMS method gives higher priority to matching of longer edges of the digitally reconstructed radiograph and fluoroscopic images. The measurement errors of the methods were evaluated based on a human cadaveric knee at 11 flexion positions. Results: The accuracy of the WEMS method was determined experimentally to be less than 0.77 mm for the in-plane translations, 3.06 mm for out-of-plane translation, and 1.13 deg. for all rotations, which is better than that of the PI and GD methods. Conclusions: A new volumetric model-based 2D to 3D registration method has been developed for measuring 3D in vivo kinematics of natural knee joints with single-plane fluoroscopy. With the equipment used in the current study, the accuracy of the WEMS method is considered acceptable for the measurement of the 3D kinematics of the natural knee in clinical applications.

  8. Registration-based filtering: An acceptable tool for noise reduction in left ventricular dynamic rotational angiography images?

    Science.gov (United States)

    Wielandts, Jean-Yves; De Buck, Stijn; Ector, Joris; Nuyens, Dieter; Maes, Frederik; Heidbuchel, Hein

    2014-03-01

    VT ablations could benefit from Dynamic 3D (4D) left ventricle (LV) visualization as road-map for anatomy-guided procedures. We developed a registration-based method that combines information of several cardiac phases to filter out noise and artifacts in low-dose 3D Rotational Angiography (3DRA) images. This also enables generation of accurate multi-phase surface models by semi-automatic segmentation (SAS). The method uses B-spline non-rigid inter-phase registration (IPR) and subsequent averaging of the registered 3DRA images of 4 cardiac phases, acquired with a slow atrial pacing protocol, and was validated on data from 5 porcine experiments. IPR parameter settings were optimized against manual delineations of the LVs using a composed similarity score (Q), dependent on DICE-coefficient, RMSDistance, Hausdorff (HD) and the percentage of inter-surface distances ≤3mm and ≤4mm. The latter are clinically acceptable error cut-off values. Validation was performed after SAS for varying voxel intensity thresholds (ISO), by comparison between models with and without prior use of IPR. Distances to the manual delineations at optimal ISO were reduced to ≤3mm for 95.6±2.7% and to ≤4mm for 97.1±2.0% of model surfaces. Improved quality was proven by significant mean Q-increase irrespective of ISO (7.6% at optimal ISO (95%CI 4.6-10.5,pmodels proved feasible, with sufficient accuracy for clinical applications, opening the perspective of more accurate overlay and guidance during ablation in locations with high degrees of movement.

  9. A survey of medical image registration - under review.

    Science.gov (United States)

    Viergever, Max A; Maintz, J B Antoine; Klein, Stefan; Murphy, Keelin; Staring, Marius; Pluim, Josien P W

    2016-10-01

    A retrospective view on the past two decades of the field of medical image registration is presented, guided by the article "A survey of medical image registration" (Maintz and Viergever, 1998). It shows that the classification of the field introduced in that article is still usable, although some modifications to do justice to advances in the field would be due. The main changes over the last twenty years are the shift from extrinsic to intrinsic registration, the primacy of intensity-based registration, the breakthrough of nonlinear registration, the progress of inter-subject registration, and the availability of generic image registration software packages. Two problems that were called urgent already 20 years ago, are even more urgent nowadays: Validation of registration methods, and translation of results of image registration research to clinical practice. It may be concluded that the field of medical image registration has evolved, but still is in need of further development in various aspects.

  10. Size variation and collapse of emphysema holes at inspiration and expiration CT scan: evaluation with modified length scale method and image co-registration.

    Science.gov (United States)

    Oh, Sang Young; Lee, Minho; Seo, Joon Beom; Kim, Namkug; Lee, Sang Min; Lee, Jae Seung; Oh, Yeon Mok

    2017-01-01

    A novel approach of size-based emphysema clustering has been developed, and the size variation and collapse of holes in emphysema clusters are evaluated at inspiratory and expiratory computed tomography (CT). Thirty patients were visually evaluated for the size-based emphysema clustering technique and a total of 72 patients were evaluated for analyzing collapse of the emphysema hole in this study. A new approach for the size differentiation of emphysema holes was developed using the length scale, Gaussian low-pass filtering, and iteration approach. Then, the volumetric CT results of the emphysema patients were analyzed using the new method, and deformable registration was carried out between inspiratory and expiratory CT. Blind visual evaluations of EI by two readers had significant correlations with the classification using the size-based emphysema clustering method (r-values of reader 1: 0.186, 0.890, 0.915, and 0.941; reader 2: 0.540, 0.667, 0.919, and 0.942). The results of collapse of emphysema holes using deformable registration were compared with the pulmonary function test (PFT) parameters using the Pearson's correlation test. The mean extents of low-attenuation area (LAA), E1 (size variation and collapse of emphysema holes may be useful for understanding the dynamic collapse of emphysema and its functional relation.

  11. Mass preserving image registration for lung CT

    DEFF Research Database (Denmark)

    Gorbunova, Vladlena; Sporring, Jon; Lo, Pechin Chien Pau

    2012-01-01

    This paper presents a mass preserving image registration algorithm for lung CT images. To account for the local change in lung tissue intensity during the breathing cycle, a tissue appearance model based on the principle of preservation of total lung mass is proposed. This model is incorporated...... into a standard image registration framework with a composition of a global affine and several free-form B-Spline transformations with increasing grid resolution. The proposed mass preserving registration method is compared to registration using the sum of squared intensity differences as a similarity function...... inhale phases of 4D-CT images. Registration errors, measured as the average distance between vessel tree centerlines in the matched images, are significantly lower for the proposed mass preserving image registration method in the second, third and fourth group, while there is no statistically significant...

  12. 大区域无人机图像序列全局配准方法%Global registration method of image sequence taken by UAV in large region

    Institute of Scientific and Technical Information of China (English)

    周行; 周东翔; 彭科举; 郭瑞斌; 樊玮虹

    2015-01-01

    由于无人机搭载的摄相机视角有限,在进行大区域航拍作业的后期数据处理中不可避免地要进行大量无人机图像的拼接.这里提出一种基于图像分布估计的多图像全局配准技术,首先通过运动估计和运动分解对图像序列的链式分布进行估计,然后通过精确SURF特征匹配对图像分布进行优化.得到的分布估计图的每一条边表征了一个图像对的匹配关系,根据这些匹配关系进行捆绑调整,求解每幅图像到最终拼接平面的最优变换矩阵,从而实现大区域多图像的全局配准.实验所得的拼接结果表明该技术配准效率高、效果良好.%For the limited visual angle of the camera carried by UAV,a large number of mosaicing of images taken by UAV is inevitable in the later processing of the large region aerial photo mission. A multi-image global registration technology based on image distribution estimation is proposed. The chain distribution of the image sequence is estimated by using motion es-timation and motion decomposition,and then the image distribution is optimized by precise SURF feature matching. Each edge of the obtained distribution estimation images characters the matching relation of an image pair. The binding adjustment is con-ducted according to the matching relation to solve the optimal transformation matrix from each image to the final mosaic plane, and achieve the multi-image global registration in the large region. The mosaic results from the experiment show that the method has high registration efficiency,and better registration result.

  13. SU-E-J-119: What Effect Have the Volume Defined in the Alignment Clipbox for Cervical Cancer Using Automatic Registration Methods for Cone- Beam CT Verification?

    Energy Technology Data Exchange (ETDEWEB)

    Wang, W; Yang, H; Wang, Y; Jia, H; Xie, Y [Taizhou Hospital, Wenzhou Medical College, Taizhou, Zhejiang (China)

    2014-06-01

    Purpose: To investigate the impact of different clipbox volumes with automated registration techniques using commercially available software with on board volumetric imaging(OBI) for treatment verification in cervical cancer patients. Methods: Fifty cervical cancer patients received daily CBCT scans(on-board imaging v1.5 system, Varian Medical Systems) during the first treatment week and weekly thereafter were included this analysis. A total of 450 CBCT scans were registered to the planning CTscan using pelvic clipbox(clipbox-Pelvic) and around PTV clip box(clipbox- PTV). The translations(anterior-posterior, left-right, superior-inferior) and the rotations(yaw, pitch and roll) errors for each matches were recorded. The setup errors and the systematic and random errors for both of the clip-boxes were calculated. Paired Samples t test was used to analysis the differences between clipbox-Pelvic and clipbox-PTV. Results: . The SD of systematic error(σ) was 1.0mm, 2.0mm,3.2mm and 1.9mm,2.3mm, 3.0mm in the AP, LR and SI directions for clipbox-Pelvic and clipbox-PTV, respectively. The average random error(Σ)was 1.7mm, 2.0mm,4.2mm and 1.7mm,3.4mm, 4.4mm in the AP, LR and SI directions for clipbox-Pelvic and clipbox-PTV, respectively. But, only the SI direction was acquired significantly differences between two image registration volumes(p=0.002,p=0.01 for mean and SD). For rotations, the yaw mean/SD and the pitch SD were acquired significantly differences between clipbox-Pelvic and clipbox-PTV. Conclusion: The defined volume for Image registration is important for cervical cancer when 3D/3D match was used. The alignment clipbox can effect the setup errors obtained. Further analysis is need to determine the optimal defined volume to use the image registration in cervical cancer. Conflict of interest: none.

  14. Automated analysis of small animal PET studies through deformable registration to an atlas

    Energy Technology Data Exchange (ETDEWEB)

    Gutierrez, Daniel F. [Geneva University Hospital, Division of Nuclear Medicine and Molecular Imaging, Geneva 4 (Switzerland); Zaidi, Habib [Geneva University Hospital, Division of Nuclear Medicine and Molecular Imaging, Geneva 4 (Switzerland); Geneva University, Geneva Neuroscience Center, Geneva (Switzerland); University of Groningen, Department of Nuclear Medicine and Molecular Imaging, University Medical Center Groningen, Groningen (Netherlands)

    2012-11-15

    This work aims to develop a methodology for automated atlas-guided analysis of small animal positron emission tomography (PET) data through deformable registration to an anatomical mouse model. A non-rigid registration technique is used to put into correspondence relevant anatomical regions of rodent CT images from combined PET/CT studies to corresponding CT images of the Digimouse anatomical mouse model. The latter provides a pre-segmented atlas consisting of 21 anatomical regions suitable for automated quantitative analysis. Image registration is performed using a package based on the Insight Toolkit allowing the implementation of various image registration algorithms. The optimal parameters obtained for deformable registration were applied to simulated and experimental mouse PET/CT studies. The accuracy of the image registration procedure was assessed by segmenting mouse CT images into seven regions: brain, lungs, heart, kidneys, bladder, skeleton and the rest of the body. This was accomplished prior to image registration using a semi-automated algorithm. Each mouse segmentation was transformed using the parameters obtained during CT to CT image registration. The resulting segmentation was compared with the original Digimouse atlas to quantify image registration accuracy using established metrics such as the Dice coefficient and Hausdorff distance. PET images were then transformed using the same technique and automated quantitative analysis of tracer uptake performed. The Dice coefficient and Hausdorff distance show fair to excellent agreement and a mean registration mismatch distance of about 6 mm. The results demonstrate good quantification accuracy in most of the regions, especially the brain, but not in the bladder, as expected. Normalized mean activity estimates were preserved between the reference and automated quantification techniques with relative errors below 10 % in most of the organs considered. The proposed automated quantification technique is

  15. Methods for abdominal respiratory motion tracking.

    Science.gov (United States)

    Spinczyk, Dominik; Karwan, Adam; Copik, Marcin

    2014-01-01

    Non-invasive surface registration methods have been developed to register and track breathing motions in a patient's abdomen and thorax. We evaluated several different registration methods, including marker tracking using a stereo camera, chessboard image projection, and abdominal point clouds. Our point cloud approach was based on a time-of-flight (ToF) sensor that tracked the abdominal surface. We tested different respiratory phases using additional markers as landmarks for the extension of the non-rigid Iterative Closest Point (ICP) algorithm to improve the matching of irregular meshes. Four variants for retrieving the correspondence data were implemented and compared. Our evaluation involved 9 healthy individuals (3 females and 6 males) with point clouds captured in opposite breathing phases (i.e., inhalation and exhalation). We measured three factors: surface distance, correspondence distance, and marker error. To evaluate different methods for computing the correspondence measurements, we defined the number of correspondences for every target point and the average correspondence assignment error of the points nearest the markers.

  16. The role of professional education in developing compassionate practitioners: a mixed methods study exploring the perceptions xof health professionals and pre-registration students.

    Science.gov (United States)

    Bray, Lucy; O'Brien, Mary R; Kirton, Jennifer; Zubairu, Kate; Christiansen, Angela

    2014-03-01

    Compassionate practice is a public expectation and a core health professional value. However, in the face of growing public and professional unease about a perceived absence of compassion in health care it is essential that the role of education in developing compassionate practitioners is fully understood. The aim of this study was to explore qualified health professionals' and pre-registration students' understanding of compassion and the role of health professional education in promoting compassionate care. A sequential explanatory mixed methods study collected data using surveys and qualitative semi-structured interviews from qualified health professionals (n=155) and pre-registration students (n=197). Participants were from a range of health and social care disciplines and registered at a UK university. The findings indicate a high level of consensus in relation to participants' understanding of compassion in health care. Acting with warmth and empathy, providing individualised patient care and acting in a way you would like others to act towards you, were seen as the most common features of compassionate care. However, ambiguities and contradictions were evident when considering the role of health professional education in promoting compassionate practice. This study adds to the debate and current understanding of the role of education in fostering compassionate health care practice.

  17. A Three Dimensional Registration Method Based on Intra-spacecraft Images%一种基于舱内图像的三维注册方法

    Institute of Scientific and Technical Information of China (English)

    郑奔; 刘玉庆; 朱秀庆

    2013-01-01

    Objective To build a three dimensional(3D) registration of augmented reality for spacecraft, a novel method of image feature extraction was proposed in this paper. Methods The binaryzation and morphological processing were performed for the images and the Hu moments of the subarea' s boundaries were calculated and compared with the prepared moments of the features by the weighted distance. In the end, the image features were matched by the decision-making tree. Results Preliminary results showed that this method could accurately and quickly match the image feature of inner spacecraft. Conclusion The method could meet the nature feature of inner spacecraft' s three dimensional registration technical requirements and has a promising application perspective.%目的 在舱内环境中实现基于自然特征的增强现实三维(3D)注册技术,提出一种适合舱内环境中的图像自然特征提取方法.方法 首先对图像进行边缘处理并进行二值化,计算各边缘的Hu矩,得到边缘特征值,并将其与事先准备好的舱内仪表板图形特征值进行比较判别,最后用一种决策树方法来匹配舱内仪表.结果 准确并较为快速地实现舱内图像的特征提取和匹配表明.结论 此方法能够满足舱内自然特征3D注册要求,具有良好的应用前景.

  18. Radar image registration and rectification

    Science.gov (United States)

    Naraghi, M.; Stromberg, W. D.

    1983-01-01

    Two techniques for radar image registration and rectification are presented. In the registration method, a general 2-D polynomial transform is defined to accomplish the geometric mapping from one image into the other. The degree and coefficients of the polynomial are obtained using an a priori found tiepoint data set. In the second part of the paper, a rectification procedure is developed that models the distortion present in the radar image in terms of the radar sensor's platform parameters and the topographic variations of the imaged scene. This model, the ephemeris data and the digital topographic data are then used in rectifying the radar image. The two techniques are then used in registering and rectifying two examples of radar imagery. Each method is discussed as to its benefits, shortcomings and registration accuracy.

  19. A Quick Multi-view Registration Method Research%一种快速多视拼接方法研究

    Institute of Scientific and Technical Information of China (English)

    王荣华; 张华; 徐锋

    2015-01-01

    The measurement technology of 3D scanning in automation level is low, its measurement process is not stable, and the measurement error is large. After the principle of binocular structured light measurement was analyzed, match the marked point to multi-view registration based on the relative distance of any two marked point in space is unchanged. A multi-view registration is proposed using triangle constraint and global optimization. The method includes: remove the false matching points in possible matching points by joining triple constraint; after the first registration, use the center of marking points to global optimization though least squares principle method. The algorithm is written by VC++and OpenCV, and the algorithm is carried out by experi⁃ments test. The measurement results show that this method has advantage of restrain the accumulation error, keep up the process stable, fast and automatic.%针对3D扫描测量领域自动化水平不高,测量不稳定,测量误差较大的现状,在双目结构光测量系统基于空间点相对距离不变性的多视拼接中,提出了一种基于三角约束和全局优化的多视拼接方法。该方法包括:匹配标记点时对由点距约束求得的可能匹配点加入三角约束,去除误匹配点;初次拼接后,根据求得的重心用最小二乘法进行全局优化,得到优化后的拼接矩。通过VC++,OpenCV等工具的算法实现表明:该方法能够较好地抑制累积误差,拼接方法稳定、快速,能实现自动化拼接。

  20. Non-Rigid Medical Image Registration Based on the Thin-Plate Spline%基于薄板样条的非刚体医学图像配准

    Institute of Scientific and Technical Information of China (English)

    方柏林; 唐慧慧

    2010-01-01

    非刚体图象配准是非线性的图像配准方法,它能够实现图像之间的配准,为提高医学图像配准精度,对于形变较大的多模图像的配准等都有着重要的作用.提出了一种基于薄板样条的3D/2D非刚体医学图象配准算法,算法首先提出一个混合能量公式,在配准的过程中,用薄板样条法实现全局配准,并通过仿真退火算法进行迭代,以缩小并确定变形的待配准区域.在局部的待配准区域,采用互信息的方法进行配准.解决了因特征点不足引起的不完整匹配问题,使得图像连续平滑,以得到较优的配准效果.

  1. Mutual Information Based Registration for 3D Non-Rigid Medical Images%基于互信息非刚性医学图像配准的方法

    Institute of Scientific and Technical Information of China (English)

    陈昱; 庄天戈

    1999-01-01

    提出了一种基于互信息的对非刚性三维医学图像进行弹性配准的方法.用2D联合直方图法计算两幅图像重叠部分的图像灰度之间的互信息,使之最大化,从而实现两图像之间的全局仿射配准.然后将两幅图像的重叠部分均分成互为重叠的体积子块,再最大化每对对应体积子块图像灰度之间的互信息,实现每对对应子决的局部刚体配准,并将每个子块的中心作为一一对应的控制点.利用这些均匀分布的控制点对结合薄平板样条插值法实现图像的全局非刚性弹性配准.实验结果表明,该算法可以有效地实现三维图像全局弹性配准,但计算时间较长.

  2. Quantitative assessment of global and regional air trappings using non-rigid registration and regional specific volume change of inspiratory/expiratory CT scans: Studies on healthy volunteers and asthmatics

    Energy Technology Data Exchange (ETDEWEB)

    Lee, Eun Sol; Seo, Joon Beom; Lee, Hyun Joo; Chae, Eun Jin; Lee, Sang Min; Oh, Sang Young; Kim, Nam Kug [Dept. of Radiology and Research Institute of Radiology, Asan Medical Center, University of Ulsan College of Medicine, Seoul (Korea, Republic of)

    2015-06-15

    The purpose of this study was to compare air trapping in healthy volunteers with asthmatics using pulmonary function test and quantitative data, such as specific volume change from paired inspiratory CT and registered expiratory CT. Sixteen healthy volunteers and 9 asthmatics underwent paired inspiratory/expiratory CT. DeltaSV, which represents the ratio of air fraction released after exhalation, was measured with paired inspiratory and anatomically registered expiratory CT scans. Air trapping indexes, DeltaSV0.4 and DeltaSV0.5, were defined as volume fraction of lung below 0.4 and 0.5 DeltaSV, respectively. To assess the gravity effect of air-trapping, DeltaSV values of anterior and posterior lung at three different levels were measured and DeltaSV ratio of anterior lung to posterior lung was calculated. Color-coded DeltaSV map of the whole lung was generated and visually assessed. Mean DeltaSV, DeltaSV0.4, and DeltaSV0.5 were compared between healthy volunteers and asthmatics. In asthmatics, correlation between air trapping indexes and clinical parameters were assessed. Mean DeltaSV, DeltaSV0.4, and DeltaSV0.5 in asthmatics were significantly higher than those in healthy volunteer group (all p < 0.05). DeltaSV values in posterior lung in asthmatics were significantly higher than those in healthy volunteer group (p = 0.049). In asthmatics, air trapping indexes, such as DeltaSV0.5 and DeltaSV0.4, showed negative strong correlation with FEF25-75, FEV1, and FEV1/FVC. DeltaSV map of asthmatics showed abnormal geographic pattern in 5 patients (55.6%) and disappearance of anterior-posterior gradient in 3 patients (33.3%). Quantitative assessment of DeltaSV (the ratio of air fraction released after exhalation) shows the difference in extent of air trapping between health volunteers and asthmatics.

  3. Research on Intensity and Shape Based Non-rigid Image Registration%基于灰度和形状的非刚性图像配准算法的研究

    Institute of Scientific and Technical Information of China (English)

    林相波; 邱天爽; RUAN Su; Frédéric Morain-Nicolier

    2009-01-01

    提出一种新的灰度和形状信息相结合的全自动同模态医学图像非刚性配准-分割算法,将欧氏距离表示的形状信息融入基于灰度的配准算法中,构造出新的代价函数.该算法在医学图像多目标分割的应用中,能够较好地完成灰度相近、边缘模糊、间距较小的不同结构的分割.对5组真实脑部MRI图像进行分割脑深层灰质结构的实验,结果表明,本算法优于基于灰度信息的图像配准算法.

  4. 基于SIFT算法的InSAR影像配准方法试验研究%Research on the Co-registration Method of INSAR Based on the SIFT Algorithm

    Institute of Scientific and Technical Information of China (English)

    喻小东; 郭际明; 黄长军; 袁长征

    2013-01-01

    配准是合成孔径雷达干涉测量(InSAR)中极其关键的一个步骤.本文详细介绍了SIFT算法,并根据其特点将其应用于InSAR数据的配准过程中.实验结果表明:SIFT算法在InSAR配准中是一种简单、有效和可靠的配准方法.%Co-registration is an important processing in Synthetic aperture radar interferometry (INSAR). This paper describes the SIFT algorithm,and then applies this method to the registration of INSAR. Experiments show that the co-registration method of SIFT is effective and reliable than the regular method.

  5. Multi-modal image registration using structural features.

    Science.gov (United States)

    Kasiri, Keyvan; Clausi, David A; Fieguth, Paul

    2014-01-01

    Multi-modal image registration has been a challenging task in medical images because of the complex intensity relationship between images to be aligned. Registration methods often rely on the statistical intensity relationship between the images which suffers from problems such as statistical insufficiency. The proposed registration method works based on extracting structural features by utilizing the complex phase and gradient-based information. By employing structural relationships between different modalities instead of complex similarity measures, the multi-modal registration problem is converted into a mono-modal one. Therefore, conventional mono-modal similarity measures can be utilized to evaluate the registration results. This new registration paradigm has been tested on magnetic resonance (MR) brain images of different modes. The method has been evaluated based on target registration error (TRE) to determine alignment accuracy. Quantitative results demonstrate that the proposed method is capable of achieving comparable registration accuracy compared to the conventional mutual information.

  6. Sci—Thur AM: YIS - 11: Estimation of Bladder-Wall Cumulative Dose in Multi-Fraction Image-Based Gynaecological Brachytherapy Using Deformable Point Set Registration

    Energy Technology Data Exchange (ETDEWEB)

    Zakariaee, R [Physics Department, University of British Columbia, Vancouver, BC (Canada); Brown, C J; Hamarneh, G [School of Computing Science, Simon Fraser University, Burnaby, BC (Canada); Parsons, C A; Spadinger, I [British Columbia Cancer Agency, Vancouver, BC (Canada)

    2014-08-15

    Dosimetric parameters based on dose-volume histograms (DVH) of contoured structures are routinely used to evaluate dose delivered to target structures and organs at risk. However, the DVH provides no information on the spatial distribution of the dose in situations of repeated fractions with changes in organ shape or size. The aim of this research was to develop methods to more accurately determine geometrically localized, cumulative dose to the bladder wall in intracavitary brachytherapy for cervical cancer. The CT scans and treatment plans of 20 cervical cancer patients were used. Each patient was treated with five high-dose-rate (HDR) brachytherapy fractions of 600cGy prescribed dose. The bladder inner and outer surfaces were delineated using MIM Maestro software (MIM Software Inc.) and were imported into MATLAB (MathWorks) as 3-dimensional point clouds constituting the “bladder wall”. A point-set registration toolbox for MATLAB, Coherent Point Drift (CPD), was used to non-rigidly transform the bladder-wall points from four of the fractions to the coordinate system of the remaining (reference) fraction, which was chosen to be the emptiest bladder for each patient. The doses were accumulated on the reference fraction and new cumulative dosimetric parameters were calculated. The LENT-SOMA toxicity scores of these patients were studied against the cumulative dose parameters. Based on this study, there was no significant correlation between the toxicity scores and the determined cumulative dose parameters.

  7. ACIR: automatic cochlea image registration

    Science.gov (United States)

    Al-Dhamari, Ibraheem; Bauer, Sabine; Paulus, Dietrich; Lissek, Friedrich; Jacob, Roland

    2017-02-01

    Efficient Cochlear Implant (CI) surgery requires prior knowledge of the cochlea's size and its characteristics. This information helps to select suitable implants for different patients. To get these measurements, a segmentation method of cochlea medical images is needed. An important pre-processing step for good cochlea segmentation involves efficient image registration. The cochlea's small size and complex structure, in addition to the different resolutions and head positions during imaging, reveals a big challenge for the automated registration of the different image modalities. In this paper, an Automatic Cochlea Image Registration (ACIR) method for multi- modal human cochlea images is proposed. This method is based on using small areas that have clear structures from both input images instead of registering the complete image. It uses the Adaptive Stochastic Gradient Descent Optimizer (ASGD) and Mattes's Mutual Information metric (MMI) to estimate 3D rigid transform parameters. The use of state of the art medical image registration optimizers published over the last two years are studied and compared quantitatively using the standard Dice Similarity Coefficient (DSC). ACIR requires only 4.86 seconds on average to align cochlea images automatically and to put all the modalities in the same spatial locations without human interference. The source code is based on the tool elastix and is provided for free as a 3D Slicer plugin. Another contribution of this work is a proposed public cochlea standard dataset which can be downloaded for free from a public XNAT server.

  8. Surface-to-surface registration using level sets

    DEFF Research Database (Denmark)

    Hansen, Mads Fogtmann; Erbou, Søren G.; Vester-Christensen, Martin;

    2007-01-01

    This paper presents a general approach for surface-to-surface registration (S2SR) with the Euclidean metric using signed distance maps. In addition, the method is symmetric such that the registration of a shape A to a shape B is identical to the registration of the shape B to the shape A. The S2S...

  9. Registration Method for Unmanned Aerial Vehicle Images Based on Point Feature and Edge Feature%基于点特征和边缘特征的无人机影像配准方法

    Institute of Scientific and Technical Information of China (English)

    何敬; 李永树; 李歆; 唐敏

    2012-01-01

    为解决变形较大的无人机影像配准问题,提出了点特征和边缘特征相结合的配准方法.用尺度不变特征变换(SIFT)算法提取点特征,完成影像的初步配准,并通过多项式函数对影像进行粗校正.在此基础上提取影像的边缘特征信息,根据距离相似性对边缘特征信息进行配准;依据色彩能量差筛选点特征信息配准结果和边缘特征信息配准结果,采用小面元微分校正的方法对变形影像进行校正.实验结果表明:提出的配准方法能够弥补点特征配准方法和边缘特征配准方法的不足,其配准的鲁棒性提高10%左右,可以较好地完成变形较大的无人机影像配准.%To solve the problem of registration of unmanned aerial vehicle (UAV) images with a large distortion, an improved method based on the combination of point and line features was proposed. With this method, preparatory registration is completed by extracting point features with the scale invariant feature transform (SIFT) algorithm, and a polynomial function is used to correct an image coarsely. On the basis of the above, the edge features of the image are extracted, and the registration of the edge features is carried out based on the distance similarity- The registration results of point and edge features are filtered by utilizing the color energy difference. A small-bin based differential correction method is used for finally accurate correction. The experimental results show that the proposed method can overcome the drawbacks of the point feature registration and the edge feature registration, the registration robustness is improved by 10% , and it can effectively complete the registration of UAV images with a large distortion.

  10. An acousto-optical method for registration of erythrocytes' agglutination reaction—sera color influence on the resolving power

    Science.gov (United States)

    Doubrovski, V. A.; Medvedeva, M. F.; Torbin, S. O.

    2016-01-01

    The absorption spectra of agglutinating sera were used to determine blood groups. It was shown experimentally that the sera color significantly affects the resolving power of the acousto-optical method of blood typing. In order to increase the resolving power of the method and produce an invariance of the method for sera color, we suggested introducing a probing light beam individually for different sera. The proposed technique not only improves the resolving power of the method, but also reduces the risk of false interpretation of the experimental results and, hence, error in determining the blood group of the sample. The latter is especially important for the typing of blood samples with weak agglutination of erythrocytes. This study can be used in the development of an instrument for instrumental human blood group typing based on the acousto-optical method.

  11. Multiple Kernel Point Set Registration.

    Science.gov (United States)

    Nguyen, Thanh Minh; Wu, Q M Jonathan

    2016-06-01

    The finite Gaussian mixture model with kernel correlation is a flexible tool that has recently received attention for point set registration. While there are many algorithms for point set registration presented in the literature, an important issue arising from these studies concerns the mapping of data with nonlinear relationships and the ability to select a suitable kernel. Kernel selection is crucial for effective point set registration. We focus here on multiple kernel point set registration. We make several contributions in this paper. First, each observation is modeled using the Student's t-distribution, which is heavily tailed and more robust than the Gaussian distribution. Second, by automatically adjusting the kernel weights, the proposed method allows us to prune the ineffective kernels. This makes the choice of kernels less crucial. After parameter learning, the kernel saliencies of the irrelevant kernels go to zero. Thus, the choice of kernels is less crucial and it is easy to include other kinds of kernels. Finally, we show empirically that our model outperforms state-of-the-art methods recently proposed in the literature.

  12. Introduction to Remote Sensing Image Registration

    Science.gov (United States)

    Le Moigne, Jacqueline

    2017-01-01

    For many applications, accurate and fast image registration of large amounts of multi-source data is the first necessary step before subsequent processing and integration. Image registration is defined by several steps and each step can be approached by various methods which all present diverse advantages and drawbacks depending on the type of data, the type of applications, the a prior information known about the data and the type of accuracy that is required. This paper will first present a general overview of remote sensing image registration and then will go over a few specific methods and their applications

  13. Diffeomorphic Anatomical Registration Through Exponentiated Lie Algebra provides reduced effect of scanner for cortex volumetry with atlas-based method in healthy subjects

    Energy Technology Data Exchange (ETDEWEB)

    Goto, Masami; Ino, Kenji; Yano, Keiichi [University of Tokyo Hospital, Department of Radiological Technology, Bunkyo-ku, Tokyo (Japan); Abe, Osamu [Nihon University School of Medicine, Department of Radiology, Itabashi-ku, Tokyo (Japan); Aoki, Shigeki [Juntendo University, Department of Radiology, Bunkyo-ku, Tokyo (Japan); Hayashi, Naoto [University of Tokyo Hospital, Department of Computational Diagnostic Radiology and Preventive Medicine, Bunkyo-ku, Tokyo (Japan); Miyati, Tosiaki [Kanazawa University, Graduate School of Medical Science, Kanazawa (Japan); Takao, Hidemasa; Mori, Harushi; Kunimatsu, Akira; Ohtomo, Kuni [University of Tokyo Hospital, Department of Radiology and Department of Computational Diagnostic Radiology and Preventive Medicine, Bunkyo-ku, Tokyo (Japan); Iwatsubo, Takeshi [University of Tokyo, Department of Neuropathology, Bunkyo-ku, Tokyo (Japan); Yamashita, Fumio [Iwate Medical University, Department of Radiology, Yahaba, Iwate (Japan); Matsuda, Hiroshi [Integrative Brain Imaging Center National Center of Neurology and Psychiatry, Department of Nuclear Medicine, Kodaira, Tokyo (Japan); Collaboration: Japanese Alzheimer' s Disease Neuroimaging Initiative

    2013-07-15

    This study aimed to investigate whether the effect of scanner for cortex volumetry with atlas-based method is reduced using Diffeomorphic Anatomical Registration Through Exponentiated Lie Algebra (DARTEL) normalization compared with standard normalization. Three-dimensional T1-weighted magnetic resonance images (3D-T1WIs) of 21 healthy subjects were obtained and evaluated for effect of scanner in cortex volumetry. 3D-T1WIs of the 21 subjects were obtained with five MRI systems. Imaging of each subject was performed on each of five different MRI scanners. We used the Voxel-Based Morphometry 8 tool implemented in Statistical Parametric Mapping 8 and WFU PickAtlas software (Talairach brain atlas theory). The following software default settings were used as bilateral region-of-interest labels: ''Frontal Lobe,'' ''Hippocampus,'' ''Occipital Lobe,'' ''Orbital Gyrus,'' ''Parietal Lobe,'' ''Putamen,'' and ''Temporal Lobe.'' Effect of scanner for cortex volumetry using the atlas-based method was reduced with DARTEL normalization compared with standard normalization in Frontal Lobe, Occipital Lobe, Orbital Gyrus, Putamen, and Temporal Lobe; was the same in Hippocampus and Parietal Lobe; and showed no increase with DARTEL normalization for any region of interest (ROI). DARTEL normalization reduces the effect of scanner, which is a major problem in multicenter studies. (orig.)

  14. Diffeomorphic Anatomical Registration Through Exponentiated Lie Algebra provides reduced effect of scanner for cortex volumetry with atlas-based method in healthy subjects.

    Science.gov (United States)

    Goto, Masami; Abe, Osamu; Aoki, Shigeki; Hayashi, Naoto; Miyati, Tosiaki; Takao, Hidemasa; Iwatsubo, Takeshi; Yamashita, Fumio; Matsuda, Hiroshi; Mori, Harushi; Kunimatsu, Akira; Ino, Kenji; Yano, Keiichi; Ohtomo, Kuni

    2013-07-01

    This study aimed to investigate whether the effect of scanner for cortex volumetry with atlas-based method is reduced using Diffeomorphic Anatomical Registration Through Exponentiated Lie Algebra (DARTEL) normalization compared with standard normalization. Three-dimensional T1-weighted magnetic resonance images (3D-T1WIs) of 21 healthy subjects were obtained and evaluated for effect of scanner in cortex volumetry. 3D-T1WIs of the 21 subjects were obtained with five MRI systems. Imaging of each subject was performed on each of five different MRI scanners. We used the Voxel-Based Morphometry 8 tool implemented in Statistical Parametric Mapping 8 and WFU PickAtlas software (Talairach brain atlas theory). The following software default settings were used as bilateral region-of-interest labels: "Frontal Lobe," "Hippocampus," "Occipital Lobe," "Orbital Gyrus," "Parietal Lobe," "Putamen," and "Temporal Lobe." Effect of scanner for cortex volumetry using the atlas-based method was reduced with DARTEL normalization compared with standard normalization in Frontal Lobe, Occipital Lobe, Orbital Gyrus, Putamen, and Temporal Lobe; was the same in Hippocampus and Parietal Lobe; and showed no increase with DARTEL normalization for any region of interest (ROI). DARTEL normalization reduces the effect of scanner, which is a major problem in multicenter studies.

  15. Locally Orderless Registration Code

    DEFF Research Database (Denmark)

    2012-01-01

    This is code for the TPAMI paper "Locally Orderless Registration". The code requires intel threadding building blocks installed and is provided for 64 bit on mac, linux and windows.......This is code for the TPAMI paper "Locally Orderless Registration". The code requires intel threadding building blocks installed and is provided for 64 bit on mac, linux and windows....

  16. Locally orderless registration code

    DEFF Research Database (Denmark)

    2012-01-01

    This is code for the TPAMI paper "Locally Orderless Registration". The code requires intel threadding building blocks installed and is provided for 64 bit on mac, linux and windows.......This is code for the TPAMI paper "Locally Orderless Registration". The code requires intel threadding building blocks installed and is provided for 64 bit on mac, linux and windows....

  17. Evaluation of the Convergence Region of an Automated Registration Method for 3D Laser Scanner Point Clouds.

    Science.gov (United States)

    Bae, Kwang-Ho

    2009-01-01

    Using three dimensional point clouds from both simulated and real datasets from close and terrestrial laser scanners, the rotational and translational convergence regions of Geometric Primitive Iterative Closest Points (GP-ICP) are empirically evaluated. The results demonstrate the GP-ICP has a larger rotational convergence region than the existing methods, e.g., the Iterative Closest Point (ICP).

  18. Tensor scale-based image registration

    Science.gov (United States)

    Saha, Punam K.; Zhang, Hui; Udupa, Jayaram K.; Gee, James C.

    2003-05-01

    Tangible solutions to image registration are paramount in longitudinal as well as multi-modal medical imaging studies. In this paper, we introduce tensor scale - a recently developed local morphometric parameter - in rigid image registration. A tensor scale-based registration method incorporates local structure size, orientation and anisotropy into the matching criterion, and therefore, allows efficient multi-modal image registration and holds potential to overcome the effects of intensity inhomogeneity in MRI. Two classes of two-dimensional image registration methods are proposed - (1) that computes angular shift between two images by correlating their tensor scale orientation histogram, and (2) that registers two images by maximizing the similarity of tensor scale features. Results of applications of the proposed methods on proton density and T2-weighted MR brain images of (1) the same slice of the same subject, and (2) different slices of the same subject are presented. The basic superiority of tensor scale-based registration over intensity-based registration is that it may allow the use of local Gestalts formed by the intensity patterns over the image instead of simply considering intensities as isolated events at the pixel level. This would be helpful in dealing with the effects of intensity inhomogeneity and noise in MRI.

  19. A novel automated method for doing registration and 3D reconstruction from multi-modal RGB/IR image sequences

    Science.gov (United States)

    Kirby, Richard; Whitaker, Ross

    2016-09-01

    In recent years, the use of multi-modal camera rigs consisting of an RGB sensor and an infrared (IR) sensor have become increasingly popular for use in surveillance and robotics applications. The advantages of using multi-modal camera rigs include improved foreground/background segmentation, wider range of lighting conditions under which the system works, and richer information (e.g. visible light and heat signature) for target identification. However, the traditional computer vision method of mapping pairs of images using pixel intensities or image features is often not possible with an RGB/IR image pair. We introduce a novel method to overcome the lack of common features in RGB/IR image pairs by using a variational methods optimization algorithm to map the optical flow fields computed from different wavelength images. This results in the alignment of the flow fields, which in turn produce correspondences similar to those found in a stereo RGB/RGB camera rig using pixel intensities or image features. In addition to aligning the different wavelength images, these correspondences are used to generate dense disparity and depth maps. We obtain accuracies similar to other multi-modal image alignment methodologies as long as the scene contains sufficient depth variations, although a direct comparison is not possible because of the lack of standard image sets from moving multi-modal camera rigs. We test our method on synthetic optical flow fields and on real image sequences that we created with a multi-modal binocular stereo RGB/IR camera rig. We determine our method's accuracy by comparing against a ground truth.

  20. Progressive refinement for robust image registration

    Institute of Scientific and Technical Information of China (English)

    Li Song; Yuanhua Zhou; Jun Zhou

    2005-01-01

    @@ A new image registration algorithm with robust cost function and progressive refinement estimation is developed on the basis of direct method (DM). The robustness lies in M-estimation to avert larger local noise and outliers.

  1. Image Registration for Targeted MRI-guided Transperineal Prostate Biopsy

    Science.gov (United States)

    Fedorov, Andriy; Tuncali, Kemal; Fennessy, Fiona M.; Tokuda, Junichi; Hata, Nobuhiko; Wells, William M.; Kikinis, Ron; Tempany, Clare M.

    2012-01-01

    Purpose To develop and evaluate image registration methodology for automated re-identification of tumor-suspicious foci from pre-procedural MR exams during MR-guided transperineal prostate core biopsy. Materials and Methods A hierarchical approach for automated registration between planning and intra-procedural T2-weighted prostate MRI was developed and evaluated on the images acquired during 10 consecutive MR-guided biopsies. Registration accuracy was quantified at image-based landmarks and by evaluating spatial overlap for the manually segmented prostate and sub-structures. Registration reliability was evaluated by simulating initial mis-registration and analyzing the convergence behavior. Registration precision was characterized at the planned biopsy targets. Results The total computation time was compatible with a clinical setting, being at most 2 minutes. Deformable registration led to a significant improvement in spatial overlap of the prostate and peripheral zone contours compared to both rigid and affine registration. Average in-slice landmark registration error was 1.3±0.5 mm. Experiments simulating initial mis-registration resulted in an estimated average capture range of 6 mm and an average in-slice registration precision of ±0.3 mm. Conclusion Our registration approach requires minimum user interaction and is compatible with the time constraints of our interventional clinical workflow. The initial evaluation shows acceptable accuracy, reliability and consistency of the method. PMID:22645031

  2. An Improved Optical Flow Method for Image Registration with Large-scale Movements%一种应用于图像配准中大尺度位移估计的改进光流法

    Institute of Scientific and Technical Information of China (English)

    熊静旖; 罗予频; 唐光荣

    2008-01-01

    In this paper, an improved optical flow method for image registration is proposed. It is novel in the way that it improves the optical flow method with an initial motion estimator: extended phase correlation technique (EPCT), using merits of the latter to compensate deficiencies of the former. In a more detailed manner, it can be said that the optical flow method can reach the sub-pixel accuracy and calculate complex distortion patterns like chirping and tilting but is weak with large-scale movements. Because EPCT covers measurements of large translations and rotations with pixel level accuracy and is efficient in the calculating load, it can be treated as a good initial motion estimator for optical flow method. Tests have proved that this improved method will significantly enhance the registration performance, especially, for images with large-scale movements and robust against random noises.

  3. Information from the Registration Service

    CERN Multimedia

    GS Department

    2011-01-01

    Please note that the Registration Service (Bldg 55-1st floor) will be exceptionally open during the annual end of year closure from 10:00 to 12:00 on the following days: 22, 23, 26, 27,28, 29 et 30 December 2011 and 2,3, et 4 January 2012. All the activities related to the Registration Service will be operational: registration for contractors’ personnel; registrations for professional visits; access cards; car stickers; biometric registration. The Registration Service

  4. A Multistage Approach for Image Registration.

    Science.gov (United States)

    Bowen, Francis; Hu, Jianghai; Du, Eliza Yingzi

    2016-09-01

    Successful image registration is an important step for object recognition, target detection, remote sensing, multimodal content fusion, scene blending, and disaster assessment and management. The geometric and photometric variations between images adversely affect the ability for an algorithm to estimate the transformation parameters that relate the two images. Local deformations, lighting conditions, object obstructions, and perspective differences all contribute to the challenges faced by traditional registration techniques. In this paper, a novel multistage registration approach is proposed that is resilient to view point differences, image content variations, and lighting conditions. Robust registration is realized through the utilization of a novel region descriptor which couples with the spatial and texture characteristics of invariant feature points. The proposed region descriptor is exploited in a multistage approach. A multistage process allows the utilization of the graph-based descriptor in many scenarios thus allowing the algorithm to be applied to a broader set of images. Each successive stage of the registration technique is evaluated through an effective similarity metric which determines subsequent action. The registration of aerial and street view images from pre- and post-disaster provide strong evidence that the proposed method estimates more accurate global transformation parameters than traditional feature-based methods. Experimental results show the robustness and accuracy of the proposed multistage image registration methodology.

  5. Skull registration for prone patient position using tracked ultrasound

    Science.gov (United States)

    Underwood, Grace; Ungi, Tamas; Baum, Zachary; Lasso, Andras; Kronreif, Gernot; Fichtinger, Gabor

    2017-03-01

    PURPOSE: Tracked navigation has become prevalent in neurosurgery. Problems with registration of a patient and a preoperative image arise when the patient is in a prone position. Surfaces accessible to optical tracking on the back of the head are unreliable for registration. We investigated the accuracy of surface-based registration using points accessible through tracked ultrasound. Using ultrasound allows access to bone surfaces that are not available through optical tracking. Tracked ultrasound could eliminate the need to work (i) under the table for registration and (ii) adjust the tracker between surgery and registration. In addition, tracked ultrasound could provide a non-invasive method in comparison to an alternative method of registration involving screw implantation. METHODS: A phantom study was performed to test the feasibility of tracked ultrasound for registration. An initial registration was performed to partially align the pre-operative computer tomography data and skull phantom. The initial registration was performed by an anatomical landmark registration. Surface points accessible by tracked ultrasound were collected and used to perform an Iterative Closest Point Algorithm. RESULTS: When the surface registration was compared to a ground truth landmark registration, the average TRE was found to be 1.6+/-0.1mm and the average distance of points off the skull surface was 0.6+/-0.1mm. CONCLUSION: The use of tracked ultrasound is feasible for registration of patients in prone position and eliminates the need to perform registration under the table. The translational component of error found was minimal. Therefore, the amount of TRE in registration is due to a rotational component of error.

  6. Impact of policy initiatives on civil registration system in Haryana

    Directory of Open Access Journals (Sweden)

    Pravin Kumar Singh

    2012-01-01

    Full Text Available Background: Despite the existence of Registration of Birth and Death Act (1969, Civil Registration System (CRS in India registered only 68.3% of the births and 63.2% of the deaths. Hence, National Population Policy (2000 emphasized the need to improve registration of vital events. In 2005, Haryana initiated policy changes to enhance registration of vital events. We evaluated the impact of these policy changes on CRS in 2009. Materials and Methods: Records and reports of CRS were reviewed. On the basis of the birth and deaths reported by the Sample Registration System, the proportion of births and deaths registered by CRS were estimated using the projected population from 2001 Census. Results: Before 2005, Police Stations were the registration centers in rural Haryana. On 1 st January 2005, the birth and death registration was made the responsibility of Primary Health Centers (PHCs. Medical Officers at PHCs were designated as Registrar and Pharmacists as Sub-Registrar of Births and Deaths. Auxiliary Nurse Midwife and Anganwadi Workers facilitated the registration. Till 2004, the registration of births was stagnant at the level of 70% for several years, which increased to 95% by 2009. Similarly registration of death events increased from 73.5% to 92.1%. Conclusion: Haryana state is still to achieve complete registration of births and deaths, but certainly shift of registration from police to health department has strengthened the CRS.

  7. Mean Shift Registration Algorithm for Dissimilar Sensors

    Institute of Scientific and Technical Information of China (English)

    QI Yong-qing; JING Zhong-liang; HU Shi-qiang; ZHAO Hai-tao

    2009-01-01

    The mean shift registration (MSR) algorithm is proposed to accurately estimate the biases for multiple dissimilar sensors. The new algorithm is a batch optimization procedure. The maximum likelihood estimator is used to estimate the target states, and then the mean shift algorithm is implemented to estimate the sensor biases. Monte Carlo simulations show that the MSR algorithm has significant improvement in performance with reducing the standard deviation and mean of sensor biased estimation error compared with the maximum likelihood registration algorithm. The quantitative analysis and the qualitative analysis show that the MSR algorithm has less computation than the maximum likelihood registration method.

  8. A Target Location Method for UAV Based on Image Registration%基于图像匹配的无人机目标定位方法

    Institute of Scientific and Technical Information of China (English)

    胡海洋; 李海林

    2012-01-01

    利用无人机的侦察图像对目标进行精确定位的过程中,针对无人机图像与基准图像不可避免地存在尺度变化、旋转变化和光照变化,提出了一种改进SIFT的图像匹配方法。在特征点匹配时,采用简单的准欧式距离作为相似度量准则,并按照DoG空间结构由粗至精进行匹配。实验结果表明,该方法可以实现图像之间的精确匹配,对噪声、光照变化和局部场景变化具有较强的鲁棒性和实时性,为无人机目标定位提供了一种可行和有效的手段。%Aiming at there are variations of scale,rotation and illumination between unmanned aerial vehicles(UAV) images and reference images in the process of target location,an image registration method based on improved SIFT algorithm is proposed.In the feature point matching,the quasi-Euclidean distance instead of Europe is as the similarity measure of feature descriptors to improve the SIFT feature matching efficiency,and it matches feature points according to a coarse-to-fine DoG structure.Experimental results show that the presented method is robust under noises,illumination variations and local scene changes.Hence,the method can be used in target location for UAV.

  9. Performance evaluation of an automatic anatomy segmentation algorithm on repeat or four-dimensional CT images using a deformable image registration method

    Science.gov (United States)

    Wang, He; Garden, Adam S.; Zhang, Lifei; Wei, Xiong; Ahamad, Anesa; Kuban, Deborah A.; Komaki, Ritsuko; O’Daniel, Jennifer; Zhang, Yongbin; Mohan, Radhe; Dong, Lei

    2008-01-01

    Purpose Auto-propagation of anatomical region-of-interests (ROIs) from the planning CT to daily CT is an essential step in image-guided adaptive radiotherapy. The goal of this study was to quantitatively evaluate the performance of the algorithm in typical clinical applications. Method and Materials We previously adopted an image intensity-based deformable registration algorithm to find the correspondence between two images. In this study, the ROIs delineated on the planning CT image were mapped onto daily CT or four-dimentional (4D) CT images using the same transformation. Post-processing methods, such as boundary smoothing and modification, were used to enhance the robustness of the algorithm. Auto-propagated contours for eight head-and-neck patients with a total of 100 repeat CTs, one prostate patient with 24 repeat CTs, and nine lung cancer patients with a total of 90 4D-CT images were evaluated against physician-drawn contours and physician-modified deformed contours using the volume-overlap-index (VOI) and mean absolute surface-to-surface distance (ASSD). Results The deformed contours were reasonably well matched with daily anatomy on repeat CT images. The VOI and mean ASSD were 83% and 1.3 mm when compared to the independently drawn contours. A better agreement (greater than 97% and less than 0.4 mm) was achieved if the physician was only asked to correct the deformed contours. The algorithm was robust in the presence of random noise in the image. Conclusion The deformable algorithm may be an effective method to propagate the planning ROIs to subsequent CT images of changed anatomy, although a final review by physicians is highly recommended. PMID:18722272

  10. Optic disc boundary segmentation from diffeomorphic demons registration of monocular fundus image sequences versus 3D visualization of stereo fundus image pairs for automated early stage glaucoma assessment

    Science.gov (United States)

    Gatti, Vijay; Hill, Jason; Mitra, Sunanda; Nutter, Brian

    2014-03-01

    Despite the current availability in resource-rich regions of advanced technologies in scanning and 3-D imaging in current ophthalmology practice, world-wide screening tests for early detection and progression of glaucoma still consist of a variety of simple tools, including fundus image-based parameters such as CDR (cup to disc diameter ratio) and CAR (cup to disc area ratio), especially in resource -poor regions. Reliable automated computation of the relevant parameters from fundus image sequences requires robust non-rigid registration and segmentation techniques. Recent research work demonstrated that proper non-rigid registration of multi-view monocular fundus image sequences could result in acceptable segmentation of cup boundaries for automated computation of CAR and CDR. This research work introduces a composite diffeomorphic demons registration algorithm for segmentation of cup boundaries from a sequence of monocular images and compares the resulting CAR and CDR values with those computed manually by experts and from 3-D visualization of stereo pairs. Our preliminary results show that the automated computation of CDR and CAR from composite diffeomorphic segmentation of monocular image sequences yield values comparable with those from the other two techniques and thus may provide global healthcare with a cost-effective yet accurate tool for management of glaucoma in its early stage.

  11. A New Extended Projection-Based Image Registration Algorithm

    Institute of Scientific and Technical Information of China (English)

    CHENHuafu; YAODezhong

    2005-01-01

    In the presence of fixed -pattern noise, the projection-based image registration technique is effective but its implementation is only confined to translation registration. Presented in this paper is an extended projectionbased image registration technique in which, by rearranging the projections of images, the image registration is implemented in two steps: rotation and translation, to accomplish two-dimensional (2-D) image registration. Thisapproach transforms the general 2-D optimization procedure into an 1-D projection optimization, thus considerably reducing the amount of computation. The validity ofthe new method is testified by simulation experiment.

  12. All Phase Channel Research Information Management System Data Fast Registration Method%全相位通道科研信息管理系统数据速配准方法

    Institute of Scientific and Technical Information of China (English)

    安海涛

    2015-01-01

    对科研信息管理系统的数据进行快速配准,提高信息管理系统的数据调度和数据融合效率.传统的数据配准算法采用循环堆栈云计算方法,算法对高阶次幂的数据信息矢量配准精度不好.提出一种基于全相位通道特征匹配的科研信息管理系统数据快速配准方法.构建科研信息管理系统的数据调度和配准模型,进行信息特征提取和分类,采用全相位通道滤波设计,实现对科研信息管理系统数据的数据滤波和融合,提高了数据配准的精度.仿真结果表明,采用该算法通过全相位通道滤波设计,有效滤除干扰数据,提高了科研信息管理系统的数据快速配准能力,抗干扰性能较强.%Fast registration data to the scientific research information management system, improve the information manage-ment system of the data scheduling and data fusion efficiency. Traditional data registration algorithm using circular stack cloud computing method and algorithm of Takahashi Ji data information of vector registration accuracy. We propose a fast registration data management information system of scientific research, all phase method based on channel characteristics. Construction of scientific research management information system of data scheduling and the registration model, feature ex-traction and classification, the design of all phase filter channel, realize to the scientific research information management system data, data filtering and fusion and improve the data registration accuracy. Simulation results show that the design of all phase filter channel, effectively filter out interference data and improve the scientific research information management system of the fast registration ability, strong anti-interference performance using the algorithm.

  13. Improved Multiview Cloud Data Registration Method%改进的多视图点云数据配准方法

    Institute of Scientific and Technical Information of China (English)

    牛丹华; 刘桂华; 雷清云; 牛振启

    2012-01-01

    Because of there are large quantity of points cloud data need to match, so if use the traditional Iterative Closest Point (ICP) algorithm,each points cloud data should be traversed one time, that will waste much time and the false match rate is high . In order to obtain the faster speed of the registration, Canny edge detection operator can be used to preprocess the data firstly to simplify the pretreatment of points cloud data, then use K - D tree to search points cloud data, last match the points cloud with ICP algorithm . The experimental results prove that the method is flexible, practical, simplify pretreatment points cloud; and it can be a good solution to solve the problem of slow matching with the traditional ICP method. So it will be well to meet the requirement of engineering.%传统最近点迭代(ICP)算法在进行点云数据配准时,由于待配准的点集数据量很大,每个点云都要遍历一遍,所以时效性不高而且误匹配率大.针对此问题,提出先用Canny边缘检测算子对点云数据进行预处理,以此简化预处理点云的数据量,然后用K-D树搜索数据,最后再用ICP算法进行点云配准,以此来达到加快配准速度.实验证明,该方法灵活实用,简化了待匹配的点云集,能很好的解决传统最近点迭代算法中匹配慢的问题,可以很好的满足工程需要.

  14. Pesticide Registration Information System

    Data.gov (United States)

    U.S. Environmental Protection Agency — PRISM provides an integrated, web portal for all pesticide related data, communications, registrations and transactions for OPP and its stakeholders, partners and...

  15. Visitor Registration System

    Data.gov (United States)

    US Agency for International Development — Visitor Registration System (VRS) streamlines visitor check-in and check-out process for expediting visitors into USAID. The system captures visitor information...

  16. Antenna Structure Registrate

    Data.gov (United States)

    Department of Homeland Security — This file is an extract of the Antenna Structure Registrate (ASR). The ASR consists of antenna structures that are more than 60.96 meters (200 feet) in height or...

  17. Size variation and collapse of emphysema holes at inspiration and expiration CT scan: evaluation with modified length scale method and image co-registration

    Directory of Open Access Journals (Sweden)

    Oh SY

    2017-07-01

    Full Text Available Sang Young Oh,1,* Minho Lee,1,* Joon Beom Seo,1,* Namkug Kim,1,2,* Sang Min Lee,1 Jae Seung Lee,3 Yeon Mok Oh3 1Department of Radiology, 2Department of Convergence Medicine, 3Department of Pulmonology, University of Ulsan College of Medicine, Asan Medical Center, Seoul, Republic of Korea *These authors contributed equally to this work Abstract: A novel approach of size-based emphysema clustering has been developed, and the size variation and collapse of holes in emphysema clusters are evaluated at inspiratory and expiratory computed tomography (CT. Thirty patients were visually evaluated for the size-based emphysema clustering technique and a total of 72 patients were evaluated for analyzing collapse of the emphysema hole in this study. A new approach for the size differentiation of emphysema holes was developed using the length scale, Gaussian low-pass filtering, and iteration approach. Then, the volumetric CT results of the emphysema patients were analyzed using the new method, and deformable registration was carried out between inspiratory and expiratory CT. Blind visual evaluations of EI by two readers had significant correlations with the classification using the size-based emphysema clustering method (r-values of reader 1: 0.186, 0.890, 0.915, and 0.941; reader 2: 0.540, 0.667, 0.919, and 0.942. The results of collapse of emphysema holes using deformable registration were compared with the pulmonary function test (PFT parameters using the Pearson’s correlation test. The mean extents of low-attenuation area (LAA, E1 (<1.5 mm, E2 (<7 mm, E3 (<15 mm, and E4 (≥15 mm were 25.9%, 3.0%, 11.4%, 7.6%, and 3.9%, respectively, at the inspiratory CT, and 15.3%, 1.4%, 6.9%, 4.3%, and 2.6%, respectively at the expiratory CT. The extents of LAA, E2, E3, and E4 were found to be significantly correlated with the PFT ­parameters (r=−0.53, −0.43, −0.48, and −0.25, with forced expiratory volume in 1 second (FEV1; −0.81, −0.62, −0.75, and

  18. Scaling registration of multiview range scans via motion averaging

    Science.gov (United States)

    Zhu, Jihua; Zhu, Li; Jiang, Zutao; Li, Zhongyu; Li, Chen; Zhang, Fan

    2016-07-01

    Three-dimensional modeling of scene or object requires registration of multiple range scans, which are obtained by range sensor from different viewpoints. An approach is proposed for scaling registration of multiview range scans via motion averaging. First, it presents a method to estimate overlap percentages of all scan pairs involved in multiview registration. Then, a variant of iterative closest point algorithm is presented to calculate relative motions (scaling transformations) for these scan pairs, which contain high overlap percentages. Subsequently, the proposed motion averaging algorithm can transform these relative motions into global motions of multiview registration. In addition, it also introduces the parallel computation to increase the efficiency of multiview registration. Furthermore, it presents the error criterion for accuracy evaluation of multiview registration result, which can make it easy to compare results of different multiview registration approaches. Experimental results carried out with public available datasets demonstrate its superiority over related approaches.

  19. A fast method for image registration and seamless mosaicking of UAV%一种快速的无人机影像无缝拼接方法

    Institute of Scientific and Technical Information of China (English)

    王勃; 龚志辉; 顾广杰; 靳克强

    2012-01-01

    Since the traditional mosaicking of low attitude unmanned aerial vehicle ( UAV) images takes highly computational cost and low geometric precision, a fast method for image registration and seamless mosaicking was proposed in the paper. First, original images were downsampled, then the SURF algorithm was used to extract point features, and image matching was implemented. Second , initial homography matrix between adjacent images was computed by RANSAC method, then refined by Levenberg-Marquardt method, and the final absolute homography matrix was determined by sparse bundle adjustment At last, the absolute homography matrix was transformed to the original image by down-sampling homographic relations and image mosaic was done. TThe experimental results showed that this mosaic method performed fast and could solve the problem of misregistration well.%本文针对传统的低空无人机影像拼接处理速度慢和几何精度低的问题,提出了一种快速的无人机影像无缝拼接方法:对输入的原始影像按一定尺度进行降采样,在降采样的影像上进行SURF特征提取和匹配,利用RANSAC方法估计初始的相对单应矩阵,然后用Levenberg-Marquardt方法精化单应矩阵,计算出初始的绝对单应矩阵后利用稀疏光束法平差估计出精确的单应矩阵,通过降采样影像与原始影像的单应关系传递单应矩阵到原始影像级,最后进行影像合成,形成整体拼接图.实验结果表明该方法可以有效地提高拼接速度,解决拼接错位问题.

  20. 2D/3D图像配准中的相似性测度和优化算法%Comparison of similarity measurement and optimization methods in 2 D/3 D image registration

    Institute of Scientific and Technical Information of China (English)

    张冉; 王雷; 夏威; 高欣

    2014-01-01

    在手术引导治疗中,2D/3D图像配准能辅助医生准确定位病人病灶,而准确的配准涉及相似性测度和优化算法等众多方面。为了研究相似性测度和优化算法对2D/3D图像刚性配准的影响,本文结合6种相似性测度和4种优化方法在配准“金标准”数据上进行了2D/3D图像配准实验,并从配准成功率、平均迭代次数和平均配准时间三个方面对配准结果进行了对比研究。实验结果表明,以模式强度为相似性测度,用Powell方法进行优化搜索是最佳配准组合。并且,在不改变相似性测度条件下,Powell方法是所用优化方法中配准效果最好的优化方法。%In surgical guide treatment,2D/3D medical image registration can provide the precise position of patient for surgeon.Accurate registration involves many aspects,such as similarity measurements and optimization methods.In or-der to investigate the influence of similarity measurements and optimization methods on 2D/3D image registration,a comparison of six similarity measurements in combination with four optimization methods is performed using the public and available porcine skull phantom datasets from Medical University Vienna.Comparison is performed for the regis-tration results based on success rate,the number of iterations and execution time.The results show that the most accu-racy registration is obtained by pattern intensity combined with Powell.Furthermore,the best 2D/3D registration re-sults are obtained by Powell search strategy with fixed similarity measurement.

  1. Efficient Variational Approaches for Deformable Registration of Images

    Directory of Open Access Journals (Sweden)

    Mehmet Ali Akinlar

    2012-01-01

    Full Text Available Dirichlet, anisotropic, and Huber regularization terms are presented for efficient registration of deformable images. Image registration, an ill-posed optimization problem, is solved using a gradient-descent-based method and some fundamental theorems in calculus of variations. Euler-Lagrange equations with homogeneous Neumann boundary conditions are obtained. These equations are discretized by multigrid and finite difference numerical techniques. The method is applied to the registration of brain MR images of size 65×65. Computational results indicate that the presented method is quite fast and efficient in the registration of deformable medical images.

  2. Intensity-Based Registration for Lung Motion Estimation

    Science.gov (United States)

    Cao, Kunlin; Ding, Kai; Amelon, Ryan E.; Du, Kaifang; Reinhardt, Joseph M.; Raghavan, Madhavan L.; Christensen, Gary E.

    Image registration plays an important role within pulmonary image analysis. The task of registration is to find the spatial mapping that brings two images into alignment. Registration algorithms designed for matching 4D lung scans or two 3D scans acquired at different inflation levels can catch the temporal changes in position and shape of the region of interest. Accurate registration is critical to post-analysis of lung mechanics and motion estimation. In this chapter, we discuss lung-specific adaptations of intensity-based registration methods for 3D/4D lung images and review approaches for assessing registration accuracy. Then we introduce methods for estimating tissue motion and studying lung mechanics. Finally, we discuss methods for assessing and quantifying specific volume change, specific ventilation, strain/ stretch information and lobar sliding.

  3. Real-time automatic registration in optical surgical navigation

    Science.gov (United States)

    Lin, Qinyong; Yang, Rongqian; Cai, Ken; Si, Xuan; Chen, Xiuwen; Wu, Xiaoming

    2016-05-01

    An image-guided surgical navigation system requires the improvement of the patient-to-image registration time to enhance the convenience of the registration procedure. A critical step in achieving this aim is performing a fully automatic patient-to-image registration. This study reports on a design of custom fiducial markers and the performance of a real-time automatic patient-to-image registration method using these markers on the basis of an optical tracking system for rigid anatomy. The custom fiducial markers are designed to be automatically localized in both patient and image spaces. An automatic localization method is performed by registering a point cloud sampled from the three dimensional (3D) pedestal model surface of a fiducial marker to each pedestal of fiducial markers searched in image space. A head phantom is constructed to estimate the performance of the real-time automatic registration method under four fiducial configurations. The head phantom experimental results demonstrate that the real-time automatic registration method is more convenient, rapid, and accurate than the manual method. The time required for each registration is approximately 0.1 s. The automatic localization method precisely localizes the fiducial markers in image space. The averaged target registration error for the four configurations is approximately 0.7 mm. The automatic registration performance is independent of the positions relative to the tracking system and the movement of the patient during the operation.

  4. Wear test of 4-unit posterior resin bonded fixed partial dentures with non-rigid connector%一端为非刚性连接体的后牙四单位金属翼板粘结桥的抗疲劳实验

    Institute of Scientific and Technical Information of China (English)

    姜慧; 谭京; 王新知

    2012-01-01

    目的:评价带有非刚性连接体与刚性连接体后牙四单位金属翼板粘结桥在模拟口腔功能状态下抗疲劳寿命的差别.方法:选择新鲜完整的离体人第一前磨牙和第二磨牙作为基牙包埋于自凝树脂中,模拟第二前磨牙和第一磨牙的连续缺失,制作10个模型试块,随机均分为两组,实验组在第一前磨牙的远中设计栓体栓道式非刚性连接体,在第二磨牙的近中设计刚性连接体;对照组制作双端刚性连接的四单位金属翼板粘结桥,将试块置于冷热循环机械载荷咀嚼模拟疲劳试验机上进行加载,记录粘结桥发生破坏时的循环加载次数.结果:实验组与对照组初次粘结后发生破坏时的平均循环加载次数分别为(134.34±8.17)万次和(92.58±19.73)万次,经过独立样本t检验(双侧,α =0.05),差异具有统计学意义(P<0.05),即一端带有非刚性连接体的后牙四单位金属翼板粘结桥比双端均为刚性连接的后牙四单位金属翼板粘结桥的抗疲劳寿命长.结论:在体外模拟使用一端为非刚性连接体的长跨度金属翼板粘接桥的寿命要长于两端均为刚性连接体的传统粘接桥,结果需临床进一步验证.%Objective: The aim of this study was to test the difference of fatigue longevity between the 4-unit posterior resin-bonded fixed partial dentures (RBFPD)with non-rigid connector and rigid connector, a wear test to stimulate masticatary function was used. Methods; Extracted intact human teeth were used to prepare specimens, a first premolar and a second molar as the abutment teeth with a space equivalent to a second premolar and a first molar. Ten specimens were seperated into two groups randomly. The control group was prepared to receive conventional RBFPDs; in the test group a non-rigid connector was used on the distal side of the first premolar. The specimens were put on the thermocycling and mechanical loading (TCML) chewing simulator until the

  5. Statutory Management Requirements on "Animal Identification and Registration" (Act A7, Act A8: monitoring methods for compliance and related costs in four Italian farms

    Directory of Open Access Journals (Sweden)

    Marisanna Speroni

    2015-11-01

    Full Text Available The European and national laws concerning the identification and registration of livestock are meant to make possible their traceability and facilitate food safety and animal health, especially in case of a disease outbreak; such rules have also become prerequisites that farmers must meet to obtain single farm payments under the common agricultural policy. Failure to comply with these obligations entails the reduction or exclusion from direct payments. Act A7, reports the obligations imposed by the EC Regulation 1760/2000 establishing a system for the identification and registration of bovine animals and regarding the labelling of beef and beef products; Act A8, report the obligations established by the EC Reg. 21/2004 establishing a system for the identification and registration of sheep and goats. The project MO.NA.CO. monitored the application of rules for identification and registration of cattle, sheep and goats and their costs. The system of identification and registration of dairy cows resulted well organized with a good level of coordination between the involved actors in both farms. The activities necessary for compliance with rules of identification and registration of cattle are distributed throughout the year, but vary from day to day. The average total cost for annual obligations amounted to € 533.34 year-1 while the average cost for individual fulfilment in the monitoring period amounted to € 4.10. Even in the case of sheep and goats, the monitoring showed a good cooperation between farms and technicians. However, some difficulties were detected, mainly due to the size of the rumen boluses and the limited effectiveness of the ear tags. The operators suggested using smaller rumen boluses and tattoo instead of ear tags; they also suggest to extend the period within which the animals have to be labelled from the current 6 months to 9 months. The cost of compliance amounted to € 5.27 head-1 for sheep and € 4.90 head-1 for

  6. 一种基于快速傅里叶变换的分区域图像配准方法%An Image Registration Method Based on Subregional Fast Fourier Transformation

    Institute of Scientific and Technical Information of China (English)

    胡晓彤; 杨威

    2014-01-01

    In order to improve the speed and precision of image registration, a method of image registration based on subre-gional fast Fourier transformation was proposed. A small area was selected in the image instead of the whole area, and then the ratio between the images and the rotation change was got based on the property of log-polar coordinate transformation and Fourier transformation, and the phase correlation technique (energy spectra) was used to determine the image transla-tion. Using those registration parameters, the global registration can be done. The method can improve the processing speed because of using a small area instead the whole image.%为提高图像配准的速度,提出了一种基于快速傅里叶变换的分区域图像配准方法。在图像中选取一块小区域代替整体区域,根据对数-极坐标变换、傅里叶变换的特性确定图像间的比例和旋转变化,利用傅里叶的相位相关技术确定图像间的平移关系,从而求出图像的配准参数,最后利用这个配准参数对待配准图像进行全局配准。此方法改进了利用全图求取配准参数的过程,利用小区域变换得到配准参数,减少了运算量,提高了运算速度。

  7. Fast Registration of Cardiac Perfusion MRI

    DEFF Research Database (Denmark)

    Stegmann, Mikkel Bille; Larsson, Henrik B. W.

    2003-01-01

    This abstract presents a novel method for registration of cardiac perfusion MRI sequences. By performing complex analyses of variance and clustering in an annotated training set off-line, our method provides real-time segmentation in an on-line setting. This renders the method feasible for live...

  8. Registration strategies for multi-modal whole-body MRI mosaicing.

    Science.gov (United States)

    Ceranka, Jakub; Polfliet, Mathias; Lecouvet, Frédéric; Michoux, Nicolas; de Mey, Johan; Vandemeulebroucke, Jef

    2017-06-21

    To test and compare different registration approaches for performing whole-body diffusion-weighted (wbDWI) image station mosaicing, and its alignment to corresponding anatomical T1 whole-body image. Four different registration strategies aiming at mosaicing of diffusion-weighted image stations, and their alignment to the corresponding whole-body anatomical image, were proposed and evaluated. These included two-step approaches, where diffusion-weighted stations are first combined in a pairwise (Strategy 1) or groupwise (Strategy 2) manner and later non-rigidly aligned to the anatomical image; a direct pairwise mapping of DWI stations onto the anatomical image (Strategy 3); and simultaneous mosaicing of DWI and alignment to the anatomical image (Strategy 4). Additionally, different images driving the registration were investigated. Experiments were performed for 20 whole-body images of patients with bone metastases. Strategies 1 and 2 showed significant improvement in mosaicing accuracy with respect to the non-registered images (P multi-modal alignment. Magn Reson Med, 2017. © 2017 International Society for Magnetic Resonance in Medicine. © 2017 International Society for Magnetic Resonance in Medicine.

  9. COMPARISON OF VOLUMETRIC REGISTRATION ALGORITHMS FOR TENSOR-BASED MORPHOMETRY

    Science.gov (United States)

    Villalon, Julio; Joshi, Anand A.; Toga, Arthur W.; Thompson, Paul M.

    2015-01-01

    Nonlinear registration of brain MRI scans is often used to quantify morphological differences associated with disease or genetic factors. Recently, surface-guided fully 3D volumetric registrations have been developed that combine intensity-guided volume registrations with cortical surface constraints. In this paper, we compare one such algorithm to two popular high-dimensional volumetric registration methods: large-deformation viscous fluid registration, formulated in a Riemannian framework, and the diffeomorphic “Demons” algorithm. We performed an objective morphometric comparison, by using a large MRI dataset from 340 young adult twin subjects to examine 3D patterns of correlations in anatomical volumes. Surface-constrained volume registration gave greater effect sizes for detecting morphometric associations near the cortex, while the other two approaches gave greater effects sizes subcortically. These findings suggest novel ways to combine the advantages of multiple methods in the future. PMID:26925198

  10. Registration Based Retrieval using Texture Measures

    Directory of Open Access Journals (Sweden)

    Swarnambiga AYYACHAMY

    2015-09-01

    Full Text Available The aim of the study presented in this manuscript was to develop and analyze registration based retrieval of medical image using texture measures. Three main methods are implemented in this work. The first method includes Affine transformation, Demons and Affine with B-spline. The second method implemented is medical image retrieval system using content based medical image retrieval. GLCM, LBP and GLCM with LBP are used for texture based retrieval. Shape based retrieval is processed using canny edge with the Otsu method. From registration based retrieval, Affine with B-Spline performs well and produces best result by increasing the retrieval rate and the next better performances are given by Demons and Affine registration. The results showed that the best results for registration based retrieval are given by Affine with B-Spline registration based retrieval using GLCM+LBP with (100/50. Based on more relevant retrieved images, Brain (100/50 and Knee (100/50 observed to have more relevant retrieved images.

  11. Phase Correlation Based Iris Image Registration Model

    Institute of Scientific and Technical Information of China (English)

    Jun-Zhou Huang; Tie-Niu Tan; Li Ma; Yun-Hong Wang

    2005-01-01

    Iris recognition is one of the most reliable personal identification methods. In iris recognition systems, image registration is an important component. Accurately registering iris images leads to higher recognition rate for an iris recognition system. This paper proposes a phase correlation based method for iris image registration with sub-pixel accuracy.Compared with existing methods, it is insensitive to image intensity and can compensate to a certain extent the non-linear iris deformation caused by pupil movement. Experimental results show that the proposed algorithm has an encouraging performance.

  12. Compressive elastic moduli and polishing performance of non-rigid core/shell structured PS/SiO{sub 2} composite abrasives evaluated by AFM

    Energy Technology Data Exchange (ETDEWEB)

    Chen, Ailian [College of Mechanical and Energy Engineering, Changzhou University, Changzhou, Jiangsu 213016 (China); Mu, Weibin [School of Materials Science and Engineering, Changzhou University, Changzhou, Jiangsu 213164 (China); Chen, Yang, E-mail: cy.jpu@126.com [School of Materials Science and Engineering, Changzhou University, Changzhou, Jiangsu 213164 (China)

    2014-01-30

    The core/shell structured polystyrene (PS)/SiO{sub 2} composite microspheres with different silica shell morphology were synthesized by a modified Stöber method. As confirmed by transmission electron microscopy (TEM), the rough discontinuous shell consisted of separate SiO{sub 2} nanoparticles for composite-A, while the smooth continuous one was composed of amorphous silica network for composite-B. Atomic force microscopy (AFM) was employed to probe the compressive Young's moduli (E) and chemical mechanical polishing (CMP) performances of the as-prepared PS/SiO{sub 2} composite microspheres. On the basis of the Hertzian contact mechanics, the calculated E values of the PS microspheres, composite-A and composite-B were 2.9 ± 0.4, 5.1 ± 1.2 and 6.0 ± 1.2 GPa, respectively. Compared to traditional abrasives, thermally grown silicon oxide wafers after polished by the core/shell PS/SiO{sub 2} composite abrasives obtained a lower root mean square roughness and a higher material removal rate value. In addition, there is an obvious effect of shell morphology of the composites on oxide CMP performance and structural stability during polishing process. This approach would provide a basis for understanding the actual role of organic/inorganic core/shell composite abrasives in the material removal process of CMP.

  13. Research on Registration Methods Based on SRUKF between 3D Radar and 2D Radar%基于SRUKF的3D雷达与2D雷达的误差配准方法

    Institute of Scientific and Technical Information of China (English)

    刘德浩; 王国宏; 陈垒; 关成斌

    2012-01-01

    系统误差配准技术是雷达组网数据处理系统中必不可少的基础和关键技术,其目的是准确估计及消除组网雷达的系统误差.采用ECEF坐标系作为公共参考坐标系,推导了使用3D雷达配准2D雷达的3种方法,并采用均方根不敏卡尔曼滤波(SRUKF)对组网雷达系统误差进行实时估计.仿真结果表明,该算法可以有效地实现3D雷达与2D雷达之间距离和方位角的系统误差配准.%Registration is a necessary and prerequisite process for the data fusion in radar networking system to estimate and correct systematic errors accurately. Earth-centered-Earth-fixed (ECEF ) coordinates are taken as the common reference coordinates, three registration methods between 3D radar and 2D radar are deduced. SRUKF (Square Root Unscented Kalman Filter) is used to estimate the systematic errors. The result indicates that the algorithm could fulfill registration of slant and azimuth between 3D and 2D radars effectively.

  14. 3D/4D ultrasound registration of bone

    CERN Document Server

    Schers, Jonathan; Daanen, Vincent; Fouard, Céline; Plaskos, Christopher; Kilian, Pascal

    2008-01-01

    This paper presents a method to reduce the invasiveness of Computer Assisted Orthopaedic Surgery (CAOS) using ultrasound. In this goal, we need to develop a method for 3D/4D ultrasound registration. The premilinary results of this study suggest that the development of a robust and ``realtime'' 3D/4D ultrasound registration is feasible.

  15. SU-E-J-225: Quantitative Evaluation of Rigid and Non-Rigid Motion of Liver Tumors Using Stereo Imaging During SBRT

    Energy Technology Data Exchange (ETDEWEB)

    Xu, Q; Hanna, G; Kubicek, G; Asbell, S; Chen, Y; LaCouture, T [MD Anderson Cancer Center at Cooper, Mt Laurel, NJ (United States); Grimm, J [Holy Redeemer, Meadowbrook, PA (United States); Pahlajani, N [First Radiation and Oncology Group, Jacksonville, FL (United States); Fan, J [Virtua Fox Chase Cancer Center, Philadelphia, PA (United States)

    2014-06-01

    Purpose: To quantitatively evaluate rigid and nonrigid motion of liver tumors based on fiducial tracking in 3D by stereo imaging during CyberKnife SBRT. Methods: Twenty-five liver patients previously treated with three-fractions of SBRT were retrospectively recruited in this study. During treatment, the 3D locations of fiducials were reported by the CyberKnife system after two orthogonal kV X-ray images were taken and further validated by geometry derivations. A total of 5004 pairs of X-ray images acquired during the course of treatment for all the patients, were analyzed. For rigid motion, the rotational angles and translational shifts by aligning 3D fiducial groups in different image pairs after least-square fitting were reported. For nonrigid motion, the relative interfractional tumor shape variations were reported and correlated to the sum of inter-fiducial distances. The individual fiducial displacements were also reported after rigid corrections and without angle corrections. Results: The relative tumor volume variation indicated by the inter-fiducial distances demonstrated an increasing trend in the second (101.6±3.4%) and third fraction (101.2±5.6%) among most patients. The cause could be possibly due to radiation-induced edema. For all the patients, the translational shift was 8.1±5.7 mm, with shifts in LR, AP and SI were 2.1±2.4 mm, 2.8±2.9 mm and 6.7±5.1 mm, respectively. The greatest translation shift occurred in SI, mainly due the breathing motion of diaphragm The rotational angles were 1.1±1.7°, 1.9±2.6° and 1.6±2.2°, in roll, pitch, and yaw, respectively. The 3D fiducial displacement with rigid corrections were 0.2±0.2 mm and increased to 0.6±0.3 mm without rotational corrections. Conclusion: The fiducial locations in 3D can be precisely reconstructed from CyberKnife stereo imaging system during treatment. The fiducials provide close estimation of both rigid and nonrigid motion of .liver tumors. The reported data could be further

  16. Mass Preserving Registration for lung CT

    DEFF Research Database (Denmark)

    Gorbunova, Vladlena; Lo, Pechin Chien Pau; Loeve, Martin

    2009-01-01

    intensities due to differences in inspiration level, we propose to adjust the intensity of lung tissue according to the local expansion or compression. An image registration method without intensity adjustment is compared to the proposed method. Both approaches are evaluated on a set of 10 pairs of expiration...... and inspiration CT scans of children with cystic fibrosis lung disease. The proposed method with mass preserving adjustment results in significantly better alignment of the vessel trees. Analysis of local volume change for regions with trapped air compared to normally ventilated regions revealed larger...... differences between these regions in the case of mass preserving image registration, indicating that mass preserving registration is better at capturing localized differences in lung deformation....

  17. 应用改进迭代最近点方法的点云数据配准%Point cloud registration based on improved iterative closest point method

    Institute of Scientific and Technical Information of China (English)

    王欣; 张明明; 于晓; 章明朝

    2012-01-01

    An improved Iterative Closest Point (1CP) method based on the boundary feature points of the point cloud is proposed to improve the efficiency and accuracy of point cloud data registration in reverse engineering fields. First, an initial registration method based on the boundary feature points of point cloud is proposed. The method partitions the minimum bounding box of point cloud with grids in a 3D space, and sets up the space grid model. Then, it applies boundary seed grid recognition and growth algorithms to extract feature points from the boundary of point cloud, and works out the transformation matrix using Singular Value Decomposition (SVD) method to get the results of initial registration. Furthermore, an improved ICP accurate registration method is presented. It weighs the corresponding points of the point cloud, eliminates the points whose weight is larger than the threshold, and introduces M-estimation to the objective function to eliminate the abnormal points. Finally, the point cloud is accurately registered by the improved ICP method on the basis of initial registration. Compared with original ICP method, the improved ICP method increases the efficiency by more than 70 percent and reduces the error to 0. 02 percent. The experiment results indicate that the method proposed in this paper improves the efficiency and accuracy of point cloud registration greatly.%提出了基于点云边界特征点的改进迭代最近点(ICP)方法来提高逆向工程中点云数据配准的效率和精度.首先,提出了基于点云边界特征点的初始配准方法.对点云最小包围盒进行三维空间划分,建立空间网格模型;运用边界种子网格识别及生长算法,从点云边界提取特征点,运用奇异值矩阵分解法(SVD)求出点云的变换矩阵,得到初始配准结果.然后,提出了改进的ICP精确配准方法.对点云对应点赋予权重,剔除权重大于阈值的点,通过对目标函数引入M-估计(M-estimation),剔除

  18. A 3D Facial Expression Tracking Method Using Piecewise Deformations

    Directory of Open Access Journals (Sweden)

    Jing Chi

    2013-02-01

    Full Text Available We present a new fast method for 3D facial expression tracking based on piecewise non-rigid deformations. Our method takes as input a video-rate sequence of face meshes that record the shape and time-varying expressions of a human face, and deforms a source mesh to match each input mesh to output a new mesh sequence with the same connectivity that reflects the facial shape and expressional variations. In mesh matching, we automatically segment the source mesh and estimate a non-rigid transformation for each segment to approximate the input mesh closely. Piecewise non-rigid transformation significantly reduces computational complexity and improves tracking speed because it greatly decreases the unknowns to be estimated. Our method can also achieve desired tracking accuracy because segmentation can be adjusted automatically and flexibly to approximate arbitrary deformations on the input mesh. Experiments demonstrate the efficiency of our method.

  19. The hidden KPI registration accuracy.

    Science.gov (United States)

    Shorrosh, Paul

    2011-09-01

    Determining the registration accuracy rate is fundamental to improving revenue cycle key performance indicators. A registration quality assurance (QA) process allows errors to be corrected before bills are sent and helps registrars learn from their mistakes. Tools are available to help patient access staff who perform registration QA manually.

  20. A framework for shape matching in deformable image registration

    DEFF Research Database (Denmark)

    Noe, Karsten Østergaard; Mosegaard, Jesper; Tanderup, Kari

    2008-01-01

    Many existing image registration methods have difficulties in accurately describing significant rotation and bending of entities (e.g. organs) between two datasets. A common problem in this case is to ensure that the resulting registration is physically plausible, i.e. that the registration...... describes the actual bending/rotation occurring rather than just introducing expansion in some areas and shrinkage in others. In this work we developed a general framework for deformable image registration of two 3D datasets that alleviates this problem. To ensure that only physically feasible and plausible...

  1. Hierarchical Non-linear Image Registration Integrating Deformable Segmentation

    Institute of Scientific and Technical Information of China (English)

    RAN Xin; QI Fei-hu

    2005-01-01

    A hierarchical non-linear method for image registration was presented, which integrates image segmentation and registration under a variational framework. An improved deformable model is used to simultaneously segment and register feature from multiple images. The objects in the image pair are segmented by evolving a single contour and meanwhile the parameters of affine registration transformation are found out. After that, a contour-constrained elastic registration is applied to register the images correctly. The experimental results indicate that the proposed approach is effective to segment and register medical images.

  2. DTI Image Registration under Probabilistic Fiber Bundles Tractography Learning

    Science.gov (United States)

    Lei, Tao; Fan, Yangyu; Zhang, Xiuwei

    2016-01-01

    Diffusion Tensor Imaging (DTI) image registration is an essential step for diffusion tensor image analysis. Most of the fiber bundle based registration algorithms use deterministic fiber tracking technique to get the white matter fiber bundles, which will be affected by the noise and volume. In order to overcome the above problem, we proposed a Diffusion Tensor Imaging image registration method under probabilistic fiber bundles tractography learning. Probabilistic tractography technique can more reasonably trace to the structure of the nerve fibers. The residual error estimation step in active sample selection learning is improved by modifying the residual error model using finite sample set. The calculated deformation field is then registered on the DTI images. The results of our proposed registration method are compared with 6 state-of-the-art DTI image registration methods under visualization and 3 quantitative evaluation standards. The experimental results show that our proposed method has a good comprehensive performance.

  3. Serial volumetric registration of pulmonary CT studies

    Science.gov (United States)

    Silva, José Silvestre; Silva, Augusto; Sousa Santos, Beatriz

    2008-03-01

    Detailed morphological analysis of pulmonary structures and tissue, provided by modern CT scanners, is of utmost importance as in the case of oncological applications both for diagnosis, treatment, and follow-up. In this case, a patient may go through several tomographic studies throughout a period of time originating volumetric sets of image data that must be appropriately registered in order to track suspicious radiological findings. The structures or regions of interest may change their position or shape in CT exams acquired at different moments, due to postural, physiologic or pathologic changes, so, the exams should be registered before any follow-up information can be extracted. Postural mismatching throughout time is practically impossible to avoid being particularly evident when imaging is performed at the limiting spatial resolution. In this paper, we propose a method for intra-patient registration of pulmonary CT studies, to assist in the management of the oncological pathology. Our method takes advantage of prior segmentation work. In the first step, the pulmonary segmentation is performed where trachea and main bronchi are identified. Then, the registration method proceeds with a longitudinal alignment based on morphological features of the lungs, such as the position of the carina, the pulmonary areas, the centers of mass and the pulmonary trans-axial principal axis. The final step corresponds to the trans-axial registration of the corresponding pulmonary masked regions. This is accomplished by a pairwise sectional registration process driven by an iterative search of the affine transformation parameters leading to optimal similarity metrics. Results with several cases of intra-patient, intra-modality registration, up to 7 time points, show that this method provides accurate registration which is needed for quantitative tracking of lesions and the development of image fusion strategies that may effectively assist the follow-up process.

  4. Locally orderless registration

    DEFF Research Database (Denmark)

    Darkner, Sune; Sporring, Jon

    2013-01-01

    This paper presents a unifying approach for calculating a wide range of popular, but seemingly very different, similarity measures. Our domain is the registration of n-dimensional images sampled on a regular grid, and our approach is well suited for gradient-based optimization algorithms. Our...... approach is based on local intensity histograms and built upon the technique of Locally Orderless Images. Histograms by Locally Orderless Images are well posed and offer explicit control over the 3 inherent and unavoidable scales: the spatial resolution, intensity levels, and spatial extent of local......, and we compare these variations both theoretically, and empirically. Finally, using our algorithm, we explain the empirically observed differences between two popular joint density estimation techniques used in registration: Parzen Windows and Generalized Partial Volume....

  5. Data organization and storage model of the realty uniform registration system

    Science.gov (United States)

    Shen, Chenhua; Liu, Yu; Wu, Xiaobin

    2007-06-01

    Based on the Real Right Law, this article analyzes the entity objects of the realty uniform registration, and establishes the model of the logical relations among the entities, from which the dada relation model is proposed, and from which the data relation model of the realty uniform registration is proposed, and is compared with the current land registration data model and the real estate data model. It is proved that this uniform registration data model has not only maintained the close links with the land registration data model and the real estate registration data model, but also met the need of the uniform registration by comparing with the existing land registration data model and the real estate data model. In the end, this article discusses the method of data storage for the uniform registration of the land and the real estate to improve the efficiency of storage and access by adopting split technology to store the alteration data logically.

  6. TIMER: tensor image morphing for elastic registration.

    Science.gov (United States)

    Yap, Pew-Thian; Wu, Guorong; Zhu, Hongtu; Lin, Weili; Shen, Dinggang

    2009-08-15

    We propose a novel diffusion tensor imaging (DTI) registration algorithm, called Tensor Image Morphing for Elastic Registration (TIMER), which leverages the hierarchical guidance of regional distributions and local boundaries, both extracted directly from the tensors. Currently available DTI registration methods generally extract tensor scalar features from each tensor to construct scalar maps. Subsequently, regional integration and other operations such as edge detection are performed to extract more features to guide the registration. However, there are two major limitations with these approaches. First, the computed regional features might not reflect the actual regional tensor distributions. Second, by the same token, gradient maps calculated from the tensor-derived scalar feature maps might not represent the actual tissue tensor boundaries. To overcome these limitations, we propose a new approach which extracts regional and edge information directly from a tensor neighborhood. Regional tensor distribution information, such as mean and variance, is computed in a multiscale fashion directly from the tensors by taking into account the voxel neighborhood of different sizes, and hence capturing tensor information at different scales, which in turn can be employed to hierarchically guide the registration. Such multiscale scheme can help alleviate the problem of local minimum and is also more robust to noise since one can better determine the statistical properties of each voxel by taking into account the properties of its surrounding. Also incorporated in our method is edge information extracted directly from the tensors, which is crucial to facilitate registration of tissue boundaries. Experiments involving real subjects, simulated subjects, fiber tracking, and atrophy detection indicate that TIMER performs better than the other methods (Yang et al., 2008; Zhang et al., 2006).

  7. Learning-Based Approaches to Deformable Image Registration

    NARCIS (Netherlands)

    Munzing, S.E.A.

    2014-01-01

    Accurate registration of images is an important and often crucial step in many areas of image processing and analysis, yet it is only used in a small percentage of possible applications. Automated registration methods are not considered to be sufficiently robust to handle complex deformations and lo

  8. Block-to-Point Fine Registration in Terrestrial Laser Scanning

    Directory of Open Access Journals (Sweden)

    Jin Wang

    2013-12-01

    Full Text Available Fine registration of point clouds plays an important role in data analysis in Terrestrial Laser Scanning (TLS. This work proposes a block-to-point fine registration approach to correct the errors of point clouds from TLS and of geodetic networks observed using total stations. Based on a reference coordinate system, the block-to-point estimation is performed to obtain representative points. Then, fine registration with a six-parameter transformation is performed with the help of an Iterative Closest Point (ICP method. For comparisons, fine registration with a seven-parameter transformation is introduced by applying a Singular Value Decomposition (SVD algorithm. The proposed method not only corrects the registration errors between a geodetic network and the scans, but also considers the errors among the scans. The proposed method was tested on real TLS data of a dam surface, and the results showed that distance discrepancies of estimated representative points between scans were reduced by approximately 60%.

  9. Temporal mammogram image registration using optimized curvilinear coordinates.

    Science.gov (United States)

    Abdel-Nasser, Mohamed; Moreno, Antonio; Puig, Domenec

    2016-04-01

    Registration of mammograms plays an important role in breast cancer computer-aided diagnosis systems. Radiologists usually compare mammogram images in order to detect abnormalities. The comparison of mammograms requires a registration between them. A temporal mammogram registration method is proposed in this paper. It is based on the curvilinear coordinates, which are utilized to cope both with global and local deformations in the breast area. Temporal mammogram pairs are used to validate the proposed method. After registration, the similarity between the mammograms is maximized, and the distance between manually defined landmarks is decreased. In addition, a thorough comparison with the state-of-the-art mammogram registration methods is performed to show its effectiveness.

  10. Multimodality imaging combination in small animal via point-based registration

    Science.gov (United States)

    Yang, C. C.; Wu, T. H.; Lin, M. H.; Huang, Y. H.; Guo, W. Y.; Chen, C. L.; Wang, T. C.; Yin, W. H.; Lee, J. S.

    2006-12-01

    We present a system of image co-registration in small animal study. Marker-based registration is chosen because of its considerable advantage that the fiducial feature is independent of imaging modality. We also experimented with different scanning protocols and different fiducial marker sizes to improve registration accuracy. Co-registration was conducted using rat phantom fixed by stereotactic frame. Overall, the co-registration accuracy was in sub-millimeter level and close to intrinsic system error. Therefore, we conclude that the system is an accurate co-registration method to be used in small animal studies.

  11. Mass preserving image registration for lung CT

    DEFF Research Database (Denmark)

    Gorbunova, Vladlena; Sporring, Jon; Lo, Pechin;

    2012-01-01

    on four groups of data: 44 pairs of longitudinal inspiratory chest CT scans with small difference in lung volume; 44 pairs of longitudinal inspiratory chest CT scans with large difference in lung volume; 16 pairs of expiratory and inspiratory CT scans; and 5 pairs of images extracted at end exhale and end...... inhale phases of 4D-CT images. Registration errors, measured as the average distance between vessel tree centerlines in the matched images, are significantly lower for the proposed mass preserving image registration method in the second, third and fourth group, while there is no statistically significant......This paper presents a mass preserving image registration algorithm for lung CT images. To account for the local change in lung tissue intensity during the breathing cycle, a tissue appearance model based on the principle of preservation of total lung mass is proposed. This model is incorporated...

  12. Onboard Image Registration from Invariant Features

    Science.gov (United States)

    Wang, Yi; Ng, Justin; Garay, Michael J.; Burl, Michael C

    2008-01-01

    This paper describes a feature-based image registration technique that is potentially well-suited for onboard deployment. The overall goal is to provide a fast, robust method for dynamically combining observations from multiple platforms into sensors webs that respond quickly to short-lived events and provide rich observations of objects that evolve in space and time. The approach, which has enjoyed considerable success in mainstream computer vision applications, uses invariant SIFT descriptors extracted at image interest points together with the RANSAC algorithm to robustly estimate transformation parameters that relate one image to another. Experimental results for two satellite image registration tasks are presented: (1) automatic registration of images from the MODIS instrument on Terra to the MODIS instrument on Aqua and (2) automatic stabilization of a multi-day sequence of GOES-West images collected during the October 2007 Southern California wildfires.

  13. SU-E-J-122: The CBCT Dose Calculation Using a Patient Specific CBCT Number to Mass Density Conversion Curve Based On a Novel Image Registration and Organ Mapping Method in Head-And-Neck Radiation Therapy

    Energy Technology Data Exchange (ETDEWEB)

    Zhou, J [University of Maryland School of Medicine, Bel Air, MD (United States); Lasio, G; Chen, S; Zhang, B; Langen, K; Prado, K; D’Souza, W [University of Maryland School of Medicine, Baltimore, MD (United States); Yi, B [Univ. of Maryland School Of Medicine, Baltimore, MD (United States); Huang, J [University of Texas at Arlington, Arlington, TX (United States)

    2015-06-15

    Purpose: To develop a CBCT HU correction method using a patient specific HU to mass density conversion curve based on a novel image registration and organ mapping method for head-and-neck radiation therapy. Methods: There are three steps to generate a patient specific CBCT HU to mass density conversion curve. First, we developed a novel robust image registration method based on sparseness analysis to register the planning CT (PCT) and the CBCT. Second, a novel organ mapping method was developed to transfer the organs at risk (OAR) contours from the PCT to the CBCT and corresponding mean HU values of each OAR were measured in both the PCT and CBCT volumes. Third, a set of PCT and CBCT HU to mass density conversion curves were created based on the mean HU values of OARs and the corresponding mass density of the OAR in the PCT. Then, we compared our proposed conversion curve with the traditional Catphan phantom based CBCT HU to mass density calibration curve. Both curves were input into the treatment planning system (TPS) for dose calculation. Last, the PTV and OAR doses, DVH and dose distributions of CBCT plans are compared to the original treatment plan. Results: One head-and-neck cases which contained a pair of PCT and CBCT was used. The dose differences between the PCT and CBCT plans using the proposed method are −1.33% for the mean PTV, 0.06% for PTV D95%, and −0.56% for the left neck. The dose differences between plans of PCT and CBCT corrected using the CATPhan based method are −4.39% for mean PTV, 4.07% for PTV D95%, and −2.01% for the left neck. Conclusion: The proposed CBCT HU correction method achieves better agreement with the original treatment plan compared to the traditional CATPhan based calibration method.

  14. Robust augmented reality registration method for localization of solid organs' tumors using CT-derived virtual biomechanical model and fluorescent fiducials.

    Science.gov (United States)

    Kong, Seong-Ho; Haouchine, Nazim; Soares, Renato; Klymchenko, Andrey; Andreiuk, Bohdan; Marques, Bruno; Shabat, Galyna; Piechaud, Thierry; Diana, Michele; Cotin, Stéphane; Marescaux, Jacques

    2017-07-01

    Augmented reality (AR) is the fusion of computer-generated and real-time images. AR can be used in surgery as a navigation tool, by creating a patient-specific virtual model through 3D software manipulation of DICOM imaging (e.g., CT scan). The virtual model can be superimposed to real-time images enabling transparency visualization of internal anatomy and accurate localization of tumors. However, the 3D model is rigid and does not take into account inner structures' deformations. We present a concept of automated AR registration, while the organs undergo deformation during surgical manipulation, based on finite element modeling (FEM) coupled with optical imaging of fluorescent surface fiducials. Two 10 × 1 mm wires (pseudo-tumors) and six 10 × 0.9 mm fluorescent fiducials were placed in ex vivo porcine kidneys (n = 10). Biomechanical FEM-based models were generated from CT scan. Kidneys were deformed and the shape changes were identified by tracking the fiducials, using a near-infrared optical system. The changes were registered automatically with the virtual model, which was deformed accordingly. Accuracy of prediction of pseudo-tumors' location was evaluated with a CT scan in the deformed status (ground truth). In vivo: fluorescent fiducials were inserted under ultrasound guidance in the kidney of one pig, followed by a CT scan. The FEM-based virtual model was superimposed on laparoscopic images by automatic registration of the fiducials. Biomechanical models were successfully generated and accurately superimposed on optical images. The mean measured distance between the estimated tumor by biomechanical propagation and the scanned tumor (ground truth) was 0.84 ± 0.42 mm. All fiducials were successfully placed in in vivo kidney and well visualized in near-infrared mode enabling accurate automatic registration of the virtual model on the laparoscopic images. Our preliminary experiments showed the potential of a biomechanical model with fluorescent

  15. Pre-registration education: learning communities.

    Science.gov (United States)

    Thomas, Gail; Crooke, Lois; Curtis, Peter

    Changes in nurse education in the UK and the introduction of a new pre-registration nursing programme have led to developments in education methods. This article describes the creation of learning communities at Thames Valley University as a means of adapting to the new curriculum.

  16. A multi-scale registration of urban aerial image with airborne lidar data

    Science.gov (United States)

    Huang, Shuo; Chen, Siying; Zhang, Yinchao; Guo, Pan; Chen, He

    2015-11-01

    This paper presented a multi-scale progressive registration method of airborne LiDAR data with aerial image. The cores of the proposed method lie in the coarse registration with road networks and the fine registration method using regularized building corners. During the two-stage registration, the exterior orientation parameters (EOP) are continually refined. By validation of the actual flight data of Dunhuang, the experimental result shows that the proposed method can obtain accurate results with low-precision initial EOP, also improve the automatic degree of registration.

  17. Informing pre-registration nurse education: a proposal outline on the value, methods and ethical considerations of involving children in doctoral research.

    Science.gov (United States)

    Clarke, Sonya

    2014-12-01

    As pre-registration nurse education programmes evolve within the United Kingdom, it is imperative to involve patient/client groups within the research process, as the outcome may invoke a change in the care delivery of the registered nurse (RN). This paper focuses upon children and how children might hypothetically contribute to informing a generic nursing programme in their capacity as a rights holder and expert in their own lives. Even though their contribution and value has been debated around their capacity as research advisor, research participant and co researcher, this paper explores how the child's view of their experience of hospital and of the good nurse could be best captured. Research is a powerful vehicle that can enable their voice to equally inform UK nurse educators and policy makers so that the child's health care needs are effectively met in hospital by RN's who complete a generic programme.

  18. General approach to error prediction in point registration

    Science.gov (United States)

    Danilchenko, Andrei; Fitzpatrick, J. Michael

    2010-02-01

    A method for the first-order analysis of the point registration problem is presented and validated. The method is a unified approach to the problem that allows for inhomogeneous and anisotropic fiducial localization error (FLE) and arbitrary weighting in the registration algorithm. Cross-covariance matrices are derived both for target registration error (TRE) and for weighted fiducial registration error (FRE). Furthermore, it is shown that for ideal weighting, in which the weighting matrix for each fiducial equals the inverse of the square root of the cross covariance of the two-space FLE for that fiducial, fluctuations of FRE and TRE are independent. These results are validated by comparison with previously published expressions for special cases and by simulation and shown to be correct. Furthermore, simulations for randomly generated fiducial positions and FLEs are presented that show that correlation is negligible (correlation coefficient FRE, are unreliable estimators of registration accuracy, i.e., TRE, and should be avoided.

  19. 基于岸线配准的海岛礁遥感影像几何纠正方法%Precision Rectification Method for Island Satellite Image Based on Registration of Coastline

    Institute of Scientific and Technical Information of China (English)

    张靓; 孟婵媛; 李军; 辛宪会; 叶秋果; 李海滨; 滕惠忠

    2011-01-01

    The precision rectification of satellite image of remote island is hard to perform for lack of reliable ground control points. In this paper, we present a promising geometric rectification method based on registration of coastline. Supposing the coastline of island is relative stable. Firstly, we retrieve the coastline from the satellite image based on spectrum analysis. Then, we retrieve the coastline from the chart based on the distinctive color of land. Finally, we fulfill the precision rectification by registration of two coastlines. Experiments show that the method is reasonable and results are satisfying.%由于缺少可靠的控制点,很难对遥远海岛进行几何精校正.在假定海岛岸线相对稳定的情况下,提出一种基于海岸线配准的几何校正方法.首先,基于波谱分析从卫星影像提取海岸线;接着,根据海图上陆地特定的颜色提取海岸线;最后,通过将两种岸线进行配准实现了几何精校正.试验表明这个方法可行,校正结果也令人满意.

  20. A surface-matching technique for robot-assisted registration.

    Science.gov (United States)

    Glozman, D; Shoham, M; Fischer, A

    2001-01-01

    Successful implementation of robot-assisted surgery (RAS) requires coherent integration of spatial image data with sensing and actuating devices, each having its own coordinate system. Hence, accurate estimation of the geometric relationships between relevant reference frames, known as registration, is a crucial procedure in all RAS applications. The purpose of this paper is to present a new registration scheme, along with the results of an experimental evaluation of a robot-assisted registration method for RAS applications in orthopedics. The accuracy of the proposed registration is appropriate for specified orthopedic surgical applications such as Total Knee Replacement. The registration method is based on a surface-matching algorithm that does not require marker implants, thereby reducing surgical invasiveness. Points on the bone surface are sampled by the robot, which in turn directs the surgical tool. This technique eliminates additional coordinate transformations to an external device (such as a digitizer), resulting in increased surgical accuracy. The registration technique was tested on an RSPR six-degrees-of-freedom parallel robot specifically designed for medical applications. A six-axis force sensor attached to the robot's moving platform enables fast and accurate acquisition of positions and surface normal directions at sampled points. Sampling with a robot probe was shown to be accurate, fast, and easy to perform. The whole procedure takes about 2 min, with the robot performing most of the registration procedures, leaving the surgeon's hands free. Robotic registration was shown to provide a flawless link between preoperative planning and robotic assistance during surgery.

  1. Registration Summer Camp 2016

    CERN Multimedia

    2016-01-01

    Reminder: registration for the CERN Staff Association Summer Camp is now open for children from 4 to 6 years old.   More information on the website: http://nurseryschool.web.cern.ch/. The summer camp is open to all children. The proposed cost is 480.-CHF/week, lunch included. The camp will be open weeks 27, 28, 29 and 30, from 8:30 a.m. to 5:30 p.m. For further questions, you are welcome to contact us by email at Summer.Camp@cern.ch. CERN Staff Association

  2. elastix: a toolbox for intensity-based medical image registration.

    Science.gov (United States)

    Klein, Stefan; Staring, Marius; Murphy, Keelin; Viergever, Max A; Pluim, Josien P W

    2010-01-01

    Medical image registration is an important task in medical image processing. It refers to the process of aligning data sets, possibly from different modalities (e.g., magnetic resonance and computed tomography), different time points (e.g., follow-up scans), and/or different subjects (in case of population studies). A large number of methods for image registration are described in the literature. Unfortunately, there is not one method that works for all applications. We have therefore developed elastix, a publicly available computer program for intensity-based medical image registration. The software consists of a collection of algorithms that are commonly used to solve medical image registration problems. The modular design of elastix allows the user to quickly configure, test, and compare different registration methods for a specific application. The command-line interface enables automated processing of large numbers of data sets, by means of scripting. The usage of elastix for comparing different registration methods is illustrated with three example experiments, in which individual components of the registration method are varied.

  3. Registration accuracy and quality of real-life images.

    Directory of Open Access Journals (Sweden)

    Wei-Yen Hsu

    Full Text Available BACKGROUND: A common registration problem for the application of consumer device is to align all the acquired image sequences into a complete scene. Image alignment requires a registration algorithm that will compensate as much as possible for geometric variability among images. However, images captured views from a real scene usually produce different distortions. Some are derived from the optic characteristics of image sensors, and others are caused by the specific scenes and objects. METHODOLOGY/PRINCIPAL FINDINGS: An image registration algorithm considering the perspective projection is proposed for the application of consumer devices in this study. It exploits a multiresolution wavelet-based method to extract significant features. An analytic differential approach is then proposed to achieve fast convergence of point matching. Finally, the registration accuracy is further refined to obtain subpixel precision by a feature-based modified Levenberg-Marquardt method. Due to its feature-based and nonlinear characteristic, it converges considerably faster than most other methods. In addition, vignette compensation and color difference adjustment are also performed to further improve the quality of registration results. CONCLUSIONS/SIGNIFICANCE: The performance of the proposed method is evaluated by testing the synthetic and real images acquired by a hand-held digital still camera and in comparison with two registration techniques in terms of the squared sum of intensity differences (SSD and correlation coefficient (CC. The results indicate that the proposed method is promising in registration accuracy and quality, which are statistically significantly better than other two approaches.

  4. A statistical framework for inter-group image registration.

    Science.gov (United States)

    Liao, Shu; Wu, Guorong; Shen, Dinggang

    2012-10-01

    Groupwise image registration plays an important role in medical image analysis. The principle of groupwise image registration is to align a given set of images to a hidden template space in an iteratively manner without explicitly selecting any individual image as the template. Although many approaches have been proposed to address the groupwise image registration problem for registering a single group of images, few attentions and efforts have been paid to the registration problem between two or more different groups of images. In this paper, we propose a statistical framework to address the registration problems between two different image groups. The main contributions of this paper lie in the following aspects: (1) In this paper, we demonstrate that directly registering the group mean images estimated from two different image groups is not sufficient to establish the reliable transformation from one image group to the other image group. (2) A novel statistical framework is proposed to extract anatomical features from the white matter, gray matter and cerebrospinal fluid tissue maps of all aligned images as morphological signatures for each voxel. The extracted features provide much richer anatomical information than the voxel intensity of the group mean image, and can be integrated with the multi-channel Demons registration algorithm to perform the registration process. (3) The proposed method has been extensively evaluated on two publicly available brain MRI databases: the LONI LPBA40 and the IXI databases, and it is also compared with a conventional inter-group image registration approach which directly performs deformable registration between the group mean images of two image groups. Experimental results show that the proposed method consistently achieves higher registration accuracy than the method under comparison.

  5. Atlas-Based Prostate Segmentation Using an Hybrid Registration

    CERN Document Server

    Martin, Sébastien; Troccaz, Jocelyne

    2008-01-01

    Purpose: This paper presents the preliminary results of a semi-automatic method for prostate segmentation of Magnetic Resonance Images (MRI) which aims to be incorporated in a navigation system for prostate brachytherapy. Methods: The method is based on the registration of an anatomical atlas computed from a population of 18 MRI exams onto a patient image. An hybrid registration framework which couples an intensity-based registration with a robust point-matching algorithm is used for both atlas building and atlas registration. Results: The method has been validated on the same dataset that the one used to construct the atlas using the "leave-one-out method". Results gives a mean error of 3.39 mm and a standard deviation of 1.95 mm with respect to expert segmentations. Conclusions: We think that this segmentation tool may be a very valuable help to the clinician for routine quantitative image exploitation.

  6. Shrinking of the Cocos and Nazca Plates due to Horizontal Thermal Contraction and Implications for Plate Non-rigidity and the Non-closure of the Pacific-Cocos-Nazca Plate Motion Circuit

    Science.gov (United States)

    Gordon, R. G.; Kreemer, C.

    2015-12-01

    Plate rigidity is the central tenet of plate tectonics. Mounting evidence suggests, however, that significant intraplate deformation occurs in oceanic lithosphere due to horizontal thermal contraction, the rate of which decreases as ≈ 1/age [Kumar & Gordon 2009]. Support for this hypothesis comes from the azimuths of submarine transform faults, which are fit significantly better assuming shrinking plates than by assuming rigid plates [Mishra & Gordon 2015]. Previously we estimated the intraplate velocity field of the Pacific plate accounting for horizontal thermal contraction. The ≈2 mm/yr southeastward motion predicted for the northeastern part of the plate relative to the Pacific-Antarctic Rise may contribute to the non-closure of the Pacific-North America plate motion circuit. In a reference frame in which fix the oldest portion of the Pacific plate, some sites on the plate move up to ≈2 mm/yr [Kreemer & Gordon 2014]. Here we present intraplate velocity fields of the Cocos and Nazca plates and discuss their implications for the non-rigidity of plates and the non-closure of the Pacific-Cocos-Nazca plate circuit, which fails closure by a stunning 14 ±5 mm/yr [DeMets et al. 2010]. If we fix the oldest part of the Cocos plate, intraplate velocities of up to ≈2 mm/yr are estimated, with the fastest motion occurring at the northern end of the plate. If we fix the oldest part of the Nazca plate, displacement rates up to 2 mm/yr are estimated, with the fastest motion occurring in the northeasternmost portion of the plate. In the velocity fields for both plates, the lithosphere adjacent to transform faults along the East Pacific Rise tends to move to the south, which would skew the azimuths of the transform faults clockwise of the values expected for rigid plates, which is the same as the sense of misfit between observed azimuths of transform faults and the azimuths calculated from the MORVEL global set of relative angular velocities [DeMets et al. 2010]. Direct

  7. Structure Damage Analysis of Photoelectric Composite Cable under Impaction by Admiral Anchors on Non-Rigid Bottom%非刚性底质上海军锚对光电复合缆撞击损伤分析

    Institute of Scientific and Technical Information of China (English)

    王力平; 罗晓兰; 高强; 段梦兰; 徐健; 脱浩虎

    2016-01-01

    The ship’s anchor impact is easy to make submarine cable breakage and damage.It is very meaningful to carry out the research on the impact damage of submarine cable structure, which is very important for ensuring the safety of communication,power and production.Aiming at admiral anchor on the non-rigid bottom,a finite element model of drop anchor impacting photo-electric composite cable is created,and the plastic strain and sectional deformation of photoelectric composite cable are analyzed and calculated when admiral anchor dropped the cable.To find the strain and deformation trend of photoelectric composite cable structure of each layer are basic con-sistency,so the damage the internal structure from outer injury can be determined.Meanwhile,the comparative calculation and test results show that the light unit is more likely to suffer extrusion deformation than the electric unit.When the cross-sectional deformation of the photoelectric com-posite cable reaches 9%,the light unit of cable is damaged.%船锚撞击容易使海底电缆断裂、破损,为此,开展海底电缆结构的撞击损伤研究,对保障海底通讯通电生产安全具有非常重要的意义。针对非刚性底及质海军锚,建立落锚冲击光电复合缆的有限元计算模型,通过对落锚冲击时光电复合缆结构的等效塑性应变和截面变形量的计算分析,发现光电缆各层结构的应变和变形趋势基本一致,从而可以从外层铠装的损伤来判断内部结构的损伤情况。计算结果对比试验结果表明,光单元比电单元更容易遭受挤压变形,当光电缆的截面变形量达到9%,电缆中光单元受损。

  8. Two new approaches for image registration based on spatial-temporal relationship

    Institute of Scientific and Technical Information of China (English)

    Deng Zhipeng; Yang Jie; Liu Xiaojun

    2005-01-01

    How to improve the probability of registration and precision of localization is a hard problem, which is desiderated to solve. The two basic approaches (normalized cross-correlation and phase correlation) for image registration are analysed, two improved approaches based on spatial-temporal relationship are presented. This method adds the correlation matrix according to the displacements in x- cirection and y- directions, and the registration pose is searched in the added matrix. The method overcomes the shortcoming that the probability of registration decreasing with area increasing owing to geometric distortion, improves the probability and the robustness of registration.

  9. Registration Delay and Student Performance

    Science.gov (United States)

    Siefken, Jason

    2017-01-01

    Tracking the difference between the time a first-year student is allowed to register for a course and the time he or she does register for a course (a student's registration delay), we notice a negative correlation between registration delay and final grade in a course. The difference between a student who registers within the first two minutes…

  10. 16 CFR 1130.8 - Requirements for Web site registration or alternative e-mail registration.

    Science.gov (United States)

    2010-01-01

    ... registration. (a) Link to registration page. The manufacturer's Web site, or other Web site established for the... web page that goes directly to “Product Registration.” (b) Purpose statement. The registration page... registration page. The Web site registration page shall request only the consumer's name, address,...

  11. Deformable image registration with geometric changes

    Institute of Scientific and Technical Information of China (English)

    Yu LIU; Bo ZHU

    2015-01-01

    Geometric changes present a number of difficulties in deformable image registration. In this paper, we propose a global deformation framework to model geometric changes whilst promoting a smooth transformation between source and target images. To achieve this, we have developed an innovative model which significantly reduces the side effects of geometric changes in image registration, and thus improves the registration accuracy. Our key contribution is the introduction of a sparsity-inducing norm, which is typically L1 norm regularization targeting regions where geometric changes occur. This preserves the smoothness of global transformation by eliminating local transformation under different conditions. Numerical solutions are discussed and analyzed to guarantee the stability and fast convergence of our algorithm. To demonstrate the effectiveness and utility of this method, we evaluate it on both synthetic data and real data from traumatic brain injury (TBI). We show that the transformation estimated from our model is able to reconstruct the target image with lower instances of error than a standard elastic registration model.

  12. Image registration using adaptive polar transform.

    Science.gov (United States)

    Matungka, Rittavee; Zheng, Yuan F; Ewing, Robert L

    2009-10-01

    Image registration is an essential step in many image processing applications that need visual information from multiple images for comparison, integration, or analysis. Recently, researchers have introduced image registration techniques using the log-polar transform (LPT) for its rotation and scale invariant properties. However, it suffers from nonuniform sampling which makes it not suitable for applications in which the registered images are altered or occluded. Inspired by LPT, this paper presents a new registration algorithm that addresses the problems of the conventional LPT while maintaining the robustness to scale and rotation. We introduce a novel adaptive polar transform (APT) technique that evenly and effectively samples the image in the Cartesian coordinates. Combining APT with an innovative projection transform along with a matching mechanism, the proposed method yields less computational load and more accurate registration than that of the conventional LPT. Translation between the registered images is recovered with the new search scheme using Gabor feature extraction to accelerate the localization procedure. Moreover an image comparison scheme is proposed for locating the area where the image pairs differ. Experiments on real images demonstrate the effectiveness and robustness of the proposed approach for registering images that are subjected to occlusion and alteration in addition to scale, rotation, and translation.

  13. Supervised local error estimation for nonlinear image registration using convolutional neural networks

    Science.gov (United States)

    Eppenhof, Koen A. J.; Pluim, Josien P. W.

    2017-02-01

    Error estimation in medical image registration is valuable when validating, comparing, or combining registration methods. To validate a nonlinear image registration method, ideally the registration error should be known for the entire image domain. We propose a supervised method for the estimation of a registration error map for nonlinear image registration. The method is based on a convolutional neural network that estimates the norm of the residual deformation from patches around each pixel in two registered images. This norm is interpreted as the registration error, and is defined for every pixel in the image domain. The network is trained using a set of artificially deformed images. Each training example is a pair of images: the original image, and a random deformation of that image. No manually labeled ground truth error is required. At test time, only the two registered images are required as input. We train and validate the network on registrations in a set of 2D digital subtraction angiography sequences, such that errors up to eight pixels can be estimated. We show that for this range of errors the convolutional network is able to learn the registration error in pairs of 2D registered images at subpixel precision. Finally, we present a proof of principle for the extension to 3D registration problems in chest CTs, showing that the method has the potential to estimate errors in 3D registration problems.

  14. Validation of an image registration and segmentation method to measure stent graft motion on ECG-gated CT using a physical dynamic stent graft model

    Science.gov (United States)

    Koenrades, Maaike A.; Struijs, Ella M.; Klein, Almar; Kuipers, Henny; Geelkerken, Robert H.; Slump, Cornelis H.

    2017-03-01

    The application of endovascular aortic aneurysm repair has expanded over the last decade. However, the long-term performance of stent grafts, in particular durable fixation and sealing to the aortic wall, remains the main concern of this treatment. The sealing and fixation are challenged at every heartbeat due to downward and radial pulsatile forces. Yet knowledge on cardiac-induced dynamics of implanted stent grafts is sparse, as it is not measured in routine clinical follow-up. Such knowledge is particularly relevant to perform fatigue tests, to predict failure in the individual patient and to improve stent graft designs. Using a physical dynamic stent graft model in an anthropomorphic phantom, we have evaluated the performance of our previously proposed segmentation and registration algorithm to detect periodic motion of stent grafts on ECG-gated (3D+t) CT data. Abdominal aortic motion profiles were simulated in two series of Gaussian based patterns with different amplitudes and frequencies. Experiments were performed on a 64-slice CT scanner with a helical scan protocol and retrospective gating. Motion patterns as estimated by our algorithm were compared to motion patterns obtained from optical camera recordings of the physical stent graft model in motion. Absolute errors of the patterns' amplitude were smaller than 0.28 mm. Even the motion pattern with an amplitude of 0.23 mm was measured, although the amplitude of motion was overestimated by the algorithm with 43%. We conclude that the algorithm performs well for measurement of stent graft motion in the mm and sub-mm range. This ultimately is expected to aid in patient-specific risk assessment and improving stent graft designs.

  15. Rapid registration of multimodal images using a reduced number of voxels

    Science.gov (United States)

    Huang, Xishi; Hill, Nicholas A.; Ren, Jing; Peters, Terry M.

    2006-03-01

    Rapid registration of multimodal cardiac images can improve image-guided cardiac surgeries and cardiac disease diagnosis. While mutual information (MI) is arguably the most suitable registration technique, this method is too slow to converge for real time cardiac image registration; moreover, correct registration may not coincide with a global or even local maximum of MI. These limitations become quite evident when registering three-dimensional (3D) ultrasound (US) images and dynamic 3D magnetic resonance (MR) images of the beating heart. To overcome these issues, we present a registration method that uses a reduced number of voxels, while retaining adequate registration accuracy. Prior to registration we preprocess the images such that only the most representative anatomical features are depicted. By selecting samples from preprocessed images, our method dramatically speeds up the registration process, as well as ensuring correct registration. We validated this registration method for registering dynamic US and MR images of the beating heart of a volunteer. Experimental results on in vivo cardiac images demonstrate significant improvements in registration speed without compromising registration accuracy. A second validation study was performed registering US and computed tomography (CT) images of a rib cage phantom. Two similarity metrics, MI and normalized crosscorrelation (NCC) were used to register the image sets. Experimental results on the rib cage phantom indicate that our method can achieve adequate registration accuracy within 10% of the computation time of conventional registration methods. We believe this method has the potential to facilitate intra-operative image fusion for minimally invasive cardio-thoracic surgical navigation.

  16. Automated image registration for FDOPA PET studies

    Science.gov (United States)

    Lin, Kang-Ping; Huang, Sung-Cheng; Yu, Dan-Chu; Melega, William; Barrio, Jorge R.; Phelps, Michael E.

    1996-12-01

    In this study, various image registration methods are investigated for their suitability for registration of L-6-[18F]-fluoro-DOPA (FDOPA) PET images. Five different optimization criteria including sum of absolute difference (SAD), mean square difference (MSD), cross-correlation coefficient (CC), standard deviation of pixel ratio (SDPR), and stochastic sign change (SSC) were implemented and Powell's algorithm was used to optimize the criteria. The optimization criteria were calculated either unidirectionally (i.e. only evaluating the criteria for comparing the resliced image 1 with the original image 2) or bidirectionally (i.e. averaging the criteria for comparing the resliced image 1 with the original image 2 and those for the sliced image 2 with the original image 1). Monkey FDOPA images taken at various known orientations were used to evaluate the accuracy of different methods. A set of human FDOPA dynamic images was used to investigate the ability of the methods for correcting subject movement. It was found that a large improvement in performance resulted when bidirectional rather than unidirectional criteria were used. Overall, the SAD, MSD and SDPR methods were found to be comparable in performance and were suitable for registering FDOPA images. The MSD method gave more adequate results for frame-to-frame image registration for correcting subject movement during a dynamic FDOPA study. The utility of the registration method is further demonstrated by registering FDOPA images in monkeys before and after amphetamine injection to reveal more clearly the changes in spatial distribution of FDOPA due to the drug intervention.

  17. Medium Frequency Electrotherapy Product Registration Inspection Technology Index and its Detection Method%中频电疗产品注册检验技术指标及其检测方法

    Institute of Scientific and Technical Information of China (English)

    王澜; 邢立镛; 苏宁; 谢胜芬

    2016-01-01

    According to the new technical indicators in the State Food and Drug Administration “electrotherapy product registration technical review guidelines”. this paper analyzes and interpretes the new inspection method combined with\\ the existing ones. Some thoughts and discussions are suggested in order to improve the quality of mid-frequency electrotherapy product.%本文就国家食品药品监督管理总局修订的《中频电疗产品注册技术审查指导原则》新增的技术指标进行分析解读,并结合我单位的检测情况对其检测方法进行探讨,提出一些思考和建议,以期对提高中频电疗产品的产品质量有所帮助。

  18. Cardiac motion estimation by using high-dimensional features and K-means clustering method

    Science.gov (United States)

    Oubel, Estanislao; Hero, Alfred O.; Frangi, Alejandro F.

    2006-03-01

    Tagged Magnetic Resonance Imaging (MRI) is currently the reference modality for myocardial motion and strain analysis. Mutual Information (MI) based non rigid registration has proven to be an accurate method to retrieve cardiac motion and overcome many drawbacks present on previous approaches. In a previous work1, we used Wavelet-based Attribute Vectors (WAVs) instead of pixel intensity to measure similarity between frames. Since the curse of dimensionality forbids the use of histograms to estimate MI of high dimensional features, k-Nearest Neighbors Graphs (kNNG) were applied to calculate α-MI. Results showed that cardiac motion estimation was feasible with that approach. In this paper, K-Means clustering method is applied to compute MI from the same set of WAVs. The proposed method was applied to four tagging MRI sequences, and the resulting displacements were compared with respect to manual measurements made by two observers. Results show that more accurate motion estimation is obtained with respect to the use of pixel intensity.

  19. A Novel Technique for Prealignment in Multimodality Medical Image Registration

    Directory of Open Access Journals (Sweden)

    Wu Zhou

    2014-01-01

    Full Text Available Image pair is often aligned initially based on a rigid or affine transformation before a deformable registration method is applied in medical image registration. Inappropriate initial registration may compromise the registration speed or impede the convergence of the optimization algorithm. In this work, a novel technique was proposed for prealignment in both monomodality and multimodality image registration based on statistical correlation of gradient information. A simple and robust algorithm was proposed to determine the rotational differences between two images based on orientation histogram matching accumulated from local orientation of each pixel without any feature extraction. Experimental results showed that it was effective to acquire the orientation angle between two unregistered images with advantages over the existed method based on edge-map in multimodalities. Applying the orientation detection into the registration of CT/MR, T1/T2 MRI, and monomadality images with respect to rigid and nonrigid deformation improved the chances of finding the global optimization of the registration and reduced the search space of optimization.

  20. An auto registration method for fixed type of scanned HPC based on detecting balls%基于探测球的固定式扫描海量点云自动定向方法

    Institute of Scientific and Technical Information of China (English)

    郭敬平

    2015-01-01

    The point cloud data of fixed terrestrial scanning are used for topographic mapping ,of which the data should be transformed from free coordinate system into national coordinate frame .However ,due to the huge quantity of point cloud for single‐station scanning ,the data can not be registered in a visual environment .For the deficiency of existing registration methods for huge point clouds (HPC ) ,an auto method for fixed type of scanned HPC based on detecting balls is put forward .The automatic registration process is implemented by reading point clouds through data association ,searching target‐searching loops , followed by fitting spheres for candidate targets ,extracting corresponding points using distance matching , and calculating the transformation parameters .Experiments demonstrate the effectivity and feasibility of the proposed algorithm .%地面固定式扫描点云首先要将自由坐标系的点云纳入国家坐标系,而单站扫描的点云数据量极大,无法在可视环境下进行拼接。针对现有方法对海量点云拼接的不足,提出一种基于探测球的固定式扫描海量点云自动定向方法,该方法通过数据关联技术读取海量点云、建立标靶搜索环、球拟合确定标靶候选点、全组合距离匹配法确定同名点及坐标转换参数解算等,完成点云的自动定向过程。通过实验验证文中算法的有效性及可行性。

  1. Groupwise registration of MR brain images with tumors

    Science.gov (United States)

    Tang, Zhenyu; Wu, Yihong; Fan, Yong

    2017-09-01

    A novel groupwise image registration framework is developed for registering MR brain images with tumors. Our method iteratively estimates a normal-appearance counterpart for each tumor image to be registered and constructs a directed graph (digraph) of normal-appearance images to guide the groupwise image registration. Particularly, our method maps each tumor image to its normal appearance counterpart by identifying and inpainting brain tumor regions with intensity information estimated using a low-rank plus sparse matrix decomposition based image representation technique. The estimated normal-appearance images are groupwisely registered to a group center image guided by a digraph of images so that the total length of ‘image registration paths’ to be the minimum, and then the original tumor images are warped to the group center image using the resulting deformation fields. We have evaluated our method based on both simulated and real MR brain tumor images. The registration results were evaluated with overlap measures of corresponding brain regions and average entropy of image intensity information, and Wilcoxon signed rank tests were adopted to compare different methods with respect to their regional overlap measures. Compared with a groupwise image registration method that is applied to normal-appearance images estimated using the traditional low-rank plus sparse matrix decomposition based image inpainting, our method achieved higher image registration accuracy with statistical significance (p  =  7.02  ×  10-9).

  2. A prospective comparison between auto-registration and manual registration of real-time ultrasound with MR images for percutaneous ablation or biopsy of hepatic lesions.

    Science.gov (United States)

    Cha, Dong Ik; Lee, Min Woo; Song, Kyoung Doo; Oh, Young-Taek; Jeong, Ja-Yeon; Chang, Jung-Woo; Ryu, Jiwon; Lee, Kyong Joon; Kim, Jaeil; Bang, Won-Chul; Shin, Dong Kuk; Choi, Sung Jin; Koh, Dalkwon; Seo, Bong Koo; Kim, Kyunga

    2017-06-01

    To compare the accuracy and required time for image fusion of real-time ultrasound (US) with pre-procedural magnetic resonance (MR) images between positioning auto-registration and manual registration for percutaneous radiofrequency ablation or biopsy of hepatic lesions. This prospective study was approved by the institutional review board, and all patients gave written informed consent. Twenty-two patients (male/female, n = 18/n = 4; age, 61.0 ± 7.7 years) who were referred for planning US to assess the feasibility of radiofrequency ablation (n = 21) or biopsy (n = 1) for focal hepatic lesions were included. One experienced radiologist performed the two types of image fusion methods in each patient. The performance of auto-registration and manual registration was evaluated. The accuracy of the two methods, based on measuring registration error, and the time required for image fusion for both methods were recorded using in-house software and respectively compared using the Wilcoxon signed rank test. Image fusion was successful in all patients. The registration error was not significantly different between the two methods (auto-registration: median, 3.75 mm; range, 1.0-15.8 mm vs. manual registration: median, 2.95 mm; range, 1.2-12.5 mm, p = 0.242). The time required for image fusion was significantly shorter with auto-registration than with manual registration (median, 28.5 s; range, 18-47 s, vs. median, 36.5 s; range, 14-105 s, p = 0.026). Positioning auto-registration showed promising results compared with manual registration, with similar accuracy and even shorter registration time.

  3. Evaluation of 3 different registration techniques in image-guided bimaxillary surgery.

    Science.gov (United States)

    Sun, Yi; Luebbers, Heinz-Theo; Agbaje, Jimoh Olubanwo; Schepers, Serge; Vrielinck, Luc; Lambrichts, Ivo; Politis, Constantinus

    2013-07-01

    Perioperative navigation is an upcoming tool in orthognathic surgery. This study aimed to access the feasibility of the technique and to evaluate the success rate of 3 different registration methods--facial surface registration, anatomic landmark-based registration, and template-based registration. The BrainLab navigation system (BrainLab AG, Feldkirchen, Germany) was used as an additional precision tool for 85 patients who underwent bimaxillary orthognathic surgery from February 2010 to June 2012. Eighteen cases of facial surface-based registration, 63 cases of anatomic landmark-based registration, and 8 cases of template-based registration were analyzed. The overall success rate of facial surface-based registration was 39%, which was significant lower than template-based (100%, P = 0.013) and anatomic landmark-based registration (95%, P bimaxillary orthognathic surgery has been proved to be feasible. The registration process is the critical point regarding success of intraoperative navigation. Anatomic landmark-based registration is a reliable technique for image-guided bimaxillary surgery. In contrast, facial surface-based registration is highly unreliable.

  4. A method of intra-operative spine fast correction based on 2D/3D registration%一种基于2D/3D配准的脊柱术中校正方法

    Institute of Scientific and Technical Information of China (English)

    曾玲; 余伟巍; 席平

    2011-01-01

    背景:脊柱术前三维影像有助于诊断和治疗,术中患者体位变化将引起脊柱形态改变,致使术前影像不能反映术中实际情况,无法确保手术的顺利实施.目的:利用脊髓手术中影像校正术前脊柱模型形态.方法:实验提出了一种基于2D/3D配准的脊柱术中校正方法,借助数字影像重建技术完成术前X射线图像与CT体数据的2D/3D配准,进一步完成术中、术前X射线图像中独立椎段的特征匹配,利用上述配准结果实现术前脊柱CT模型的术中快速校正.结果与结论:采用附有标记的颈椎标本进行实验,校正后可基本消除术前脊柱模型与术中形态的偏差,其误差可控制在1mm以内,能够满足医学临床要求.%BACKGROUND: The preoperative three-dimensional (3D) diagnosis and treatment. As patient's posture changes, the intra-operative shape of spine is deferent form the preoperative. So the preoperative images can not reflect the intra-operative situation. And doctor can not ensure the smooth implementation of the operation.OBJECTIVE: To correct preoperative spine models using intra-operative image.METHODS: This paper presented an approach based on 2D/3D registration to correct preoperative images during operation. We use digitally reconstructed radiograph (DRR) to register CT to X-ray image. Then complete the feature registrations of all independent vertebra segments between intra-operative and preoperative X-ray images. The results of above registrations are exploited to fast correct the preoperative spine models.RESULTS AND CONCLUSION: Using marked cervical spine specimens for experiment, the deviation of the spine model can be basically eliminated after correction. The error between intra-operative and corrected preoperative spine model is less than 1mm.And clinical requirements can be met.

  5. Aerial Video Image Registration Method Based on Invariant Features and Mapping Restraint%基于不变特征和映射抑制的航拍视频图像配准

    Institute of Scientific and Technical Information of China (English)

    易盟; 郭宝龙

    2012-01-01

    针对航拍视频图像在光学变换和几何变换下特征匹配容易产生误匹配,以及匹配精度不一致等问题,提出一种结合不变特征和映射抑制的航拍视频配准算法.首先,利用Harris检测器在尺度变化下的局部区域内选择出最稳定角点,并利用分区检测方法提取出分布均匀的角点作为待配准点.然后,计算以特征点为中心邻域窗口的描述符,通过比较两幅待配准图像特征点邻域描述符的欧式距离,提取出初始匹配点对.对匹配对点集建立D-三角网图,利用映射抑制方法提取出精确度最高的少数匹配点,并对模型参数进行估计,完成视频帧间的配准.大量实验表明,所提方法对航拍视频图像配准具有较强的适应性且配准精度高.%The Harris detector can produce false corners under common photometric transformations and geometric transformations, and the matching points have different accuracy. This paper presents an aerial video image registration scheme by combining the invariant features and mapping restraint. Firstly, the locally most stable points are selected by the multi-resolution Harris detector, and a subarea detection method is presented to determine the well-distributed corners. The descriptors are established at each point in a circular neighborhood. Then Euclidean distance of the corner descriptors are compared to extract the initial feature point pair. Then the Delaunay triangulation of matching point pairs are computed, and the most "useful" matching points that best satisfy the cross-ratio invariants are presented to estimate the geometry transformation, and the image registration is completed. Experimental results demonstrate that the proposed algorithm can effectively offer a robust and accurate image registration for aerial video images.

  6. INTER-GROUP IMAGE REGISTRATION BY HIERARCHICAL GRAPH SHRINKAGE.

    Science.gov (United States)

    Ying, Shihui; Wu, Guorong; Liao, Shu; Shen, Dinggang

    2013-12-31

    In this paper, we propose a novel inter-group image registration method to register different groups of images (e.g., young and elderly brains) simultaneously. Specifically, we use a hierarchical two-level graph to model the distribution of entire images on the manifold, with intra-graph representing the image distribution in each group and the inter-graph describing the relationship between two groups. Then the procedure of inter-group registration is formulated as a dynamic evolution of graph shrinkage. The advantage of our method is that the topology of entire image distribution is explored to guide the image registration. In this way, each image coordinates with its neighboring images on the manifold to deform towards the population center, by following the deformation pathway simultaneously optimized within the graph. Our proposed method has been also compared with other state-of-the-art inter-group registration methods, where our method achieves better registration results in terms of registration accuracy and robustness.

  7. Robust linear registration of CT images using random regression forests

    Science.gov (United States)

    Konukoglu, Ender; Criminisi, Antonio; Pathak, Sayan; Robertson, Duncan; White, Steve; Haynor, David; Siddiqui, Khan

    2011-03-01

    Global linear registration is a necessary first step for many different tasks in medical image analysis. Comparing longitudinal studies1, cross-modality fusion2, and many other applications depend heavily on the success of the automatic registration. The robustness and efficiency of this step is crucial as it affects all subsequent operations. Most common techniques cast the linear registration problem as the minimization of a global energy function based on the image intensities. Although these algorithms have proved useful, their robustness in fully automated scenarios is still an open question. In fact, the optimization step often gets caught in local minima yielding unsatisfactory results. Recent algorithms constrain the space of registration parameters by exploiting implicit or explicit organ segmentations, thus increasing robustness4,5. In this work we propose a novel robust algorithm for automatic global linear image registration. Our method uses random regression forests to estimate posterior probability distributions for the locations of anatomical structures - represented as axis aligned bounding boxes6. These posterior distributions are later integrated in a global linear registration algorithm. The biggest advantage of our algorithm is that it does not require pre-defined segmentations or regions. Yet it yields robust registration results. We compare the robustness of our algorithm with that of the state of the art Elastix toolbox7. Validation is performed via 1464 pair-wise registrations in a database of very diverse 3D CT images. We show that our method decreases the "failure" rate of the global linear registration from 12.5% (Elastix) to only 1.9%.

  8. Further beyond: registration and overlay control enhancements for optical masks

    Science.gov (United States)

    Gorhad, Kujan; Cohen, Avi; Avizemer, Dan; Dmitriev, Vladimir; Beyer, Dirk; Degel, Wolfgang; Kirsch, Markus

    2014-10-01

    Mask registration control is one of the key performance specifications during the mask qualification process. It is becoming an important factor for yield improvement with the continuously tightening registration specs driven by tight wafer overlay specs. Understanding the impact of miss classified masks on the final wafer yield is gaining more and more attention, especially with the appearance of Multiple Patterning Technologies, where mask to mask overlay effect on wafer is heavily influenced by mask registration. ZEISS has established a promising closed loop solution implemented in the mask house, where the PROVE® system - a highly accurate mask registration and overlay metrology measurement tool, is being used to feed the RegC® - a registration and mask to mask overlay correction tool that can also accurately predict the correction potential in advance. The well-established RegC® process typically reaches 40-70% improvement of the mask registration/overlay error standard deviation. The PROVE® - RegC® closed loop solution has several advantages over alternative registration control methods apart of the mask re-write saving. Among the advantages is the capability to correct for pellicle mounting registration effects without the need to remove the pellicle. This paper will demonstrate improved method for enhanced mask to mask overlay control based on a new scheme of data acquisition and performance validation by the PROVE®. The mask registration data as well as additional mask information will be used to feed the RegC® correction process. Significantly improved mask to mask overlay correction results will be discussed and presented in details.

  9. Interactive initialization of 2D/3D rigid registration

    Energy Technology Data Exchange (ETDEWEB)

    Gong, Ren Hui; Güler, Özgür [The Sheikh Zayed Institute for Pediatric Surgical Innovation, Children' s National Medical Center, Washington, DC 20010 (United States); Kürklüoglu, Mustafa [Department of Cardiac Surgery, Children' s National Medical Center, Washington, DC 20010 (United States); Lovejoy, John [Department of Orthopaedic Surgery and Sports Medicine, Children' s National Medical Center, Washington, DC 20010 (United States); Yaniv, Ziv, E-mail: ZYaniv@childrensnational.org [The Sheikh Zayed Institute for Pediatric Surgical Innovation, Children' s National Medical Center, Washington, DC 20010 and Departments of Pediatrics and Radiology, George Washington University, Washington, DC 20037 (United States)

    2013-12-15

    Purpose: Registration is one of the key technical components in an image-guided navigation system. A large number of 2D/3D registration algorithms have been previously proposed, but have not been able to transition into clinical practice. The authors identify the primary reason for the lack of adoption with the prerequisite for a sufficiently accurate initial transformation, mean target registration error of about 10 mm or less. In this paper, the authors present two interactive initialization approaches that provide the desired accuracy for x-ray/MR and x-ray/CT registration in the operating room setting. Methods: The authors have developed two interactive registration methods based on visual alignment of a preoperative image, MR, or CT to intraoperative x-rays. In the first approach, the operator uses a gesture based interface to align a volume rendering of the preoperative image to multiple x-rays. The second approach uses a tracked tool available as part of a navigation system. Preoperatively, a virtual replica of the tool is positioned next to the anatomical structures visible in the volumetric data. Intraoperatively, the physical tool is positioned in a similar manner and subsequently used to align a volume rendering to the x-ray images using an augmented reality (AR) approach. Both methods were assessed using three publicly available reference data sets for 2D/3D registration evaluation. Results: In the authors' experiments, the authors show that for x-ray/MR registration, the gesture based method resulted in a mean target registration error (mTRE) of 9.3 ± 5.0 mm with an average interaction time of 146.3 ± 73.0 s, and the AR-based method had mTREs of 7.2 ± 3.2 mm with interaction times of 44 ± 32 s. For x-ray/CT registration, the gesture based method resulted in a mTRE of 7.4 ± 5.0 mm with an average interaction time of 132.1 ± 66.4 s, and the AR-based method had mTREs of 8.3 ± 5.0 mm with interaction times of 58 ± 52 s. Conclusions: Based on

  10. Pro Forma Registration of Companies

    DEFF Research Database (Denmark)

    Werlauff, Erik

    2010-01-01

    The article analyses the view taken by Community law on companies' pro forma registration in another EU or EEA country. Community law recognises pro forma registration under company law, i.e. a brass plate is sufficient, whereas it does not recognise pro forma registration under tax law, i.......e. a brass plate is not sufficient. The article provides reasons for the differential treatment of the two contexts and clarifies the difference on the basis of the Hubbard criterion, in which it was ruled that the effectiveness of Community law cannot vary according to the various branches of national law....

  11. Registration of randomized clinical trials

    DEFF Research Database (Denmark)

    Østervig, R M; Sonne, A; Rasmussen, L S

    2015-01-01

    BACKGROUND: Registration of interventional studies is necessary according to the Declaration of Helsinki but implementation has been a challenge for many journals. Acta Anaesthesiologica Scandinavica (Acta) requires registration for studies conducted after January 1(st) 2010. We aimed to assess...... registered when it could be verified that patient enrolment was started after registration in a trial registry. RESULTS: We identified 200 RCTs. Dates for patient enrolment were not specified in 51 (25.5%). The proportion of correctly registered trials increased significantly from 17.1% (19/111) for trials...

  12. 采用主监视窗扩展技术的增强现实三维注册方法%AN AUGMENTED REALITY 3D REGISTRATION METHOD USING MAIN-BESEL EXTENSION TECHNOLOGY

    Institute of Scientific and Technical Information of China (English)

    李红波; 王绪; 聂平

    2014-01-01

    In augmented reality 3D registration,when adopting the strategy of re-detection the stuttering phenomenon is serious.We pro-pose an augmented reality 3D registration method using main-besel extension technology.In detection phase,we introduce feature point credi-bility and main-besel,and design the segmentation,extension,and regulation strategy of the main besel,thus substantially improve the com-putation speed.In tracking phase,we adopt the image pyramid-based optical flow algorithm to track feature points.Experiments demonstrate that the presented approach eases the stuttering situation effectively,and improves the real-time capability of the whole system as well.%在增强现实三维注册中,采用重新检测策略时顿卡现象严重。提出一种采用主监视窗扩展技术的增强现实三维注册方法。在检测阶段,引入特征点可信度和主监视窗,并设计主监视窗的分割、扩展和调控策略,大幅提升了计算速度;在跟踪阶段,采用基于图像金字塔的光流算法进行特征点跟踪。实验证明,该方法不仅有效缓解了顿卡现象,也提升了系统整体的实时性。

  13. Quick Web Services Lookup Model Based on Hierarchical Registration

    Institute of Scientific and Technical Information of China (English)

    谢山; 朱国进; 陈家训

    2003-01-01

    Quick Web Services Lookup (Q-WSL) is a new model to registration and lookup of complex services in the Internet. The model is designed to quickly find complex Web services by using hierarchical registration method. The basic concepts of Web services system are introduced and presented, and then the method of hierarchical registration of services is described. In particular, service query document description and service lookup procedure are concentrated, and it addresses how to lookup these services which are registered in the Web services system. Furthermore, an example design and an evaluation of its performance are presented.Specifically, it shows that the using of attributionbased service query document design and contentbased hierarchical registration in Q-WSL allows service requesters to discover needed services more flexibly and rapidly. It is confirmed that Q-WSL is very suitable for Web services system.

  14. Computer Registration Becoming Mandatory

    CERN Multimedia

    2003-01-01

    Following the decision by the CERN Management Board (see Weekly Bulletin 38/2003), registration of all computers connected to CERN's network will be enforced and only registered computers will be allowed network access. The implementation has started with the IT buildings, continues with building 40 and the Prevessin site (as of Tuesday 4th November 2003), and will cover the whole of CERN before the end of this year. We therefore recommend strongly that you register all your computers in CERN's network database (Ethernet and wire-less cards) as soon as possible without waiting for the access restriction to take force. This will allow you accessing the network without interruption and help IT service providers to contact you in case of problems (security problems, viruses, etc.) • Users WITH a CERN computing account register at: http://cern.ch/register/ (CERN Intranet page) • Visitors WITHOUT a CERN computing account (e.g. short term visitors) register at: http://cern.ch/registerVisitorComp...

  15. Computer Registration Becoming Mandatory

    CERN Multimedia

    2003-01-01

    Following the decision by the CERN Management Board (see Weekly Bulletin 38/2003), registration of all computers connected to CERN's network will be enforced and only registered computers will be allowed network access. The implementation has started with the IT buildings, continues with building 40 and the Prevessin site (as of Tuesday 4th November 2003), and will cover the whole of CERN before the end of this year. We therefore recommend strongly that you register all your computers in CERN's network database including all network access cards (Ethernet AND wireless) as soon as possible without waiting for the access restriction to take force. This will allow you accessing the network without interruption and help IT service providers to contact you in case of problems (e.g. security problems, viruses, etc.) Users WITH a CERN computing account register at: http://cern.ch/register/ (CERN Intranet page) Visitors WITHOUT a CERN computing account (e.g. short term visitors) register at: http://cern.ch/regis...

  16. KW-SIFT descriptor for remote-sensing image registration

    Institute of Scientific and Technical Information of China (English)

    Xiangzeng Liu; Zheng Tian; Weidong Yan; Xifa Duan

    2011-01-01

    A technique to construct an affine invariant descriptor for remote-sensing image registration based on the scale invariant features transform (SIFT) in a kernel space is proposed.Affine invariant SIFT descriptor is first developed in an elliptical region determined by the Hessian matrix of the feature points.Thereafter,the descriptor is mapped to a feature space induced by a kernel, and a new descriptor is constructed by whitening the mapped descriptor in the feature space, with the transform called KW-SIFT.In a final step, the new descriptor is used to register remote-sensing images.Experimental results for remote-sensing image registration indicate that the proposed method improves the registration performance as compared with other related methods.%@@ A technique to construct an affine invariant descriptor for remote-sensing image registration based on the scale invariant features transform (SIFT) in a kernel space is proposed.Affine invariant SIFT descriptor is first developed in an elliptical region determined by the Hessian matrix of the feature points.Thereafter,the descriptor is mapped to a feature space induced by a kernel, and a new descriptor is constructed by whitening the mapped descriptor in the feature space, with the transform called KW-SIFT.In a final step, the new descriptor is used to register remote-sensing images.Experimental results for remote-sensing image registration indicate that the proposed method improves the registration performance as compared with other related methods.

  17. Automatic nonrigid registration of whole body CT mice images.

    Science.gov (United States)

    Li, Xia; Yankeelov, Thomas E; Peterson, Todd E; Gore, John C; Dawant, Benoit M

    2008-04-01

    Three-dimensional intra- and intersubject registration of image volumes is important for tasks that include quantification of temporal/longitudinal changes, atlas-based segmentation, computing population averages, or voxel and tensor-based morphometry. While a number of methods have been proposed to address this problem, few have focused on the problem of registering whole body image volumes acquired either from humans or small animals. These image volumes typically contain a large number of articulated structures, which makes registration more difficult than the registration of head images, to which the majority of registration algorithms have been applied. This article presents a new method for the automatic registration of whole body computed tomography (CT) volumes, which consists of two main steps. Skeletons are first brought into approximate correspondence with a robust point-based method. Transformations so obtained are refined with an intensity-based nonrigid registration algorithm that includes spatial adaptation of the transformation's stiffness. The approach has been applied to whole body CT images of mice, to CT images of the human upper torso, and to human head and neck CT images. To validate the authors method on soft tissue structures, which are difficult to see in CT images, the authors use coregistered magnetic resonance images. They demonstrate that the approach they propose can successfully register image volumes even when these volumes are very different in size and shape or if they have been acquired with the subjects in different positions.

  18. Geometrical analysis of registration errors in point-based rigid-body registration using invariants.

    Science.gov (United States)

    Shamir, Reuben R; Joskowicz, Leo

    2011-02-01

    Point-based rigid registration is the method of choice for aligning medical datasets in diagnostic and image-guided surgery systems. The most clinically relevant localization error measure is the Target Registration Error (TRE), which is the distance between the image-defined target and the corresponding target defined on another image or on the physical anatomy after registration. The TRE directly depends on the Fiducial Localization Error (FLE), which is the discrepancy between the selected and the actual (unknown) fiducial locations. Since the actual locations of targets usually cannot be measured after registration, the TRE is often estimated by the Fiducial Registration Error (FRE), which is the RMS distance between the fiducials in both datasets after registration, or with Fitzpatrick's TRE (FTRE) formula. However, low FRE-TRE and FTRE-TRE correlations have been reported in clinical practice and in theoretical studies. In this article, we show that for realistic FLE classes, the TRE and the FRE are uncorrelated, regardless of the target location and the number of fiducials and their configuration, and regardless of the FLE magnitude distribution. We use a geometrical approach and classical invariant theory to model the FLE and derive its relation to the TRE and FRE values. We show that, for these FLE classes, the FTRE and TRE are also uncorrelated. Finally, we show with simulations on clinical data that the FRE-TRE correlation is low also in the neighborhood of the FLE-FRE invariant classes. Consequently, and contrary to common practice, the FRE and FTRE may not always be used as surrogates for the TRE.

  19. Heuristic approach to image registration

    Science.gov (United States)

    Gertner, Izidor; Maslov, Igor V.

    2000-08-01

    Image registration, i.e. correct mapping of images obtained from different sensor readings onto common reference frame, is a critical part of multi-sensor ATR/AOR systems based on readings from different types of sensors. In order to fuse two different sensor readings of the same object, the readings have to be put into a common coordinate system. This task can be formulated as optimization problem in a space of all possible affine transformations of an image. In this paper, a combination of heuristic methods is explored to register gray- scale images. The modification of Genetic Algorithm is used as the first step in global search for optimal transformation. It covers the entire search space with (randomly or heuristically) scattered probe points and helps significantly reduce the search space to a subspace of potentially most successful transformations. Due to its discrete character, however, Genetic Algorithm in general can not converge while coming close to the optimum. Its termination point can be specified either as some predefined number of generations or as achievement of a certain acceptable convergence level. To refine the search, potential optimal subspaces are searched using more delicate and efficient for local search Taboo and Simulated Annealing methods.

  20. Drug Establishments Current Registration Site

    Data.gov (United States)

    U.S. Department of Health & Human Services — The Drug Establishments Current Registration Site (DECRS) is a database of current information submitted by drug firms to register establishments (facilities) which...

  1. 44 CFR 206.112 - Registration period.

    Science.gov (United States)

    2010-10-01

    ... 44 Emergency Management and Assistance 1 2010-10-01 2010-10-01 false Registration period. 206.112... Households § 206.112 Registration period. (a) Initial period. The standard FEMA registration period is 60...) Extension of the registration period. The regional administrator or his/her designee may extend the...

  2. Multi-atlas segmentation with particle-based group-wise image registration.

    Science.gov (United States)

    Lee, Joohwi; Lyu, Ilwoo; Styner, Martin

    2014-03-21

    We propose a novel multi-atlas segmentation method that employs a group-wise image registration method for the brain segmentation on rodent magnetic resonance (MR) images. The core element of the proposed segmentation is the use of a particle-guided image registration method that extends the concept of particle correspondence into the volumetric image domain. The registration method performs a group-wise image registration that simultaneously registers a set of images toward the space defined by the average of particles. The particle-guided image registration method is robust with low signal-to-noise ratio images as well as differing sizes and shapes observed in the developing rodent brain. Also, the use of an implicit common reference frame can prevent potential bias induced by the use of a single template in the segmentation process. We show that the use of a particle guided-image registration method can be naturally extended to a novel multi-atlas segmentation method and improves the registration method to explicitly use the provided template labels as an additional constraint. In the experiment, we show that our segmentation algorithm provides more accuracy with multi-atlas label fusion and stability against pair-wise image registration. The comparison with previous group-wise registration method is provided as well.

  3. Microscopic neural image registration based on the structure of mitochondria

    Science.gov (United States)

    Cao, Huiwen; Han, Hua; Rao, Qiang; Xiao, Chi; Chen, Xi

    2017-02-01

    Microscopic image registration is a key component of the neural structure reconstruction with serial sections of neural tissue. The goal of microscopic neural image registration is to recover the 3D continuity and geometrical properties of specimen. During image registration, various distortions need to be corrected, including image rotation, translation, tissue deformation et.al, which come from the procedure of sample cutting, staining and imaging. Furthermore, there is only certain similarity between adjacent sections, and the degree of similarity depends on local structure of the tissue and the thickness of the sections. These factors make the microscopic neural image registration a challenging problem. To tackle the difficulty of corresponding landmarks extraction, we introduce a novel image registration method for Scanning Electron Microscopy (SEM) images of serial neural tissue sections based on the structure of mitochondria. The ellipsoidal shape of mitochondria ensures that the same mitochondria has similar shape between adjacent sections, and its characteristic of broad distribution in the neural tissue guarantees that landmarks based on the mitochondria distributed widely in the image. The proposed image registration method contains three parts: landmarks extraction between adjacent sections, corresponding landmarks matching and image deformation based on the correspondences. We demonstrate the performance of our method with SEM images of drosophila brain.

  4. Image Segmentation, Registration, Compression, and Matching

    Science.gov (United States)

    Yadegar, Jacob; Wei, Hai; Yadegar, Joseph; Ray, Nilanjan; Zabuawala, Sakina

    2011-01-01

    A novel computational framework was developed of a 2D affine invariant matching exploiting a parameter space. Named as affine invariant parameter space (AIPS), the technique can be applied to many image-processing and computer-vision problems, including image registration, template matching, and object tracking from image sequence. The AIPS is formed by the parameters in an affine combination of a set of feature points in the image plane. In cases where the entire image can be assumed to have undergone a single affine transformation, the new AIPS match metric and matching framework becomes very effective (compared with the state-of-the-art methods at the time of this reporting). No knowledge about scaling or any other transformation parameters need to be known a priori to apply the AIPS framework. An automated suite of software tools has been created to provide accurate image segmentation (for data cleaning) and high-quality 2D image and 3D surface registration (for fusing multi-resolution terrain, image, and map data). These tools are capable of supporting existing GIS toolkits already in the marketplace, and will also be usable in a stand-alone fashion. The toolkit applies novel algorithmic approaches for image segmentation, feature extraction, and registration of 2D imagery and 3D surface data, which supports first-pass, batched, fully automatic feature extraction (for segmentation), and registration. A hierarchical and adaptive approach is taken for achieving automatic feature extraction, segmentation, and registration. Surface registration is the process of aligning two (or more) data sets to a common coordinate system, during which the transformation between their different coordinate systems is determined. Also developed here are a novel, volumetric surface modeling and compression technique that provide both quality-guaranteed mesh surface approximations and compaction of the model sizes by efficiently coding the geometry and connectivity

  5. Registration of Standardized Histological Images in Feature Space

    CERN Document Server

    Bagci, Ulas; 10.1117/12.770219

    2009-01-01

    In this paper, we propose three novel and important methods for the registration of histological images for 3D reconstruction. First, possible intensity variations and nonstandardness in images are corrected by an intensity standardization process which maps the image scale into a standard scale where the similar intensities correspond to similar tissues meaning. Second, 2D histological images are mapped into a feature space where continuous variables are used as high confidence image features for accurate registration. Third, we propose an automatic best reference slice selection algorithm that improves reconstruction quality based on both image entropy and mean square error of the registration process. We demonstrate that the choice of reference slice has a significant impact on registration error, standardization, feature space and entropy information. After 2D histological slices are registered through an affine transformation with respect to an automatically chosen reference, the 3D volume is reconstruct...

  6. Simple shape space for 3D face registration

    Science.gov (United States)

    Košir, Andrej; Perkon, Igor; Bracun, Drago; Tasic, Jurij; Mozina, Janez

    2009-09-01

    Three dimensional (3D) face recognition is a topic getting increasing interest in biometric applications. In our research framework we developed a laser scanner that provides 3D cloud information and texture data. In a user scenario with cooperative subjects with indoor light conditions, we address three problems of 3D face biometrics: the face registration, the formulation of a shape space together with a special designed gradient algorithm and the impact of initial approximation to the convergence of a registration algorithm. By defining the face registration as a problem of aligning a 3D data cloud with a predefined reference template, we solve the registration problem with a second order gradient algorithm working on a shape space designed for reducing the computational complexity of the method.

  7. Spatial Information Based Medical Image Registration using Mutual Information

    Directory of Open Access Journals (Sweden)

    Benzheng Wei

    2011-06-01

    Full Text Available Image registration is a valuable technique for medical diagnosis and treatment. Due to the inferiority of image registration using maximum mutual information, a new hybrid method of multimodality medical image registration based on mutual information of spatial information is proposed. The new measure that combines mutual information, spatial information and feature characteristics, is proposed. Edge points are used as features, obtained from a morphology gradient detector. Feature characteristics like location, edge strength and orientation are taken into account to compute a joint probability distribution of corresponding edge points in two images. Mutual information based on this function is minimized to find the best alignment parameters. Finally, the translation parameters are calculated by using a modified Particle Swarm Optimization (MPSO algorithm. The experimental results demonstrate the effectiveness of the proposed registration scheme.

  8. Development and Validation of National Cotton Cultivar Registration lndex Model in Yangtze River Valley

    Institute of Scientific and Technical Information of China (English)

    Naiyin XU; Jian Ll

    2014-01-01

    Based on the cotton variety high yielding potential, fiber quality traits, disease resistance, and early maturity characters, a cultivar registration index model was developed to simplify the tedious calculation process in national cotton registration procedure, and thus to enhance the practical application of cultivar regis-tration index in cotton breeding and cotton recommending. [Method] By means of correlation analysis, partial correlation analysis and path analysis methods, the cor-relation of cotton main properties and their effects on cultivar registration index were explored using the dataset of national cotton regional trials in Yangtze River Val ey during 1996-2013. The cultivar registration index model was constructed with step-wise regression statistical technique to ascertain the quantitative relationship of main characters with cultivar registration index, and the regional cotton trial dataset in 2013 was used to validate the model. [Result] Several characters with larger deter-minants to cultivar registration index were screened out, i.e. lint yield increase ratio, pro-frost yield ratio, verticil ium wilt index, fiber strength, fusarium wilt index and mi-cronaire value. The cultivar registration index model defined the functional relation-ship of cultivar registration index with the selected main characters, among which lint yield increase ratio, fiber strength and micronaire value contributed most to culti-var registration index. The model validation with regional cotton trials in 2013 indi-cated the root mean square error, RMSE was only 2.77, and the variation coeffi-cient was 6.77%, which confirmed the model prediction effect was quite perfect. [Conclusion] The developed cultivar registration index model was reliable enough to simulate the complicated scoring system in cultivar registration procedure, also sim-plified cotton registration process, and enhanced the practicability of the cultivar reg-istration index.

  9. Hierarchical model-based interferometric synthetic aperture radar image registration

    Science.gov (United States)

    Wang, Yang; Huang, Haifeng; Dong, Zhen; Wu, Manqing

    2014-01-01

    With the rapid development of spaceborne interferometric synthetic aperture radar technology, classical image registration methods are incompetent for high-efficiency and high-accuracy masses of real data processing. Based on this fact, we propose a new method. This method consists of two steps: coarse registration that is realized by cross-correlation algorithm and fine registration that is realized by hierarchical model-based algorithm. Hierarchical model-based algorithm is a high-efficiency optimization algorithm. The key features of this algorithm are a global model that constrains the overall structure of the motion estimated, a local model that is used in the estimation process, and a coarse-to-fine refinement strategy. Experimental results from different kinds of simulated and real data have confirmed that the proposed method is very fast and has high accuracy. Comparing with a conventional cross-correlation method, the proposed method provides markedly improved performance.

  10. Objective evaluation of methods to track motion from clinical cardiac-gated tagged MRI without the use of a gold standard

    Science.gov (United States)

    Parages, Felipe M.; Denney, Thomas S.; Brankov, Jovan G.

    2015-03-01

    Cardiac-gated MRI is widely used for the task of measuring parameters related to heart motion. More specifically, gated tagged MRI is the preferred modality to estimate local deformation (strain) and rotational motion (twist) of myocardial tissue. Many methods have been proposed to estimate cardiac motion from gated MRI sequences. However, when dealing with clinical data, evaluation of these methods is problematic due to the absence of gold-standards for cardiac motion. To overcome that, a linear regression scheme known as regression-without-truth (RWT) was proposed in the past. RWT uses priors to model the distribution of true values, thus enabling us to assess image-analysis algorithms without knowledge of the ground-truth. Furthermore, it allows one to rank methods by means of an objective figure-of-merit γ (i.e. precision). In this work we apply RWT to compare the performance of several gated MRI motion-tracking methods (e.g. non-rigid registration, feature based, harmonic phase) at the task of estimating myocardial strain and left-ventricle (LV) twist, from a population of 18 clinical human cardiac-gated tagged MRI studies.

  11. Automated landmark-guided deformable image registration

    Science.gov (United States)

    Kearney, Vasant; Chen, Susie; Gu, Xuejun; Chiu, Tsuicheng; Liu, Honghuan; Jiang, Lan; Wang, Jing; Yordy, John; Nedzi, Lucien; Mao, Weihua

    2015-01-01

    The purpose of this work is to develop an automated landmark-guided deformable image registration (LDIR) algorithm between the planning CT and daily cone-beam CT (CBCT) with low image quality. This method uses an automated landmark generation algorithm in conjunction with a local small volume gradient matching search engine to map corresponding landmarks between the CBCT and the planning CT. The landmarks act as stabilizing control points in the following Demons deformable image registration. LDIR is implemented on graphics processing units (GPUs) for parallel computation to achieve ultra fast calculation. The accuracy of the LDIR algorithm has been evaluated on a synthetic case in the presence of different noise levels and data of six head and neck cancer patients. The results indicate that LDIR performed better than rigid registration, Demons, and intensity corrected Demons for all similarity metrics used. In conclusion, LDIR achieves high accuracy in the presence of multimodality intensity mismatch and CBCT noise contamination, while simultaneously preserving high computational efficiency.

  12. Canny edge-based deformable image registration

    Science.gov (United States)

    Kearney, Vasant; Huang, Yihui; Mao, Weihua; Yuan, Baohong; Tang, Liping

    2017-02-01

    This work focuses on developing a 2D Canny edge-based deformable image registration (Canny DIR) algorithm to register in vivo white light images taken at various time points. This method uses a sparse interpolation deformation algorithm to sparsely register regions of the image with strong edge information. A stability criterion is enforced which removes regions of edges that do not deform in a smooth uniform manner. Using a synthetic mouse surface ground truth model, the accuracy of the Canny DIR algorithm was evaluated under axial rotation in the presence of deformation. The accuracy was also tested using fluorescent dye injections, which were then used for gamma analysis to establish a second ground truth. The results indicate that the Canny DIR algorithm performs better than rigid registration, intensity corrected Demons, and distinctive features for all evaluation matrices and ground truth scenarios. In conclusion Canny DIR performs well in the presence of the unique lighting and shading variations associated with white-light-based image registration.

  13. 3D ultrasound to stereoscopic camera registration through an air-tissue boundary.

    Science.gov (United States)

    Yip, Michael C; Adebar, Troy K; Rohling, Robert N; Salcudean, Septimiu E; Nguan, Christopher Y

    2010-01-01

    A novel registration method between 3D ultrasound and stereoscopic cameras is proposed based on tracking a registration tool featuring both ultrasound fiducials and optical markers. The registration tool is pressed against an air-tissue boundary where it can be seen both in ultrasound and in the camera view. By localizing the fiducials in the ultrasound volume, knowing the registration tool geometry, and tracking the tool with the cameras, a registration is found. This method eliminates the need for external tracking, requires minimal setup, and may be suitable for a range of minimally invasive surgeries. A study of the appearance of ultrasound fiducials on an air-tissue boundary is presented, and an initial assessment of the ability to localize the fiducials in ultrasound with sub-millimeter accuracy is provided. The overall accuracy of registration (1.69 +/- 0.60 mm) is a noticeable improvement over other reported methods and warrants patient studies.

  14. A method for measurement of joint kinematics in vivo by registration of 3-D geometric models with cine phase contrast magnetic resonance imaging data.

    Science.gov (United States)

    Barrance, Peter J; Williams, Glenn N; Novotny, John E; Buchanan, Thomas S

    2005-10-01

    A new method is presented for measuring joint kinematics by optimally matching modeled trajectories of geometric surface models of bones with cine phase contrast (cine-PC) magnetic resonance imaging data. The incorporation of the geometric bone models (GBMs) allows computation of kinematics based on coordinate systems placed relative to full 3-D anatomy, as well as quantification of changes in articular contact locations and relative velocities during dynamic motion. These capabilities are additional to those of cine-PC based techniques that have been used previously to measure joint kinematics during activity. Cine-PC magnitude and velocity data are collected on a fixed image plane prescribed through a repetitively moved skeletal joint. The intersection of each GBM with a simulated image plane is calculated as the model moves along a computed trajectory, and cine-PC velocity data are sampled from the regions of the velocity images within the area of this intersection. From the sampled velocity data, the instantaneous linear and angular velocities of a coordinate system fixed to the GBM are estimated, and integration of the linear and angular velocities is used to predict updated trajectories. A moving validation phantom that produces motions and velocity data similar to those observed in an experiment on human knee kinematics was designed. This phantom was used to assess cine-PC rigid body tracking performance by comparing the kinematics of the phantom measured by this method to similar measurements made using a magnetic tracking system. Average differences between the two methods were measured as 2.82 mm rms for anterior/posterior tibial position, and 2.63 deg rms for axial rotation. An intertrial repeatability study of human knee kinematics using the new method produced rms differences in anterior/posterior tibial position and axial rotation of 1.44 mm and 2.35 deg. The performance of the method is concluded to be sufficient for the effective study of kinematic

  15. Efficient Hyperelastic Regularization for Registration

    DEFF Research Database (Denmark)

    Darkner, Sune; Hansen, Michael S; Larsen, Rasmus;

    2011-01-01

    For most image registration problems a smooth one-to-one mapping is desirable, a diffeomorphism. This can be obtained using priors such as volume preservation, certain kinds of elasticity or both. The key principle is to regularize the strain of the deformation which can be done through penalizat......For most image registration problems a smooth one-to-one mapping is desirable, a diffeomorphism. This can be obtained using priors such as volume preservation, certain kinds of elasticity or both. The key principle is to regularize the strain of the deformation which can be done through...... penalization of the eigen values of the stress tensor. We present a computational framework for regularization of image registration for isotropic hyper elasticity. We formulate an efficient and parallel scheme for computing the principal stain based for a given parameterization by decomposing the left Cauchy...... elastic priors such at the Saint Vernant Kirchoff model, the Ogden material model or Riemanian elasticity. We exemplify the approach through synthetic registration and special tests as well as registration of different modalities; 2D cardiac MRI and 3D surfaces of the human ear. The artificial examples...

  16. Image-based motion estimation for cardiac CT via image registration

    Science.gov (United States)

    Cammin, J.; Taguchi, K.

    2010-03-01

    Images reconstructed from tomographic projection data are subject to motion artifacts from organs that move during the duration of the scan. The effect can be reduced by taking the motion into account in the reconstruction algorithm if an estimate of the deformation exists. This paper presents the estimation of the three-dimensional cardiac motion by registering reconstructed images from cardiac quiet phases as a first step towards motion-compensated cardiac image reconstruction. The non-rigid deformations of the heart are parametrized on a coarse grid on the image volume and are interpolated with cubic b-splines. The optimization problem of finding b-spline coefficients that best describe the observed deformations is ill-posed due to the large number of parameters and the resulting motion vector field is sensitive to the choice of initial parameters. Particularly challenging is the task to capture the twisting motion of the heart. The motion vector field from a dynamic computer phantom of the human heart is used to initialize the transformation parameters for the optimization process with realistic starting values. The results are evaluated by comparing the registered images and the obtained motion vector field to the case when the registration is performed without using prior knowledge about the expected cardiac motion. We find that the registered images are similar for both approaches, but the motion vector field obtained from motion estimation initialized with the phantom describes the cardiac contraction and twisting motion more accurately.

  17. Real-time surface reconstruction from stereo endoscopic images for intraoperative registration

    Science.gov (United States)

    Röhl, S.; Bodenstedt, S.; Suwelack, S.; Kenngott, H.; Mueller-Stich, B. P.; Dillmann, R.; Speidel, S.

    2011-03-01

    Minimally invasive surgery is a medically complex discipline that can heavily benefit from computer assistance. One way to assist the surgeon is to blend in useful information about the intervention into the surgical view using Augmented Reality. This information can be obtained during preoperative planning and integrated into a patient-tailored model of the intervention. Due to soft tissue deformation, intraoperative sensor data such as endoscopic images has to be acquired and non-rigidly registered with the preoperative model to adapt it to local changes. Here, we focus on a procedure that reconstructs the organ surface from stereo endoscopic images with millimeter accuracy in real-time. It deals with stereo camera calibration, pixel-based correspondence analysis, 3D reconstruction and point cloud meshing. Accuracy, robustness and speed are evaluated with images from a test setting as well as intraoperative images. We also present a workflow where the reconstructed surface model is registered with a preoperative model using an optical tracking system. As preliminary result, we show an initial overlay between an intraoperative and a preoperative surface model that leads to a successful rigid registration between these two models.

  18. Pydpiper: a flexible toolkit for constructing novel registration pipelines

    Science.gov (United States)

    Friedel, Miriam; van Eede, Matthijs C.; Pipitone, Jon; Chakravarty, M. Mallar; Lerch, Jason P.

    2014-01-01

    Using neuroimaging technologies to elucidate the relationship between genotype and phenotype and brain and behavior will be a key contribution to biomedical research in the twenty-first century. Among the many methods for analyzing neuroimaging data, image registration deserves particular attention due to its wide range of applications. Finding strategies to register together many images and analyze the differences between them can be a challenge, particularly given that different experimental designs require different registration strategies. Moreover, writing software that can handle different types of image registration pipelines in a flexible, reusable and extensible way can be challenging. In response to this challenge, we have created Pydpiper, a neuroimaging registration toolkit written in Python. Pydpiper is an open-source, freely available software package that provides multiple modules for various image registration applications. Pydpiper offers five key innovations. Specifically: (1) a robust file handling class that allows access to outputs from all stages of registration at any point in the pipeline; (2) the ability of the framework to eliminate duplicate stages; (3) reusable, easy to subclass modules; (4) a development toolkit written for non-developers; (5) four complete applications that run complex image registration pipelines “out-of-the-box.” In this paper, we will discuss both the general Pydpiper framework and the various ways in which component modules can be pieced together to easily create new registration pipelines. This will include a discussion of the core principles motivating code development and a comparison of Pydpiper with other available toolkits. We also provide a comprehensive, line-by-line example to orient users with limited programming knowledge and highlight some of the most useful features of Pydpiper. In addition, we will present the four current applications of the code. PMID:25126069

  19. Pydpiper: A Flexible Toolkit for Constructing Novel Registration Pipelines

    Directory of Open Access Journals (Sweden)

    Miriam eFriedel

    2014-07-01

    Full Text Available Using neuroimaging technologies to elucidate the relationship between genotype and phenotype and brain and behavior will be a key contribution to biomedical research in the twenty-first century. Among the many methods for analyzing neuroimaging data, image registration deserves particular attention due to its wide range of applications. Finding strategies to register together many images and analyze the differences between them can be a challenge, particularly given that different experimental designs require different registration strategies. Moreover, writing software that can handle different types of image registration pipelines in a flexible, reusable and extensible way can be challenging. In response to this challenge, we have created Pydpiper, a neuroimaging registration toolkit written in Python. Pydpiper is an open-source, freely available pipeline framework that provides multiple modules for various image registration applications. Pydpiper offers five key innovations. Specifically: (1 a robust file handling class that allows access to outputs from all stages of registration at any point in the pipeline; (2 the ability of the framework to eliminate duplicate stages; (3 reusable, easy to subclass modules; (4 a development toolkit written for non-developers; (5 four complete applications that run complex image registration pipelines ``out-of-the-box.'' In this paper, we will discuss both the general Pydpiper framework and the various ways in which component modules can be pieced together to easily create new registration pipelines. This will include a discussion of the core principles motivating code development and a comparison of Pydpiper with other available toolkits. We also provide a comprehensive, line-by-line example to orient users with limited programming knowledge and highlight some of the most useful features of Pydpiper. In addition, we will present the four current applications of the code.

  20. Registration and 3D visualization of large microscopy images

    Science.gov (United States)

    Mosaliganti, Kishore; Pan, Tony; Sharp, Richard; Ridgway, Randall; Iyengar, Srivathsan; Gulacy, Alexandra; Wenzel, Pamela; de Bruin, Alain; Machiraju, Raghu; Huang, Kun; Leone, Gustavo; Saltz, Joel

    2006-03-01

    Inactivation of the retinoblastoma gene in mouse embryos causes tissue infiltrations into critical sections of the placenta, which has been shown to affect fetal survivability. Our collaborators in cancer genetics are extremely interested in examining the three dimensional nature of these infiltrations given a stack of two dimensional light microscopy images. Three sets of wildtype and mutant placentas was sectioned serially and digitized using a commercial light microscopy scanner. Each individual placenta dataset consisted of approximately 1000 images totaling 700 GB in size, which were registered into a volumetric dataset using National Library of Medicine's (NIH/NLM) Insight Segmentation and Registration Toolkit (ITK). This paper describes our method for image registration to aid in volume visualization of tissue level intermixing for both wildtype and Rb - specimens. The registration process faces many challenges arising from the large image sizes, damages during sectioning, staining gradients both within and across sections, and background noise. These issues limit the direct application of standard registration techniques due to frequent convergence to local solutions. In this work, we develop a mixture of automated and semi-automated enhancements with ground-truth validation for the mutual information-based registration algorithm. Our final volume renderings clearly show tissue intermixing differences between both wildtype and Rb - specimens which are not obvious prior to registration.

  1. Efficient Hyperelastic Regularization for Registration

    DEFF Research Database (Denmark)

    Darkner, Sune; Hansen, Michael Sass; Larsen, Rasmus;

    2011-01-01

    For most image registration problems a smooth one-to-one mapping is desirable, a diffeomorphism. This can be obtained using priors such as volume preservation, certain kinds of elasticity or both. The key principle is to regularize the strain of the deformation which can be done through penalizat......For most image registration problems a smooth one-to-one mapping is desirable, a diffeomorphism. This can be obtained using priors such as volume preservation, certain kinds of elasticity or both. The key principle is to regularize the strain of the deformation which can be done through...... penalization of the eigen values of the stress tensor. We present a computational framework for regularization of image registration for isotropic hyper elasticity. We formulate an efficient and parallel scheme for computing the principal stain based for a given parameterization by decomposing the left Cauchy...

  2. Language proficiency and nursing registration.

    Science.gov (United States)

    Müller, Amanda

    2016-02-01

    This discussion paper focuses on English proficiency standards for nursing registration in Australia, how Australia has dealt with the issue of language proficiency, and the factors which have led to the establishment of the current language standards. Also, this paper will provide a comparison of the two language tests that are currently accepted in Australia (OET and IELTS), including the appropriateness of these tests and the minimum standards used. The paper will also examine the use of educational background as an indicator of language proficiency. Finally, communication-based complaints in the post-registration environment will be explored, and some discussion will be provided about why pre-registration measures might have failed to prevent such problematic situations from occurring.

  3. A method for extracting multi-organ from four-phase contrasted CT images based on CT value distribution estimation using EM-algorithm

    Science.gov (United States)

    Sakashita, Makiko; Kitasaka, Takayuki; Mori, Kensaku; Suenaga, Yasuhito; Nawano, Shigeru

    2007-03-01

    This paper presents a method for extracting multi-organs from four-phase contrasted CT images taken at different contrast timings (non-contrast, early, portal, and late phases). First, we apply a median filter to each CT image and align four-phase CT images by performing non-rigid volumetric image registration. Then, a three-dimensional joint histogram of CT values is computed from three-phase (early-, portal-, and late-) CT images. We assume that this histogram is a mixture of normal distributions corresponding to the liver, spleen, kidney, vein, artery, muscle, and bone regions. The EM algorithm is employed to estimate each normal distribution. Organ labels are assigned to each voxel using the mahalanobis distance measure. Connected component analysis is applied to correct the shape of each organ region. After that, the pancreas region is extracted from non-contrasted CT images in which other extracted organs and vessel regions are excluded. The EM algorithm is also employed for estimating the distribution of CT values inside the pancreas. We applied this method to seven cases of four-phase CT images. Extraction results show that the proposed method extracted multi-organs satisfactorily.

  4. Regional manifold learning for deformable registration of brain MR images.

    Science.gov (United States)

    Ye, Dong Hye; Hamm, Jihun; Kwon, Dongjin; Davatzikos, Christos; Pohl, Kilian M

    2012-01-01

    We propose a method for deformable registration based on learning the manifolds of individual brain regions. Recent publications on registration of medical images advocate the use of manifold learning in order to confine the search space to anatomically plausible deformations. Existing methods construct manifolds based on a single metric over the entire image domain thus frequently miss regional brain variations. We address this issue by first learning manifolds for specific regions and then computing region-specific deformations from these manifolds. We then determine deformations for the entire image domain by learning the global manifold in such a way that it preserves the region-specific deformations. We evaluate the accuracy of our method by applying it to the LPBA40 dataset and measuring the overlap of the deformed segmentations. The result shows significant improvement in registration accuracy on cortex regions compared to other state of the art methods.

  5. A stereotaxic method of anatomical localization by means of H{sub 2}{sup 15}O positron emission tomography applicable to the brain activation study in cats. Registration of images of cerebral blood flow to brain atlas

    Energy Technology Data Exchange (ETDEWEB)

    Sakiyama, Yojiro; Toyama, Hinako; Oda, Keiichi; Ishii, Shin-ichi; Ishiwata, Kiichi; Ishii, Kenji; Suzuki, Atsuko; Nakayama, Hitomi; Senda, Michio [Tokyo Metropolitan Inst. of Gerontology (Japan)

    1997-11-01

    In the neuronal activation study of normal animals, precise anatomical correlation, preferentially to a detailed brain atlas, is required for the activation foci co-registration. To obtain precise regional correlation between H{sub 2}{sup 15}O-PET images and the brain atlas, a method of stereotaxic image reorientation was applied to an activation study with vibrotactile stimulation. Cats anesthetized with halothane underwent repeated measurements of regional cerebral blood flow (rCBF) in the resting condition and during vibration of the right forepaw. The image set was adjusted three-dimensionally to the atlas. The postmortem brain was sectioned according to the atlas planes. The activated areas were determined by the stimulus-minus-resting subtraction images, and the areas were projected to the atlas. The PET images of the cat brain were compatible both to the postmortem brain slices and to the brain atlas. The activation foci obtained from the subtraction images corresponded to the area around the coronal sulcus, which is electrophysiologically known as the primary sensory area as described in the atlas. There were precise regional correlations between the PET image and anatomy in a PET activation study of the cat by means of stereotaxic image reorientation. (author)

  6. Implicit reference-based group-wise image registration and its application to structural and functional MRI.

    Science.gov (United States)

    Geng, Xiujuan; Christensen, Gary E; Gu, Hong; Ross, Thomas J; Yang, Yihong

    2009-10-01

    In this study, an implicit reference group-wise (IRG) registration with a small deformation, linear elastic model was used to jointly estimate correspondences between a set of MRI images. The performance of pair-wise and group-wise registration algorithms was evaluated for spatial normalization of structural and functional MRI data. Traditional spatial normalization is accomplished by group-to-reference (G2R) registration in which a group of images are registered pair-wise to a reference image. G2R registration is limited due to bias associated with selecting a reference image. In contrast, implicit reference group-wise (IRG) registration estimates correspondences between a group of images by jointly registering the images to an implicit reference corresponding to the group average. The implicit reference is estimated during IRG registration eliminating the bias associated with selecting a specific reference image. Registration performance was evaluated using segmented T1-weighted magnetic resonance images from the Nonrigid Image Registration Evaluation Project (NIREP), DTI and fMRI images. Implicit reference pair-wise (IRP) registration-a special case of IRG registration for two images-is shown to produce better relative overlap than IRG for pair-wise registration using the same small deformation, linear elastic registration model. However, IRP-G2R registration is shown to have significant transitivity error, i.e., significant inconsistencies between correspondences defined by different pair-wise transformations. In contrast, IRG registration produces consistent correspondence between images in a group at the cost of slightly reduced pair-wise RO accuracy compared to IRP-G2R. IRG spatial normalization of the fractional anisotropy (FA) maps of DTI is shown to have smaller FA variance compared with G2R methods using the same elastic registration model. Analyses of fMRI data sets with sensorimotor and visual tasks show that IRG registration, on average, increases the

  7. Automatic registration of serial mammary gland sections

    Energy Technology Data Exchange (ETDEWEB)

    Arganda-Carreras, Ignacio; Fernandez-Gonzalez, Rodrigo; Ortiz-de-Solorzano, Carlos

    2004-04-13

    We present two new methods for automatic registration of microscope images of consecutive tissue sections. They represent two possibilities for the first step in the 3-D reconstruction of histological structures from serially sectioned tissue blocks. The goal is to accurately align the sections in order to place every relevant shape contained in each image in front of its corresponding shape in the following section before detecting the structures of interest and rendering them in 3D. This is accomplished by finding the best rigid body transformation (translation and rotation) of the image being registered by maximizing a matching function based on the image content correlation. The first method makes use of the entire image information, whereas the second one uses only the information located at specific sites, as determined by the segmentation of the most relevant tissue structures. To reduce computing time, we use a multiresolution pyramidal approach that reaches the best registration transformation in increasing resolution steps. In each step, a subsampled version of the images is used. Both methods rely on a binary image which is a thresholded version of the Sobel gradients of the image (first method) or a set of boundaries manually or automatically obtained that define important histological structures of the sections. Then distance-transform of the binary image is computed. A proximity function is then calculated between the distance image of the image being registered and that of the reference image. The transformation providing a maximum of the proximity function is then used as the starting point of the following step. This is iterated until the registration error lies below a minimum value.

  8. Automatic Image Registration Algorithm Based on Wavelet Transform

    Institute of Scientific and Technical Information of China (English)

    LIU Qiong; NI Guo-qiang

    2006-01-01

    An automatic image registration approach based on wavelet transform is proposed. This proposed method utilizes multiscale wavelet transform to extract feature points. A coarse-to-fine feature matching method is utilized in the feature matching phase. A two-way matching method based on cross-correlation to get candidate point pairs and a fine matching based on support strength combine to form the matching algorithm. At last, based on an affine transformation model, the parameters are iteratively refined by using the least-squares estimation approach. Experimental results have verified that the proposed algorithm can realize automatic registration of various kinds of images rapidly and effectively.

  9. Nonrigid Medical Image Registration Based on Mesh Deformation Constraints

    Directory of Open Access Journals (Sweden)

    XiangBo Lin

    2013-01-01

    Full Text Available Regularizing the deformation field is an important aspect in nonrigid medical image registration. By covering the template image with a triangular mesh, this paper proposes a new regularization constraint in terms of connections between mesh vertices. The connection relationship is preserved by the spring analogy method. The method is evaluated by registering cerebral magnetic resonance imaging (MRI image data obtained from different individuals. Experimental results show that the proposed method has good deformation ability and topology-preserving ability, providing a new way to the nonrigid medical image registration.

  10. Registration in the Danish Regional Nonmelanoma Skin Cancer Dermatology Database: completeness of registration and accuracy of key variables

    Directory of Open Access Journals (Sweden)

    Anna L Lamberg

    2010-05-01

    Full Text Available Anna L Lamberg1, Deirdre Cronin-Fenton2, Anne B Olesen11Department of Dermatology, 2Department of Clinical Epidemiology, Aarhus University Hospital, Aarhus, C, DenmarkObjective: To validate a clinical database for nonmelanoma skin cancer (NMSC with the aim of monitoring and predicting the prognosis of NMSC treated by dermatologists in clinics in the central and north Denmark regions.Methods: We assessed the completeness of registration of patients and follow-up visits, and positive predictive value (PPV, negative predictive value (NPV, sensitivity, and specificity of registrations in the database. We used the Danish Pathology Registry (DPR (n = 288 and a review of randomly selected medical records (n = 67 from two clinics as gold standards.Results: The completeness of registration of patients was 62% and 76% with DPR and medical record review as gold standards, respectively. The completeness of registration of 1st and 2nd follow up visits was 85% and 69%, respectively. The PPV and NPV ranged from 85% to 99%, and the sensitivity and specificity from 67% to 100%.Conclusion: Overall, the accuracy of variables registered in the NMSC database was satisfactory but completeness of patient registration and follow-up visits were modest. The NMSC database is a potentially valuable tool for monitoring and facilitating improvement of NMSC treatment in dermatology clinics. However, there is still room for improvement of registration of both patients and their follow-up visits.Keywords: nonmelanoma skin cancer, validation, database, positive predictive value, completeness

  11. Visible Human图象数据集的自动匹配方法%AUTOMATIC METHODS FOR REGISTRATION OF VISIBLE HUMAN DATASET

    Institute of Scientific and Technical Information of China (English)

    贾春光; 谭欧; 吕旭东; 段会龙; 吕维雪

    2001-01-01

    The Visible Human Project (VHP) is a digital image library of CT, MRI and cryosection images of the three-dimensional male and female human body developed by the National Library of Medicine. The Visible Human Project data sets tend to serve as a common reference point for the construction of medical image libraries and virtual anatomy environments. In this paper, CT images are correlated with gray level firstly, and methods based on voxel similarity are used to match the CT and MRI images automatically. Genetic algorithms with adaptive search space are used to establish the global optimization. Preliminary experiment results are given in this paper.%Visible Human计划是由美国国家医学图书馆发起建立的真实三维人体的CT、MRI和解剖切面的数字化图象库。Visible Human数据集已经成为构造电子医学图象库和虚拟解剖环境的理想基础。本文首先对CT图象进行灰度校正,并用基于像素相似性的方法实现了CT图象和MRI图象间的自动匹配。具有自适应空间搜索的遗传算法被用于实现全局性的优化过程。本文给出了初步的实验结果。

  12. Correcting image placement errors using registration control (RegC®) technology in the photomask periphery

    Science.gov (United States)

    Cohen, Avi; Lange, Falk; Ben-Zvi, Guy; Graitzer, Erez; Vladimir, Dmitriev

    2012-11-01

    The ITRS roadmap specifies wafer overlay control as one of the major tasks for the sub 40 nm nodes in addition to CD control and defect control. Wafer overlay is strongly dependent on mask image placement error (registration errors or Reg errors)1. The specifications for registration or mask placement accuracy are significantly tighter in some of the double patterning techniques (DPT). This puts a heavy challenge on mask manufacturers (mask shops) to comply with advanced node registration specifications. The conventional methods of feeding back the systematic registration error to the E-beam writer and re-writing the mask are becoming difficult, expensive and not sufficient for the advanced nodes especially for double pattering technologies. Six production masks were measured on a standard registration metrology tool and the registration errors were calculated and plotted. Specially developed algorithm along with the RegC Wizard (dedicated software) was used to compute a correction lateral strain field that would minimize the registration errors. This strain field was then implemented in the photomask bulk material using an ultra short pulse laser based system. Finally the post process registration error maps were measured and the resulting residual registration error field with and without scale and orthogonal errors removal was calculated. In this paper we present a robust process flow in the mask shop which leads up to 32% registration 3sigma improvement, bringing some out-of-spec masks into spec, utilizing the RegC® process in the photomask periphery while leaving the exposure field optically unaffected.

  13. Feasibility of Multimodal Deformable Registration for Head and Neck Tumor Treatment Planning

    Energy Technology Data Exchange (ETDEWEB)

    Fortunati, Valerio, E-mail: v.fortunati@erasmusmc.nl [Biomedical Imaging Group Rotterdam, Department of Medical Informatics and Radiology, Erasmus MC University Medical Center, Rotterdam (Netherlands); Verhaart, René F. [Hyperthermia Unit, Department of Radiation Oncology, Erasmus MC University Medical Center Cancer Institute, Rotterdam (Netherlands); Angeloni, Francesco [Istituto di Ricovero e Cura a Carattere Scientifico Foundation SDN for Research and High Education in Nuclear Diagnostics, Naples (Italy); Lugt, Aad van der [Department of Radiology, Erasmus MC University Medical Center, Rotterdam (Netherlands); Niessen, Wiro J. [Biomedical Imaging Group Rotterdam, Department of Medical Informatics and Radiology, Erasmus MC University Medical Center, Rotterdam (Netherlands); Faculty of Applied Sciences, Delft University of Technology, Delft (Netherlands); Veenland, Jifke F. [Biomedical Imaging Group Rotterdam, Department of Medical Informatics and Radiology, Erasmus MC University Medical Center, Rotterdam (Netherlands); Paulides, Margarethus M. [Hyperthermia Unit, Department of Radiation Oncology, Erasmus MC University Medical Center Cancer Institute, Rotterdam (Netherlands); Walsum, Theo van [Biomedical Imaging Group Rotterdam, Department of Medical Informatics and Radiology, Erasmus MC University Medical Center, Rotterdam (Netherlands)

    2014-09-01

    Purpose: To investigate the feasibility of using deformable registration in clinical practice to fuse MR and CT images of the head and neck for treatment planning. Method and Materials: A state-of-the-art deformable registration algorithm was optimized, evaluated, and compared with rigid registration. The evaluation was based on manually annotated anatomic landmarks and regions of interest in both modalities. We also developed a multiparametric registration approach, which simultaneously aligns T1- and T2-weighted MR sequences to CT. This was evaluated and compared with single-parametric approaches. Results: Our results show that deformable registration yielded a better accuracy than rigid registration, without introducing unrealistic deformations. For deformable registration, an average landmark alignment of approximatively 1.7 mm was obtained. For all the regions of interest excluding the cerebellum and the parotids, deformable registration provided a median modified Hausdorff distance of approximatively 1 mm. Similar accuracies were obtained for the single-parameter and multiparameter approaches. Conclusions: This study demonstrates that deformable registration of head-and-neck CT and MR images is feasible, with overall a significanlty higher accuracy than for rigid registration.

  14. PCA-based groupwise image registration for quantitative MRI.

    Science.gov (United States)

    Huizinga, W; Poot, D H J; Guyader, J-M; Klaassen, R; Coolen, B F; van Kranenburg, M; van Geuns, R J M; Uitterdijk, A; Polfliet, M; Vandemeulebroucke, J; Leemans, A; Niessen, W J; Klein, S

    2016-04-01

    Quantitative magnetic resonance imaging (qMRI) is a technique for estimating quantitative tissue properties, such as the T1 and T2 relaxation times, apparent diffusion coefficient (ADC), and various perfusion measures. This estimation is achieved by acquiring multiple images with different acquisition parameters (or at multiple time points after injection of a contrast agent) and by fitting a qMRI signal model to the image intensities. Image registration is often necessary to compensate for misalignments due to subject motion and/or geometric distortions caused by the acquisition. However, large differences in image appearance make accurate image registration challenging. In this work, we propose a groupwise image registration method for compensating misalignment in qMRI. The groupwise formulation of the method eliminates the requirement of choosing a reference image, thus avoiding a registration bias. The method minimizes a cost function that is based on principal component analysis (PCA), exploiting the fact that intensity changes in qMRI can be described by a low-dimensional signal model, but not requiring knowledge on the specific acquisition model. The method was evaluated on 4D CT data of the lungs, and both real and synthetic images of five different qMRI applications: T1 mapping in a porcine heart, combined T1 and T2 mapping in carotid arteries, ADC mapping in the abdomen, diffusion tensor mapping in the brain, and dynamic contrast-enhanced mapping in the abdomen. Each application is based on a different acquisition model. The method is compared to a mutual information-based pairwise registration method and four other state-of-the-art groupwise registration methods. Registration accuracy is evaluated in terms of the precision of the estimated qMRI parameters, overlap of segmented structures, distance between corresponding landmarks, and smoothness of the deformation. In all qMRI applications the proposed method performed better than or equally well as

  15. Altitude Registration of Limb-Scattered Radiation

    Science.gov (United States)

    Moy, Leslie; Bhartia, Pawan K.; Jaross, Glen; Loughman, Robert; Kramarova, Natalya; Chen, Zhong; Taha, Ghassan; Chen, Grace; Xu, Philippe

    2017-01-01

    One of the largest constraints to the retrieval of accurate ozone profiles from UV backscatter limb sounding sensors is altitude registration. Two methods, the Rayleigh scattering attitude sensing (RSAS) and absolute radiance residual method (ARRM), are able to determine altitude registration to the accuracy necessary for long-term ozone monitoring. The methods compare model calculations of radiances to measured radiances and are independent of onboard tracking devices. RSAS determines absolute altitude errors, but, because the method is susceptible to aerosol interference, it is limited to latitudes and time periods with minimal aerosol contamination. ARRM, a new technique introduced in this paper, can be applied across all seasons and altitudes. However, it is only appropriate for relative altitude error estimates. The application of RSAS to Limb Profiler (LP) measurements from the Ozone Mapping and Profiler Suite (OMPS) on board the Suomi NPP (SNPP) satellite indicates tangent height (TH) errors greater than 1 km with an absolute accuracy of +/-200 m. Results using ARRM indicate a approx. 300 to 400m intra-orbital TH change varying seasonally +/-100 m, likely due to either errors in the spacecraft pointing or in the geopotential height (GPH) data that we use in our analysis. ARRM shows a change of approx. 200m over 5 years with a relative accuracy (a long-term accuracy) of 100m outside the polar regions.

  16. Altitude Registration of Limb-Scattered Radiation

    Science.gov (United States)

    Moy, Leslie; Bhartia, Pawan K.; Jaross, Glen; Loughman, Robert; Kramarova, Natalya; Chen, Zhong; Taha, Ghassan; Chen, Grace; Xu, Philippe

    2017-01-01

    One of the largest constraints to the retrieval of accurate ozone profiles from UV backscatter limb sounding sensors is altitude registration. Two methods, the Rayleigh scattering attitude sensing (RSAS) and absolute radiance residual method (ARRM), are able to determine altitude registration to the accuracy necessary for long-term ozone monitoring. The methods compare model calculations of radiances to measured radiances and are independent of onboard tracking devices. RSAS determines absolute altitude errors, but, because the method is susceptible to aerosol interference, it is limited to latitudes and time periods with minimal aerosol contamination. ARRM, a new technique introduced in this paper, can be applied across all seasons and altitudes. However, it is only appropriate for relative altitude error estimates. The application of RSAS to Limb Profiler (LP) measurements from the Ozone Mapping and Profiler Suite (OMPS) on board the Suomi NPP (SNPP) satellite indicates tangent height (TH) errors greater than 1 km with an absolute accuracy of +/-200 m. Results using ARRM indicate a approx. 300 to 400m intra-orbital TH change varying seasonally +/-100 m, likely due to either errors in the spacecraft pointing or in the geopotential height (GPH) data that we use in our analysis. ARRM shows a change of approx. 200m over 5 years with a relative accuracy (a long-term accuracy) of 100m outside the polar regions.

  17. Multi-modal registration for correlative microscopy using image analogies.

    Science.gov (United States)

    Cao, Tian; Zach, Christopher; Modla, Shannon; Powell, Debbie; Czymmek, Kirk; Niethammer, Marc

    2014-08-01

    Correlative microscopy is a methodology combining the functionality of light microscopy with the high resolution of electron microscopy and other microscopy technologies for the same biological specimen. In this paper, we propose an image registration method for correlative microscopy, which is challenging due to the distinct appearance of biological structures when imaged with different modalities. Our method is based on image analogies and allows to transform images of a given modality into the appearance-space of another modality. Hence, the registration between two different types of microscopy images can be transformed to a mono-modality image registration. We use a sparse representation model to obtain image analogies. The method makes use of corresponding image training patches of two different imaging modalities to learn a dictionary capturing appearance relations. We test our approach on backscattered electron (BSE) scanning electron microscopy (SEM)/confocal and transmission electron microscopy (TEM)/confocal images. We perform rigid, affine, and deformable registration via B-splines and show improvements over direct registration using both mutual information and sum of squared differences similarity measures to account for differences in image appearance. Copyright © 2013 Elsevier B.V. All rights reserved.

  18. USDA registration and rectification requirements

    Science.gov (United States)

    Allen, R.

    1982-01-01

    Some of the requirements of the United States Department of Agriculture for accuracy of aerospace acquired data, and specifically, requirements for registration and rectification of remotely sensed data are discussed. Particular attention is given to foreign and domestic crop estimation and forecasting, forestry information applications, and rangeland condition evaluations.

  19. What drives Users' Website Registration?

    NARCIS (Netherlands)

    T. Li (Ting); P.A. Pavlou (Paul)

    2013-01-01

    textabstractUser registration is an important prerequisite for the success of many websites by enabling users to gain access to domain information and personalized content. It is not always desirable for users, however, because they need to disclose personal information. This paper examines what dri

  20. 75 FR 4383 - Pesticide Products: Registration Applications

    Science.gov (United States)

    2010-01-27

    ... AGENCY Pesticide Products: Registration Applications AGENCY: Environmental Protection Agency (EPA). ACTION: Notice. SUMMARY: This notice announces receipt of applications to register pesticide products... comments by the comment period deadline identified. II. Registration Applications EPA received applications...

  1. Improvement of registration accuracy in accelerated partial breast irradiation using the point-based rigid-body registration algorithm for patients with implanted fiducial markers

    Energy Technology Data Exchange (ETDEWEB)

    Inoue, Minoru; Yoshimura, Michio, E-mail: myossy@kuhp.kyoto-u.ac.jp; Sato, Sayaka; Nakamura, Mitsuhiro; Yamada, Masahiro; Hirata, Kimiko; Ogura, Masakazu; Hiraoka, Masahiro [Department of Radiation Oncology and Image-Applied Therapy, Kyoto University Graduate School of Medicine, Kyoto 606-8507 (Japan); Sasaki, Makoto; Fujimoto, Takahiro [Division of Clinical Radiology Service, Kyoto University Hospital, Kyoto 606-8507 (Japan)

    2015-04-15

    Purpose: To investigate image-registration errors when using fiducial markers with a manual method and the point-based rigid-body registration (PRBR) algorithm in accelerated partial breast irradiation (APBI) patients, with accompanying fiducial deviations. Methods: Twenty-two consecutive patients were enrolled in a prospective trial examining 10-fraction APBI. Titanium clips were implanted intraoperatively around the seroma in all patients. For image-registration, the positions of the clips in daily kV x-ray images were matched to those in the planning digitally reconstructed radiographs. Fiducial and gravity registration errors (FREs and GREs, respectively), representing resulting misalignments of the edge and center of the target, respectively, were compared between the manual and algorithm-based methods. Results: In total, 218 fractions were evaluated. Although the mean FRE/GRE values for the manual and algorithm-based methods were within 3 mm (2.3/1.7 and 1.3/0.4 mm, respectively), the percentages of fractions where FRE/GRE exceeded 3 mm using the manual and algorithm-based methods were 18.8%/7.3% and 0%/0%, respectively. Manual registration resulted in 18.6% of patients with fractions of FRE/GRE exceeding 5 mm. The patients with larger clip deviation had significantly more fractions showing large FRE/GRE using manual registration. Conclusions: For image-registration using fiducial markers in APBI, the manual registration results in more fractions with considerable registration error due to loss of fiducial objectivity resulting from their deviation. The authors recommend the PRBR algorithm as a safe and effective strategy for accurate, image-guided registration and PTV margin reduction.

  2. Automatic Registration and Error Detection of Multiple Slices Using Landmarks

    Directory of Open Access Journals (Sweden)

    Hans Frimmel

    2001-01-01

    Full Text Available Objectives. When analysing the 3D structure of tissue, serial sectioning and staining of the resulting slices is sometimes the preferred option. This leads to severe registration problems. In this paper, a method for automatic registration and error detection of slices using landmark needles has been developed. A cost function takes some parameters from the current state of the problem to be solved as input and gives a quality of the current solution as output. The cost function used in this paper, is based on a model of the slices and the landmark needles. The method has been used to register slices of prostates in order to create 3D computer models. Manual registration of the same prostates has been undertaken and compared with the results from the algorithm. Methods. Prostates from sixteen men who underwent radical prostatectomy were formalin fixed with landmark needles, sliced and the slices were computer reconstructed. The cost function takes rotation and translation for each prostate slice, as well as slope and offset for each landmark needle as input. The current quality of fit of the model, using the input parameters given, is returned. The function takes the built‐in instability of the model into account. The method uses a standard algorithm to optimize the prostate slice positions. To verify the result, s standard method in statistics was used. Results. The methods were evaluated for 16 prostates. When testing blindly, a physician could not determine whether the registration shown to him were created by the automated method described in this paper, or manually by an expert, except in one out of 16 cases. Visual inspection and analysis of the outlier confirmed that the input data had been deformed. The automatic detection of erroneous slices marked a few slices, including the outlier, as suspicious. Conclusions. The model based registration performs better than traditional simple slice‐wise registration. In the case of prostate

  3. Configurable automatic detection and registration of fiducial frames for device-to-image registration in MRI-guided prostate interventions.

    Science.gov (United States)

    Tokuda, Junichi; Song, Sang-Eun; Tuncali, Kemal; Tempany, Clare; Hata, Nobuhiko

    2013-01-01

    We propose a novel automatic fiducial frame detection and registration method for device-to-image registration in MRI-guided prostate interventions. The proposed method does not require any manual selection of markers, and can be applied to a variety of fiducial frames, which consist of multiple cylindrical MR-visible markers placed in different orientations. The key idea is that automatic extraction of linear features using a line filter is more robust than that of bright spots by thresholding; by applying a line set registration algorithm to the detected markers, the frame can be registered to the MRI. The method was capable of registering the fiducial frame to the MRI with an accuracy of 1.00 +/- 0.73 mm and 1.41 +/- 1.06 degrees in a phantom study, and was sufficiently robust to detect the fiducial frame in 98% of images acquired in clinical cases despite the existence of anatomical structures in the field of view.

  4. 3-D Registration on Carotid Artery imaging data: MRI for different timesteps

    CERN Document Server

    Bizopoulos, Paschalis A; Michalis, Lampros K; Koutsouris, Dimitrios D; Fotiadis, Dimitrios I

    2016-01-01

    A common problem which is faced by the researchers when dealing with arterial carotid imaging data is the registration of the geometrical structures between different imaging modalities or different timesteps. The use of the "Patient Position" DICOM field is not adequate to achieve accurate results due to the fact that the carotid artery is a relatively small structure and even imperceptible changes in patient position and/or direction make it difficult. While there is a wide range of simple/advanced registration techniques in the literature, there is a considerable number of studies which address the geometrical structure of the carotid artery without using any registration technique. On the other hand the existence of various registration techniques prohibits an objective comparison of the results using different registration techniques. In this paper we present a method for estimating the statistical significance that the choice of the registration technique has on the carotid geometry. One-Way Analysis of...

  5. A Comparison of FFD-based Nonrigid Registration and AAMs Applied to Myocardial Perfusion MRI

    DEFF Research Database (Denmark)

    Ólafsdóttir, Hildur; Stegmann, Mikkel Bille; Ersbøll, Bjarne Kjær;

    2006-01-01

    Little work has been done on comparing the performance of statistical model-based approaches and nonrigid registration algorithms. This paper deals with the qualitative and quantitative comparison of active appearance models (AAMs) and a nonrigid registration algorithm based on free......-form deformations (FFDs). AAMs are known to be much faster than nonrigid registration algorithms. On the other hand nonrigid registration algorithms are independent of a training set as required to build an AAM. To obtain a further comparison of the two methods, they are both applied to automatically register multi......-slice myocardial perfusion images. The images are acquired by magnetic resonance imaging, from infarct patients. A registration of these sequences is crucial for clinical practice, which currently is subjected to manual labor. In the paper, the pros and cons of the two registration approaches are discussed...

  6. Air breath control radiotherapy in severe insufficiency respiratory patients with N.S.C.L.: application for deformable registration method in thoracic radiotherapy; Radiotherapie avec blocage respiratoire pour les grands insuffisants respiratoires atteints d'un carcinome pulmonaire non a petites cellules (Protocole RESPI 2000): application a la modelisation des deformations d'organes par recalage deformable

    Energy Technology Data Exchange (ETDEWEB)

    Sarrut, D.; Pommier, P.; Carrie, C. [Centre Leon-Berard, Dept. de Radiotherapie, CREATIS, Unite CNRS 5515, Inserm 630, 69 - Lyon (France); Perol, D. [Centre Leon-Berard, Dept. de Biostatistique, 69 - Lyon (France)

    2006-11-15

    Purpose. Using deformable registration methods from a phase two clinical study of air breath control during radiotherapy in patients suffering from severe respiratory insufficiency and non-small cell lung carcinoma. Patients and methods, Between April 2002 and November 2005, 22 patients with severe respiratory insufficiency were treated with curative intent by conformal therapy combined with active breathing control. Results. After a mean of follow-up of 22 months, the local control rate is 28% and the method is feasible despite the severe respiratory insufficiency. However the overall survival is still poor due to metastatic widespread. For the second part of the study, the clinical protocol was also used for two studies using deformable registration methods. In the first study, a deformable registration method has been developed in order to register several breath-hold 3D CT of the same patient acquired at several days of interval. It allowed quantifying the inter-fraction breath-hold reproducibility by analysing the resulting displacement field. For 6 patients, the breath-hold was effective, while for 2 patients, motion greater than 10 mm were detected. The second study aimed to simulate 4D images from 3D breath-hold images. Developing an ad-hoc methodology based on the interpolation of 3D dense deformation fields performed it. The approach has been validated with expert selected landmarks, with accuracy lower than 3 mm. Conclusion. ABC is feasible, even in case of severe insufficiency respiratory syndrome but metastatic widespread disease is still a major challenge even with an acceptable local control rate without serious side effects: regarding the deformable registration method. Such artificial 4D images could allow decreasing the dose need to acquire a full 4D image, to simulate irregular breathing pattern and to be used for 4D dosimetry planning. (author)

  7. 21 CFR 710.6 - Notification of registrant; cosmetic product establishment registration number.

    Science.gov (United States)

    2010-04-01

    ... 21 Food and Drugs 7 2010-04-01 2010-04-01 false Notification of registrant; cosmetic product... OF HEALTH AND HUMAN SERVICES (CONTINUED) COSMETICS VOLUNTARY REGISTRATION OF COSMETIC PRODUCT ESTABLISHMENTS § 710.6 Notification of registrant; cosmetic product establishment registration number....

  8. 9 CFR 2.30 - Registration.

    Science.gov (United States)

    2010-01-01

    ... sign the registration form. (2) In any situation in which a school or department of a university or... 9 Animals and Animal Products 1 2010-01-01 2010-01-01 false Registration. 2.30 Section 2.30... WELFARE REGULATIONS Research Facilities § 2.30 Registration. (a) Requirements and procedures. (1)...

  9. Clinical trial registration in oral health journals.

    Science.gov (United States)

    Smaïl-Faugeron, V; Fron-Chabouis, H; Durieux, P

    2015-03-01

    Prospective registration of randomized controlled trials (RCTs) represents the best solution to reporting bias. The extent to which oral health journals have endorsed and complied with RCT registration is unknown. We identified journals publishing RCTs in dentistry, oral surgery, and medicine in the Journal Citation Reports. We classified journals into 3 groups: journals requiring or recommending trial registration, journals referring indirectly to registration, and journals providing no reference to registration. For the 5 journals with the highest 2012 impact factors in each group, we assessed whether RCTs with results published in 2013 had been registered. Of 78 journals examined, 32 (41%) required or recommended trial registration, 19 (24%) referred indirectly to registration, and 27 (35%) provided no reference to registration. We identified 317 RCTs with results published in the 15 selected journals in 2013. Overall, 73 (23%) were registered in a trial registry. Among those, 91% were registered retrospectively and 32% did not report trial registration in the published article. The proportion of trials registered was not significantly associated with editorial policies: 29% with results in journals that required or recommended registration, 15% in those that referred indirectly to registration, and 21% in those providing no reference to registration (P = 0.05). Less than one-quarter of RCTs with results published in a sample of oral health journals were registered with a public registry. Improvements are needed with respect to how journals inform and require their authors to register their trials.

  10. SIP软交换系统的注册服务%Registrations of SIP softswitch system

    Institute of Scientific and Technical Information of China (English)

    朱剑锋

    2014-01-01

    针对SIP软交换系统的注册服务,提出了SIP分机信息与注册信息相结合方法,实现了SIP用户终端认证与注册服务,并进一步的给出了注册参数的优化配置。%Proposing a new method that combining SIP extension information with registration information to Registration the SIP softswitch system, achieving SIP phone certification and registration services, and further gives the optimal allocation of registration parameters.

  11. Agile multi-scale decompositions for automatic image registration

    Science.gov (United States)

    Murphy, James M.; Leija, Omar Navarro; Le Moigne, Jacqueline

    2016-05-01

    In recent works, the first and third authors developed an automatic image registration algorithm based on a multiscale hybrid image decomposition with anisotropic shearlets and isotropic wavelets. This prototype showed strong performance, improving robustness over registration with wavelets alone. However, this method imposed a strict hierarchy on the order in which shearlet and wavelet features were used in the registration process, and also involved an unintegrated mixture of MATLAB and C code. In this paper, we introduce a more agile model for generating features, in which a flexible and user-guided mix of shearlet and wavelet features are computed. Compared to the previous prototype, this method introduces a flexibility to the order in which shearlet and wavelet features are used in the registration process. Moreover, the present algorithm is now fully coded in C, making it more efficient and portable than the mixed MATLAB and C prototype. We demonstrate the versatility and computational efficiency of this approach by performing registration experiments with the fully-integrated C algorithm. In particular, meaningful timing studies can now be performed, to give a concrete analysis of the computational costs of the flexible feature extraction. Examples of synthetically warped and real multi-modal images are analyzed.

  12. Quicksilver: Fast predictive image registration - A deep learning approach.

    Science.gov (United States)

    Yang, Xiao; Kwitt, Roland; Styner, Martin; Niethammer, Marc

    2017-07-11

    This paper introduces Quicksilver, a fast deformable image registration method. Quicksilver registration for image-pairs works by patch-wise prediction of a deformation model based directly on image appearance. A deep encoder-decoder network is used as the prediction model. While the prediction strategy is general, we focus on predictions for the Large Deformation Diffeomorphic Metric Mapping (LDDMM) model. Specifically, we predict the momentum-parameterization of LDDMM, which facilitates a patch-wise prediction strategy while maintaining the theoretical properties of LDDMM, such as guaranteed diffeomorphic mappings for sufficiently strong regularization. We also provide a probabilistic version of our prediction network which can be sampled during the testing time to calculate uncertainties in the predicted deformations. Finally, we introduce a new correction network which greatly increases the prediction accuracy of an already existing prediction network. We show experimental results for uni-modal atlas-to-image as well as uni-/multi-modal image-to-image registrations. These experiments demonstrate that our method accurately predicts registrations obtained by numerical optimization, is very fast, achieves state-of-the-art registration results on four standard validation datasets, and can jointly learn an image similarity measure. Quicksilver is freely available as an open-source software. Copyright © 2017 Elsevier Inc. All rights reserved.

  13. Combined registration and motion correction of longitudinal retinal OCT data

    Science.gov (United States)

    Lang, Andrew; Carass, Aaron; Al-Louzi, Omar; Bhargava, Pavan; Solomon, Sharon D.; Calabresi, Peter A.; Prince, Jerry L.

    2016-03-01

    Optical coherence tomography (OCT) has become an important modality for examination of the eye. To measure layer thicknesses in the retina, automated segmentation algorithms are often used, producing accurate and reliable measurements. However, subtle changes over time are difficult to detect since the magnitude of the change can be very small. Thus, tracking disease progression over short periods of time is difficult. Additionally, unstable eye position and motion alter the consistency of these measurements, even in healthy eyes. Thus, both registration and motion correction are important for processing longitudinal data of a specific patient. In this work, we propose a method to jointly do registration and motion correction. Given two scans of the same patient, we initially extract blood vessel points from a fundus projection image generated on the OCT data and estimate point correspondences. Due to saccadic eye movements during the scan, motion is often very abrupt, producing a sparse set of large displacements between successive B-scan images. Thus, we use lasso regression to estimate the movement of each image. By iterating between this regression and a rigid point-based registration, we are able to simultaneously align and correct the data. With longitudinal data from 39 healthy control subjects, our method improves the registration accuracy by 43% compared to simple alignment to the fovea and 8% when using point-based registration only. We also show improved consistency of repeated total retina thickness measurements.

  14. Significantly reducing registration time in IGRT using graphics processing units

    DEFF Research Database (Denmark)

    Noe, Karsten Østergaard; Denis de Senneville, Baudouin; Tanderup, Kari

    2008-01-01

    Purpose/Objective For online IGRT, rapid image processing is needed. Fast parallel computations using graphics processing units (GPUs) have recently been made more accessible through general purpose programming interfaces. We present a GPU implementation of the Horn and Schunck method...... respiration phases in a free breathing volunteer and 41 anatomical landmark points in each image series. The registration method used is a multi-resolution GPU implementation of the 3D Horn and Schunck algorithm. It is based on the CUDA framework from Nvidia. Results On an Intel Core 2 CPU at 2.4GHz each...... registration took 30 minutes. On an Nvidia Geforce 8800GTX GPU in the same machine this registration took 37 seconds, making the GPU version 48.7 times faster. The nine image series of different respiration phases were registered to the same reference image (full inhale). Accuracy was evaluated on landmark...

  15. Hue-assisted automatic registration of color point clouds

    Directory of Open Access Journals (Sweden)

    Hao Men

    2014-10-01

    Full Text Available This paper describes a variant of the extended Gaussian image based registration algorithm for point clouds with surface color information. The method correlates the distributions of surface normals for rotational alignment and grid occupancy for translational alignment with hue filters applied during the construction of surface normal histograms and occupancy grids. In this method, the size of the point cloud is reduced with a hue-based down sampling that is independent of the point sample density or local geometry. Experimental results show that use of the hue filters increases the registration speed and improves the registration accuracy. Coarse rigid transformations determined in this step enable fine alignment with dense, unfiltered point clouds or using Ite