Directory of Open Access Journals (Sweden)
Richard Shoemaker
2014-04-01
Full Text Available Establishing causality has been a problem throughout history of philosophy of science. This paper discusses the philosophy of causal inference along the different school of thoughts and methods: Rationalism, Empiricism, Inductive method, Hypothetical deductive method with pros and cons. The article it starting from the Problem of Hume, also close to the positions of Russell, Carnap, Popper and Kuhn to better understand the modern interpretation and implications of causal inference in epidemiological research.
Causal inference in econometrics
Kreinovich, Vladik; Sriboonchitta, Songsak
2016-01-01
This book is devoted to the analysis of causal inference which is one of the most difficult tasks in data analysis: when two phenomena are observed to be related, it is often difficult to decide whether one of them causally influences the other one, or whether these two phenomena have a common cause. This analysis is the main focus of this volume. To get a good understanding of the causal inference, it is important to have models of economic phenomena which are as accurate as possible. Because of this need, this volume also contains papers that use non-traditional economic models, such as fuzzy models and models obtained by using neural networks and data mining techniques. It also contains papers that apply different econometric models to analyze real-life economic dependencies.
Inferring deterministic causal relations
Daniusis, Povilas; Mooij, Joris; Zscheischler, Jakob; Steudel, Bastian; Zhang, Kun; Schoelkopf, Bernhard
2012-01-01
We consider two variables that are related to each other by an invertible function. While it has previously been shown that the dependence structure of the noise can provide hints to determine which of the two variables is the cause, we presently show that even in the deterministic (noise-free) case, there are asymmetries that can be exploited for causal inference. Our method is based on the idea that if the function and the probability density of the cause are chosen independently, then the distribution of the effect will, in a certain sense, depend on the function. We provide a theoretical analysis of this method, showing that it also works in the low noise regime, and link it to information geometry. We report strong empirical results on various real-world data sets from different domains.
Causal Inference and Developmental Psychology
Foster, E. Michael
2010-01-01
Causal inference is of central importance to developmental psychology. Many key questions in the field revolve around improving the lives of children and their families. These include identifying risk factors that if manipulated in some way would foster child development. Such a task inherently involves causal inference: One wants to know whether…
Causal Inference and Developmental Psychology
Foster, E. Michael
2010-01-01
Causal inference is of central importance to developmental psychology. Many key questions in the field revolve around improving the lives of children and their families. These include identifying risk factors that if manipulated in some way would foster child development. Such a task inherently involves causal inference: One wants to know whether…
Causal inference based on counterfactuals
Directory of Open Access Journals (Sweden)
Höfler M
2005-09-01
Full Text Available Abstract Background The counterfactual or potential outcome model has become increasingly standard for causal inference in epidemiological and medical studies. Discussion This paper provides an overview on the counterfactual and related approaches. A variety of conceptual as well as practical issues when estimating causal effects are reviewed. These include causal interactions, imperfect experiments, adjustment for confounding, time-varying exposures, competing risks and the probability of causation. It is argued that the counterfactual model of causal effects captures the main aspects of causality in health sciences and relates to many statistical procedures. Summary Counterfactuals are the basis of causal inference in medicine and epidemiology. Nevertheless, the estimation of counterfactual differences pose several difficulties, primarily in observational studies. These problems, however, reflect fundamental barriers only when learning from observations, and this does not invalidate the counterfactual concept.
Causal inference in public health.
Glass, Thomas A; Goodman, Steven N; Hernán, Miguel A; Samet, Jonathan M
2013-01-01
Causal inference has a central role in public health; the determination that an association is causal indicates the possibility for intervention. We review and comment on the long-used guidelines for interpreting evidence as supporting a causal association and contrast them with the potential outcomes framework that encourages thinking in terms of causes that are interventions. We argue that in public health this framework is more suitable, providing an estimate of an action's consequences rather than the less precise notion of a risk factor's causal effect. A variety of modern statistical methods adopt this approach. When an intervention cannot be specified, causal relations can still exist, but how to intervene to change the outcome will be unclear. In application, the often-complex structure of causal processes needs to be acknowledged and appropriate data collected to study them. These newer approaches need to be brought to bear on the increasingly complex public health challenges of our globalized world.
An introduction to causal inference.
Pearl, Judea
2010-02-26
This paper summarizes recent advances in causal inference and underscores the paradigmatic shifts that must be undertaken in moving from traditional statistical analysis to causal analysis of multivariate data. Special emphasis is placed on the assumptions that underlie all causal inferences, the languages used in formulating those assumptions, the conditional nature of all causal and counterfactual claims, and the methods that have been developed for the assessment of such claims. These advances are illustrated using a general theory of causation based on the Structural Causal Model (SCM) described in Pearl (2000a), which subsumes and unifies other approaches to causation, and provides a coherent mathematical foundation for the analysis of causes and counterfactuals. In particular, the paper surveys the development of mathematical tools for inferring (from a combination of data and assumptions) answers to three types of causal queries: those about (1) the effects of potential interventions, (2) probabilities of counterfactuals, and (3) direct and indirect effects (also known as "mediation"). Finally, the paper defines the formal and conceptual relationships between the structural and potential-outcome frameworks and presents tools for a symbiotic analysis that uses the strong features of both. The tools are demonstrated in the analyses of mediation, causes of effects, and probabilities of causation.
An Introduction to Causal Inference
2009-11-02
legitimize causal inference, has removed causation from its natural habitat, and distorted its face beyond recognition. This exclusivist attitude is...In contrast, when the mediation problem is approached from an exclusivist potential-outcome viewpoint, void of the structural guidance of Eq. (28
Causal inference in obesity research.
Franks, P W; Atabaki-Pasdar, N
2017-03-01
Obesity is a risk factor for a plethora of severe morbidities and premature death. Most supporting evidence comes from observational studies that are prone to chance, bias and confounding. Even data on the protective effects of weight loss from randomized controlled trials will be susceptible to confounding and bias if treatment assignment cannot be masked, which is usually the case with lifestyle and surgical interventions. Thus, whilst obesity is widely considered the major modifiable risk factor for many chronic diseases, its causes and consequences are often difficult to determine. Addressing this is important, as the prevention and treatment of any disease requires that interventions focus on causal risk factors. Disease prediction, although not dependent on knowing the causes, is nevertheless enhanced by such knowledge. Here, we provide an overview of some of the barriers to causal inference in obesity research and discuss analytical approaches, such as Mendelian randomization, that can help to overcome these obstacles. In a systematic review of the literature in this field, we found: (i) probable causal relationships between adiposity and bone health/disease, cancers (colorectal, lung and kidney cancers), cardiometabolic traits (blood pressure, fasting insulin, inflammatory markers and lipids), uric acid concentrations, coronary heart disease and venous thrombosis (in the presence of pulmonary embolism), (ii) possible causal relationships between adiposity and gray matter volume, depression and common mental disorders, oesophageal cancer, macroalbuminuria, end-stage renal disease, diabetic kidney disease, nuclear cataract and gall stone disease, and (iii) no evidence for causal relationships between adiposity and Alzheimer's disease, pancreatic cancer, venous thrombosis (in the absence of pulmonary embolism), liver function and periodontitis.
Causal inference in economics and marketing.
Varian, Hal R
2016-07-05
This is an elementary introduction to causal inference in economics written for readers familiar with machine learning methods. The critical step in any causal analysis is estimating the counterfactual-a prediction of what would have happened in the absence of the treatment. The powerful techniques used in machine learning may be useful for developing better estimates of the counterfactual, potentially improving causal inference.
Causal inference in economics and marketing
Varian, Hal R.
2016-01-01
This is an elementary introduction to causal inference in economics written for readers familiar with machine learning methods. The critical step in any causal analysis is estimating the counterfactual—a prediction of what would have happened in the absence of the treatment. The powerful techniques used in machine learning may be useful for developing better estimates of the counterfactual, potentially improving causal inference. PMID:27382144
Campbell's and Rubin's Perspectives on Causal Inference
West, Stephen G.; Thoemmes, Felix
2010-01-01
Donald Campbell's approach to causal inference (D. T. Campbell, 1957; W. R. Shadish, T. D. Cook, & D. T. Campbell, 2002) is widely used in psychology and education, whereas Donald Rubin's causal model (P. W. Holland, 1986; D. B. Rubin, 1974, 2005) is widely used in economics, statistics, medicine, and public health. Campbell's approach focuses on…
Campbell's and Rubin's Perspectives on Causal Inference
West, Stephen G.; Thoemmes, Felix
2010-01-01
Donald Campbell's approach to causal inference (D. T. Campbell, 1957; W. R. Shadish, T. D. Cook, & D. T. Campbell, 2002) is widely used in psychology and education, whereas Donald Rubin's causal model (P. W. Holland, 1986; D. B. Rubin, 1974, 2005) is widely used in economics, statistics, medicine, and public health. Campbell's approach focuses on…
"Comments on Slavin": Synthesizing Causal Inferences
Briggs, Derek C.
2008-01-01
When causal inferences are to be synthesized across multiple studies, efforts to establish the magnitude of a causal effect should be balanced by an effort to evaluate the generalizability of the effect. The evaluation of generalizability depends on two factors that are given little attention in current syntheses: construct validity and external…
Quasi-Experimental Designs for Causal Inference
Kim, Yongnam; Steiner, Peter
2016-01-01
When randomized experiments are infeasible, quasi-experimental designs can be exploited to evaluate causal treatment effects. The strongest quasi-experimental designs for causal inference are regression discontinuity designs, instrumental variable designs, matching and propensity score designs, and comparative interrupted time series designs. This…
Introductive remarks on causal inference
Directory of Open Access Journals (Sweden)
Silvana A. Romio
2013-05-01
Full Text Available One of the more challenging issues in epidemiological research is being able to provide an unbiased estimate of the causal exposure-disease effect, to assess the possible etiological mechanisms and the implication for public health. A major source of bias is confounding, which can spuriously create or mask the causal relationship. In the last ten years, methodological research has been developed to better de_ne the concept of causation in epidemiology and some important achievements have resulted in new statistical models. In this review, we aim to show how a technique the well known by statisticians, i.e. standardization, can be seen as a method to estimate causal e_ects, equivalent under certain conditions to the inverse probability treatment weight procedure.
Confounding Equivalence in Causal Inference
Pearl, Judea
2012-01-01
The paper provides a simple test for deciding, from a given causal diagram, whether two sets of variables have the same bias-reducing potential under adjustment. The test re- quires that one of the following two condi- tions holds: either (1) both sets are admis- sible (i.e., satisfy the back-door criterion) or (2) the Markov boundaries surrounding the manipulated variable(s) are identical in both sets. Applications to covariate selection and model testing are discussed.
How prescriptive norms influence causal inferences.
Samland, Jana; Waldmann, Michael R
2016-11-01
Recent experimental findings suggest that prescriptive norms influence causal inferences. The cognitive mechanism underlying this finding is still under debate. We compare three competing theories: The culpable control model of blame argues that reasoners tend to exaggerate the causal influence of norm-violating agents, which should lead to relatively higher causal strength estimates for these agents. By contrast, the counterfactual reasoning account of causal selection assumes that norms do not alter the representation of the causal model, but rather later causal selection stages. According to this view, reasoners tend to preferentially consider counterfactual states of abnormal rather than normal factors, which leads to the choice of the abnormal factor in a causal selection task. A third view, the accountability hypothesis, claims that the effects of prescriptive norms are generated by the ambiguity of the causal test question. Asking whether an agent is a cause can be understood as a request to assess her causal contribution but also her moral accountability. According to this theory norm effects on causal selection are mediated by accountability judgments that are not only sensitive to the abnormality of behavior but also to mitigating factors, such as intentionality and knowledge of norms. Five experiments are presented that favor the accountability account over the two alternative theories.
Inferring causality from noisy time series data
DEFF Research Database (Denmark)
Mønster, Dan; Fusaroli, Riccardo; Tylén, Kristian;
2016-01-01
Convergent Cross-Mapping (CCM) has shown high potential to perform causal inference in the absence of models. We assess the strengths and weaknesses of the method by varying coupling strength and noise levels in coupled logistic maps. We find that CCM fails to infer accurate coupling strength...... and even causality direction in synchronized time-series and in the presence of intermediate coupling. We find that the presence of noise deterministically reduces the level of cross-mapping fidelity, while the convergence rate exhibits higher levels of robustness. Finally, we propose that controlled noise...... injections in intermediate-to-strongly coupled systems could enable more accurate causal inferences. Given the inherent noisy nature of real-world systems, our findings enable a more accurate evaluation of CCM applicability and advance suggestions on how to overcome its weaknesses....
Causal inference, probability theory, and graphical insights.
Baker, Stuart G
2013-11-10
Causal inference from observational studies is a fundamental topic in biostatistics. The causal graph literature typically views probability theory as insufficient to express causal concepts in observational studies. In contrast, the view here is that probability theory is a desirable and sufficient basis for many topics in causal inference for the following two reasons. First, probability theory is generally more flexible than causal graphs: Besides explaining such causal graph topics as M-bias (adjusting for a collider) and bias amplification and attenuation (when adjusting for instrumental variable), probability theory is also the foundation of the paired availability design for historical controls, which does not fit into a causal graph framework. Second, probability theory is the basis for insightful graphical displays including the BK-Plot for understanding Simpson's paradox with a binary confounder, the BK2-Plot for understanding bias amplification and attenuation in the presence of an unobserved binary confounder, and the PAD-Plot for understanding the principal stratification component of the paired availability design.
On Measurement Bias in Causal Inference
Pearl, Judea
2012-01-01
This paper addresses the problem of measurement errors in causal inference and highlights several algebraic and graphical methods for eliminating systematic bias induced by such errors. In particulars, the paper discusses the control of partially observable confounders in parametric and non parametric models and the computational problem of obtaining bias-free effect estimates in such models.
A Probability Index of the Robustness of a Causal Inference
Pan, Wei; Frank, Kenneth A.
2003-01-01
Causal inference is an important, controversial topic in the social sciences, where it is difficult to conduct experiments or measure and control for all confounding variables. To address this concern, the present study presents a probability index to assess the robustness of a causal inference to the impact of a confounding variable. The…
Statistical causal inferences and their applications in public health research
Wu, Pan; Chen, Ding-Geng
2016-01-01
This book compiles and presents new developments in statistical causal inference. The accompanying data and computer programs are publicly available so readers may replicate the model development and data analysis presented in each chapter. In this way, methodology is taught so that readers may implement it directly. The book brings together experts engaged in causal inference research to present and discuss recent issues in causal inference methodological development. This is also a timely look at causal inference applied to scenarios that range from clinical trials to mediation and public health research more broadly. In an academic setting, this book will serve as a reference and guide to a course in causal inference at the graduate level (Master's or Doctorate). It is particularly relevant for students pursuing degrees in Statistics, Biostatistics and Computational Biology. Researchers and data analysts in public health and biomedical research will also find this book to be an important reference.
Toddlers infer higher-order relational principles in causal learning.
Walker, Caren M; Gopnik, Alison
2014-01-01
Children make inductive inferences about the causal properties of individual objects from a very young age. When can they infer higher-order relational properties? In three experiments, we examined 18- to 30-month-olds' relational inferences in a causal task. Results suggest that at this age, children are able to infer a higher-order relational causal principle from just a few observations and use this inference to guide their own subsequent actions and bring about a novel causal outcome. Moreover, the children passed a revised version of the relational match-to-sample task that has proven very difficult for nonhuman primates. The findings are considered in light of their implications for understanding the nature of relational and causal reasoning, and their evolutionary origins.
Essays on Causal Inference for Public Policy
Zajonc, Tristan
2012-01-01
Effective policymaking requires understanding the causal effects of competing proposals. Relevant causal quantities include proposals' expected effect on different groups of recipients, the impact of policies over time, the potential trade-offs between competing objectives, and, ultimately, the optimal policy. This dissertation studies causal…
Methods for causal inference from gene perturbation experiments and validation
DEFF Research Database (Denmark)
Meinshausen, Nicolai; Hauser, Alain; Mooij, Joris M
2016-01-01
Inferring causal effects from observational and interventional data is a highly desirable but ambitious goal. Many of the computational and statistical methods are plagued by fundamental identifiability issues, instability, and unreliable performance, especially for large-scale systems with many...
Non-parametric causal inference for bivariate time series
McCracken, James M
2015-01-01
We introduce new quantities for exploratory causal inference between bivariate time series. The quantities, called penchants and leanings, are computationally straightforward to apply, follow directly from assumptions of probabilistic causality, do not depend on any assumed models for the time series generating process, and do not rely on any embedding procedures; these features may provide a clearer interpretation of the results than those from existing time series causality tools. The penchant and leaning are computed based on a structured method for computing probabilities.
From Blickets to Synapses: Inferring Temporal Causal Networks by Observation
Fernando, Chrisantha
2013-01-01
How do human infants learn the causal dependencies between events? Evidence suggests that this remarkable feat can be achieved by observation of only a handful of examples. Many computational models have been produced to explain how infants perform causal inference without explicit teaching about statistics or the scientific method. Here, we…
The Role of Causal Models in Analogical Inference
Lee, Hee Seung; Holyoak, Keith J.
2008-01-01
Computational models of analogy have assumed that the strength of an inductive inference about the target is based directly on similarity of the analogs and in particular on shared higher order relations. In contrast, work in philosophy of science suggests that analogical inference is also guided by causal models of the source and target. In 3…
Restrictions for the causal inferences in an interferometric system
Rossi, R.
2017-07-01
Causal discovery algorithms allow for the inference of causal structures from probabilistic relations of random variables. A natural field for the application of this tool is quantum mechanics, where a long-standing debate about the role of causality in the theory has flourished since its early days. In this paper, a causal discovery algorithm is applied in the search for causal models to describe a quantum version of Wheeler's delayed-choice experiment. The outputs explicitly show the restrictions for the introduction of classical concepts in this system. The exclusion of models with two hidden variables is one of them. A consequence of such a constraint is the impossibility to construct a causal model that avoids superluminal causation and assumes an objective view of the wave and particle properties simultaneously.
Confounding and Collapsibility in Causal Inference
Greenland, Sander; Robins, James M; Pearl, Judea
1999-01-01
Consideration of confounding is fundamental to the design and analysis of studies of causal effects. Yet, apart from confounding in experimental designs, the topic is given little or no discussion in most statistics texts. We here provide an overview of confounding and related concepts based on a counterfactual model for causation. Special attention is given to definitions of confounding, problems in control of confounding, the relation of confounding to exchangeability and ...
God Does Not Play Dice: Causal Determinism and Preschoolers' Causal Inferences
Schulz, Laura E.; Sommerville, Jessica
2006-01-01
Three studies investigated children's belief in causal determinism. If children are determinists, they should infer unobserved causes whenever observed causes appear to act stochastically. In Experiment 1, 4-year-olds saw a stochastic generative cause and inferred the existence of an unobserved inhibitory cause. Children traded off inferences…
Inferring connectivity in networked dynamical systems: Challenges using Granger causality
Lusch, Bethany; Maia, Pedro D.; Kutz, J. Nathan
2016-09-01
Determining the interactions and causal relationships between nodes in an unknown networked dynamical system from measurement data alone is a challenging, contemporary task across the physical, biological, and engineering sciences. Statistical methods, such as the increasingly popular Granger causality, are being broadly applied for data-driven discovery of connectivity in fields from economics to neuroscience. A common version of the algorithm is called pairwise-conditional Granger causality, which we systematically test on data generated from a nonlinear model with known causal network structure. Specifically, we simulate networked systems of Kuramoto oscillators and use the Multivariate Granger Causality Toolbox to discover the underlying coupling structure of the system. We compare the inferred results to the original connectivity for a wide range of parameters such as initial conditions, connection strengths, community structures, and natural frequencies. Our results show a significant systematic disparity between the original and inferred network, unless the true structure is extremely sparse or dense. Specifically, the inferred networks have significant discrepancies in the number of edges and the eigenvalues of the connectivity matrix, demonstrating that they typically generate dynamics which are inconsistent with the ground truth. We provide a detailed account of the dynamics for the Erdős-Rényi network model due to its importance in random graph theory and network science. We conclude that Granger causal methods for inferring network structure are highly suspect and should always be checked against a ground truth model. The results also advocate the need to perform such comparisons with any network inference method since the inferred connectivity results appear to have very little to do with the ground truth system.
How difficult is inference of mammalian causal gene regulatory networks?
Directory of Open Access Journals (Sweden)
Djordje Djordjevic
Full Text Available Gene regulatory networks (GRNs play a central role in systems biology, especially in the study of mammalian organ development. One key question remains largely unanswered: Is it possible to infer mammalian causal GRNs using observable gene co-expression patterns alone? We assembled two mouse GRN datasets (embryonic tooth and heart and matching microarray gene expression profiles to systematically investigate the difficulties of mammalian causal GRN inference. The GRNs were assembled based on > 2,000 pieces of experimental genetic perturbation evidence from manually reading > 150 primary research articles. Each piece of perturbation evidence records the qualitative change of the expression of one gene following knock-down or over-expression of another gene. Our data have thorough annotation of tissue types and embryonic stages, as well as the type of regulation (activation, inhibition and no effect, which uniquely allows us to estimate both sensitivity and specificity of the inference of tissue specific causal GRN edges. Using these unprecedented datasets, we found that gene co-expression does not reliably distinguish true positive from false positive interactions, making inference of GRN in mammalian development very difficult. Nonetheless, if we have expression profiling data from genetic or molecular perturbation experiments, such as gene knock-out or signalling stimulation, it is possible to use the set of differentially expressed genes to recover causal regulatory relationships with good sensitivity and specificity. Our result supports the importance of using perturbation experimental data in causal network reconstruction. Furthermore, we showed that causal gene regulatory relationship can be highly cell type or developmental stage specific, suggesting the importance of employing expression profiles from homogeneous cell populations. This study provides essential datasets and empirical evidence to guide the development of new GRN inference
How difficult is inference of mammalian causal gene regulatory networks?
Djordjevic, Djordje; Yang, Andrian; Zadoorian, Armella; Rungrugeecharoen, Kevin; Ho, Joshua W K
2014-01-01
Gene regulatory networks (GRNs) play a central role in systems biology, especially in the study of mammalian organ development. One key question remains largely unanswered: Is it possible to infer mammalian causal GRNs using observable gene co-expression patterns alone? We assembled two mouse GRN datasets (embryonic tooth and heart) and matching microarray gene expression profiles to systematically investigate the difficulties of mammalian causal GRN inference. The GRNs were assembled based on > 2,000 pieces of experimental genetic perturbation evidence from manually reading > 150 primary research articles. Each piece of perturbation evidence records the qualitative change of the expression of one gene following knock-down or over-expression of another gene. Our data have thorough annotation of tissue types and embryonic stages, as well as the type of regulation (activation, inhibition and no effect), which uniquely allows us to estimate both sensitivity and specificity of the inference of tissue specific causal GRN edges. Using these unprecedented datasets, we found that gene co-expression does not reliably distinguish true positive from false positive interactions, making inference of GRN in mammalian development very difficult. Nonetheless, if we have expression profiling data from genetic or molecular perturbation experiments, such as gene knock-out or signalling stimulation, it is possible to use the set of differentially expressed genes to recover causal regulatory relationships with good sensitivity and specificity. Our result supports the importance of using perturbation experimental data in causal network reconstruction. Furthermore, we showed that causal gene regulatory relationship can be highly cell type or developmental stage specific, suggesting the importance of employing expression profiles from homogeneous cell populations. This study provides essential datasets and empirical evidence to guide the development of new GRN inference methods for
Explanation in causal inference methods for mediation and interaction
VanderWeele, Tyler
2015-01-01
A comprehensive examination of methods for mediation and interaction, VanderWeele's book is the first to approach this topic from the perspective of causal inference. Numerous software tools are provided, and the text is both accessible and easy to read, with examples drawn from diverse fields. The result is an essential reference for anyone conducting empirical research in the biomedical or social sciences.
Causal inference for complex longitudinal data: the continuous case
Gill, R.D.; Robins, J.M.
2001-01-01
We extend Robins theory of causal inference for complex longitudinal data to the case of continuously varying as opposed to discrete covariates and treatments In particular we establish versions of the key results of the discrete theory the gcomputation formula and a collection of powerful character
Causal inference in complex longitudinal models: the continuous case
Robins, J.M.
2001-01-01
We extend Robins' theory of causal inference for complex longitudinal data to the case of continuously varying as opposed to discrete covariates and treatments. In particular we establish versions of the key results of the discrete theory: the g-computation formula and a collection of powerful chara
On the Inference of Functional Circadian Networks Using Granger Causality.
Pourzanjani, Arya; Herzog, Erik D; Petzold, Linda R
2015-01-01
Being able to infer one way direct connections in an oscillatory network such as the suprachiastmatic nucleus (SCN) of the mammalian brain using time series data is difficult but crucial to understanding network dynamics. Although techniques have been developed for inferring networks from time series data, there have been no attempts to adapt these techniques to infer directional connections in oscillatory time series, while accurately distinguishing between direct and indirect connections. In this paper an adaptation of Granger Causality is proposed that allows for inference of circadian networks and oscillatory networks in general called Adaptive Frequency Granger Causality (AFGC). Additionally, an extension of this method is proposed to infer networks with large numbers of cells called LASSO AFGC. The method was validated using simulated data from several different networks. For the smaller networks the method was able to identify all one way direct connections without identifying connections that were not present. For larger networks of up to twenty cells the method shows excellent performance in identifying true and false connections; this is quantified by an area-under-the-curve (AUC) 96.88%. We note that this method like other Granger Causality-based methods, is based on the detection of high frequency signals propagating between cell traces. Thus it requires a relatively high sampling rate and a network that can propagate high frequency signals.
On the Inference of Functional Circadian Networks Using Granger Causality
Pourzanjani, Arya; Herzog, Erik D.; Petzold, Linda R.
2015-01-01
Being able to infer one way direct connections in an oscillatory network such as the suprachiastmatic nucleus (SCN) of the mammalian brain using time series data is difficult but crucial to understanding network dynamics. Although techniques have been developed for inferring networks from time series data, there have been no attempts to adapt these techniques to infer directional connections in oscillatory time series, while accurately distinguishing between direct and indirect connections. In this paper an adaptation of Granger Causality is proposed that allows for inference of circadian networks and oscillatory networks in general called Adaptive Frequency Granger Causality (AFGC). Additionally, an extension of this method is proposed to infer networks with large numbers of cells called LASSO AFGC. The method was validated using simulated data from several different networks. For the smaller networks the method was able to identify all one way direct connections without identifying connections that were not present. For larger networks of up to twenty cells the method shows excellent performance in identifying true and false connections; this is quantified by an area-under-the-curve (AUC) 96.88%. We note that this method like other Granger Causality-based methods, is based on the detection of high frequency signals propagating between cell traces. Thus it requires a relatively high sampling rate and a network that can propagate high frequency signals. PMID:26413748
Granger causality vs. dynamic Bayesian network inference: a comparative study
Directory of Open Access Journals (Sweden)
Feng Jianfeng
2009-04-01
Full Text Available Abstract Background In computational biology, one often faces the problem of deriving the causal relationship among different elements such as genes, proteins, metabolites, neurons and so on, based upon multi-dimensional temporal data. Currently, there are two common approaches used to explore the network structure among elements. One is the Granger causality approach, and the other is the dynamic Bayesian network inference approach. Both have at least a few thousand publications reported in the literature. A key issue is to choose which approach is used to tackle the data, in particular when they give rise to contradictory results. Results In this paper, we provide an answer by focusing on a systematic and computationally intensive comparison between the two approaches on both synthesized and experimental data. For synthesized data, a critical point of the data length is found: the dynamic Bayesian network outperforms the Granger causality approach when the data length is short, and vice versa. We then test our results in experimental data of short length which is a common scenario in current biological experiments: it is again confirmed that the dynamic Bayesian network works better. Conclusion When the data size is short, the dynamic Bayesian network inference performs better than the Granger causality approach; otherwise the Granger causality approach is better.
Research designs and making causal inferences from health care studies.
Flannelly, Kevin J; Jankowski, Katherine R B
2014-01-01
This article summarizes the major types of research designs used in healthcare research, including experimental, quasi-experimental, and observational studies. Observational studies are divided into survey studies (descriptive and correlational studies), case-studies and analytic studies, the last of which are commonly used in epidemiology: case-control, retrospective cohort, and prospective cohort studies. Similarities and differences among the research designs are described and the relative strength of evidence they provide is discussed. Emphasis is placed on five criteria for drawing causal inferences that are derived from the writings of the philosopher John Stuart Mill, especially his methods or canons. The application of the criteria to experimentation is explained. Particular attention is given to the degree to which different designs meet the five criteria for making causal inferences. Examples of specific studies that have used various designs in chaplaincy research are provided.
SALZA: Soft algorithmic complexity estimates for clustering and causality inference
Revolle, Marion; François, Cayre; Bihan, Nicolas le
2016-01-01
A complete set of practical estimators for the conditional, simple and joint algorihmic complexities is presented, from which a semi-metric is derived. Also, new directed information estimators are proposed that are applied to causality inference on Directed Acyclic Graphs. The performances of these estimators are investigated and shown to compare well with respect to the state-of-the-art Normalized Compression Distance (NCD).
Inference and coherence in causal-based artifact categorization.
Puebla, Guillermo; Chaigneau, Sergio E
2014-01-01
In four experiments, we tested conditions under which artifact concepts support inference and coherence in causal categorization. In all four experiments, participants categorized scenarios in which we systematically varied information about artifacts' associated design history, physical structure, user intention, user action and functional outcome, and where each property could be specified as intact, compromised or not observed. Consistently across experiments, when participants received complete information (i.e., when all properties were observed), they categorized based on individual properties and did not show evidence of using coherence to categorize. In contrast, when the state of some property was not observed, participants gave evidence of using available information to infer the state of the unobserved property, which increased the value of the available information for categorization. Our data offers answers to longstanding questions regarding artifact categorization, such as whether there are underlying causal models for artifacts, which properties are part of them, whether design history is an artifact's causal essence, and whether physical appearance or functional outcome is the most central artifact property.
Who caused it? Interpersonal causal inferences in young children.
Vikan, A; Skevik, H
1992-01-01
Three experiments were designed to test 4- and 6-year-old children's causal inferences in interpersonal settings where emotions (glad, angry, and sad) were effect responses. The results showed that emotion and orientation (towards or away from) were central cues, and that sex and age also were used to some extent. Cues related to regularity philosophic notions (e.g. David Hume), such as contiguity in time and space, and time order of cause and effect were little used by comparison. The results raise questions about the basic role attributed to regularity cues both by philosophers and psychologists, and suggest a multiple cue contribution rather than a basic cue generalization approach to causal cognition development.
Causal inference and the data-fusion problem.
Bareinboim, Elias; Pearl, Judea
2016-07-05
We review concepts, principles, and tools that unify current approaches to causal analysis and attend to new challenges presented by big data. In particular, we address the problem of data fusion-piecing together multiple datasets collected under heterogeneous conditions (i.e., different populations, regimes, and sampling methods) to obtain valid answers to queries of interest. The availability of multiple heterogeneous datasets presents new opportunities to big data analysts, because the knowledge that can be acquired from combined data would not be possible from any individual source alone. However, the biases that emerge in heterogeneous environments require new analytical tools. Some of these biases, including confounding, sampling selection, and cross-population biases, have been addressed in isolation, largely in restricted parametric models. We here present a general, nonparametric framework for handling these biases and, ultimately, a theoretical solution to the problem of data fusion in causal inference tasks.
The texture of causal construals: Domain-specific biases shape causal inferences from discourse.
Strickland, Brent; Silver, Ike; Keil, Frank C
2017-04-01
We conducted five sets of experiments asking whether psychological and physical events are construed in broadly different manners concerning the underlying textures of their causes. In Experiments 1a-1d, we found a robust tendency to estimate fewer causes (but not effects) for psychological than for physical events; Experiment 2 showed a similar pattern of results when participants were asked to generate hypothetical causes and effects; Experiment 3 revealed a greater tendency to ascribe linear chains of causes (but not effects) to physical events; Experiment 4 showed that the expectation of linear chains was related to intuitions about deterministic processes; and Experiment 5 showed that simply framing a given ambiguous event in psychological versus physical terms is sufficient to induce changes in the patterns of causal inferences. Adults therefore consistently show a tendency to think about psychological and physical events as being embedded in different kinds of causal structures.
Relationship of causal effects in a causal chain and related inference
Institute of Scientific and Technical Information of China (English)
GENG Zhi; HE Yangbo; WANG Xueli
2004-01-01
This paper discusses the relationship among the total causal effect and local causal effects in a causal chain and identifiability of causal effects. We show a transmission relationship of causal effects in a causal chain. According to the relationship, we give an approach to eliminating confounding bias through controlling for intermediate variables in a causal chain.
Mendelian randomization: genetic anchors for causal inference in epidemiological studies
Davey Smith, George; Hemani, Gibran
2014-01-01
Observational epidemiological studies are prone to confounding, reverse causation and various biases and have generated findings that have proved to be unreliable indicators of the causal effects of modifiable exposures on disease outcomes. Mendelian randomization (MR) is a method that utilizes genetic variants that are robustly associated with such modifiable exposures to generate more reliable evidence regarding which interventions should produce health benefits. The approach is being widely applied, and various ways to strengthen inference given the known potential limitations of MR are now available. Developments of MR, including two-sample MR, bidirectional MR, network MR, two-step MR, factorial MR and multiphenotype MR, are outlined in this review. The integration of genetic information into population-based epidemiological studies presents translational opportunities, which capitalize on the investment in genomic discovery research. PMID:25064373
Yoon, Ju Young; Brown, Roger L
2014-01-01
Cross-lagged panel analysis (CLPA) is a method of examining one-way or reciprocal causal inference between longitudinally changing variables. It has been used in the social sciences for many years, but not much in nursing research. This article introduces the conceptual and statistical background of CLPA and provides an exemplar of CLPA that examines the reciprocal causal relationship between depression and cognitive function over time in older adults. The 2-year cross-lagged effects of depressive symptoms (T1) on cognitive function (T2) and cognitive function (T1) on depressive symptoms (T2) were significant, which demonstrated a reciprocal causal relationship between cognitive function and depressive mood over time. Although CLPA is a methodologically strong approach to examine the reciprocal causal inferences over time, it is necessary to consider potential sources of spuriousness to lead to false causal relationship and a reasonable time frame to detect the change of the variables.
Elaborations for the Validation of Causal Bridging Inferences in Text Comprehension
Morishima, Yasunori
2016-01-01
The validation model of causal bridging inferences proposed by Singer and colleagues (e.g., Singer in "Can J Exp Psychol," 47(2):340-359, 1993) claims that before a causal bridging inference is accepted, it must be validated by existing knowledge. For example, to understand "Dorothy took the aspirins. Her pain went away," one…
Causal inference methods to study nonrandomized, preexisting development interventions
Arnold, Benjamin F.; Khush, Ranjiv S.; Ramaswamy, Padmavathi; London, Alicia G.; Rajkumar, Paramasivan; Ramaprabha, Prabhakar; Durairaj, Natesan; Hubbard, Alan E.; Balakrishnan, Kalpana; Colford, John M.
2010-01-01
Empirical measurement of interventions to address significant global health and development problems is necessary to ensure that resources are applied appropriately. Such intervention programs are often deployed at the group or community level. The gold standard design to measure the effectiveness of community-level interventions is the community-randomized trial, but the conditions of these trials often make it difficult to assess their external validity and sustainability. The sheer number of community interventions, relative to randomized studies, speaks to a need for rigorous observational methods to measure their impact. In this article, we use the potential outcomes model for causal inference to motivate a matched cohort design to study the impact and sustainability of nonrandomized, preexisting interventions. We illustrate the method using a sanitation mobilization, water supply, and hygiene intervention in rural India. In a matched sample of 25 villages, we enrolled 1,284 children <5 y old and measured outcomes over 12 mo. Although we found a 33 percentage point difference in new toilet construction [95% confidence interval (CI) = 28%, 39%], we found no impacts on height-for-age Z scores (adjusted difference = 0.01, 95% CI = −0.15, 0.19) or diarrhea (adjusted longitudinal prevalence difference = 0.003, 95% CI = −0.001, 0.008) among children <5 y old. This study demonstrates that matched cohort designs can estimate impacts from nonrandomized, preexisting interventions that are used widely in development efforts. Interpreting the impacts as causal, however, requires stronger assumptions than prospective, randomized studies. PMID:21149699
Causal Inference and Model Selection in Complex Settings
Zhao, Shandong
Propensity score methods have become a part of the standard toolkit for applied researchers who wish to ascertain causal effects from observational data. While they were originally developed for binary treatments, several researchers have proposed generalizations of the propensity score methodology for non-binary treatment regimes. In this article, we firstly review three main methods that generalize propensity scores in this direction, namely, inverse propensity weighting (IPW), the propensity function (P-FUNCTION), and the generalized propensity score (GPS), along with recent extensions of the GPS that aim to improve its robustness. We compare the assumptions, theoretical properties, and empirical performance of these methods. We propose three new methods that provide robust causal estimation based on the P-FUNCTION and GPS. While our proposed P-FUNCTION-based estimator preforms well, we generally advise caution in that all available methods can be biased by model misspecification and extrapolation. In a related line of research, we consider adjustment for posttreatment covariates in causal inference. Even in a randomized experiment, observations might have different compliance performance under treatment and control assignment. This posttreatment covariate cannot be adjusted using standard statistical methods. We review the principal stratification framework which allows for modeling this effect as part of its Bayesian hierarchical models. We generalize the current model to add the possibility of adjusting for pretreatment covariates. We also propose a new estimator of the average treatment effect over the entire population. In a third line of research, we discuss the spectral line detection problem in high energy astrophysics. We carefully review how this problem can be statistically formulated as a precise hypothesis test with point null hypothesis, why a usual likelihood ratio test does not apply for problem of this nature, and a doable fix to correctly
For and Against Methodologies: Some Perspectives on Recent Causal and Statistical Inference Debates.
Greenland, Sander
2017-01-01
I present an overview of two methods controversies that are central to analysis and inference: That surrounding causal modeling as reflected in the "causal inference" movement, and that surrounding null bias in statistical methods as applied to causal questions. Human factors have expanded what might otherwise have been narrow technical discussions into broad philosophical debates. There seem to be misconceptions about the requirements and capabilities of formal methods, especially in notions that certain assumptions or models (such as potential-outcome models) are necessary or sufficient for valid inference. I argue that, once these misconceptions are removed, most elements of the opposing views can be reconciled. The chief problem of causal inference then becomes one of how to teach sound use of formal methods (such as causal modeling, statistical inference, and sensitivity analysis), and how to apply them without generating the overconfidence and misinterpretations that have ruined so many statistical practices.
Causal inference algorithms can be useful in life course epidemiology
la Bastide-van Gemert, Sacha; Stolk, Ronald P.; van den Heuvel, Edwin R.; Fidler, Vaclav
2014-01-01
Objectives: Life course epidemiology attempts to unravel causal relationships between variables observed over time. Causal relationships can be represented as directed acyclic graphs. This article explains the theoretical concepts of the search algorithms used for finding such representations, discu
Causal inference algorithms can be useful in life course epidemiology
la Bastide-van Gemert, Sacha; Stolk, Ronald P.; van den Heuvel, Edwin R.; Fidler, Vaclav
Objectives: Life course epidemiology attempts to unravel causal relationships between variables observed over time. Causal relationships can be represented as directed acyclic graphs. This article explains the theoretical concepts of the search algorithms used for finding such representations,
Sizochenko, Natalia; Gajewicz, Agnieszka; Leszczynski, Jerzy; Puzyn, Tomasz
2016-03-01
In this paper, we suggest that causal inference methods could be efficiently used in Quantitative Structure-Activity Relationships (QSAR) modeling as additional validation criteria within quality evaluation of the model. Verification of the relationships between descriptors and toxicity or other activity in the QSAR model has a vital role in understanding the mechanisms of action. The well-known phrase ``correlation does not imply causation'' reflects insight statistically correlated with the endpoint descriptor may not cause the emergence of this endpoint. Hence, paradigmatic shifts must be undertaken when moving from traditional statistical correlation analysis to causal analysis of multivariate data. Methods of causal discovery have been applied for broader physical insight into mechanisms of action and interpretation of the developed nano-QSAR models. Previously developed nano-QSAR models for toxicity of 17 nano-sized metal oxides towards E. coli bacteria have been validated by means of the causality criteria. Using the descriptors confirmed by the causal technique, we have developed new models consistent with the straightforward causal-reasoning account. It was proven that causal inference methods are able to provide a more robust mechanistic interpretation of the developed nano-QSAR models.In this paper, we suggest that causal inference methods could be efficiently used in Quantitative Structure-Activity Relationships (QSAR) modeling as additional validation criteria within quality evaluation of the model. Verification of the relationships between descriptors and toxicity or other activity in the QSAR model has a vital role in understanding the mechanisms of action. The well-known phrase ``correlation does not imply causation'' reflects insight statistically correlated with the endpoint descriptor may not cause the emergence of this endpoint. Hence, paradigmatic shifts must be undertaken when moving from traditional statistical correlation analysis to causal
Inferring action structure and causal relationships in continuous sequences of human action.
Buchsbaum, Daphna; Griffiths, Thomas L; Plunkett, Dillon; Gopnik, Alison; Baldwin, Dare
2015-02-01
In the real world, causal variables do not come pre-identified or occur in isolation, but instead are embedded within a continuous temporal stream of events. A challenge faced by both human learners and machine learning algorithms is identifying subsequences that correspond to the appropriate variables for causal inference. A specific instance of this problem is action segmentation: dividing a sequence of observed behavior into meaningful actions, and determining which of those actions lead to effects in the world. Here we present a Bayesian analysis of how statistical and causal cues to segmentation should optimally be combined, as well as four experiments investigating human action segmentation and causal inference. We find that both people and our model are sensitive to statistical regularities and causal structure in continuous action, and are able to combine these sources of information in order to correctly infer both causal relationships and segmentation boundaries.
Small, Dylan S; Joffe, Marshall M; Lynch, Kevin G; Roy, Jason A; Russell Localio, A
2014-09-10
Tom Ten Have made many contributions to causal inference and biostatistics before his untimely death. This paper reviews Tom's contributions and discusses potential related future research directions. We focus on Tom's contributions to longitudinal/repeated measures categorical data analysis and particularly his contributions to causal inference. Tom's work on causal inference was primarily in the areas of estimating the effect of receiving treatment in randomized trials with nonadherence and mediation analysis. A related area to mediation analysis he was working on at the time of his death was posttreatment effect modification with applications to designing adaptive treatment strategies.
Non-Bayesian Inference: Causal Structure Trumps Correlation
Bes, Benedicte; Sloman, Steven; Lucas, Christopher G.; Raufaste, Eric
2012-01-01
The study tests the hypothesis that conditional probability judgments can be influenced by causal links between the target event and the evidence even when the statistical relations among variables are held constant. Three experiments varied the causal structure relating three variables and found that (a) the target event was perceived as more…
Inferring causal molecular networks: empirical assessment through a community-based effort.
Hill, Steven M; Heiser, Laura M; Cokelaer, Thomas; Unger, Michael; Nesser, Nicole K; Carlin, Daniel E; Zhang, Yang; Sokolov, Artem; Paull, Evan O; Wong, Chris K; Graim, Kiley; Bivol, Adrian; Wang, Haizhou; Zhu, Fan; Afsari, Bahman; Danilova, Ludmila V; Favorov, Alexander V; Lee, Wai Shing; Taylor, Dane; Hu, Chenyue W; Long, Byron L; Noren, David P; Bisberg, Alexander J; Mills, Gordon B; Gray, Joe W; Kellen, Michael; Norman, Thea; Friend, Stephen; Qutub, Amina A; Fertig, Elana J; Guan, Yuanfang; Song, Mingzhou; Stuart, Joshua M; Spellman, Paul T; Koeppl, Heinz; Stolovitzky, Gustavo; Saez-Rodriguez, Julio; Mukherjee, Sach
2016-04-01
It remains unclear whether causal, rather than merely correlational, relationships in molecular networks can be inferred in complex biological settings. Here we describe the HPN-DREAM network inference challenge, which focused on learning causal influences in signaling networks. We used phosphoprotein data from cancer cell lines as well as in silico data from a nonlinear dynamical model. Using the phosphoprotein data, we scored more than 2,000 networks submitted by challenge participants. The networks spanned 32 biological contexts and were scored in terms of causal validity with respect to unseen interventional data. A number of approaches were effective, and incorporating known biology was generally advantageous. Additional sub-challenges considered time-course prediction and visualization. Our results suggest that learning causal relationships may be feasible in complex settings such as disease states. Furthermore, our scoring approach provides a practical way to empirically assess inferred molecular networks in a causal sense.
Inferring Action Structure and Causal Relationships in Continuous Sequences of Human Action
2014-01-01
3), 1382-1407. Baldwin, D. A., Baird, J., Saylor, M., & Clark, A. (2001). Infants parse dynamic human action. Child Development , 72 (3), 708-717. Bes...scared cause tummy aches? naive theories, ambiguous evidence, and preschoolers ’ causal inferences. Developmental Psychology, 43 (5), 1124-1139. Schulz, L...E., & Sommerville, J. (2006). God does not play dice: Causal determinism and children’s inferences about unobserved causes. Child Development , 77
Causal Inference from Big Data: Theoretical Foundations and the Data-fusion Problem
2015-06-01
advantages of SCMs lies in their transparency and representational effectiveness [6]. Eq. (1) implies that the distribution P (u) induces a well de- fined...the next section as part of the Structural Causal Model ( SCM ) framework. One unique feature of the SCM framework, essential in big data applications...defining structural causal models ( SCMs ) and stating the two fundamental laws of causal inference. We then consider re- spectively the problem of
Algorithms of causal inference for the analysis of effective connectivity among brain regions
Directory of Open Access Journals (Sweden)
Daniel eChicharro
2014-07-01
Full Text Available In recent years, powerful general algorithms of causal inference have been developed. In particular, in the framework of Pearl’s causality, algorithms of inductive causation (IC and IC* provide a procedure to determine which causal connections among nodes in a network can be inferred from empirical observations even in the presence of latent variables, indicating the limits of what can be learned without active manipulation of the system. These algorithms can in principle become important complements to established techniques such as Granger causality and Dynamic Causal Modeling (DCM to analyze causal influences (effective connectivity among brain regions. However, their application to dynamic processes has not been yet examined. Here we study how to apply these algorithms to time-varying signals such as electrophysiological or neuroimaging signals. We propose a new algorithm which combines the basic principles of the previous algorithms with Granger causality to obtain a representation of the causal relations suited to dynamic processes. Furthermore, we use graphical criteria to predict dynamic statistical dependencies between the signals from the causal structure. We show how some problems for causal inference from neural signals (e.g. measurement noise, hemodynamic responses, and time aggregation can be understood in a general graphical approach. Focusing on the effect of spatial aggregation, we show that when causal inference is performed at a coarser scale than the one at which the neural sources interact, results strongly depend on the degree of integration of the neural sources aggregated in the signals, and thus characterize more the intra-areal properties than the interactions among regions. We finally discuss how the explicit consideration of latent processes contributes to understand Granger causality and DCM as well as to distinguish functional and effective connectivity.
Algorithms of causal inference for the analysis of effective connectivity among brain regions.
Chicharro, Daniel; Panzeri, Stefano
2014-01-01
In recent years, powerful general algorithms of causal inference have been developed. In particular, in the framework of Pearl's causality, algorithms of inductive causation (IC and IC(*)) provide a procedure to determine which causal connections among nodes in a network can be inferred from empirical observations even in the presence of latent variables, indicating the limits of what can be learned without active manipulation of the system. These algorithms can in principle become important complements to established techniques such as Granger causality and Dynamic Causal Modeling (DCM) to analyze causal influences (effective connectivity) among brain regions. However, their application to dynamic processes has not been yet examined. Here we study how to apply these algorithms to time-varying signals such as electrophysiological or neuroimaging signals. We propose a new algorithm which combines the basic principles of the previous algorithms with Granger causality to obtain a representation of the causal relations suited to dynamic processes. Furthermore, we use graphical criteria to predict dynamic statistical dependencies between the signals from the causal structure. We show how some problems for causal inference from neural signals (e.g., measurement noise, hemodynamic responses, and time aggregation) can be understood in a general graphical approach. Focusing on the effect of spatial aggregation, we show that when causal inference is performed at a coarser scale than the one at which the neural sources interact, results strongly depend on the degree of integration of the neural sources aggregated in the signals, and thus characterize more the intra-areal properties than the interactions among regions. We finally discuss how the explicit consideration of latent processes contributes to understand Granger causality and DCM as well as to distinguish functional and effective connectivity.
Critical reasoning on causal inference in genome-wide linkage and association studies
Li, Yang; Tesson, Bruno M.; Churchill, Gary A.; Jansen, Ritsert C.
2010-01-01
Genome-wide linkage and association studies of tens of thousands of clinical and molecular traits are currently underway, offering rich data for inferring causality between traits and genetic variation. However, the inference process is based on discovering subtle patterns in the correlation between
On the violation of causal, emotional, and locative inferences: An event-related potentials study.
Rodríguez-Gómez, Pablo; Sánchez-Carmona, Alberto; Smith, Cybelle; Pozo, Miguel A; Hinojosa, José A; Moreno, Eva M
2016-07-01
Previous event-related potential studies have demonstrated the online generation of inferences during reading for comprehension tasks. The present study contrasted the brainwave patterns of activity to the fulfilment or violation of various types of inferences (causal, emotional, locative). Relative to inference congruent sentence endings, a typical centro-parietal N400 was elicited for the violation of causal and locative inferences. This N400 effect was initially absent for emotional inferences, most likely due to their lower cloze probability. Between 500 and 750ms, a larger frontal positivity (pN400FP) was elicited by inference incongruent sentence endings in the causal condition. In emotional sentences, both inference congruent and incongruent endings exerted this frontally distributed late positivity. For the violation of locative inferences, the larger positivity was only marginally significant over left posterior scalp locations. Thus, not all inference eliciting sentences evoked a similar pattern of ERP responses. We interpret and discuss our results in line with recent views on what the N400, the P600 and the pN400FP brainwave potentials index.
CAUSAL INFERENCE WITH A GRAPHICAL HIERARCHY OF INTERVENTIONS.
Shpitser, Ilya; Tchetgen, Eric Tchetgen
2016-12-01
Identifying causal parameters from observational data is fraught with subtleties due to the issues of selection bias and confounding. In addition, more complex questions of interest, such as effects of treatment on the treated and mediated effects may not always be identified even in data where treatment assignment is known and under investigator control, or may be identified under one causal model but not another. Increasingly complex effects of interest, coupled with a diversity of causal models in use resulted in a fragmented view of identification. This fragmentation makes it unnecessarily difficult to determine if a given parameter is identified (and in what model), and what assumptions must hold for this to be the case. This, in turn, complicates the development of estimation theory and sensitivity analysis procedures. In this paper, we give a unifying view of a large class of causal effects of interest, including novel effects not previously considered, in terms of a hierarchy of interventions, and show that identification theory for this large class reduces to an identification theory of random variables under interventions from this hierarchy. Moreover, we show that one type of intervention in the hierarchy is naturally associated with queries identified under the Finest Fully Randomized Causally Interpretable Structure Tree Graph (FFRCISTG) model of Robins (via the extended g-formula), and another is naturally associated with queries identified under the Non-Parametric Structural Equation Model with Independent Errors (NPSEM-IE) of Pearl, via a more general functional we call the edge g-formula. Our results motivate the study of estimation theory for the edge g-formula, since we show it arises both in mediation analysis, and in settings where treatment assignment has unobserved causes, such as models associated with Pearl's front-door criterion.
Identifying Seizure Onset Zone From the Causal Connectivity Inferred Using Directed Information
Malladi, Rakesh; Kalamangalam, Giridhar; Tandon, Nitin; Aazhang, Behnaam
2016-10-01
In this paper, we developed a model-based and a data-driven estimator for directed information (DI) to infer the causal connectivity graph between electrocorticographic (ECoG) signals recorded from brain and to identify the seizure onset zone (SOZ) in epileptic patients. Directed information, an information theoretic quantity, is a general metric to infer causal connectivity between time-series and is not restricted to a particular class of models unlike the popular metrics based on Granger causality or transfer entropy. The proposed estimators are shown to be almost surely convergent. Causal connectivity between ECoG electrodes in five epileptic patients is inferred using the proposed DI estimators, after validating their performance on simulated data. We then proposed a model-based and a data-driven SOZ identification algorithm to identify SOZ from the causal connectivity inferred using model-based and data-driven DI estimators respectively. The data-driven SOZ identification outperforms the model-based SOZ identification algorithm when benchmarked against visual analysis by neurologist, the current clinical gold standard. The causal connectivity analysis presented here is the first step towards developing novel non-surgical treatments for epilepsy.
Inference of causality in epidemics on temporal contact networks
Braunstein, Alfredo; Ingrosso, Alessandro
2016-06-01
Investigating into the past history of an epidemic outbreak is a paramount problem in epidemiology. Based on observations about the state of individuals, on the knowledge of the network of contacts and on a mathematical model for the epidemic process, the problem consists in describing some features of the posterior distribution of unobserved past events, such as the source, potential transmissions, and undetected positive cases. Several methods have been proposed for the study of these inference problems on discrete-time, synchronous epidemic models on networks, including naive Bayes, centrality measures, accelerated Monte-Carlo approaches and Belief Propagation. However, most traced real networks consist of short-time contacts on continuous time. A possibility that has been adopted is to discretize time line into identical intervals, a method that becomes more and more precise as the length of the intervals vanishes. Unfortunately, the computational time of the inference methods increase with the number of intervals, turning a sufficiently precise inference procedure often impractical. We show here an extension of the Belief Propagation method that is able to deal with a model of continuous-time events, without resorting to time discretization. We also investigate the effect of time discretization on the quality of the inference.
Perceiving individuals and groups: expectancies, dispositional inferences, and causal attributions.
Susskind, J; Maurer, K; Thakkar, V; Hamilton, D L; Sherman, J W
1999-02-01
Two experiments investigated differences in forming impressions of individual and group targets. Experiment 1 showed that when forming an impression of an individual, perceivers made more extreme trait judgments, made those judgments more quickly and with greater confidence, and recalled more information than when the impression target was a group. Experiment 2 showed that when participants were forming an impression of an individual, expectancy-inconsistent behaviors spontaneously triggered causal attributions to resolve the inconsistency; this was not the case when the impression target was a group. Results are interpreted as reflecting perceivers' a priori assumptions of unity and coherence in individual versus group targets.
Janzing, Dominik; Chaves, Rafael; Schölkopf, Bernhard
2016-09-01
We postulate a principle stating that the initial condition of a physical system is typically algorithmically independent of the dynamical law. We discuss the implications of this principle and argue that they link thermodynamics and causal inference. On the one hand, they entail behavior that is similar to the usual arrow of time. On the other hand, they motivate a statistical asymmetry between cause and effect that has recently been postulated in the field of causal inference, namely, that the probability distribution {P}{{cause}} contains no information about the conditional distribution {P}{{effect}| {{cause}}} and vice versa, while {P}{{effect}} may contain information about {P}{{cause}| {{effect}}}.
The causal inference of cortical neural networks during music improvisations.
Wan, Xiaogeng; Crüts, Björn; Jensen, Henrik Jeldtoft
2014-01-01
We present an EEG study of two music improvisation experiments. Professional musicians with high level of improvisation skills were asked to perform music either according to notes (composed music) or in improvisation. Each piece of music was performed in two different modes: strict mode and "let-go" mode. Synchronized EEG data was measured from both musicians and listeners. We used one of the most reliable causality measures: conditional Mutual Information from Mixed Embedding (MIME), to analyze directed correlations between different EEG channels, which was combined with network theory to construct both intra-brain and cross-brain networks. Differences were identified in intra-brain neural networks between composed music and improvisation and between strict mode and "let-go" mode. Particular brain regions such as frontal, parietal and temporal regions were found to play a key role in differentiating the brain activities between different playing conditions. By comparing the level of degree centralities in intra-brain neural networks, we found a difference between the response of musicians and the listeners when comparing the different playing conditions.
The causal inference of cortical neural networks during music improvisations.
Directory of Open Access Journals (Sweden)
Xiaogeng Wan
Full Text Available We present an EEG study of two music improvisation experiments. Professional musicians with high level of improvisation skills were asked to perform music either according to notes (composed music or in improvisation. Each piece of music was performed in two different modes: strict mode and "let-go" mode. Synchronized EEG data was measured from both musicians and listeners. We used one of the most reliable causality measures: conditional Mutual Information from Mixed Embedding (MIME, to analyze directed correlations between different EEG channels, which was combined with network theory to construct both intra-brain and cross-brain networks. Differences were identified in intra-brain neural networks between composed music and improvisation and between strict mode and "let-go" mode. Particular brain regions such as frontal, parietal and temporal regions were found to play a key role in differentiating the brain activities between different playing conditions. By comparing the level of degree centralities in intra-brain neural networks, we found a difference between the response of musicians and the listeners when comparing the different playing conditions.
Johnson, Clay Stephen
2013-01-01
Synthetic control methods are an innovative matching technique first introduced within the economics and political science literature that have begun to find application in educational research as well. Synthetic controls create an aggregate-level, time-series comparison for a single treated unit of interest for causal inference with observational…
Shadish, William R.
2010-01-01
This article compares Donald Campbell's and Donald Rubin's work on causal inference in field settings on issues of epistemology, theories of cause and effect, methodology, statistics, generalization, and terminology. The two approaches are quite different but compatible, differing mostly in matters of bandwidth versus fidelity. Campbell's work…
Shadish, William R.
2010-01-01
This article compares Donald Campbell's and Donald Rubin's work on causal inference in field settings on issues of epistemology, theories of cause and effect, methodology, statistics, generalization, and terminology. The two approaches are quite different but compatible, differing mostly in matters of bandwidth versus fidelity. Campbell's work…
Accident reduction factors and causal inference in traffic safety studies: a review.
Davis, G A
2000-01-01
Accident reduction factors are used to predict the change in accident occurrence which a countermeasure can be expected to cause. Since ethical and legal obstacles preclude the use of randomized experiments when evaluating traffic safety improvements, empirical support for the causal effectiveness of accident countermeasures comes entirely from observational studies. Drawing on developments in causal inference initiated by Donald Rubin, it is argued here that the mechanism by which sites are selected for application of a countermeasure should be included as part of a study's data model, and that when important features of the selection mechanism are neglected, existing methods for estimating accident reduction factors become inconsistent. A promising, but neglected, way out of these difficulties lies in developing rational countermeasure selection methods which also support valid causal inference of countermeasure effects.
Inferring tree causal models of cancer progression with probability raising.
Directory of Open Access Journals (Sweden)
Loes Olde Loohuis
Full Text Available Existing techniques to reconstruct tree models of progression for accumulative processes, such as cancer, seek to estimate causation by combining correlation and a frequentist notion of temporal priority. In this paper, we define a novel theoretical framework called CAPRESE (CAncer PRogression Extraction with Single Edges to reconstruct such models based on the notion of probabilistic causation defined by Suppes. We consider a general reconstruction setting complicated by the presence of noise in the data due to biological variation, as well as experimental or measurement errors. To improve tolerance to noise we define and use a shrinkage-like estimator. We prove the correctness of our algorithm by showing asymptotic convergence to the correct tree under mild constraints on the level of noise. Moreover, on synthetic data, we show that our approach outperforms the state-of-the-art, that it is efficient even with a relatively small number of samples and that its performance quickly converges to its asymptote as the number of samples increases. For real cancer datasets obtained with different technologies, we highlight biologically significant differences in the progressions inferred with respect to other competing techniques and we also show how to validate conjectured biological relations with progression models.
Invited Commentary: Causal Inference Across Space and Time-Quixotic Quest, Worthy Goal, or Both?
Edwards, Jessie K; Lesko, Catherine R; Keil, Alexander P
2017-07-15
The g-formula and agent-based models (ABMs) are 2 approaches used to estimate causal effects. In the current issue of the Journal, Murray et al. (Am J Epidemiol. 2017;186(2):131-142) compare the performance of the g-formula and ABMs to estimate causal effects in 3 target populations. In their thoughtful paper, the authors outline several reasons that a causal effect estimated using an ABM may be biased when parameterized from at least 1 source external to the target population. The authors have addressed an important issue in epidemiology: Often causal effect estimates are needed to inform public health decisions in settings without complete data. Because public health decisions are urgent, epidemiologists are frequently called upon to estimate a causal effect from existing data in a separate population rather than perform new data collection activities. The assumptions needed to transport causal effects to a specific target population must be carefully stated and assessed, just as one would explicitly state and analyze the assumptions required to draw internally valid causal inference in a specific study sample. Considering external validity in important target populations increases the impact of epidemiologic studies. © The Author(s) 2017. Published by Oxford University Press on behalf of the Johns Hopkins Bloomberg School of Public Health. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.
Detecting dynamic causal inference in nonlinear two-phase fracture flow
Faybishenko, Boris
2017-08-01
Identifying dynamic causal inference involved in flow and transport processes in complex fractured-porous media is generally a challenging task, because nonlinear and chaotic variables may be positively coupled or correlated for some periods of time, but can then become spontaneously decoupled or non-correlated. In his 2002 paper (Faybishenko, 2002), the author performed a nonlinear dynamical and chaotic analysis of time-series data obtained from the fracture flow experiment conducted by Persoff and Pruess (1995), and, based on the visual examination of time series data, hypothesized that the observed pressure oscillations at both inlet and outlet edges of the fracture result from a superposition of both forward and return waves of pressure propagation through the fracture. In the current paper, the author explores an application of a combination of methods for detecting nonlinear chaotic dynamics behavior along with the multivariate Granger Causality (G-causality) time series test. Based on the G-causality test, the author infers that his hypothesis is correct, and presents a causation loop diagram of the spatial-temporal distribution of gas, liquid, and capillary pressures measured at the inlet and outlet of the fracture. The causal modeling approach can be used for the analysis of other hydrological processes, for example, infiltration and pumping tests in heterogeneous subsurface media, and climatic processes, for example, to find correlations between various meteorological parameters, such as temperature, solar radiation, barometric pressure, etc.
Robust causal inference using directed acyclic graphs: the R package 'dagitty'.
Textor, Johannes; van der Zander, Benito; Gilthorpe, Mark S; Liśkiewicz, Maciej; Ellison, George T H
2017-01-15
Directed acyclic graphs (DAGs), which offer systematic representations of causal relationships, have become an established framework for the analysis of causal inference in epidemiology, often being used to determine covariate adjustment sets for minimizing confounding bias. DAGitty is a popular web application for drawing and analysing DAGs. Here we introduce the R package 'dagitty', which provides access to all of the capabilities of the DAGitty web application within the R platform for statistical computing, and also offers several new functions. We describe how the R package 'dagitty' can be used to: evaluate whether a DAG is consistent with the dataset it is intended to represent; enumerate 'statistically equivalent' but causally different DAGs; and identify exposure-outcome adjustment sets that are valid for causally different but statistically equivalent DAGs. This functionality enables epidemiologists to detect causal misspecifications in DAGs and make robust inferences that remain valid for a range of different DAGs. The R package 'dagitty' is available through the comprehensive R archive network (CRAN) at [https://cran.r-project.org/web/packages/dagitty/]. The source code is available on github at [https://github.com/jtextor/dagitty]. The web application 'DAGitty' is free software, licensed under the GNU general public licence (GPL) version 2 and is available at [http://dagitty.net/].
Inference of Granger causal time-dependent influences in noisy multivariate time series.
Sommerlade, Linda; Thiel, Marco; Platt, Bettina; Plano, Andrea; Riedel, Gernot; Grebogi, Celso; Timmer, Jens; Schelter, Björn
2012-01-15
Inferring Granger-causal interactions between processes promises deeper insights into mechanisms underlying network phenomena, e.g. in the neurosciences where the level of connectivity in neural networks is of particular interest. Renormalized partial directed coherence has been introduced as a means to investigate Granger causality in such multivariate systems. A major challenge in estimating respective coherences is a reliable parameter estimation of vector autoregressive processes. We discuss two shortcomings typical in relevant applications, i.e. non-stationarity of the processes generating the time series and contamination with observational noise. To overcome both, we present a new approach by combining renormalized partial directed coherence with state space modeling. A numerical efficient way to perform both the estimation as well as the statistical inference will be presented.
Inference of Causal Relationships between Biomarkers and Outcomes in High Dimensions
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Felix Agakov
2011-12-01
Full Text Available We describe a unified computational framework for learning causal dependencies between genotypes, biomarkers, and phenotypic outcomes from large-scale data. In contrast to previous studies, our framework allows for noisy measurements, hidden confounders, missing data, and pleiotropic effects of genotypes on outcomes. The method exploits the use of genotypes as “instrumental variables” to infer causal associations between phenotypic biomarkers and outcomes, without requiring the assumption that genotypic effects are mediated only through the observed biomarkers. The framework builds on sparse linear methods developed in statistics and machine learning and modified here for inferring structures of richer networks with latent variables. Where the biomarkers are gene transcripts, the method can be used for fine mapping of quantitative trait loci (QTLs detected in genetic linkage studies. To demonstrate our method, we examined effects of gene transcript levels in the liver on plasma HDL cholesterol levels in a sample of 260 mice from a heterogeneous stock.
Moura, Lidia Mvr; Westover, M Brandon; Kwasnik, David; Cole, Andrew J; Hsu, John
2017-01-01
The elderly population faces an increasing number of cases of chronic neurological conditions, such as epilepsy and Alzheimer's disease. Because the elderly with epilepsy are commonly excluded from randomized controlled clinical trials, there are few rigorous studies to guide clinical practice. When the elderly are eligible for trials, they either rarely participate or frequently have poor adherence to therapy, thus limiting both generalizability and validity. In contrast, large observational data sets are increasingly available, but are susceptible to bias when using common analytic approaches. Recent developments in causal inference-analytic approaches also introduce the possibility of emulating randomized controlled trials to yield valid estimates. We provide a practical example of the application of the principles of causal inference to a large observational data set of patients with epilepsy. This review also provides a framework for comparative-effectiveness research in chronic neurological conditions.
The influence of cognitive ability and instructional set on causal conditional inference.
Evans, Jonathan St B T; Handley, Simon J; Neilens, Helen; Over, David
2010-05-01
We report a large study in which participants are invited to draw inferences from causal conditional sentences with varying degrees of believability. General intelligence was measured, and participants were split into groups of high and low ability. Under strict deductive-reasoning instructions, it was observed that higher ability participants were significantly less influenced by prior belief than were those of lower ability. This effect disappeared, however, when pragmatic reasoning instructions were employed in a separate group. These findings are in accord with dual-process theories of reasoning. We also took detailed measures of beliefs in the conditional sentences used for the reasoning tasks. Statistical modelling showed that it is not belief in the conditional statement per se that is the causal factor, but rather correlates of it. Two different models of belief-based reasoning were found to fit the data according to the kind of instructions and the type of inference under consideration.
Blackburn, Henry; Labarthe, Darwin
2012-01-01
Guidelines for causal inference in epidemiologic associations were a major contribution to modern epidemiologic analysis in the 1960s. This story recounts dramatic elements in a series of exchanges leading to their formulation and effective use in the 1964 Report of the Advisory Committee to the US Surgeon General on Smoking and Health, the landmark report which concluded that cigarette smoking caused lung cancer. The opening salvo was precipitated by Ancel Keys' presentation of an ecologic c...
Causal inference and longitudinal data: a case study of religion and mental health.
VanderWeele, Tyler J; Jackson, John W; Li, Shanshan
2016-11-01
We provide an introduction to causal inference with longitudinal data and discuss the complexities of analysis and interpretation when exposures can vary over time. We consider what types of causal questions can be addressed with the standard regression-based analyses and what types of covariate control and control for the prior values of outcome and exposure must be made to reason about causal effects. We also consider newer classes of causal models, including marginal structural models, that can assess questions of the joint effects of time-varying exposures and can take into account feedback between the exposure and outcome over time. Such feedback renders cross-sectional data ineffective for drawing inferences about causation. The challenges are illustrated by analyses concerning potential effects of religious service attendance on depression, in which there may in fact be effects in both directions with service attendance preventing the subsequent depression, but depression itself leading to lower levels of the subsequent religious service attendance. Longitudinal designs, with careful control for prior exposures, outcomes, and confounders, and suitable methodology, will strengthen research on mental health, religion and health, and in the biomedical and social sciences generally.
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Moura LMVR
2016-12-01
Full Text Available Lidia MVR Moura,1,2 M Brandon Westover,1,2 David Kwasnik,1 Andrew J Cole,1,2 John Hsu3–5 1Massachusetts General Hospital, Department of Neurology, Epilepsy Service, Boston, MA, USA; 2Harvard Medical School, Boston, MA, USA; 3Massachusetts General Hospital, Mongan Institute, Boston, MA, USA; 4Harvard Medical School, Department of Medicine, Boston, MA, USA; 5Harvard Medical School, Department of Health Care Policy, Boston, MA, USA Abstract: The elderly population faces an increasing number of cases of chronic neurological conditions, such as epilepsy and Alzheimer’s disease. Because the elderly with epilepsy are commonly excluded from randomized controlled clinical trials, there are few rigorous studies to guide clinical practice. When the elderly are eligible for trials, they either rarely participate or frequently have poor adherence to therapy, thus limiting both generalizability and validity. In contrast, large observational data sets are increasingly available, but are susceptible to bias when using common analytic approaches. Recent developments in causal inference-analytic approaches also introduce the possibility of emulating randomized controlled trials to yield valid estimates. We provide a practical example of the application of the principles of causal inference to a large observational data set of patients with epilepsy. This review also provides a framework for comparative-effectiveness research in chronic neurological conditions. Keywords: epilepsy, epidemiology, neurostatistics, causal inference
Oates, Chris J; Kasza, Jessica; Mukherjee, Sach
2016-01-01
Contribution to the discussion of the paper "Causal inference using invariant prediction: identification and confidence intervals" by Peters, B\\"uhlmann and Meinshausen, to appear in the Journal of the Royal Statistical Society, Series B.
Sequential causal inference: application to randomized trials of adaptive treatment strategies.
Dawson, Ree; Lavori, Philip W
2008-05-10
Clinical trials that randomize subjects to decision algorithms, which adapt treatments over time according to individual response, have gained considerable interest as investigators seek designs that directly inform clinical decision making. We consider designs in which subjects are randomized sequentially at decision points, among adaptive treatment options under evaluation. We present a sequential method to estimate the comparative effects of the randomized adaptive treatments, which are formalized as adaptive treatment strategies. Our causal estimators are derived using Bayesian predictive inference. We use analytical and empirical calculations to compare the predictive estimators to (i) the 'standard' approach that allocates the sequentially obtained data to separate strategy-specific groups as would arise from randomizing subjects at baseline; (ii) the semi-parametric approach of marginal mean models that, under appropriate experimental conditions, provides the same sequential estimator of causal differences as the proposed approach. Simulation studies demonstrate that sequential causal inference offers substantial efficiency gains over the standard approach to comparing treatments, because the predictive estimators can take advantage of the monotone structure of shared data among adaptive strategies. We further demonstrate that the semi-parametric asymptotic variances, which are marginal 'one-step' estimators, may exhibit significant bias, in contrast to the predictive variances. We show that the conditions under which the sequential method is attractive relative to the other two approaches are those most likely to occur in real studies.
Garcia-Huidobro, Diego; Michael Oakes, J
2017-04-01
Randomised controlled trials (RCTs) are typically viewed as the gold standard for causal inference. This is because effects of interest can be identified with the fewest assumptions, especially imbalance in background characteristics. Yet because conducting RCTs are expensive, time consuming and sometimes unethical, observational studies are frequently used to study causal associations. In these studies, imbalance, or confounding, is usually controlled with multiple regression, which entails strong assumptions. The purpose of this manuscript is to describe strengths and weaknesses of several methods to control for confounding in observational studies, and to demonstrate their use in cross-sectional dataset that use patient registration data from the Juan Pablo II Primary Care Clinic in La Pintana-Chile. The dataset contains responses from 5855 families who provided complete information on family socio-demographics, family functioning and health problems among their family members. We employ regression adjustment, stratification, restriction, matching, propensity score matching, standardisation and inverse probability weighting to illustrate the approaches to better causal inference in non-experimental data and compare results. By applying study design and data analysis techniques that control for confounding in different ways than regression adjustment, researchers may strengthen the scientific relevance of observational studies.
Bowden, Jack; Fall, Tove; Ingelsson, Erik; Thompson, Simon G.
2017-01-01
Mendelian randomization investigations are becoming more powerful and simpler to perform, due to the increasing size and coverage of genome-wide association studies and the increasing availability of summarized data on genetic associations with risk factors and disease outcomes. However, when using multiple genetic variants from different gene regions in a Mendelian randomization analysis, it is highly implausible that all the genetic variants satisfy the instrumental variable assumptions. This means that a simple instrumental variable analysis alone should not be relied on to give a causal conclusion. In this article, we discuss a range of sensitivity analyses that will either support or question the validity of causal inference from a Mendelian randomization analysis with multiple genetic variants. We focus on sensitivity analyses of greatest practical relevance for ensuring robust causal inferences, and those that can be undertaken using summarized data. Aside from cases in which the justification of the instrumental variable assumptions is supported by strong biological understanding, a Mendelian randomization analysis in which no assessment of the robustness of the findings to violations of the instrumental variable assumptions has been made should be viewed as speculative and incomplete. In particular, Mendelian randomization investigations with large numbers of genetic variants without such sensitivity analyses should be treated with skepticism. PMID:27749700
CauseMap: fast inference of causality from complex time series
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M. Cyrus Maher
2015-03-01
Full Text Available Background. Establishing health-related causal relationships is a central pursuit in biomedical research. Yet, the interdependent non-linearity of biological systems renders causal dynamics laborious and at times impractical to disentangle. This pursuit is further impeded by the dearth of time series that are sufficiently long to observe and understand recurrent patterns of flux. However, as data generation costs plummet and technologies like wearable devices democratize data collection, we anticipate a coming surge in the availability of biomedically-relevant time series data. Given the life-saving potential of these burgeoning resources, it is critical to invest in the development of open source software tools that are capable of drawing meaningful insight from vast amounts of time series data.Results. Here we present CauseMap, the first open source implementation of convergent cross mapping (CCM, a method for establishing causality from long time series data (≳25 observations. Compared to existing time series methods, CCM has the advantage of being model-free and robust to unmeasured confounding that could otherwise induce spurious associations. CCM builds on Takens’ Theorem, a well-established result from dynamical systems theory that requires only mild assumptions. This theorem allows us to reconstruct high dimensional system dynamics using a time series of only a single variable. These reconstructions can be thought of as shadows of the true causal system. If reconstructed shadows can predict points from opposing time series, we can infer that the corresponding variables are providing views of the same causal system, and so are causally related. Unlike traditional metrics, this test can establish the directionality of causation, even in the presence of feedback loops. Furthermore, since CCM can extract causal relationships from times series of, e.g., a single individual, it may be a valuable tool to personalized medicine. We implement
CauseMap: fast inference of causality from complex time series.
Maher, M Cyrus; Hernandez, Ryan D
2015-01-01
Background. Establishing health-related causal relationships is a central pursuit in biomedical research. Yet, the interdependent non-linearity of biological systems renders causal dynamics laborious and at times impractical to disentangle. This pursuit is further impeded by the dearth of time series that are sufficiently long to observe and understand recurrent patterns of flux. However, as data generation costs plummet and technologies like wearable devices democratize data collection, we anticipate a coming surge in the availability of biomedically-relevant time series data. Given the life-saving potential of these burgeoning resources, it is critical to invest in the development of open source software tools that are capable of drawing meaningful insight from vast amounts of time series data. Results. Here we present CauseMap, the first open source implementation of convergent cross mapping (CCM), a method for establishing causality from long time series data (≳25 observations). Compared to existing time series methods, CCM has the advantage of being model-free and robust to unmeasured confounding that could otherwise induce spurious associations. CCM builds on Takens' Theorem, a well-established result from dynamical systems theory that requires only mild assumptions. This theorem allows us to reconstruct high dimensional system dynamics using a time series of only a single variable. These reconstructions can be thought of as shadows of the true causal system. If reconstructed shadows can predict points from opposing time series, we can infer that the corresponding variables are providing views of the same causal system, and so are causally related. Unlike traditional metrics, this test can establish the directionality of causation, even in the presence of feedback loops. Furthermore, since CCM can extract causal relationships from times series of, e.g., a single individual, it may be a valuable tool to personalized medicine. We implement CCM in Julia, a
CauseMap: fast inference of causality from complex time series
Hernandez, Ryan D.
2015-01-01
Background. Establishing health-related causal relationships is a central pursuit in biomedical research. Yet, the interdependent non-linearity of biological systems renders causal dynamics laborious and at times impractical to disentangle. This pursuit is further impeded by the dearth of time series that are sufficiently long to observe and understand recurrent patterns of flux. However, as data generation costs plummet and technologies like wearable devices democratize data collection, we anticipate a coming surge in the availability of biomedically-relevant time series data. Given the life-saving potential of these burgeoning resources, it is critical to invest in the development of open source software tools that are capable of drawing meaningful insight from vast amounts of time series data. Results. Here we present CauseMap, the first open source implementation of convergent cross mapping (CCM), a method for establishing causality from long time series data (≳25 observations). Compared to existing time series methods, CCM has the advantage of being model-free and robust to unmeasured confounding that could otherwise induce spurious associations. CCM builds on Takens’ Theorem, a well-established result from dynamical systems theory that requires only mild assumptions. This theorem allows us to reconstruct high dimensional system dynamics using a time series of only a single variable. These reconstructions can be thought of as shadows of the true causal system. If reconstructed shadows can predict points from opposing time series, we can infer that the corresponding variables are providing views of the same causal system, and so are causally related. Unlike traditional metrics, this test can establish the directionality of causation, even in the presence of feedback loops. Furthermore, since CCM can extract causal relationships from times series of, e.g., a single individual, it may be a valuable tool to personalized medicine. We implement CCM in Julia, a
Antonakis, J.
2015-01-01
Making correct causal claims is important for research and practice. This article explains what causality is, and how it can be established via experimental design. Because experiments are infeasible in many applied settings, researchers often use "observational" methods to estimate causal models. In these situations, it is likely that model estimates are compromised by endogeneity. The article discusses the conditions that engender endogeneity and methods that can eliminate it.
Snowden, Jonathan M.; Rose, Sherri; Mortimer, Kathleen M.
2011-01-01
The growing body of work in the epidemiology literature focused on G-computation includes theoretical explanations of the method but very few simulations or examples of application. The small number of G-computation analyses in the epidemiology literature relative to other causal inference approaches may be partially due to a lack of didactic explanations of the method targeted toward an epidemiology audience. The authors provide a step-by-step demonstration of G-computation that is intended to familiarize the reader with this procedure. The authors simulate a data set and then demonstrate both G-computation and traditional regression to draw connections and illustrate contrasts between their implementation and interpretation relative to the truth of the simulation protocol. A marginal structural model is used for effect estimation in the G-computation example. The authors conclude by answering a series of questions to emphasize the key characteristics of causal inference techniques and the G-computation procedure in particular. PMID:21415029
Longitudinal Causal Inference of Cognitive Function and Depressive Symptoms in Elderly People
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Ping Yao
2015-09-01
Full Text Available AbstractObjective: the association between depressive symptoms (Center for Epidemiologic Studies Depression Scale [CES-D] and subsequent cognitive function (Mini-Mental State Examination [MMSE] is equivocal in literature. To examine the causal relationship between them, we use longitudinal data on MMSE and CESD and causal inference to illustrate the relationship between two health outcomes.Method: Data were obtained from the Hispanic Established Populations for Epidemiologic Studies of the Elderly. Participants included 3050 noninstitutionalized Mexican Americans aged 65 and older followed from 1993-2001. Cognitive function and depressive symptoms were assessed using the MMSE and CESD at baseline and at 2, 5, and 7 years of follow-up. Independent variables were sociodemographics, CESD, medical conditions. Marginal structural causal models were employed to evaluate the extent to which cognitive function depend not only on depressive symptoms measured at a single point in time but also on an individual’s entire depressive symptoms history. Discussion: our results indicate that if intervention to reduce 1 points of depressive symptoms were made at two years prior to assessing cognitive function, they would result in average improvement in cognitive function of 0.12, 95% CI [0.06, 0.18],P<.0001. Conclusion: The results suggest that health intervention of depressive symptoms would be useful in prevention of cognitive impair.
A new method to infer causal phenotype networks using QTL and phenotypic information.
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Huange Wang
Full Text Available In the context of genetics and breeding research on multiple phenotypic traits, reconstructing the directional or causal structure between phenotypic traits is a prerequisite for quantifying the effects of genetic interventions on the traits. Current approaches mainly exploit the genetic effects at quantitative trait loci (QTLs to learn about causal relationships among phenotypic traits. A requirement for using these approaches is that at least one unique QTL has been identified for each trait studied. However, in practice, especially for molecular phenotypes such as metabolites, this prerequisite is often not met due to limited sample sizes, high noise levels and small QTL effects. Here, we present a novel heuristic search algorithm called the QTL+phenotype supervised orientation (QPSO algorithm to infer causal directions for edges in undirected phenotype networks. The two main advantages of this algorithm are: first, it does not require QTLs for each and every trait; second, it takes into account associated phenotypic interactions in addition to detected QTLs when orienting undirected edges between traits. We evaluate and compare the performance of QPSO with another state-of-the-art approach, the QTL-directed dependency graph (QDG algorithm. Simulation results show that our method has broader applicability and leads to more accurate overall orientations. We also illustrate our method with a real-life example involving 24 metabolites and a few major QTLs measured on an association panel of 93 tomato cultivars. Matlab source code implementing the proposed algorithm is freely available upon request.
Mendelian Randomization versus Path Models: Making Causal Inferences in Genetic Epidemiology.
Ziegler, Andreas; Mwambi, Henry; König, Inke R
2015-01-01
The term Mendelian randomization is popular in the current literature. The first aim of this work is to describe the idea of Mendelian randomization studies and the assumptions required for drawing valid conclusions. The second aim is to contrast Mendelian randomization and path modeling when different 'omics' levels are considered jointly. We define Mendelian randomization as introduced by Katan in 1986, and review its crucial assumptions. We introduce path models as the relevant additional component to the current use of Mendelian randomization studies in 'omics'. Real data examples for the association between lipid levels and coronary artery disease illustrate the use of path models. Numerous assumptions underlie Mendelian randomization, and they are difficult to be fulfilled in applications. Path models are suitable for investigating causality, and they should not be mixed up with the term Mendelian randomization. In many applications, path modeling would be the appropriate analysis in addition to a simple Mendelian randomization analysis. Mendelian randomization and path models use different concepts for causal inference. Path modeling but not simple Mendelian randomization analysis is well suited to study causality with different levels of 'omics' data. 2015 S. Karger AG, Basel.
Schuck, A M; Widom, C S
2001-08-01
Previous research has reported a relationship between childhood victimization experiences and alcohol problems in females. This paper has two distinct goals: (1) to determine whether it is appropriate to make a causal inference regarding the association between early child abuse and neglect and alcohol symptoms in females; and (2) to examine five potential mechanisms (depression, worthlessness, social isolation/loneliness, low self esteem, and using alcohol and/or drugs to cope) that may mediate the relationship between child abuse and neglect and alcohol symptomatology. Substantiated cases of child abuse and neglect from 1967 to 1971 were matched on sex, age, race, and approximate social class with nonabused and non-neglected children and followed prospectively into young adulthood. Subjects were administered a 2-h in-person interview, including the NIMH Diagnostic Interview Schedule (DIS-III-R) to assess alcohol use and abuse. Analyses are restricted to females in the sample (N = 582). Structural equation modeling provides support for the inference that childhood victimization plays a causal role in the development of alcohol symptoms in women. There also is support for the hypothesized mediating role of two mechanisms (depression and using alcohol/drugs to cope), but not for the other mediators. Evidence from this prospective study suggests that childhood victimization may be one of the causal factors in the development of alcohol problems in females. Interventions should bedirected at abused and neglected females of all ages to help them to deal with depression and to develop coping strategies to prevent the development of serious alcohol problems.
Moving in time: Bayesian causal inference explains movement coordination to auditory beats.
Elliott, Mark T; Wing, Alan M; Welchman, Andrew E
2014-07-07
Many everyday skilled actions depend on moving in time with signals that are embedded in complex auditory streams (e.g. musical performance, dancing or simply holding a conversation). Such behaviour is apparently effortless; however, it is not known how humans combine auditory signals to support movement production and coordination. Here, we test how participants synchronize their movements when there are potentially conflicting auditory targets to guide their actions. Participants tapped their fingers in time with two simultaneously presented metronomes of equal tempo, but differing in phase and temporal regularity. Synchronization therefore depended on integrating the two timing cues into a single-event estimate or treating the cues as independent and thereby selecting one signal over the other. We show that a Bayesian inference process explains the situations in which participants choose to integrate or separate signals, and predicts motor timing errors. Simulations of this causal inference process demonstrate that this model provides a better description of the data than other plausible models. Our findings suggest that humans exploit a Bayesian inference process to control movement timing in situations where the origin of auditory signals needs to be resolved.
Pearl, Judea
2000-03-01
Written by one of the pre-eminent researchers in the field, this book provides a comprehensive exposition of modern analysis of causation. It shows how causality has grown from a nebulous concept into a mathematical theory with significant applications in the fields of statistics, artificial intelligence, philosophy, cognitive science, and the health and social sciences. Pearl presents a unified account of the probabilistic, manipulative, counterfactual and structural approaches to causation, and devises simple mathematical tools for analyzing the relationships between causal connections, statistical associations, actions and observations. The book will open the way for including causal analysis in the standard curriculum of statistics, artifical intelligence, business, epidemiology, social science and economics. Students in these areas will find natural models, simple identification procedures, and precise mathematical definitions of causal concepts that traditional texts have tended to evade or make unduly complicated. This book will be of interest to professionals and students in a wide variety of fields. Anyone who wishes to elucidate meaningful relationships from data, predict effects of actions and policies, assess explanations of reported events, or form theories of causal understanding and causal speech will find this book stimulating and invaluable.
Rottman, Benjamin M; Hastie, Reid
2016-06-01
Making judgments by relying on beliefs about the causal relationships between events is a fundamental capacity of everyday cognition. In the last decade, Causal Bayesian Networks have been proposed as a framework for modeling causal reasoning. Two experiments were conducted to provide comprehensive data sets with which to evaluate a variety of different types of judgments in comparison to the standard Bayesian networks calculations. Participants were introduced to a fictional system of three events and observed a set of learning trials that instantiated the multivariate distribution relating the three variables. We tested inferences on chains X1→Y→X2, common cause structures X1←Y→X2, and common effect structures X1→Y←X2, on binary and numerical variables, and with high and intermediate causal strengths. We tested transitive inferences, inferences when one variable is irrelevant because it is blocked by an intervening variable (Markov Assumption), inferences from two variables to a middle variable, and inferences about the presence of one cause when the alternative cause was known to have occurred (the normative "explaining away" pattern). Compared to the normative account, in general, when the judgments should change, they change in the normative direction. However, we also discuss a few persistent violations of the standard normative model. In addition, we evaluate the relative success of 12 theoretical explanations for these deviations.
Challenges to inferring causality from viral information dispersion in dynamic social networks
Ternovski, John
2014-06-01
Understanding the mechanism behind large-scale information dispersion through complex networks has important implications for a variety of industries ranging from cyber-security to public health. With the unprecedented availability of public data from online social networks (OSNs) and the low cost nature of most OSN outreach, randomized controlled experiments, the "gold standard" of causal inference methodologies, have been used with increasing regularity to study viral information dispersion. And while these studies have dramatically furthered our understanding of how information disseminates through social networks by isolating causal mechanisms, there are still major methodological concerns that need to be addressed in future research. This paper delineates why modern OSNs are markedly different from traditional sociological social networks and why these differences present unique challenges to experimentalists and data scientists. The dynamic nature of OSNs is particularly troublesome for researchers implementing experimental designs, so this paper identifies major sources of bias arising from network mutability and suggests strategies to circumvent and adjust for these biases. This paper also discusses the practical considerations of data quality and collection, which may adversely impact the efficiency of the estimator. The major experimental methodologies used in the current literature on virality are assessed at length, and their strengths and limits identified. Other, as-yetunsolved threats to the efficiency and unbiasedness of causal estimators--such as missing data--are also discussed. This paper integrates methodologies and learnings from a variety of fields under an experimental and data science framework in order to systematically consolidate and identify current methodological limitations of randomized controlled experiments conducted in OSNs.
Credible Granger-Causality Inference with Modest Sample Lengths: A Cross-Sample Validation Approach
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Richard A. Ashley
2014-03-01
Full Text Available Credible Granger-causality analysis appears to require post-sample inference, as it is well-known that in-sample fit can be a poor guide to actual forecasting effectiveness. However, post-sample model testing requires an often-consequential a priori partitioning of the data into an “in-sample” period – purportedly utilized only for model specification/estimation – and a “post-sample” period, purportedly utilized (only at the end of the analysis for model validation/testing purposes. This partitioning is usually infeasible, however, with samples of modest length – e.g., T ≤ 150 – as is common in both quarterly data sets and/or in monthly data sets where institutional arrangements vary over time, simply because there is in such cases insufficient data available to credibly accomplish both purposes separately. A cross-sample validation (CSV testing procedure is proposed below which both eliminates the aforementioned a priori partitioning and which also substantially ameliorates this power versus credibility predicament – preserving most of the power of in-sample testing (by utilizing all of the sample data in the test, while also retaining most of the credibility of post-sample testing (by always basing model forecasts on data not utilized in estimating that particular model’s coefficients. Simulations show that the price paid, in terms of power relative to the in-sample Granger-causality F test, is manageable. An illustrative application is given, to a re-analysis of the Engel andWest [1] study of the causal relationship between macroeconomic fundamentals and the exchange rate; several of their conclusions are changed by our analysis.
Causal inference for community-based multi-layered intervention study.
Wu, Pan; Gunzler, Douglas; Lu, Naiji; Chen, Tian; Wymen, Peter; Tu, Xin M
2014-09-28
Estimating causal treatment effect for randomized controlled trials under post-treatment confounding, that is, noncompliance and informative dropouts, is becoming an important problem in intervention/prevention studies when the treatment exposures are not completely controlled. When confounding is present in a study, the traditional intention-to-treat approach could underestimate the treatment effect because of insufficient exposure of treatment. In the recent two decades, many papers have been published to address such confounders to investigate the causal relationship between treatment and outcome of interest based on different modeling strategies. Most of the existing approaches, however, are suitable only for standard experiments. In this paper, we propose a new class of structural functional response model to address post-treatment confounding in complex multi-layered intervention studies within a longitudinal data setting. The new approach offers robust inference and is readily implemented. We illustrate and assess the performance of the proposed structural functional response model using both real and simulated data.
Errors in causal inference: an organizational schema for systematic error and random error.
Suzuki, Etsuji; Tsuda, Toshihide; Mitsuhashi, Toshiharu; Mansournia, Mohammad Ali; Yamamoto, Eiji
2016-11-01
To provide an organizational schema for systematic error and random error in estimating causal measures, aimed at clarifying the concept of errors from the perspective of causal inference. We propose to divide systematic error into structural error and analytic error. With regard to random error, our schema shows its four major sources: nondeterministic counterfactuals, sampling variability, a mechanism that generates exposure events and measurement variability. Structural error is defined from the perspective of counterfactual reasoning and divided into nonexchangeability bias (which comprises confounding bias and selection bias) and measurement bias. Directed acyclic graphs are useful to illustrate this kind of error. Nonexchangeability bias implies a lack of "exchangeability" between the selected exposed and unexposed groups. A lack of exchangeability is not a primary concern of measurement bias, justifying its separation from confounding bias and selection bias. Many forms of analytic errors result from the small-sample properties of the estimator used and vanish asymptotically. Analytic error also results from wrong (misspecified) statistical models and inappropriate statistical methods. Our organizational schema is helpful for understanding the relationship between systematic error and random error from a previously less investigated aspect, enabling us to better understand the relationship between accuracy, validity, and precision. Copyright © 2016 Elsevier Inc. All rights reserved.
Wang, Chen-Pin; Jo, Booil; Brown, C Hendricks
2014-09-10
We propose a principal stratification approach to assess causal effects in nonrandomized longitudinal comparative effectiveness studies with a binary endpoint outcome and repeated measures of a continuous intermediate variable. Our method is an extension of the principal stratification approach originally proposed for the longitudinal randomized study "Prevention of Suicide in Primary Care Elderly: Collaborative Trial" to assess the treatment effect on the continuous Hamilton depression score adjusting for the heterogeneity of repeatedly measured binary compliance status. Our motivation for this work comes from a comparison of the effect of two glucose-lowering medications on a clinical cohort of patients with type 2 diabetes. Here, we consider a causal inference problem assessing how well the two medications work relative to one another on two binary endpoint outcomes: cardiovascular disease-related hospitalization and all-cause mortality. Clinically, these glucose-lowering medications can have differential effects on the intermediate outcome, glucose level over time. Ultimately, we want to compare medication effects on the endpoint outcomes among individuals in the same glucose trajectory stratum while accounting for the heterogeneity in baseline covariates (i.e., to obtain 'principal effects' on the endpoint outcomes). The proposed method involves a three-step model estimation procedure. Step 1 identifies principal strata associated with the intermediate variable using hybrid growth mixture modeling analyses. Step 2 obtains the stratum membership using the pseudoclass technique and derives propensity scores for treatment assignment. Step 3 obtains the stratum-specific treatment effect on the endpoint outcome weighted by inverse propensity probabilities derived from Step 2.
Causal inference for continuous-time processes when covariates are observed only at discrete times
Zhang, Mingyuan; Small, Dylan S; 10.1214/10-AOS830
2011-01-01
Most of the work on the structural nested model and g-estimation for causal inference in longitudinal data assumes a discrete-time underlying data generating process. However, in some observational studies, it is more reasonable to assume that the data are generated from a continuous-time process and are only observable at discrete time points. When these circumstances arise, the sequential randomization assumption in the observed discrete-time data, which is essential in justifying discrete-time g-estimation, may not be reasonable. Under a deterministic model, we discuss other useful assumptions that guarantee the consistency of discrete-time g-estimation. In more general cases, when those assumptions are violated, we propose a controlling-the-future method that performs at least as well as g-estimation in most scenarios and which provides consistent estimation in some cases where g-estimation is severely inconsistent. We apply the methods discussed in this paper to simulated data, as well as to a data set c...
An alternative empirical likelihood method in missing response problems and causal inference.
Ren, Kaili; Drummond, Christopher A; Brewster, Pamela S; Haller, Steven T; Tian, Jiang; Cooper, Christopher J; Zhang, Biao
2016-11-30
Missing responses are common problems in medical, social, and economic studies. When responses are missing at random, a complete case data analysis may result in biases. A popular debias method is inverse probability weighting proposed by Horvitz and Thompson. To improve efficiency, Robins et al. proposed an augmented inverse probability weighting method. The augmented inverse probability weighting estimator has a double-robustness property and achieves the semiparametric efficiency lower bound when the regression model and propensity score model are both correctly specified. In this paper, we introduce an empirical likelihood-based estimator as an alternative to Qin and Zhang (2007). Our proposed estimator is also doubly robust and locally efficient. Simulation results show that the proposed estimator has better performance when the propensity score is correctly modeled. Moreover, the proposed method can be applied in the estimation of average treatment effect in observational causal inferences. Finally, we apply our method to an observational study of smoking, using data from the Cardiovascular Outcomes in Renal Atherosclerotic Lesions clinical trial. Copyright © 2016 John Wiley & Sons, Ltd.
The control outcome calibration approach for causal inference with unobserved confounding.
Tchetgen Tchetgen, Eric
2014-03-01
Unobserved confounding can seldom be ruled out with certainty in nonexperimental studies. Negative controls are sometimes used in epidemiologic practice to detect the presence of unobserved confounding. An outcome is said to be a valid negative control variable to the extent that it is influenced by unobserved confounders of the exposure effects on the outcome in view, although not directly influenced by the exposure. Thus, a negative control outcome found to be empirically associated with the exposure after adjustment for observed confounders indicates that unobserved confounding may be present. In this paper, we go beyond the use of control outcomes to detect possible unobserved confounding and propose to use control outcomes in a simple but formal counterfactual-based approach to correct causal effect estimates for bias due to unobserved confounding. The proposed control outcome calibration approach is developed in the context of a continuous or binary outcome, and the control outcome and the exposure can be discrete or continuous. A sensitivity analysis technique is also developed, which can be used to assess the degree to which a violation of the main identifying assumption of the control outcome calibration approach might impact inference about the effect of the exposure on the outcome in view.
Hume, Mill, Hill, and the sui generis epidemiologic approach to causal inference.
Morabia, Alfredo
2013-11-15
The epidemiologic approach to causal inference (i.e., Hill's viewpoints) consists of evaluating potential causes from the following 2, noncumulative angles: 1) established results from comparative, observational, or experimental epidemiologic studies; and 2) reviews of nonepidemiologic evidence. It does not involve statements of statistical significance. The philosophical roots of Hill's viewpoints are unknown. Superficially, they seem to descend from the ideas of Hume and Mill. Hill's viewpoints, however, use a different kind of evidence and have different purposes than do Hume's rules or Mill's system of logic. In a nutshell, Hume ignores comparative evidence central to Hill's viewpoints. Mill's logic disqualifies as invalid nonexperimental evidence, which forms the bulk of epidemiologic findings reviewed from Hill's viewpoints. The approaches by Hume and Mill cannot corroborate successful implementations of Hill's viewpoints. Besides Hume and Mill, the epidemiologic literature is clueless about a plausible, pre-1965 philosophical origin of Hill's viewpoints. Thus, Hill's viewpoints may be philosophically novel, sui generis, still waiting to be validated and justified.
Sobel, David M.; Buchanan, David W.
2009-01-01
Previous research has shown that preschoolers extend labels and internal properties of objects based on those objects' causal properties, even when the causal properties conflict with the objects' perceptual appearance [Nazzi, T., & Gopnik, A. (2000). "A shift in children's use of perceptual and causal cues to categorization." "Developmental…
Gross, Kevin; Rosenheim, Jay A
2011-10-01
Secondary pest outbreaks occur when the use of a pesticide to reduce densities of an unwanted target pest species triggers subsequent outbreaks of other pest species. Although secondary pest outbreaks are thought to be familiar in agriculture, their rigorous documentation is made difficult by the challenges of performing randomized experiments at suitable scales. Here, we quantify the frequency and monetary cost of secondary pest outbreaks elicited by early-season applications of broad-spectrum insecticides to control the plant bug Lygus spp. (primarily L. hesperus) in cotton grown in the San Joaquin Valley, California, USA. We do so by analyzing pest-control management practices for 969 cotton fields spanning nine years and 11 private ranches. Our analysis uses statistical methods to draw formal causal inferences from nonexperimental data that have become popular in public health and economics, but that are not yet widely known in ecology or agriculture. We find that, in fields that received an early-season broad-spectrum insecticide treatment for Lygus, 20.2% +/- 4.4% (mean +/- SE) of late-season pesticide costs were attributable to secondary pest outbreaks elicited by the early-season insecticide application for Lygus. In 2010 U.S. dollars, this equates to an additional $6.00 +/- $1.30 (mean +/- SE) per acre in management costs. To the extent that secondary pest outbreaks may be driven by eliminating pests' natural enemies, these figures place a lower bound on the monetary value of ecosystem services provided by native communities of arthropod predators and parasitoids in this agricultural system.
Alonso, Ariel; Van der Elst, Wim; Molenberghs, Geert; Buyse, Marc; Burzykowski, Tomasz
2015-03-01
The increasing cost of drug development has raised the demand for surrogate endpoints when evaluating new drugs in clinical trials. However, over the years, it has become clear that surrogate endpoints need to be statistically evaluated and deemed valid, before they can be used as substitutes of "true" endpoints in clinical studies. Nowadays, two paradigms, based on causal-inference and meta-analysis, dominate the scene. Nonetheless, although the literature emanating from these paradigms is wide, till now the relationship between them has largely been left unexplored. In the present work, we discuss the conceptual framework underlying both approaches and study the relationship between them using theoretical elements and the analysis of a real case study. Furthermore, we show that the meta-analytic approach can be embedded within a causal-inference framework on the one hand and that it can be heuristically justified why surrogate endpoints successfully evaluated using this approach will often be appealing from a causal-inference perspective as well, on the other. A newly developed and user friendly R package Surrogate is provided to carry out the evaluation exercise.
Quinn, Christopher J; Coleman, Todd P; Kiyavash, Negar; Hatsopoulos, Nicholas G
2011-02-01
Advances in recording technologies have given neuroscience researchers access to large amounts of data, in particular, simultaneous, individual recordings of large groups of neurons in different parts of the brain. A variety of quantitative techniques have been utilized to analyze the spiking activities of the neurons to elucidate the functional connectivity of the recorded neurons. In the past, researchers have used correlative measures. More recently, to better capture the dynamic, complex relationships present in the data, neuroscientists have employed causal measures-most of which are variants of Granger causality-with limited success. This paper motivates the directed information, an information and control theoretic concept, as a modality-independent embodiment of Granger's original notion of causality. Key properties include: (a) it is nonzero if and only if one process causally influences another, and (b) its specific value can be interpreted as the strength of a causal relationship. We next describe how the causally conditioned directed information between two processes given knowledge of others provides a network version of causality: it is nonzero if and only if, in the presence of the present and past of other processes, one process causally influences another. This notion is shown to be able to differentiate between true direct causal influences, common inputs, and cascade effects in more two processes. We next describe a procedure to estimate the directed information on neural spike trains using point process generalized linear models, maximum likelihood estimation and information-theoretic model order selection. We demonstrate that on a simulated network of neurons, it (a) correctly identifies all pairwise causal relationships and (b) correctly identifies network causal relationships. This procedure is then used to analyze ensemble spike train recordings in primary motor cortex of an awake monkey while performing target reaching tasks, uncovering
Analogical and Category-Based Inference: A Theoretical Integration with Bayesian Causal Models
Holyoak, Keith J.; Lee, Hee Seung; Lu, Hongjing
2010-01-01
A fundamental issue for theories of human induction is to specify constraints on potential inferences. For inferences based on shared category membership, an analogy, and/or a relational schema, it appears that the basic goal of induction is to make accurate and goal-relevant inferences that are sensitive to uncertainty. People can use source…
Inoue, K; Valente, B D; Shoji, N; Honda, T; Oyama, K; Rosa, G J M
2016-10-01
Meat quality is one of the most important traits determining carcass price in the Japanese beef market. Optimized breeding goals and management practices for the improvement of meat quality traits requires knowledge regarding any potential functional relationships between them. In this context, the objective of this research was to infer phenotypic causal networks involving beef marbling score (BMS), beef color score (BCL), firmness of beef (FIR), texture of beef (TEX), beef fat color score (BFS), and the ratio of MUFA to SFA (MUS) from 11,855 Japanese Black cattle. The inductive causation (IC) algorithm was implemented to search for causal links among these traits and was conditionally applied to their joint distribution on genetic effects. This information was obtained from the posterior distribution of the residual (co)variance matrix of a standard Bayesian multiple trait model (MTM). Apart from BFS, the IC algorithm implemented with 95% highest posterior density (HPD) intervals detected only undirected links among the traits. However, as a result of the application of 80% HPD intervals, more links were recovered and the undirected links were changed into directed ones, except between FIR and TEX. Therefore, 2 competing causal networks resulting from the IC algorithm, with either the arrow FIR → TEX or the arrow FIR ← TEX, were fitted using a structural equation model () to infer causal structure coefficients between the selected traits. Results indicated similar genetic and residual variances as well as genetic correlation estimates from both structural equation models. The genetic variances in BMS, FIR, and TEX from the structural equation models were smaller than those obtained from the MTM. In contrast, the variances in BCL, BFS, and MUS, which were not conditioned on any of the other traits in the causal structures, had no significant differences between the structural equation model and MTM. The structural coefficient for the path from MUS (BCL) to BMS
Inference of biological networks using Bi-directional Random Forest Granger causality.
Furqan, Mohammad Shaheryar; Siyal, Mohammad Yakoob
2016-01-01
The standard ordinary least squares based Granger causality is one of the widely used methods for detecting causal interactions between time series data. However, recent developments in technology limit the utilization of some existing implementations due to the availability of high dimensional data. In this paper, we are proposing a technique called Bi-directional Random Forest Granger causality. This technique uses the random forest regularization together with the idea of reusing the time series data by reversing the time stamp to extract more causal information. We have demonstrated the effectiveness of our proposed method by applying it to simulated data and then applied it to two real biological datasets, i.e., fMRI and HeLa cell. fMRI data was used to map brain network involved in deductive reasoning while HeLa cell dataset was used to map gene network involved in cancer.
Yu, Wen; Chen, Kani; Sobel, Michael E; Ying, Zhiliang
2015-03-01
We consider causal inference in randomized survival studies with right censored outcomes and all-or-nothing compliance, using semiparametric transformation models to estimate the distribution of survival times in treatment and control groups, conditional on covariates and latent compliance type. Estimands depending on these distributions, for example, the complier average causal effect (CACE), the complier effect on survival beyond time t, and the complier quantile effect are then considered. Maximum likelihood is used to estimate the parameters of the transformation models, using a specially designed expectation-maximization (EM) algorithm to overcome the computational difficulties created by the mixture structure of the problem and the infinite dimensional parameter in the transformation models. The estimators are shown to be consistent, asymptotically normal, and semiparametrically efficient. Inferential procedures for the causal parameters are developed. A simulation study is conducted to evaluate the finite sample performance of the estimated causal parameters. We also apply our methodology to a randomized study conducted by the Health Insurance Plan of Greater New York to assess the reduction in breast cancer mortality due to screening.
A Bayesian network approach for causal inferences in pesticide risk assessment and management
Pesticide risk assessment and management must balance societal benefits and ecosystem protection, based on quantified risks and the strength of the causal linkages between uses of the pesticide and socioeconomic and ecological endpoints of concern. A Bayesian network (BN) is a gr...
Just Do It? Investigating the Gap between Prediction and Action in Toddlers Causal Inferences
Bonawitz, Elizabeth Baraff; Ferranti, Darlene; Saxe, Rebecca; Gopnik, Alison; Meltzoff, Andrew N.; Woodward, James; Schulz, Laura E.
2010-01-01
Adults' causal representations integrate information about predictive relations and the possibility of effective intervention; if one event reliably predicts another, adults can represent the possibility that acting to bring about the first event might generate the second. Here we show that although toddlers (mean age: 24 months) readily learn…
A New Method to Infer Causal Phenotype Networks Using QTL and Phenotypic Information
Wang, H.; Eeuwijk, van F.
2014-01-01
In the context of genetics and breeding research on multiple phenotypic traits, reconstructing the directional or causal structure between phenotypic traits is a prerequisite for quantifying the effects of genetic interventions on the traits. Current approaches mainly exploit the genetic effects at
Crowley, D Max; Coffman, Donna L; Feinberg, Mark E; Greenberg, Mark T; Spoth, Richard L
2014-04-01
Despite growing recognition of the important role implementation plays in successful prevention efforts, relatively little work has sought to demonstrate a causal relationship between implementation factors and participant outcomes. In turn, failure to explore the implementation-to-outcome link limits our understanding of the mechanisms essential to successful programming. This gap is partially due to the inability of current methodological procedures within prevention science to account for the multitude of confounders responsible for variation in implementation factors (i.e., selection bias). The current paper illustrates how propensity and marginal structural models can be used to improve causal inferences involving implementation factors not easily randomized (e.g., participant attendance). We first present analytic steps for simultaneously evaluating the impact of multiple implementation factors on prevention program outcome. Then, we demonstrate this approach for evaluating the impact of enrollment and attendance in a family program, over and above the impact of a school-based program, within PROSPER, a large-scale real-world prevention trial. Findings illustrate the capacity of this approach to successfully account for confounders that influence enrollment and attendance, thereby more accurately representing true causal relations. For instance, after accounting for selection bias, we observed a 5% reduction in the prevalence of 11th grade underage drinking for those who chose to receive a family program and school program compared to those who received only the school program. Further, we detected a 7% reduction in underage drinking for those with high attendance in the family program.
Ishikawa, Akira
2017-01-01
It is still challenging to identify causal genes governing obesity. Pbwg1.5, a quantitative trait locus (QTL) for resistance to obesity, was previously discovered from wild Mus musculus castaneus mice and was fine-mapped to a 2.1-Mb genomic region of mouse chromosome 2, where no known gene with an effect on white adipose tissue (WAT) has been reported. The aim of this study was to identify a strong candidate gene for Pbwg1.5 by an integration approach of transcriptome analysis (RNA-sequencing followed by real-time PCR analysis) and the causal inference test (CIT), a statistical method to infer causal relationships between diplotypes, gene expression and trait values. Body weight, body composition and biochemical traits were measured in F2 mice obtained from an intercross between the C57BL/6JJcl strain and a congenic strain carrying Pbwg1.5 on the C57BL/6JJcl background. The F2 mice showed significant diplotype differences in 12 traits including body weight, WAT weight and serum cholesterol/triglyceride levels. The transcriptome analysis revealed that Ly75, Pla2r1, Fap and Gca genes were differentially expressed in the liver and that Fap, Ifih1 and Grb14 were differentially expressed in WAT. However, CITs indicated statistical evidence that only the liver Ly75 gene mediated between genotype and WAT. Ly75 expression was negatively associated with WAT weight. The results suggested that Ly75 is a putative quantitative trait gene for the obesity-resistant Pbwg1.5 QTL discovered from the wild M. m. castaneus mouse. The finding provides a novel insight into a better understanding of the genetic basis for prevention of obesity.
Sex differences in the inference and perception of causal relations within a video game.
Young, Michael E
2014-01-01
The learning of immediate causation within a dynamic environment was examined. Participants encountered seven decision points in which they needed to choose, which of three possible candidates was the cause of explosions in the environment. Each candidate was firing a weapon at random every few seconds, but only one of them produced an immediate effect. Some participants showed little learning, but most demonstrated increases in accuracy across time. On average, men showed higher accuracy and shorter latencies that were not explained by differences in self-reported prior video game experience. This result suggests that prior reports of sex differences in causal choice in the game are not specific to situations involving delayed or probabilistic causal relations.
Sex differences in the inference and perception of causal relations within a video game
Directory of Open Access Journals (Sweden)
Michael E. Young
2014-08-01
Full Text Available The learning of immediate causation within a dynamic environment was examined. Participants encountered seven decision points in which they needed to choose which of three possible candidates was the cause of explosions in the environment. Each candidate was firing a weapon at random every few seconds, but only one of them produced an immediate effect. Some participants showed little learning, but most demonstrated increases in accuracy across time. On average, men showed higher accuracy and shorter latencies that were not explained by differences in self-reported prior video game experience. This result suggests that prior reports of sex differences in causal choice in the game are not specific to situations involving delayed or probabilistic causal relations.
Sex differences in the inference and perception of causal relations within a video game
Young, Michael E.
2014-01-01
The learning of immediate causation within a dynamic environment was examined. Participants encountered seven decision points in which they needed to choose, which of three possible candidates was the cause of explosions in the environment. Each candidate was firing a weapon at random every few seconds, but only one of them produced an immediate effect. Some participants showed little learning, but most demonstrated increases in accuracy across time. On average, men showed higher accuracy and shorter latencies that were not explained by differences in self-reported prior video game experience. This result suggests that prior reports of sex differences in causal choice in the game are not specific to situations involving delayed or probabilistic causal relations. PMID:25202293
Formulating Quantum Theory as a Causally Neutral Theory of Bayesian Inference
Leifer, M S
2011-01-01
Quantum theory can be viewed as a generalization of classical probability theory, but the analogy as it has been developed so far is not complete. Classical probability theory is independent of causal structure, whereas the conventional quantum formalism requires causal structure to be fixed in advance. In this paper, we develop the formalism of quantum conditional states, which unifies the description of experiments involving two systems at a single time with the description of those involving a single system at two times. The analogies between quantum theory and classical probability theory are expressed succinctly within the formalism and it unifies the mathematical description of distinct concepts, such as ensemble preparation procedures, measurements, and quantum dynamics. We introduce a quantum generalization of Bayes' theorem and the associated notion of Bayesian conditioning. Conditioning a quantum state on a classical variable is the correct rule for updating quantum states in light of classical data...
Using Mendelian randomisation to infer causality in depression and anxiety research.
Gage, Suzanne H; Smith, George Davey; Zammit, Stanley; Hickman, Matthew; Munafò, Marcus R
2013-12-01
Depression and anxiety co-occur with substance use and abuse at a high rate. Ascertaining whether substance use plays a causal role in depression and anxiety is difficult or impossible with conventional observational epidemiology. Mendelian randomisation uses genetic variants as a proxy for environmental exposures, such as substance use, which can address problems of reverse causation and residual confounding, providing stronger evidence about causality. Genetic variants can be used instead of directly measuring exposure levels, in order to gain an unbiased estimate of the effect of various exposures on depression and anxiety. The suitability of the genetic variant as a proxy can be ascertained by confirming that there is no relationship between variant and outcome in those who do not use the substance. At present, there are suitable instruments for tobacco use, so we use that as a case study. Proof-of-principle Mendelian randomisation studies using these variants have found evidence for a causal effect of smoking on body mass index. Two studies have investigated tobacco and depression using this method, but neither found strong evidence that smoking causes depression or anxiety; evidence is more consistent with a self-medication hypothesis. Mendelian randomisation represents a technique that can aid understanding of exposures that may or may not be causally related to depression and anxiety. As more suitable instruments emerge (including the use of allelic risk scores rather than individual single nucleotide polymorphisms), the effect of other substances can be investigated. Linkage disequilibrium, pleiotropy, and population stratification, which can distort Mendelian randomisation studies, are also discussed. © 2013 Wiley Periodicals, Inc.
Heckman, James J.
2008-01-01
This paper presents the econometric approach to causal modeling. It is motivated by policy problems. New causal parameters are defined and identified to address specific policy problems. Economists embrace a scientific approach to causality and model the preferences and choices of agents to infer subjective (agent) evaluations as well as objective outcomes. Anticipated and realized subjective and objective outcomes are distinguished. Models for simultaneous causality are developed. The paper ...
Van der Elst, Wim; Molenberghs, Geert; Alonso, Ariel
2016-04-15
Nowadays, two main frameworks for the evaluation of surrogate endpoints, based on causal-inference and meta-analysis, dominate the scene. Earlier work showed that the metrics of surrogacy introduced in both paradigms are related, although in a complex way that is difficult to study analytically. In the present work, this relationship is further examined using simulations and the analysis of a case study. The results indicate that the extent to which both paradigms lead to similar conclusions regarding the validity of the surrogate, depends on a complex interplay between multiple factors like the ratio of the between and within trial variability and the unidentifiable correlations between the potential outcomes. All the analyses were carried out using the newly developed R package Surrogate, which is freely available via CRAN.
Causal inference regarding infectious aetiology of chronic conditions: a systematic review.
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Sofia Orrskog
Full Text Available BACKGROUND: The global burden of disease has shifted from communicable diseases in children to chronic diseases in adults. This epidemiologic shift varies greatly by region, but in Europe, chronic conditions account for 86% of all deaths, 77% of the disease burden, and up to 80% of health care expenditures. A number of risk factors have been implicated in chronic diseases, such as exposure to infectious agents. A number of associations have been well established while others remain uncertain. METHODS AND FINDINGS: We assessed the body of evidence regarding the infectious aetiology of chronic diseases in the peer-reviewed literature over the last decade. Causality was assessed with three different criteria: First, the total number of associations documented in the literature between each infectious agent and chronic condition; second, the epidemiologic study design (quality of the study; third, evidence for the number of Hill's criteria and Koch's postulates that linked the pathogen with the chronic condition. We identified 3136 publications, of which 148 were included in the analysis. There were a total of 75 different infectious agents and 122 chronic conditions. The evidence was strong for five pathogens, based on study type, strength and number of associations; they accounted for 60% of the associations documented in the literature. They were human immunodeficiency virus, hepatitis C virus, Helicobacter pylori, hepatitis B virus, and Chlamydia pneumoniae and were collectively implicated in the aetiology of 37 different chronic conditions. Other pathogens examined were only associated with very few chronic conditions (≤ 3 and when applying the three different criteria of evidence the strength of the causality was weak. CONCLUSIONS: Prevention and treatment of these five pathogens lend themselves as effective public health intervention entry points. By concentrating research efforts on these promising areas, the human, economic, and societal
Beer, Bettina; Bender, Andrea
2015-01-01
As social beings, people need to be able to interact intelligently with others in their social environment. Accordingly, people spend much time conversing with one another in order to understand the broad and fine aspects of the relations that link them. They are especially interested in the interactive behaviors that constitute social relations, such as mutual aid, gift giving and exchange, sharing, informal socializing, or deception. The evaluations of these behaviors are embedded in social relationships and charged with values and emotions. We developed tasks to probe how people in an unfamiliar socio-cultural setting understand and account for the behavior of others conditional upon their category membership – by trying to elicit the basic categories, stereotypes, and models that inform the causal perceptions, inferences and reasoning people use in understanding others’ interactive behaviors – and we tested these tasks among the Wampar in Papua New Guinea. The results show changes in the relevance of social categories among the Wampar but also, and perhaps more important, limitations in the translation and applicability of cognitive tasks. PMID:25806007
病因统计推断中的因果关系研究%Causality in Statistical Inference for Causes of Disease
Institute of Scientific and Technical Information of China (English)
邓平基
2012-01-01
基于观察研究的病因推断是一个医学难题,由于疾病产生的原因往往混杂着社会、心理、环境和生理等复杂因素,因而因果关系并非简单就能证明出来.统计模型在病因推断中有其成立的先验假设条件,有些条件是不可经验证伪的.讨论统计推断中因果关系的含义,揭示因果统计推断背后隐藏的假设条件,从而看到病因统计推断的局限性.%Etiological inference based on observation study is a hard problem in medical science. It is uneasy to prove causality, because the causes of disease are often involved with the social, psychological, environmental and physiological factors. Statistical models carry out with prior assumptions, some of which are not empirical falsifi-able. This paper aims to discuss the concept of causality in statistical inference and reveal some assumptions rooted in causal statistical inference in order to see the limitations of statistical inference for etiology.
DEFF Research Database (Denmark)
Møller, Jesper
.1 with the title ‘Inference'.) This contribution concerns statistical inference for parametric models used in stochastic geometry and based on quick and simple simulation free procedures as well as more comprehensive methods using Markov chain Monte Carlo (MCMC) simulations. Due to space limitations the focus...
Directory of Open Access Journals (Sweden)
Gastón Saux
2015-12-01
Full Text Available RESUMEN: Se examinó la generación de inferencias causal-antecedente durante y luego de la lectura de textos expositivos con contenidos científicos poco familiares en 52 estudiantes de grado universitario (Edad M = 24.48, DS = 3.6, quienes leyeron 24 textos científicos breves. Se registraron dos medidas de activación durante la lectura (tiempos de lectura y decisión léxica y una medida post-lectura (respuestas a preguntas; además, se controló el grado de familiaridad de los materiales. Los resultados sugieren que las inferencias causal-antecedente son generadas al leer materiales científicos poco familiares, pero el grado de activación de la información requerida por la inferencia depende de la distancia de las partes del texto a ser integradas. ABSTRACT: The generation of causal inferences-background was examined during and after the reading of expository texts with little unfamiliar scientific content in 52 university level students (M Age = 24.48, SD = 3.6, who read 24 short scientific texts. There were two activation measures during the reading (reading times and lexical decision and a post-reading measure (answers to questions; in addition, the degree of familiarity of the material was controlled. The results suggest that causal inferences-background is generated when reading unfamiliar scientific material, but the degree of activation of the information required by inference depends on the distance of the parts of the text to be integrated.
Goedert, Kelly M; Grimm, Lisa R; Markman, Arthur B; Spellman, Barbara A
2014-02-01
Cultural mindset is related to performance on a variety of cognitive tasks. In particular, studies of both chronic and situationally-primed mindsets show that individuals with a relatively interdependent mindset (i.e., an emphasis on relationships and connections among individuals) are more sensitive to background contextual information than individuals with a more independent mindset. Two experiments tested whether priming cultural mindset would affect sensitivity to background causes in a contingency learning and causal inference task. Participants were primed (either independent or interdependent), and then saw complete contingency information on each of 12 trials for two cover stories in Experiment 1 (hiking causing skin rashes, severed brakes causing wrecked cars) and two additional cover stories in Experiment 2 (school deadlines causing stress, fertilizers causing plant growth). We expected that relative to independent-primed participants, those interdependent-primed would give more weight to the explicitly-presented data indicative of hidden alternative background causes, but they did not do so. In Experiment 1, interdependents gave less weight to the data indicative of hidden background causes for the car accident cover story and showed a decreased sensitivity to the contingencies for that story. In Experiment 2, interdependents placed less weight on the observable data for cover stories that supported more extra-experimental causes, while independents' sensitivity did not vary with these extra-experimental causes. Thus, interdependents were more sensitive to background causes not explicitly presented in the experiment, but this sensitivity hurt rather than improved their acquisition of the explicitly-presented contingency information.
Causal Effect Estimation Methods
2014-01-01
Relationship between two popular modeling frameworks of causal inference from observational data, namely, causal graphical model and potential outcome causal model is discussed. How some popular causal effect estimators found in applications of the potential outcome causal model, such as inverse probability of treatment weighted estimator and doubly robust estimator can be obtained by using the causal graphical model is shown. We confine to the simple case of binary outcome and treatment vari...
Ishanu Chattopadhyay
2014-01-01
While correlation measures are used to discern statistical relationships between observed variables in almost all branches of data-driven scientific inquiry, what we are really interested in is the existence of causal dependence. Designing an efficient causality test, that may be carried out in the absence of restrictive pre-suppositions on the underlying dynamical structure of the data at hand, is non-trivial. Nevertheless, ability to computationally infer statistical prima facie evidence of...
DEFF Research Database (Denmark)
Møller, Jesper
2010-01-01
Chapter 9: This contribution concerns statistical inference for parametric models used in stochastic geometry and based on quick and simple simulation free procedures as well as more comprehensive methods based on a maximum likelihood or Bayesian approach combined with markov chain Monte Carlo...
He, Weijing; Castiblanco, John; Walter, Elizabeth A; Okulicz, Jason F; Ahuja, Sunil K
2010-11-01
It is unknown whether biomarkers simply correlate with or are causal for HIV-associated outcomes. Mendelian randomization is a genetic epidemiologic approach used to disentangle causation from association. Here, we discuss the potential use of Mendelian randomization for differentiating whether biomarkers are correlating with or causal for HIV-associated outcomes. Mendelian randomization refers to the random allocation of alleles at the time of gamete formation. In observational epidemiology, this refers to the use of genetic variants to estimate a causal effect between a modifiable risk factor and an outcome of interest. A formal Mendelian randomization study using a genetic marker as a proxy for the biomarker has not been conducted in the HIV field. However, in the postgenomic era, this approach is being used increasingly. Examples are evidence for the causal role of BMI in blood pressure and noncausal role of C-reactive protein in coronary heart disease. We discuss the conceptual framework, uses, and limitations of Mendelian randomization in the context of HIV infection as well as specific biomarkers (IL-6, C-reactive protein) and genetic determinants (e.g., in CCR5, chemokine, and DARC genes) that associate with HIV-related outcomes. Making the distinction between correlation and causality has particular relevance when a biomarker (e.g., IL-6) is potentially modifiable, in which case a biomarker-guided targeted treatment strategy may be feasible. Although the tenets of Mendelian randomization rest on strong assumptions, and conducting a Mendelian randomization study in HIV infection presents many challenges, it may offer the potential to identify causal biomarkers for HIV-associated outcomes.
Causal and causally separable processes
Oreshkov, Ognyan; Giarmatzi, Christina
2016-09-01
The idea that events are equipped with a partial causal order is central to our understanding of physics in the tested regimes: given two pointlike events A and B, either A is in the causal past of B, B is in the causal past of A, or A and B are space-like separated. Operationally, the meaning of these order relations corresponds to constraints on the possible correlations between experiments performed in the vicinities of the respective events: if A is in the causal past of B, an experimenter at A could signal to an experimenter at B but not the other way around, while if A and B are space-like separated, no signaling is possible in either direction. In the context of a concrete physical theory, the correlations compatible with a given causal configuration may obey further constraints. For instance, space-like correlations in quantum mechanics arise from local measurements on joint quantum states, while time-like correlations are established via quantum channels. Similarly to other variables, however, the causal order of a set of events could be random, and little is understood about the constraints that causality implies in this case. A main difficulty concerns the fact that the order of events can now generally depend on the operations performed at the locations of these events, since, for instance, an operation at A could influence the order in which B and C occur in A’s future. So far, no formal theory of causality compatible with such dynamical causal order has been developed. Apart from being of fundamental interest in the context of inferring causal relations, such a theory is imperative for understanding recent suggestions that the causal order of events in quantum mechanics can be indefinite. Here, we develop such a theory in the general multipartite case. Starting from a background-independent definition of causality, we derive an iteratively formulated canonical decomposition of multipartite causal correlations. For a fixed number of settings and
Adami, Hans-Olov; Berry, Sir Colin L; Breckenridge, Charles B; Smith, Lewis L; Swenberg, James A; Trichopoulos, Dimitrios; Weiss, Noel S; Pastoor, Timothy P
2011-08-01
Historically, toxicology has played a significant role in verifying conclusions drawn on the basis of epidemiological findings. Agents that were suggested to have a role in human diseases have been tested in animals to firmly establish a causative link. Bacterial pathogens are perhaps the oldest examples, and tobacco smoke and lung cancer and asbestos and mesothelioma provide two more recent examples. With the advent of toxicity testing guidelines and protocols, toxicology took on a role that was intended to anticipate or predict potential adverse effects in humans, and epidemiology, in many cases, served a role in verifying or negating these toxicological predictions. The coupled role of epidemiology and toxicology in discerning human health effects by environmental agents is obvious, but there is currently no systematic and transparent way to bring the data and analysis of the two disciplines together in a way that provides a unified view on an adverse causal relationship between an agent and a disease. In working to advance the interaction between the fields of toxicology and epidemiology, we propose here a five-step "Epid-Tox" process that would focus on: (1) collection of all relevant studies, (2) assessment of their quality, (3) evaluation of the weight of evidence, (4) assignment of a scalable conclusion, and (5) placement on a causal relationship grid. The causal relationship grid provides a clear view of how epidemiological and toxicological data intersect, permits straightforward conclusions with regard to a causal relationship between agent and effect, and can show how additional data can influence conclusions of causality.
Morabia, Alfredo
2005-01-01
Epidemiological methods, which combine population thinking and group comparisons, can primarily identify causes of disease in populations. There is therefore a tension between our intuitive notion of a cause, which we want to be deterministic and invariant at the individual level, and the epidemiological notion of causes, which are invariant only at the population level. Epidemiologists have given heretofore a pragmatic solution to this tension. Causal inference in epidemiology consists in checking the logical coherence of a causality statement and determining whether what has been found grossly contradicts what we think we already know: how strong is the association? Is there a dose-response relationship? Does the cause precede the effect? Is the effect biologically plausible? Etc. This approach to causal inference can be traced back to the English philosophers David Hume and John Stuart Mill. On the other hand, the mode of establishing causality, devised by Jakob Henle and Robert Koch, which has been fruitful in bacteriology, requires that in every instance the effect invariably follows the cause (e.g., inoculation of Koch bacillus and tuberculosis). This is incompatible with epidemiological causality which has to deal with probabilistic effects (e.g., smoking and lung cancer), and is therefore invariant only for the population.
Rabbitt, Matthew P.
2016-11-01
Social scientists are often interested in examining causal relationships where the outcome of interest is represented by an intangible concept, such as an individual's well-being or ability. Estimating causal relationships in this scenario is particularly challenging because the social scientist must rely on measurement models to measure individual's properties or attributes and then address issues related to survey data, such as omitted variables. In this paper, the usefulness of the recently proposed behavioural Rasch selection model is explored using a series of Monte Carlo experiments. The behavioural Rasch selection model is particularly useful for these types of applications because it is capable of estimating the causal effect of a binary treatment effect on an outcome that is represented by an intangible concept using cross-sectional data. Other methodology typically relies of summary measures from measurement models that require additional assumptions, some of which make these approaches less efficient. Recommendations for application of the behavioural Rasch selection model are made based on results from the Monte Carlo experiments.
Wood, Alexis C; Rijsdijk, Fruhling; Asherson, Philip; Kuntsi, Jonna
2011-01-01
Previous research suggests an association between hyperactivity-impulsivity - one of the two behavioral dimensions that form attention deficit hyperactivity disorder - and the temperament characteristic of novelty seeking. We aimed to examine etiological links underlying the co-occurrence between these behaviors using a general population sample of 668 twin pairs, ages 7-10, for whom we obtained parent ratings in middle childhood; and pilot longitudinal data on 76 children. Structural equation modeling confirmed a shared genetic etiology (genetic correlation, r(D) = 0.81; 95% confidence intervals = 0.34-1.00) and showed that much (64%) of the covariation can be accounted for by shared genetic effects. In addition, causal paths were modeled between the two behaviors; 12% of the variance in novelty seeking at age 7 was accounted for by hyperactive-impulsive behaviors at the same age. The causal effects model fits with the current characterization of hyperactive-impulsive behaviors reflecting a heightened need for stimulation. This has important implications for the management of hyperactive-impulsive behaviors in clinical settings.
Directory of Open Access Journals (Sweden)
Alexis Caroline Wood
2011-03-01
Full Text Available Previous research suggests an association between hyperactivity-impulsivity – one of the two behavioural dimensions that form attention deficit hyperactivity disorder – and the temperament characteristic of novelty seeking. We aimed to examine etiological links underlying the co-occurrence between these behaviours using a general population sample of 668 twin pairs, ages 7-10, for whom we obtained parent ratings in middle childhood; and pilot longitudinal data on 76 children. Structural equation modelling confirmed a shared genetic etiology (genetic correlation, rD=.81; 95% confidence intervals [CI]= .34-1.00 and showed that much (64% of the covariation can be accounted for by shared genetic effects. In addition, causal paths were modelled between the two behaviours; 12% of the variance in novelty seeking at age 7 was accounted for by hyperactive-impulsive behaviors at the same age. The causal effects model fits with the current characterization of hyperactive-impulsive behaviors reflecting a heightened need for stimulation. This has important implications for the management of hyperactive-impulsive behaviors in clinical settings.
Glymour, M Maria; Spiegelman, Donna
2017-01-01
Counterfactual frameworks and statistical methods for supporting causal inference are powerful tools to clarify scientific questions and guide analyses in public health research. Counterfactual accounts of causation contrast what would happen to a population's health under alternative exposure scenarios. A long-standing debate in counterfactual theory relates to whether sex, race, and biological characteristics, including obesity, should be evaluated as causes, given that these variables do not directly correspond to clearly defined interventions. We argue that sex, race, and biological characteristics are important health determinants. Quantifying the overall health effects of these variables is often a natural starting point for disparities research. Subsequent assessments of biological or social pathways mediating those effects can facilitate the development of interventions designed to reduce disparities.
Yang, Hsiao-Yu; Chen, Pau-Chung; Wang, Jung-Der
2014-01-01
Herbal remedies containing aristolochic acid (AA) have been designated to be a strong carcinogen. This review summarizes major epidemiologic evidence to argue for the causal association between AA exposure and urothelial carcinoma as well as nephropathy. The exposure scenarios include the following: Belgian women taking slimming pills containing single material Guang Fang Ji, consumptions of mixtures of Chinese herbal products in the general population and patients with chronic renal failure in Taiwan, occupational exposure in Chinese herbalists, and food contamination in farming villages in valleys of the Danube River. Such an association is corroborated by detecting specific DNA adducts in the tumor tissue removed from affected patients. Preventive actions of banning such use and education to the healthcare professionals and public are necessary for the safety of herbal remedies.
Directory of Open Access Journals (Sweden)
Hsiao-Yu Yang
2014-01-01
Full Text Available Herbal remedies containing aristolochic acid (AA have been designated to be a strong carcinogen. This review summarizes major epidemiologic evidence to argue for the causal association between AA exposure and urothelial carcinoma as well as nephropathy. The exposure scenarios include the following: Belgian women taking slimming pills containing single material Guang Fang Ji, consumptions of mixtures of Chinese herbal products in the general population and patients with chronic renal failure in Taiwan, occupational exposure in Chinese herbalists, and food contamination in farming villages in valleys of the Danube River. Such an association is corroborated by detecting specific DNA adducts in the tumor tissue removed from affected patients. Preventive actions of banning such use and education to the healthcare professionals and public are necessary for the safety of herbal remedies.
Kaiser, Jacob L; Bland, Cassidy L; Klinke, David J
2016-03-01
Cancer arises from a deregulation of both intracellular and intercellular networks that maintain system homeostasis. Identifying the architecture of these networks and how they are changed in cancer is a pre-requisite for designing drugs to restore homeostasis. Since intercellular networks only appear in intact systems, it is difficult to identify how these networks become altered in human cancer using many of the common experimental models. To overcome this, we used the diversity in normal and malignant human tissue samples from the Cancer Genome Atlas (TCGA) database of human breast cancer to identify the topology associated with intercellular networks in vivo. To improve the underlying biological signals, we constructed Bayesian networks using metagene constructs, which represented groups of genes that are concomitantly associated with different immune and cancer states. We also used bootstrap resampling to establish the significance associated with the inferred networks. In short, we found opposing relationships between cell proliferation and epithelial-to-mesenchymal transformation (EMT) with regards to macrophage polarization. These results were consistent across multiple carcinomas in that proliferation was associated with a type 1 cell-mediated anti-tumor immune response and EMT was associated with a pro-tumor anti-inflammatory response. To address the identifiability of these networks from other datasets, we could identify the relationship between EMT and macrophage polarization with fewer samples when the Bayesian network was generated from malignant samples alone. However, the relationship between proliferation and macrophage polarization was identified with fewer samples when the samples were taken from a combination of the normal and malignant samples. © 2016 American Institute of Chemical Engineers Biotechnol. Prog., 32:470-479, 2016.
Neural Correlates of Causal Power Judgments
Directory of Open Access Journals (Sweden)
Denise Dellarosa Cummins
2014-12-01
Full Text Available Causal inference is a fundamental component of cognition and perception. Probabilistic theories of causal judgment (most notably causal Bayes networks derive causal judgments using metrics that integrate contingency information. But human estimates typically diverge from these normative predictions. This is because human causal power judgments are typically strongly influenced by beliefs concerning underlying causal mechanisms, and because of the way knowledge is retrieved from human memory during the judgment process. Neuroimaging studies indicate that the brain distinguishes causal events from mere covariation, and between perceived and inferred causality. Areas involved in error prediction are also activated, implying automatic activation of possible exception cases during causal decision-making.
2012-01-01
The causal assumptions, the study design and the data are the elements required for scientific inference in empirical research. The research is adequately communicated only if all of these elements and their relations are described precisely. Causal models with design describe the study design and the missing data mechanism together with the causal structure and allow the direct application of causal calculus in the estimation of the causal effects. The flow of the study is visualized by orde...
Institute of Scientific and Technical Information of China (English)
刘文远; 冯春辉; 张涛; 洪文学
2016-01-01
因果关系推断是因果顺序理论分析的重要研究内容之一。本文利用属性拓扑理论，提出基于属性拓扑的因果关系可视化推断方法。该方法利用属性拓扑的可视化特点，以属性拓扑中的伴生关系为基础，对属性对所属对象集之间的依赖关系进行分析和推理。通过属性拓扑中属性去除不断地更新形式背景，从而推断出各属性间的因果关系。该算法使因果关系计算精准、可视化且易于实现。%Causal inference is one of the important research contents in the analysis of causal order theory. In this paper, a visual inference method of causal relation is proposed based on the theory of attribute topology. This method makes use of the visual characteristics of attribute topology, based on the companion relation in attribute topology, ana-lyzes and reasoning the dependency between attributes on the set of objects. The formal context is updated by attribute removal in attribute topology, and the causal relationship between attributes is inferred. This algorithm makes the causal relation calculation accurate, visual and easy to implement.
Revisiting Causality in Markov Chains
Shojaee, Abbas
2016-01-01
Identifying causal relationships is a key premise of scientific research. The growth of observational data in different disciplines along with the availability of machine learning methods offers the possibility of using an empirical approach to identifying potential causal relationships, to deepen our understandings of causal behavior and to build theories accordingly. Conventional methods of causality inference from observational data require a considerable length of time series data to capture cause-effect relationship. We find that potential causal relationships can be inferred from the composition of one step transition rates to and from an event. Also known as Markov chain, one step transition rates are a commonly available resource in different scientific disciplines. Here we introduce a simple, effective and computationally efficient method that we termed 'Causality Inference using Composition of Transitions CICT' to reveal causal structure with high accuracy. We characterize the differences in causes,...
La Bastide-Van Gemert, Sacha; Seggers, Jorien; Haadsma, Maaike L.; Heineman, Maas Jan; Middelburg, Karin J.; Roseboom, Tessa J.; Schendelaar, Pamela; Hadders-Algra, Mijna; Van den Heuvel, Edwin R.
STUDY QUESTION: What causal relationships underlie the associations between ovarian stimulation, the IVF procedure, parental-, fertility- and child characteristics, and blood pressure (BP) and anthropometrics of 4-year-old IVF children? SUMMARY ANSWER: Causal models compatible with the data suggest
Bodner, Kimberly E.; Engelhardt, Christopher R.; Minshew, Nancy J.
2015-01-01
Studies investigating inferential reasoning in autism spectrum disorder (ASD) have focused on the ability to make socially-related inferences or inferences more generally. Important variables for intervention planning such as whether inferences depend on physical experience or the nature of social information have received less consideration. A measure of bridging inferences of physical causation, mental states, and emotional states was administered to older children, adolescents, and adults with and without ASD. The ASD group had more difficulty making inferences, particularly related to emotional understanding. Results suggest that individuals with ASD may not have the stored experiential knowledge that specific inferences depend upon or have difficulties accessing relevant experiences due to linguistic limitations. Further research is needed to tease these elements apart. PMID:25821925
Causal events enter awareness faster than non-causal events
Wagemans, Johan; de-Wit, Lee
2017-01-01
Philosophers have long argued that causality cannot be directly observed but requires a conscious inference (Hume, 1967). Albert Michotte however developed numerous visual phenomena in which people seemed to perceive causality akin to primary visual properties like colour or motion (Michotte, 1946). Michotte claimed that the perception of causality did not require a conscious, deliberate inference but, working over 70 years ago, he did not have access to the experimental methods to test this claim. Here we employ Continuous Flash Suppression (CFS)—an interocular suppression technique to render stimuli invisible (Tsuchiya & Koch, 2005)—to test whether causal events enter awareness faster than non-causal events. We presented observers with ‘causal’ and ‘non-causal’ events, and found consistent evidence that participants become aware of causal events more rapidly than non-causal events. Our results suggest that, whilst causality must be inferred from sensory evidence, this inference might be computed at low levels of perceptual processing, and does not depend on a deliberative conscious evaluation of the stimulus. This work therefore supports Michotte’s contention that, like colour or motion, causality is an immediate property of our perception of the world. PMID:28149698
Identifiability of causal effect for a simple causal model
Institute of Scientific and Technical Information of China (English)
郑忠国; 张艳艳; 童行伟
2002-01-01
Counterfactual model is put forward to discuss the causal inference in the directed acyclic graph and its corresponding identifiability is thus studied with the ancillary information based on conditional independence. It is shown that the assumption of ignorability can be expanded to the assumption of replaceability,under which the causal efiects are identifiable.
Griffiths, Thomas L.; Tenenbaum, Joshua B.
2009-01-01
Inducing causal relationships from observations is a classic problem in scientific inference, statistics, and machine learning. It is also a central part of human learning, and a task that people perform remarkably well given its notorious difficulties. People can learn causal structure in various settings, from diverse forms of data: observations…
Jennings, Wesley G; Park, MiRang; Richards, Tara N; Tomsich, Elizabeth; Gover, Angela; Powers, Ráchael A
2014-12-01
Child maltreatment is one of the most commonly examined risk factors for violence in dating relationships. Often referred to as the intergenerational transmission of violence or cycle of violence, a fair amount of research suggests that experiencing abuse during childhood significantly increases the likelihood of involvement in violent relationships later, but these conclusions are primarily based on correlational research designs. Furthermore, the majority of research linking childhood maltreatment and dating violence has focused on samples of young people from the United States. Considering these limitations, the current study uses a rigorous, propensity score matching approach to estimate the causal effect of experiencing child physical abuse on adult dating violence among a large sample of South Korean emerging adults. Results indicate that the link between child physical abuse and adult dating violence is spurious rather than causal. Study limitations and implications are discussed.
Classical planning and causal implicatures
DEFF Research Database (Denmark)
Blackburn, Patrick Rowan; Benotti, Luciana
to generate clarification requests"; as a result we can model task-oriented dialogue as an interactive process locally structured by negotiation of the underlying task. We give several examples of Frolog-human dialog, discuss the limitations imposed by the classical planning paradigm, and indicate......In this paper we motivate and describe a dialogue manager (called Frolog) which uses classical planning to infer causal implicatures. A causal implicature is a type of Gricean relation implicature, a highly context dependent form of inference. As we shall see, causal implicatures are important...
Classical planning and causal implicatures
DEFF Research Database (Denmark)
Blackburn, Patrick Rowan; Benotti, Luciana
In this paper we motivate and describe a dialogue manager (called Frolog) which uses classical planning to infer causal implicatures. A causal implicature is a type of Gricean relation implicature, a highly context dependent form of inference. As we shall see, causal implicatures are important...... to generate clarification requests"; as a result we can model task-oriented dialogue as an interactive process locally structured by negotiation of the underlying task. We give several examples of Frolog-human dialog, discuss the limitations imposed by the classical planning paradigm, and indicate...
Structural intervention distance for evaluating causal graphs
DEFF Research Database (Denmark)
Peters, Jonas; Bühlmann, Peter
2015-01-01
Causal inference relies on the structure of a graph, often a directed acyclic graph (DAG). Different graphs may result in different causal inference statements and different intervention distributions. To quantify such differences, we propose a (pre-)metric between DAGs, the structural interventi...... implementation with software code available on the first author's home page....
Designing Effective Supports for Causal Reasoning
Jonassen, David H.; Ionas, Ioan Gelu
2008-01-01
Causal reasoning represents one of the most basic and important cognitive processes that underpin all higher-order activities, such as conceptual understanding and problem solving. Hume called causality the "cement of the universe" [Hume (1739/2000). Causal reasoning is required for making predictions, drawing implications and inferences, and…
Dhakal, K; Tiezzi, F; Clay, J S; Maltecca, C
2015-04-01
Health disorders in dairy cows have a substantial effect on the profitability of a dairy enterprise because of loss in milk sales, culling of unhealthy cows, and replacement costs. Complex relationships exist between health disorders and production traits. Understanding the causal structures among these traits may help us disentangle these complex relationships. The principal objective of this study was to use producer-recorded data to explore phenotypic and genetic relationships among reproductive and metabolic health disorders and production traits in first-lactation US Holsteins. A total of 77,004 first-lactation daughters' records of 2,183 sires were analyzed using recursive models. Health data contained information on reproductive health disorders [retained placenta (RP); metritis (METR)] and metabolic health disorders [ketosis (KETO); displaced abomasum (DA)]. Production traits included mean milk yield (MY) from early lactation (mean MY from 6 to 60 d in milk and from 61 to 120 d in milk), peak milk yield (PMY), day in milk of peak milk yield (PeakD), and lactation persistency (LP). Three different sets of traits were analyzed in which recursive effects from each health disorder on culling, recursive effects of one health disorder on another health disorder and on MY, and recursive effects of each health disorder on production traits, including PeakD, PMY, and LP, were assumed. Different recursive Gaussian-threshold and threshold models were implemented in a Bayesian framework. Estimates of the structural coefficients obtained between health disorders and culling were positive; on the liability scale, the structural coefficients ranged from 0.929 to 1.590, confirming that the presence of a health disorder increased culling. Positive recursive effects of RP to METR (0.117) and of KETO to DA (0.122) were estimated, whereas recursive effects from health disorders to production traits were negligible in all cases. Heritability estimates of health disorders ranged
K-causality coincides with stable causality
Minguzzi, E
2008-01-01
It is proven that K-causality coincides with stable causality, and that in a K-causal spacetime the relation K^+ coincides with the Seifert's relation. As a consequence the causal relation "the spacetime is strongly causal and the closure of the causal relation is transitive" stays between stable causality and causal continuity.
Ellis, George FR; Pabjan, Tadeusz
2013-01-01
Written by philosophers, cosmologists, and physicists, this collection of essays deals with causality, which is a core issue for both science and philosophy. Readers will learn about different types of causality in complex systems and about new perspectives on this issue based on physical and cosmological considerations. In addition, the book includes essays pertaining to the problem of causality in ancient Greek philosophy, and to the problem of God's relation to the causal structures of nature viewed in the light of contemporary physics and cosmology.
Han, Bing; Yu, Hao; Friedberg, Mark W
2017-04-01
To evaluate the effects of the parent-reported medical home status on health care utilization, expenditures, and quality for children. Medical Expenditure Panel Survey (MEPS) during 2004-2012, including a total of 9,153 children who were followed up for 2 years in the survey. We took a causal difference-in-differences approach using inverse probability weighting and doubly robust estimators to study how changes in medical home status over a 2-year period affected children's health care outcomes. Our analysis adjusted for children's sociodemographic, health, and insurance statuses. We conducted sensitivity analyses using alternative statistical methods, different approaches to outliers and missing data, and accounting for possible common-method biases. Compared with children whose parents reported having medical homes in both years 1 and 2, those who had medical homes in year 1 but lost them in year 2 had significantly lower parent-reported ratings of health care quality and higher utilization of emergency care. Compared with children whose parents reported having no medical homes in both years, those who did not have medical homes in year 1 but gained them in year 2 had significantly higher ratings of health care quality, but no significant differences in health care expenditures and utilization. Having a medical home may help improve health care quality for children; losing a medical home may lead to higher utilization of emergency care. © Health Research and Educational Trust.
Usami, Satoshi; Hayes, Timothy; McArdle, John J
2015-01-01
The present paper focuses on the relationship between latent change score (LCS) and autoregressive cross-lagged (ARCL) factor models in longitudinal designs. These models originated from different theoretical traditions for different analytic purposes, yet they share similar mathematical forms. In this paper, we elucidate the mathematical relationship between these models and show that the LCS model is reduced to the ARCL model when fixed effects are assumed in the slope factor scores. Additionally, we provide an applied example using height and weight data from a gerontological study. Throughout the example, we emphasize caution in choosing which model (ARCL or LCS) to apply due to the risk of obtaining misleading results concerning the presence and direction of causal precedence between two variables. We suggest approaching model specification not only by comparing estimates and fit indices between the LCS and ARCL models (as well as other models) but also by giving appropriate weight to substantive and theoretical considerations, such as assessing the justifiability of the assumption of random effects in the slope factor scores.
DEFF Research Database (Denmark)
Rasmussen, Lauge Baungaard
2006-01-01
The lecture note explains how to use the causal mapping method as well as the theoretical framework aoosciated to the method......The lecture note explains how to use the causal mapping method as well as the theoretical framework aoosciated to the method...
Tsuda, T; Mino, Y; Yamamoto, E; Matsuoka, H; Babazono, A; Shigemi, J; Miyai, M
1997-07-01
Kondo's "Incidence of Minamata Disease in Communities along the Agano River, Niigata, Japan (Jap. J. Hyg. 51:599-611;1996)" is critically reviewed. The data of the article were obtained from most of the residents living in the Agano river villages where Minamata disease was discovered in June, 1965. However, sampling proportions were much different between in the population base and in the cases. The method of identification of cases from the data and the reason for the difference were not clearly demonstrated. The citations of reference articles are insufficient despite the fact that other epidemiologic studies on methyl-mercury poisoning have been reported not only in Japan, but also around the world. His "analysis of the recognized patients" is erroneous. Both the sampling scheme of information of hair mercury and the modeling of the analysis are based on Kondo's arbitrary interpretation, not on epidemiologic theory. His "analysis of the rejected applicants" is also erroneous. His calculations of the attributable proportion are incorrect and self-induced in both the assignments of data and analysis of data. Kondo has failed to study the epidemiologic theories in light of changes in the field. Therefore, his article is lacking in epidemiologic theory, a logical base and scientific inference. In Japan, epidemiologic methodology has rarely been used in studies on Minamata Disease in either Kumamoto and Niigata. The government has used neurologically specific diagnosis based on combinations of symptoms to judge the causality between each of symptoms and methyl-mercury poisoning. Epidemiologic data obtained in Minamata, Kumamoto in 1971 indicate that the criteria set by the government in 1977 have produced much more false-negative patients than false-positive patients. As a result, a huge number of symptomatic patients, including those with peripheral neuropathy or with constriction of the visual field, did not receive any help or compensation until 1995. The authors
Granger Causality and Unit Roots
DEFF Research Database (Denmark)
Rodríguez-Caballero, Carlos Vladimir; Ventosa-Santaulària, Daniel
2014-01-01
The asymptotic behavior of the Granger-causality test under stochastic nonstationarity is studied. Our results confirm that the inference drawn from the test is not reliable when the series are integrated to the first order. In the presence of deterministic components, the test statistic diverges......, eventually rejecting the null hypothesis, even when the series are independent of each other. Moreover, controlling for these deterministic elements (in the auxiliary regressions of the test) does not preclude the possibility of drawing erroneous inferences. Granger-causality tests should not be used under...
Independence and dependence in human causal reasoning.
Rehder, Bob
2014-07-01
Causal graphical models (CGMs) are a popular formalism used to model human causal reasoning and learning. The key property of CGMs is the causal Markov condition, which stipulates patterns of independence and dependence among causally related variables. Five experiments found that while adult's causal inferences exhibited aspects of veridical causal reasoning, they also exhibited a small but tenacious tendency to violate the Markov condition. They also failed to exhibit robust discounting in which the presence of one cause as an explanation of an effect makes the presence of another less likely. Instead, subjects often reasoned "associatively," that is, assumed that the presence of one variable implied the presence of other, causally related variables, even those that were (according to the Markov condition) conditionally independent. This tendency was unaffected by manipulations (e.g., response deadlines) known to influence fast and intuitive reasoning processes, suggesting that an associative response to a causal reasoning question is sometimes the product of careful and deliberate thinking. That about 60% of the erroneous associative inferences were made by about a quarter of the subjects suggests the presence of substantial individual differences in this tendency. There was also evidence that inferences were influenced by subjects' assumptions about factors that disable causal relations and their use of a conjunctive reasoning strategy. Theories that strive to provide high fidelity accounts of human causal reasoning will need to relax the independence constraints imposed by CGMs.
Granger Causality and Unit Roots
DEFF Research Database (Denmark)
Rodríguez-Caballero, Carlos Vladimir; Ventosa-Santaulària, Daniel
2014-01-01
The asymptotic behavior of the Granger-causality test under stochastic nonstationarity is studied. Our results confirm that the inference drawn from the test is not reliable when the series are integrated to the first order. In the presence of deterministic components, the test statistic diverges...
Chi, Do Minh
2001-01-01
We advance a famous principle - causality principle - but under a new view. This principle is a principium automatically leading to most fundamental laws of the nature. It is the inner origin of variation, rules evolutionary processes of things, and the answer of the quest for ultimate theories of the Universe.
Ordem temporal e inferência causal
Directory of Open Access Journals (Sweden)
Warren E. Miller
2001-11-01
Full Text Available Medidas de mudança em pares de variáveis atitudinais podem proporcionar insights Importantes sobre a estrutura dos sistemas de crenças políticas dos públicos de massa. Dados de painéis revelam evidências da grande centralidade de alguns elementos de idéias em vez de outros no contexto de constrangimento dinâmico de curto prazo. A especificação dos atributos teoricamente relevantes dos eleitores torna possível testar diferenças estruturais esperadas que conectam predisposições relacionadas a políticas e preferências por políticas; a especificação também torna possível testar proposições que envolvem os efeitos recíprocos de atitudes e preferências emergentes de voto. Algumas das especificações mais úteis revelam até que ponto a heterogeneidade da população produz uma imagem embaçada de relações quando a análise se baseia no eleitorado total, em vez de se limitar a eleitores ou subconjuntos de eleitores especificados por critérios teóricos.Measures of change in pairs of attitudinal variables can provide important insights into the structure of the political belief systems of mass publics. Panel data reveal evidence of the greater centrality of some idea elements rather than others in the context of short-term dynamic constraint. Specification of the theoretically relevant voter attributes makes it possible to test for expected structural differences connecting policy related pre-dispositions and policy preferences; specification also makes it possible to test propositions involving the reciprocal effects of attitudes and emerging vote preferences. Some of the more helpful specifications disclose the extent to which population heterogeneity produces a blurred image of relationships when analysis is based on the total electorate rather than limited to voters or subsets of voters specified by theoretical criteria.
Conditions for Confirmatory Analysis and Causal Inference.
1982-05-03
such behavior evolved because it had survival value. Other philosophers have not been so kind in dealing with Hume’s skepticism. Wittgenstein regarded...also in many other ways." _ Ludwig Wittgenstein (1980) We begin this section by restating the third principle for the logical foundation of...study in Wittgenstein . Oxford: Basil Blackwell, 1973. Dubin, R. Theory building in applied areas. In M. D. Dunnette (Ed.), Handbook of industrial and
Controlling Selection Bias in Causal Inference
2012-02-01
Candela , M. Sugiyama, A. Schwaighofer and N. Lawrence, eds.). MIT Press, Cambridge, MA, 41– 64. Hernán, M., Hernández-D́ıaz, S. and Robins, J. (2004). A...characterising learning transfer. In Dataset Shift in Machine Learning (J. Candela , M. Sugiyama, A. Schwaighofer and N. Lawrence, eds.). MIT Press, Cambridge
Thinking Fast and Slow about Causality: Response to Palinkas
Marsh, Jeanne C.
2014-01-01
Larry Palinkas advances the developing science of social work by providing an explanation of how social science research methods, both qualitative and quantitative, can improve our capacity to draw casual inferences. Understanding causal relations and making causal inferences--with the promise of being able to predict and control outcomes--is…
Exploratory Causal Analysis in Bivariate Time Series Data
McCracken, James M.
Many scientific disciplines rely on observational data of systems for which it is difficult (or impossible) to implement controlled experiments and data analysis techniques are required for identifying causal information and relationships directly from observational data. This need has lead to the development of many different time series causality approaches and tools including transfer entropy, convergent cross-mapping (CCM), and Granger causality statistics. In this thesis, the existing time series causality method of CCM is extended by introducing a new method called pairwise asymmetric inference (PAI). It is found that CCM may provide counter-intuitive causal inferences for simple dynamics with strong intuitive notions of causality, and the CCM causal inference can be a function of physical parameters that are seemingly unrelated to the existence of a driving relationship in the system. For example, a CCM causal inference might alternate between ''voltage drives current'' and ''current drives voltage'' as the frequency of the voltage signal is changed in a series circuit with a single resistor and inductor. PAI is introduced to address both of these limitations. Many of the current approaches in the times series causality literature are not computationally straightforward to apply, do not follow directly from assumptions of probabilistic causality, depend on assumed models for the time series generating process, or rely on embedding procedures. A new approach, called causal leaning, is introduced in this work to avoid these issues. The leaning is found to provide causal inferences that agree with intuition for both simple systems and more complicated empirical examples, including space weather data sets. The leaning may provide a clearer interpretation of the results than those from existing time series causality tools. A practicing analyst can explore the literature to find many proposals for identifying drivers and causal connections in times series data
Finding the Cause: Verbal Framing Helps Children Extract Causal Evidence Embedded in a Complex Scene
Butler, Lucas P.; Markman, Ellen M.
2012-01-01
In making causal inferences, children must both identify a causal problem and selectively attend to meaningful evidence. Four experiments demonstrate that verbally framing an event ("Which animals make Lion laugh?") helps 4-year-olds extract evidence from a complex scene to make accurate causal inferences. Whereas framing was unnecessary when…
Causal reasoning with mental models.
Khemlani, Sangeet S; Barbey, Aron K; Johnson-Laird, Philip N
2014-01-01
This paper outlines the model-based theory of causal reasoning. It postulates that the core meanings of causal assertions are deterministic and refer to temporally-ordered sets of possibilities: A causes B to occur means that given A, B occurs, whereas A enables B to occur means that given A, it is possible for B to occur. The paper shows how mental models represent such assertions, and how these models underlie deductive, inductive, and abductive reasoning yielding explanations. It reviews evidence both to corroborate the theory and to account for phenomena sometimes taken to be incompatible with it. Finally, it reviews neuroscience evidence indicating that mental models for causal inference are implemented within lateral prefrontal cortex.
Causal reasoning with mental models
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Sangeet eKhemlani
2014-10-01
Full Text Available This paper outlines the model-based theory of causal reasoning. It postulates that the core meanings of causal assertions are deterministic and refer to temporally-ordered sets of possibilities: A causes B to occur means that given A, B occurs, whereas A enables B to occur means that given A, it is possible for B to occur. The paper shows how mental models represent such assertions, and how these models underlie deductive, inductive, and abductive reasoning yielding explanations. It reviews evidence both to corroborate the theory and to account for phenomena sometimes taken to be incompatible with it. Finally, it reviews neuroscience evidence indicating that mental models for causal inference are implemented within lateral prefrontal cortex.
Space and time in perceptual causality
Directory of Open Access Journals (Sweden)
Benjamin Straube
2010-04-01
Full Text Available Inferring causality is a fundamental feature of human cognition that allows us to theorize about and predict future states of the world. Michotte suggested that humans automatically perceive causality based on certain perceptual features of events. However, individual differences in judgments of perceptual causality cast doubt on Michotte’s view. To gain insights in the neural basis of individual difference in the perception of causality, our participants judged causal relationships in animations of a blue ball colliding with a red ball (a launching event while fMRI-data were acquired. Spatial continuity and temporal contiguity were varied parametrically in these stimuli. We did not find consistent brain activation differences between trials judged as caused and those judged as non-caused, making it unlikely that humans have universal instantiation of perceptual causality in the brain. However, participants were slower to respond to and showed greater neural activity for violations of causality, suggesting that humans are biased to expect causal relationships when moving objects appear to interact. Our participants demonstrated considerable individual differences in their sensitivity to spatial and temporal characteristics in perceiving causality. These qualitative differences in sensitivity to time or space in perceiving causality were instantiated in individual differences in activation of the left basal ganglia or right parietal lobe, respectively. Thus, the perception that the movement of one object causes the movement of another is triggered by elemental spatial and temporal sensitivities, which themselves are instantiated in specific distinct neural networks.
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João Paulo Monteiro
2001-12-01
Full Text Available Russell's The Problems of Philosophy tries to establish a new theory of induction, at the same time that Hume is there accused of an irrational/ scepticism about induction". But a careful analysis of the theory of knowledge explicitly acknowledged by Hume reveals that, contrary to the standard interpretation in the XXth century, possibly influenced by Russell, Hume deals exclusively with causal inference (which he never classifies as "causal induction", although now we are entitled to do so, never with inductive inference in general, mainly generalizations about sensible qualities of objects ( whether, e.g., "all crows are black" or not is not among Hume's concerns. Russell's theories are thus only false alternatives to Hume's, in (1912 or in his (1948.
Thomas, R
2006-07-01
The problem of disentangling complex dynamic systems is addressed, especially with a view to identifying those variables that take part in the essential qualitative behaviour of systems. The author presents a series of reflections about the methods of formalisation together with the principles that govern the global operation of systems. In particular, a section on circuits, nuclei, and circular causality and a rather detailed description of the analytic use of the generalised asynchronous logical description, together with a brief description of its synthetic use (OreverseO logic). Some basic rules are recalled, such as the fact that a positive circuit is a necessary condition of multistationarity. Also, the interest of considering as a model, rather than a well-defined set of differential equations, a variety of systems that differ from each other only by the values of constant terms is emphasised. All these systems have a common Jacobian matrix and for all of them phase space has exactly the same structure. It means that all can be partitioned in the same way as regards the signs of the eigenvalues and thus as regards the precise nature of any steady states that might be present. Which steady states are actually present, depends on the values of terms of order zero in the ordinary differential equations (ODEs), and it is easy to find for which values of these terms a given point in phase space is steady. Models can be synthesised first at the level of the circuits involved in the Jacobian matrix (that determines which types and numbers of steady states are consistent with the model), then only at the level of terms of order zero in the ODE's (that determines which of the steady states actually exist), hence the title 'Circular casuality'.
On the origin of Hill's causal criteria.
Morabia, A
1991-09-01
The rules to assess causation formulated by the eighteenth century Scottish philosopher David Hume are compared to Sir Austin Bradford Hill's causal criteria. The strength of the analogy between Hume's rules and Hill's causal criteria suggests that, irrespective of whether Hume's work was known to Hill or Hill's predecessors, Hume's thinking expresses a point of view still widely shared by contemporary epidemiologists. The lack of systematic experimental proof to causal inferences in epidemiology may explain the analogy of Hume's and Hill's, as opposed to Popper's, logic.
Wolff, Phillip; Barbey, Aron K.
2015-01-01
Causal composition allows people to generate new causal relations by combining existing causal knowledge. We introduce a new computational model of such reasoning, the force theory, which holds that people compose causal relations by simulating the processes that join forces in the world, and compare this theory with the mental model theory (Khemlani et al., 2014) and the causal model theory (Sloman et al., 2009), which explain causal composition on the basis of mental models and structural equations, respectively. In one experiment, the force theory was uniquely able to account for people's ability to compose causal relationships from complex animations of real-world events. In three additional experiments, the force theory did as well as or better than the other two theories in explaining the causal compositions people generated from linguistically presented causal relations. Implications for causal learning and the hierarchical structure of causal knowledge are discussed. PMID:25653611
Causally nonseparable processes admitting a causal model
Feix, Adrien; Araújo, Mateus; Brukner, Časlav
2016-08-01
A recent framework of quantum theory with no global causal order predicts the existence of ‘causally nonseparable’ processes. Some of these processes produce correlations incompatible with any causal order (they violate so-called ‘causal inequalities’ analogous to Bell inequalities) while others do not (they admit a ‘causal model’ analogous to a local model). Here we show for the first time that bipartite causally nonseparable processes with a causal model exist, and give evidence that they have no clear physical interpretation. We also provide an algorithm to generate processes of this kind and show that they have nonzero measure in the set of all processes. We demonstrate the existence of processes which stop violating causal inequalities but are still causally nonseparable when mixed with a certain amount of ‘white noise’. This is reminiscent of the behavior of Werner states in the context of entanglement and nonlocality. Finally, we provide numerical evidence for the existence of causally nonseparable processes which have a causal model even when extended with an entangled state shared among the parties.
Granger causality for state-space models.
Barnett, Lionel; Seth, Anil K
2015-04-01
Granger causality has long been a prominent method for inferring causal interactions between stochastic variables for a broad range of complex physical systems. However, it has been recognized that a moving average (MA) component in the data presents a serious confound to Granger causal analysis, as routinely performed via autoregressive (AR) modeling. We solve this problem by demonstrating that Granger causality may be calculated simply and efficiently from the parameters of a state-space (SS) model. Since SS models are equivalent to autoregressive moving average models, Granger causality estimated in this fashion is not degraded by the presence of a MA component. This is of particular significance when the data has been filtered, downsampled, observed with noise, or is a subprocess of a higher dimensional process, since all of these operations-commonplace in application domains as diverse as climate science, econometrics, and the neurosciences-induce a MA component. We show how Granger causality, conditional and unconditional, in both time and frequency domains, may be calculated directly from SS model parameters via solution of a discrete algebraic Riccati equation. Numerical simulations demonstrate that Granger causality estimators thus derived have greater statistical power and smaller bias than AR estimators. We also discuss how the SS approach facilitates relaxation of the assumptions of linearity, stationarity, and homoscedasticity underlying current AR methods, thus opening up potentially significant new areas of research in Granger causal analysis.
A Quantum Probability Model of Causal Reasoning
Trueblood, Jennifer S.; Busemeyer, Jerome R.
2012-01-01
People can often outperform statistical methods and machine learning algorithms in situations that involve making inferences about the relationship between causes and effects. While people are remarkably good at causal reasoning in many situations, there are several instances where they deviate from expected responses. This paper examines three situations where judgments related to causal inference problems produce unexpected results and describes a quantum inference model based on the axiomatic principles of quantum probability theory that can explain these effects. Two of the three phenomena arise from the comparison of predictive judgments (i.e., the conditional probability of an effect given a cause) with diagnostic judgments (i.e., the conditional probability of a cause given an effect). The third phenomenon is a new finding examining order effects in predictive causal judgments. The quantum inference model uses the notion of incompatibility among different causes to account for all three phenomena. Psychologically, the model assumes that individuals adopt different points of view when thinking about different causes. The model provides good fits to the data and offers a coherent account for all three causal reasoning effects thus proving to be a viable new candidate for modeling human judgment. PMID:22593747
A quantum probability model of causal reasoning.
Trueblood, Jennifer S; Busemeyer, Jerome R
2012-01-01
People can often outperform statistical methods and machine learning algorithms in situations that involve making inferences about the relationship between causes and effects. While people are remarkably good at causal reasoning in many situations, there are several instances where they deviate from expected responses. This paper examines three situations where judgments related to causal inference problems produce unexpected results and describes a quantum inference model based on the axiomatic principles of quantum probability theory that can explain these effects. Two of the three phenomena arise from the comparison of predictive judgments (i.e., the conditional probability of an effect given a cause) with diagnostic judgments (i.e., the conditional probability of a cause given an effect). The third phenomenon is a new finding examining order effects in predictive causal judgments. The quantum inference model uses the notion of incompatibility among different causes to account for all three phenomena. Psychologically, the model assumes that individuals adopt different points of view when thinking about different causes. The model provides good fits to the data and offers a coherent account for all three causal reasoning effects thus proving to be a viable new candidate for modeling human judgment.
Inductive Reasoning about Causally Transmitted Properties
Shafto, Patrick; Kemp, Charles; Bonawitz, Elizabeth Baraff; Coley, John D.; Tenenbaum, Joshua B.
2008-01-01
Different intuitive theories constrain and guide inferences in different contexts. Formalizing simple intuitive theories as probabilistic processes operating over structured representations, we present a new computational model of category-based induction about causally transmitted properties. A first experiment demonstrates undergraduates'…
A quantum probability model of causal reasoning
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Jennifer S Trueblood
2012-05-01
Full Text Available People can often outperform statistical methods and machine learning algorithms in situations that involve making inferences about the relationship between causes and effects. While people are remarkably good at causal reasoning in many situations, there are several instances where they deviate from expected responses. This paper examines three situations where judgments related to causal inference problems produce unexpected results and describes a quantum inference model based on the axiomatic principles of quantum probability theory that can explain these effects. Two of the three phenomena arise from the comparison of predictive judgments (i.e., the conditional probability of an effect given a cause with diagnostic judgments (i.e., the conditional probability of a cause given an effect. The third phenomenon is a new finding examining order effects in predictive causal judgments. The quantum inference model uses the notion of incompatibility among different causes to account for all three phenomena. Psychologically, the model assumes that individuals adopt different points of view when thinking about different causes. The model provides good fits to the data and offers a coherent account for all three causal reasoning effects thus proving to be a viable new candidate for modeling human judgment.
Temporal and Statistical Information in Causal Structure Learning
McCormack, Teresa; Frosch, Caren; Patrick, Fiona; Lagnado, David
2015-01-01
Three experiments examined children's and adults' abilities to use statistical and temporal information to distinguish between common cause and causal chain structures. In Experiment 1, participants were provided with conditional probability information and/or temporal information and asked to infer the causal structure of a 3-variable mechanical…
Causal binding of actions to their effects.
Buehner, Marc J; Humphreys, Gruffydd R
2009-10-01
According to widely held views in cognitive science harking back to David Hume, causality cannot be perceived directly, but instead is inferred from patterns of sensory experience, and the quality of these inferences is determined by perceivable quantities such as contingency and contiguity. We report results that suggest a reversal of Hume's conjecture: People's sense of time is warped by the experience of causality. In a stimulus-anticipation task, participants' response behavior reflected a shortened experience of time in the case of target stimuli participants themselves had generated, relative to equidistant, equally predictable stimuli they had not caused. These findings suggest that causality in the mind leads to temporal binding of cause and effect, and extend and generalize beyond earlier claims of intentional binding between action and outcome.
Frisch, Mathias
2014-01-01
Much has been written on the role of causal notions and causal reasoning in the so-called 'special sciences' and in common sense. But does causal reasoning also play a role in physics? Mathias Frisch argues that, contrary to what influential philosophical arguments purport to show, the answer is yes. Time-asymmetric causal structures are as integral a part of the representational toolkit of physics as a theory's dynamical equations. Frisch develops his argument partly through a critique of anti-causal arguments and partly through a detailed examination of actual examples of causal notions in physics, including causal principles invoked in linear response theory and in representations of radiation phenomena. Offering a new perspective on the nature of scientific theories and causal reasoning, this book will be of interest to professional philosophers, graduate students, and anyone interested in the role of causal thinking in science.
Jones, Robert
2010-03-01
There are a wide range of views on causality. To some (e.g. Karl Popper) causality is superfluous. Bertrand Russell said ``In advanced science the word cause never occurs. Causality is a relic of a bygone age.'' At the other extreme Rafael Sorkin and L. Bombelli suggest that space and time do not exist but are only an approximation to a reality that is simply a discrete ordered set, a ``causal set.'' For them causality IS reality. Others, like Judea Pearl and Nancy Cartwright are seaking to build a complex fundamental theory of causality (Causality, Cambridge Univ. Press, 2000) Or perhaps a theory of causality is simply the theory of functions. This is more or less my take on causality.
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Cristina Puente Águeda
2011-10-01
Full Text Available Causality is a fundamental notion in every field of science. Since the times of Aristotle, causal relationships have been a matter of study as a way to generate knowledge and provide for explanations. In this paper I review the notion of causality through different scientific areas such as physics, biology, engineering, etc. In the scientific area, causality is usually seen as a precise relation: the same cause provokes always the same effect. But in the everyday world, the links between cause and effect are frequently imprecise or imperfect in nature. Fuzzy logic offers an adequate framework for dealing with imperfect causality, so a few notions of fuzzy causality are introduced.
Selecting appropriate cases when tracing causal mechanisms
DEFF Research Database (Denmark)
Beach, Derek; Pedersen, Rasmus Brun
2016-01-01
The last decade has witnessed resurgence in the interest in studying the causal mechanisms linking causes and outcomes in the social sciences. This article explores the overlooked implications for case selection when tracing mechanisms using in-depth case studies. Our argument is that existing case...... is to unpack the causal mechanism between X and Y, enabling causal inferences to be made because empirical evidence is provided for how the mechanism actually operated in a particular case. The in-depth, within-case tracing of how mechanisms operate in particular cases produces what can be termed mechanistic...... selection guidelines are appropriate for research aimed at making cross-case claims about causal relationships, where case selection is primarily used to control for other causes. However, existing guidelines are not in alignment with case-based research that aims to trace mechanisms, where the goal...
Synergy, redundancy and unnormalized Granger causality
Stramaglia, Sebastiano; Cortés, Jesus M; Marinazzo, Daniele
2015-01-01
We analyze by means of Granger causality the effect of synergy and redundancy in the inference (from time series data) of the information flow between subsystems of a complex network. Whilst fully conditioned Granger causality is not affected by synergy, the pairwise analysis fails to put in evidence synergetic effects. We show that maximization of the total Granger causality to a given target, over all the possible partitions of the set of driving variables, puts in evidence redundant multiplets of variables influencing the target, provided that an {\\it unnormalized} definition of Granger causality is adopted. Along the same lines we also introduce a pairwise index of synergy (w.r.t. to information flow to a third variable) which is zero when two independent sources additively influence a common target, differently from previous definitions of synergy.
The Temporal Logic of Causal Structures
Kleinberg, Samantha
2012-01-01
Computational analysis of time-course data with an underlying causal structure is needed in a variety of domains, including neural spike trains, stock price movements, and gene expression levels. However, it can be challenging to determine from just the numerical time course data alone what is coordinating the visible processes, to separate the underlying prima facie causes into genuine and spurious causes and to do so with a feasible computational complexity. For this purpose, we have been developing a novel algorithm based on a framework that combines notions of causality in philosophy with algorithmic approaches built on model checking and statistical techniques for multiple hypotheses testing. The causal relationships are described in terms of temporal logic formulae, reframing the inference problem in terms of model checking. The logic used, PCTL, allows description of both the time between cause and effect and the probability of this relationship being observed. We show that equipped with these causal f...
Identifiability of Causal Graphs using Functional Models
Peters, Jonas; Janzing, Dominik; Schoelkopf, Bernhard
2012-01-01
This work addresses the following question: Under what assumptions on the data generating process can one infer the causal graph from the joint distribution? The approach taken by conditional independence-based causal discovery methods is based on two assumptions: the Markov condition and faithfulness. It has been shown that under these assumptions the causal graph can be identified up to Markov equivalence (some arrows remain undirected) using methods like the PC algorithm. In this work we propose an alternative by defining Identifiable Functional Model Classes (IFMOCs). As our main theorem we prove that if the data generating process belongs to an IFMOC, one can identify the complete causal graph. To the best of our knowledge this is the first identifiability result of this kind that is not limited to linear functional relationships. We discuss how the IFMOC assumption and the Markov and faithfulness assumptions relate to each other and explain why we believe that the IFMOC assumption can be tested more eas...
Ortega, Pedro A
2011-01-01
Discovering causal relationships is a hard task, often hindered by the need for intervention, and often requiring large amounts of data to resolve statistical uncertainty. However, humans quickly arrive at useful causal relationships. One possible reason is that humans use strong prior knowledge; and rather than encoding hard causal relationships, they encode beliefs over causal structures, allowing for sound generalization from the observations they obtain from directly acting in the world. In this work we propose a Bayesian approach to causal induction which allows modeling beliefs over multiple causal hypotheses and predicting the behavior of the world under causal interventions. We then illustrate how this method extracts causal information from data containing interventions and observations.
Kernel canonical-correlation Granger causality for multiple time series
Wu, Guorong; Duan, Xujun; Liao, Wei; Gao, Qing; Chen, Huafu
2011-04-01
Canonical-correlation analysis as a multivariate statistical technique has been applied to multivariate Granger causality analysis to infer information flow in complex systems. It shows unique appeal and great superiority over the traditional vector autoregressive method, due to the simplified procedure that detects causal interaction between multiple time series, and the avoidance of potential model estimation problems. However, it is limited to the linear case. Here, we extend the framework of canonical correlation to include the estimation of multivariate nonlinear Granger causality for drawing inference about directed interaction. Its feasibility and effectiveness are verified on simulated data.
King, Gary; Rosen, Ori; Tanner, Martin A.
2004-09-01
This collection of essays brings together a diverse group of scholars to survey the latest strategies for solving ecological inference problems in various fields. The last half-decade has witnessed an explosion of research in ecological inference--the process of trying to infer individual behavior from aggregate data. Although uncertainties and information lost in aggregation make ecological inference one of the most problematic types of research to rely on, these inferences are required in many academic fields, as well as by legislatures and the Courts in redistricting, by business in marketing research, and by governments in policy analysis.
Causality for nonlocal phenomena
Eckstein, Michał
2015-01-01
Drawing from the theory of optimal transport we propose a rigorous notion of a causal relation for Borel probability measures on a given spacetime. To prepare the ground, we explore the borderland between causality, topology and measure theory. We provide various characterisations of the proposed causal relation, which turn out to be equivalent if the underlying spacetime has a sufficiently robust causal structure. We also present the notion of the 'Lorentz-Wasserstein distance' and study its basic properties. Finally, we discuss how various results on causality in quantum theory, aggregated around Hegerfeldt's theorem, fit into our framework.
Causal impressions: predicting when, not just whether.
Young, Michael E; Rogers, Ester T; Beckmann, Joshua S
2005-03-01
In 1739, David Hume established the so-called cues to causality--environmental cues that are important to the inference of causality. Although this descriptive account has been corroborated experimentally, it has not been established why these cues are useful, except that they may reflect statistical regularities in the environment. One of the cues to causality, covariation, helps predict whether an effect will occur, but not its time of occurrence. In the present study, evidence is provided that spatial and temporal contiguity improve an observer's ability to predict when an effect will occur, thus complementing the utility of covariation as a predictor of whether an effect will occur. While observing Michotte's (1946/1963) launching effect, participants showed greater accuracy and precision in their predictions of the onset of movement by the launched object when there was spatial and temporal contiguity. Furthermore, when auditory cues that bridged a delayed launch were included, causal ratings and predictability were similarly affected. These results suggest that the everyday inference of causality relies on our ability to predict whether and when an effect will occur.
Granger causality and transfer entropy are equivalent for Gaussian variables.
Barnett, Lionel; Barrett, Adam B; Seth, Anil K
2009-12-01
Granger causality is a statistical notion of causal influence based on prediction via vector autoregression. Developed originally in the field of econometrics, it has since found application in a broader arena, particularly in neuroscience. More recently transfer entropy, an information-theoretic measure of time-directed information transfer between jointly dependent processes, has gained traction in a similarly wide field. While it has been recognized that the two concepts must be related, the exact relationship has until now not been formally described. Here we show that for Gaussian variables, Granger causality and transfer entropy are entirely equivalent, thus bridging autoregressive and information-theoretic approaches to data-driven causal inference.
Granger causality and transfer entropy are equivalent for Gaussian variables
Barnett, Lionel; Seth, Anil
2009-01-01
Granger causality is a statistical notion of causal influence based on prediction via vector autoregression. Developed originally in the field of econometrics, it has since found application in a broader arena, particularly in neuroscience. More recently transfer entropy, an information-theoretic measure of time-directed information transfer between jointly dependent processes, has gained traction in a similarly wide field. It has always seemed plausible that the two concepts ought to be related. Here we show that for Gaussian variables, Granger causality and transfer entropy are entirely equivalent, thus bridging autoregressive and information-theoretic approaches to data-driven causal inference.
Causality and primordial tensor modes
Energy Technology Data Exchange (ETDEWEB)
Baumann, Daniel; Zaldarriaga, Matias, E-mail: dbaumann@physics.harvard.edu, E-mail: mzaldarriaga@cfa.harvard.edu [Department of Physics, Harvard University, 17 Oxford Street, Cambridge, MA 02138, U.S.A. and Center for Astrophysics, Harvard University, 60 Garden Street, Cambridge, MA 02138 (United States)
2009-06-01
We introduce the real space correlation function of B-mode polarization of the cosmic microwave background (CMB) as a probe of superhorizon tensor perturbations created by inflation. By causality, any non-inflationary mechanism for gravitational wave production after reheating, like global phase transitions or cosmic strings, must have vanishing correlations for angular separations greater than the angle subtended by the particle horizon at recombination, i.e. θ ∼> 2°. Since ordinary B-modes are defined non-locally in terms of the Stokes parameters Q and U and therefore don't have to respect causality, special care is taken to define 'causal B-tilde -modes' for the analysis. We compute the real space B-tilde -mode correlation function for inflation and discuss its detectability on superhorizon scales where it provides an unambiguous test of inflationary gravitational waves. The correct identification of inflationary tensor modes is crucial since it relates directly to the energy scale of inflation. Wrongly associating tensor modes from causal seeds with inflation would imply an incorrect inference of the energy scale of inflation. We find that the superhorizon B-tilde -mode signal is above cosmic variance for the angular range 2° < θ < 4° and is therefore in principle detectable. In practice, the signal will be challenging to measure since it requires accurately resolving the recombination peak of the B-mode power spectrum. However, a future CMB satellite (CMBPol), with noise level Δ{sub P} ≅ 1μK-arcmin and sufficient resolution to efficiently correct for lensing-induced B-modes, should be able to detect the signal at more than 3σ if the tensor-to-scalar ratio isn't smaller than r ≅ 0.01.
Buchsbaum, Daphna; Seiver, Elizabeth; Bridgers, Sophie; Gopnik, Alison
2012-01-01
A major challenge children face is uncovering the causal structure of the world around them. Previous research on children's causal inference has demonstrated their ability to learn about causal relationships in the physical environment using probabilistic evidence. However, children must also learn about causal relationships in the social environment, including discovering the causes of other people's behavior, and understanding the causal relationships between others' goal-directed actions and the outcomes of those actions. In this chapter, we argue that social reasoning and causal reasoning are deeply linked, both in the real world and in children's minds. Children use both types of information together and in fact reason about both physical and social causation in fundamentally similar ways. We suggest that children jointly construct and update causal theories about their social and physical environment and that this process is best captured by probabilistic models of cognition. We first present studies showing that adults are able to jointly infer causal structure and human action structure from videos of unsegmented human motion. Next, we describe how children use social information to make inferences about physical causes. We show that the pedagogical nature of a demonstrator influences children's choices of which actions to imitate from within a causal sequence and that this social information interacts with statistical causal evidence. We then discuss how children combine evidence from an informant's testimony and expressed confidence with evidence from their own causal observations to infer the efficacy of different potential causes. We also discuss how children use these same causal observations to make inferences about the knowledge state of the social informant. Finally, we suggest that psychological causation and attribution are part of the same causal system as physical causation. We present evidence that just as children use covariation between
Kant on causal laws and powers.
Henschen, Tobias
2014-12-01
The aim of the paper is threefold. Its first aim is to defend Eric Watkins's claim that for Kant, a cause is not an event but a causal power: a power that is borne by a substance, and that, when active, brings about its effect, i.e. a change of the states of another substance, by generating a continuous flow of intermediate states of that substance. The second aim of the paper is to argue against Watkins that the Kantian concept of causal power is not the pre-critical concept of real ground but the category of causality, and that Kant holds with Hume that causal laws cannot be inferred non-inductively (that he accordingly has no intention to show in the Second analogy or elsewhere that events fall under causal laws). The third aim of the paper is to compare the Kantian position on causality with central tenets of contemporary powers ontology: it argues that unlike the variants endorsed by contemporary powers theorists, the Kantian variants of these tenets are resistant to objections that neo-Humeans raise to these tenets.
Cortês, Marina
2013-01-01
We propose an approach to quantum theory based on the energetic causal sets, introduced in Cort\\^{e}s and Smolin (2013). Fundamental processes are causal sets whose events carry momentum and energy, which are transmitted along causal links and conserved at each event. Fundamentally there are amplitudes for such causal processes, but no space-time. An embedding of the causal processes in an emergent space-time arises only at the semiclassical level. Hence, fundamentally there are no commutation relations, no uncertainty principle and, indeed, no hbar. All that remains of quantum theory is the relationship between the absolute value squared of complex amplitudes and probabilities. Consequently, we find that neither locality, nor non locality, are primary concepts, only causality exists at the fundamental level.
2015-01-01
Uncovering causal relationships in data is a major objective of data analytics. Causal relationships are normally discovered with designed experiments, e.g. randomised controlled trials, which, however are expensive or infeasible to be conducted in many cases. Causal relationships can also be found using some well designed observational studies, but they require domain experts' knowledge and the process is normally time consuming. Hence there is a need for scalable and automated methods for c...
Kinsler, Paul
2011-01-01
I explain a simple definition of causality in widespread use, and indicate how it links to the Kramers Kronig relations. The specification of causality in terms of temporal differential eqations then shows us the way to write down dynamical models so that their causal nature in the sense used here should be obvious to all. In particular, I apply this reasoning to Maxwell's equations, which is an instructive example since their casual properties are sometimes debated.
Valente, Bruno D.; Morota, Gota; Peñagaricano, Francisco; Gianola, Daniel; Weigel, Kent; Rosa, Guilherme J. M.
2015-01-01
The term “effect” in additive genetic effect suggests a causal meaning. However, inferences of such quantities for selection purposes are typically viewed and conducted as a prediction task. Predictive ability as tested by cross-validation is currently the most acceptable criterion for comparing models and evaluating new methodologies. Nevertheless, it does not directly indicate if predictors reflect causal effects. Such evaluations would require causal inference methods that are not typical in genomic prediction for selection. This suggests that the usual approach to infer genetic effects contradicts the label of the quantity inferred. Here we investigate if genomic predictors for selection should be treated as standard predictors or if they must reflect a causal effect to be useful, requiring causal inference methods. Conducting the analysis as a prediction or as a causal inference task affects, for example, how covariates of the regression model are chosen, which may heavily affect the magnitude of genomic predictors and therefore selection decisions. We demonstrate that selection requires learning causal genetic effects. However, genomic predictors from some models might capture noncausal signal, providing good predictive ability but poorly representing true genetic effects. Simulated examples are used to show that aiming for predictive ability may lead to poor modeling decisions, while causal inference approaches may guide the construction of regression models that better infer the target genetic effect even when they underperform in cross-validation tests. In conclusion, genomic selection models should be constructed to aim primarily for identifiability of causal genetic effects, not for predictive ability. PMID:25908318
Blaisdell, A.P.; Beckers, T.
2009-01-01
The article discusses various reports published within the issue, including one on psychological approaches to causal discovery in humans, one on the representational and reasoning capacities that underlie causal cognition in rats and one on the generality of knowledge of Great Ape.
Causality in Classical Electrodynamics
Savage, Craig
2012-01-01
Causality in electrodynamics is a subject of some confusion, especially regarding the application of Faraday's law and the Ampere-Maxwell law. This has led to the suggestion that we should not teach students that electric and magnetic fields can cause each other, but rather focus on charges and currents as the causal agents. In this paper I argue…
Causality and Lifshitz Holography
Energy Technology Data Exchange (ETDEWEB)
Koroteev, Peter [Department of Physics and Astronomy, University of Minnesota, 116 Church Street S.E., Minneapolis, MN 55455 (United States)
2011-07-15
We study signal propagation in theories with Lifshitz scaling using the gravity dual and show that backgrounds with z<1 are incompatible with causality of the strongly coupled theory. We argue that causality violations in z<1 theories show up in boundary correlation functions as superluminal modes.
Causality in Europeanization Research
DEFF Research Database (Denmark)
Lynggaard, Kennet
2012-01-01
Discourse analysis as a methodology is perhaps not readily associated with substantive causality claims. At the same time the study of discourses is very much the study of conceptions of causal relations among a set, or sets, of agents. Within Europeanization research we have seen endeavours...... to develop discursive institutional analytical frameworks and something that comes close to the formulation of hypothesis on the effects of European Union (EU) policies and institutions on domestic change. Even if these efforts so far do not necessarily amount to substantive theories or claims of causality......, it suggests that discourse analysis and the study of causality are by no means opposites. The study of Europeanization discourses may even be seen as an essential step in the move towards claims of causality in Europeanization research. This chapter deals with the question of how we may move from the study...
Widlok, Thomas
2014-01-01
Cognitive Scientists interested in causal cognition increasingly search for evidence from non-Western Educational Industrial Rich Democratic people but find only very few cross-cultural studies that specifically target causal cognition. This article suggests how information about causality can be retrieved from ethnographic monographs, specifically from ethnographies that discuss agency and concepts of time. Many apparent cultural differences with regard to causal cognition dissolve when cultural extensions of agency and personhood to non-humans are taken into account. At the same time considerable variability remains when we include notions of time, linearity and sequence. The article focuses on ethnographic case studies from Africa but provides a more general perspective on the role of ethnography in research on the diversity and universality of causal cognition.
Directory of Open Access Journals (Sweden)
Ämin Baumeler
2017-07-01
Full Text Available Computation models such as circuits describe sequences of computation steps that are carried out one after the other. In other words, algorithm design is traditionally subject to the restriction imposed by a fixed causal order. We address a novel computing paradigm beyond quantum computing, replacing this assumption by mere logical consistency: We study non-causal circuits, where a fixed time structure within a gate is locally assumed whilst the global causal structure between the gates is dropped. We present examples of logically consistent non-causal circuits outperforming all causal ones; they imply that suppressing loops entirely is more restrictive than just avoiding the contradictions they can give rise to. That fact is already known for correlations as well as for communication, and we here extend it to computation.
DEFF Research Database (Denmark)
Nielsen, Max; Jensen, Frank; Setälä, Jari;
2011-01-01
This article focuses on causality in demand. A methodology where causality is imposed and tested within an empirical co-integrated demand model, not prespecified, is suggested. The methodology allows different causality of different products within the same demand system. The methodology is applied...... to fish demand. On the German market for farmed trout and substitutes, it is found that supply sources, i.e. aquaculture and fishery, are not the only determinant of causality. Storing, tightness of management and aggregation level of integrated markets might also be important. The methodological...... implication is that more explicit focus on causality in demand analyses provides improved information. The results suggest that frozen trout forms part of a large European whitefish market, where prices of fresh trout are formed on a relatively separate market. Redfish is a substitute on both markets...
Directory of Open Access Journals (Sweden)
Thomas eWidlok
2014-11-01
Full Text Available Cognitive Scientists interested in causal cognition increasingly search for evidence from non-WEIRD people but find only very few cross-cultural studies that specifically target causal cognition. This article suggests how information about causality can be retrieved from ethnographic monographs, specifically from ethnographies that discuss agency and concepts of time. Many apparent cultural differences with regard to causal cognition dissolve when cultural extensions of agency and personhood to non-humans are taken into account. At the same time considerable variability remains when we include notions of time, linearity and sequence. The article focuses on ethnographic case studies from Africa but provides a more general perspective on the role of ethnography in research on the diversity and universality of causal cognition.
DEFF Research Database (Denmark)
Bordacconi, Mats Joe; Larsen, Martin Vinæs
2014-01-01
Humans are fundamentally primed for making causal attributions based on correlations. This implies that researchers must be careful to present their results in a manner that inhibits unwarranted causal attribution. In this paper, we present the results of an experiment that suggests regression...... models – one of the primary vehicles for analyzing statistical results in political science – encourage causal interpretation. Specifically, we demonstrate that presenting observational results in a regression model, rather than as a simple comparison of means, makes causal interpretation of the results...... of equivalent results presented as either regression models or as a test of two sample means. Our experiment shows that the subjects who were presented with results as estimates from a regression model were more inclined to interpret these results causally. Our experiment implies that scholars using regression...
Trygve Haavelmo and the Emergence of Causal Calculus
2014-06-01
no person shall be subject to a penalty for failing to comply with a collection of information if it does not display a currently valid OMB control...terms, Haavelmo rejected the then-ruling paradigm that parameters are conveyors of statistical information and prepared the ground for the causal...determines that variable while keeping all other equations intact is the ba- sis of all currently used formalisms of causal inference. Haavelmo’s
On directed information theory and Granger causality graphs.
Amblard, Pierre-Olivier; Michel, Olivier J J
2011-02-01
Directed information theory deals with communication channels with feedback. When applied to networks, a natural extension based on causal conditioning is needed. We show here that measures built from directed information theory in networks can be used to assess Granger causality graphs of stochastic processes. We show that directed information theory includes measures such as the transfer entropy, and that it is the adequate information theoretic framework needed for neuroscience applications, such as connectivity inference problems.
Energy Technology Data Exchange (ETDEWEB)
Tipler, F.J.
1977-08-01
Causally symmetric spacetimes are spacetimes with J/sup +/(S) isometric to J/sup -/(S) for some set S. We discuss certain properties of these spacetimes, showing for example that, if S is a maximal Cauchy surface with matter everywhere on S, then the spacetime has singularities in both J/sup +/(S) and J/sup -/(S). We also consider totally vicious spacetimes, a class of causally symmetric spacetimes for which I/sup +/(p) =I/sup -/(p) = M for any point p in M. Two different notions of stability in general relativity are discussed, using various types of causally symmetric spacetimes as starting points for perturbations.
Zinoviev, Yury M
2012-01-01
The equations of the relativistic causal Newton gravity law for the planets of the solar system are studied in the approximation when the Sun rests at the coordinates origin and the planets do not iteract between each other.
Karabatsos, G.; Walker, S.G.
2010-01-01
Causal inference is central to educational research, where in data analysis the aim is to learn the causal effects of educational treatments on academic achievement, to evaluate educational policies and practice. Compared to a correlational analysis, a causal analysis enables policymakers to make more meaningful statements about the efficacy of…
Immirzi, Giorgio
2016-01-01
I discuss how to impose causality on spin-foam models, separating forward and backward propagation, turning a given triangulation to a 'causal set', and giving asymptotically the exponential of the Regge action, not a cosine. I show the equivalence of the prescriptions which have been proposed to achieve this. Essential to the argument is the closure condition for the 4-simplices, all made of space-like tetrahedra.
Arrighi, Pablo
2016-01-01
Consider a graph having quantum systems lying at each node. Suppose that the whole thing evolves in discrete time steps, according to a global, unitary causal operator. By causal we mean that information can only propagate at a bounded speed, with respect to the distance given by the graph. Suppose, moreover, that the graph itself is subject to the evolution, and may be driven to be in a quantum superposition of graphs---in accordance to the superposition principle. We show that these unitary causal operators must decompose as a finite-depth circuit of local unitary gates. This unifies a result on Quantum Cellular Automata with another on Reversible Causal Graph Dynamics. Along the way we formalize a notion of causality which is valid in the context of quantum superpositions of time-varying graphs, and has a number of good properties. Keywords: Quantum Lattice Gas Automata, Block-representation, Curtis-Hedlund-Lyndon, No-signalling, Localizability, Quantum Gravity, Quantum Graphity, Causal Dynamical Triangula...
Causal Imprinting in Causal Structure Learning
Taylor, Eric G.; Ahn, Woo-kyoung
2012-01-01
Suppose one observes a correlation between two events, B and C, and infers that B causes C. Later one discovers that event A explains away the correlation between B and C. Normatively, one should now dismiss or weaken the belief that B causes C. Nonetheless, participants in the current study who observed a positive contingency between B and C…
Causal Imprinting in Causal Structure Learning
Taylor, Eric G.; Ahn, Woo-kyoung
2012-01-01
Suppose one observes a correlation between two events, B and C, and infers that B causes C. Later one discovers that event A explains away the correlation between B and C. Normatively, one should now dismiss or weaken the belief that B causes C. Nonetheless, participants in the current study who observed a positive contingency between B and C…
Causality discovery technology
Chen, M.; Ertl, T.; Jirotka, M.; Trefethen, A.; Schmidt, A.; Coecke, B.; Bañares-Alcántara, R.
2012-11-01
Causality is the fabric of our dynamic world. We all make frequent attempts to reason causation relationships of everyday events (e.g., what was the cause of my headache, or what has upset Alice?). We attempt to manage causality all the time through planning and scheduling. The greatest scientific discoveries are usually about causality (e.g., Newton found the cause for an apple to fall, and Darwin discovered natural selection). Meanwhile, we continue to seek a comprehensive understanding about the causes of numerous complex phenomena, such as social divisions, economic crisis, global warming, home-grown terrorism, etc. Humans analyse and reason causality based on observation, experimentation and acquired a priori knowledge. Today's technologies enable us to make observations and carry out experiments in an unprecedented scale that has created data mountains everywhere. Whereas there are exciting opportunities to discover new causation relationships, there are also unparalleled challenges to benefit from such data mountains. In this article, we present a case for developing a new piece of ICT, called Causality Discovery Technology. We reason about the necessity, feasibility and potential impact of such a technology.
Directory of Open Access Journals (Sweden)
Túlio Aguiar
2003-12-01
Full Text Available Neste artigo, examinamos o aspecto assimétrico da relação causal, confrontando-o com o ponto de vista humiano e neo-humiano. Seguindo Hausman e Ehring, favorecemos uma abordagem situacional para a assimetria causal. Nós exploramos a análise do famoso exemplo do mastro (Flagpole, esclarecendo as conexões entre causação e explicação. Nosso diagnóstico geral é que a tradição neo-humiana supõe, equivocadamente, que as relações nômicas, com exceção de pequenos detalhes, exaurem as relações causais.This paper examines the asymmetrical aspect of causal relation, confronting it to Humean and Neo-Humean's view. Following Hausman and Ehring, we favor a situational approach to causal asymmetry. We explore the Hausman's analysis of flagpole's example, clearing the connexions between causation and explanation. Our general diagnosis is that the Neo-humean tradition wrongly supposes that nomic relations, with the exception of minor details, exhaust the causal relations.
Biased causal inseparable game
Bhattacharya, Some Sankar
2015-01-01
Here we study the \\emph{causal inseparable} game introduced in [\\href{http://www.nature.com/ncomms/journal/v3/n10/full/ncomms2076.html}{Nat. Commun. {\\bf3}, 1092 (2012)}], but it's biased version. Two separated parties, Alice and Bob, generate biased bits (say input bit) in their respective local laboratories. Bob generates another biased bit (say decision bit) which determines their goal: whether Alice has to guess Bob's bit or vice-verse. Under the assumption that events are ordered with respect to some global causal relation, we show that the success probability of this biased causal game is upper bounded, giving rise to \\emph{biased causal inequality} (BCI). In the \\emph{process matrix} formalism, which is locally in agreement with quantum physics but assume no global causal order, we show that there exist \\emph{inseparable} process matrices that violate the BCI for arbitrary bias in the decision bit. In such scenario we also derive the maximal violation of the BCI under local operations involving tracele...
Arrighi, Pablo
2012-01-01
We generalize the theory of Cellular Automata to arbitrary, time-varying graphs. In other words we formalize, and prove theorems about, the intuitive idea of a labelled graph which evolves in time - but under the natural constraint that information can only ever be transmitted at a bounded speed, with respect to the distance given by the graph. The notion of translation-invariance is also generalized. The definition we provide for these `causal graph dynamics' is simple and axiomatic. The theorems we provide also show that it is robust. For instance, causal graph dynamics are stable under composition and under restriction to radius one. In the finite case some fundamental facts of Cellular Automata theory carry through: causal graph dynamics admit a characterization as continuous functions and they are stable under inversion. The provided examples suggest a wide range of applications of this mathematical object, from complex systems science to theoretical physics. Keywords: Dynamical networks, Boolean network...
Kaufmann, Stefan
2013-08-01
The rise of causality and the attendant graph-theoretic modeling tools in the study of counterfactual reasoning has had resounding effects in many areas of cognitive science, but it has thus far not permeated the mainstream in linguistic theory to a comparable degree. In this study I show that a version of the predominant framework for the formal semantic analysis of conditionals, Kratzer-style premise semantics, allows for a straightforward implementation of the crucial ideas and insights of Pearl-style causal networks. I spell out the details of such an implementation, focusing especially on the notions of intervention on a network and backtracking interpretations of counterfactuals.
Complementarity, causality, and explanation
Losee, John
2013-01-01
Prior to the work of Niels Bohr, discussions on the relationship of cause and effect presupposed that successful causal attribution implies explanation. The success of quantum theory challenged this presupposition. In this succinct review of the history of these discussions, John Losee presents the philosophical background of debates over the cause-effect relation. He reviews the positions of Aristotle, René Descartes, Isaac Newton, David Hume, Immanuel Kant, and John Stuart Mill. He shows how nineteenth-century theories in physics and chemistry were informed by a dominant theory of causality
The Trend-in-trend Research Design for Causal Inference.
Ji, Xinyao; Small, Dylan S; Leonard, Charles E; Hennessy, Sean
2017-07-01
Cohort studies can be biased by unmeasured confounding. We propose a hybrid ecologic-epidemiologic design called the trend-in-trend design, which requires a strong time trend in exposure, but is unbiased unless there are unmeasured factors affecting outcome for which there are time trends in prevalence that are correlated with time trends in exposure across strata with different exposure trends. Thus, the conditions under which the trend-in-trend study is biased are a subset of those under which a cohort study is biased. The trend-in-trend design first divides the study population into strata based on the cumulative probability of exposure given covariates, which effectively stratifies on time trend in exposure, provided there is a trend. Next, a covariates-free maximum likelihood model estimates the odds ratio (OR) using data on exposure prevalence and outcome frequency within cumulative probability of exposure strata, across multiple periods. In simulations, the trend-in-trend design produced ORs with negligible bias in the presence of unmeasured confounding. In empiric applications, trend-in-trend reproduced the known positive association between rofecoxib and myocardial infarction (observed OR: 1.2, 95% confidence interval: 1.1, 1.4), and known null associations between rofecoxib and severe hypoglycemia (OR = 1.1 [0.92, 1.3]) and nonvertebral fracture (OR = 0.84 [0.64, 1.1]). The trend-in-trend method may be useful in settings where there is a strong time trend in exposure, such as a newly approved drug or other medical intervention. See video abstract at, http://links.lww.com/EDE/B178.
The Use of Moderator Effects for Drawing Generalized Causal Inferences
Jaciw, Andrew
2011-01-01
This work has a three-fold purpose. The first is to set out the rationale for an alternative approach for assessing the generalizability of research findings. (It is related to but not equivalent to the CE method.) The second is to formalize this approach through a quantitative model. The third is to apply the approach to the results of the…
Perceiving individuals and groups: Expectancies, dispositional inferences, and causal attributions
Susskind, J; Maurer, K.; Thakkar, V.; Hamilton, DL; Sherman, JW
1999-01-01
Two experiments investigated differences in forming impressions of individual and group targets. Experiment 1 showed that when forming an impression of an individual, perceivers made more extreme trait judgments, made those judgments more quickly and with greater confidence, and recalled more information than when the impression target was a group. Experiment 2 showed that when participants were forming an impression of an individual, expectancy-inconsistent behaviors spontaneously triggered ...
Creators' Intentions Bias Judgments of Function Independently from Causal Inferences
Chaigneau, Sergio E.; Castillo, Ramon D.; Martinez, Luis
2008-01-01
Participants learned about novel artifacts that were created for function X, but later used for function Y. When asked to rate the extent to which X and Y were a given artifact's function, participants consistently rated X higher than Y. In Experiments 1 and 2, participants were also asked to rate artifacts' efficiency to perform X and Y. This…
Yang, Xia; Deignan, Joshua L; Qi, Hongxiu; Zhu, Jun; Qian, Su; Zhong, Judy; Torosyan, Gevork; Majid, Sana; Falkard, Brie; Kleinhanz, Robert R; Karlsson, Jenny; Castellani, Lawrence W.; Mumick, Sheena; Wang, Kai; Xie, Tao
2009-01-01
A major task in dissecting the genetics of complex traits is to identify causal genes for disease phenotypes. We previously developed a method to infer causal relationships among genes through the integration of DNA variation, gene transcription, and phenotypic information. Here we validated our method through the characterization of transgenic and knockout mouse models of candidate genes that were predicted to be causal for abdominal obesity. Perturbation of eight out of the nine genes, with...
Spectral Causality Measures for Land-Atmosphere Interactions
Casagrande, Erik; Mueller, Brigitte; Miralles, Diego; Entekhabi, Dara; Molini, Annalisa
2014-05-01
This talk addresses the problem of detecting and inferring the strength and directionality (i.e. causality) of Land-Atmosphere (L-A) interactions from available observations of climatic and hydrological variables. Our still incomplete understanding of L-A interactions - their inherent complexity, non-stationary features and multi-scale character - is in fact one of the main sources of uncertainty in current climate modeling, with strong implications for our ability to predict in an accurate way future climate. We apply different causality-detection techniques, based on spectral methods and continuous wavelet transform, to unravel the coupling between soil moisture and air temperature, and to give evidence of the importance of soil moisture memory for climate. The proposed mathematical techniques have previously shown the ability of disentangling directional couplings within synthetic multi-scale processes. Also, the frequency-domain causal techniques presented here show several advantages in analyzing L-A couplings and feedbacks when compared to classic methods based on linear correlations, since they are explicitly designed to detect causal couplings and to infer multi-scale and non-stationary relationships. By applying these spectral causal metrics to newly developed satellite-based products and climate reanalysis data, we uncover the contribution of processes acting at different time scales to the build-up of global soil moisture-temperature coupling hot spots, addressing at the same time possible causal effects in land-atmosphere interactions.
Rohatgi, Vijay K
2003-01-01
Unified treatment of probability and statistics examines and analyzes the relationship between the two fields, exploring inferential issues. Numerous problems, examples, and diagrams--some with solutions--plus clear-cut, highlighted summaries of results. Advanced undergraduate to graduate level. Contents: 1. Introduction. 2. Probability Model. 3. Probability Distributions. 4. Introduction to Statistical Inference. 5. More on Mathematical Expectation. 6. Some Discrete Models. 7. Some Continuous Models. 8. Functions of Random Variables and Random Vectors. 9. Large-Sample Theory. 10. General Meth
Understanding Causal Coherence Relations
Mulder, G.
2008-01-01
The research reported in this dissertation focuses on the cognitive processes and representations involved in understanding causal coherence relations in text. Coherence relations are the meaning relations between the information units in the text, such as Cause-Consequence. These relations can be m
Causal Responsibility and Counterfactuals
Lagnado, David A.; Gerstenberg, Tobias; Zultan, Ro'i
2013-01-01
How do people attribute responsibility in situations where the contributions of multiple agents combine to produce a joint outcome? The prevalence of over-determination in such cases makes this a difficult problem for counterfactual theories of causal responsibility. In this article, we explore a general framework for assigning responsibility in…
Causality: Physics and Philosophy
Chatterjee, Atanu
2013-01-01
Nature is a complex causal network exhibiting diverse forms and species. These forms or rather systems are physically open, structurally complex and naturally adaptive. They interact with the surrounding media by operating a positive-feedback loop through which, they adapt, organize and self-organize themselves in response to the ever-changing…
Explaining through causal mechanisms
Biesbroek, Robbert; Dupuis, Johann; Wellstead, Adam
2017-01-01
This paper synthesizes and builds on recent critiques of the resilience literature; namely that the field has largely been unsuccessful in capturing the complexity of governance processes, in particular cause–effects relationships. We demonstrate that absence of a causal model is reflected in the
Enhancing scientific reasoning by refining students' models of multivariable causality
Keselman, Alla
Inquiry learning as an educational method is gaining increasing support among elementary and middle school educators. In inquiry activities at the middle school level, students are typically asked to conduct investigations and infer causal relationships about multivariable causal systems. In these activities, students usually demonstrate significant strategic weaknesses and insufficient metastrategic understanding of task demands. Present work suggests that these weaknesses arise from students' deficient mental models of multivariable causality, in which effects of individual features are neither additive, nor constant. This study is an attempt to develop an intervention aimed at enhancing scientific reasoning by refining students' models of multivariable causality. Three groups of students engaged in a scientific investigation activity over seven weekly sessions. By creating unique combinations of five features potentially involved in earthquake mechanism and observing associated risk meter readings, students had to find out which of the features were causal, and to learn to predict earthquake risk. Additionally, students in the instructional and practice groups engaged in self-directed practice in making scientific predictions. The instructional group also participated in weekly instructional sessions on making predictions based on multivariable causality. Students in the practice and instructional conditions showed small to moderate improvement in their attention to the evidence and in their metastrategic ability to recognize effective investigative strategies in the work of other students. They also demonstrated a trend towards making a greater number of valid inferences than the control group students. Additionally, students in the instructional condition showed significant improvement in their ability to draw inferences based on multiple records. They also developed more accurate knowledge about non-causal features of the system. These gains were maintained
Detectability of Granger causality for subsampled continuous-time neurophysiological processes.
Barnett, Lionel; Seth, Anil K
2017-01-01
Granger causality is well established within the neurosciences for inference of directed functional connectivity from neurophysiological data. These data usually consist of time series which subsample a continuous-time biophysiological process. While it is well known that subsampling can lead to imputation of spurious causal connections where none exist, less is known about the effects of subsampling on the ability to reliably detect causal connections which do exist. We present a theoretical analysis of the effects of subsampling on Granger-causal inference. Neurophysiological processes typically feature signal propagation delays on multiple time scales; accordingly, we base our analysis on a distributed-lag, continuous-time stochastic model, and consider Granger causality in continuous time at finite prediction horizons. Via exact analytical solutions, we identify relationships among sampling frequency, underlying causal time scales and detectability of causalities. We reveal complex interactions between the time scale(s) of neural signal propagation and sampling frequency. We demonstrate that detectability decays exponentially as the sample time interval increases beyond causal delay times, identify detectability "black spots" and "sweet spots", and show that downsampling may potentially improve detectability. We also demonstrate that the invariance of Granger causality under causal, invertible filtering fails at finite prediction horizons, with particular implications for inference of Granger causality from fMRI data. Our analysis emphasises that sampling rates for causal analysis of neurophysiological time series should be informed by domain-specific time scales, and that state-space modelling should be preferred to purely autoregressive modelling. On the basis of a very general model that captures the structure of neurophysiological processes, we are able to help identify confounds, and offer practical insights, for successful detection of causal connectivity
Causal diagrams for physical models
Kinsler, Paul
2015-01-01
I present a scheme of drawing causal diagrams based on physically motivated mathematical models expressed in terms of temporal differential equations. They provide a means of better understanding the processes and causal relationships contained within such systems.
Information causality and noisy computations
Energy Technology Data Exchange (ETDEWEB)
Hsu, Li-Yi [Department of Physics, Chung Yuan Christian University, Chung-li 32023, Taiwan (China); Yu, I-Ching; Lin, Feng-Li [Department of Physics, National Taiwan Normal University, Taipei 116, Taiwan (China)
2011-10-15
We reformulate the information causality in a more general framework by adopting the results of signal propagation and computation in a noisy circuit. In our framework, the information causality leads to a broad class of Tsirelson inequalities. This fact allows us to subject information causality to experimental scrutiny. A no-go theorem for reliable nonlocal computation is also derived. Information causality prevents any physical circuit from performing reliable computations.
Causality and Causal Inference in Social Work: Quantitative and Qualitative Perspectives
Palinkas, Lawrence A.
2014-01-01
Achieving the goals of social work requires matching a specific solution to a specific problem. Understanding why the problem exists and why the solution should work requires a consideration of cause and effect. However, it is unclear whether it is desirable for social workers to identify cause and effect, whether it is possible for social workers…
Spectral Geometry and Causality
Kopf, T
1996-01-01
For a physical interpretation of a theory of quantum gravity, it is necessary to recover classical spacetime, at least approximately. However, quantum gravity may eventually provide classical spacetimes by giving spectral data similar to those appearing in noncommutative geometry, rather than by giving directly a spacetime manifold. It is shown that a globally hyperbolic Lorentzian manifold can be given by spectral data. A new phenomenon in the context of spectral geometry is observed: causal relationships. The employment of the causal relationships of spectral data is shown to lead to a highly efficient description of Lorentzian manifolds, indicating the possible usefulness of this approach. Connections to free quantum field theory are discussed for both motivation and physical interpretation. It is conjectured that the necessary spectral data can be generically obtained from an effective field theory having the fundamental structures of generalized quantum mechanics: a decoherence functional and a choice of...
Pitalúa-García, Damián
2012-01-01
How much information can a transmitted physical system fundamentally communicate? We introduce the principle of quantum information causality, which states the maximum amount of quantum information that a quantum system can communicate as a function of its dimension, independently of any previously shared quantum physical resources. We present a new quantum information task, whose success probability is upper bounded by the new principle, and show that an optimal strategy to perform it combin...
Liang, X San
2014-01-01
Given two time series, can one tell, in a rigorous and quantitative way, the cause and effect between them? Based on a recently rigorized physical notion namely information flow, we arrive at a concise formula and give this challenging question, which is of wide concern in different disciplines, a positive answer. Here causality is measured by the time rate of change of information flowing from one series, say, X2, to another, X1. The measure is asymmetric between the two parties and, particularly, if the process underlying X1 does not depend on X2, then the resulting causality from X2 to X1 vanishes. The formula is tight in form, involving only the commonly used statistics, sample covariances. It has been validated with touchstone series purportedly generated with one-way causality. It has also been applied to the investigation of real world problems; an example presented here is the cause-effect relation between two climate modes, El Ni\\~no and Indian Ocean Dipole, which have been linked to the hazards in f...
Dynamic causal modelling revisited.
Friston, K J; Preller, Katrin H; Mathys, Chris; Cagnan, Hayriye; Heinzle, Jakob; Razi, Adeel; Zeidman, Peter
2017-02-17
This paper revisits the dynamic causal modelling of fMRI timeseries by replacing the usual (Taylor) approximation to neuronal dynamics with a neural mass model of the canonical microcircuit. This provides a generative or dynamic causal model of laminar specific responses that can generate haemodynamic and electrophysiological measurements. In principle, this allows the fusion of haemodynamic and (event related or induced) electrophysiological responses. Furthermore, it enables Bayesian model comparison of competing hypotheses about physiologically plausible synaptic effects; for example, does attentional modulation act on superficial or deep pyramidal cells - or both? In this technical note, we describe the resulting dynamic causal model and provide an illustrative application to the attention to visual motion dataset used in previous papers. Our focus here is on how to answer long-standing questions in fMRI; for example, do haemodynamic responses reflect extrinsic (afferent) input from distant cortical regions, or do they reflect intrinsic (recurrent) neuronal activity? To what extent do inhibitory interneurons contribute to neurovascular coupling? What is the relationship between haemodynamic responses and the frequency of induced neuronal activity? This paper does not pretend to answer these questions; rather it shows how they can be addressed using neural mass models of fMRI timeseries. Copyright © 2017 The Authors. Published by Elsevier Inc. All rights reserved.
Ma, Sisi; Kemmeren, Patrick; Aliferis, Constantin F; Statnikov, Alexander
2016-03-04
Reverse-engineering of causal pathways that implicate diseases and vital cellular functions is a fundamental problem in biomedicine. Discovery of the local causal pathway of a target variable (that consists of its direct causes and direct effects) is essential for effective intervention and can facilitate accurate diagnosis and prognosis. Recent research has provided several active learning methods that can leverage passively observed high-throughput data to draft causal pathways and then refine the inferred relations with a limited number of experiments. The current study provides a comprehensive evaluation of the performance of active learning methods for local causal pathway discovery in real biological data. Specifically, 54 active learning methods/variants from 3 families of algorithms were applied for local causal pathways reconstruction of gene regulation for 5 transcription factors in S. cerevisiae. Four aspects of the methods' performance were assessed, including adjacency discovery quality, edge orientation accuracy, complete pathway discovery quality, and experimental cost. The results of this study show that some methods provide significant performance benefits over others and therefore should be routinely used for local causal pathway discovery tasks. This study also demonstrates the feasibility of local causal pathway reconstruction in real biological systems with significant quality and low experimental cost.
Emmert-Streib, Frank; Glazko, Galina V; Altay, Gökmen; de Matos Simoes, Ricardo
2012-01-01
In this paper, we present a systematic and conceptual overview of methods for inferring gene regulatory networks from observational gene expression data. Further, we discuss two classic approaches to infer causal structures and compare them with contemporary methods by providing a conceptual categorization thereof. We complement the above by surveying global and local evaluation measures for assessing the performance of inference algorithms.
Kushnir, Tamar; Vredenburgh, Christopher; Schneider, Lauren A.
2013-01-01
Preschoolers use outcomes of actions to infer causal properties of objects. We asked whether they also use them to infer others' causal abilities and knowledge. In Experiment 1, preschoolers saw 2 informants, 2 tools, and 2 broken toys. One informant (the "labeler") knew the names of the tools, but his actions failed to activate the toys. The…
On the Validity of Covariate Adjustment for Estimating Causal Effects
Shpitser, Ilya; Robins, James M
2012-01-01
Identifying effects of actions (treatments) on outcome variables from observational data and causal assumptions is a fundamental problem in causal inference. This identification is made difficult by the presence of confounders which can be related to both treatment and outcome variables. Confounders are often handled, both in theory and in practice, by adjusting for covariates, in other words considering outcomes conditioned on treatment and covariate values, weighed by probability of observing those covariate values. In this paper, we give a complete graphical criterion for covariate adjustment, which we term the adjustment criterion, and derive some interesting corollaries of the completeness of this criterion.
Architecture of explanatory inference in the human prefrontal cortex.
Barbey, Aron K; Patterson, Richard
2011-01-01
Causal reasoning is a ubiquitous feature of human cognition. We continuously seek to understand, at least implicitly and often explicitly, the causal scenarios in which we live, so that we may anticipate what will come next, plan a potential response and envision its outcome, decide among possible courses of action in light of their probable outcomes, make midstream adjustments in our goal-related activities as our situation changes, and so on. A considerable body of research shows that the lateral prefrontal cortex (PFC) is crucial for causal reasoning, but also that there are significant differences in the manner in which ventrolateral PFC, dorsolateral PFC, and anterolateral PFC support causal reasoning. We propose, on the basis of research on the evolution, architecture, and functional organization of the lateral PFC, a general framework for understanding its roles in the many and varied sorts of causal reasoning carried out by human beings. Specifically, the ventrolateral PFC supports the generation of basic causal explanations and inferences; dorsolateral PFC supports the evaluation of these scenarios in light of some given normative standard (e.g., of plausibility or correctness in light of real or imagined causal interventions); and anterolateral PFC supports explanation and inference at an even higher level of complexity, coordinating the processes of generation and evaluation with further cognitive processes, and especially with computations of hedonic value and emotional implications of possible behavioral scenarios - considerations that are often critical both for understanding situations causally and for deciding about our own courses of action.
Quantum information causality.
Pitalúa-García, Damián
2013-05-24
How much information can a transmitted physical system fundamentally communicate? We introduce the principle of quantum information causality, which states the maximum amount of quantum information that a quantum system can communicate as a function of its dimension, independently of any previously shared quantum physical resources. We present a new quantum information task, whose success probability is upper bounded by the new principle, and show that an optimal strategy to perform it combines the quantum teleportation and superdense coding protocols with a task that has classical inputs.
Howard, Eric M
2016-01-01
We analyze spacetimes with horizons and study the thermodynamic aspects of causal horizons, suggesting that the resemblance between gravitational and thermodynamic systems has a deeper quantum mechanical origin. We find that the observer dependence of such horizons is a direct consequence of associating a temperature and entropy to a spacetime. The geometrical picture of a horizon acting as a one-way membrane for information flow can be accepted as a natural interpretation of assigning a quantum field theory to a spacetime with boundary, ultimately leading to a close connection with thermodynamics.
Assessing statistical significance in causal graphs
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Chindelevitch Leonid
2012-02-01
Full Text Available Abstract Background Causal graphs are an increasingly popular tool for the analysis of biological datasets. In particular, signed causal graphs--directed graphs whose edges additionally have a sign denoting upregulation or downregulation--can be used to model regulatory networks within a cell. Such models allow prediction of downstream effects of regulation of biological entities; conversely, they also enable inference of causative agents behind observed expression changes. However, due to their complex nature, signed causal graph models present special challenges with respect to assessing statistical significance. In this paper we frame and solve two fundamental computational problems that arise in practice when computing appropriate null distributions for hypothesis testing. Results First, we show how to compute a p-value for agreement between observed and model-predicted classifications of gene transcripts as upregulated, downregulated, or neither. Specifically, how likely are the classifications to agree to the same extent under the null distribution of the observed classification being randomized? This problem, which we call "Ternary Dot Product Distribution" owing to its mathematical form, can be viewed as a generalization of Fisher's exact test to ternary variables. We present two computationally efficient algorithms for computing the Ternary Dot Product Distribution and investigate its combinatorial structure analytically and numerically to establish computational complexity bounds. Second, we develop an algorithm for efficiently performing random sampling of causal graphs. This enables p-value computation under a different, equally important null distribution obtained by randomizing the graph topology but keeping fixed its basic structure: connectedness and the positive and negative in- and out-degrees of each vertex. We provide an algorithm for sampling a graph from this distribution uniformly at random. We also highlight theoretical
Johnston, Steven
2010-01-01
Causal set theory provides a model of discrete spacetime in which spacetime events are represented by elements of a causal set---a locally finite, partially ordered set in which the partial order represents the causal relationships between events. The work presented here describes a model for matter on a causal set, specifically a theory of quantum scalar fields on a causal set spacetime background. The work starts with a discrete path integral model for particles on a causal set. Here quantum mechanical amplitudes are assigned to trajectories within the causal set. By summing these over all trajectories between two spacetime events we obtain a causal set particle propagator. With a suitable choice of amplitudes this is shown to agree (in an appropriate sense) with the retarded propagator for the Klein-Gordon equation in Minkowski spacetime. This causal set propagator is then used to define a causal set analogue of the Pauli-Jordan function that appears in continuum quantum field theories. A quantum scalar fi...
Causality and Micro-Causality in Curved Spacetime
Hollowood, Timothy J.; Shore, Graham M.
2007-01-01
We consider how causality and micro-causality are realised in QED in curved spacetime. The photon propagator is found to exhibit novel non-analytic behaviour due to vacuum polarization, which invalidates the Kramers-Kronig dispersion relation and calls into question the validity of micro-causality in curved spacetime. This non-analyticity is ultimately related to the generic focusing nature of congruences of geodesics in curved spacetime, as implied by the null energy condition, and the exist...
Monteiro, Wuelton Marcelo; Alexandre, Márcia Araújo; Siqueira, André; Melo, Gisely; Romero, Gustavo Adolfo Sierra; d'Ávila, Efrem; Benzecry, Silvana Gomes; Leite, Heitor Pons; Lacerda, Marcus Vinícius Guimarães
2016-01-01
The benign characteristics formerly attributed to Plasmodium vivax infections have recently changed owing to the increasing number of reports of severe vivax malaria resulting in a broad spectrum of clinical complications, probably including undernutrition. Causal inference is a complex process, and arriving at a tentative inference of the causal or non-causal nature of an association is a subjective process limited by the existing evidence. Applying classical epidemiology principles, such as the Bradford Hill criteria, may help foster an understanding of causality and lead to appropriate interventions being proposed that may improve quality of life and decrease morbidity in neglected populations. Here, we examined these criteria in the context of the available data suggesting that vivax malaria may substantially contribute to childhood malnutrition. We found the data supported a role for P. vivax in the etiology of undernutrition in endemic areas. Thus, the application of modern causal inference tools, in future studies, may be useful in determining causation.
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Wuelton Marcelo Monteiro
2016-06-01
Full Text Available Abstract: The benign characteristics formerly attributed to Plasmodium vivax infections have recently changed owing to the increasing number of reports of severe vivax malaria resulting in a broad spectrum of clinical complications, probably including undernutrition. Causal inference is a complex process, and arriving at a tentative inference of the causal or non-causal nature of an association is a subjective process limited by the existing evidence. Applying classical epidemiology principles, such as the Bradford Hill criteria, may help foster an understanding of causality and lead to appropriate interventions being proposed that may improve quality of life and decrease morbidity in neglected populations. Here, we examined these criteria in the context of the available data suggesting that vivax malaria may substantially contribute to childhood malnutrition. We found the data supported a role for P. vivax in the etiology of undernutrition in endemic areas. Thus, the application of modern causal inference tools, in future studies, may be useful in determining causation.
Friston, K J; Harrison, L; Penny, W
2003-08-01
In this paper we present an approach to the identification of nonlinear input-state-output systems. By using a bilinear approximation to the dynamics of interactions among states, the parameters of the implicit causal model reduce to three sets. These comprise (1) parameters that mediate the influence of extrinsic inputs on the states, (2) parameters that mediate intrinsic coupling among the states, and (3) [bilinear] parameters that allow the inputs to modulate that coupling. Identification proceeds in a Bayesian framework given known, deterministic inputs and the observed responses of the system. We developed this approach for the analysis of effective connectivity using experimentally designed inputs and fMRI responses. In this context, the coupling parameters correspond to effective connectivity and the bilinear parameters reflect the changes in connectivity induced by inputs. The ensuing framework allows one to characterise fMRI experiments, conceptually, as an experimental manipulation of integration among brain regions (by contextual or trial-free inputs, like time or attentional set) that is revealed using evoked responses (to perturbations or trial-bound inputs, like stimuli). As with previous analyses of effective connectivity, the focus is on experimentally induced changes in coupling (cf., psychophysiologic interactions). However, unlike previous approaches in neuroimaging, the causal model ascribes responses to designed deterministic inputs, as opposed to treating inputs as unknown and stochastic.
Experimental test of nonlocal causality.
Ringbauer, Martin; Giarmatzi, Christina; Chaves, Rafael; Costa, Fabio; White, Andrew G; Fedrizzi, Alessandro
2016-08-01
Explaining observations in terms of causes and effects is central to empirical science. However, correlations between entangled quantum particles seem to defy such an explanation. This implies that some of the fundamental assumptions of causal explanations have to give way. We consider a relaxation of one of these assumptions, Bell's local causality, by allowing outcome dependence: a direct causal influence between the outcomes of measurements of remote parties. We use interventional data from a photonic experiment to bound the strength of this causal influence in a two-party Bell scenario, and observational data from a Bell-type inequality test for the considered models. Our results demonstrate the incompatibility of quantum mechanics with a broad class of nonlocal causal models, which includes Bell-local models as a special case. Recovering a classical causal picture of quantum correlations thus requires an even more radical modification of our classical notion of cause and effect.
Experimental test of nonlocal causality
Ringbauer, Martin; Giarmatzi, Christina; Chaves, Rafael; Costa, Fabio; White, Andrew G.; Fedrizzi, Alessandro
2016-01-01
Explaining observations in terms of causes and effects is central to empirical science. However, correlations between entangled quantum particles seem to defy such an explanation. This implies that some of the fundamental assumptions of causal explanations have to give way. We consider a relaxation of one of these assumptions, Bell’s local causality, by allowing outcome dependence: a direct causal influence between the outcomes of measurements of remote parties. We use interventional data from a photonic experiment to bound the strength of this causal influence in a two-party Bell scenario, and observational data from a Bell-type inequality test for the considered models. Our results demonstrate the incompatibility of quantum mechanics with a broad class of nonlocal causal models, which includes Bell-local models as a special case. Recovering a classical causal picture of quantum correlations thus requires an even more radical modification of our classical notion of cause and effect. PMID:27532045
Causal evolution of wave packets
Eckstein, Michał
2016-01-01
Drawing from the optimal transport theory adapted to the relativistic setting we formulate the principle of a causal flow of probability and apply it in the wave packet formalism. We demonstrate that whereas the Dirac system is causal, the relativistic-Schr\\"odinger Hamiltonian impels a superluminal evolution of probabilities. We quantify the causality breakdown in the latter system and argue that, in contrast to the popular viewpoint, it is not related to the localisation properties of the states.
Granger causality for circular variables
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Angelini, Leonardo; Pellicoro, Mario [Istituto Nazionale di Fisica Nucleare, Sezione di Bari (Italy); Dipartimento di Fisica, University of Bari (Italy); Stramaglia, Sebastiano, E-mail: sebastiano.stramaglia@ba.infn.i [Istituto Nazionale di Fisica Nucleare, Sezione di Bari (Italy); Dipartimento di Fisica, University of Bari (Italy)
2009-06-29
In this Letter we discuss the use of Granger causality to the analyze systems of coupled circular variables, by modifying a recently proposed method for multivariate analysis of causality. We show the application of the proposed approach on several Kuramoto systems, in particular one living on networks built by preferential attachment and a model for the transition from deeply to lightly anaesthetized states. Granger causalities describe the flow of information among variables.
Causality Statistical Perspectives and Applications
Berzuini, Carlo; Bernardinell, Luisa
2012-01-01
A state of the art volume on statistical causality Causality: Statistical Perspectives and Applications presents a wide-ranging collection of seminal contributions by renowned experts in the field, providing a thorough treatment of all aspects of statistical causality. It covers the various formalisms in current use, methods for applying them to specific problems, and the special requirements of a range of examples from medicine, biology and economics to political science. This book:Provides a clear account and comparison of formal languages, concepts and models for statistical causality. Addr
Structural Equations and Causal Explanations: Some Challenges for Causal SEM
Markus, Keith A.
2010-01-01
One common application of structural equation modeling (SEM) involves expressing and empirically investigating causal explanations. Nonetheless, several aspects of causal explanation that have an impact on behavioral science methodology remain poorly understood. It remains unclear whether applications of SEM should attempt to provide complete…
The Cradle of Causal Reasoning: Newborns' Preference for Physical Causality
Mascalzoni, Elena; Regolin, Lucia; Vallortigara, Giorgio; Simion, Francesca
2013-01-01
Perception of mechanical (i.e. physical) causality, in terms of a cause-effect relationship between two motion events, appears to be a powerful mechanism in our daily experience. In spite of a growing interest in the earliest causal representations, the role of experience in the origin of this sensitivity is still a matter of dispute. Here, we…
The Cradle of Causal Reasoning: Newborns' Preference for Physical Causality
Mascalzoni, Elena; Regolin, Lucia; Vallortigara, Giorgio; Simion, Francesca
2013-01-01
Perception of mechanical (i.e. physical) causality, in terms of a cause-effect relationship between two motion events, appears to be a powerful mechanism in our daily experience. In spite of a growing interest in the earliest causal representations, the role of experience in the origin of this sensitivity is still a matter of dispute. Here, we…
Causal Analysis for Performance Modeling of Computer Programs
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Jan Lemeire
2007-01-01
Full Text Available Causal modeling and the accompanying learning algorithms provide useful extensions for in-depth statistical investigation and automation of performance modeling. We enlarged the scope of existing causal structure learning algorithms by using the form-free information-theoretic concept of mutual information and by introducing the complexity criterion for selecting direct relations among equivalent relations. The underlying probability distribution of experimental data is estimated by kernel density estimation. We then reported on the benefits of a dependency analysis and the decompositional capacities of causal models. Useful qualitative models, providing insight into the role of every performance factor, were inferred from experimental data. This paper reports on the results for a LU decomposition algorithm and on the study of the parameter sensitivity of the Kakadu implementation of the JPEG-2000 standard. Next, the analysis was used to search for generic performance characteristics of the applications.
Multisensory oddity detection as bayesian inference.
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Timothy Hospedales
Full Text Available A key goal for the perceptual system is to optimally combine information from all the senses that may be available in order to develop the most accurate and unified picture possible of the outside world. The contemporary theoretical framework of ideal observer maximum likelihood integration (MLI has been highly successful in modelling how the human brain combines information from a variety of different sensory modalities. However, in various recent experiments involving multisensory stimuli of uncertain correspondence, MLI breaks down as a successful model of sensory combination. Within the paradigm of direct stimulus estimation, perceptual models which use Bayesian inference to resolve correspondence have recently been shown to generalize successfully to these cases where MLI fails. This approach has been known variously as model inference, causal inference or structure inference. In this paper, we examine causal uncertainty in another important class of multi-sensory perception paradigm--that of oddity detection and demonstrate how a Bayesian ideal observer also treats oddity detection as a structure inference problem. We validate this approach by showing that it provides an intuitive and quantitative explanation of an important pair of multi-sensory oddity detection experiments--involving cues across and within modalities--for which MLI previously failed dramatically, allowing a novel unifying treatment of within and cross modal multisensory perception. Our successful application of structure inference models to the new 'oddity detection' paradigm, and the resultant unified explanation of across and within modality cases provide further evidence to suggest that structure inference may be a commonly evolved principle for combining perceptual information in the brain.
Multisensory oddity detection as bayesian inference.
Hospedales, Timothy; Vijayakumar, Sethu
2009-01-01
A key goal for the perceptual system is to optimally combine information from all the senses that may be available in order to develop the most accurate and unified picture possible of the outside world. The contemporary theoretical framework of ideal observer maximum likelihood integration (MLI) has been highly successful in modelling how the human brain combines information from a variety of different sensory modalities. However, in various recent experiments involving multisensory stimuli of uncertain correspondence, MLI breaks down as a successful model of sensory combination. Within the paradigm of direct stimulus estimation, perceptual models which use Bayesian inference to resolve correspondence have recently been shown to generalize successfully to these cases where MLI fails. This approach has been known variously as model inference, causal inference or structure inference. In this paper, we examine causal uncertainty in another important class of multi-sensory perception paradigm--that of oddity detection and demonstrate how a Bayesian ideal observer also treats oddity detection as a structure inference problem. We validate this approach by showing that it provides an intuitive and quantitative explanation of an important pair of multi-sensory oddity detection experiments--involving cues across and within modalities--for which MLI previously failed dramatically, allowing a novel unifying treatment of within and cross modal multisensory perception. Our successful application of structure inference models to the new 'oddity detection' paradigm, and the resultant unified explanation of across and within modality cases provide further evidence to suggest that structure inference may be a commonly evolved principle for combining perceptual information in the brain.
What can causal networks tell us about metabolic pathways?
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Rachael Hageman Blair
Full Text Available Graphical models describe the linear correlation structure of data and have been used to establish causal relationships among phenotypes in genetic mapping populations. Data are typically collected at a single point in time. Biological processes on the other hand are often non-linear and display time varying dynamics. The extent to which graphical models can recapitulate the architecture of an underlying biological processes is not well understood. We consider metabolic networks with known stoichiometry to address the fundamental question: "What can causal networks tell us about metabolic pathways?". Using data from an Arabidopsis Bay[Formula: see text]Sha population and simulated data from dynamic models of pathway motifs, we assess our ability to reconstruct metabolic pathways using graphical models. Our results highlight the necessity of non-genetic residual biological variation for reliable inference. Recovery of the ordering within a pathway is possible, but should not be expected. Causal inference is sensitive to subtle patterns in the correlation structure that may be driven by a variety of factors, which may not emphasize the substrate-product relationship. We illustrate the effects of metabolic pathway architecture, epistasis and stochastic variation on correlation structure and graphical model-derived networks. We conclude that graphical models should be interpreted cautiously, especially if the implied causal relationships are to be used in the design of intervention strategies.
New Caledonian crows reason about hidden causal agents.
Taylor, Alex H; Miller, Rachael; Gray, Russell D
2012-10-02
The ability to make inferences about hidden causal mechanisms underpins scientific and religious thought. It also facilitates the understanding of social interactions and the production of sophisticated tool-using behaviors. However, although animals can reason about the outcomes of accidental interventions, only humans have been shown to make inferences about hidden causal mechanisms. Here, we show that tool-making New Caledonian crows react differently to an observable event when it is caused by a hidden causal agent. Eight crows watched two series of events in which a stick moved. In the first set of events, the crows observed a human enter a hide, a stick move, and the human then leave the hide. In the second, the stick moved without a human entering or exiting the hide. The crows inspected the hide and abandoned probing with a tool for food more often after the second, unexplained series of events. This difference shows that the crows can reason about a hidden causal agent. Comparative studies with the methodology outlined here could aid in elucidating the selective pressures that led to the evolution of this cognitive ability.
Buehner, Marc J; May, Jon
2003-07-01
Time plays a pivotal role in causal inference. Nonetheless most contemporary theories of causal induction do not address the implications of temporal contiguity and delay, with the exception of associative learning theory. Shanks, Pearson, and Dickinson (1989) and several replications (Reed, 1992, 1999) have demonstrated that people fail to identify causal relations if cause and effect are separated by more than two seconds. In line with an associationist perspective, these findings have been interpreted to indicate that temporal lags universally impair causal induction. This interpretation clashes with the richness of everyday causal cognition where people apparently can reason about causal relations involving considerable delays. We look at the implications of cause-effect delays from a computational perspective and predict that delays should generally hinder reasoning performance, but that this hindrance should be alleviated if reasoners have knowledge of the delay. Two experiments demonstrated that (1) the impact of delay on causal judgement depends on participants' expectations about the timeframe of the causal relation, and (2) the free-operant procedures used in previous studies are ill-suited to study the direct influences of delay on causal induction, because they confound delay with weaker evidence for the relation in question. Implications for contemporary causal learning theories are discussed.
Friederich, Simon
2015-01-01
There is widespread belief in a tension between quantum theory and special relativity, motivated by the idea that quantum theory violates J. S. Bell's criterion of local causality, which is meant to implement the causal structure of relativistic space-time. This paper argues that if one takes the es
Expert Causal Reasoning and Explanation.
Kuipers, Benjamin
The relationship between cognitive psychologists and researchers in artificial intelligence carries substantial benefits for both. An ongoing investigation in causal reasoning in medical problem solving systems illustrates this interaction. This paper traces a dialectic of sorts in which three different types of causal resaoning for medical…
Introduction to causal dynamical triangulations
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Görlich, Andrzej
2013-01-01
The method of causal dynamical triangulations is a non-perturbative and background-independent approach to quantum theory of gravity. In this review we present recent results obtained within the four dimensional model of causal dynamical triangulations. We describe the phase structure of the mode...
Causal Attributions of Shy Subjects.
Teglasi, Hedwig; Hoffman, Mary Ann
1982-01-01
Causal attributions of shy students (N=36) were compared with those of a comparison group of students (N=36) in ten situations. Significant differences between the two groups emerged when explaining outcomes of situations considered to be problematic for shy individuals. Causal attributions may reflect realistic and situation-specific…
Friederich, Simon
2015-01-01
There is widespread belief in a tension between quantum theory and special relativity, motivated by the idea that quantum theory violates J. S. Bell's criterion of local causality, which is meant to implement the causal structure of relativistic space-time. This paper argues that if one takes the es
On causality of extreme events
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Massimiliano Zanin
2016-06-01
Full Text Available Multiple metrics have been developed to detect causality relations between data describing the elements constituting complex systems, all of them considering their evolution through time. Here we propose a metric able to detect causality within static data sets, by analysing how extreme events in one element correspond to the appearance of extreme events in a second one. The metric is able to detect non-linear causalities; to analyse both cross-sectional and longitudinal data sets; and to discriminate between real causalities and correlations caused by confounding factors. We validate the metric through synthetic data, dynamical and chaotic systems, and data representing the human brain activity in a cognitive task. We further show how the proposed metric is able to outperform classical causality metrics, provided non-linear relationships are present and large enough data sets are available.
On causality of extreme events
2016-01-01
Multiple metrics have been developed to detect causality relations between data describing the elements constituting complex systems, all of them considering their evolution through time. Here we propose a metric able to detect causality within static data sets, by analysing how extreme events in one element correspond to the appearance of extreme events in a second one. The metric is able to detect non-linear causalities; to analyse both cross-sectional and longitudinal data sets; and to discriminate between real causalities and correlations caused by confounding factors. We validate the metric through synthetic data, dynamical and chaotic systems, and data representing the human brain activity in a cognitive task. We further show how the proposed metric is able to outperform classical causality metrics, provided non-linear relationships are present and large enough data sets are available. PMID:27330866
CausalTrail: Testing hypothesis using causal Bayesian networks.
Stöckel, Daniel; Schmidt, Florian; Trampert, Patrick; Lenhof, Hans-Peter
2015-01-01
Summary Causal Bayesian Networks are a special class of Bayesian networks in which the hierarchy directly encodes the causal relationships between the variables. This allows to compute the effect of interventions, which are external changes to the system, caused by e.g. gene knockouts or an administered drug. Whereas numerous packages for constructing causal Bayesian networks are available, hardly any program targeted at downstream analysis exists. In this paper we present CausalTrail, a tool for performing reasoning on causal Bayesian networks using the do-calculus. CausalTrail's features include multiple data import methods, a flexible query language for formulating hypotheses, as well as an intuitive graphical user interface. The program is able to account for missing data and thus can be readily applied in multi-omics settings where it is common that not all measurements are performed for all samples. Availability and Implementation CausalTrail is implemented in C++ using the Boost and Qt5 libraries. It can be obtained from https://github.com/dstoeckel/causaltrail.
On the notion of causality in medicine: addressing Austin Bradford Hill and John L. Mackie
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Luís Fernando S. C. de Araújo
2014-03-01
Full Text Available Almost 50 years ago appeared the seminal article by Austin Bradford Hill where he presented parameters for inferring causes from statistical associations, which became known as Hill’s causal criteria. This was a milestone for the renewal of the idea of cause in medicine. Our article revisits his contribution in light of the ideas from the Australian philosopher John L. Mackie, whose important works on causality reached an audience distinct from Hill’s. We suggest that both the British epidemiologist and the Australian philosopher share the purpose of articulating probabilistic determinism and multi-causality, the first with a predominantly probabilistic model and the second with an analytical approach. This article explores the possible consequences of addressing these authors jointly in regard to causal inferences in medicine, especially in respect to mental disorders.
Causal Loop Analysis of coastal geomorphological systems
Payo, Andres; Hall, Jim W.; French, Jon; Sutherland, James; van Maanen, Barend; Nicholls, Robert J.; Reeve, Dominic E.
2016-03-01
As geomorphologists embrace ever more sophisticated theoretical frameworks that shift from simple notions of evolution towards single steady equilibria to recognise the possibility of multiple response pathways and outcomes, morphodynamic modellers are facing the problem of how to keep track of an ever-greater number of system feedbacks. Within coastal geomorphology, capturing these feedbacks is critically important, especially as the focus of activity shifts from reductionist models founded on sediment transport fundamentals to more synthesist ones intended to resolve emergent behaviours at decadal to centennial scales. This paper addresses the challenge of mapping the feedback structure of processes controlling geomorphic system behaviour with reference to illustrative applications of Causal Loop Analysis at two study cases: (1) the erosion-accretion behaviour of graded (mixed) sediment beds, and (2) the local alongshore sediment fluxes of sand-rich shorelines. These case study examples are chosen on account of their central role in the quantitative modelling of geomorphological futures and as they illustrate different types of causation. Causal loop diagrams, a form of directed graph, are used to distil the feedback structure to reveal, in advance of more quantitative modelling, multi-response pathways and multiple outcomes. In the case of graded sediment bed, up to three different outcomes (no response, and two disequilibrium states) can be derived from a simple qualitative stability analysis. For the sand-rich local shoreline behaviour case, two fundamentally different responses of the shoreline (diffusive and anti-diffusive), triggered by small changes of the shoreline cross-shore position, can be inferred purely through analysis of the causal pathways. Explicit depiction of feedback-structure diagrams is beneficial when developing numerical models to explore coastal morphological futures. By explicitly mapping the feedbacks included and neglected within a
Energy Technology Data Exchange (ETDEWEB)
Steinberg, Aephraim M. [Institute for Experimental Physics, University of Vienna, Vienna (Austria)
2003-12-01
Experiment confirms that information cannot be transmitted faster than the speed of light. Ever since Einstein stated that nothing can travel faster than light, physicists have delighted in finding exceptions. One after another, observations of such 'superluminal' propagation have been made. However, while some image or pattern- such as the motion of a spotlight projected on a distant wall - might have appeared to travel faster than light, it seemed that there was no way to use the superluminal effect to transmit energy or information. In recent years, the superluminal propagation of light pulses through certain media has led to renewed controversy. In 1995, for example, Guenther Nimtz of the University of Cologne encoded Mozart's 40th Symphony on a microwave beam, which he claimed to have transmitted at a speed faster than light. Others maintain that such a violation of Einstein's speed limit would wreak havoc on our most fundamental ideas about causality, allowing an effect to precede its cause. Relativity teaches us that sending a signal faster than light would be equivalent to sending it backwards in time. (U.K.)
History, causality, and sexology.
Money, John
2003-08-01
In 1896, Krafft-Ebing published Psychopathia Sexualis. Popularly defined as hereditary weakness or taintedness in the family pedigree, degeneracy was called upon as a causal explanation for perversions of the sexual instinct. Although Krafft-Ebing accepted Karl Ulrichs proposal that homosexuality could be innate and probably located in the brain, he paid little attention to neuropathological sexology. Alfred Binet challenged Krafft-Ebing's orthodoxy by explaining fetishism in terms of associative learning, to which Krafft-Ebing's response was that only those with a hereditary taint would be vulnerable. Thus did the venerable nature-nurture antithesis maintain its rhetoric, even to the present day. Krafft-Ebing died too soon to meet the Freudian challenge of endopsychic determinism, and too soon also to encounter the idea of a developmental multivariate outcome of what I have termed the lovemap. Like other brain maps, for example the languagemap, the lovemap requires an intact human brain in which to develop. The personalized content of the lovemap has access to the brain by way of the special senses.
Extraction of Textual Causal Relationships based on Natural Language Processing
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Sepideh Jamshidi-Nejad
2015-11-01
Full Text Available Natural language processing is a highly important subcategory in the wide area of artificial intelligence. Employing appropriate computational algorithms on sophisticated linguistic operations is the aim of natural language processing to extract and create computational theories from languages. In order to achieve this goal, the knowledge of linguists is needed in addition to computer science. In the field of linguistics, the syntactic and semantic relation of words and phrases and the extraction of causation is very significant which the latter is an information retrieval challenge. Recently, there is an increased attention towards the automatic extraction of causation from textual data sets. Although, previous research extracted the casual relations from uninterrupted data sets by using knowledge-based inference technologies and manual coding. Recently, finding comprehensive approaches for detection and extractions of causal arguments is a research area in the field of natural language processing.In this paper, a three-stepped approach is established through which, the position of words with syntax trees is obtained by extracting causation from causal and non-causal sentences of Web text. The arguments of events were extracted according to the dependency tree of phrases implemented by Python packages. Then potential causal relations were extracted by the extraction of specific nodes of the tree. In the final step, a statistical model is introduced for measuring the potential causal relations. Experimental results and evaluations with Recall, Precision and F-measure metrics show the accuracy and efficiency of the suggested model.
Identifying expectations about the strength of causal relationships.
Yeung, Saiwing; Griffiths, Thomas L
2015-02-01
When we try to identify causal relationships, how strong do we expect that relationship to be? Bayesian models of causal induction rely on assumptions regarding people's a priori beliefs about causal systems, with recent research focusing on people's expectations about the strength of causes. These expectations are expressed in terms of prior probability distributions. While proposals about the form of such prior distributions have been made previously, many different distributions are possible, making it difficult to test such proposals exhaustively. In Experiment 1 we used iterated learning-a method in which participants make inferences about data generated based on their own responses in previous trials-to estimate participants' prior beliefs about the strengths of causes. This method produced estimated prior distributions that were quite different from those previously proposed in the literature. Experiment 2 collected a large set of human judgments on the strength of causal relationships to be used as a benchmark for evaluating different models, using stimuli that cover a wider and more systematic set of contingencies than previous research. Using these judgments, we evaluated the predictions of various Bayesian models. The Bayesian model with priors estimated via iterated learning compared favorably against the others. Experiment 3 estimated participants' prior beliefs concerning different causal systems, revealing key similarities in their expectations across diverse scenarios.
Causal Selection and Counterfactual Reasoning
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William Jiménez-Leal
2013-01-01
Full Text Available El trabajo defiende la posición según la cual el pensamiento contrafactual depende de nuestra representación causal del mundo y, en este sentido, argumenta que existe una estrecha relación entre el razonamiento causal y el contrafactual. Se lleva a cabo una crítica a la teoría de la disociación de juicios de Mandel (Mandel, 2003b, que defiende la independencia funcional entre el proceso de selección causal y el razonamiento contrafactual en el contexto de la selección causal. En los experimentos realizados se manipularon algunos elementos de la semántica de la tarea con el fin de ilustrar aquellos casos en los que no se da la disociación entre el razonamiento causal y el contrafactual. En el Experimento 1, el nivel de descripción del evento objetivo se manipuló en una tarea de generación de listas y evaluación. El Experimento 2 replicó los hallazgos del Experimento 1 utilizando un sistema de codificación alternativo, mientras que el Experimento 3 realizó lo mismo utilizando un formato de respuesta alternativo. Los resultados de los experimentos apoyan la concepción del entendimiento causal propuesta por los modelos mentales causales.
Discrete causal theory emergent spacetime and the causal metric hypothesis
Dribus, Benjamin F
2017-01-01
This book evaluates and suggests potentially critical improvements to causal set theory, one of the best-motivated approaches to the outstanding problems of fundamental physics. Spacetime structure is of central importance to physics beyond general relativity and the standard model. The causal metric hypothesis treats causal relations as the basis of this structure. The book develops the consequences of this hypothesis under the assumption of a fundamental scale, with smooth spacetime geometry viewed as emergent. This approach resembles causal set theory, but differs in important ways; for example, the relative viewpoint, emphasizing relations between pairs of events, and relationships between pairs of histories, is central. The book culminates in a dynamical law for quantum spacetime, derived via generalized path summation.
Moscoso del Prado Martín, Fermín
2011-07-01
The finding of fractal scaling (FS) in behavioral sequences has raised a debate on whether FS is a pervasive property of the cognitive system or is the result of specific processes. Inferences about the origins of properties in time sequences are causal. That is, as opposed to correlational inferences reflecting instantaneous symmetrical relations, causal inferences concern asymmetric relations lagged in time. Here, I integrate Granger-causality with inferences about FS. Four simulations illustrate that causal analyses can isolate distinct FS sources, whereas correlational techniques cannot. I then analyze three simultaneous sequences of responses from a database of word-naming trials. I find that two, or perhaps three, distinct sources account for the presence of FS in these sequences, but FS is not a general property of the system. This suggests that FS arises due to the properties of a limited number of identifiable psychological and/or neural processes. Finally, I reanalyze a previously published dataset of acoustic frequency spectra using the new tools. The causality/criticality combination introduced here offers a new important perspective in the study of cognition. Copyright © 2011 Cognitive Science Society, Inc.
Design Issues and Inference in Experimental L2 Research
Hudson, Thom; Llosa, Lorena
2015-01-01
Explicit attention to research design issues is essential in experimental second language (L2) research. Too often, however, such careful attention is not paid. This article examines some of the issues surrounding experimental L2 research and its relationships to causal inferences. It discusses the place of research questions and hypotheses,…
Effects of Comprehension Skill on Inference Generation during Reading
Carlson, Sarah E.; van den Broek, Paul; McMaster, Kristen; Rapp, David N.; Bohn-Gettler, Catherine M.; Kendeou, Panayiota; White, Mary Jane
2014-01-01
The purpose of this study was to investigate differences between readers with different levels of comprehension skill when engaging in a causal questioning activity during reading, and the varied effects on inference generation. Fourth-grade readers (n?=?74) with different levels of comprehension skill read narrative texts aloud and were asked…
Design Issues and Inference in Experimental L2 Research
Hudson, Thom; Llosa, Lorena
2015-01-01
Explicit attention to research design issues is essential in experimental second language (L2) research. Too often, however, such careful attention is not paid. This article examines some of the issues surrounding experimental L2 research and its relationships to causal inferences. It discusses the place of research questions and hypotheses,…
Electricity consumption and economic growth: bounds and causality analyses of OPEC members
Energy Technology Data Exchange (ETDEWEB)
Jay Squalli [Zayed University, Dubai (United Arab Emirates). Economic and Policy Research Unit
2007-11-15
This paper investigates the relationship between electricity consumption and economic growth for OPEC members. The bounds test yields evidence of a long-run relationship between electricity consumption and economic growth for all OPEC members. Causality results suggest that economic growth is dependent on electricity consumption in five countries, less dependent in three countries, and independent in three countries. Because these countries do not necessarily share similar political and economic traits, no single universal policy implication can be inferred from the results. The disparities across these causality results, therefore, stress the importance of formulating causality explanations while taking into account the particularities of individual countries rather than blindly applying the conventional interpretations. (author)
A Bayesian approach to estimating causal vaccine effects on binary post-infection outcomes.
Zhou, Jincheng; Chu, Haitao; Hudgens, Michael G; Halloran, M Elizabeth
2016-01-15
To estimate causal effects of vaccine on post-infection outcomes, Hudgens and Halloran (2006) defined a post-infection causal vaccine efficacy estimand VEI based on the principal stratification framework. They also derived closed forms for the maximum likelihood estimators of the causal estimand under some assumptions. Extending their research, we propose a Bayesian approach to estimating the causal vaccine effects on binary post-infection outcomes. The identifiability of the causal vaccine effect VEI is discussed under different assumptions on selection bias. The performance of the proposed Bayesian method is compared with the maximum likelihood method through simulation studies and two case studies - a clinical trial of a rotavirus vaccine candidate and a field study of pertussis vaccination. For both case studies, the Bayesian approach provided similar inference as the frequentist analysis. However, simulation studies with small sample sizes suggest that the Bayesian approach provides smaller bias and shorter confidence interval length.
On causality of extreme events
Zanin, Massimiliano
2016-01-01
Multiple metrics have been developed to detect causality relations between data describing the elements constituting complex systems, all of them considering their evolution through time. Here we propose a metric able to detect causality within static data sets, by analysing how extreme events in one element correspond to the appearance of extreme events in a second one. The metric is able to detect both linear and non-linear causalities; to analyse both cross-sectional and longitudinal data sets; and to discriminate between real causalities and correlations caused by confounding factors. We validate the metric through synthetic data, dynamical and chaotic systems, and data representing the human brain activity in a cognitive task.
Causal categories: relativistically interacting processes
Coecke, Bob
2011-01-01
A symmetric monoidal category naturally arises as the mathematical structure that organizes physical systems, processes, and composition thereof, both sequentially and in parallel. This structure admits a purely graphical calculus. This paper is concerned with the encoding of a fixed causal structure within a symmetric monoidal category: causal dependencies will correspond to topological connectedness in the graphical language. We show that correlations, either classical or quantum, force terminality of the tensor unit. We also show that well-definedness of the concept of a global state forces the monoidal product to be only partially defined, which in turn results in a relativistic covariance theorem. Except for these assumptions, at no stage do we assume anything more than purely compositional symmetric-monoidal categorical structure. We cast these two structural results in terms of a mathematical entity, which we call a `causal category'. We provide methods of constructing causal categories, and we study t...
Fluctuations in Relativistic Causal Hydrodynamics
Kumar, Avdhesh; Mishra, Ananta P
2013-01-01
The formalism to calculate the hydrodynamics fluctuation using the quasi-stationary fluctuation theory of Onsager to the relativistic Navier-Stokes hydrodynamics is already known. In this work we calculate hydrodynamic fluctuations in relativistic causal theory of Muller, Israel and Stewart and other related causal hydrodynamic theories. We show that expressions for the Onsager coefficients and the correlation functions have form similar to the ones obtained by using Navier-Stokes equation. However, temporal evolution of the correlation functions obtained using MIS and the other causal theories can be significantly different than the correlation functions obtained using the Navier-Stokes equation. Finally, as an illustrative example, we explicitly plot the correlation functions obtained using the causal-hydrodynamics theories and compare them with correlation functions obtained by earlier authors using the expanding boost-invariant (Bjorken) flows.
Boundary Terms for Causal Sets
Buck, Michel; Jubb, Ian; Surya, Sumati
2015-01-01
We propose a family of boundary terms for the action of a causal set with a spacelike boundary. We show that in the continuum limit one recovers the Gibbons-Hawking-York boundary term in the mean. We also calculate the continuum limit of the mean causal set action for an Alexandrov interval in flat spacetime. We find that it is equal to the volume of the codimension-2 intersection of the two light-cone boundaries of the interval.
Causality constraints on TMD PDF
Efremov, A V
2013-01-01
In this short note, we discuss constraints on the transverse momentum dependent factorization formulae coming from the causality properties for the hadronic tensor. We show that the range of definition of the TMD PDFs in the transverse coordinate plane is wider that it is allowed by the causality. It indicates the presents of the large compensating corrections for the TMD PDF factorization theorem and/or overestimation of the transverse component dependence of TMD PDF.
The power of possibility: causal learning, counterfactual reasoning, and pretend play.
Buchsbaum, Daphna; Bridgers, Sophie; Skolnick Weisberg, Deena; Gopnik, Alison
2012-08-01
We argue for a theoretical link between the development of an extended period of immaturity in human evolution and the emergence of powerful and wide-ranging causal learning mechanisms, specifically the use of causal models and Bayesian learning. We suggest that exploratory childhood learning, childhood play in particular, and causal cognition are closely connected. We report an empirical study demonstrating one such connection--a link between pretend play and counterfactual causal reasoning. Preschool children given new information about a causal system made very similar inferences both when they considered counterfactuals about the system and when they engaged in pretend play about it. Counterfactual cognition and causally coherent pretence were also significantly correlated even when age, general cognitive development and executive function were controlled for. These findings link a distinctive human form of childhood play and an equally distinctive human form of causal inference. We speculate that, during human evolution, computations that were initially reserved for solving particularly important ecological problems came to be used much more widely and extensively during the long period of protected immaturity.
The role of learning data in causal reasoning about observations and interventions.
Meder, Björn; Hagmayer, York; Waldmann, Michael R
2009-04-01
Recent studies have shown that people have the capacity to derive interventional predictions for previously unseen actions from observational knowledge, a finding that challenges associative theories of causal learning and reasoning (e.g., Meder, Hagmayer, & Waldmann, 2008). Although some researchers have claimed that such inferences are based mainly on qualitative reasoning about the structure of a causal system (e.g., Sloman, 2005), we propose that people use both the causal structure and its parameters for their inferences. We here employ an observational trial-by-trial learning paradigm to test this prediction. In Experiment 1, the causal strength of the links within a given causal model was varied, whereas in Experiment 2, base rate information was manipulated while keeping the structure of the model constant. The results show that learners' causal judgments were strongly affected by the observed learning data despite being presented with identical hypotheses about causal structure. The findings show furthermore that participants correctly distinguished between observations and hypothetical interventions. However, they did not adequately differentiate between hypothetical and counterfactual interventions.
Correlation Measure Equivalence in Dynamic Causal Structures
Gyongyosi, Laszlo
2016-01-01
We prove an equivalence transformation between the correlation measure functions of the causally-unbiased quantum gravity space and the causally-biased standard space. The theory of quantum gravity fuses the dynamic (nonfixed) causal structure of general relativity and the quantum uncertainty of quantum mechanics. In a quantum gravity space, the events are causally nonseparable and all time bias vanishes, which makes it no possible to use the standard causally-biased entropy and the correlation measure functions. Since a corrected causally-unbiased entropy function leads to an undefined, obscure mathematical structure, in our approach the correction is made in the data representation of the causally-unbiased space. We prove that the standard causally-biased entropy function with a data correction can be used to identify correlations in dynamic causal structures. As a corollary, all mathematical properties of the causally-biased correlation measure functions are preserved in the causally-unbiased space. The eq...
Causality in physiological signals.
Müller, Andreas; Kraemer, Jan F; Penzel, Thomas; Bonnemeier, Hendrik; Kurths, Jürgen; Wessel, Niels
2016-05-01
Health is one of the most important non-material assets and thus also has an enormous influence on material values, since treating and preventing diseases is expensive. The number one cause of death worldwide today originates in cardiovascular diseases. For these reasons the aim of understanding the functions and the interactions of the cardiovascular system is and has been a major research topic throughout various disciplines for more than a hundred years. The purpose of most of today's research is to get as much information as possible with the lowest possible effort and the least discomfort for the subject or patient, e.g. via non-invasive measurements. A family of tools whose importance has been growing during the last years is known under the headline of coupling measures. The rationale for this kind of analysis is to identify the structure of interactions in a system of multiple components. Important information lies for example in the coupling direction, the coupling strength, and occurring time lags. In this work, we will, after a brief general introduction covering the development of cardiovascular time series analysis, introduce, explain and review some of the most important coupling measures and classify them according to their origin and capabilities in the light of physiological analyses. We will begin with classical correlation measures, go via Granger-causality-based tools, entropy-based techniques (e.g. momentary information transfer), nonlinear prediction measures (e.g. mutual prediction) to symbolic dynamics (e.g. symbolic coupling traces). All these methods have contributed important insights into physiological interactions like cardiorespiratory coupling, neuro-cardio-coupling and many more. Furthermore, we will cover tools to detect and analyze synchronization and coordination (e.g. synchrogram and coordigram). As a last point we will address time dependent couplings as identified using a recent approach employing ensembles of time series. The
Causality and Tense - two temporal structure builders
Oversteegen, E.
2005-01-01
By force of causes precede effects, causality contributes to the temporal meaning of discourse. In case of semantic causal relations, this contribution is straightforward, but in case of epistemic causal relations, it is not. In order to gain insight into the semantics of epistemic causal relations,
An Algorithmic Information Calculus for Causal Discovery and Reprogramming Systems
Zenil, Hector
2017-09-08
We introduce a conceptual framework and an interventional calculus to steer and manipulate systems based on their intrinsic algorithmic probability using the universal principles of the theory of computability and algorithmic information. By applying sequences of controlled interventions to systems and networks, we estimate how changes in their algorithmic information content are reflected in positive/negative shifts towards and away from randomness. The strong connection between approximations to algorithmic complexity (the size of the shortest generating mechanism) and causality induces a sequence of perturbations ranking the network elements by the steering capabilities that each of them is capable of. This new dimension unmasks a separation between causal and non-causal components providing a suite of powerful parameter-free algorithms of wide applicability ranging from optimal dimension reduction, maximal randomness analysis and system control. We introduce methods for reprogramming systems that do not require the full knowledge or access to the system\\'s actual kinetic equations or any probability distributions. A causal interventional analysis of synthetic and regulatory biological networks reveals how the algorithmic reprogramming qualitatively reshapes the system\\'s dynamic landscape. For example, during cellular differentiation we find a decrease in the number of elements corresponding to a transition away from randomness and a combination of the system\\'s intrinsic properties and its intrinsic capabilities to be algorithmically reprogrammed can reconstruct an epigenetic landscape. The interventional calculus is broadly applicable to predictive causal inference of systems such as networks and of relevance to a variety of machine and causal learning techniques driving model-based approaches to better understanding and manipulate complex systems.
Timing and causality in the generation of learned eyelid responses
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Raudel eSánchez-Campusano
2011-08-01
Full Text Available The cerebellum-red nucleus-facial motoneuron (Mn pathway has been reported as being involved in the proper timing of classically conditioned eyelid responses. This special type of associative learning serves as a model of event timing for studying the role of the cerebellum in dynamic motor control. Here, we have re-analyzed the firing activities of cerebellar posterior interpositus (IP neurons and orbicularis oculi (OO Mns in alert behaving cats during classical eyeblink conditioning, using a delay paradigm. The aim was to revisit the hypothesis that the IP neurons can be considered a neuronal phase-modulating device supporting OO Mns firing with an emergent timing mechanism and an explicit correlation code during learned eyelid movements. Optimized experimental and computational tools allowed us to determine the different causal relationships (temporal order and correlation code during and between trials. These intra- and inter-trial timing strategies expanding from sub-second range (millisecond timing to longer-lasting ranges (interval timing expanded the functional domain of cerebellar timing beyond motor control. Interestingly, the results supported the above-mentioned hypothesis. The causal inferences were influenced by the precise motor and premotor spike-timing in the cause-effect interval, and, in addition, the timing of the learned responses depended on cerebellar-Mn network causality. Furthermore, the timing of CRs depended upon the probability of simulated causal conditions in the cause-effect interval and not the mere duration of the inter-stimulus interval. In this work, the close relation between timing and causality was verified. It could thus be concluded that the firing activities of IP neurons may be related more to the proper performance of ongoing CRs (i.e., the proper timing as a consequence of the pertinent causality than to their generation and/or initiation.
Causal Stability Conditions for General Relativistic Spacetimes
Howard, E M
2016-01-01
A brief overview of some open questions in general relativity with important consequences for causality theory is presented, aiming to a better understanding of the causal structure of the spacetime. Special attention is accorded to the problem of fundamental causal stability conditions. Several questions are raised and some of the potential consequences of recent results regarding the causality problem in general relativity are presented. A key question is whether causality violating regions are locally allowed. The new concept of almost stable causality is introduced; meanwhile, related conditions and criteria for the stability and almost stability of the causal structure are discussed.
Human causal discovery from observational data.
1996-01-01
Utilizing Bayesian belief networks as a model of causality, we examined medical students' ability to discover causal relationships from observational data. Nine sets of patient cases were generated from relatively simple causal belief networks by stochastic simulation. Twenty participants examined the data sets and attempted to discover the underlying causal relationships. Performance was poor in general, except at discovering the absence of a causal relationship. This work supports the poten...
The Geometry of Small Causal Cones
Jubb, Ian
2016-01-01
We derive a formula for the spacetime volume of a small causal cone. We use this formula within the context of causal set theory to construct causal set expressions for certain geometric quantities relating to a spacetime with a spacelike hypersurface. We also consider a scalar field on the causal set, and obtain causal set expressions relating to its normal derivatives with respect to the hypersurface.
The Relation between Granger Causality and Directed Information Theory: A Review
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Pierre-Olivier Amblard
2012-12-01
Full Text Available This report reviews the conceptual and theoretical links between Granger causality and directed information theory. We begin with a short historical tour of Granger causality, concentrating on its closeness to information theory. The definitions of Granger causality based on prediction are recalled, and the importance of the observation set is discussed. We present the definitions based on conditional independence. The notion of instantaneous coupling is included in the definitions. The concept of Granger causality graphs is discussed. We present directed information theory from the perspective of studies of causal influences between stochastic processes. Causal conditioning appears to be the cornerstone for the relation between information theory and Granger causality. In the bivariate case, the fundamental measure is the directed information, which decomposes as the sum of the transfer entropies and a term quantifying instantaneous coupling. We show the decomposition of the mutual information into the sums of the transfer entropies and the instantaneous coupling measure, a relation known for the linear Gaussian case. We study the multivariate case, showing that the useful decomposition is blurred by instantaneous coupling. The links are further developed by studying how measures based on directed information theory naturally emerge from Granger causality inference frameworks as hypothesis testing.
Causality and Primordial Tensor Modes
Baumann, Daniel
2009-01-01
We introduce the real space correlation function of $B$-mode polarization of the cosmic microwave background (CMB) as a probe of superhorizon tensor perturbations created by inflation. By causality, any non-inflationary mechanism for gravitational wave production after reheating, like global phase transitions or cosmic strings, must have vanishing correlations for angular separations greater than the angle subtended by the particle horizon at recombination, i.e. $\\theta \\gtrsim 2^\\circ$. Since ordinary $B$-modes are defined non-locally in terms of the Stokes parameters $Q$ and $U$ and therefore don't have to respect causality, special care is taken to define `causal $\\tilde B$-modes' for the analysis. We compute the real space $\\tilde B$-mode correlation function for inflation and discuss its detectability on superhorizon scales where it provides an unambiguous test of inflationary gravitational waves. The correct identification of inflationary tensor modes is crucial since it relates directly to the energy s...
Relativistic causality and clockless circuits
Matherat, Philippe; 10.1145/2043643.2043650
2011-01-01
Time plays a crucial role in the performance of computing systems. The accurate modelling of logical devices, and of their physical implementations, requires an appropriate representation of time and of all properties that depend on this notion. The need for a proper model, particularly acute in the design of clockless delay-insensitive (DI) circuits, leads one to reconsider the classical descriptions of time and of the resulting order and causal relations satisfied by logical operations. This questioning meets the criticisms of classical spacetime formulated by Einstein when founding relativity theory and is answered by relativistic conceptions of time and causality. Applying this approach to clockless circuits and considering the trace formalism, we rewrite Udding's rules which characterize communications between DI components. We exhibit their intrinsic relation with relativistic causality. For that purpose, we introduce relativistic generalizations of traces, called R-traces, which provide a pertinent des...
Causal analysis of academic performance.
Rao, D C; Morton, N E; Elston, R C; Yee, S
1977-03-01
Maximum likelihood methods are presented to test for the relations between causes and effects in linear path diagrams, without assuming that estimates of causes are free of error. Causal analysis is illustrated by published data of the Equal Educational Opportunity Survey, which show that American schools do not significantly modify socioeconomic differences in academic performance and that little of the observed racial difference in academic performance is causal. For two races differing by 15 IQ points, the differential if social class were randomized would be only about 3 points. The principle is stressed that a racial effect in a causal system may be environmental and that its etiology can be studied only by analysis of family resemblance in hybrid populations.
Statistics, Causality and Bell's theorem
Gill, Richard D
2012-01-01
Bell's (1964) theorem is popularly supposed to establish the non-locality of quantum physics as a mathematical-physical theory. Building from this, observed violation of Bell's inequality in experiments such as that of Aspect and coworkers (1982) is popularly supposed to provide empirical proof of non-locality in the real world. This paper reviews recent work on Bell's theorem, linking it to issues in causality as understood by statisticians. The paper starts with a new proof of a strong (finite sample) version of Bell's theorem which relies only on elementary arithmetic and (counting) probability. This proof underscores the fact that Bell's theorem tells us that quantum theory is incompatible with the conjunction of three cherished and formerly uncontroversial physical principles, nicknamed here locality, realism, and freedom. The first, locality, is obviously connected to causality: causal influences need time to propagate spatially. Less obviously, the other two principles, realism and freedom, are also fo...
Gravitation, Causality, and Quantum Consistency
Hertzberg, Mark P
2016-01-01
We examine the role of consistency with causality and quantum mechanics in determining the properties of gravitation. We begin by constructing two different classes of interacting theories of massless spin 2 particles -- gravitons. One involves coupling the graviton with the lowest number of derivatives to matter, the other involves coupling the graviton with higher derivatives to matter, making use of the linearized Riemann tensor. The first class requires an infinite tower of terms for consistency, which is known to lead uniquely to general relativity. The second class only requires a finite number of terms for consistency, which appears as a new class of theories of massless spin 2. We recap the causal consistency of general relativity and show how this fails in the second class for the special case of coupling to photons, exploiting related calculations in the literature. In an upcoming publication [1] this result is generalized to a much broader set of theories. Then, as a causal modification of general ...
Causal Models for Risk Management
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Neysis Hernández Díaz
2013-12-01
Full Text Available In this work a study about the process of risk management in major schools in the world. The project management tools worldwide highlights the need to redefine risk management processes. From the information obtained it is proposed the use of causal models for risk analysis based on information from the project or company, say risks and the influence thereof on the costs, human capital and project requirements and detect the damages of a number of tasks without tribute to the development of the project. A study on the use of causal models as knowledge representation techniques causal, among which are the Fuzzy Cognitive Maps (DCM and Bayesian networks, with the most favorable MCD technique to use because it allows modeling the risk information witho ut having a knowledge base either itemize.
Causal analysis of time series from hydrological systems
Selle, Benny; Aufgebauer, Britta; Knorr, Klaus-Holger
2017-04-01
It is often difficult to infer cause and effect in hydrological systems for which time series of system inputs, outputs and state variables are observed. A recently published technique called Convergent Cross Mapping could be a promising tool to detect causality between time series. A response variable Y may be causally related to a forcing variable X, if the so called cross mapping of X using Y improves with the amount of data included. The idea is that a response variable contains information on the history of its driving variable whereas the reverse may not be true. We propose an alternative approach based on similar ideas using neural networks. Our approach is firstly compared to Convergent Cross Mapping using a synthetic time series of precipitation and streamflow generated by a rainfall runoff model. Secondly, measured concentrations of dissolved organic carbon and dissolved iron from a mountainous stream in Germany, that were previously hypothesised to be casually linked, are tested.
On Causality in Dynamical Systems
Harnack, Daniel
2016-01-01
Identification of causal links is fundamental for the analysis of complex systems. In dynamical systems, however, nonlinear interactions may hamper separability of subsystems which poses a challenge for attempts to determine the directions and strengths of their mutual influences. We found that asymmetric causal influences between parts of a dynamical system lead to characteristic distortions in the mappings between the attractor manifolds reconstructed from respective local observables. These distortions can be measured in a model-free, data-driven manner. This approach extends basic intuitions about cause-effect relations to deterministic dynamical systems and suggests a mathematically well defined explanation of results obtained from previous methods based on state space reconstruction.
Cohomology with causally restricted supports
Khavkine, Igor
2014-01-01
De Rham cohomology with spacelike compact and timelike compact supports has recently been noticed to be of importance for understanding the structure of classical and quantum field theories on curved spacetimes. We compute these cohomology groups for globally hyperbolic spacetimes in terms of their standard de Rham cohomologies. The calculation exploits the fact that the de Rham-d'Alambert wave operator can be extended to a chain map that is homotopic to zero and that its causal Green function fits into a convenient exact sequence. This method extends also to the Calabi (or Killing-Riemann-Bianchi) complex and possibly other differential complexes. We also discuss generalized causal structures and functoriality.
Kolmogorov Complexity, Causality And Spin
Shayda, Dara O
2012-01-01
A novel topological and computational method for 'motion' is described. Motion is constrained by inequalities in terms of Kolmogorov Complexity. Causality is obtained as the output of a high-pass filter, passing through only high values of Kolmogorov Complexity. Motion under the electromagnetic field described with immediate relationship with Subscript[G, 2] Holonomy group and its corresponding dense free 2-subgroup. Similar to Causality, Spin emerges as an immediate and inevitable consequence of high values of Kolmogorov Complexity. Consequently, the physical laws are nothing but a low-pass filter for small values of Kolmogorov Complexity.
Information thermodynamics on causal networks.
Ito, Sosuke; Sagawa, Takahiro
2013-11-01
We study nonequilibrium thermodynamics of complex information flows induced by interactions between multiple fluctuating systems. Characterizing nonequilibrium dynamics by causal networks (i.e., Bayesian networks), we obtain novel generalizations of the second law of thermodynamics and the fluctuation theorem, which include an informational quantity characterized by the topology of the causal network. Our result implies that the entropy production in a single system in the presence of multiple other systems is bounded by the information flow between these systems. We demonstrate our general result by a simple model of biochemical adaptation.
Local Causality, Probability and Explanation
Healey, Richard A
2016-01-01
In papers published in the 25 years following his famous 1964 proof John Bell refined and reformulated his views on locality and causality. Although his formulations of local causality were in terms of probability, he had little to say about that notion. But assumptions about probability are implicit in his arguments and conclusions. Probability does not conform to these assumptions when quantum mechanics is applied to account for the particular correlations Bell argues are locally inexplicable. This account involves no superluminal action and there is even a sense in which it is local, but it is in tension with the requirement that the direct causes and effects of events are nearby.
Causality and micro-causality in curved spacetime
Energy Technology Data Exchange (ETDEWEB)
Hollowood, Timothy J. [Department of Physics, University of Wales Swansea, Swansea, SA2 8PP (United Kingdom)], E-mail: t.hollowood@swansea.ac.uk; Shore, Graham M. [Department of Physics, University of Wales Swansea, Swansea, SA2 8PP (United Kingdom)], E-mail: g.m.shore@swansea.ac.uk
2007-10-25
We consider how causality and micro-causality are realised in QED in curved spacetime. The photon propagator is found to exhibit novel non-analytic behaviour due to vacuum polarization, which invalidates the Kramers-Kronig dispersion relation and calls into question the validity of micro-causality in curved spacetime. This non-analyticity is ultimately related to the generic focusing nature of congruences of geodesics in curved spacetime, as implied by the null energy condition, and the existence of conjugate points. These results arise from a calculation of the complete non-perturbative frequency dependence of the vacuum polarization tensor in QED, using novel world-line path integral methods together with the Penrose plane-wave limit of spacetime in the neighbourhood of a null geodesic. The refractive index of curved spacetime is shown to exhibit superluminal phase velocities, dispersion, absorption (due to {gamma}{yields}e{sup +}e{sup -}) and bi-refringence, but we demonstrate that the wavefront velocity (the high-frequency limit of the phase velocity) is indeed c, thereby guaranteeing that causality itself is respected.
Warranting the use of causal claims
Directory of Open Access Journals (Sweden)
Menno Rol
2012-06-01
Full Text Available To what use can causal claims established in good studies be put? We give examples of studies from which inaccurate inferences were made about target policy situations. The usual diagnosis is that the studies in question lack external validity, which means that the same results do not hold in the target as in study. That’s a label that just repeats what we already knew. We offer a deeper analysis. Our analysis points to the need for interdisciplinarity and to the demand to focus not on the study – as the expression ‘external validity’ invites you to do – but on the target.The call for interdisciplinary approaches to real life problems is common since it is widely acknowledged that what happens in the real world seldom falls under the auspices of any single research domain. Our focus is on one specific real life problem: how to use causal claims from good studies to help predict whether the policies tested will work in a new situation. Our analysis of what it takes to back up these predictions points up very specific stages in the process of prediction where we are bound to get it wrong if we do not diversify our concepts, our knowledge and our methods.We isolate two reasons inferences from study to target fail. First, policy variables do not produce results on their own; they need helping factors. The distribution of helping factors is likely to be unique or local for each study, so one cannot expect external validity to be all that common. Second, researchers often give too concrete a description of the cause in the study for it to carry over to the target. Abstraction is necessary to get causes that travel.There is no sure-fire way to guard against these problems. But the unavailability of one perfect tool does not imply there are no second best contrivances. Two general pointers for Good Practice in policy advice follow from our diagnosis: focus on the concrete details in the target and use cross discipline heuristics that
Warranting the use of causal claims: A non-trivial case for interdisciplinarity.
Rol, M.; Cartwright, N.
2012-01-01
To what use can causal claims established in good studies be put? We give examples of studies from which inaccurate inferences were made about target policy situations. The usual diagnosis is that the studies in question lack external validity, which means that the same results do not hold in the ta
Encouraging children to think counterfactually enhances blocking in a causal learning task
T. McCormack; V. Simms; J. McGourty; T. Beckers
2013-01-01
According to a higher order reasoning account, inferential reasoning processes underpin the widely observed cue competition effect of blocking in causal learning. The inference required for blocking has been described as modus tollens (if p then q, not q therefore not p). Young children are known to
Warranting the use of causal claims : A non-trivial case for interdisciplinarity
Rol, Menno; Cartwright, Nancy
2012-01-01
To what use can causal claims established in good policy studies be put? We isolate two reasons inferences from study to target fail. First, policy variables do not produce results on their own; they need helping factors. The distribution of helping factors is likely to be unique or local for each s
Zhou, Douglas; Zhang, Yaoyu; Xiao, Yanyang; Cai, David
2014-01-01
Granger causality (GC) is a powerful method for causal inference for time series. In general, the GC value is computed using discrete time series sampled from continuous-time processes with a certain sampling interval length τ, i.e., the GC value is a function of τ. Using the GC analysis for the topology extraction of the simplest integrate-and-fire neuronal network of two neurons, we discuss behaviors of the GC value as a function of τ, which exhibits (i) oscillations, often vanishing at certain finite sampling interval lengths, (ii) the GC vanishes linearly as one uses finer and finer sampling. We show that these sampling effects can occur in both linear and non-linear dynamics: the GC value may vanish in the presence of true causal influence or become non-zero in the absence of causal influence. Without properly taking this issue into account, GC analysis may produce unreliable conclusions about causal influence when applied to empirical data. These sampling artifacts on the GC value greatly complicate the reliability of causal inference using the GC analysis, in general, and the validity of topology reconstruction for networks, in particular. We use idealized linear models to illustrate possible mechanisms underlying these phenomena and to gain insight into the general spectral structures that give rise to these sampling effects. Finally, we present an approach to circumvent these sampling artifacts to obtain reliable GC values.
Directory of Open Access Journals (Sweden)
Douglas eZhou
2014-07-01
Full Text Available Granger causality (GC is a powerful method for causal inference for time series. In general, the GC value is computed using discrete time series sampled from continuous-time processes with a certain sampling interval length $tau$, emph{i.e.}, the GC value is a function of $tau$. Using the GC analysis for the topology extraction of the simplest integrate-and-fire neuronal network of two neurons, we discuss behaviors of the GC value as a function of $tau$, which exhibits (i oscillations, often vanishing at certain finite sampling interval lengths, (ii the GC vanishes linearly as one uses finer and finer sampling. We show that these sampling effects can occur in both linear and nonlinear dynamics: the GC value may vanish in the presence of true causal influence or become nonzero in the absence of causal influence. Without properly taking this issue into account, GC analysis may produce unreliable conclusions about causal influence when applied to empirical data. These sampling artifacts on the GC value greatly complicate the reliability of causal inference using the GC analysis, in general, and the validity of topology reconstruction for networks, in particular. We use idealized linear models to illustrate possible mechanisms underlying these phenomena and to gain insight into the general spectral structures that give rise to these sampling effects. Finally, we present an approach to circumvent these sampling artifacts to obtain reliable GC values.
DEFF Research Database (Denmark)
Andersen, Jesper
2009-01-01
Collateral evolution the problem of updating several library-using programs in response to API changes in the used library. In this dissertation we address the issue of understanding collateral evolutions by automatically inferring a high-level specification of the changes evident in a given set ...... specifications inferred by spdiff in Linux are shown. We find that the inferred specifications concisely capture the actual collateral evolution performed in the examples....
Causal Categories: Relativistically Interacting Processes
Coecke, Bob; Lal, Raymond
2013-04-01
A symmetric monoidal category naturally arises as the mathematical structure that organizes physical systems, processes, and composition thereof, both sequentially and in parallel. This structure admits a purely graphical calculus. This paper is concerned with the encoding of a fixed causal structure within a symmetric monoidal category: causal dependencies will correspond to topological connectedness in the graphical language. We show that correlations, either classical or quantum, force terminality of the tensor unit. We also show that well-definedness of the concept of a global state forces the monoidal product to be only partially defined, which in turn results in a relativistic covariance theorem. Except for these assumptions, at no stage do we assume anything more than purely compositional symmetric-monoidal categorical structure. We cast these two structural results in terms of a mathematical entity, which we call a causal category. We provide methods of constructing causal categories, and we study the consequences of these methods for the general framework of categorical quantum mechanics.
Causality problem in Economic Science
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JOSÉ LUIS RETOLAZA
2007-12-01
Full Text Available The main point of the paper is the problem of the economy to be consider like a science in the most strict term of the concept. In the first step we are going to tackle a presentation about what we understand by science to subsequently present some of the fallacies which have bring certain scepticism about the scientific character of the investigation in economy, to know: 1 The differences between hard and weak sciences -physics and social; 2 The differences between paradigm, —positivist and phenomenological— 3 The differences between physic causalityand historic causality. In the second step we are going to talk about two fundamental problems which are questioned: 1 the confusion between ontology and gnoseology and, 2 the erroneous concept of causality that commonly is used. In the last step of the paper we are going over the recent models of «causal explanation» and we suggest the probabilistic casualty development next with a more elaborated models of causal explanation, like a way to conjugate the scientific severity with the possibility to tackle complex economic realities.
Causal feedbacks in climate change
Nes, van E.H.; Scheffer, M.; Brovkin, V.; Lenton, T.M.; Ye, H.; Deyle, E.; Sugihara, G.
2015-01-01
The statistical association between temperature and greenhouse gases over glacial cycles is well documented1, but causality behind this correlation remains difficult to extract directly from the data. A time lag of CO2 behind Antarctic temperature—originally thought to hint at a driving role for tem
Causal Behaviour on Carter spacetime
Blanco, Oihane F
2015-01-01
In this work we will focus on the causal character of Carter Spacetime (see B. Carter, Causal structure in space-time, Gen. Rel. Grav. 1 4 337-406, 1971). The importance of this spacetime is the following: for the causally best well behaved spacetimes (the globally hyperbolic ones), there are several characterizations or alternative definitions. In some cases, it has been shown that some of the causal properties required in these characterizations can be weakened. But Carter spacetime provides a counterexample for an impossible relaxation in one of them. We studied the possibility of Carter spacetime to be a counterexample for impossible lessening in another characterization, based on the previous results. In particular, we will prove that the time-separation or Lorentzian distance between two chosen points in Carter spacetime is infinite. Although this spacetime turned out not to be the counterexample we were looking for, the found result is interesting per se and provides ideas for alternate approaches to t...
Breaking the arrows of causality
DEFF Research Database (Denmark)
Valsiner, Jaan
2014-01-01
Theoretical models of catalysis have proven to bring with them major breakthroughs in chemistry and biology, from the 1830s onward. It can be argued that the scientific status of chemistry has become established through the move from causal to catalytic models. Likewise, the central explanatory...
Learning a Theory of Causality
Goodman, Noah D.; Ullman, Tomer D.; Tenenbaum, Joshua B.
2011-01-01
The very early appearance of abstract knowledge is often taken as evidence for innateness. We explore the relative learning speeds of abstract and specific knowledge within a Bayesian framework and the role for innate structure. We focus on knowledge about causality, seen as a domain-general intuitive theory, and ask whether this knowledge can be…
Noldus, Johan
2013-01-01
We construct a Dirac theory on causal sets; a key element in the construction being that the causet must be regarded as emergent in an appropriate sense too. We further notice that mixed norm spaces appear in the construction allowing for negative norm particles and "ghosts".
The argumentative impact of causal relations
DEFF Research Database (Denmark)
Nielsen, Anne Ellerup
1996-01-01
such as causality, explanation and justification. In certain types of discourse, causal relations also imply an intentional element. This paper describes the way in which the semantic and pragmatic functions of causal markers can be accounted for in terms of linguistic and rhetorical theories of argumentation.......The semantic relations between and within utterances are marked by the use of connectors and adverbials. One type of semantic relations is causal relations expressed by causal markers such as because, therefore, so, for, etc. Some of these markers cover different types of causal relations...
Entanglement, holography and causal diamonds
de Boer, Jan; Haehl, Felix M.; Heller, Michal P.; Myers, Robert C.
2016-08-01
We argue that the degrees of freedom in a d-dimensional CFT can be reorganized in an insightful way by studying observables on the moduli space of causal diamonds (or equivalently, the space of pairs of timelike separated points). This 2 d-dimensional space naturally captures some of the fundamental nonlocality and causal structure inherent in the entanglement of CFT states. For any primary CFT operator, we construct an observable on this space, which is defined by smearing the associated one-point function over causal diamonds. Known examples of such quantities are the entanglement entropy of vacuum excitations and its higher spin generalizations. We show that in holographic CFTs, these observables are given by suitably defined integrals of dual bulk fields over the corresponding Ryu-Takayanagi minimal surfaces. Furthermore, we explain connections to the operator product expansion and the first law of entanglemententropy from this unifying point of view. We demonstrate that for small perturbations of the vacuum, our observables obey linear two-derivative equations of motion on the space of causal diamonds. In two dimensions, the latter is given by a product of two copies of a two-dimensional de Sitter space. For a class of universal states, we show that the entanglement entropy and its spin-three generalization obey nonlinear equations of motion with local interactions on this moduli space, which can be identified with Liouville and Toda equations, respectively. This suggests the possibility of extending the definition of our new observables beyond the linear level more generally and in such a way that they give rise to new dynamically interacting theories on the moduli space of causal diamonds. Various challenges one has to face in order to implement this idea are discussed.
Causal attribution and Mill's methods of experimental inquiry: past, present and prospect.
White, P A
2000-09-01
J. S. Mill proposed a set of Methods of Experimental Inquiry that were intended to guide causal inference under every conceivable set of circumstances in which experiments or observations could be carried out. The conceptual and historical relationship between these Methods and modern models of causal attribution is investigated. Mill's work retains contemporary relevance because his insights show how research can progress into presently uncharted waters. Following Mill, it is proposed that people use many different methods of causal attribution, the nature of which remains to be ascertained, and that the conditions that affect choice of method include the need to eliminate alternative causal candidates, whether single or multiple events are to be explained, the use of intervention or experiment as opposed to mere observation, and practical concerns.
Reconstructing Causal Biological Networks through Active Learning.
Directory of Open Access Journals (Sweden)
Hyunghoon Cho
Full Text Available Reverse-engineering of biological networks is a central problem in systems biology. The use of intervention data, such as gene knockouts or knockdowns, is typically used for teasing apart causal relationships among genes. Under time or resource constraints, one needs to carefully choose which intervention experiments to carry out. Previous approaches for selecting most informative interventions have largely been focused on discrete Bayesian networks. However, continuous Bayesian networks are of great practical interest, especially in the study of complex biological systems and their quantitative properties. In this work, we present an efficient, information-theoretic active learning algorithm for Gaussian Bayesian networks (GBNs, which serve as important models for gene regulatory networks. In addition to providing linear-algebraic insights unique to GBNs, leading to significant runtime improvements, we demonstrate the effectiveness of our method on data simulated with GBNs and the DREAM4 network inference challenge data sets. Our method generally leads to faster recovery of underlying network structure and faster convergence to final distribution of confidence scores over candidate graph structures using the full data, in comparison to random selection of intervention experiments.
Energy Technology Data Exchange (ETDEWEB)
Petrov, S.
1996-10-01
Languages with a solvable implication problem but without complete and consistent systems of inference rules (`poor` languages) are considered. The problem of existence of finite complete and consistent inference rule system for a ``poor`` language is stated independently of the language or rules syntax. Several properties of the problem arc proved. An application of results to the language of join dependencies is given.
Directory of Open Access Journals (Sweden)
Anne eSchlottmann
2013-07-01
Full Text Available Humans, even babies, perceive causality when one shape moves briefly and linearly after another. Motion timing is crucial in this and causal impressions disappear with short delays between motions. However, the role of temporal information is more complex: It is both a cue to causality and a factor that constrains processing. It affects ability to distinguish causality from non-causality, and social from mechanical causality. Here we study both issues with 3- to 7-year-olds and adults who saw two computer-animated squares and chose if a picture of mechanical, social or non-causality fit each event best. Prior work fit with the standard view that early in development, the distinction between the social and physical domains depends mainly on whether or not the agents make contact, and that this reflects concern with domain-specific motion onset, in particular, whether the motion is self-initiated or not. The present experiments challenge both parts of this position. In Experiments 1 and 2, we showed that not just spatial, but also animacy and temporal information affect how children distinguish between physical and social causality. In Experiments 3 and 4 we showed that children do not seem to use spatio-temporal information in perceptual causality to make inferences about self- or other-initiated motion onset. Overall, spatial contact may be developmentally primary in domain-specific perceptual causality in that it is processed easily and is dominant over competing cues, but it is not the only cue used early on and it is not used to infer motion onset. Instead, domain-specific causal impressions may be automatic reactions to specific perceptual configurations, with a complex role for temporal information.
Schlottmann, Anne; Cole, Katy; Watts, Rhianna; White, Marina
2013-01-01
Humans, even babies, perceive causality when one shape moves briefly and linearly after another. Motion timing is crucial in this and causal impressions disappear with short delays between motions. However, the role of temporal information is more complex: it is both a cue to causality and a factor that constrains processing. It affects ability to distinguish causality from non-causality, and social from mechanical causality. Here we study both issues with 3- to 7-year-olds and adults who saw two computer-animated squares and chose if a picture of mechanical, social or non-causality fit each event best. Prior work fit with the standard view that early in development, the distinction between the social and physical domains depends mainly on whether or not the agents make contact, and that this reflects concern with domain-specific motion onset, in particular, whether the motion is self-initiated or not. The present experiments challenge both parts of this position. In Experiments 1 and 2, we showed that not just spatial, but also animacy and temporal information affect how children distinguish between physical and social causality. In Experiments 3 and 4 we showed that children do not seem to use spatio-temporal information in perceptual causality to make inferences about self- or other-initiated motion onset. Overall, spatial contact may be developmentally primary in domain-specific perceptual causality in that it is processed easily and is dominant over competing cues, but it is not the only cue used early on and it is not used to infer motion onset. Instead, domain-specific causal impressions may be automatic reactions to specific perceptual configurations, with a complex role for temporal information.
Subspace-based Identification Algorithm for characterizing causal networks in resting brain.
Kadkhodaeian Bakhtiari, Shahab; Hossein-Zadeh, Gholam-Ali
2012-04-02
The resting brain has been extensively investigated for low frequency synchrony between brain regions, namely Functional Connectivity (FC). However the other main stream of brain connectivity analysis that seeks causal interactions between brain regions, Effective Connectivity (EC), has been little explored. Inherent complexity of brain activities in resting-state, as observed in BOLD (Blood Oxygenation-Level Dependant) fluctuations, calls for exploratory methods for characterizing these causal networks. On the other hand, the inevitable effects that hemodynamic system imposes on causal inferences in fMRI data, lead us toward the methods in which causal inferences can take place in latent neuronal level, rather than observed BOLD time-series. To simultaneously satisfy these two concerns, in this paper, we introduce a novel state-space system identification approach for studying causal interactions among brain regions in the absence of explicit cognitive task. This algorithm is a geometrically inspired method for identification of stochastic systems, purely based on output observations. Using extensive simulations, three aspects of our proposed method are investigated: ability in discriminating existent interactions from non-existent ones, the effect of observation noise, and downsampling on algorithm performance. Our simulations demonstrate that Subspace-based Identification Algorithm (SIA) is sufficiently robust against above-mentioned factors, and can reliably uncover the underlying causal interactions of resting-state fMRI. Furthermore, in contrast to previously established state-space approaches in Effective Connectivity studies, this method is able to characterize causal networks with large number of brain regions. In addition, we utilized the proposed algorithm for identification of causal relationships underlying anti-correlation of default-mode and Dorsal Attention Networks during the rest, using fMRI. We observed that Default-Mode Network places in a
Decomposing Granger Causality over the Spectrum
A. Lemmens (Aurélie); C. Croux (Christophe); M.G. Dekimpe (Marnik)
2004-01-01
textabstractWe develop a bivariate spectral Granger-causality test that can be applied at each individual frequency of the spectrum. The spectral approach to Granger causality has the distinct advantage that it allows to disentangle (potentially) di®erent Granger- causality relationships over di®ere
Representing Personal Determinants in Causal Structures.
Bandura, Albert
1984-01-01
Responds to Staddon's critique of the author's earlier article and addresses issues raised by Staddon's (1984) alternative models of causality. The author argues that it is not the formalizability of causal processes that is the issue but whether cognitive determinants of behavior are reducible to past stimulus inputs in causal structures.…
Designing Effective Supports for Causal Reasoning
Jonassen, David H.; Ionas, Ioan Gelu
2008-01-01
Causal reasoning represents one of the most basic and important cognitive processes that underpin all higher-order activities, such as conceptual understanding and problem solving. Hume called causality the "cement of the universe" [Hume (1739/2000). Causal reasoning is required for making predictions, drawing implications and…
Exploring Individual Differences in Preschoolers' Causal Stance
Alvarez, Aubry; Booth, Amy E.
2016-01-01
Preschoolers, as a group, are highly attuned to causality, and this attunement is known to facilitate memory, learning, and problem solving. However, recent work reveals substantial individual variability in the strength of children's "causal stance," as demonstrated by their curiosity about and preference for new causal information. In…
Expectations and Interpretations during Causal Learning
Luhmann, Christian C.; Ahn, Woo-kyoung
2011-01-01
In existing models of causal induction, 4 types of covariation information (i.e., presence/absence of an event followed by presence/absence of another event) always exert identical influences on causal strength judgments (e.g., joint presence of events always suggests a generative causal relationship). In contrast, we suggest that, due to…
Velocity requirements for causality violation
Modanese, Giovanni
2013-01-01
It is known that the hypothetical existence of superluminal signals would imply the logical possibility of active causal violation: an observer in relative motion with respect to a primary source could in principle emit secondary superluminal signals (triggered by the primary ones) which go back in time and deactivate the primary source before the initial emission. This is a direct consequence of the structure of the Lorentz transformations, sometimes called "Regge-Tolman paradox". It is straightforward to find a formula for the velocity of the moving observer required to produce the causality violation. When applied to some recent claims of slight superluminal propagation, this formula yields a required velocity very close to the speed of light; this raises some doubts about the real physical observability of such violations. We re-compute this velocity requirement introducing a realistic delay between the reception of the primary signal and the emission of the secondary. It turns out that for -any- delay it...
Painless causality in defect calculations
Cheung, C; Cheung, Charlotte; Magueijo, Joao
1997-01-01
Topological defects must respect causality, a statement leading to restrictive constraints on the power spectrum of the total cosmological perturbations they induce. Causality constraints have for long been known to require the presence of an under-density in the surrounding matter compensating the defect network on large scales. This so-called compensation can never be neglected and significantly complicates calculations in defect scenarios, eg. computing cosmic microwave background fluctuations. A quick and dirty way to implement the compensation are the so-called compensation fudge factors. Here we derive the complete photon-baryon-CDM backreaction effects in defect scenarios. The fudge factor comes out as an algebraic identity and so we drop the negative qualifier ``fudge''. The compensation scale is computed and physically interpreted. Secondary backreaction effects exist, and neglecting them constitutes the well-defined approximation scheme within which one should consider compensation factor calculatio...
Phenomenology of Causal Dynamical Triangulations
Mielczarek, Jakub
2015-01-01
The four dimensional Causal Dynamical Triangulations (CDT) approach to quantum gravity is already more than ten years old theory with numerous unprecedented predictions such as non-trivial phase structure of gravitational field and dimensional running. Here, we discuss possible empirical consequences of CDT derived based on the two features of the approach mentioned above. A possibility of using both astrophysical and cosmological observations to test CDT is discussed. We show that scenarios which can be ruled out at the empirical level exist.
Modeling of causality with metamaterials
Smolyaninov, Igor I.
2013-02-01
Hyperbolic metamaterials may be used to model a 2 + 1-dimensional Minkowski space-time in which the role of time is played by one of the spatial coordinates. When a metamaterial is built and illuminated with a coherent extraordinary laser beam, the stationary pattern of light propagation inside the metamaterial may be treated as a collection of particle world lines, which represents a complete ‘history’ of this 2 + 1-dimensional space-time. While this model may be used to build interesting space-time analogs, such as metamaterial ‘black holes’ and a metamaterial ‘big bang’, it lacks causality: since light inside the metamaterial may propagate back and forth along the ‘timelike’ spatial coordinate, events in the ‘future’ may affect events in the ‘past’. Here we demonstrate that a more sophisticated metamaterial model may fix this deficiency via breaking the mirror and temporal (PT) symmetries of the original model and producing one-way propagation along the ‘timelike’ spatial coordinate. The resulting 2 + 1-dimensional Minkowski space-time appears to be causal. This scenario may be considered as a metamaterial model of the Wheeler-Feynman absorber theory of causality.
Entanglement, Holography and Causal Diamonds
de Boer, Jan; Heller, Michal P; Myers, Robert C
2016-01-01
We argue that the degrees of freedom in a d-dimensional CFT can be re-organized in an insightful way by studying observables on the moduli space of causal diamonds (or equivalently, the space of pairs of timelike separated points). This 2d-dimensional space naturally captures some of the fundamental nonlocality and causal structure inherent in the entanglement of CFT states. For any primary CFT operator, we construct an observable on this space, which is defined by smearing the associated one-point function over causal diamonds. Known examples of such quantities are the entanglement entropy of vacuum excitations and its higher spin generalizations. We show that in holographic CFTs, these observables are given by suitably defined integrals of dual bulk fields over the corresponding Ryu-Takayanagi minimal surfaces. Furthermore, we explain connections to the operator product expansion and the first law of entanglement entropy from this unifying point of view. We demonstrate that for small perturbations of the va...
Nagao, Makoto
1990-01-01
Knowledge and Inference discusses an important problem for software systems: How do we treat knowledge and ideas on a computer and how do we use inference to solve problems on a computer? The book talks about the problems of knowledge and inference for the purpose of merging artificial intelligence and library science. The book begins by clarifying the concept of """"knowledge"""" from many points of view, followed by a chapter on the current state of library science and the place of artificial intelligence in library science. Subsequent chapters cover central topics in the artificial intellig
Cattaneo, Matias D.; Titiunik, Rocío; Vazquez-Bare, Gonzalo
2017-01-01
The regression discontinuity (RD) design is a popular quasi-experimental design for causal inference and policy evaluation. The most common inference approaches in RD designs employ "flexible" parametric and nonparametric local polynomial methods, which rely on extrapolation and large-sample approximations of conditional expectations…
Intelligent diagnosis of jaundice with dynamic uncertain causality graph model.
Hao, Shao-Rui; Geng, Shi-Chao; Fan, Lin-Xiao; Chen, Jia-Jia; Zhang, Qin; Li, Lan-Juan
2017-05-01
Jaundice is a common and complex clinical symptom potentially occurring in hepatology, general surgery, pediatrics, infectious diseases, gynecology, and obstetrics, and it is fairly difficult to distinguish the cause of jaundice in clinical practice, especially for general practitioners in less developed regions. With collaboration between physicians and artificial intelligence engineers, a comprehensive knowledge base relevant to jaundice was created based on demographic information, symptoms, physical signs, laboratory tests, imaging diagnosis, medical histories, and risk factors. Then a diagnostic modeling and reasoning system using the dynamic uncertain causality graph was proposed. A modularized modeling scheme was presented to reduce the complexity of model construction, providing multiple perspectives and arbitrary granularity for disease causality representations. A "chaining" inference algorithm and weighted logic operation mechanism were employed to guarantee the exactness and efficiency of diagnostic reasoning under situations of incomplete and uncertain information. Moreover, the causal interactions among diseases and symptoms intuitively demonstrated the reasoning process in a graphical manner. Verification was performed using 203 randomly pooled clinical cases, and the accuracy was 99.01% and 84.73%, respectively, with or without laboratory tests in the model. The solutions were more explicable and convincing than common methods such as Bayesian Networks, further increasing the objectivity of clinical decision-making. The promising results indicated that our model could be potentially used in intelligent diagnosis and help decrease public health expenditure.
Intelligent diagnosis of jaundice with dynamic uncertain causality graph model*
Hao, Shao-rui; Geng, Shi-chao; Fan, Lin-xiao; Chen, Jia-jia; Zhang, Qin; Li, Lan-juan
2017-01-01
Jaundice is a common and complex clinical symptom potentially occurring in hepatology, general surgery, pediatrics, infectious diseases, gynecology, and obstetrics, and it is fairly difficult to distinguish the cause of jaundice in clinical practice, especially for general practitioners in less developed regions. With collaboration between physicians and artificial intelligence engineers, a comprehensive knowledge base relevant to jaundice was created based on demographic information, symptoms, physical signs, laboratory tests, imaging diagnosis, medical histories, and risk factors. Then a diagnostic modeling and reasoning system using the dynamic uncertain causality graph was proposed. A modularized modeling scheme was presented to reduce the complexity of model construction, providing multiple perspectives and arbitrary granularity for disease causality representations. A “chaining” inference algorithm and weighted logic operation mechanism were employed to guarantee the exactness and efficiency of diagnostic reasoning under situations of incomplete and uncertain information. Moreover, the causal interactions among diseases and symptoms intuitively demonstrated the reasoning process in a graphical manner. Verification was performed using 203 randomly pooled clinical cases, and the accuracy was 99.01% and 84.73%, respectively, with or without laboratory tests in the model. The solutions were more explicable and convincing than common methods such as Bayesian Networks, further increasing the objectivity of clinical decision-making. The promising results indicated that our model could be potentially used in intelligent diagnosis and help decrease public health expenditure. PMID:28471111
Shifting the a priori: Hans Reichenbach on causality and probability 1915-1931
Energy Technology Data Exchange (ETDEWEB)
Stoeltzner, Michael [IZWT, Universitaet Wuppertal (Germany)
2008-07-01
I analyze the historical development of Reichenbach's ideas on causality and probability from his Ph.D. thesis in 1915 until the mid 1930s. Already in 1915, he developed two central themes. First, the principle of causality, to become applicable to physical phenomena, must be supplemented with a second principle, then called principle of the continuous probability function. Second, there existed no fundamental difference between the theory of error presupposed by any measuring science and the probabilistic theories of physics. This implied that strict and statistical laws were lawful in the same sense - an idea that Reichenbach abandoned in his 1944 Philosophic Foundations of Quantum Mechanics. As regards the principles' epistemological status, Reichenbach, initially, considered both as synthetic a priori. During the 1920s he held that causality could fail in the empirical world, while the more basic principle of probability inference was immune to refutation. Both principles, accordingly, had changed rank. While originally the second principle had only represented an indispensable complement to causality, it now represented a condition for the possibility of scientific experience, even though it could not be justified by a transcendental argument. Probability inference also allowed Reichenbach to base the direction of time on microscopic causal order rather than entropy increase.
Experimental verification of an indefinite causal order
Rubino, Giulia; Rozema, Lee A.; Feix, Adrien; Araújo, Mateus; Zeuner, Jonas M.; Procopio, Lorenzo M.; Brukner, Časlav; Walther, Philip
2017-01-01
Investigating the role of causal order in quantum mechanics has recently revealed that the causal relations of events may not be a priori well defined in quantum theory. Although this has triggered a growing interest on the theoretical side, creating processes without a causal order is an experimental task. We report the first decisive demonstration of a process with an indefinite causal order. To do this, we quantify how incompatible our setup is with a definite causal order by measuring a “causal witness.” This mathematical object incorporates a series of measurements that are designed to yield a certain outcome only if the process under examination is not consistent with any well-defined causal order. In our experiment, we perform a measurement in a superposition of causal orders—without destroying the coherence—to acquire information both inside and outside of a “causally nonordered process.” Using this information, we experimentally determine a causal witness, demonstrating by almost 7 SDs that the experimentally implemented process does not have a definite causal order.
Probability and Statistical Inference
Prosper, Harrison B.
2006-01-01
These lectures introduce key concepts in probability and statistical inference at a level suitable for graduate students in particle physics. Our goal is to paint as vivid a picture as possible of the concepts covered.
Norms and customs: causally important or causally impotent?
Jones, Todd
2010-01-01
In this article, I argue that norms and customs, despite frequently being described as being causes of behavior in the social sciences and ordinary conversation, cannot really cause behavior. Terms like "norms" and the like seem to refer to philosophically disreputable disjunctive properties. More problematically, even if they do not, or even if there can be disjunctive properties after all, I argue that norms and customs still cannot cause behavior. The social sciences would be better off without referring to properties like norms and customs as if they could be causal.
Introductory statistical inference
Mukhopadhyay, Nitis
2014-01-01
This gracefully organized text reveals the rigorous theory of probability and statistical inference in the style of a tutorial, using worked examples, exercises, figures, tables, and computer simulations to develop and illustrate concepts. Drills and boxed summaries emphasize and reinforce important ideas and special techniques.Beginning with a review of the basic concepts and methods in probability theory, moments, and moment generating functions, the author moves to more intricate topics. Introductory Statistical Inference studies multivariate random variables, exponential families of dist
Inferring sparse networks for noisy transient processes
Tran, Hoang M.; Bukkapatnam, Satish T. S.
2016-02-01
Inferring causal structures of real world complex networks from measured time series signals remains an open issue. The current approaches are inadequate to discern between direct versus indirect influences (i.e., the presence or absence of a directed arc connecting two nodes) in the presence of noise, sparse interactions, as well as nonlinear and transient dynamics of real world processes. We report a sparse regression (referred to as the -min) approach with theoretical bounds on the constraints on the allowable perturbation to recover the network structure that guarantees sparsity and robustness to noise. We also introduce averaging and perturbation procedures to further enhance prediction scores (i.e., reduce inference errors), and the numerical stability of -min approach. Extensive investigations have been conducted with multiple benchmark simulated genetic regulatory network and Michaelis-Menten dynamics, as well as real world data sets from DREAM5 challenge. These investigations suggest that our approach can significantly improve, oftentimes by 5 orders of magnitude over the methods reported previously for inferring the structure of dynamic networks, such as Bayesian network, network deconvolution, silencing and modular response analysis methods based on optimizing for sparsity, transients, noise and high dimensionality issues.
Primordial Magnetic Fields and Causality
Durrer, R; Durrer, Ruth; Caprini, Chiara
2003-01-01
In this letter we discuss the implications of causality on a primordial magnetic field. We show that the residual field on large scales is much stronger suppressed than usually assumed and that a helical component is even suppressed even more than the parity even part. We show that due to this strong suppression, even maximal primordial fields generated at the electroweak phase transition can just marginally seed the fields in galaxies and clusters, but they cannot leave any detectable imprint on the cosmic microwave background.
Random number generators and causality
Energy Technology Data Exchange (ETDEWEB)
Larrondo, H.A. [Facultad de Ingenieria, Universidad Nacional de Mar del Plata, Juan B. Justo 4302, 7600 Mar del Plata (Argentina)]. E-mail: larrondo@fi.mdp.edu.ar; Martin, M.T. [Instituto de Fisica (IFLP), Facultad de Ciencias Exactas, Universidad Nacional de La Plata and Argentina' s National Council (CONICET), C.C. 727, 1900 La Plata (Argentina)]. E-mail: mtmartin@venus.unlp.edu.ar; Gonzalez, C.M. [Facultad de Ingenieria, Universidad Nacional de Mar del Plata, Juan B. Justo 4302, 7600 Mar del Plata (Argentina)]. E-mail: cmgonzal@fi.mdp.edu.ar; Plastino, A. [Instituto de Fisica (IFLP), Facultad de Ciencias Exactas, Universidad Nacional de La Plata and Argentina' s National Council (CONICET), C.C. 727, 1900 La Plata (Argentina)]. E-mail: plastino@venus.unlp.edu.ar; Rosso, O.A. [Chaos and Biology Group, Instituto de Calculo, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Pabellon II, Ciudad Universitaria, 1428 Ciudad de Buenos Aires (Argentina)]. E-mail: oarosso@fibertel.com.ar
2006-04-03
We advance a prescription to randomize physical or algorithmic Random Number Generators (RNG's) that do not pass Marsaglia's DIEHARD test suite and discuss a special physical quantifier, based on an intensive statistical complexity measure, that is able to adequately assess the improvements produced thereby. Eight RNG's are evaluated and the associated results are compared to those obtained by recourse to Marsaglia's DIEHARD test suite. Our quantifier, which is evaluated using causality arguments, can forecast whether a given RNG will pass the above mentioned test.
Random number generators and causality
Larrondo, H. A.; Martín, M. T.; González, C. M.; Plastino, A.; Rosso, O. A.
2006-04-01
We advance a prescription to randomize physical or algorithmic Random Number Generators (RNG's) that do not pass Marsaglia's DIEHARD test suite and discuss a special physical quantifier, based on an intensive statistical complexity measure, that is able to adequately assess the improvements produced thereby. Eight RNG's are evaluated and the associated results are compared to those obtained by recourse to Marsaglia's DIEHARD test suite. Our quantifier, which is evaluated using causality arguments, can forecast whether a given RNG will pass the above mentioned test.
The Functions of Danish Causal Conjunctions
Directory of Open Access Journals (Sweden)
Rita Therkelsen
2004-01-01
Full Text Available In the article I propose an analysis of the Danish causal conjunctions fordi, siden and for based on the framework of Danish Functional Grammar. As conjunctions they relate two clauses, and their semantics have in common that it indicates a causal relationship between the clauses. The causal conjunctions are different as far as their distribution is concerned; siden conjoins a subordinate clause and a main clause, for conjoins two main clauses, and fordi is able to do both. Methodologically I have based my analysis on these distributional properties comparing siden and fordi conjoining a subordinate and a main clause, and comparing for and fordi conjoining two main clauses, following the thesis that they would establish a causal relationship between different kinds of content. My main findings are that fordi establishes a causal relationship between the events referred to by the two clauses, and the whole utterance functions as a statement of this causal relationship. Siden presupposes such a general causal relationship between the two events and puts forward the causing event as a reason for assuming or wishing or ordering the caused event, siden thus establishes a causal relationship between an event and a speech act. For equally presupposes a general causal relationship between two events and it establishes a causal relationship between speech acts, and fordi conjoining two main clauses is able to do this too, but in this position it also maintains its event-relating ability, the interpretation depending on contextual factors.
Modeling of causality with metamaterials
Smolyaninov, Igor I
2012-01-01
Hyperbolic metamaterials may be used to model a 2+1 dimensional Minkowski spacetime in which the role of time is played by one of the spatial coordinates. When a metamaterial is built and illuminated with a coherent extraordinary laser beam, the stationary pattern of light propagation inside the metamaterial may be treated as a collection of particle world lines, which represents a complete history of this 2+1 dimensional spacetime. While this model may be used to build interesting spacetime analogs, such as metamaterial black holes and big bang, it lacks causality: since light inside the metamaterial may propagate back and force along the timelike spatial coordinate, events in the future may affect events in the past. Here we demonstrate that a more sophisticated metamaterial model may fix this deficiency via breaking the mirror and temporal (PT) symmetries of the original model and producing one-way propagation along the timelike spatial coordinate. Resulting 2+1 Minkowski spacetime appears to be causal. Th...
Causal viscous cosmology without singularities
Laciana, Carlos E
2016-01-01
An isotropic and homogeneous cosmological model with a source of dark energy is studied. That source is simulated with a viscous relativistic fluid with minimal causal correction. In this model the restrictions on the parameters coming from the following conditions are analized: a) energy density without singularities along time, b) scale factor increasing with time, c) universe accelerated at present time, d) state equation for dark energy with "w" bounded and close to -1. It is found that those conditions are satified for the following two cases. i) When the transport coefficient ({\\tau}_{{\\Pi}}), associated to the causal correction, is negative, with the aditional restriction {\\zeta}|{\\tau}_{{\\Pi}}|>2/3, where {\\zeta} is the relativistic bulk viscosity coefficient. The state equation is in the "phantom" energy sector. ii) For {\\tau}_{{\\Pi}} positive, in the "k-essence" sector. It is performed an exact calculation for the case where the equation of state is constant, finding that option (ii) is favored in r...
Assessment of network inference methods: how to cope with an underdetermined problem.
Directory of Open Access Journals (Sweden)
Caroline Siegenthaler
Full Text Available The inference of biological networks is an active research area in the field of systems biology. The number of network inference algorithms has grown tremendously in the last decade, underlining the importance of a fair assessment and comparison among these methods. Current assessments of the performance of an inference method typically involve the application of the algorithm to benchmark datasets and the comparison of the network predictions against the gold standard or reference networks. While the network inference problem is often deemed underdetermined, implying that the inference problem does not have a (unique solution, the consequences of such an attribute have not been rigorously taken into consideration. Here, we propose a new procedure for assessing the performance of gene regulatory network (GRN inference methods. The procedure takes into account the underdetermined nature of the inference problem, in which gene regulatory interactions that are inferable or non-inferable are determined based on causal inference. The assessment relies on a new definition of the confusion matrix, which excludes errors associated with non-inferable gene regulations. For demonstration purposes, the proposed assessment procedure is applied to the DREAM 4 In Silico Network Challenge. The results show a marked change in the ranking of participating methods when taking network inferability into account.
Spin foam models as energetic causal sets
Cortês, Marina
2014-01-01
Energetic causal sets are causal sets endowed by a flow of energy-momentum between causally related events. These incorporate a novel mechanism for the emergence of space-time from causal relations. Here we construct a spin foam model which is also an energetic causal set model. This model is closely related to the model introduced by Wieland, and this construction makes use of results used there. What makes a spin foam model also an energetic causal set is Wieland's identification of new momenta, conserved at events (or four-simplices), whose norms are not mass, but the volume of tetrahedra. This realizes the torsion constraints, which are missing in previous spin foam models, and are needed to relate the connection dynamics to those of the metric, as in general relativity. This identification makes it possible to apply the new mechanism for the emergence of space-time to a spin foam model.
Linear causal modeling with structural equations
Mulaik, Stanley A
2009-01-01
Emphasizing causation as a functional relationship between variables that describe objects, Linear Causal Modeling with Structural Equations integrates a general philosophical theory of causation with structural equation modeling (SEM) that concerns the special case of linear causal relations. In addition to describing how the functional relation concept may be generalized to treat probabilistic causation, the book reviews historical treatments of causation and explores recent developments in experimental psychology on studies of the perception of causation. It looks at how to perceive causal
Identifying Causal Effects with Computer Algebra
García-Puente, Luis David; Sullivant, Seth
2010-01-01
The long-standing identification problem for causal effects in graphical models has many partial results but lacks a systematic study. We show how computer algebra can be used to either prove that a causal effect can be identified, generically identified, or show that the effect is not generically identifiable. We report on the results of our computations for linear structural equation models, where we determine precisely which causal effects are generically identifiable for all graphs on three and four vertices.
Deontic introduction: A theory of inference from is to ought.
Elqayam, Shira; Thompson, Valerie A; Wilkinson, Meredith R; Evans, Jonathan St B T; Over, David E
2015-09-01
Humans have a unique ability to generate novel norms. Faced with the knowledge that there are hungry children in Somalia, we easily and naturally infer that we ought to donate to famine relief charities. Although a contentious and lively issue in metaethics, such inference from "is" to "ought" has not been systematically studied in the psychology of reasoning. We propose that deontic introduction is the result of a rich chain of pragmatic inference, most of it implicit; specifically, when an action is causally linked to a valenced goal, valence transfers to the action and bridges into a deontic conclusion. Participants in 5 experiments were presented with utility conditionals in which an action results in a benefit, a cost, or neutral outcome (e.g., "If Lisa buys the booklet, she will pass the exam") and asked to evaluate how strongly deontic conclusions (e.g., "Lisa should buy the booklet") follow from the premises. Findings show that the direction of the conclusions was determined by outcome valence (Experiments 1a and 1b), whereas their strength was determined by the strength of the causal link between action and outcome (Experiments 1, 2a, and 2b). We also found that deontic introduction is defeasible and can be suppressed by additional premises that interfere with any of the links in the implicit chain of inference (Experiments 2a, 2b, and 3). We propose that deontic introduction is a species-specific generative capacity whose function is to regulate future behavior.
Bagging statistical network inference from large-scale gene expression data.
Ricardo de Matos Simoes; Frank Emmert-Streib
2012-01-01
Modern biology and medicine aim at hunting molecular and cellular causes of biological functions and diseases. Gene regulatory networks (GRN) inferred from gene expression data are considered an important aid for this research by providing a map of molecular interactions. Hence, GRNs have the potential enabling and enhancing basic as well as applied research in the life sciences. In this paper, we introduce a new method called BC3NET for inferring causal gene regulatory networks from large-sc...
The role of the right parietal lobe in the perception of causality: a tDCS study.
Straube, Benjamin; Wolk, David; Chatterjee, Anjan
2011-12-01
Inferring causality is a fundamental feature of human cognition that allows us to predict outcomes in everyday events. Here, we use direct current stimulation (tDCS) to investigate the role of the right parietal lobe in the perception of causal events. Based on the results of a previous fMRI investigation, we hypothesized that the right parietal lobe plays a specific role in the processing of spatial attributes that contribute to judgments of causality. In line with our hypothesis, we found polarization-dependent modulation of causal judgments and corresponding reaction times (RTs) for trials with increasing violation of spatial contiguity in launching events. This effect was further modulated by temporal violations, as the effect of tDCS on the use of spatial information for causality judgements was strongest for trials with high temporal violations. Thus, especially for ambiguous trials with regard to temporal patterns, cathodal stimulation led to more liberal causality judgments for trials with high angles in movement trajectory. Furthermore, we found faster RTs after anodal stimulation of the right parietal lobe. These findings suggest a reduced influence of spatial attributes on the perception of causality after cathode stimulation of the right parietal lobe and an increased processing efficiency after anodal stimuli of the same region. These data demonstrate polarization-dependent tDCS modulation of spatial processing mechanisms within the right parietal lobe that contribute to the perception of causality.
Energy Technology Data Exchange (ETDEWEB)
Hanson, K.M.; Cunningham, G.S.
1996-04-01
The authors are developing a computer application, called the Bayes Inference Engine, to provide the means to make inferences about models of physical reality within a Bayesian framework. The construction of complex nonlinear models is achieved by a fully object-oriented design. The models are represented by a data-flow diagram that may be manipulated by the analyst through a graphical programming environment. Maximum a posteriori solutions are achieved using a general, gradient-based optimization algorithm. The application incorporates a new technique of estimating and visualizing the uncertainties in specific aspects of the model.
Knuth, Kevin H
2010-01-01
We present a foundation for inference that unites and significantly extends the approaches of Kolmogorov and Cox. Our approach is based on quantifying finite lattices of logical statements in a way that satisfies general lattice symmetries. With other applications in mind, our derivations assume minimal symmetries, relying on neither complementarity nor continuity or differentiability. Each relevant symmetry corresponds to an axiom of quantification, and these axioms are used to derive a unique set of rules governing quantification of the lattice. These rules form the familiar probability calculus. We also derive a unique quantification of divergence and information. Taken together these results form a simple and clear foundation for the quantification of inference.
Making Type Inference Practical
DEFF Research Database (Denmark)
Schwartzbach, Michael Ignatieff; Oxhøj, Nicholas; Palsberg, Jens
1992-01-01
We present the implementation of a type inference algorithm for untyped object-oriented programs with inheritance, assignments, and late binding. The algorithm significantly improves our previous one, presented at OOPSLA'91, since it can handle collection classes, such as List, in a useful way. Abo....... Experiments indicate that the implementation type checks as much as 100 lines pr. second. This results in a mature product, on which a number of tools can be based, for example a safety tool, an image compression tool, a code optimization tool, and an annotation tool. This may make type inference for object...
Causality effects on accelerating light pulses
National Research Council Canada - National Science Library
Kaminer, Ido; Lumer, Yaakov; Segev, Mordechai; Christodoulides, Demetrios N
2011-01-01
.... We explore the effects of causality, and find that, whereas decelerating pulses can asymptotically reach zero group velocity, pulses that accelerate towards infinite group velocity inevitably break...
Scalar Curvature of a Causal Set
Benincasa, Dionigi M. T.; Dowker, Fay
2010-05-01
A one parameter family of retarded linear operators on scalar fields on causal sets is introduced. When the causal set is well approximated by 4 dimensional Minkowski spacetime, the operators are Lorentz invariant but nonlocal, are parametrized by the scale of the nonlocality, and approximate the continuum scalar D’Alembertian □ when acting on fields that vary slowly on the nonlocality scale. The same operators can be applied to scalar fields on causal sets which are well approximated by curved spacetimes in which case they approximate □-(1)/(2)R where R is the Ricci scalar curvature. This can used to define an approximately local action functional for causal sets.
Causal Structure of Brain Physiology after Brain Injury from Subarachnoid Hemorrhage.
Directory of Open Access Journals (Sweden)
Jan Claassen
Full Text Available High frequency physiologic data are routinely generated for intensive care patients. While massive amounts of data make it difficult for clinicians to extract meaningful signals, these data could provide insight into the state of critically ill patients and guide interventions. We develop uniquely customized computational methods to uncover the causal structure within systemic and brain physiologic measures recorded in a neurological intensive care unit after subarachnoid hemorrhage. While the data have many missing values, poor signal-to-noise ratio, and are composed from a heterogeneous patient population, our advanced imputation and causal inference techniques enable physiologic models to be learned for individuals. Our analyses confirm that complex physiologic relationships including demand and supply of oxygen underlie brain oxygen measurements and that mechanisms for brain swelling early after injury may differ from those that develop in a delayed fashion. These inference methods will enable wider use of ICU data to understand patient physiology.
Causal Structure of Brain Physiology after Brain Injury from Subarachnoid Hemorrhage
Claassen, Jan; Rahman, Shah Atiqur; Huang, Yuxiao; Frey, Hans-Peter; Schmidt, J. Michael; Albers, David; Falo, Cristina Maria; Park, Soojin; Agarwal, Sachin; Connolly, E. Sander; Kleinberg, Samantha
2016-01-01
High frequency physiologic data are routinely generated for intensive care patients. While massive amounts of data make it difficult for clinicians to extract meaningful signals, these data could provide insight into the state of critically ill patients and guide interventions. We develop uniquely customized computational methods to uncover the causal structure within systemic and brain physiologic measures recorded in a neurological intensive care unit after subarachnoid hemorrhage. While the data have many missing values, poor signal-to-noise ratio, and are composed from a heterogeneous patient population, our advanced imputation and causal inference techniques enable physiologic models to be learned for individuals. Our analyses confirm that complex physiologic relationships including demand and supply of oxygen underlie brain oxygen measurements and that mechanisms for brain swelling early after injury may differ from those that develop in a delayed fashion. These inference methods will enable wider use of ICU data to understand patient physiology. PMID:27123582
Causal ubiquity in quantum physics. A superluminal and local-causal physical ontology
Energy Technology Data Exchange (ETDEWEB)
Neelamkavil, Raphael
2014-07-01
A fixed highest criterial velocity (of light) in STR (special theory of relativity) is a convention for a layer of physical inquiry. QM (Quantum Mechanics) avoids action-at-a-distance using this concept, but accepts non-causality and action-at-a-distance in EPR (Einstein-Podolsky-Rosen-Paradox) entanglement experiments. Even in such allegedly [non-causal] processes, something exists processually in extension-motion, between the causal and the [non-causal]. If STR theoretically allows real-valued superluminal communication between EPR entangled particles, quantum processes become fully causal. That is, the QM world is sub-luminally, luminally and superluminally local-causal throughout, and the Law of Causality is ubiquitous in the micro-world. Thus, ''probabilistic causality'' is a merely epistemic term.
Inferring human intentions from the brain data
DEFF Research Database (Denmark)
Stanek, Konrad
The human brain is a massively complex organ composed of approximately a hundred billion densely interconnected, interacting neural cells. The neurons are not wired randomly - instead, they are organized in local functional assemblies. It is believed that the complex patterns of dynamic electric...... discharges across the neural tissue are responsible for emergence of high cognitive function, conscious perception and voluntary action. The brain’s capacity to exercise free will, or internally generated free choice, has long been investigated by philosophers, psychologists and neuroscientists. Rather than...... assuming a causal power of conscious will, the neuroscience of volition is based on the premise that "mental states rest on brain processes”, and hence by measuring spatial and temporal correlates of volition in carefully controlled experiments we can infer about their underlying mind processes, including...
Causal compensated perturbations in cosmology
Energy Technology Data Exchange (ETDEWEB)
Veeraraghavan, S.; Stebbins, A. (Harvard-Smithsonian Center for Astrophysics, Cambridge, MA (USA) California Univ., Berkeley (USA) Canadian Institute for Theoretical Astrophysics, Toronto (Canada))
1990-12-01
A theoretical framework is developed to calculate linear perturbations in the gravitational and matter fields which arise causally in response to the presence of stiff matter sources in a FRW cosmology. It is shown that, in order to satisfy energy and momentum conservation, the gravitational fields of the source must be compensated by perturbations in the matter and gravitational fields, and the role of such compensation in containing the initial inhomogeneities in their subsequent evolution is discussed. A complete formal solution is derived in terms of Green functions for the perturbations produced by an arbitrary source in a flat universe containing cold dark matter. Approximate Green function solutions are derived for the late-time density perturbations and late-time gravitational waves in a universe containing a radiation fluid. A cosmological energy-momentum pseudotensor is defined to clarify the nature of energy and momentum conservation in the expanding universe. 55 refs.
Comparison theorems for causal diamonds
Berthiere, Clement; Solodukhin, Sergey N
2015-01-01
We formulate certain inequalities for the geometric quantities characterizing causal diamonds in curved and Minkowski spacetimes. These inequalities involve the red-shift factor which, as we show explicitly in the spherically symmetric case, is monotonic in the radial direction and it takes its maximal value at the centre. As a byproduct of our discussion we re-derive Bishop's inequality without assuming the positivity of the spatial Ricci tensor. We then generalize our considerations to arbitrary, static and not necessarily spherically symmetric, asymptotically flat spacetimes. In the case of spacetimes with a horizon our generalization involves the so-called {\\it domain of dependence}. The respective volume, expressed in terms of the duration measured by a distant observer compared with the volume of the domain in Minkowski spacetime, exhibits behaviours which differ if $d=4$ or $d>4$. This peculiarity of four dimensions is due to the logarithmic subleading term in the asymptotic expansion of the metric nea...
Teaching-Learning by Means of a Fuzzy-Causal User Model
Peña Ayala, Alejandro
In this research the teaching-learning phenomenon that occurs during an E-learning experience is tackled from a fuzzy-causal perspective. The approach is suitable for dealing with intangible objects of a domain, such as personality, that are stated as linguistic variables. In addition, the bias that teaching content exerts on the user’s mind is sketched through causal relationships. Moreover, by means of fuzzy-causal inference, the user’s apprenticeship is estimated prior to delivering a lecture. This supposition is taken into account to adapt the behavior of a Web-based education system (WBES). As a result of an experimental trial, volunteers that took options of lectures chosen by this user model (UM) achieved higher learning than participants who received lectures’ options that were randomly selected. Such empirical evidence contributes to encourage researchers of the added value that a UM offers to adapt a WBES.
Prenatal nutrition, epigenetics and schizophrenia risk: can we test causal effects?
Kirkbride, James B; Susser, Ezra; Kundakovic, Marija; Kresovich, Jacob K; Davey Smith, George; Relton, Caroline L
2012-06-01
We posit that maternal prenatal nutrition can influence offspring schizophrenia risk via epigenetic effects. In this article, we consider evidence that prenatal nutrition is linked to epigenetic outcomes in offspring and schizophrenia in offspring, and that schizophrenia is associated with epigenetic changes. We focus upon one-carbon metabolism as a mediator of the pathway between perturbed prenatal nutrition and the subsequent risk of schizophrenia. Although post-mortem human studies demonstrate DNA methylation changes in brains of people with schizophrenia, such studies cannot establish causality. We suggest a testable hypothesis that utilizes a novel two-step Mendelian randomization approach, to test the component parts of the proposed causal pathway leading from prenatal nutritional exposure to schizophrenia. Applied here to a specific example, such an approach is applicable for wider use to strengthen causal inference of the mediating role of epigenetic factors linking exposures to health outcomes in population-based studies.
Watson, Jane
2007-01-01
Inference, or decision making, is seen in curriculum documents as the final step in a statistical investigation. For a formal statistical enquiry this may be associated with sophisticated tests involving probability distributions. For young students without the mathematical background to perform such tests, it is still possible to draw informal…
Energy Technology Data Exchange (ETDEWEB)
Garcia-Parrado, Alfonso [Departamento de Fisica Teorica, Universidad del Pais Vasco, Apartado 644, 48080 Bilbao (Spain); Sanchez, Miguel [Departamento de Geometria y Topologia, Facultad de Ciencias, Universidad de Granada, Avenida Fuentenueva s/n, 18071 Granada (Spain)
2005-11-07
Recently (Garcia-Parrado and Senovilla 2003 Class. Quantum Grav. 20 625-64) the concept of causal mapping between spacetimes, essentially equivalent in this context to the chronological map defined in abstract chronological spaces, and the related notion of causal structure, have been introduced as new tools to study causality in Lorentzian geometry. In the present paper, these tools are further developed in several directions such as (i) causal mappings-and, thus, abstract chronological ones-do not preserve two levels of the standard hierarchy of causality conditions (however, they preserve the remaining levels as shown in the above reference), (ii) even though global hyperbolicity is a stable property (in the set of all time-oriented Lorentzian metrics on a fixed manifold), the causal structure of a globally hyperbolic spacetime can be unstable against perturbations; in fact, we show that the causal structures of Minkowski and Einstein static spacetimes remain stable, whereas that of de Sitter becomes unstable, (iii) general criteria allow us to discriminate different causal structures in some general spacetimes (e.g. globally hyperbolic, stationary standard); in particular, there are infinitely many different globally hyperbolic causal structures (and thus, different conformal ones) on R{sup 2} (iv) plane waves with the same number of positive eigenvalues in the frequency matrix share the same causal structure and, thus, they have equal causal extensions and causal boundaries.
The Power of Causal Beliefs and Conflicting Evidence on Causal Judgments and Decision Making
Garcia-Retamero, Rocio; Muller, Stephanie M.; Catena, Andres; Maldonado, Antonio
2009-01-01
In two experiments, we investigated the relative impact of causal beliefs and empirical evidence on both decision making and causal judgments, and whether this relative impact could be altered by previous experience. 2. Selected groups of participants in both experiments received pre-training with either causal or neutral cues, or no pre-training…
Bell's theorem, inference, and quantum transactions
Garrett, A. J. M.
1990-04-01
Bell's theorem is expounded as an analysis in Bayesian inference. Assuming the result of a spin measurement on a particle is governed by a causal variable internal (hidden, “local”) to the particle, one learns about it by making a spin measurement; thence about the internal variable of a second particle correlated with the first; and from there predicts the probabilistic result of spin measurements on the second particle. Such predictions are violated by experiment: locality/causality fails. The statistical nature of the observations rules out signalling; acausal, superluminal, or otherwise. Quantum mechanics is irrelevant to this reasoning, although its correct predictions of experiment imply that it has a nonlocal/acausal interpretation. Cramer's new transactional interpretation, which incorporates this feature by adapting the Wheeler-Feynman idea of advanced and retarded processes to the quantum laws, is advocated. It leads to an invaluable way of envisaging quantum processes. The usual paradoxes melt before this, and one, the “delayed choice” experiment, is chosen for detailed inspection. Nonlocality implies practical difficulties in influencing hidden variables, which provides a very plausible explanation for why they have not yet been found; from this standpoint, Bell's theorem reinforces arguments in favor of hidden variables.
Dynamic Uncertain Causality Graph for Knowledge Representation and Reasoning: Discrete DAG Cases
Institute of Scientific and Technical Information of China (English)
Qin Zhang
2012-01-01
Developed from the dynamic causality diagram (DCD) model,a new approach for knowledge representation and reasoning named as dynamic uncertain causality graph (DUCG) is presented,which focuses on the compact representation of complex uncertain causalities and efficient probabilistic inference.It is pointed out that the existing models of compact representation and inference in Bayesian Network (BN) is applicable in single-valued cases,but may not be suitable to be applied in multi-valued cases.DUCG overcomes this problem and beyond.The main features of DUCG are:1) compactly and graphically representing complex conditional probability distributions (CPDs),regardless of whether the cases are single-valued or multi-valued; 2) able to perform exact reasoning in the case of the incomplete knowledge representation;3) simplifying the graphical knowledge base conditional on observations before other calculations,so that the scale and complexity of problem can be reduced exponentially; 4) the efficient two-step inference algorithm consisting of (a) logic operation to find all possible hypotheses in concern for given observations and (b) the probability calculation for these hypotheses; and 5) much less relying on the parameter accuracy.An alarm system example is provided to illustrate the DUCG methodology.
Causal Mediation Analysis: Warning! Assumptions Ahead
Keele, Luke
2015-01-01
In policy evaluations, interest may focus on why a particular treatment works. One tool for understanding why treatments work is causal mediation analysis. In this essay, I focus on the assumptions needed to estimate mediation effects. I show that there is no "gold standard" method for the identification of causal mediation effects. In…
Causal random geometry from stochastic quantization
DEFF Research Database (Denmark)
Ambjørn, Jan; Loll, R.; Westra, W.
2010-01-01
in this short note we review a recently found formulation of two-dimensional causal quantum gravity defined through Causal Dynamical Triangulations and stochastic quantization. This procedure enables one to extract the nonperturbative quantum Hamiltonian of the random surface model including the...
Causal Moderation Analysis Using Propensity Score Methods
Dong, Nianbo
2012-01-01
This paper is based on previous studies in applying propensity score methods to study multiple treatment variables to examine the causal moderator effect. The propensity score methods will be demonstrated in a case study to examine the causal moderator effect, where the moderators are categorical and continuous variables. Moderation analysis is an…
The causal order on the ambient boundary
Antoniadis, Ignatios; Papadopoulos, Kyriakos
2016-01-01
We analyse the causal structure of the ambient boundary, the conformal infinity of the ambient (Poincar\\'e) metric. Using topological tools we show that the only causal relation compatible with the global topology of the boundary spacetime is the horismos order. This has important consequences for the notion of time in the conformal geometry of the ambient boundary.
Causal Indicators Can Help to Interpret Factors
Bentler, Peter M.
2016-01-01
The latent factor in a causal indicator model is no more than the latent factor of the factor part of the model. However, if the causal indicator variables are well-understood and help to improve the prediction of individuals' factor scores, they can help to interpret the meaning of the latent factor. Aguirre-Urreta, Rönkkö, and Marakas (2016)…
On the spectral formulation of Granger causality.
Chicharro, D
2011-12-01
Spectral measures of causality are used to explore the role of different rhythms in the causal connectivity between brain regions. We study several spectral measures related to Granger causality, comprising the bivariate and conditional Geweke measures, the directed transfer function, and the partial directed coherence. We derive the formulation of dependence and causality in the spectral domain from the more general formulation in the information-theory framework. We argue that the transfer entropy, the most general measure derived from the concept of Granger causality, lacks a spectral representation in terms of only the processes associated with the recorded signals. For all the spectral measures we show how they are related to mutual information rates when explicitly considering the parametric autoregressive representation of the processes. In this way we express the conditional Geweke spectral measure in terms of a multiple coherence involving innovation variables inherent to the autoregressive representation. We also link partial directed coherence with Sims' criterion of causality. Given our results, we discuss the causal interpretation of the spectral measures related to Granger causality and stress the necessity to explicitly consider their specific formulation based on modeling the signals as linear Gaussian stationary autoregressive processes.
mediation: R Package for Causal Mediation Analysis
Directory of Open Access Journals (Sweden)
Dustin Tingley
2014-09-01
Full Text Available In this paper, we describe the R package mediation for conducting causal mediation analysis in applied empirical research. In many scientific disciplines, the goal of researchers is not only estimating causal effects of a treatment but also understanding the process in which the treatment causally affects the outcome. Causal mediation analysis is frequently used to assess potential causal mechanisms. The mediation package implements a comprehensive suite of statistical tools for conducting such an analysis. The package is organized into two distinct approaches. Using the model-based approach, researchers can estimate causal mediation effects and conduct sensitivity analysis under the standard research design. Furthermore, the design-based approach provides several analysis tools that are applicable under different experimental designs. This approach requires weaker assumptions than the model-based approach. We also implement a statistical method for dealing with multiple (causally dependent mediators, which are often encountered in practice. Finally, the package also offers a methodology for assessing causal mediation in the presence of treatment noncompliance, a common problem in randomized trials.
Towards Spectral Geometry for Causal Sets
Yazdi, Yasaman K
2016-01-01
We show that the Feynman propagator (or the d'Alembertian) of a causal set contains the complete information about the causal set. Intuitively, this is because the Feynman propagator, being a correlator that decays with distance, provides a measure for the invariant distance between pairs of events. Further, we show that even the spectra alone (of the self-adjoint and anti-self-adjoint parts) of the propagator(s) and d'Alembertian already carry large amounts of geometric information about their causal set. This geometric information is basis independent and also gauge invariant in the sense that it is relabeling invariant (which is analogue to diffeomorphism invariance). We provide numerical evidence that the associated spectral distance between causal sets can serve as a measure for the geometric similarity between causal sets.
A Brief Introduction to Temporality and Causality
Karimi, Kamran
2010-01-01
Causality is a non-obvious concept that is often considered to be related to temporality. In this paper we present a number of past and present approaches to the definition of temporality and causality from philosophical, physical, and computational points of view. We note that time is an important ingredient in many relationships and phenomena. The topic is then divided into the two main areas of temporal discovery, which is concerned with finding relations that are stretched over time, and causal discovery, where a claim is made as to the causal influence of certain events on others. We present a number of computational tools used for attempting to automatically discover temporal and causal relations in data.
Causality, Bell's theorem, and Ontic Definiteness
Henson, Joe
2011-01-01
Bell's theorem shows that the reasonable relativistic causal principle known as "local causality" is not compatible with the predictions of quantum mechanics. It is not possible maintain a satisfying causal principle of this type while dropping any of the better-known assumptions of Bell's theorem. However, another assumption of Bell's theorem is the use of classical logic. One part of this assumption is the principle of "ontic definiteness", that is, that it must in principle be possible to assign definite truth values to all propositions treated in the theory. Once the logical setting is clarified somewhat, it can be seen that rejecting this principle does not in any way undermine the type of causal principle used by Bell. Without ontic definiteness, the deterministic causal condition known as Einstein Locality succeeds in banning superluminal influence (including signalling) whilst allowing correlations that violate Bell's inequalities. Objections to altering logic, and the consequences for operational and...
Quantum-coherent mixtures of causal relations
MacLean, Jean-Philippe W; Spekkens, Robert W; Resch, Kevin J
2016-01-01
Understanding the causal influences that hold among the parts of a system is critical both to explaining that system's natural behaviour and to controlling it through targeted interventions. In a quantum world, understanding causal relations is equally important, but the set of possibilities is far richer. The two basic ways in which a pair of time-ordered quantum systems may be causally related are by a cause-effect mechanism or by a common cause acting on both. Here, we show that it is possible to have a coherent mixture of these two possibilities. We realize such a nonclassical causal relation in a quantum optics experiment and derive a set of criteria for witnessing the coherence based on a quantum version of Berkson's paradox. The interplay of causality and quantum theory lies at the heart of challenging foundational puzzles, such as Bell's theorem and the search for quantum gravity, but could also provide a resource for novel quantum technologies.
A Causal Alternative to Feynman's Propagator
Koksma, Jurjen F
2010-01-01
The Feynman propagator used in the conventional in-out formalism in quantum field theory is not a causal propagator as wave packets are propagated virtually instantaneously outside the causal region of the initial state. We formulate a causal in-out formalism in quantum field theory by making use of the Wheeler propagator, the time ordered commutator propagator, which is manifestly causal. Only free scalar field theories and their first quantization are considered. We identify the real Klein Gordon field itself as the wave function of a neutral spinless relativistic particle. Furthermore, we derive a probability density for our relativistic wave packet using the inner product between states that live on a suitably defined Hilbert space of real quantum fields. We show that the time evolution of our probability density is governed by the Wheeler propagator, such that it behaves causally too.
Quantum-coherent mixtures of causal relations
MacLean, Jean-Philippe W.; Ried, Katja; Spekkens, Robert W.; Resch, Kevin J.
2017-01-01
Understanding the causal influences that hold among parts of a system is critical both to explaining that system's natural behaviour and to controlling it through targeted interventions. In a quantum world, understanding causal relations is equally important, but the set of possibilities is far richer. The two basic ways in which a pair of time-ordered quantum systems may be causally related are by a cause-effect mechanism or by a common-cause acting on both. Here we show a coherent mixture of these two possibilities. We realize this nonclassical causal relation in a quantum optics experiment and derive a set of criteria for witnessing the coherence based on a quantum version of Berkson's effect, whereby two independent causes can become correlated on observation of their common effect. The interplay of causality and quantum theory lies at the heart of challenging foundational puzzles, including Bell's theorem and the search for quantum gravity. PMID:28485394
Causality Violation, Gravitational Shockwaves and UV Completion
Hollowood, Timothy J
2015-01-01
The effective actions describing the low-energy dynamics of QFTs involving gravity generically exhibit causality violations. These may take the form of superluminal propagation or Shapiro time advances and allow the construction of "time machines", i.e. spacetimes admitting closed non-spacelike curves. Here, we discuss critically whether such causality violations may be used as a criterion to identify unphysical effective actions or whether, and how, causality problems may be resolved by embedding the action in a fundamental, UV complete QFT. We study in detail the case of photon scattering in an Aichelburg-Sexl gravitational shockwave background and calculate the phase shifts in QED for all energies, demonstrating their smooth interpolation from the causality-violating effective action values at low-energy to their manifestly causal high-energy limits. At low energies, these phase shifts may be interpreted as backwards-in-time coordinate jumps as the photon encounters the shock wavefront, and we illustrate h...
Variational Bayesian Causal Connectivity Analysis for fMRI
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Martin eLuessi
2014-05-01
Full Text Available The ability to accurately estimate effective connectivity among brain regions from neuroimaging data could help answering many open questions in neuroscience. We propose a method which uses causality to obtain a measure of effective connectivity from fMRI data. The method uses a vector autoregressive model for the latent variables describing neuronal activity in combination with a linear observation model based on a convolution with a hemodynamic response function. Due to the employed modeling, it is possible to efficiently estimate all latent variables of the model using a variational Bayesian inference algorithm. The computational efficiency of the method enables us to apply it to large scale problems with high sampling rates and several hundred regions of interest. We use a comprehensive empirical evaluation with synthetic and real fMRI data to evaluate the performance of our method under various conditions.
Causal ubiquity in quantum physics a superluminal and local-causal physical ontology
Neelamkavil, Raphael
2014-01-01
A fixed highest criterial velocity (of light) in STR (special theory of relativity) is a convention for a layer of physical inquiry. QM (Quantum Mechanics) avoids action-at-a-distance using this concept, but accepts non-causality and action-at-a-distance in EPR (Einstein-Podolsky-Rosen-Paradox) entanglement experiments. Even in such allegedly non-causal processes, something exists processually in extension-motion, between the causal and the non-causal. If STR theoretically allows real-valued superluminal communication between EPR entangled particles, quantum processes become fully causal. That
Relton, Caroline L; Davey Smith, George
2012-01-01
The burgeoning interest in the field of epigenetics has precipitated the need to develop approaches to strengthen causal inference when considering the role of epigenetic mediators of environmental exposures on disease risk. Epigenetic markers, like any other molecular biomarker, are vulnerable to confounding and reverse causation. Here, we present a strategy, based on the well-established framework of Mendelian randomization, to interrogate the causal relationships between exposure, DNA methylation and outcome. The two-step approach first uses a genetic proxy for the exposure of interest to assess the causal relationship between exposure and methylation. A second step then utilizes a genetic proxy for DNA methylation to interrogate the causal relationship between DNA methylation and outcome. The rationale, origins, methodology, advantages and limitations of this novel strategy are presented. PMID:22422451
Stochastic processes inference theory
Rao, Malempati M
2014-01-01
This is the revised and enlarged 2nd edition of the authors’ original text, which was intended to be a modest complement to Grenander's fundamental memoir on stochastic processes and related inference theory. The present volume gives a substantial account of regression analysis, both for stochastic processes and measures, and includes recent material on Ridge regression with some unexpected applications, for example in econometrics. The first three chapters can be used for a quarter or semester graduate course on inference on stochastic processes. The remaining chapters provide more advanced material on stochastic analysis suitable for graduate seminars and discussions, leading to dissertation or research work. In general, the book will be of interest to researchers in probability theory, mathematical statistics and electrical and information theory.
Janardhan, Sujatha
2012-01-01
We present a short review of geometric and algebraic approach to causal cones and describe cone preserving transformations and their relationship with causal structure related to special and general theory of relativity. We describe Lie groups, especially matrix Lie groups, homogeneous and symmetric spaces and causal cones and certain implications of these concepts in special and general theory of relativity related to causal structure and topology of space-time. We compare and contrast the results on causal relations with those in the literature for general space-times and compare these relations with K-causal maps. We also describe causal orientations and their implications for space-time topology and discuss some more topologies on space-time which arise as an application of domain theory.
Causal systems categories: differences in novice and expert categorization of causal phenomena.
Rottman, Benjamin M; Gentner, Dedre; Goldwater, Micah B
2012-07-01
We investigated the understanding of causal systems categories--categories defined by common causal structure rather than by common domain content--among college students. We asked students who were either novices or experts in the physical sciences to sort descriptions of real-world phenomena that varied in their causal structure (e.g., negative feedback vs. causal chain) and in their content domain (e.g., economics vs. biology). Our hypothesis was that there would be a shift from domain-based sorting to causal sorting with increasing expertise in the relevant domains. This prediction was borne out: the novice groups sorted primarily by domain and the expert group sorted by causal category. These results suggest that science training facilitates insight about causal structures.
Biological causal links on physiological and evolutionary time scales.
Karmon, Amit; Pilpel, Yitzhak
2016-04-26
Correlation does not imply causation. If two variables, say A and B, are correlated, it could be because A causes B, or that B causes A, or because a third factor affects them both. We suggest that in many cases in biology, the causal link might be bi-directional: A causes B through a fast-acting physiological process, while B causes A through a slowly accumulating evolutionary process. Furthermore, many trained biologists tend to consistently focus at first on the fast-acting direction, and overlook the slower process in the opposite direction. We analyse several examples from modern biology that demonstrate this bias (codon usage optimality and gene expression, gene duplication and genetic dispensability, stem cell division and cancer risk, and the microbiome and host metabolism) and also discuss an example from linguistics. These examples demonstrate mutual effects between the fast physiological processes and the slow evolutionary ones. We believe that building awareness of inference biases among biologists who tend to prefer one causal direction over another could improve scientific reasoning.
Energy Technology Data Exchange (ETDEWEB)
KENNETH M. HANSON; JANE M. BOOKER
2000-09-08
The authors an uncertainty analysis of data taken using the Rossi technique, in which the horizontal oscilloscope sweep is driven sinusoidally in time ,while the vertical axis follows the signal amplitude. The analysis is done within a Bayesian framework. Complete inferences are obtained by tilting the Markov chain Monte Carlo technique, which produces random samples from the posterior probability distribution expressed in terms of the parameters.
Inferring Microbial Fitness Landscapes
2016-02-25
experiments on evolving microbial populations. Although these experiments have produced examples of remarkable phenomena – e.g. the emergence of mutator...what specific mutations, avian influenza viruses will adapt to novel human hosts; or how readily infectious bacteria will escape antibiotics or the...infer from data the determinants of microbial evolution with sufficient resolution that we can quantify 1. REPORT DATE (DD-MM-YYYY) 4. TITLE AND
Directory of Open Access Journals (Sweden)
Oliver Serang
Full Text Available Exact Bayesian inference can sometimes be performed efficiently for special cases where a function has commutative and associative symmetry of its inputs (called "causal independence". For this reason, it is desirable to exploit such symmetry on big data sets. Here we present a method to exploit a general form of this symmetry on probabilistic adder nodes by transforming those probabilistic adder nodes into a probabilistic convolution tree with which dynamic programming computes exact probabilities. A substantial speedup is demonstrated using an illustration example that can arise when identifying splice forms with bottom-up mass spectrometry-based proteomics. On this example, even state-of-the-art exact inference algorithms require a runtime more than exponential in the number of splice forms considered. By using the probabilistic convolution tree, we reduce the runtime to O(k log(k2 and the space to O(k log(k where k is the number of variables joined by an additive or cardinal operator. This approach, which can also be used with junction tree inference, is applicable to graphs with arbitrary dependency on counting variables or cardinalities and can be used on diverse problems and fields like forward error correcting codes, elemental decomposition, and spectral demixing. The approach also trivially generalizes to multiple dimensions.
Continuous Integrated Invariant Inference Project
National Aeronautics and Space Administration — The proposed project will develop a new technique for invariant inference and embed this and other current invariant inference and checking techniques in an...
Spread of entanglement and causality
Casini, Horacio; Mezei, Márk
2015-01-01
We investigate causality constraints on the time evolution of entanglement entropy after a global quench in relativistic theories. We first provide a general proof that the so-called tsunami velocity is bounded by the speed of light. We then generalize the free particle streaming model of arXiv:cond-mat/0503393 to general dimensions and to an arbitrary entanglement pattern of the initial state. In more than two spacetime dimensions the spread of entanglement in these models is highly sensitive to the initial entanglement pattern, but we are able to prove an upper bound on the normalized rate of growth of entanglement entropy, and hence the tsunami velocity. The bound is smaller than what one gets for quenches in holographic theories, which highlights the importance of interactions in the spread of entanglement in many-body systems. We propose an interacting model which we believe provides an upper bound on the spread of entanglement for interacting relativistic theories. In two spacetime dimensions with multi...
Spread of entanglement and causality
Casini, Horacio; Liu, Hong; Mezei, Márk
2016-07-01
We investigate causality constraints on the time evolution of entanglement entropy after a global quench in relativistic theories. We first provide a general proof that the so-called tsunami velocity is bounded by the speed of light. We then generalize the free particle streaming model of [1] to general dimensions and to an arbitrary entanglement pattern of the initial state. In more than two spacetime dimensions the spread of entanglement in these models is highly sensitive to the initial entanglement pattern, but we are able to prove an upper bound on the normalized rate of growth of entanglement entropy, and hence the tsunami velocity. The bound is smaller than what one gets for quenches in holographic theories, which highlights the importance of interactions in the spread of entanglement in many-body systems. We propose an interacting model which we believe provides an upper bound on the spread of entanglement for interacting relativistic theories. In two spacetime dimensions with multiple intervals, this model and its variations are able to reproduce intricate results exhibited by holographic theories for a significant part of the parameter space. For higher dimensions, the model bounds the tsunami velocity at the speed of light. Finally, we construct a geometric model for entanglement propagation based on a tensor network construction for global quenches.
Detecting Causality by Combined Use of Multiple Methods: Climate and Brain Examples.
Directory of Open Access Journals (Sweden)
Yoshito Hirata
Full Text Available Identifying causal relations from time series is the first step to understanding the behavior of complex systems. Although many methods have been proposed, few papers have applied multiple methods together to detect causal relations based on time series generated from coupled nonlinear systems with some unobserved parts. Here we propose the combined use of three methods and a majority vote to infer causality under such circumstances. Two of these methods are proposed here for the first time, and all of the three methods can be applied even if the underlying dynamics is nonlinear and there are hidden common causes. We test our methods with coupled logistic maps, coupled Rössler models, and coupled Lorenz models. In addition, we show from ice core data how the causal relations among the temperature, the CH4 level, and the CO2 level in the atmosphere changed in the last 800,000 years, a conclusion also supported by irregularly sampled data analysis. Moreover, these methods show how three regions of the brain interact with each other during the visually cued, two-choice arm reaching task. Especially, we demonstrate that this is due to bottom up influences at the beginning of the task, while there exist mutual influences between the posterior medial prefrontal cortex and the presupplementary motor area. Based on our results, we conclude that identifying causality with an appropriate ensemble of multiple methods ensures the validity of the obtained results more firmly.
Probabilistic Inferences in Bayesian Networks
Ding, Jianguo
2010-01-01
This chapter summarizes the popular inferences methods in Bayesian networks. The results demonstrates that the evidence can propagated across the Bayesian networks by any links, whatever it is forward or backward or intercausal style. The belief updating of Bayesian networks can be obtained by various available inference techniques. Theoretically, exact inferences in Bayesian networks is feasible and manageable. However, the computing and inference is NP-hard. That means, in applications, in ...
A Simple Test for Causality in Volatility
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Chia-Lin Chang
2017-03-01
Full Text Available An early development in testing for causality (technically, Granger non-causality in the conditional variance (or volatility associated with financial returns was the portmanteau statistic for non-causality in the variance of Cheng and Ng (1996. A subsequent development was the Lagrange Multiplier (LM test of non-causality in the conditional variance by Hafner and Herwartz (2006, who provided simulation results to show that their LM test was more powerful than the portmanteau statistic for sample sizes of 1000 and 4000 observations. While the LM test for causality proposed by Hafner and Herwartz (2006 is an interesting and useful development, it is nonetheless arbitrary. In particular, the specification on which the LM test is based does not rely on an underlying stochastic process, so the alternative hypothesis is also arbitrary, which can affect the power of the test. The purpose of the paper is to derive a simple test for causality in volatility that provides regularity conditions arising from the underlying stochastic process, namely a random coefficient autoregressive process, and a test for which the (quasi- maximum likelihood estimates have valid asymptotic properties under the null hypothesis of non-causality. The simple test is intuitively appealing as it is based on an underlying stochastic process, is sympathetic to Granger’s (1969, 1988 notion of time series predictability, is easy to implement, and has a regularity condition that is not available in the LM test.
Entanglement Entropy in Causal Set Theory
Sorkin, Rafael D
2016-01-01
Entanglement entropy is now widely accepted as having deep connections with quantum gravity. It is therefore desirable to understand it in the context of causal sets, especially since they provide in a natural manner the UV cutoff needed to render entanglement entropy finite. Defining entropy in a causal set is not straightforward because the type of canonical hypersurface-data on which definitions of entanglement typically rely is not available in a causal set. Instead, we will appeal to a more global expression given in arXiv:1205.2953 which, for a gaussian scalar field, expresses the entropy of a spacetime region in terms of the field's correlation function within that region. Carrying this formula over to the causal set, one obtains an entanglement entropy which is both finite and of a Lorentz invariant nature. Herein we evaluate this entropy for causal sets of 1+1 dimensions, and specifically for order-intervals ("causal diamonds") within the causal set, finding in the first instance an entropy that obey...
Mining Causality for Explanation Knowledge from Text
Institute of Scientific and Technical Information of China (English)
Chaveevan Pechsiri; Asanee Kawtrakul
2007-01-01
Mining causality is essential to provide a diagnosis. This research aims at extracting the causality existing within multiple sentences or EDUs (Elementary Discourse Unit). The research emphasizes the use of causality verbs because they make explicit in a certain way the consequent events of a cause, e.g., "Aphids suck the sap from rice leaves. Then leaves will shrink. Later, they will become yellow and dry.". A verb can also be the causal-verb link between cause and effect within EDU(s), e.g., "Aphids suck the sap from rice leaves causing leaves to be shrunk" ("causing" is equivalent to a causal-verb link in Thai). The research confronts two main problems: identifying the interesting causality events from documents and identifying their boundaries. Then, we propose mining on verbs by using two different machine learning techniques, Naive Bayes classifier and Support Vector Machine. The resulted mining rules will be used for the identification and the causality extraction of the multiple EDUs from text. Our multiple EDUs extraction shows 0.88 precision with 0.75 recall from Na'ive Bayes classifier and 0.89 precision with 0.76 recall from Support Vector Machine.
Causal localizations in relativistic quantum mechanics
Energy Technology Data Exchange (ETDEWEB)
Castrigiano, Domenico P. L., E-mail: castrig@ma.tum.de; Leiseifer, Andreas D., E-mail: andreas.leiseifer@tum.de [Fakultät für Mathematik, TU München, Boltzmannstraße 3, 85747 Garching (Germany)
2015-07-15
Causal localizations describe the position of quantum systems moving not faster than light. They are constructed for the systems with finite spinor dimension. At the center of interest are the massive relativistic systems. For every positive mass, there is the sequence of Dirac tensor-localizations, which provides a complete set of inequivalent irreducible causal localizations. They obey the principle of special relativity and are fully Poincaré covariant. The boosters are determined by the causal position operator and the other Poincaré generators. The localization with minimal spinor dimension is the Dirac localization. Thus, the Dirac equation is derived here as a mere consequence of the principle of causality. Moreover, the higher tensor-localizations, not known so far, follow from Dirac’s localization by a simple construction. The probability of localization for positive energy states results to be described by causal positive operator valued (PO-) localizations, which are the traces of the causal localizations on the subspaces of positive energy. These causal Poincaré covariant PO-localizations for every irreducible massive relativistic system were, all the more, not known before. They are shown to be separated. Hence, the positive energy systems can be localized within every open region by a suitable preparation as accurately as desired. Finally, the attempt is made to provide an interpretation of the PO-localization operators within the frame of conventional quantum mechanics attributing an important role to the negative energy states.
Diagnosis and causal explanation in psychiatry.
Maung, Hane Htut
2016-12-01
In clinical medicine, a diagnosis can offer an explanation of a patient's symptoms by specifying the pathology that is causing them. Diagnoses in psychiatry are also sometimes presented in clinical texts as if they pick out pathological processes that cause sets of symptoms. However, current evidence suggests the possibility that many diagnostic categories in psychiatry are highly causally heterogeneous. For example, major depressive disorder may not be associated with a single type of underlying pathological process, but with a range of different causal pathways, each involving complex interactions of various biological, psychological, and social factors. This paper explores the implications of causal heterogeneity for whether psychiatric diagnoses can be said to serve causal explanatory roles in clinical practice. I argue that while they may fall short of picking out a specific cause of the patient's symptoms, they can nonetheless supply different sorts of clinically relevant causal information. In particular, I suggest that some psychiatric diagnoses provide negative information that rules out certain causes, some provide approximate or disjunctive information about the range of possible causal processes, and some provide causal information about the relations between the symptoms themselves.
Multimodel inference and adaptive management
Rehme, S.E.; Powell, L.A.; Allen, C.R.
2011-01-01
Ecology is an inherently complex science coping with correlated variables, nonlinear interactions and multiple scales of pattern and process, making it difficult for experiments to result in clear, strong inference. Natural resource managers, policy makers, and stakeholders rely on science to provide timely and accurate management recommendations. However, the time necessary to untangle the complexities of interactions within ecosystems is often far greater than the time available to make management decisions. One method of coping with this problem is multimodel inference. Multimodel inference assesses uncertainty by calculating likelihoods among multiple competing hypotheses, but multimodel inference results are often equivocal. Despite this, there may be pressure for ecologists to provide management recommendations regardless of the strength of their study’s inference. We reviewed papers in the Journal of Wildlife Management (JWM) and the journal Conservation Biology (CB) to quantify the prevalence of multimodel inference approaches, the resulting inference (weak versus strong), and how authors dealt with the uncertainty. Thirty-eight percent and 14%, respectively, of articles in the JWM and CB used multimodel inference approaches. Strong inference was rarely observed, with only 7% of JWM and 20% of CB articles resulting in strong inference. We found the majority of weak inference papers in both journals (59%) gave specific management recommendations. Model selection uncertainty was ignored in most recommendations for management. We suggest that adaptive management is an ideal method to resolve uncertainty when research results in weak inference.
Pairwise measures of causal direction in the epidemiology of sleep problems and depression.
Directory of Open Access Journals (Sweden)
Tom Rosenström
Full Text Available Depressive mood is often preceded by sleep problems, suggesting that they increase the risk of depression. Sleep problems can also reflect prodromal symptom of depression, thus temporal precedence alone is insufficient to confirm causality. The authors applied recently introduced statistical causal-discovery algorithms that can estimate causality from cross-sectional samples in order to infer the direction of causality between the two sets of symptoms from a novel perspective. Two common-population samples were used; one from the Young Finns study (690 men and 997 women, average age 37.7 years, range 30-45, and another from the Wisconsin Longitudinal study (3101 men and 3539 women, average age 53.1 years, range 52-55. These included three depression questionnaires (two in Young Finns data and two sleep problem questionnaires. Three different causality estimates were constructed for each data set, tested in a benchmark data with a (practically known causality, and tested for assumption violations using simulated data. Causality algorithms performed well in the benchmark data and simulations, and a prediction was drawn for future empirical studies to confirm: for minor depression/dysphoria, sleep problems cause significantly more dysphoria than dysphoria causes sleep problems. The situation may change as depression becomes more severe, or more severe levels of symptoms are evaluated; also, artefacts due to severe depression being less well presented in the population data than minor depression may intervene the estimation for depression scales that emphasize severe symptoms. The findings are consistent with other emerging epidemiological and biological evidence.
Beigy, Hamid; Ahmad, Ashar; Masoudi-Nejad, Ali; Fröhlich, Holger
2017-01-01
Inferring the structure of molecular networks from time series protein or gene expression data provides valuable information about the complex biological processes of the cell. Causal network structure inference has been approached using different methods in the past. Most causal network inference techniques, such as Dynamic Bayesian Networks and ordinary differential equations, are limited by their computational complexity and thus make large scale inference infeasible. This is specifically true if a Bayesian framework is applied in order to deal with the unavoidable uncertainty about the correct model. We devise a novel Bayesian network reverse engineering approach using ordinary differential equations with the ability to include non-linearity. Besides modeling arbitrary, possibly combinatorial and time dependent perturbations with unknown targets, one of our main contributions is the use of Expectation Propagation, an algorithm for approximate Bayesian inference over large scale network structures in short computation time. We further explore the possibility of integrating prior knowledge into network inference. We evaluate the proposed model on DREAM4 and DREAM8 data and find it competitive against several state-of-the-art existing network inference methods. PMID:28166542
Scalar Field Green Functions on Causal Sets
Ahmed, S. Nomaan; Dowker, Fay; Surya, Sumati
2017-01-01
We examine the validity and scope of Johnston's models for scalar field retarded Green functions on causal sets in 2 and 4 dimensions. As in the continuum, the massive Green function can be obtained from the massless one, and hence the key task in causal set theory is to first identify the massless Green function. We propose that the 2-d model provides a Green function for the massive scalar field on causal sets approximated by any topologically trivial 2 dimensional spacetime. We explicitly ...
Dual Causality and the Autonomy of Biology.
Bock, Walter J
2017-03-01
Ernst Mayr's concept of dual causality in biology with the two forms of causes (proximate and ultimate) continues to provide an essential foundation for the philosophy of biology. They are equivalent to functional (=proximate) and evolutionary (=ultimate) causes with both required for full biological explanations. The natural sciences can be classified into nomological, historical nomological and historical dual causality, the last including only biology. Because evolutionary causality is unique to biology and must be included for all complete biological explanations, biology is autonomous from the physical sciences.
Intrinsic Universality of Causal Graph Dynamics
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Simon Martiel
2013-09-01
Full Text Available Causal graph dynamics are transformations over graphs that capture two important symmetries of physics, namely causality and homogeneity. They can be equivalently defined as continuous and translation invariant transformations or functions induced by a local rule applied simultaneously on every vertex of the graph. Intrinsic universality is the ability of an instance of a model to simulate every other instance of the model while preserving the structure of the computation at every step of the simulation. In this work we present the construction of a family of intrinsically universal instances of causal graphs dynamics, each instance being able to simulate a subset of instances.
Hubeny, V E; Hubeny, Veronika E.; Rangamani, Mukund
2002-01-01
We discuss the causal structure of pp-wave spacetimes using the ideal point construction outlined by Geroch, Kronheimer, and Penrose. This generalizes the recent work of Marolf and Ross, who considered similar issues for plane wave spacetimes. We address the question regarding the dimension of the causal boundary for certain specific pp-wave backgrounds. In particular, we demonstrate that the pp-wave spacetime which gives rise to the N = 2 sine-Gordon string world-sheet theory is geodesically complete and has a one-dimensional causal boundary.
Causality in 3D Massive Gravity Theories
Edelstein, Jose D; Kilicarslan, Ercan; Leoni, Matias; Tekin, Bayram
2016-01-01
We study the constraints coming from local causality requirement in various 2+1 dimensional dynamical theories of gravity. In Topologically Massive Gravity, with a single parity noninvariant massive degree of freedom, and in New Massive Gravity, with two massive spin-$2$ degrees of freedom, causality and unitarity are compatible with each other and they both require the Newton's constant to be negative. In their extensions, such as the Born-Infeld gravity and the minimal massive gravity the situation is similar and quite different from their higher dimensional counterparts, such as quadratic (e.g., Einstein-Gauss-Bonnet) or cubic theories, where causality and unitarity are in conflict.
Granger causality and contiguity between stochastic processes
Energy Technology Data Exchange (ETDEWEB)
Triacca, Umberto [Universita di L' Aquila, Roio Poggio, I-67040 L' Aquila (Italy)]. E-mail: triacca@ec.univaq.it
2007-03-05
Although according to many econometricians the definition of causality proposed by Granger differs from other definitions of causation in the philosophy of science, in this Letter we argue that it is not completely lacking in philosophical legitimacy. We attempt to shed new light on the nexus between Granger causality and the concept of contiguity. In particular, we prove that the existence of a Granger causal link between two stochastic processes requires that these be 'contiguous' or that there exist a chain of processes, one contiguous to the next, which link the two processes.
Causality and Time in Historical Institutionalism
DEFF Research Database (Denmark)
Mahoney, James; Mohamedali, Khairunnisa; Nguyen, Christoph
2016-01-01
This chapter explores the dual concern with causality and time in historical institutionalism using a graphical approach. The analysis focuses on three concepts that are central to this field: critical junctures, gradual change, and path dependence. The analysis makes explicit and formal the logic...... underlying studies that use these “causal-temporal” concepts. The chapter shows visually how causality and temporality are linked to one another in varying ways depending on the particular pattern of change. The chapter provides new tools for describing and understanding change in historical- institutional...
Directory of Open Access Journals (Sweden)
Octavio Martínez Betancur
2010-07-01
Full Text Available El cometido del presente trabajo es la lectura interpretativa con base en la propuesta de inferencia causal de Austin Bradford Hill, del documento Radiation-related leukemia in Hiroshima and Nagasaki, 1946-1964. I. Distribution, incidence and appearance time. El documento informado por el comité de las víctimas de la bomba atómica cumple con la totalidad de los nueve "criterios" propuesto por Hill, y entre las limitaciones se cuentan la presunciones de homogeneidad genética de los sujetos expuestos y linealidad de los efectos de las radiaciones en la leucemia, además del hecho de sólo considerar la edad como variable confusora. Por otra parte, el número de muertes por leucemia, patrón de oro de la sensibilidad y la especificidad del sistema de vigilancia del estudio de duración de la vida, fue 61 muertes por leucemia entre los supervivientes situados dentro de 1500 metros del epicentro de la explosión y 25 muertes en el grupo que recibió radiación estando entre 1501 y 10000 metros, lo que habla de posible subregistro de casos y de sobrediagnóstico por la sumatoria de criterios empleados. Los "criterios" de Hill no son reglas lógicas sino metodológicas, que ayudan en el proceso de decisión sobre la inferencia causal en epidemiología. Se apartan de la discusión de si las inferencias a partir de ellos se ajustan a la lógica inductiva o a la deductiva, y deben entenderse pragmáticamente como "inferencias de la mejor explicación" en el contexto de la abducción. La única conclusión permitida dentro del marco de la "inferencia de la mejor explicación", es que se tienen buenas razones para considerar seriamente la hipótesis que la asociación estadística que se estudia, es una relación causal.This paper presents an interpretive reading based on the proposed causal inference by Austin Bradford Hill; of the document "Radiation-related leukemia in Hiroshima and Nagasaki, 1946-1964. I. Distribution, incidence, and Appearance time
Directory of Open Access Journals (Sweden)
Juan Pablo Barreyro
2011-04-01
Full Text Available This study investigated the generation of emotional inferences during the reading and recall of narrative texts. Experiment 1 compared the fit of two simulations of text comprehension to the recall data. One simulation examined causal and referential inferences, while the other examined causal, referential and emotional inferences. We found that the simulation that involved emotional inferences provided a better fit to the human data than the other simulation. Experiment 2 tested whether emotional inferences are generated online by recording lexical decision times at pre-inference and inference locations. Lexical decision times were faster at the inference than the pre-inference locations. These findings suggest that emotional inferences play a role in the understanding of natural texts, and that they require the reader to establish connections between text segments.
Nanotechnology and statistical inference
Vesely, Sara; Vesely, Leonardo; Vesely, Alessandro
2017-08-01
We discuss some problems that arise when applying statistical inference to data with the aim of disclosing new func-tionalities. A predictive model analyzes the data taken from experiments on a specific material to assess the likelihood that another product, with similar structure and properties, will exhibit the same functionality. It doesn't have much predictive power if vari-ability occurs as a consequence of a specific, non-linear behavior. We exemplify our discussion on some experiments with biased dice.
Directory of Open Access Journals (Sweden)
Kevin H. Knuth
2012-06-01
Full Text Available We present a simple and clear foundation for finite inference that unites and significantly extends the approaches of Kolmogorov and Cox. Our approach is based on quantifying lattices of logical statements in a way that satisfies general lattice symmetries. With other applications such as measure theory in mind, our derivations assume minimal symmetries, relying on neither negation nor continuity nor differentiability. Each relevant symmetry corresponds to an axiom of quantification, and these axioms are used to derive a unique set of quantifying rules that form the familiar probability calculus. We also derive a unique quantification of divergence, entropy and information.
Nonparametric statistical inference
Gibbons, Jean Dickinson
2010-01-01
Overall, this remains a very fine book suitable for a graduate-level course in nonparametric statistics. I recommend it for all people interested in learning the basic ideas of nonparametric statistical inference.-Eugenia Stoimenova, Journal of Applied Statistics, June 2012… one of the best books available for a graduate (or advanced undergraduate) text for a theory course on nonparametric statistics. … a very well-written and organized book on nonparametric statistics, especially useful and recommended for teachers and graduate students.-Biometrics, 67, September 2011This excellently presente
DEFF Research Database (Denmark)
Andersen, Jesper; Lawall, Julia
2010-01-01
A key issue in maintaining Linux device drivers is the need to keep them up to date with respect to evolutions in Linux internal libraries. Currently, there is little tool support for performing and documenting such changes. In this paper we present a tool, spdiff, that identifies common changes...... developers can use it to extract an abstract representation of the set of changes that others have made. Our experiments on recent changes in Linux show that the inferred generic patches are more concise than the corresponding patches found in commits to the Linux source tree while being safe with respect...
Unveiling causal activity of complex networks
Williams-García, Rashid V.; Beggs, John M.; Ortiz, Gerardo
2017-07-01
We introduce a novel tool for analyzing complex network dynamics, allowing for cascades of causally-related events, which we call causal webs (c-webs), to be separated from other non-causally-related events. This tool shows that traditionally-conceived avalanches may contain mixtures of spatially-distinct but temporally-overlapping cascades of events, and dynamical disorder or noise. In contrast, c-webs separate these components, unveiling previously hidden features of the network and dynamics. We apply our method to mouse cortical data with resulting statistics which demonstrate for the first time that neuronal avalanches are not merely composed of causally-related events. The original version of this article was uploaded to the arXiv on March 17th, 2016 [1].
Risk and causality in newspaper reporting.
Boholm, Max
2009-11-01
The study addresses the textual representation of risk and causality in news media reporting. The analytical framework combines two theoretical perspectives: media frame analysis and the philosophy of causality. Empirical data derive from selected newspaper articles on risks in the Göta älv river valley in southwest Sweden from 1994 to 2007. News media content was coded and analyzed with respect to causal explanations of risk issues. At the level of individual articles, this study finds that the media provide simple causal explanations of risks such as water pollution, landslides, and flooding. Furthermore, these explanations are constructed, or framed, in various ways, the same risk being attributed to different causes in different articles. However, the study demonstrates that a fairly complex picture of risks in the media emerges when extensive material is analyzed systematically.
Causality Between Urban Concentration and Environmental Quality
Directory of Open Access Journals (Sweden)
Amin Pujiati
2015-08-01
Full Text Available Population is concentrated in urban areas can cause the external diseconomies on environment if it exceeds the carrying capacity of the space and the urban economy. Otherwise the quality of the environment is getting better, led to the concentration of population in urban areas are increasingly high. This study aims to analyze the relationship of causality between the urban concentration and environmental quality in urban agglomeration areas. The data used in the study of secondary data obtained from the Central Bureau of statistics and the City Government from 2000 to 2013. The analytical method used is the Granger causality and descriptive. Granger causality study results showed no pattern of reciprocal causality, between urban concentration and the quality of the environment, but there unidirectional relationship between the urban concentration and environmental quality. This means that increasing urban concentration led to decreased environmental quality.
A Causal Model for Diagnostic Reasoning
Institute of Scientific and Technical Information of China (English)
PENG Guoqiang; CHENG Hu
2000-01-01
Up to now, there have been many methods for knowledge representation and reasoning in causal networks, but few of them include the research on the coactions of nodes. In practice, ignoring these coactions may influence the accuracy of reasoning and even give rise to incorrect reasoning. In this paper, based on multilayer causal networks, the definitions on coaction nodes are given to construct a new causal network called Coaction Causal Network, which serves to construct a model of neural network for diagnosis followed by fuzzy reasoning, and then the activation rules are given and neural computing methods are used to finish the diagnostic reasoning. These methods are proved in theory and a method of computing the number of solutions for the diagnostic reasoning is given. Finally, the experiments and the conclusions are presented.
Causality and the Semantics of Provenance
Directory of Open Access Journals (Sweden)
James Cheney
2010-06-01
Full Text Available Provenance, or information about the sources, derivation, custody or history of data, has been studied recently in a number of contexts, including databases, scientific workflows and the Semantic Web. Many provenance mechanisms have been developed, motivated by informal notions such as influence, dependence, explanation and causality. However, there has been little study of whether these mechanisms formally satisfy appropriate policies or even how to formalize relevant motivating concepts such as causality. We contend that mathematical models of these concepts are needed to justify and compare provenance techniques. In this paper we review a theory of causality based on structural models that has been developed in artificial intelligence, and describe work in progress on using causality to give a semantics to provenance graphs.
The Gravity Dual of Boundary Causality
Engelhardt, Netta
2016-01-01
In gauge/gravity duality, points which are not causally related on the boundary cannot be causally related through the bulk; this is the statement of boundary causality. By the Gao-Wald theorem, the averaged null energy condition in the bulk is sufficient to ensure this property. Here we proceed in the converse direction: we derive a necessary as well as sufficient condition for the preservation of boundary causality under perturbative (quantum or stringy) corrections to the bulk. The condition that we find is a (background-dependent) constraint on the amount by which light cones can "open" over all null bulk geodesics. We show that this constraint is weaker than the averaged null energy condition.
The Scalar Curvature of a Causal Set
Benincasa, Dionigi M T
2010-01-01
A one parameter family of retarded linear operators on scalar fields on causal sets is introduced. When the causal set is well-approximated by 4 dimensional Minkowski spacetime, the operators are Lorentz invariant but nonlocal, are parametrised by the scale of the nonlocality and approximate the continuum scalar D'Alembertian, $\\Box$, when acting on fields that vary slowly on the nonlocality scale. The same operators can be applied to scalar fields on causal sets which are well-approximated by curved spacetimes in which case they approximate $\\Box - {{1/2}}R$ where $R$ is the Ricci scalar curvature. This can used to define an approximately local action functional for causal sets.
Vitalistic causality in young children's naive biology.
Inagaki, Kayoko; Hatano, Giyoo
2004-08-01
One of the key issues in conceptual development research concerns what kinds of causal devices young children use to understand the biological world. We review evidence that children predict and interpret biological phenomena, especially human bodily processes, on the basis of 'vitalistic causality'. That is, they assume that vital power or life force taken from food and water makes humans active, prevents them from being taken ill, and enables them to grow. These relationships are also extended readily to other animals and even to plants. Recent experimental results show that a majority of preschoolers tend to choose vitalistic explanations as most plausible. Vitalism, together with other forms of intermediate causality, constitute unique causal devices for naive biology as a core domain of thought.
Causales de ausencia de responsabilidad penal
Jaime Sandoval Fernández
2003-01-01
Este trabajo se ocupa de las causales de ausencia de responsabilidad penal, especialmente de aquellas que tienen efecto en el injusto. Como subtemas se delimita el concepto de responsabilidad penal y su ausencia. Se estudian las principales teorias a cerca de la relación tipicidad-antijuridicidad y su incidencia en el derecho penal colombiano. Por último contiene una propuesta acerca de cómo deberian agruparse las causales del arto 32 C. PlOO.
Causales de ausencia de responsabilidad penal
Directory of Open Access Journals (Sweden)
Jaime Sandoval Fernández
2003-01-01
Full Text Available Este trabajo se ocupa de las causales de ausencia de responsabilidad penal, especialmente de aquellas que tienen efecto en el injusto. Como subtemas se delimita el concepto de responsabilidad penal y su ausencia. Se estudian las principales teorias a cerca de la relación tipicidad-antijuridicidad y su incidencia en el derecho penal colombiano. Por último contiene una propuesta acerca de cómo deberian agruparse las causales del arto 32 C. PlOO.
Locally Causal Dynamical Triangulations in Two Dimensions
Loll, Renate
2015-01-01
We analyze the universal properties of a new two-dimensional quantum gravity model defined in terms of Locally Causal Dynamical Triangulations (LCDT). Measuring the Hausdorff and spectral dimensions of the dynamical geometrical ensemble, we find numerical evidence that the continuum limit of the model lies in a new universality class of two-dimensional quantum gravity theories, inequivalent to both Euclidean and Causal Dynamical Triangulations.
Illness causal beliefs in Turkish immigrants
Klimidis Steven; Minas Harry; Tuncer Can
2007-01-01
Abstract Background People hold a wide variety of beliefs concerning the causes of illness. Such beliefs vary across cultures and, among immigrants, may be influenced by many factors, including level of acculturation, gender, level of education, and experience of illness and treatment. This study examines illness causal beliefs in Turkish-immigrants in Australia. Methods Causal beliefs about somatic and mental illness were examined in a sample of 444 members of the Turkish population of Melbo...
Directory of Open Access Journals (Sweden)
Xudong Dai
2007-03-01
Full Text Available Uncovering pathways underlying drug-induced toxicity is a fundamental objective in the field of toxicogenomics. Developing mechanism-based toxicity biomarkers requires the identification of such novel pathways and the order of their sufficiency in causing a phenotypic response. Genome-wide RNA interference (RNAi phenotypic screening has emerged as an effective tool in unveiling the genes essential for specific cellular functions and biological activities. However, eliciting the relative contribution of and sufficiency relationships among the genes identified remains challenging. In the rodent, the most widely used animal model in preclinical studies, it is unrealistic to exhaustively examine all potential interactions by RNAi screening. Application of existing computational approaches to infer regulatory networks with biological outcomes in the rodent is limited by the requirements for a large number of targeted permutations. Therefore, we developed a two-step relay method that requires only one targeted perturbation for genome-wide de novo pathway discovery. Using expression profiles in response to small interfering RNAs (siRNAs against the gene for peroxisome proliferator-activated receptor alpha (Ppara, our method unveiled the potential causal sufficiency order network for liver hypertrophy in the rodent. The validity of the inferred 16 causal transcripts or 15 known genes for PPARalpha-induced liver hypertrophy is supported by their ability to predict non-PPARalpha-induced liver hypertrophy with 84% sensitivity and 76% specificity. Simulation shows that the probability of achieving such predictive accuracy without the inferred causal relationship is exceedingly small (p < 0.005. Five of the most sufficient causal genes have been previously disrupted in mouse models; the resulting phenotypic changes in the liver support the inferred causal roles in liver hypertrophy. Our results demonstrate the feasibility of defining pathways mediating drug
Statistical inferences in phylogeography
DEFF Research Database (Denmark)
Nielsen, Rasmus; Beaumont, Mark A
2009-01-01
In conventional phylogeographic studies, historical demographic processes are elucidated from the geographical distribution of individuals represented on an inferred gene tree. However, the interpretation of gene trees in this context can be difficult as the same demographic/geographical process ...... may also be challenged by computational problems or poor model choice. In this review, we will describe the development of statistical methods in phylogeographic analysis, and discuss some of the challenges facing these methods....... can randomly lead to multiple different genealogies. Likewise, the same gene trees can arise under different demographic models. This problem has led to the emergence of many statistical methods for making phylogeographic inferences. A popular phylogeographic approach based on nested clade analysis...... is challenged by the fact that a certain amount of the interpretation of the data is left to the subjective choices of the user, and it has been argued that the method performs poorly in simulation studies. More rigorous statistical methods based on coalescence theory have been developed. However, these methods...
Moment inference from tomograms
Day-Lewis, F. D.; Chen, Y.; Singha, K.
2007-01-01
Time-lapse geophysical tomography can provide valuable qualitative insights into hydrologic transport phenomena associated with aquifer dynamics, tracer experiments, and engineered remediation. Increasingly, tomograms are used to infer the spatial and/or temporal moments of solute plumes; these moments provide quantitative information about transport processes (e.g., advection, dispersion, and rate-limited mass transfer) and controlling parameters (e.g., permeability, dispersivity, and rate coefficients). The reliability of moments calculated from tomograms is, however, poorly understood because classic approaches to image appraisal (e.g., the model resolution matrix) are not directly applicable to moment inference. Here, we present a semi-analytical approach to construct a moment resolution matrix based on (1) the classic model resolution matrix and (2) image reconstruction from orthogonal moments. Numerical results for radar and electrical-resistivity imaging of solute plumes demonstrate that moment values calculated from tomograms depend strongly on plume location within the tomogram, survey geometry, regularization criteria, and measurement error. Copyright 2007 by the American Geophysical Union.
Causal Structures in Gauss-Bonnet gravity
Izumi, Keisuke
2014-01-01
We analyze causal structures in Gauss-Bonnet gravity. It is known that Gauss-Bonnet gravity potentially has superluminal propagation of gravitons due to its non-canonical kinetic terms. In a theory with superluminal modes, an analysis of causality based on null curves makes no sense, and thus, we need to analyse them in a different way. In this paper, using the method of the characteristics, we analyze the causal structure in Gauss-Bonnet gravity. We have the result that, on a Killing horizon, gravitons can propagate in the null direction tangent to the Killing horizon. Therefore, a Killing horizon can be a causal edge as in the case of general relativity, i.e. a Killing horizon is the "event horizon" in the sense of causality. We also analyze causal structures on dynamical solutions with $(D-2)$-dimensional maximal symmetry, including spherically symmetric and flat spaces. If the geometrical null energy condition, $R_{AB}N^AN^B \\ge 0$ for any null vector $N^A$, is satisfied, the radial velocity of gravitons ...
Sex differences in the inference and perception of causal relations within a video game
Young, Michael E.
2014-01-01
The learning of immediate causation within a dynamic environment was examined. Participants encountered seven decision points in which they needed to choose, which of three possible candidates was the cause of explosions in the environment. Each candidate was firing a weapon at random every few seconds, but only one of them produced an immediate effect. Some participants showed little learning, but most demonstrated increases in accuracy across time. On average, men showed higher accuracy and...
Eide, Eric R.; Showalter, Mark H.
2012-01-01
Professors Richard J. Murnane and John B. Willett set out to capitalize on recent developments in education data and methodology by attempting to answer the following questions: How can new methods and data be applied most effectively in educational and social science research? What kinds of research designs are most appropriate? What kinds of…
Editorial: Ingenious designs and causal inference in child psychology and psychiatry.
Green, Jonathan
2016-05-01
The embryology of behavior--This title of a book by the great developmental psychologist Arnold Gesell (Gesell, 1945) continues nicely to encapsulate for me a core endeavour in child psychology and psychiatry; in the use of scientific method to tease out causes and processes within developmental science and psychopathology. This edition of JCPP includes some tremendous examples of the increasing rigour and sophistication with which such questions are being addressed. Particularly encouraging for me, as primarily an interventionist, is the use of well-designed randomized controlled trials (RCTs) for that end.
A meta-frontier approach for causal inference in productivity analysis
DEFF Research Database (Denmark)
Henningsen, Arne; Mpeta, Daniel F.; Adem, Anwar S.;
(2012) and create a meta-frontier in order to estimate the effects of participation on the farms’ meta-technology ratio, their group technical efficiency, and their meta-technology technical efficiency. The empirical analysis uses a cross-sectional data set from sunflower farmers in Tanzania, where some...... of the farmers participate in contract farming while others do not. We find a significant selection bias, which justifies the use of the sample selection framework. Our preliminary results indicate that contract farming significantly increases the yield potential (meta-technology ratio) but lowers the group...... technical efficiency. As the first effect is slightly larger than the second, we find a small positive effect of contract farming on productivity (meta-technology technical efficiency). The positive effects on the yield potential and the (average) productivity can be (at least partly) explained...
A meta-frontier approach for causal inference in productivity analysis
DEFF Research Database (Denmark)
Henningsen, Arne; Mpeta, Daniel F.; Adem, Anwar S.
(2012) and create a meta-frontier in order to estimate the effects of participation on the farms’ meta-technology ratio, their group technical efficiency, and their meta-technology technical efficiency. The empirical analysis uses a cross-sectional data set from sunflower farmers in Tanzania, where some...... impact on efficiency and productivity is mostly overlooked. This study addresses this salient gap by combining the approaches suggested by BravoUreta, Greene, and Solís (Empirical Economics 43:55–72, 2012) and Rao, Brümmer, and Qaim (American Journal of Agricultural Economics 94:891–912, 2012). We first...... use the approach of Bravo-Ureta, Greene and Solís (2012) to estimate two separate production frontiers (one for contract farmers and one for non-contract farmers) that account for potential biases due to self-selection on both observed and unobserved variables. Then, we follow Rao, Brümmer and Qaim...
Work Intensity and Non-Completion of University: Longitudinal Approach and Causal Inference
Moulin, Stéphane; Doray, Pierre; Laplante, Benoît; Street, María Constanza
2013-01-01
Researchers focused upon the work-dropping out connection tend to show a U-shaped relationship between the likelihood of dropping out and the number of hours worked outside school, with a higher exit rate for both non-working students and for students whose working hours pass a critical threshold. Yet the data typically used by these researchers…
Eide, Eric R.; Showalter, Mark H.
2012-01-01
Professors Richard J. Murnane and John B. Willett set out to capitalize on recent developments in education data and methodology by attempting to answer the following questions: How can new methods and data be applied most effectively in educational and social science research? What kinds of research designs are most appropriate? What kinds of…
Kaplan, David
2010-01-01
In recent years, attention in the education community has focused on the need for evidenced-based research, particularly educational policies and interventions that rest on "scientifically based research". The emphasis on scientifically based research in education has led to a corresponding increase in studies designed to provide strong warrants…
Beckers, Tom; Miller, Ralph R.; De Houwer, Jan; Urushihara, Kouji
2006-01-01
Forward blocking is one of the best-documented phenomena in Pavlovian animal conditioning. According to contemporary associative learning theories, forward blocking arises directly from the hardwired basic learning rules that govern the acquisition or expression of associations. Contrary to this view, here the authors demonstrate that blocking in…
A meta-frontier approach for causal inference in productivity analysis
DEFF Research Database (Denmark)
Henningsen, Arne; Mpeta, Daniel F.; Adem, Anwar S.
use the approach of Bravo-Ureta, Greene and Solís (2012) to estimate two separate production frontiers (one for contract farmers and one for non-contract farmers) that account for potential biases due to self-selection on both observed and unobserved variables. Then, we follow Rao, Brümmer and Qaim...... by the contractor’s provision of (additional) extension service and seeds of high-yielding varieties to the contract farmers....
A framework for inferring predictive distributions of rhino poaching events through causal modelling
CSIR Research Space (South Africa)
Koen, H
2014-07-01
Full Text Available .L.M.Witteman, B. M. P. Aleman, and B. G. Taal, “How to elicit many probabilities,” in Proceedings of the Fifteenth Conference on Uncertainty in Artificial Intelligence. Morgan Kaufmann Publishers, 1999, pp. 647–654. [30] G. F. Cooper, E. Herskovits, and T...
Lewis, Sarah J.; Relton, Caroline; Zammit, Stanley; Smith, George Davey
2013-01-01
Background: The risk of childhood behavioural and psychiatric diseases could be substantially reduced if modifiable risk factors for these disorders were identified. The critical period for many of these exposures is likely to be in utero as this is the time when brain development is most rapid. However, due to confounding and other limitations of…
Causal Inferences and the Use of Force: A Critique of Force without War.
1980-05-01
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Real-world reasoning toward scalable, uncertain spatiotemporal, contextual and causal inference
Goertzel, Ben; Coelho, Lucio
2011-01-01
The general problem addressed in this book is a large and important one: how to usefully deal with huge storehouses of complex information about real-world situations. Every one of the major modes of interacting with such storehouses - querying, data mining, data analysis - is addressed by current technologies only in very limited and unsatisfactory ways. The impact of a solution to this problem would be huge and pervasive, as the domains of human pursuit to which such storehouses are acutely relevant is numerous and rapidly growing. Finally, we give a more detailed treatment of one potential
Inferring attitudes from mindwandering.
Critcher, Clayton R; Gilovich, Thomas
2010-09-01
Self-perception theory posits that people understand their own attitudes and preferences much as they understand others', by interpreting the meaning of their behavior in light of the context in which it occurs. Four studies tested whether people also rely on unobservable "behavior," their mindwandering, when making such inferences. It is proposed here that people rely on the content of their mindwandering to decide whether it reflects boredom with an ongoing task or a reverie's irresistible pull. Having the mind wander to positive events, to concurrent as opposed to past activities, and to many events rather than just one tends to be attributed to boredom and therefore leads to perceived dissatisfaction with an ongoing task. Participants appeared to rely spontaneously on the content of their wandering minds as a cue to their attitudes, but not when an alternative cause for their mindwandering was made salient.
Bayesian inference in geomagnetism
Backus, George E.
1988-01-01
The inverse problem in empirical geomagnetic modeling is investigated, with critical examination of recently published studies. Particular attention is given to the use of Bayesian inference (BI) to select the damping parameter lambda in the uniqueness portion of the inverse problem. The mathematical bases of BI and stochastic inversion are explored, with consideration of bound-softening problems and resolution in linear Gaussian BI. The problem of estimating the radial magnetic field B(r) at the earth core-mantle boundary from surface and satellite measurements is then analyzed in detail, with specific attention to the selection of lambda in the studies of Gubbins (1983) and Gubbins and Bloxham (1985). It is argued that the selection method is inappropriate and leads to lambda values much larger than those that would result if a reasonable bound on the heat flow at the CMB were assumed.
Inferring the eccentricity distribution
Hogg, David W; Bovy, Jo
2010-01-01
Standard maximum-likelihood estimators for binary-star and exoplanet eccentricities are biased high, in the sense that the estimated eccentricity tends to be larger than the true eccentricity. As with most non-trivial observables, a simple histogram of estimated eccentricities is not a good estimate of the true eccentricity distribution. Here we develop and test a hierarchical probabilistic method for performing the relevant meta-analysis, that is, inferring the true eccentricity distribution, taking as input the likelihood functions for the individual-star eccentricities, or samplings of the posterior probability distributions for the eccentricities (under a given, uninformative prior). The method is a simple implementation of a hierarchical Bayesian model; it can also be seen as a kind of heteroscedastic deconvolution. It can be applied to any quantity measured with finite precision--other orbital parameters, or indeed any astronomical measurements of any kind, including magnitudes, parallaxes, or photometr...