Particle identification using artificial neural networks at BESIII

International Nuclear Information System (INIS)

Qin Gang; Lv Junguang; Bian Jianming; Chinese Academy of Sciences, Beijing

2008-01-01

A multilayered perceptrons' neural network technique has been applied in the particle identification at BESIII. The networks are trained in each sub-detector level. The NN output of sub-detectors can be sent to a sequential network or be constructed as PDFs for a likelihood. Good muon-ID, electron-ID and hadron-ID are obtained from the networks by using the simulated Monte Carlo samples. (authors)

Transient identification system with noising data and 'don't know' response; Sistema de identificacao de transientes com inclusao de ruidos e indicacao de eventos desconhecidos

Energy Technology Data Exchange (ETDEWEB)

Mol, Antonio C. de A. [Instituto de Engenharia Nuclear (IEN), Rio de Janeiro, RJ (Brazil). Div. de Confiabilidade Humana; Martinez, Aquilino S.; Schirru, Roberto [Universidade Federal, Rio de Janeiro, RJ (Brazil). Coordenacao dos Programas de Pos-graduacao de Engenharia. Programa de Engenharia Nuclear

2002-07-01

In the last years, many different approaches based on neural network (NN) has been proposed for transient identification in nuclear power plants (NPP). Some of them focus the dynamic identification using recurrent neural networks however, they are not able to deal with unrecognized transients. Other kind of solution uses competitive learning in order to allow the 'don't know' response. In this case dynamic, dynamic features are not well represented. This work presents a new approach for neural network based transient identification which allows either dynamic identification and 'don't know'response. Such approach uses two multilayer neural networks trained with backpropagation algorithm. The first one is responsible for the dynamic identification. This NN uses, a short set (in a movable time window) of recent measurements of each variable avoiding the necessity of using starting events. The other one is used to validate the instantaneous identification (from the first net) through the validation of each variable. This net is responsible for allowing the system to provide 'don't know' response. In order to validate the method a NPP transient identification problem comprising 15 postulated accidents, simulated for a pressurized water reactor, was proposed in the validation process it has been considered noising data in other to evaluate the method robustness. Obtained results reveal the ability of the method in dealing with both dynamic identification of transients and correct 'don't know' response. In order to validate the method, a NPP transient identification problem comprising 15 postulated accidents simulated for a pressurized water reactor, was proposed in the validation process it has been considered noising data in order to evaluate the method robustness. Obtained results reveal the ability of the method in dealing with both dynamic identification of transients and correct 'don't know

A lithology identification method for continental shale oil reservoir based on BP neural network

Science.gov (United States)

Han, Luo; Fuqiang, Lai; Zheng, Dong; Weixu, Xia

2018-06-01

The Dongying Depression and Jiyang Depression of the Bohai Bay Basin consist of continental sedimentary facies with a variable sedimentary environment and the shale layer system has a variety of lithologies and strong heterogeneity. It is difficult to accurately identify the lithologies with traditional lithology identification methods. The back propagation (BP) neural network was used to predict the lithology of continental shale oil reservoirs. Based on the rock slice identification, x-ray diffraction bulk rock mineral analysis, scanning electron microscope analysis, and the data of well logging and logging, the lithology was divided with carbonate, clay and felsic as end-member minerals. According to the core-electrical relationship, the frequency histogram was then used to calculate the logging response range of each lithology. The lithology-sensitive curves selected from 23 logging curves (GR, AC, CNL, DEN, etc) were chosen as the input variables. Finally, the BP neural network training model was established to predict the lithology. The lithology in the study area can be divided into four types: mudstone, lime mudstone, lime oil-mudstone, and lime argillaceous oil-shale. The logging responses of lithology were complicated and characterized by the low values of four indicators and medium values of two indicators. By comparing the number of hidden nodes and the number of training times, we found that the number of 15 hidden nodes and 1000 times of training yielded the best training results. The optimal neural network training model was established based on the above results. The lithology prediction results of BP neural network of well XX-1 showed that the accuracy rate was over 80%, indicating that the method was suitable for lithology identification of continental shale stratigraphy. The study provided the basis for the reservoir quality and oily evaluation of continental shale reservoirs and was of great significance to shale oil and gas exploration.

Identification of PEG-induced water stress responsive transcripts using co-expression network in Eucalyptus grandis.

Science.gov (United States)

Ghosh Dasgupta, Modhumita; Dharanishanthi, Veeramuthu

2017-09-05

Ecophysiological studies in Eucalyptus have shown that water is the principal factor limiting stem growth. Effect of water deficit conditions on physiological and biochemical parameters has been extensively reported in Eucalyptus. The present study was conducted to identify major polyethylene glycol induced water stress responsive transcripts in Eucalyptus grandis using gene co-expression network. A customized array representing 3359 water stress responsive genes was designed to document their expression in leaves of E. grandis cuttings subjected to -0.225MPa of PEG treatment. The differentially expressed transcripts were documented and significantly co-expressed transcripts were used for construction of network. The co-expression network was constructed with 915 nodes and 3454 edges with degree ranging from 2 to 45. Ninety four GO categories and 117 functional pathways were identified in the network. MCODE analysis generated 27 modules and module 6 with 479 nodes and 1005 edges was identified as the biologically relevant network. The major water responsive transcripts represented in the module included dehydrin, osmotin, LEA protein, expansin, arabinogalactans, heat shock proteins, major facilitator proteins, ARM repeat proteins, raffinose synthase, tonoplast intrinsic protein and transcription factors like DREB2A, ARF9, AGL24, UNE12, WLIM1 and MYB66, MYB70, MYB 55, MYB 16 and MYB 103. The coordinated analysis of gene expression patterns and coexpression networks developed in this study identified an array of transcripts that may regulate PEG induced water stress responses in E. grandis. Copyright © 2017 Elsevier B.V. All rights reserved.

Neural network based electron identification in the ZEUS calorimeter

International Nuclear Information System (INIS)

Abramowicz, H.; Caldwell, A.; Sinkus, R.

1995-01-01

We present an electron identification algorithm based on a neural network approach applied to the ZEUS uranium calorimeter. The study is motivated by the need to select deep inelastic, neutral current, electron proton interactions characterized by the presence of a scattered electron in the final state. The performance of the algorithm is compared to an electron identification method based on a classical probabilistic approach. By means of a principle component analysis the improvement in the performance is traced back to the number of variables used in the neural network approach. (orig.)

Optimization-based topology identification of complex networks

International Nuclear Information System (INIS)

Tang Sheng-Xue; Chen Li; He Yi-Gang

2011-01-01

In many cases, the topological structures of a complex network are unknown or uncertain, and it is of significance to identify the exact topological structure. An optimization-based method of identifying the topological structure of a complex network is proposed in this paper. Identification of the exact network topological structure is converted into a minimal optimization problem by using the estimated network. Then, an improved quantum-behaved particle swarm optimization algorithm is used to solve the optimization problem. Compared with the previous adaptive synchronization-based method, the proposed method is simple and effective and is particularly valid to identify the topological structure of synchronization complex networks. In some cases where the states of a complex network are only partially observable, the exact topological structure of a network can also be identified by using the proposed method. Finally, numerical simulations are provided to show the effectiveness of the proposed method. (general)

Identification of important nodes in directed biological networks: a network motif approach.

Directory of Open Access Journals (Sweden)

Pei Wang

Full Text Available Identification of important nodes in complex networks has attracted an increasing attention over the last decade. Various measures have been proposed to characterize the importance of nodes in complex networks, such as the degree, betweenness and PageRank. Different measures consider different aspects of complex networks. Although there are numerous results reported on undirected complex networks, few results have been reported on directed biological networks. Based on network motifs and principal component analysis (PCA, this paper aims at introducing a new measure to characterize node importance in directed biological networks. Investigations on five real-world biological networks indicate that the proposed method can robustly identify actually important nodes in different networks, such as finding command interneurons, global regulators and non-hub but evolutionary conserved actually important nodes in biological networks. Receiver Operating Characteristic (ROC curves for the five networks indicate remarkable prediction accuracy of the proposed measure. The proposed index provides an alternative complex network metric. Potential implications of the related investigations include identifying network control and regulation targets, biological networks modeling and analysis, as well as networked medicine.

Learning Data Set Influence on Identification Accuracy of Gas Turbine Neural Network Model

Science.gov (United States)

Kuznetsov, A. V.; Makaryants, G. M.

2018-01-01

There are many gas turbine engine identification researches via dynamic neural network models. It should minimize errors between model and real object during identification process. Questions about training data set processing of neural networks are usually missed. This article presents a study about influence of data set type on gas turbine neural network model accuracy. The identification object is thermodynamic model of micro gas turbine engine. The thermodynamic model input signal is the fuel consumption and output signal is the engine rotor rotation frequency. Four types input signals was used for creating training and testing data sets of dynamic neural network models - step, fast, slow and mixed. Four dynamic neural networks were created based on these types of training data sets. Each neural network was tested via four types test data sets. In the result 16 transition processes from four neural networks and four test data sets from analogous solving results of thermodynamic model were compared. The errors comparison was made between all neural network errors in each test data set. In the comparison result it was shown error value ranges of each test data set. It is shown that error values ranges is small therefore the influence of data set types on identification accuracy is low.

Reverse engineering biological networks :applications in immune responses to bio-toxins.

Energy Technology Data Exchange (ETDEWEB)

Martino, Anthony A.; Sinclair, Michael B.; Davidson, George S.; Haaland, David Michael; Timlin, Jerilyn Ann; Thomas, Edward Victor; Slepoy, Alexander; Zhang, Zhaoduo; May, Elebeoba Eni; Martin, Shawn Bryan; Faulon, Jean-Loup Michel

2005-12-01

Our aim is to determine the network of events, or the regulatory network, that defines an immune response to a bio-toxin. As a model system, we are studying T cell regulatory network triggered through tyrosine kinase receptor activation using a combination of pathway stimulation and time-series microarray experiments. Our approach is composed of five steps (1) microarray experiments and data error analysis, (2) data clustering, (3) data smoothing and discretization, (4) network reverse engineering, and (5) network dynamics analysis and fingerprint identification. The technological outcome of this study is a suite of experimental protocols and computational tools that reverse engineer regulatory networks provided gene expression data. The practical biological outcome of this work is an immune response fingerprint in terms of gene expression levels. Inferring regulatory networks from microarray data is a new field of investigation that is no more than five years old. To the best of our knowledge, this work is the first attempt that integrates experiments, error analyses, data clustering, inference, and network analysis to solve a practical problem. Our systematic approach of counting, enumeration, and sampling networks matching experimental data is new to the field of network reverse engineering. The resulting mathematical analyses and computational tools lead to new results on their own and should be useful to others who analyze and infer networks.

Feature-Augmented Neural Networks for Patient Note De-identification

OpenAIRE

Lee, Ji Young; Dernoncourt, Franck; Uzuner, Ozlem; Szolovits, Peter

2016-01-01

Patient notes contain a wealth of information of potentially great interest to medical investigators. However, to protect patients' privacy, Protected Health Information (PHI) must be removed from the patient notes before they can be legally released, a process known as patient note de-identification. The main objective for a de-identification system is to have the highest possible recall. Recently, the first neural-network-based de-identification system has been proposed, yielding state-of-t...

Distribution network fault section identification and fault location using artificial neural network

DEFF Research Database (Denmark)

Dashtdar, Masoud; Dashti, Rahman; Shaker, Hamid Reza

2018-01-01

In this paper, a method for fault location in power distribution network is presented. The proposed method uses artificial neural network. In order to train the neural network, a series of specific characteristic are extracted from the recorded fault signals in relay. These characteristics...... components of the sequences as well as three-phase signals could be obtained using statistics to extract the hidden features inside them and present them separately to train the neural network. Also, since the obtained inputs for the training of the neural network strongly depend on the fault angle, fault...... resistance, and fault location, the training data should be selected such that these differences are properly presented so that the neural network does not face any issues for identification. Therefore, selecting the signal processing function, data spectrum and subsequently, statistical parameters...

Plant Species Identification by Bi-channel Deep Convolutional Networks

Science.gov (United States)

He, Guiqing; Xia, Zhaoqiang; Zhang, Qiqi; Zhang, Haixi; Fan, Jianping

2018-04-01

Plant species identification achieves much attention recently as it has potential application in the environmental protection and human life. Although deep learning techniques can be directly applied for plant species identification, it still needs to be designed for this specific task to obtain the state-of-art performance. In this paper, a bi-channel deep learning framework is developed for identifying plant species. In the framework, two different sub-networks are fine-tuned over their pretrained models respectively. And then a stacking layer is used to fuse the output of two different sub-networks. We construct a plant dataset of Orchidaceae family for algorithm evaluation. Our experimental results have demonstrated that our bi-channel deep network can achieve very competitive performance on accuracy rates compared to the existing deep learning algorithm.

Two-component network model in voice identification technologies

Directory of Open Access Journals (Sweden)

Edita K. Kuular

2018-03-01

Full Text Available Among the most important parameters of biometric systems with voice modalities that determine their effectiveness, along with reliability and noise immunity, a speed of identification and verification of a person has been accentuated. This parameter is especially sensitive while processing large-scale voice databases in real time regime. Many research studies in this area are aimed at developing new and improving existing algorithms for presentation and processing voice records to ensure high performance of voice biometric systems. Here, it seems promising to apply a modern approach, which is based on complex network platform for solving complex massive problems with a large number of elements and taking into account their interrelationships. Thus, there are known some works which while solving problems of analysis and recognition of faces from photographs, transform images into complex networks for their subsequent processing by standard techniques. One of the first applications of complex networks to sound series (musical and speech analysis are description of frequency characteristics by constructing network models - converting the series into networks. On the network ontology platform a previously proposed technique of audio information representation aimed on its automatic analysis and speaker recognition has been developed. This implies converting information into the form of associative semantic (cognitive network structure with amplitude and frequency components both. Two speaker exemplars have been recorded and transformed into pertinent networks with consequent comparison of their topological metrics. The set of topological metrics for each of network models (amplitude and frequency one is a vector, and together  those combine a matrix, as a digital "network" voiceprint. The proposed network approach, with its sensitivity to personal conditions-physiological, psychological, emotional, might be useful not only for person identification

Distribution network topology identification based on synchrophasor

Directory of Open Access Journals (Sweden)

Stefania Conti

2018-03-01

Full Text Available A distribution system upgrade moving towards Smart Grid implementation is necessary to face the proliferation of distributed generators and electric vehicles, in order to satisfy the increasing demand for high quality, efficient, secure, reliable energy supply. This perspective requires taking into account system vulnerability to cyber attacks. An effective attack could destroy stored information about network structure, historical data and so on. Countermeasures and network applications could be made impracticable since most of them are based on the knowledge of network topology. Usually, the location of each link between nodes in a network is known. Therefore, the methods used for topology identification determine if a link is open or closed. When no information on the location of the network links is available, these methods become totally unfeasible. This paper presents a method to identify the network topology using only nodal measures obtained by means of phasor measurement units.

Rotor Resistance Online Identification of Vector Controlled Induction Motor Based on Neural Network

Directory of Open Access Journals (Sweden)

Bo Fan

2014-01-01

Full Text Available Rotor resistance identification has been well recognized as one of the most critical factors affecting the theoretical study and applications of AC motor’s control for high performance variable frequency speed adjustment. This paper proposes a novel model for rotor resistance parameters identification based on Elman neural networks. Elman recurrent neural network is capable of performing nonlinear function approximation and possesses the ability of time-variable characteristic adaptation. Those influencing factors of specified parameter are analyzed, respectively, and various work states are covered to ensure the completeness of the training samples. Through signal preprocessing on samples and training dataset, different input parameters identifications with one network are compared and analyzed. The trained Elman neural network, applied in the identification model, is able to efficiently predict the rotor resistance in high accuracy. The simulation and experimental results show that the proposed method owns extensive adaptability and performs very well in its application to vector controlled induction motor. This identification method is able to enhance the performance of induction motor’s variable-frequency speed regulation.

A Gamma Memory Neural Network for System Identification

Science.gov (United States)

Motter, Mark A.; Principe, Jose C.

1992-01-01

A gamma neural network topology is investigated for a system identification application. A discrete gamma memory structure is used in the input layer, providing delayed values of both the control inputs and the network output to the input layer. The discrete gamma memory structure implements a tapped dispersive delay line, with the amount of dispersion regulated by a single, adaptable parameter. The network is trained using static back propagation, but captures significant features of the system dynamics. The system dynamics identified with the network are the Mach number dynamics of the 16 Foot Transonic Tunnel at NASA Langley Research Center, Hampton, Virginia. The training data spans an operating range of Mach numbers from 0.4 to 1.3.

Identification of Complex Dynamical Systems with Neural Networks (2/2)

CERN Multimedia

CERN. Geneva

2016-01-01

The identification and analysis of high dimensional nonlinear systems is obviously a challenging task. Neural networks have been proven to be universal approximators but this still leaves the identification task a hard one. To do it efficiently, we have to violate some of the rules of classical regression theory. Furthermore we should focus on the interpretation of the resulting model to overcome its black box character. First, we will discuss function approximation with 3 layer feedforward neural networks up to new developments in deep neural networks and deep learning. These nets are not only of interest in connection with image analysis but are a center point of the current artificial intelligence developments. Second, we will focus on the analysis of complex dynamical system in the form of state space models realized as recurrent neural networks. After the introduction of small open dynamical systems we will study dynamical systems on manifolds. Here manifold and dynamics have to be identified in parall...

Identification of Complex Dynamical Systems with Neural Networks (1/2)

CERN Multimedia

CERN. Geneva

2016-01-01

The identification and analysis of high dimensional nonlinear systems is obviously a challenging task. Neural networks have been proven to be universal approximators but this still leaves the identification task a hard one. To do it efficiently, we have to violate some of the rules of classical regression theory. Furthermore we should focus on the interpretation of the resulting model to overcome its black box character. First, we will discuss function approximation with 3 layer feedforward neural networks up to new developments in deep neural networks and deep learning. These nets are not only of interest in connection with image analysis but are a center point of the current artificial intelligence developments. Second, we will focus on the analysis of complex dynamical system in the form of state space models realized as recurrent neural networks. After the introduction of small open dynamical systems we will study dynamical systems on manifolds. Here manifold and dynamics have to be identified in parall...

Identification of control targets in Boolean molecular network models via computational algebra.

Science.gov (United States)

Murrugarra, David; Veliz-Cuba, Alan; Aguilar, Boris; Laubenbacher, Reinhard

2016-09-23

Many problems in biomedicine and other areas of the life sciences can be characterized as control problems, with the goal of finding strategies to change a disease or otherwise undesirable state of a biological system into another, more desirable, state through an intervention, such as a drug or other therapeutic treatment. The identification of such strategies is typically based on a mathematical model of the process to be altered through targeted control inputs. This paper focuses on processes at the molecular level that determine the state of an individual cell, involving signaling or gene regulation. The mathematical model type considered is that of Boolean networks. The potential control targets can be represented by a set of nodes and edges that can be manipulated to produce a desired effect on the system. This paper presents a method for the identification of potential intervention targets in Boolean molecular network models using algebraic techniques. The approach exploits an algebraic representation of Boolean networks to encode the control candidates in the network wiring diagram as the solutions of a system of polynomials equations, and then uses computational algebra techniques to find such controllers. The control methods in this paper are validated through the identification of combinatorial interventions in the signaling pathways of previously reported control targets in two well studied systems, a p53-mdm2 network and a blood T cell lymphocyte granular leukemia survival signaling network. Supplementary data is available online and our code in Macaulay2 and Matlab are available via http://www.ms.uky.edu/~dmu228/ControlAlg . This paper presents a novel method for the identification of intervention targets in Boolean network models. The results in this paper show that the proposed methods are useful and efficient for moderately large networks.

NNSYSID and NNCTRL Tools for system identification and control with neural networks

DEFF Research Database (Denmark)

Nørgaard, Magnus; Ravn, Ole; Poulsen, Niels Kjølstad

2001-01-01

choose among several designs such as direct inverse control, internal model control, nonlinear feedforward, feedback linearisation, optimal control, gain scheduling based on instantaneous linearisation of neural network models and nonlinear model predictive control. This article gives an overview......Two toolsets for use with MATLAB have been developed: the neural network based system identification toolbox (NNSYSID) and the neural network based control system design toolkit (NNCTRL). The NNSYSID toolbox has been designed to assist identification of nonlinear dynamic systems. It contains...... a number of nonlinear model structures based on neural networks, effective training algorithms and tools for model validation and model structure selection. The NNCTRL toolkit is an add-on to NNSYSID and provides tools for design and simulation of control systems based on neural networks. The user can...

NNSYSID and NNCTRL Tools for system identification and control with neural networks

DEFF Research Database (Denmark)

Nørgaard, Magnus; Ravn, Ole; Poulsen, Niels Kjølstad

2001-01-01

a number of nonlinear model structures based on neural networks, effective training algorithms and tools for model validation and model structure selection. The NNCTRL toolkit is an add-on to NNSYSID and provides tools for design and simulation of control systems based on neural networks. The user can...... choose among several designs such as direct inverse control, internal model control, nonlinear feedforward, feedback linearisation, optimal control, gain scheduling based on instantaneous linearisation of neural network models and nonlinear model predictive control. This article gives an overview......Two toolsets for use with MATLAB have been developed: the neural network based system identification toolbox (NNSYSID) and the neural network based control system design toolkit (NNCTRL). The NNSYSID toolbox has been designed to assist identification of nonlinear dynamic systems. It contains...

Identification of Conserved Moieties in Metabolic Networks by Graph Theoretical Analysis of Atom Transition Networks

Science.gov (United States)

Haraldsdóttir, Hulda S.; Fleming, Ronan M. T.

2016-01-01

Conserved moieties are groups of atoms that remain intact in all reactions of a metabolic network. Identification of conserved moieties gives insight into the structure and function of metabolic networks and facilitates metabolic modelling. All moiety conservation relations can be represented as nonnegative integer vectors in the left null space of the stoichiometric matrix corresponding to a biochemical network. Algorithms exist to compute such vectors based only on reaction stoichiometry but their computational complexity has limited their application to relatively small metabolic networks. Moreover, the vectors returned by existing algorithms do not, in general, represent conservation of a specific moiety with a defined atomic structure. Here, we show that identification of conserved moieties requires data on reaction atom mappings in addition to stoichiometry. We present a novel method to identify conserved moieties in metabolic networks by graph theoretical analysis of their underlying atom transition networks. Our method returns the exact group of atoms belonging to each conserved moiety as well as the corresponding vector in the left null space of the stoichiometric matrix. It can be implemented as a pipeline of polynomial time algorithms. Our implementation completes in under five minutes on a metabolic network with more than 4,000 mass balanced reactions. The scalability of the method enables extension of existing applications for moiety conservation relations to genome-scale metabolic networks. We also give examples of new applications made possible by elucidating the atomic structure of conserved moieties. PMID:27870845

Data identification for improving gene network inference using computational algebra.

Science.gov (United States)

Dimitrova, Elena; Stigler, Brandilyn

2014-11-01

Identification of models of gene regulatory networks is sensitive to the amount of data used as input. Considering the substantial costs in conducting experiments, it is of value to have an estimate of the amount of data required to infer the network structure. To minimize wasted resources, it is also beneficial to know which data are necessary to identify the network. Knowledge of the data and knowledge of the terms in polynomial models are often required a priori in model identification. In applications, it is unlikely that the structure of a polynomial model will be known, which may force data sets to be unnecessarily large in order to identify a model. Furthermore, none of the known results provides any strategy for constructing data sets to uniquely identify a model. We provide a specialization of an existing criterion for deciding when a set of data points identifies a minimal polynomial model when its monomial terms have been specified. Then, we relax the requirement of the knowledge of the monomials and present results for model identification given only the data. Finally, we present a method for constructing data sets that identify minimal polynomial models.

Recurrent neural network for non-smooth convex optimization problems with application to the identification of genetic regulatory networks.

Science.gov (United States)

Cheng, Long; Hou, Zeng-Guang; Lin, Yingzi; Tan, Min; Zhang, Wenjun Chris; Wu, Fang-Xiang

2011-05-01

A recurrent neural network is proposed for solving the non-smooth convex optimization problem with the convex inequality and linear equality constraints. Since the objective function and inequality constraints may not be smooth, the Clarke's generalized gradients of the objective function and inequality constraints are employed to describe the dynamics of the proposed neural network. It is proved that the equilibrium point set of the proposed neural network is equivalent to the optimal solution of the original optimization problem by using the Lagrangian saddle-point theorem. Under weak conditions, the proposed neural network is proved to be stable, and the state of the neural network is convergent to one of its equilibrium points. Compared with the existing neural network models for non-smooth optimization problems, the proposed neural network can deal with a larger class of constraints and is not based on the penalty method. Finally, the proposed neural network is used to solve the identification problem of genetic regulatory networks, which can be transformed into a non-smooth convex optimization problem. The simulation results show the satisfactory identification accuracy, which demonstrates the effectiveness and efficiency of the proposed approach.

FUZZY NEURAL NETWORK FOR OBJECT IDENTIFICATION ON INTEGRATED CIRCUIT LAYOUTS

Directory of Open Access Journals (Sweden)

A. A. Doudkin

2015-01-01

Full Text Available Fuzzy neural network model based on neocognitron is proposed to identify layout objects on images of topological layers of integrated circuits. Testing of the model on images of real chip layouts was showed a highеr degree of identification of the proposed neural network in comparison to base neocognitron.

Multi-level damage identification with response reconstruction

Science.gov (United States)

Zhang, Chao-Dong; Xu, You-Lin

2017-10-01

Damage identification through finite element (FE) model updating usually forms an inverse problem. Solving the inverse identification problem for complex civil structures is very challenging since the dimension of potential damage parameters in a complex civil structure is often very large. Aside from enormous computation efforts needed in iterative updating, the ill-condition and non-global identifiability features of the inverse problem probably hinder the realization of model updating based damage identification for large civil structures. Following a divide-and-conquer strategy, a multi-level damage identification method is proposed in this paper. The entire structure is decomposed into several manageable substructures and each substructure is further condensed as a macro element using the component mode synthesis (CMS) technique. The damage identification is performed at two levels: the first is at macro element level to locate the potentially damaged region and the second is over the suspicious substructures to further locate as well as quantify the damage severity. In each level's identification, the damage searching space over which model updating is performed is notably narrowed down, not only reducing the computation amount but also increasing the damage identifiability. Besides, the Kalman filter-based response reconstruction is performed at the second level to reconstruct the response of the suspicious substructure for exact damage quantification. Numerical studies and laboratory tests are both conducted on a simply supported overhanging steel beam for conceptual verification. The results demonstrate that the proposed multi-level damage identification via response reconstruction does improve the identification accuracy of damage localization and quantization considerably.

Topology Identification of General Dynamical Network with Distributed Time Delays

International Nuclear Information System (INIS)

Zhao-Yan, Wu; Xin-Chu, Fu

2009-01-01

General dynamical networks with distributed time delays are studied. The topology of the networks are viewed as unknown parameters, which need to be identified. Some auxiliary systems (also called the network estimators) are designed to achieve this goal. Both linear feedback control and adaptive strategy are applied in designing these network estimators. Based on linear matrix inequalities and the Lyapunov function method, the sufficient condition for the achievement of topology identification is obtained. This method can also better monitor the switching topology of dynamical networks. Illustrative examples are provided to show the effectiveness of this method. (general)

Boosted jet identification using particle candidates and deep neural networks

CERN Document Server

CMS Collaboration

2017-01-01

This note presents developments for the identification of hadronically decaying top quarks using deep neural networks in CMS. A new method that utilizes one dimensional convolutional neural networks based on jet constituent particles is proposed. Alternative methods using boosted decision trees based on jet observables are compared. The new method shows significant improvement in performance.

Using Web2.0 social network technology for sampling framework identification and respondent recruitment: experiences with a small-scale experiment

NARCIS (Netherlands)

Grigolon, A.B.; Kemperman, A.D.A.M.; Timmermans, H.J.P.

2011-01-01

In this paper, we report the results of a small–scale experiment to explore the potential of using social network technology for respondent recruitment. Of particular interest are the following questions (i) can social media be used for the identification of sampling frames, (ii) what response rates

A Kalman-filter based approach to identification of time-varying gene regulatory networks.

Directory of Open Access Journals (Sweden)

Jie Xiong

Full Text Available MOTIVATION: Conventional identification methods for gene regulatory networks (GRNs have overwhelmingly adopted static topology models, which remains unchanged over time to represent the underlying molecular interactions of a biological system. However, GRNs are dynamic in response to physiological and environmental changes. Although there is a rich literature in modeling static or temporally invariant networks, how to systematically recover these temporally changing networks remains a major and significant pressing challenge. The purpose of this study is to suggest a two-step strategy that recovers time-varying GRNs. RESULTS: It is suggested in this paper to utilize a switching auto-regressive model to describe the dynamics of time-varying GRNs, and a two-step strategy is proposed to recover the structure of time-varying GRNs. In the first step, the change points are detected by a Kalman-filter based method. The observed time series are divided into several segments using these detection results; and each time series segment belonging to two successive demarcating change points is associated with an individual static regulatory network. In the second step, conditional network structure identification methods are used to reconstruct the topology for each time interval. This two-step strategy efficiently decouples the change point detection problem and the topology inference problem. Simulation results show that the proposed strategy can detect the change points precisely and recover each individual topology structure effectively. Moreover, computation results with the developmental data of Drosophila Melanogaster show that the proposed change point detection procedure is also able to work effectively in real world applications and the change point estimation accuracy exceeds other existing approaches, which means the suggested strategy may also be helpful in solving actual GRN reconstruction problem.

The NNSYSID Toolbox - A MATLAB Toolbox for System Identification with Neural Networks

DEFF Research Database (Denmark)

Nørgård, Peter Magnus; Ravn, Ole; Hansen, Lars Kai

1996-01-01

To assist the identification of nonlinear dynamic systems, a set of tools has been developed for the MATLAB(R) environment. The tools include a number of different model structures, highly effective training algorithms, functions for validating trained networks, and pruning algorithms for determi......To assist the identification of nonlinear dynamic systems, a set of tools has been developed for the MATLAB(R) environment. The tools include a number of different model structures, highly effective training algorithms, functions for validating trained networks, and pruning algorithms...

Real-Time Identification of Smoldering and Flaming Combustion Phases in Forest Using a Wireless Sensor Network-Based Multi-Sensor System and Artificial Neural Network.

Science.gov (United States)

Yan, Xiaofei; Cheng, Hong; Zhao, Yandong; Yu, Wenhua; Huang, Huan; Zheng, Xiaoliang

2016-08-04

Diverse sensing techniques have been developed and combined with machine learning method for forest fire detection, but none of them referred to identifying smoldering and flaming combustion phases. This study attempts to real-time identify different combustion phases using a developed wireless sensor network (WSN)-based multi-sensor system and artificial neural network (ANN). Sensors (CO, CO₂, smoke, air temperature and relative humidity) were integrated into one node of WSN. An experiment was conducted using burning materials from residual of forest to test responses of each node under no, smoldering-dominated and flaming-dominated combustion conditions. The results showed that the five sensors have reasonable responses to artificial forest fire. To reduce cost of the nodes, smoke, CO₂ and temperature sensors were chiefly selected through correlation analysis. For achieving higher identification rate, an ANN model was built and trained with inputs of four sensor groups: smoke; smoke and CO₂; smoke and temperature; smoke, CO₂ and temperature. The model test results showed that multi-sensor input yielded higher predicting accuracy (≥82.5%) than single-sensor input (50.9%-92.5%). Based on these, it is possible to reduce the cost with a relatively high fire identification rate and potential application of the system can be tested in future under real forest condition.

The Convolutional Visual Network for Identification and Reconstruction of NOvA Events

Energy Technology Data Exchange (ETDEWEB)

Psihas, Fernanda [Indiana U.

2017-11-22

In 2016 the NOvA experiment released results for the observation of oscillations in the vμ and ve channels as well as ve cross section measurements using neutrinos from Fermilab’s NuMI beam. These and other measurements in progress rely on the accurate identification and reconstruction of the neutrino flavor and energy recorded by our detectors. This presentation describes the first application of convolutional neural network technology for event identification and reconstruction in particle detectors like NOvA. The Convolutional Visual Network (CVN) Algorithm was developed for identification, categorization, and reconstruction of NOvA events. It increased the selection efficiency of the ve appearance signal by 40% and studies show potential impact to the vμ disappearance analysis.

User Identification Framework in Social Network Services Environment

Directory of Open Access Journals (Sweden)

Brijesh BAKARIYA

2014-01-01

Full Text Available Social Network Service is a one of the service where people may communicate with one an-other; and may also exchange messages even of any type of audio or video communication. Social Network Service as name suggests a type of network. Such type of web application plays a dominant role in internet technology. In such type of online community, people may share their common interest. Facebook LinkedIn, orkut and many more are the Social Network Service and it is good medium of making link with people having unique or common interest and goals. But the problem of privacy protection is a big issue in today’s world. As social networking sites allows anonymous users to share information of other stuffs. Due to which cybercrime is also increasing to a rapid extent. In this article we preprocessed the web log data of Social Network Services and assemble that data on the basis of image file format like jpg, jpeg, gif, png, bmp etc. and also propose a framework for victim’s identification.

An integer optimization algorithm for robust identification of non-linear gene regulatory networks

Directory of Open Access Journals (Sweden)

Chemmangattuvalappil Nishanth

2012-09-01

Full Text Available Abstract Background Reverse engineering gene networks and identifying regulatory interactions are integral to understanding cellular decision making processes. Advancement in high throughput experimental techniques has initiated innovative data driven analysis of gene regulatory networks. However, inherent noise associated with biological systems requires numerous experimental replicates for reliable conclusions. Furthermore, evidence of robust algorithms directly exploiting basic biological traits are few. Such algorithms are expected to be efficient in their performance and robust in their prediction. Results We have developed a network identification algorithm to accurately infer both the topology and strength of regulatory interactions from time series gene expression data in the presence of significant experimental noise and non-linear behavior. In this novel formulism, we have addressed data variability in biological systems by integrating network identification with the bootstrap resampling technique, hence predicting robust interactions from limited experimental replicates subjected to noise. Furthermore, we have incorporated non-linearity in gene dynamics using the S-system formulation. The basic network identification formulation exploits the trait of sparsity of biological interactions. Towards that, the identification algorithm is formulated as an integer-programming problem by introducing binary variables for each network component. The objective function is targeted to minimize the network connections subjected to the constraint of maximal agreement between the experimental and predicted gene dynamics. The developed algorithm is validated using both in silico and experimental data-sets. These studies show that the algorithm can accurately predict the topology and connection strength of the in silico networks, as quantified by high precision and recall, and small discrepancy between the actual and predicted kinetic parameters

Boosted decision trees as an alternative to artificial neural networks for particle identification

International Nuclear Information System (INIS)

Roe, Byron P.; Yang Haijun; Zhu Ji; Liu Yong; Stancu, Ion; McGregor, Gordon

2005-01-01

The efficacy of particle identification is compared using artificial neutral networks and boosted decision trees. The comparison is performed in the context of the MiniBooNE, an experiment at Fermilab searching for neutrino oscillations. Based on studies of Monte Carlo samples of simulated data, particle identification with boosting algorithms has better performance than that with artificial neural networks for the MiniBooNE experiment. Although the tests in this paper were for one experiment, it is expected that boosting algorithms will find wide application in physics

Topological derivatives of eigenvalues and neural networks in identification of imperfections

International Nuclear Information System (INIS)

Grzanek, M; Nowakowski, A; Sokolowski, J

2008-01-01

Numerical method for identification of imperfections is devised for elliptic spectral problems. The neural networks are employed for numerical solution. The topological derivatives of eigenvalues are used in the learning procedure of the neural networks. The topological derivatives of eigenvalues are determined by the methods of asymptotic analysis in singularly perturbed geometrical domains. The convergence of the numerical method in a probabilistic setting is analysed. The method is presented for the identification of small singular perturbations of the boundary of geometrical domain, however the framework is general and can be used for numerical solutions of inverse problems in the presence of small imperfections in the interior of the domain. Some numerical results are given for elliptic spectral problem in two spatial dimensions.

Identification of serial number on bank card using recurrent neural network

Science.gov (United States)

Liu, Li; Huang, Linlin; Xue, Jian

2018-04-01

Identification of serial number on bank card has many applications. Due to the different number printing mode, complex background, distortion in shape, etc., it is quite challenging to achieve high identification accuracy. In this paper, we propose a method using Normalization-Cooperated Gradient Feature (NCGF) and Recurrent Neural Network (RNN) based on Long Short-Term Memory (LSTM) for serial number identification. The NCGF maps the gradient direction elements of original image to direction planes such that the RNN with direction planes as input can recognize numbers more accurately. Taking the advantages of NCGF and RNN, we get 90%digit string recognition accuracy.

Empirical modeling of nuclear power plants using neural networks

International Nuclear Information System (INIS)

Parlos, A.G.; Atiya, A.; Chong, K.T.

1991-01-01

A summary of a procedure for nonlinear identification of process dynamics encountered in nuclear power plant components is presented in this paper using artificial neural systems. A hybrid feedforward/feedback neural network, namely, a recurrent multilayer perceptron, is used as the nonlinear structure for system identification. In the overall identification process, the feedforward portion of the network architecture provides its well-known interpolation property, while through recurrency and cross-talk, the local information feedback enables representation of time-dependent system nonlinearities. The standard backpropagation learning algorithm is modified and is used to train the proposed hybrid network in a supervised manner. The performance of recurrent multilayer perceptron networks in identifying process dynamics is investigated via the case study of a U-tube steam generator. The nonlinear response of a representative steam generator is predicted using a neural network and is compared to the response obtained from a sophisticated physical model during both high- and low-power operation. The transient responses compare well, though further research is warranted for training and testing of recurrent neural networks during more severe operational transients and accident scenarios

Topology identification of the complex networks with non-delayed and delayed coupling

International Nuclear Information System (INIS)

Guo Wanli; Chen Shihua; Sun Wen

2009-01-01

In practical situation, there exists many uncertain information in complex networks, such as the topological structures. So the topology identification is an important issue in the research of the complex networks. Based on LaSalle's invariance principle, in this Letter, an adaptive controlling method is proposed to identify the topology of a weighted general complex network model with non-delayed and delayed coupling. Finally, simulation results show that the method is effective.

People identification for domestic non-overlapping RGB-D camera networks

NARCIS (Netherlands)

Takac, B.; Rauterberg, G.W.M.; Català, A.; Chen, W.

2015-01-01

The ability to identify the specific person in a home camera network is very relevant for healthcare applications where humans need to be observed daily in their living environment. The appearance based people identification in a domestic environment has many similarities with the problem of

Enhancing response coordination through the assessment of response network structural dynamics.

Directory of Open Access Journals (Sweden)

Alireza Abbasi

Full Text Available Preparing for intensifying threats of emergencies in unexpected, dangerous, and serious natural or man-made events, and consequent management of the situation, is highly demanding in terms of coordinating the personnel and resources to support human lives and the environment. This necessitates prompt action to manage the uncertainties and risks imposed by such extreme events, which requires collaborative operation among different stakeholders (i.e., the personnel from both the state and local communities. This research aims to find a way to enhance the coordination of multi-organizational response operations. To do so, this manuscript investigates the role of participants in the formed coordination response network and also the emergence and temporal dynamics of the network. By analyzing an inter-personal response coordination operation to an extreme bushfire event, the networks' and participants' structural change is evaluated during the evolution of the operation network over four time durations. The results reveal that the coordination response network becomes more decentralized over time due to the high volume of communication required to exchange information. New emerging communication structures often do not fit the developed plans, which stress the need for coordination by feedback in addition to by plan. In addition, we find that the participant's brokering role in the response operation network identifies a formal and informal coordination role. This is useful for comparison of network structures to examine whether what really happens during response operations complies with the initial policy.

Mechanical response of biopolymer double networks

Science.gov (United States)

Carroll, Joshua; Das, Moumita

We investigate a double network model of articular cartilage (AC) and characterize its equilibrium mechanical response. AC has very few cells and the extracellular matrix mainly determines its mechanical response. This matrix can be thought of as a double polymer network made of collagen and aggrecan. The collagen fibers are stiff and resist tension and compression forces, while aggrecans are flexible and control swelling and hydration. We construct a microscopic model made of two interconnected disordered polymer networks, with fiber elasticity chosen to qualitatively mimic the experimental system. We study the collective mechanical response of this double network as a function of the concentration and stiffness of the individual components as well as the strength of the connection between them using rigidity percolation theory. Our results may provide a better understanding of mechanisms underlying the mechanical resilience of AC, and more broadly may also lead to new perspectives on the mechanical response of multicomponent soft materials. This work was partially supported by a Cottrell College Science Award.

Stability Analysis of Neural Networks-Based System Identification

Directory of Open Access Journals (Sweden)

Talel Korkobi

2008-01-01

Full Text Available This paper treats some problems related to nonlinear systems identification. A stability analysis neural network model for identifying nonlinear dynamic systems is presented. A constrained adaptive stable backpropagation updating law is presented and used in the proposed identification approach. The proposed backpropagation training algorithm is modified to obtain an adaptive learning rate guarantying convergence stability. The proposed learning rule is the backpropagation algorithm under the condition that the learning rate belongs to a specified range defining the stability domain. Satisfying such condition, unstable phenomena during the learning process are avoided. A Lyapunov analysis leads to the computation of the expression of a convenient adaptive learning rate verifying the convergence stability criteria. Finally, the elaborated training algorithm is applied in several simulations. The results confirm the effectiveness of the CSBP algorithm.

Structure Identification of Uncertain Complex Networks Based on Anticipatory Projective Synchronization.

Directory of Open Access Journals (Sweden)

Liu Heng

Full Text Available This paper investigates a method to identify uncertain system parameters and unknown topological structure in general complex networks with or without time delay. A complex network, which has uncertain topology and unknown parameters, is designed as a drive network, and a known response complex network with an input controller is designed to identify the drive network. Under the proposed input controller, the drive network and the response network can achieve anticipatory projective synchronization when the system is steady. Lyapunov theorem and Barbǎlat's lemma guarantee the stability of synchronization manifold between two networks. When the synchronization is achieved, the system parameters and topology in response network can be changed to equal with the parameters and topology in drive network. A numerical example is given to show the effectiveness of the proposed method.

Radioactivity nuclide identification based on BP and LM algorithm neural network

International Nuclear Information System (INIS)

Wang Jihong; Sun Jian; Wang Lianghou

2012-01-01

The paper provides the method which can identify radioactive nuclide based on the BP and LM algorithm neural network. Then, this paper compares the above-mentioned method with FR algorithm. Through the result of the Matlab simulation, the method of radioactivity nuclide identification based on the BP and LM algorithm neural network is superior to the FR algorithm. With the better effect and the higher accuracy, it will be the best choice. (authors)

On the identification of instabilities with neural networks on JET

International Nuclear Information System (INIS)

Murari, A.; Arena, P.; Buscarino, A.; Fortuna, L.; Iachello, M.

2013-01-01

JET plasmas are affected by various instabilities, which can be particularly dangerous in high performance discharges. An identification method, based on the use of advanced neural networks, called Recurrent Neural Networks (RNNs), has been applied to ELMs. The potential of the recurrent networks to identify the dynamics of the instabilities has been first tested using synthetic data. The networks have then been applied to JET experimental signals. An appropriate selection of the networks topology allows identifying quite well the time evolution of the edge temperature and of the magnetic fields, considered the best indicators of the ELMs. A quite limited number of periodic oscillations are used to train the networks, which then manage to follow quite well the dynamics of the instabilities, in a recurrent configuration on one of the inputs. The time evolution of the aforementioned signals, also during intervals not used in the training and never seen by the networks, are properly reproduced. A careful analysis of the various terms in the RNNs has the potential to give clear indications about the nature of these instabilities and their dynamical behaviour

An Explication and Test of Communication Network Content and Multiplexity as Predictors of Organizational Identification.

Science.gov (United States)

Bullis, Connie; Bach, Betsy Wackernagel

1991-01-01

Examines the relationship between identification and communication using organizational identification (OI) as a theoretical framework for studying communication networks among incoming graduate students in three university departments of communication. Concludes that, irrespective of initial OI, stronger initial multiplexity predicts the growth…

Role of centrality for the identification of influential spreaders in complex networks.

Science.gov (United States)

de Arruda, Guilherme Ferraz; Barbieri, André Luiz; Rodríguez, Pablo Martín; Rodrigues, Francisco A; Moreno, Yamir; Costa, Luciano da Fontoura

2014-09-01

The identification of the most influential spreaders in networks is important to control and understand the spreading capabilities of the system as well as to ensure an efficient information diffusion such as in rumorlike dynamics. Recent works have suggested that the identification of influential spreaders is not independent of the dynamics being studied. For instance, the key disease spreaders might not necessarily be so important when it comes to analyzing social contagion or rumor propagation. Additionally, it has been shown that different metrics (degree, coreness, etc.) might identify different influential nodes even for the same dynamical processes with diverse degrees of accuracy. In this paper, we investigate how nine centrality measures correlate with the disease and rumor spreading capabilities of the nodes in different synthetic and real-world (both spatial and nonspatial) networks. We also propose a generalization of the random walk accessibility as a new centrality measure and derive analytical expressions for the latter measure for simple network configurations. Our results show that for nonspatial networks, the k-core and degree centralities are the most correlated to epidemic spreading, whereas the average neighborhood degree, the closeness centrality, and accessibility are the most related to rumor dynamics. On the contrary, for spatial networks, the accessibility measure outperforms the rest of the centrality metrics in almost all cases regardless of the kind of dynamics considered. Therefore, an important consequence of our analysis is that previous studies performed in synthetic random networks cannot be generalized to the case of spatial networks.

On-line identification of hybrid systems using an adaptive growing and pruning RBF neural network

DEFF Research Database (Denmark)

Alizadeh, Tohid

2008-01-01

This paper introduces an adaptive growing and pruning radial basis function (GAP-RBF) neural network for on-line identification of hybrid systems. The main idea is to identify a global nonlinear model that can predict the continuous outputs of hybrid systems. In the proposed approach, GAP......-RBF neural network uses a modified unscented kalman filter (UKF) with forgetting factor scheme as the required on-line learning algorithm. The effectiveness of the resulting identification approach is tested and evaluated on a simulated benchmark hybrid system....

Identification of hadronic tau decays at the ATLAS detector using artificial neural networks

Energy Technology Data Exchange (ETDEWEB)

Duschinger, Dirk; Hanisch, Stefanie; Mader, Wolfgang; Madysa, Nico; Straessner, Arno [Institut fuer Kern- und Teilchenphysik, TU Dresden (Germany)

2016-07-01

One of the primary goals of the ATLAS experiment at the LHC is the search for physics beyond the Standard Model. The efficient identification of hadronically decaying tau leptons is crucial for this as they comprise the final states of several decay channels sensitive to new physics. (e. g. Higgs boson decays H → τ{sub had} τ{sub had}) The identification algorithm currently applied at ATLAS utilizes multi-variate methods and reconstructed particle properties to discriminate against QCD jets, which constitute an important background. This talk presents a new neural-network-based approach to hadronic tau decay identification and investigates its dependence on hyperparameters such as the network topology or number of training cycles. Ensembling is presented as a technique to improve classifier performance and robustness against overtraining. The resulting classifier is compared to the current approach based on Boosted Decision Trees. The study is based on 2012 data taken at the ATLAS detector at a center-of-mass energy of √(s)=8 TeV.

Optimal Sensor Networks Scheduling in Identification of Distributed Parameter Systems

CERN Document Server

Patan, Maciej

2012-01-01

Sensor networks have recently come into prominence because they hold the potential to revolutionize a wide spectrum of both civilian and military applications. An ingenious characteristic of sensor networks is the distributed nature of data acquisition. Therefore they seem to be ideally prepared for the task of monitoring processes with spatio-temporal dynamics which constitute one of most general and important classes of systems in modelling of the real-world phenomena. It is clear that careful deployment and activation of sensor nodes are critical for collecting the most valuable information from the observed environment. Optimal Sensor Network Scheduling in Identification of Distributed Parameter Systems discusses the characteristic features of the sensor scheduling problem, analyzes classical and recent approaches, and proposes a wide range of original solutions, especially dedicated for networks with mobile and scanning nodes. Both researchers and practitioners will find the case studies, the proposed al...

Real-time radionuclide identification in γ-emitter mixtures based on spiking neural network

International Nuclear Information System (INIS)

Bobin, C.; Bichler, O.; Lourenço, V.; Thiam, C.; Thévenin, M.

2016-01-01

Portal radiation monitors dedicated to the prevention of illegal traffic of nuclear materials at international borders need to deliver as fast as possible a radionuclide identification of a potential radiological threat. Spectrometry techniques applied to identify the radionuclides contributing to γ-emitter mixtures are usually performed using off-line spectrum analysis. As an alternative to these usual methods, a real-time processing based on an artificial neural network and Bayes’ rule is proposed for fast radionuclide identification. The validation of this real-time approach was carried out using γ-emitter spectra ( 241 Am, 133 Ba, 207 Bi, 60 Co, 137 Cs) obtained with a high-efficiency well-type NaI(Tl). The first tests showed that the proposed algorithm enables a fast identification of each γ-emitting radionuclide using the information given by the whole spectrum. Based on an iterative process, the on-line analysis only needs low-statistics spectra without energy calibration to identify the nature of a radiological threat. - Highlights: • A fast radionuclide identification algorithm applicable in spectroscopic portal monitors is presented. • The proposed algorithm combines a Bayesian sequential approach and a spiking neural network. • The algorithm was validated using the mixture of γ-emitter spectra provided by a well-type NaI(Tl) detector. • The radionuclide identification process is implemented using the whole γ-spectrum without energy calibration.

Identification and management of distributed data NGN, content-centric networks and the web

CERN Document Server

Bartolomeo, Giovanni

2013-01-01

Although several books and academic courses discuss data management and networking, few of them focus on the convergence of networking and software technologies for identifying, addressing, and managing distributed data. Focusing on this convergence, Identification and Management of Distributed Data: NGN, Content-Centric Networks and the Web collates and describes the various distributed data management technologies to help readers from various backgrounds understand the common aspects that govern distributed data management. With a focus on the primary problems in identifying, addressing, and

Integration of Online Parameter Identification and Neural Network for In-Flight Adaptive Control

Science.gov (United States)

Hageman, Jacob J.; Smith, Mark S.; Stachowiak, Susan

2003-01-01

An indirect adaptive system has been constructed for robust control of an aircraft with uncertain aerodynamic characteristics. This system consists of a multilayer perceptron pre-trained neural network, online stability and control derivative identification, a dynamic cell structure online learning neural network, and a model following control system based on the stochastic optimal feedforward and feedback technique. The pre-trained neural network and model following control system have been flight-tested, but the online parameter identification and online learning neural network are new additions used for in-flight adaptation of the control system model. A description of the modification and integration of these two stand-alone software packages into the complete system in preparation for initial flight tests is presented. Open-loop results using both simulation and flight data, as well as closed-loop performance of the complete system in a nonlinear, six-degree-of-freedom, flight validated simulation, are analyzed. Results show that this online learning system, in contrast to the nonlearning system, has the ability to adapt to changes in aerodynamic characteristics in a real-time, closed-loop, piloted simulation, resulting in improved flying qualities.

Flow Regime Identification of Co-Current Downward Two-Phase Flow With Neural Network Approach

International Nuclear Information System (INIS)

Hiroshi Goda; Seungjin Kim; Ye Mi; Finch, Joshua P.; Mamoru Ishii; Jennifer Uhle

2002-01-01

Flow regime identification for an adiabatic vertical co-current downward air-water two-phase flow in the 25.4 mm ID and the 50.8 mm ID round tubes was performed by employing an impedance void meter coupled with the neural network classification approach. This approach minimizes the subjective judgment in determining the flow regimes. The signals obtained by an impedance void meter were applied to train the self-organizing neural network to categorize these impedance signals into a certain number of groups. The characteristic parameters set into the neural network classification included the mean, standard deviation and skewness of impedance signals in the present experiment. The classification categories adopted in the present investigation were four widely accepted flow regimes, viz. bubbly, slug, churn-turbulent, and annular flows. These four flow regimes were recognized based upon the conventional flow visualization approach by a high-speed motion analyzer. The resulting flow regime maps classified by the neural network were compared with the results obtained through the flow visualization method, and consequently the efficiency of the neural network classification for flow regime identification was demonstrated. (authors)

Identification of neutral biochemical network models from time series data.

Science.gov (United States)

Vilela, Marco; Vinga, Susana; Maia, Marco A Grivet Mattoso; Voit, Eberhard O; Almeida, Jonas S

2009-05-05

The major difficulty in modeling biological systems from multivariate time series is the identification of parameter sets that endow a model with dynamical behaviors sufficiently similar to the experimental data. Directly related to this parameter estimation issue is the task of identifying the structure and regulation of ill-characterized systems. Both tasks are simplified if the mathematical model is canonical, i.e., if it is constructed according to strict guidelines. In this report, we propose a method for the identification of admissible parameter sets of canonical S-systems from biological time series. The method is based on a Monte Carlo process that is combined with an improved version of our previous parameter optimization algorithm. The method maps the parameter space into the network space, which characterizes the connectivity among components, by creating an ensemble of decoupled S-system models that imitate the dynamical behavior of the time series with sufficient accuracy. The concept of sloppiness is revisited in the context of these S-system models with an exploration not only of different parameter sets that produce similar dynamical behaviors but also different network topologies that yield dynamical similarity. The proposed parameter estimation methodology was applied to actual time series data from the glycolytic pathway of the bacterium Lactococcus lactis and led to ensembles of models with different network topologies. In parallel, the parameter optimization algorithm was applied to the same dynamical data upon imposing a pre-specified network topology derived from prior biological knowledge, and the results from both strategies were compared. The results suggest that the proposed method may serve as a powerful exploration tool for testing hypotheses and the design of new experiments.

Experimental Damage Identification of a Model Reticulated Shell

Directory of Open Access Journals (Sweden)

Jing Xu

2017-04-01

Full Text Available The damage identification of a reticulated shell is a challenging task, facing various difficulties, such as the large number of degrees of freedom (DOFs, the phenomenon of modal localization and transition, and low modeling accuracy. Based on structural vibration responses, the damage identification of a reticulated shell was studied. At first, the auto-regressive (AR time series model was established based on the acceleration responses of the reticulated shell. According to the changes in the coefficients of the AR model between the damaged conditions and the undamaged condition, the damage of the reticulated shell can be detected. In addition, the damage sensitive factors were determined based on the coefficients of the AR model. With the damage sensitive factors as the inputs and the damage positions as the outputs, back-propagation neural networks (BPNNs were then established and were trained using the Levenberg–Marquardt algorithm (L–M algorithm. The locations of the damages can be predicted by the back-propagation neural networks. At last, according to the experimental scheme of single-point excitation and multi-point responses, the impact experiments on a K6 shell model with a scale of 1/10 were conducted. The experimental results verified the efficiency of the proposed damage identification method based on the AR time series model and back-propagation neural networks. The proposed damage identification method can ensure the safety of the practical engineering to some extent.

Dynamic neural networks based on-line identification and control of high performance motor drives

Science.gov (United States)

Rubaai, Ahmed; Kotaru, Raj

1995-01-01

In the automated and high-tech industries of the future, there wil be a need for high performance motor drives both in the low-power range and in the high-power range. To meet very straight demands of tracking and regulation in the two quadrants of operation, advanced control technologies are of a considerable interest and need to be developed. In response a dynamics learning control architecture is developed with simultaneous on-line identification and control. the feature of the proposed approach, to efficiently combine the dual task of system identification (learning) and adaptive control of nonlinear motor drives into a single operation is presented. This approach, therefore, not only adapts to uncertainties of the dynamic parameters of the motor drives but also learns about their inherent nonlinearities. In fact, most of the neural networks based adaptive control approaches in use have an identification phase entirely separate from the control phase. Because these approaches separate the identification and control modes, it is not possible to cope with dynamic changes in a controlled process. Extensive simulation studies have been conducted and good performance was observed. The robustness characteristics of neuro-controllers to perform efficiently in a noisy environment is also demonstrated. With this initial success, the principal investigator believes that the proposed approach with the suggested neural structure can be used successfully for the control of high performance motor drives. Two identification and control topologies based on the model reference adaptive control technique are used in this present analysis. No prior knowledge of load dynamics is assumed in either topology while the second topology also assumes no knowledge of the motor parameters.

Effect of size heterogeneity on community identification in complex networks

Energy Technology Data Exchange (ETDEWEB)

Danon, L.; Diaz-Guilera, A.; Arenas, A.

2008-01-01

Identifying community structure can be a potent tool in the analysis and understanding of the structure of complex networks. Up to now, methods for evaluating the performance of identification algorithms use ad-hoc networks with communities of equal size. We show that inhomogeneities in community sizes can and do affect the performance of algorithms considerably, and propose an alternative method which takes these factors into account. Furthermore, we propose a simple modification of the algorithm proposed by Newman for community detection (Phys. Rev. E 69 066133) which treats communities of different sizes on an equal footing, and show that it outperforms the original algorithm while retaining its speed.

Identification and adaptive neural network control of a DC motor system with dead-zone characteristics.

Science.gov (United States)

Peng, Jinzhu; Dubay, Rickey

2011-10-01

In this paper, an adaptive control approach based on the neural networks is presented to control a DC motor system with dead-zone characteristics (DZC), where two neural networks are proposed to formulate the traditional identification and control approaches. First, a Wiener-type neural network (WNN) is proposed to identify the motor DZC, which formulates the Wiener model with a linear dynamic block in cascade with a nonlinear static gain. Second, a feedforward neural network is proposed to formulate the traditional PID controller, termed as PID-type neural network (PIDNN), which is then used to control and compensate for the DZC. In this way, the DC motor system with DZC is identified by the WNN identifier, which provides model information to the PIDNN controller in order to make it adaptive. Back-propagation algorithms are used to train both neural networks. Also, stability and convergence analysis are conducted using the Lyapunov theorem. Finally, experiments on the DC motor system demonstrated accurate identification and good compensation for dead-zone with improved control performance over the conventional PID control. Copyright © 2011 ISA. Published by Elsevier Ltd. All rights reserved.

Bistable responses in bacterial genetic networks: Designs and dynamical consequences

Science.gov (United States)

Tiwari, Abhinav; Ray, J. Christian J.; Narula, Jatin; Igoshin, Oleg A.

2011-01-01

A key property of living cells is their ability to react to stimuli with specific biochemical responses. These responses can be understood through the dynamics of underlying biochemical and genetic networks. Evolutionary design principles have been well studied in networks that display graded responses, with a continuous relationship between input signal and system output. Alternatively, biochemical networks can exhibit bistable responses so that over a range of signals the network possesses two stable steady states. In this review, we discuss several conceptual examples illustrating network designs that can result in a bistable response of the biochemical network. Next, we examine manifestations of these designs in bacterial master-regulatory genetic circuits. In particular, we discuss mechanisms and dynamic consequences of bistability in three circuits: two-component systems, sigma-factor networks, and a multistep phosphorelay. Analyzing these examples allows us to expand our knowledge of evolutionary design principles for networks with bistable responses. PMID:21385588

Survivors' Discursive Construction of Organizational Identification after a Downsizing

DEFF Research Database (Denmark)

Aggerholm, Helle Kryger; Andersen, Mona Agerholm

of transactional contract, 3) contextual dis-identification due to radical, cultural changes, elimination of networks and poor corporate reputation, and 4) procedural dis-identification caused by lack of procedural credibility, disrespect and responsibility avoidance. The results of this study indicate...... that a strong identification with the pre-downsized organization seems to foster a strong sense of dis-identification with the post-downsized organization. The implications of these findings are discussed and recommendations for future research are provided....

Identification of the Bacterial Community Responsible for ...

African Journals Online (AJOL)

Identification of bacteria community responsible for decontaminating Eleme petrochemical industrial effluent using 16S PCR denaturing gradient gel electrophoresis (DGGE) was determined. Gene profiles were determined by extracting DNA from bacterial isolates and amplified by polymerase chain reaction (PCR) using ...

Identification of complex systems by artificial neural networks. Applications to mechanical frictions

International Nuclear Information System (INIS)

Dominguez, Manuel

1998-01-01

In the frame of complex systems modelization, we describe in this report the contribution of neural networks to mechanical friction modelization. This thesis is divided in three parts, each one corresponding to every stage of the realized work. The first part takes stock of the properties of neural networks by replacing them in the statistic frame of learning theory (particularly: non-linear and non-parametric regression models) and by showing the existing links with other more 'classic' techniques from automatics. We show then how identification models can be integrated in the neural networks description as a larger nonlinear model class. A methodology of neural networks use have been developed. We focused on validation techniques using correlation functions for non-linear systems, and on the use of regularization methods. The second part deals with the problematic of friction in mechanical systems. Particularly, we present the main current identified physical phenomena, which are integrated in advanced friction modelization. Characterization of these phenomena allows us to state a priori knowledge to be used in the identification stage. We expose some of the most well-known friction models: Dahl's model, Reset Integrator and Canuda's dynamical model, which are then used in simulation studies. The last part links the former one by illustrating a real-world application: an electric jack from SFIM-Industries, used in the Very Large Telescope (VLT) control scheme. This part begins with physical system presentation. The results are compared with more 'classic' methods. We finish using neural networks compensation scheme in closed-loop control. (author) [fr

Identification of neutral biochemical network models from time series data

Directory of Open Access Journals (Sweden)

Maia Marco

2009-05-01

Full Text Available Abstract Background The major difficulty in modeling biological systems from multivariate time series is the identification of parameter sets that endow a model with dynamical behaviors sufficiently similar to the experimental data. Directly related to this parameter estimation issue is the task of identifying the structure and regulation of ill-characterized systems. Both tasks are simplified if the mathematical model is canonical, i.e., if it is constructed according to strict guidelines. Results In this report, we propose a method for the identification of admissible parameter sets of canonical S-systems from biological time series. The method is based on a Monte Carlo process that is combined with an improved version of our previous parameter optimization algorithm. The method maps the parameter space into the network space, which characterizes the connectivity among components, by creating an ensemble of decoupled S-system models that imitate the dynamical behavior of the time series with sufficient accuracy. The concept of sloppiness is revisited in the context of these S-system models with an exploration not only of different parameter sets that produce similar dynamical behaviors but also different network topologies that yield dynamical similarity. Conclusion The proposed parameter estimation methodology was applied to actual time series data from the glycolytic pathway of the bacterium Lactococcus lactis and led to ensembles of models with different network topologies. In parallel, the parameter optimization algorithm was applied to the same dynamical data upon imposing a pre-specified network topology derived from prior biological knowledge, and the results from both strategies were compared. The results suggest that the proposed method may serve as a powerful exploration tool for testing hypotheses and the design of new experiments.

Individual Identification Using Functional Brain Fingerprint Detected by Recurrent Neural Network.

Science.gov (United States)

Chen, Shiyang; Hu, Xiaoping P

2018-03-20

Individual identification based on brain function has gained traction in literature. Investigating individual differences in brain function can provide additional insights into the brain. In this work, we introduce a recurrent neural network based model for identifying individuals based on only a short segment of resting state functional MRI data. In addition, we demonstrate how the global signal and differences in atlases affect the individual identifiability. Furthermore, we investigate neural network features that exhibit the uniqueness of each individual. The results indicate that our model is able to identify individuals based on neural features and provides additional information regarding brain dynamics.

Village Building Identification Based on Ensemble Convolutional Neural Networks

Science.gov (United States)

Guo, Zhiling; Chen, Qi; Xu, Yongwei; Shibasaki, Ryosuke; Shao, Xiaowei

2017-01-01

In this study, we present the Ensemble Convolutional Neural Network (ECNN), an elaborate CNN frame formulated based on ensembling state-of-the-art CNN models, to identify village buildings from open high-resolution remote sensing (HRRS) images. First, to optimize and mine the capability of CNN for village mapping and to ensure compatibility with our classification targets, a few state-of-the-art models were carefully optimized and enhanced based on a series of rigorous analyses and evaluations. Second, rather than directly implementing building identification by using these models, we exploited most of their advantages by ensembling their feature extractor parts into a stronger model called ECNN based on the multiscale feature learning method. Finally, the generated ECNN was applied to a pixel-level classification frame to implement object identification. The proposed method can serve as a viable tool for village building identification with high accuracy and efficiency. The experimental results obtained from the test area in Savannakhet province, Laos, prove that the proposed ECNN model significantly outperforms existing methods, improving overall accuracy from 96.64% to 99.26%, and kappa from 0.57 to 0.86. PMID:29084154

[Terahertz Spectroscopic Identification with Deep Belief Network].

Science.gov (United States)

Ma, Shuai; Shen, Tao; Wang, Rui-qi; Lai, Hua; Yu, Zheng-tao

2015-12-01

Feature extraction and classification are the key issues of terahertz spectroscopy identification. Because many materials have no apparent absorption peaks in the terahertz band, it is difficult to extract theirs terahertz spectroscopy feature and identify. To this end, a novel of identify terahertz spectroscopy approach with Deep Belief Network (DBN) was studied in this paper, which combines the advantages of DBN and K-Nearest Neighbors (KNN) classifier. Firstly, cubic spline interpolation and S-G filter were used to normalize the eight kinds of substances (ATP, Acetylcholine Bromide, Bifenthrin, Buprofezin, Carbazole, Bleomycin, Buckminster and Cylotriphosphazene) terahertz transmission spectra in the range of 0.9-6 THz. Secondly, the DBN model was built by two restricted Boltzmann machine (RBM) and then trained layer by layer using unsupervised approach. Instead of using handmade features, the DBN was employed to learn suitable features automatically with raw input data. Finally, a KNN classifier was applied to identify the terahertz spectrum. Experimental results show that using the feature learned by DBN can identify the terahertz spectrum of different substances with the recognition rate of over 90%, which demonstrates that the proposed method can automatically extract the effective features of terahertz spectrum. Furthermore, this KNN classifier was compared with others (BP neural network, SOM neural network and RBF neural network). Comparisons showed that the recognition rate of KNN classifier is better than the other three classifiers. Using the approach that automatic extract terahertz spectrum features by DBN can greatly reduce the workload of feature extraction. This proposed method shows a promising future in the application of identifying the mass terahertz spectroscopy.

Development of objective flow regime identification method using self-organizing neural network

International Nuclear Information System (INIS)

Lee, Jae Young; Kim, Nam Seok; Kwak, Nam Yee

2004-01-01

Two-phase flow shows various flow patterns according to the amount of the void and its relative velocity to the liquid flow. This variation directly affect the interfacial transfer which is the key factor for the design or analysis of the phase change systems. Especially the safety analysis of the nuclear power plant has been performed based on the numerical code furnished with the proper constitutive relations depending highly upon the flow regimes. Heavy efforts have been focused to identify the flow regime and at this moment we stand on relative very stable engineering background compare to the other research field. However, the issues related to objectiveness and transient flow regime are still open to study. Lee et al. and Ishii developed the method for the objective and instantaneous flow regime identification based on the neural network and new index of probability distribution of the flow regime which allows just one second observation for the flow regime identification. In the present paper, we developed the self-organized neural network for more objective approach to this problem. Kohonen's Self-Organizing Map (SOM) has been used for clustering, visualization, and abstraction. The SOM is trained through unsupervised competitive learning using a 'winner takes it all' policy. Therefore, its unsupervised training character delete the possible interference of the regime developer to the neural network training. After developing the computer code, we evaluate the performance of the code with the vertically upward two-phase flow in the pipes of 25.4 and 50.4 cmm I.D. Also, the sensitivity of the number of the clusters to the flow regime identification was made

ISINA: INTEGRAL Source Identification Network Algorithm

Science.gov (United States)

Scaringi, S.; Bird, A. J.; Clark, D. J.; Dean, A. J.; Hill, A. B.; McBride, V. A.; Shaw, S. E.

2008-11-01

We give an overview of ISINA: INTEGRAL Source Identification Network Algorithm. This machine learning algorithm, using random forests, is applied to the IBIS/ISGRI data set in order to ease the production of unbiased future soft gamma-ray source catalogues. First, we introduce the data set and the problems encountered when dealing with images obtained using the coded mask technique. The initial step of source candidate searching is introduced and an initial candidate list is created. A description of the feature extraction on the initial candidate list is then performed together with feature merging for these candidates. Three training and testing sets are created in order to deal with the diverse time-scales encountered when dealing with the gamma-ray sky. Three independent random forests are built: one dealing with faint persistent source recognition, one dealing with strong persistent sources and a final one dealing with transients. For the latter, a new transient detection technique is introduced and described: the transient matrix. Finally the performance of the network is assessed and discussed using the testing set and some illustrative source examples. Based on observations with INTEGRAL, an ESA project with instruments and science data centre funded by ESA member states (especially the PI countries: Denmark, France, Germany, Italy, Spain), Czech Republic and Poland, and the participation of Russia and the USA. E-mail: simo@astro.soton.ac.uk

Lithofacies identification using multiple adaptive resonance theory neural networks and group decision expert system

Science.gov (United States)

Chang, H.-C.; Kopaska-Merkel, D. C.; Chen, H.-C.; Rocky, Durrans S.

2000-01-01

Lithofacies identification supplies qualitative information about rocks. Lithofacies represent rock textures and are important components of hydrocarbon reservoir description. Traditional techniques of lithofacies identification from core data are costly and different geologists may provide different interpretations. In this paper, we present a low-cost intelligent system consisting of three adaptive resonance theory neural networks and a rule-based expert system to consistently and objectively identify lithofacies from well-log data. The input data are altered into different forms representing different perspectives of observation of lithofacies. Each form of input is processed by a different adaptive resonance theory neural network. Among these three adaptive resonance theory neural networks, one neural network processes the raw continuous data, another processes categorial data, and the third processes fuzzy-set data. Outputs from these three networks are then combined by the expert system using fuzzy inference to determine to which facies the input data should be assigned. Rules are prioritized to emphasize the importance of firing order. This new approach combines the learning ability of neural networks, the adaptability of fuzzy logic, and the expertise of geologists to infer facies of the rocks. This approach is applied to the Appleton Field, an oil field located in Escambia County, Alabama. The hybrid intelligence system predicts lithofacies identity from log data with 87.6% accuracy. This prediction is more accurate than those of single adaptive resonance theory networks, 79.3%, 68.0% and 66.0%, using raw, fuzzy-set, and categorical data, respectively, and by an error-backpropagation neural network, 57.3%. (C) 2000 Published by Elsevier Science Ltd. All rights reserved.

Robust network topologies for generating switch-like cellular responses.

Directory of Open Access Journals (Sweden)

Najaf A Shah

2011-06-01

Full Text Available Signaling networks that convert graded stimuli into binary, all-or-none cellular responses are critical in processes ranging from cell-cycle control to lineage commitment. To exhaustively enumerate topologies that exhibit this switch-like behavior, we simulated all possible two- and three-component networks on random parameter sets, and assessed the resulting response profiles for both steepness (ultrasensitivity and extent of memory (bistability. Simulations were used to study purely enzymatic networks, purely transcriptional networks, and hybrid enzymatic/transcriptional networks, and the topologies in each class were rank ordered by parametric robustness (i.e., the percentage of applied parameter sets exhibiting ultrasensitivity or bistability. Results reveal that the distribution of network robustness is highly skewed, with the most robust topologies clustering into a small number of motifs. Hybrid networks are the most robust in generating ultrasensitivity (up to 28% and bistability (up to 18%; strikingly, a purely transcriptional framework is the most fragile in generating either ultrasensitive (up to 3% or bistable (up to 1% responses. The disparity in robustness among the network classes is due in part to zero-order ultrasensitivity, an enzyme-specific phenomenon, which repeatedly emerges as a particularly robust mechanism for generating nonlinearity and can act as a building block for switch-like responses. We also highlight experimentally studied examples of topologies enabling switching behavior, in both native and synthetic systems, that rank highly in our simulations. This unbiased approach for identifying topologies capable of a given response may be useful in discovering new natural motifs and in designing robust synthetic gene networks.

Performance of wavelet analysis and neural networks for pathological voices identification

Science.gov (United States)

Salhi, Lotfi; Talbi, Mourad; Abid, Sabeur; Cherif, Adnane

2011-09-01

Within the medical environment, diverse techniques exist to assess the state of the voice of the patient. The inspection technique is inconvenient for a number of reasons, such as its high cost, the duration of the inspection, and above all, the fact that it is an invasive technique. This study focuses on a robust, rapid and accurate system for automatic identification of pathological voices. This system employs non-invasive, non-expensive and fully automated method based on hybrid approach: wavelet transform analysis and neural network classifier. First, we present the results obtained in our previous study while using classic feature parameters. These results allow visual identification of pathological voices. Second, quantified parameters drifting from the wavelet analysis are proposed to characterise the speech sample. On the other hand, a system of multilayer neural networks (MNNs) has been developed which carries out the automatic detection of pathological voices. The developed method was evaluated using voice database composed of recorded voice samples (continuous speech) from normophonic or dysphonic speakers. The dysphonic speakers were patients of a National Hospital 'RABTA' of Tunis Tunisia and a University Hospital in Brussels, Belgium. Experimental results indicate a success rate ranging between 75% and 98.61% for discrimination of normal and pathological voices using the proposed parameters and neural network classifier. We also compared the average classification rate based on the MNN, Gaussian mixture model and support vector machines.

System Identification of Mistuned Bladed Disks from Traveling Wave Response Measurements

Science.gov (United States)

Feiner, D. M.; Griffin, J. H.; Jones, K. W.; Kenyon, J. A.; Mehmed, O.; Kurkov, A. P.

2003-01-01

A new approach to modal analysis is presented. By applying this technique to bladed disk system identification methods, one can determine the mistuning in a rotor based on its response to a traveling wave excitation. This allows system identification to be performed under rotating conditions, and thus expands the applicability of existing mistuning identification techniques from integrally bladed rotors to conventional bladed disks.

Modal Parameter Identification from Responses of General Unknown Random Inputs

DEFF Research Database (Denmark)

Ibrahim, S. R.; Asmussen, J. C.; Brincker, Rune

1996-01-01

Modal parameter identification from ambient responses due to a general unknown random inputs is investigated. Existing identification techniques which are based on assumptions of white noise and or stationary random inputs are utilized even though the inputs conditions are not satisfied....... This is accomplished via adding. In cascade. A force cascade conversion to the structures system under consideration. The input to the force conversion system is white noise and the output of which is the actual force(s) applied to the structure. The white noise input(s) and the structures responses are then used...

An Intelligent QoS Identification for Untrustworthy Web Services Via Two-phase Neural Networks

OpenAIRE

Wang, Weidong; Wang, Liqiang; Lu, Wei

2016-01-01

QoS identification for untrustworthy Web services is critical in QoS management in the service computing since the performance of untrustworthy Web services may result in QoS downgrade. The key issue is to intelligently learn the characteristics of trustworthy Web services from different QoS levels, then to identify the untrustworthy ones according to the characteristics of QoS metrics. As one of the intelligent identification approaches, deep neural network has emerged as a powerful techniqu...

Sensor network based vehicle classification and license plate identification system

Energy Technology Data Exchange (ETDEWEB)

Frigo, Janette Rose [Los Alamos National Laboratory; Brennan, Sean M [Los Alamos National Laboratory; Rosten, Edward J [Los Alamos National Laboratory; Raby, Eric Y [Los Alamos National Laboratory; Kulathumani, Vinod K [WEST VIRGINIA UNIV.

2009-01-01

Typically, for energy efficiency and scalability purposes, sensor networks have been used in the context of environmental and traffic monitoring applications in which operations at the sensor level are not computationally intensive. But increasingly, sensor network applications require data and compute intensive sensors such video cameras and microphones. In this paper, we describe the design and implementation of two such systems: a vehicle classifier based on acoustic signals and a license plate identification system using a camera. The systems are implemented in an energy-efficient manner to the extent possible using commercially available hardware, the Mica motes and the Stargate platform. Our experience in designing these systems leads us to consider an alternate more flexible, modular, low-power mote architecture that uses a combination of FPGAs, specialized embedded processing units and sensor data acquisition systems.

Identification of influential users by neighbors in online social networks

Science.gov (United States)

Sheikhahmadi, Amir; Nematbakhsh, Mohammad Ali; Zareie, Ahmad

2017-11-01

Identification and ranking of influential users in social networks for the sake of news spreading and advertising has recently become an attractive field of research. Given the large number of users in social networks and also the various relations that exist among them, providing an effective method to identify influential users has been gradually considered as an essential factor. In most of the already-provided methods, those users who are located in an appropriate structural position of the network are regarded as influential users. These methods do not usually pay attention to the interactions among users, and also consider those relations as being binary in nature. This paper, therefore, proposes a new method to identify influential users in a social network by considering those interactions that exist among the users. Since users tend to act within the frame of communities, the network is initially divided into different communities. Then the amount of interaction among users is used as a parameter to set the weight of relations existing within the network. Afterward, by determining the neighbors' role for each user, a two-level method is proposed for both detecting users' influence and also ranking them. Simulation and experimental results on twitter data shows that those users who are selected by the proposed method, comparing to other existing ones, are distributed in a more appropriate distance. Moreover, the proposed method outperforms the other ones in terms of both the influential speed and capacity of the users it selects.

Identification of host response signatures of infection.

Energy Technology Data Exchange (ETDEWEB)

Branda, Steven S.; Sinha, Anupama; Bent, Zachary

2013-02-01

Biological weapons of mass destruction and emerging infectious diseases represent a serious and growing threat to our national security. Effective response to a bioattack or disease outbreak critically depends upon efficient and reliable distinguishing between infected vs healthy individuals, to enable rational use of scarce, invasive, and/or costly countermeasures (diagnostics, therapies, quarantine). Screening based on direct detection of the causative pathogen can be problematic, because culture- and probe-based assays are confounded by unanticipated pathogens (e.g., deeply diverged, engineered), and readily-accessible specimens (e.g., blood) often contain little or no pathogen, particularly at pre-symptomatic stages of disease. Thus, in addition to the pathogen itself, one would like to detect infection-specific host response signatures in the specimen, preferably ones comprised of nucleic acids (NA), which can be recovered and amplified from tiny specimens (e.g., fingerstick draws). Proof-of-concept studies have not been definitive, however, largely due to use of sub-optimal sample preparation and detection technologies. For purposes of pathogen detection, Sandia has developed novel molecular biology methods that enable selective isolation of NA unique to, or shared between, complex samples, followed by identification and quantitation via Second Generation Sequencing (SGS). The central hypothesis of the current study is that variations on this approach will support efficient identification and verification of NA-based host response signatures of infectious disease. To test this hypothesis, we re-engineered Sandia's sophisticated sample preparation pipelines, and developed new SGS data analysis tools and strategies, in order to pioneer use of SGS for identification of host NA correlating with infection. Proof-of-concept studies were carried out using specimens drawn from pathogen-infected non-human primates (NHP). This work provides a strong foundation for

Temporal neural network for the identification of nuclear power plant transients

International Nuclear Information System (INIS)

Uluyol, O.; Ragheb, M.

1993-01-01

In this paper a layered spatiotemporal neural network is proposed for the identification of nuclear power plant transients. The developed layered spatiotemporal network is inspired by the formal avalanche structure developed by S. Grossberg and offers advantages compared with the stationary pattern approach using the perceptron paradigm. Each layer in the network is trained to recognize a separate time-dependent accident scenario. Within each scenario, the temporal behavior of the relevant parameters such as pressurizer pressure, pressurizer water volume, cold and hot legs temperatures, vessel flow, and power, are considered. Numerical cases are considered where the proposed methodology is applied to two nuclear power plant anticipated transient scenarios: the Station Blackout and the Anticipated Transient without Scram transients in a pressurized water reactor . The transient signatures used were generated by modeling the accidents using RELAP5/MOD2, a best-estimate thermal-hydraulics numerical code. The ability of the proposed layered spatiotemporal network to operate at different noise levels is investigated. Its incorporation within an Insightful Algorithm and Anticipatory Systems context for identifying and in predicting the course of nuclear transients is discussed

Discovering functional interdependence relationship in PPI networks for protein complex identification.

Science.gov (United States)

Lam, Winnie W M; Chan, Keith C C

2012-04-01

Protein molecules interact with each other in protein complexes to perform many vital functions, and different computational techniques have been developed to identify protein complexes in protein-protein interaction (PPI) networks. These techniques are developed to search for subgraphs of high connectivity in PPI networks under the assumption that the proteins in a protein complex are highly interconnected. While these techniques have been shown to be quite effective, it is also possible that the matching rate between the protein complexes they discover and those that are previously determined experimentally be relatively low and the "false-alarm" rate can be relatively high. This is especially the case when the assumption of proteins in protein complexes being more highly interconnected be relatively invalid. To increase the matching rate and reduce the false-alarm rate, we have developed a technique that can work effectively without having to make this assumption. The name of the technique called protein complex identification by discovering functional interdependence (PCIFI) searches for protein complexes in PPI networks by taking into consideration both the functional interdependence relationship between protein molecules and the network topology of the network. The PCIFI works in several steps. The first step is to construct a multiple-function protein network graph by labeling each vertex with one or more of the molecular functions it performs. The second step is to filter out protein interactions between protein pairs that are not functionally interdependent of each other in the statistical sense. The third step is to make use of an information-theoretic measure to determine the strength of the functional interdependence between all remaining interacting protein pairs. Finally, the last step is to try to form protein complexes based on the measure of the strength of functional interdependence and the connectivity between proteins. For performance evaluation

Identification of chaotic systems by neural network with hybrid learning algorithm

International Nuclear Information System (INIS)

Pan, S.-T.; Lai, C.-C.

2008-01-01

Based on the genetic algorithm (GA) and steepest descent method (SDM), this paper proposes a hybrid algorithm for the learning of neural networks to identify chaotic systems. The systems in question are the logistic map and the Duffing equation. Different identification schemes are used to identify both the logistic map and the Duffing equation, respectively. Simulation results show that our hybrid algorithm is more efficient than that of other methods

Robust synchronization of delayed neural networks based on adaptive control and parameters identification

International Nuclear Information System (INIS)

Zhou Jin; Chen Tianping; Xiang Lan

2006-01-01

This paper investigates synchronization dynamics of delayed neural networks with all the parameters unknown. By combining the adaptive control and linear feedback with the updated law, some simple yet generic criteria for determining the robust synchronization based on the parameters identification of uncertain chaotic delayed neural networks are derived by using the invariance principle of functional differential equations. It is shown that the approaches developed here further extend the ideas and techniques presented in recent literature, and they are also simple to implement in practice. Furthermore, the theoretical results are applied to a typical chaotic delayed Hopfied neural networks, and numerical simulation also demonstrate the effectiveness and feasibility of the proposed technique

A neural network device for on-line particle identification in cosmic ray experiments

International Nuclear Information System (INIS)

Scrimaglio, R.; Finetti, N.; D'Altorio, L.; Rantucci, E.; Raso, M.; Segreto, E.; Tassoni, A.; Cardarilli, G.C.

2004-01-01

On-line particle identification is one of the main goals of many experiments in space both for rare event studies and for optimizing measurements along the orbital trajectory. Neural networks can be a useful tool for signal processing and real time data analysis in such experiments. In this document we report on the performances of a programmable neural device which was developed in VLSI analog/digital technology. Neurons and synapses were accomplished by making use of Operational Transconductance Amplifier (OTA) structures. In this paper we report on the results of measurements performed in order to verify the agreement of the characteristic curves of each elementary cell with simulations and on the device performances obtained by implementing simple neural structures on the VLSI chip. A feed-forward neural network (Multi-Layer Perceptron, MLP) was implemented on the VLSI chip and trained to identify particles by processing the signals of two-dimensional position-sensitive Si detectors. The radiation monitoring device consisted of three double-sided silicon strip detectors. From the analysis of a set of simulated data it was found that the MLP implemented on the neural device gave results comparable with those obtained with the standard method of analysis confirming that the implemented neural network could be employed for real time particle identification

Multilevel Bloom Filters for P2P Flows Identification Based on Cluster Analysis in Wireless Mesh Network

Directory of Open Access Journals (Sweden)

Xia-an Bi

2015-01-01

Full Text Available With the development of wireless mesh networks and distributed computing, lots of new P2P services have been deployed and enrich the Internet contents and applications. The rapid growth of P2P flows brings great pressure to the regular network operation. So the effective flow identification and management of P2P applications become increasingly urgent. In this paper, we build a multilevel bloom filters data structure to identify the P2P flows through researches on the locality characteristics of P2P flows. Different level structure stores different numbers of P2P flow rules. According to the characteristics values of the P2P flows, we adjust the parameters of the data structure of bloom filters. The searching steps of the scheme traverse from the first level to the last level. Compared with the traditional algorithms, our method solves the drawbacks of previous schemes. The simulation results demonstrate that our algorithm effectively enhances the performance of P2P flows identification. Then we deploy our flow identification algorithm in the traffic monitoring sensors which belong to the network traffic monitoring system at the export link in the campus network. In the real environment, the experiment results demonstrate that our algorithm has a fast speed and high accuracy to identify the P2P flows; therefore, it is suitable for actual deployment.

Response-only modal identification using random decrement algorithm with time-varying threshold level

International Nuclear Information System (INIS)

Lin, Chang Sheng; Tseng, Tse Chuan

2014-01-01

Modal Identification from response data only is studied for structural systems under nonstationary ambient vibration. The topic of this paper is the estimation of modal parameters from nonstationary ambient vibration data by applying the random decrement algorithm with time-varying threshold level. In the conventional random decrement algorithm, the threshold level for evaluating random dec signatures is defined as the standard deviation value of response data of the reference channel. The distortion of random dec signatures may be, however, induced by the error involved in noise from the original response data in practice. To improve the accuracy of identification, a modification of the sampling procedure in random decrement algorithm is proposed for modal-parameter identification from the nonstationary ambient response data. The time-varying threshold level is presented for the acquisition of available sample time history to perform averaging analysis, and defined as the temporal root-mean-square function of structural response, which can appropriately describe a wide variety of nonstationary behaviors in reality, such as the time-varying amplitude (variance) of a nonstationary process in a seismic record. Numerical simulations confirm the validity and robustness of the proposed modal-identification method from nonstationary ambient response data under noisy conditions.

Analysis of Network Topologies Underlying Ethylene Growth Response Kinetics

Directory of Open Access Journals (Sweden)

Aaron M. Prescott

2016-08-01

Full Text Available Most models for ethylene signaling involve a linear pathway. However, measurements of seedling growth kinetics when ethylene is applied and removed have resulted in more complex network models that include coherent feedforward, negative feedback, and positive feedback motifs. However, the dynamical responses of the proposed networks have not been explored in a quantitative manner. Here, we explore (i whether any of the proposed models are capable of producing growth-response behaviors consistent with experimental observations and (ii what mechanistic roles various parts of the network topologies play in ethylene signaling. To address this, we used computational methods to explore two general network topologies: The first contains a coherent feedforward loop that inhibits growth and a negative feedback from growth onto itself (CFF/NFB. In the second, ethylene promotes the cleavage of EIN2, with the product of the cleavage inhibiting growth and promoting the production of EIN2 through a positive feedback loop (PFB. Since few network parameters for ethylene signaling are known in detail, we used an evolutionary algorithm to explore sets of parameters that produce behaviors similar to experimental growth response kinetics of both wildtype and mutant seedlings. We generated a library of parameter sets by independently running the evolutionary algorithm many times. Both network topologies produce behavior consistent with experimental observations and analysis of the parameter sets allows us to identify important network interactions and parameter constraints. We additionally screened these parameter sets for growth recovery in the presence of sub-saturating ethylene doses, which is an experimentally-observed property that emerges in some of the evolved parameter sets. Finally, we probed simplified networks maintaining key features of the CFF/NFB and PFB topologies. From this, we verified observations drawn from the larger networks about mechanisms

Analysis of Network Topologies Underlying Ethylene Growth Response Kinetics.

Science.gov (United States)

Prescott, Aaron M; McCollough, Forest W; Eldreth, Bryan L; Binder, Brad M; Abel, Steven M

2016-01-01

Most models for ethylene signaling involve a linear pathway. However, measurements of seedling growth kinetics when ethylene is applied and removed have resulted in more complex network models that include coherent feedforward, negative feedback, and positive feedback motifs. The dynamical responses of the proposed networks have not been explored in a quantitative manner. Here, we explore (i) whether any of the proposed models are capable of producing growth-response behaviors consistent with experimental observations and (ii) what mechanistic roles various parts of the network topologies play in ethylene signaling. To address this, we used computational methods to explore two general network topologies: The first contains a coherent feedforward loop that inhibits growth and a negative feedback from growth onto itself (CFF/NFB). In the second, ethylene promotes the cleavage of EIN2, with the product of the cleavage inhibiting growth and promoting the production of EIN2 through a positive feedback loop (PFB). Since few network parameters for ethylene signaling are known in detail, we used an evolutionary algorithm to explore sets of parameters that produce behaviors similar to experimental growth response kinetics of both wildtype and mutant seedlings. We generated a library of parameter sets by independently running the evolutionary algorithm many times. Both network topologies produce behavior consistent with experimental observations, and analysis of the parameter sets allows us to identify important network interactions and parameter constraints. We additionally screened these parameter sets for growth recovery in the presence of sub-saturating ethylene doses, which is an experimentally-observed property that emerges in some of the evolved parameter sets. Finally, we probed simplified networks maintaining key features of the CFF/NFB and PFB topologies. From this, we verified observations drawn from the larger networks about mechanisms underlying ethylene

Reconstructing a Network of Stress-Response Regulators via Dynamic System Modeling of Gene Regulation

Directory of Open Access Journals (Sweden)

Wei-Sheng Wu

2008-01-01

Full Text Available Unicellular organisms such as yeasts have evolved mechanisms to respond to environmental stresses by rapidly reorganizing the gene expression program. Although many stress-response genes in yeast have been discovered by DNA microarrays, the stress-response transcription factors (TFs that regulate these stress-response genes remain to be investigated. In this study, we use a dynamic system model of gene regulation to describe the mechanism of how TFs may control a gene’s expression. Then, based on the dynamic system model, we develop the Stress Regulator Identification Algorithm (SRIA to identify stress-response TFs for six kinds of stresses. We identified some general stress-response TFs that respond to various stresses and some specific stress-response TFs that respond to one specifi c stress. The biological significance of our findings is validated by the literature. We found that a small number of TFs is probably suffi cient to control a wide variety of expression patterns in yeast under different stresses. Two implications can be inferred from this observation. First, the response mechanisms to different stresses may have a bow-tie structure. Second, there may be regulatory cross-talks among different stress responses. In conclusion, this study proposes a network of stress-response regulators and the details of their actions.

Identification and prediction of dynamic systems using an interactively recurrent self-evolving fuzzy neural network.

Science.gov (United States)

Lin, Yang-Yin; Chang, Jyh-Yeong; Lin, Chin-Teng

2013-02-01

This paper presents a novel recurrent fuzzy neural network, called an interactively recurrent self-evolving fuzzy neural network (IRSFNN), for prediction and identification of dynamic systems. The recurrent structure in an IRSFNN is formed as an external loops and internal feedback by feeding the rule firing strength of each rule to others rules and itself. The consequent part in the IRSFNN is composed of a Takagi-Sugeno-Kang (TSK) or functional-link-based type. The proposed IRSFNN employs a functional link neural network (FLNN) to the consequent part of fuzzy rules for promoting the mapping ability. Unlike a TSK-type fuzzy neural network, the FLNN in the consequent part is a nonlinear function of input variables. An IRSFNNs learning starts with an empty rule base and all of the rules are generated and learned online through a simultaneous structure and parameter learning. An on-line clustering algorithm is effective in generating fuzzy rules. The consequent update parameters are derived by a variable-dimensional Kalman filter algorithm. The premise and recurrent parameters are learned through a gradient descent algorithm. We test the IRSFNN for the prediction and identification of dynamic plants and compare it to other well-known recurrent FNNs. The proposed model obtains enhanced performance results.

Application of neural networks to connectional expert system for identification of transients in nuclear power plants

International Nuclear Information System (INIS)

Cheon, Se Woo; Kim, Wan Joo; Chang, Soon Heung; Roh, Myung Sub

1991-01-01

The Back-propagation Neural Network (BPN) algorithm is applied to connectionist expert system for the identification of BWR transients. Several powerful features of neural network-based expert systems over traditional rule-based expert systems are described. The general mapping capability of the neural networks enables to identify transients easily. A number of case studies were performed with emphasis on the applicability of the neural networks to the diagnostic domain. It is revealed that the BPN algorithm can identify transients properly, even when incomplete or untrained symptoms are given. It is also shown that multiple transients are easily identified

Jimena: efficient computing and system state identification for genetic regulatory networks.

Science.gov (United States)

Karl, Stefan; Dandekar, Thomas

2013-10-11

Boolean networks capture switching behavior of many naturally occurring regulatory networks. For semi-quantitative modeling, interpolation between ON and OFF states is necessary. The high degree polynomial interpolation of Boolean genetic regulatory networks (GRNs) in cellular processes such as apoptosis or proliferation allows for the modeling of a wider range of node interactions than continuous activator-inhibitor models, but suffers from scaling problems for networks which contain nodes with more than ~10 inputs. Many GRNs from literature or new gene expression experiments exceed those limitations and a new approach was developed. (i) As a part of our new GRN simulation framework Jimena we introduce and setup Boolean-tree-based data structures; (ii) corresponding algorithms greatly expedite the calculation of the polynomial interpolation in almost all cases, thereby expanding the range of networks which can be simulated by this model in reasonable time. (iii) Stable states for discrete models are efficiently counted and identified using binary decision diagrams. As application example, we show how system states can now be sampled efficiently in small up to large scale hormone disease networks (Arabidopsis thaliana development and immunity, pathogen Pseudomonas syringae and modulation by cytokinins and plant hormones). Jimena simulates currently available GRNs about 10-100 times faster than the previous implementation of the polynomial interpolation model and even greater gains are achieved for large scale-free networks. This speed-up also facilitates a much more thorough sampling of continuous state spaces which may lead to the identification of new stable states. Mutants of large networks can be constructed and analyzed very quickly enabling new insights into network robustness and behavior.

Impulse response identification with deterministic inputs using non-parametric methods

International Nuclear Information System (INIS)

Bhargava, U.K.; Kashyap, R.L.; Goodman, D.M.

1985-01-01

This paper addresses the problem of impulse response identification using non-parametric methods. Although the techniques developed herein apply to the truncated, untruncated, and the circulant models, we focus on the truncated model which is useful in certain applications. Two methods of impulse response identification will be presented. The first is based on the minimization of the C/sub L/ Statistic, which is an estimate of the mean-square prediction error; the second is a Bayesian approach. For both of these methods, we consider the effects of using both the identity matrix and the Laplacian matrix as weights on the energy in the impulse response. In addition, we present a method for estimating the effective length of the impulse response. Estimating the length is particularly important in the truncated case. Finally, we develop a method for estimating the noise variance at the output. Often, prior information on the noise variance is not available, and a good estimate is crucial to the success of estimating the impulse response with a nonparametric technique

Orientation selective neural network for cosmic muon identification

International Nuclear Information System (INIS)

Abramowicz, H.; Tel Aviv Univ.; Horn, D.; Naftaly, U.; Sahar-Pikielny, C.

1997-01-01

We discuss a novel method for identification of a linear pattern of pixels on a two-dimensional grid. Motivated by principles employed by the visual cortex, we construct orientation selective neurons in a neural network that performs this task. The method is then applied to a sample of data collected with the ZEUS detector at HERA in order to identify cosmic muons that leave a linear pattern of signals in the segmented uranium-scintillator calorimeter. A two dimensional representation of the relevant part of the detector is used. The algorithm performs well in the presence of noise and pixels with limited efficiency. Given its architecture, this system becomes a good candidate for fast pattern recognition in parallel processing devices. (orig.)

A neural network model for non invasive subsurface stratigraphic identification

International Nuclear Information System (INIS)

Sullivan, John M. Jr.; Ludwig, Reinhold; Lai Qiang

2000-01-01

Ground-Penetrating Radar (GRP) is a powerful tool to examine the stratigraphy below ground surface for remote sensing. Increasingly GPR has also found applications in microwave NDE as an interrogation tool to assess dielectric layers. Unfortunately, GPR data is characterized by a high degree of uncertainty and natural physical ambiguity. Robust decomposition routines are sparse for this application. We have developed a hierarchical set of neural network modules which split the task of layer profiling into consecutive stages. Successful GPR profiling of the subsurface stratigraphy is of key importance for many remote sensing applications including microwave NDE. Neural network modules were designed to accomplish the two main processing goals of recognizing the 'subsurface pattern' followed by the identification of the depths of the subsurface layers like permafrost, groundwater table, and bedrock. We used an adaptive transform technique to transform raw GPR data into a small feature vector containing the most representative and discriminative features of the signal. This information formed the input for the neural network processing units. This strategy reduced the number of required training samples for the neural network by orders of magnitude. The entire processing system was trained using the adaptive transformed feature vector inputs and tested with real measured GPR data. The successful results of this system establishes the feasibility the feasibility of delineating subsurface layering nondestructively

Identification of human disease genes from interactome network using graphlet interaction.

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Xiao-Dong Wang

Full Text Available Identifying genes related to human diseases, such as cancer and cardiovascular disease, etc., is an important task in biomedical research because of its applications in disease diagnosis and treatment. Interactome networks, especially protein-protein interaction networks, had been used to disease genes identification based on the hypothesis that strong candidate genes tend to closely relate to each other in some kinds of measure on the network. We proposed a new measure to analyze the relationship between network nodes which was called graphlet interaction. The graphlet interaction contained 28 different isomers. The results showed that the numbers of the graphlet interaction isomers between disease genes in interactome networks were significantly larger than random picked genes, while graphlet signatures were not. Then, we designed a new type of score, based on the network properties, to identify disease genes using graphlet interaction. The genes with higher scores were more likely to be disease genes, and all candidate genes were ranked according to their scores. Then the approach was evaluated by leave-one-out cross-validation. The precision of the current approach achieved 90% at about 10% recall, which was apparently higher than the previous three predominant algorithms, random walk, Endeavour and neighborhood based method. Finally, the approach was applied to predict new disease genes related to 4 common diseases, most of which were identified by other independent experimental researches. In conclusion, we demonstrate that the graphlet interaction is an effective tool to analyze the network properties of disease genes, and the scores calculated by graphlet interaction is more precise in identifying disease genes.

Identification of Human Disease Genes from Interactome Network Using Graphlet Interaction

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Yang, Lun; Wei, Dong-Qing; Qi, Ying-Xin; Jiang, Zong-Lai

2014-01-01

Identifying genes related to human diseases, such as cancer and cardiovascular disease, etc., is an important task in biomedical research because of its applications in disease diagnosis and treatment. Interactome networks, especially protein-protein interaction networks, had been used to disease genes identification based on the hypothesis that strong candidate genes tend to closely relate to each other in some kinds of measure on the network. We proposed a new measure to analyze the relationship between network nodes which was called graphlet interaction. The graphlet interaction contained 28 different isomers. The results showed that the numbers of the graphlet interaction isomers between disease genes in interactome networks were significantly larger than random picked genes, while graphlet signatures were not. Then, we designed a new type of score, based on the network properties, to identify disease genes using graphlet interaction. The genes with higher scores were more likely to be disease genes, and all candidate genes were ranked according to their scores. Then the approach was evaluated by leave-one-out cross-validation. The precision of the current approach achieved 90% at about 10% recall, which was apparently higher than the previous three predominant algorithms, random walk, Endeavour and neighborhood based method. Finally, the approach was applied to predict new disease genes related to 4 common diseases, most of which were identified by other independent experimental researches. In conclusion, we demonstrate that the graphlet interaction is an effective tool to analyze the network properties of disease genes, and the scores calculated by graphlet interaction is more precise in identifying disease genes. PMID:24465923

Functional neural networks underlying response inhibition in adolescents and adults.

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Stevens, Michael C; Kiehl, Kent A; Pearlson, Godfrey D; Calhoun, Vince D

2007-07-19

This study provides the first description of neural network dynamics associated with response inhibition in healthy adolescents and adults. Functional and effective connectivity analyses of whole brain hemodynamic activity elicited during performance of a Go/No-Go task were used to identify functionally integrated neural networks and characterize their causal interactions. Three response inhibition circuits formed a hierarchical, inter-dependent system wherein thalamic modulation of input to premotor cortex by fronto-striatal regions led to response suppression. Adolescents differed from adults in the degree of network engagement, regional fronto-striatal-thalamic connectivity, and network dynamics. We identify and characterize several age-related differences in the function of neural circuits that are associated with behavioral performance changes across adolescent development.

The impact of measurement errors in the identification of regulatory networks

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Sato João R

2009-12-01

Full Text Available Abstract Background There are several studies in the literature depicting measurement error in gene expression data and also, several others about regulatory network models. However, only a little fraction describes a combination of measurement error in mathematical regulatory networks and shows how to identify these networks under different rates of noise. Results This article investigates the effects of measurement error on the estimation of the parameters in regulatory networks. Simulation studies indicate that, in both time series (dependent and non-time series (independent data, the measurement error strongly affects the estimated parameters of the regulatory network models, biasing them as predicted by the theory. Moreover, when testing the parameters of the regulatory network models, p-values computed by ignoring the measurement error are not reliable, since the rate of false positives are not controlled under the null hypothesis. In order to overcome these problems, we present an improved version of the Ordinary Least Square estimator in independent (regression models and dependent (autoregressive models data when the variables are subject to noises. Moreover, measurement error estimation procedures for microarrays are also described. Simulation results also show that both corrected methods perform better than the standard ones (i.e., ignoring measurement error. The proposed methodologies are illustrated using microarray data from lung cancer patients and mouse liver time series data. Conclusions Measurement error dangerously affects the identification of regulatory network models, thus, they must be reduced or taken into account in order to avoid erroneous conclusions. This could be one of the reasons for high biological false positive rates identified in actual regulatory network models.

Identification, characterization and expression analysis of pigeonpea miRNAs in response to Fusarium wilt.

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Hussain, Khalid; Mungikar, Kanak; Kulkarni, Abhijeet; Kamble, Avinash

2018-05-05

Upon confrontation with unfavourable conditions, plants invoke a very complex set of biochemical and physiological reactions and alter gene expression patterns to combat the situations. MicroRNAs (miRNAs), a class of small non-coding RNA, contribute extensively in regulation of gene expression through translation inhibition or degradation of their target mRNAs during such conditions. Therefore, identification of miRNAs and their targets holds importance in understanding the regulatory networks triggered during stress. Structure and sequence similarity based in silico prediction of miRNAs in Cajanus cajan L. (Pigeonpea) draft genome sequence has been carried out earlier. These annotations also appear in related GenBank genome sequence entries. However, there are no reports available on context dependent miRNA expression and their targets in pigeonpea. Therefore, in the present study we addressed these questions computationally, using pigeonpea EST sequence information. We identified five novel pigeonpea miRNA precursors, their mature forms and targets. Interestingly, only one of these miRNAs (miR169i-3p) was identified earlier in draft genome sequence. We then validated expression of these miRNAs, experimentally. It was also observed that these miRNAs show differential expression patterns in response to Fusarium inoculation indicating their biotic stress responsive nature. Overall these results will help towards better understanding the regulatory network of defense during pigeonpea -pathogen interactions and role of miRNAs in the process. Copyright © 2018 Elsevier B.V. All rights reserved.

Identification-based chaos control via backstepping design using self-organizing fuzzy neural networks

International Nuclear Information System (INIS)

Peng Yafu; Hsu, C.-F.

2009-01-01

This paper proposes an identification-based adaptive backstepping control (IABC) for the chaotic systems. The IABC system is comprised of a neural backstepping controller and a robust compensation controller. The neural backstepping controller containing a self-organizing fuzzy neural network (SOFNN) identifier is the principal controller, and the robust compensation controller is designed to dispel the effect of minimum approximation error introduced by the SOFNN identifier. The SOFNN identifier is used to online estimate the chaotic dynamic function with structure and parameter learning phases of fuzzy neural network. The structure learning phase consists of the growing and pruning of fuzzy rules; thus the SOFNN identifier can avoid the time-consuming trial-and-error tuning procedure for determining the neural structure of fuzzy neural network. The parameter learning phase adjusts the interconnection weights of neural network to achieve favorable approximation performance. Finally, simulation results verify that the proposed IABC can achieve favorable tracking performance.

NIRFaceNet: A Convolutional Neural Network for Near-Infrared Face Identification

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Min Peng

2016-10-01

Full Text Available Near-infrared (NIR face recognition has attracted increasing attention because of its advantage of illumination invariance. However, traditional face recognition methods based on NIR are designed for and tested in cooperative-user applications. In this paper, we present a convolutional neural network (CNN for NIR face recognition (specifically face identification in non-cooperative-user applications. The proposed NIRFaceNet is modified from GoogLeNet, but has a more compact structure designed specifically for the Chinese Academy of Sciences Institute of Automation (CASIA NIR database and can achieve higher identification rates with less training time and less processing time. The experimental results demonstrate that NIRFaceNet has an overall advantage compared to other methods in the NIR face recognition domain when image blur and noise are present. The performance suggests that the proposed NIRFaceNet method may be more suitable for non-cooperative-user applications.

Differential Neural Networks for Identification and Filtering in Nonlinear Dynamic Games

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Emmanuel García

2014-01-01

Full Text Available This paper deals with the problem of identifying and filtering a class of continuous-time nonlinear dynamic games (nonlinear differential games subject to additive and undesired deterministic perturbations. Moreover, the mathematical model of this class is completely unknown with the exception of the control actions of each player, and even though the deterministic noises are known, their power (or their effect is not. Therefore, two differential neural networks are designed in order to obtain a feedback (perfect state information pattern for the mentioned class of games. In this way, the stability conditions for two state identification errors and for a filtering error are established, the upper bounds of these errors are obtained, and two new learning laws for each neural network are suggested. Finally, an illustrating example shows the applicability of this approach.

Shared beliefs enhance shared feelings: religious/irreligious identifications modulate empathic neural responses.

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Huang, Siyuan; Han, Shihui

2014-01-01

Recent neuroimaging research has revealed stronger empathic neural responses to same-race compared to other-race individuals. Is the in-group favouritism in empathic neural responses specific to race identification or a more general effect of social identification-including those based on religious/irreligious beliefs? The present study investigated whether and how intergroup relationships based on religious/irreligious identifications modulate empathic neural responses to others' pain expressions. We recorded event-related brain potentials from Chinese Christian and atheist participants while they perceived pain or neutral expressions of Chinese faces that were marked as being Christians or atheists. We found that both Christian and atheist participants showed stronger neural activity to pain (versus neutral) expressions at 132-168 ms and 200-320 ms over the frontal region to those with the same (versus different) religious/irreligious beliefs. The in-group favouritism in empathic neural responses was also evident in a later time window (412-612 ms) over the central/parietal regions in Christian but not in atheist participants. Our results indicate that the intergroup relationship based on shared beliefs, either religious or irreligious, can lead to in-group favouritism in empathy for others' suffering.

Joint OSNR monitoring and modulation format identification in digital coherent receivers using deep neural networks.

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Khan, Faisal Nadeem; Zhong, Kangping; Zhou, Xian; Al-Arashi, Waled Hussein; Yu, Changyuan; Lu, Chao; Lau, Alan Pak Tao

2017-07-24

We experimentally demonstrate the use of deep neural networks (DNNs) in combination with signals' amplitude histograms (AHs) for simultaneous optical signal-to-noise ratio (OSNR) monitoring and modulation format identification (MFI) in digital coherent receivers. The proposed technique automatically extracts OSNR and modulation format dependent features of AHs, obtained after constant modulus algorithm (CMA) equalization, and exploits them for the joint estimation of these parameters. Experimental results for 112 Gbps polarization-multiplexed (PM) quadrature phase-shift keying (QPSK), 112 Gbps PM 16 quadrature amplitude modulation (16-QAM), and 240 Gbps PM 64-QAM signals demonstrate OSNR monitoring with mean estimation errors of 1.2 dB, 0.4 dB, and 1 dB, respectively. Similarly, the results for MFI show 100% identification accuracy for all three modulation formats. The proposed technique applies deep machine learning algorithms inside standard digital coherent receiver and does not require any additional hardware. Therefore, it is attractive for cost-effective multi-parameter estimation in next-generation elastic optical networks (EONs).

Modal Identification from Ambient Responses using Frequency Domain Decomposition

DEFF Research Database (Denmark)

Brincker, Rune; Zhang, L.; Andersen, P.

2000-01-01

In this paper a new frequency domain technique is introduced for the modal identification from ambient responses, ie. in the case where the modal parameters must be estimated without knowing the input exciting the system. By its user friendliness the technique is closely related to the classical ...

Exploring the Neural Basis of Avatar Identification in Pathological Internet Gamers and of Self-Reflection in Pathological Social Network Users.

Science.gov (United States)

Leménager, Tagrid; Dieter, Julia; Hill, Holger; Hoffmann, Sabine; Reinhard, Iris; Beutel, Martin; Vollstädt-Klein, Sabine; Kiefer, Falk; Mann, Karl

2016-09-01

Background and aims Internet gaming addiction appears to be related to self-concept deficits and increased angular gyrus (AG)-related identification with one's avatar. For increased social network use, a few existing studies suggest striatal-related positive social feedback as an underlying factor. However, whether an impaired self-concept and its reward-based compensation through the online presentation of an idealized version of the self are related to pathological social network use has not been investigated yet. We aimed to compare different stages of pathological Internet game and social network use to explore the neural basis of avatar and self-identification in addictive use. Methods About 19 pathological Internet gamers, 19 pathological social network users, and 19 healthy controls underwent functional magnetic resonance imaging while completing a self-retrieval paradigm, asking participants to rate the degree to which various self-concept-related characteristics described their self, ideal, and avatar. Self-concept-related characteristics were also psychometrically assessed. Results Psychometric testing indicated that pathological Internet gamers exhibited higher self-concept deficits generally, whereas pathological social network users exhibit deficits in emotion regulation only. We observed left AG hyperactivations in Internet gamers during avatar reflection and a correlation with symptom severity. Striatal hypoactivations during self-reflection (vs. ideal reflection) were observed in social network users and were correlated with symptom severity. Discussion and conclusion Internet gaming addiction appears to be linked to increased identification with one's avatar, evidenced by high left AG activations in pathological Internet gamers. Addiction to social networks seems to be characterized by emotion regulation deficits, reflected by reduced striatal activation during self-reflection compared to during ideal reflection.

Exploring the Neural Basis of Avatar Identification in Pathological Internet Gamers and of Self-Reflection in Pathological Social Network Users

Science.gov (United States)

Leménager, Tagrid; Dieter, Julia; Hill, Holger; Hoffmann, Sabine; Reinhard, Iris; Beutel, Martin; Vollstädt-Klein, Sabine; Kiefer, Falk; Mann, Karl

2016-01-01

Background and aims Internet gaming addiction appears to be related to self-concept deficits and increased angular gyrus (AG)-related identification with one’s avatar. For increased social network use, a few existing studies suggest striatal-related positive social feedback as an underlying factor. However, whether an impaired self-concept and its reward-based compensation through the online presentation of an idealized version of the self are related to pathological social network use has not been investigated yet. We aimed to compare different stages of pathological Internet game and social network use to explore the neural basis of avatar and self-identification in addictive use. Methods About 19 pathological Internet gamers, 19 pathological social network users, and 19 healthy controls underwent functional magnetic resonance imaging while completing a self-retrieval paradigm, asking participants to rate the degree to which various self-concept-related characteristics described their self, ideal, and avatar. Self-concept-related characteristics were also psychometrically assessed. Results Psychometric testing indicated that pathological Internet gamers exhibited higher self-concept deficits generally, whereas pathological social network users exhibit deficits in emotion regulation only. We observed left AG hyperactivations in Internet gamers during avatar reflection and a correlation with symptom severity. Striatal hypoactivations during self-reflection (vs. ideal reflection) were observed in social network users and were correlated with symptom severity. Discussion and conclusion Internet gaming addiction appears to be linked to increased identification with one’s avatar, evidenced by high left AG activations in pathological Internet gamers. Addiction to social networks seems to be characterized by emotion regulation deficits, reflected by reduced striatal activation during self-reflection compared to during ideal reflection. PMID:27415603

Identification of a Typical CSTR Using Optimal Focused Time Lagged Recurrent Neural Network Model with Gamma Memory Filter

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S. N. Naikwad

2009-01-01

Full Text Available A focused time lagged recurrent neural network (FTLR NN with gamma memory filter is designed to learn the subtle complex dynamics of a typical CSTR process. Continuous stirred tank reactor exhibits complex nonlinear operations where reaction is exothermic. It is noticed from literature review that process control of CSTR using neuro-fuzzy systems was attempted by many, but optimal neural network model for identification of CSTR process is not yet available. As CSTR process includes temporal relationship in the input-output mappings, time lagged recurrent neural network is particularly used for identification purpose. The standard back propagation algorithm with momentum term has been proposed in this model. The various parameters like number of processing elements, number of hidden layers, training and testing percentage, learning rule and transfer function in hidden and output layer are investigated on the basis of performance measures like MSE, NMSE, and correlation coefficient on testing data set. Finally effects of different norms are tested along with variation in gamma memory filter. It is demonstrated that dynamic NN model has a remarkable system identification capability for the problems considered in this paper. Thus FTLR NN with gamma memory filter can be used to learn underlying highly nonlinear dynamics of the system, which is a major contribution of this paper.

Genetic and neural approaches to nuclear transient identification

International Nuclear Information System (INIS)

Almeida, Jose Carlos Soares de; Mol, Antonio Carlos de Abreu; Pereira, Claudio Marcio Nascimento Abreu; Lapa, Celso Marcelo Franklin

2005-01-01

This work presents two approaches for pattern recognition to the same set of reactor signals. The first one describes a possibilistic approach optimized by genetic algorithm. The use of a possibilistic classification provides a natural and consistent classification rules, leading naturally to a good heuristic to handle the 'don't know' response, in case of unrecognized transient, which is fairly desirable in transient classification systems where safety is critical, since wrong or not reliable classifications can be catastrophic. Application of the proposed approach to a nuclear transient identification problem reveals good capability of the genetic algorithm in learning optimized possibilistic classification rules for efficient diagnosis including 'don't know' response. The second one uses two multilayer neural networks (NN). The first NN is responsible for the dynamic identification. This NN uses, as input, a short set (in a moving time window) of recent measurements of each variable avoiding the necessity of using starting events. The second NN is used to validate the instantaneous identification (from the first net) through the validation of each variable. This net is responsible for allowing the system to provide a 'don't know' response. In order to validate both methods, a Nuclear Power Plant (NPP) transient identification problem comprising postulated accidents, simulated for a pressurized water reactor, was proposed in the validation process it has been considered noisy data in order to evaluate the method robustness. Obtained results reveal the ability of the methods in dealing with both dynamic identification of transients and correct 'don't know' response. (author)

Hypertensive retinopathy identification through retinal fundus image using backpropagation neural network

Science.gov (United States)

Syahputra, M. F.; Amalia, C.; Rahmat, R. F.; Abdullah, D.; Napitupulu, D.; Setiawan, M. I.; Albra, W.; Nurdin; Andayani, U.

2018-03-01

Hypertension or high blood pressure can cause damage of blood vessels in the retina of eye called hypertensive retinopathy (HR). In the event Hypertension, it will cause swelling blood vessels and a decrese in retina performance. To detect HR in patients body, it is usually performed through physical examination of opthalmoscope which is still conducted manually by an ophthalmologist. Certainly, in such a manual manner, takes a ong time for a doctor to detetct HR on aa patient based on retina fundus iamge. To overcome ths problem, a method is needed to identify the image of retinal fundus automatically. In this research, backpropagation neural network was used as a method for retinal fundus identification. The steps performed prior to identification were pre-processing (green channel, contrast limited adapative histogram qualization (CLAHE), morphological close, background exclusion, thresholding and connected component analysis), feature extraction using zoning. The results show that the proposed method is able to identify retinal fundus with an accuracy of 95% with maximum epoch of 1500.

Horizontal two phase flow pattern identification by neural networks

International Nuclear Information System (INIS)

Crivelaro, Kelen Cristina Oliveira; Seleghim Junior, Paulo; Hervieu, Eric

1999-01-01

A multiphase fluid can flow according to several flow regimes. The problem associated with multiphase systems are basically related to the behavior of macroscopic parameters, such as pressure drop, thermal exchanges and so on, and their strong correlation to the flow regime. From the industrial applications point of view, the safety and longevity of equipment and systems can only be assured when they work according to the flow regimes for which they were designed to. This implies in the need to diagnose flow regimes in real time. The automatic diagnosis of flow regimes represents an objective of extreme importance, mainly for applications on nuclear and petrochemical industries. In this work, a neural network is used in association to a probe of direct visualization for the identification of a gas-liquid flow horizontal regimes, developed in an experimental circuit. More specifically, the signals produced by the probe are used to compose a qualitative image of the flow, which is promptly sent to the network for the recognition of the regimes. Results are presented for different transitions among the flow regimes, which demonstrate the extremely satisfactory performance of the diagnosis system. (author)

Modal Identification from Ambient Responses Using Frequency Domain Decomposition

DEFF Research Database (Denmark)

Brincker, Rune; Zhang, Lingmi; Andersen, Palle

2000-01-01

In this paper a new frequency domain technique is introduced for the modal identification from ambient responses, i.e. in the case where the modal parameters must be estimated without knowing the input exciting the system. By its user friendliness the technique is closely related to the classical...

Local and global responses in complex gene regulation networks

Science.gov (United States)

Tsuchiya, Masa; Selvarajoo, Kumar; Piras, Vincent; Tomita, Masaru; Giuliani, Alessandro

2009-04-01

An exacerbated sensitivity to apparently minor stimuli and a general resilience of the entire system stay together side-by-side in biological systems. This apparent paradox can be explained by the consideration of biological systems as very strongly interconnected network systems. Some nodes of these networks, thanks to their peculiar location in the network architecture, are responsible for the sensitivity aspects, while the large degree of interconnection is at the basis of the resilience properties of the system. One relevant feature of the high degree of connectivity of gene regulation networks is the emergence of collective ordered phenomena influencing the entire genome and not only a specific portion of transcripts. The great majority of existing gene regulation models give the impression of purely local ‘hard-wired’ mechanisms disregarding the emergence of global ordered behavior encompassing thousands of genes while the general, genome wide, aspects are less known. Here we address, on a data analysis perspective, the discrimination between local and global scale regulations, this goal was achieved by means of the examination of two biological systems: innate immune response in macrophages and oscillating growth dynamics in yeast. Our aim was to reconcile the ‘hard-wired’ local view of gene regulation with a global continuous and scalable one borrowed from statistical physics. This reconciliation is based on the network paradigm in which the local ‘hard-wired’ activities correspond to the activation of specific crucial nodes in the regulation network, while the scalable continuous responses can be equated to the collective oscillations of the network after a perturbation.

Natural semantic networks in the Social Representations of Responsibility

Directory of Open Access Journals (Sweden)

Humberto Emilio Aguilera Arévalo

2010-07-01

Full Text Available The study of social representations of responsibility is a fundamental construct of the present democratic societies. Different empirical techniques such as natural semantic networks can significantly improve the approach to the object of study than the traditional associationist techniques. The present study examines natural semantic networks of six stimulus words with respect to responsibility and irresponsibility at the individual, in group and out group level in a sample of Guatemalan students.

Modeling and control of magnetorheological fluid dampers using neural networks

Science.gov (United States)

Wang, D. H.; Liao, W. H.

2005-02-01

Due to the inherent nonlinear nature of magnetorheological (MR) fluid dampers, one of the challenging aspects for utilizing these devices to achieve high system performance is the development of accurate models and control algorithms that can take advantage of their unique characteristics. In this paper, the direct identification and inverse dynamic modeling for MR fluid dampers using feedforward and recurrent neural networks are studied. The trained direct identification neural network model can be used to predict the damping force of the MR fluid damper on line, on the basis of the dynamic responses across the MR fluid damper and the command voltage, and the inverse dynamic neural network model can be used to generate the command voltage according to the desired damping force through supervised learning. The architectures and the learning methods of the dynamic neural network models and inverse neural network models for MR fluid dampers are presented, and some simulation results are discussed. Finally, the trained neural network models are applied to predict and control the damping force of the MR fluid damper. Moreover, validation methods for the neural network models developed are proposed and used to evaluate their performance. Validation results with different data sets indicate that the proposed direct identification dynamic model using the recurrent neural network can be used to predict the damping force accurately and the inverse identification dynamic model using the recurrent neural network can act as a damper controller to generate the command voltage when the MR fluid damper is used in a semi-active mode.

A fast identification algorithm for Box-Cox transformation based radial basis function neural network.

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Hong, Xia

2006-07-01

In this letter, a Box-Cox transformation-based radial basis function (RBF) neural network is introduced using the RBF neural network to represent the transformed system output. Initially a fixed and moderate sized RBF model base is derived based on a rank revealing orthogonal matrix triangularization (QR decomposition). Then a new fast identification algorithm is introduced using Gauss-Newton algorithm to derive the required Box-Cox transformation, based on a maximum likelihood estimator. The main contribution of this letter is to explore the special structure of the proposed RBF neural network for computational efficiency by utilizing the inverse of matrix block decomposition lemma. Finally, the Box-Cox transformation-based RBF neural network, with good generalization and sparsity, is identified based on the derived optimal Box-Cox transformation and a D-optimality-based orthogonal forward regression algorithm. The proposed algorithm and its efficacy are demonstrated with an illustrative example in comparison with support vector machine regression.

The cell envelope stress response of Bacillus subtilis: from static signaling devices to dynamic regulatory network.

Science.gov (United States)

Radeck, Jara; Fritz, Georg; Mascher, Thorsten

2017-02-01

The cell envelope stress response (CESR) encompasses all regulatory events that enable a cell to protect the integrity of its envelope, an essential structure of any bacterial cell. The underlying signaling network is particularly well understood in the Gram-positive model organism Bacillus subtilis. It consists of a number of two-component systems (2CS) and extracytoplasmic function σ factors that together regulate the production of both specific resistance determinants and general mechanisms to protect the envelope against antimicrobial peptides targeting the biogenesis of the cell wall. Here, we summarize the current picture of the B. subtilis CESR network, from the initial identification of the corresponding signaling devices to unraveling their interdependence and the underlying regulatory hierarchy within the network. In the course of detailed mechanistic studies, a number of novel signaling features could be described for the 2CSs involved in mediating CESR. This includes a novel class of so-called intramembrane-sensing histidine kinases (IM-HKs), which-instead of acting as stress sensors themselves-are activated via interprotein signal transfer. Some of these IM-HKs are involved in sensing the flux of antibiotic resistance transporters, a unique mechanism of responding to extracellular antibiotic challenge.

"Everybody Identifies with Smokey the Bear": Employee Responses to Newsletter Identification Inducements at the U.S. Forest Service.

Science.gov (United States)

DiSanza, James R.; Bullis, Connie

1999-01-01

Contributes to scholarship on organizational identification (linked to decision making) by examining the identification rhetoric of an in-house newsletter at the U. S. Forest Service and by examining employee responses to newsletter content. Discusses the four responses to the newsletter that were identified: non identification, textual…

Identification of phosphorylation sites in protein kinase A substrates using artificial neural networks and mass spectrometry

DEFF Research Database (Denmark)

Hjerrild, M.; Stensballe, A.; Rasmussen, T.E.

2004-01-01

Protein phosphorylation plays a key role in cell regulation and identification of phosphorylation sites is important for understanding their functional significance. Here, we present an artificial neural network algorithm: NetPhosK (http://www.cbs.dtu.dk/services/NetPhosK/) that predicts protein...

Identification of phosphorylation sites in protein kinase A substrates using artificial neural networks and mass spectrometry

DEFF Research Database (Denmark)

Hjerrild, Majbrit; Stensballe, Allan; Rasmussen, Thomas E

2011-01-01

Protein phosphorylation plays a key role in cell regulation and identification of phosphorylation sites is important for understanding their functional significance. Here, we present an artificial neural network algorithm: NetPhosK (http://www.cbs.dtu.dk/services/NetPhosK/) that predicts protein...

Topologically determined optimal stochastic resonance responses of spatially embedded networks

International Nuclear Information System (INIS)

Gosak, Marko; Marhl, Marko; Korosak, Dean

2011-01-01

We have analyzed the stochastic resonance phenomenon on spatial networks of bistable and excitable oscillators, which are connected according to their location and the amplitude of external forcing. By smoothly altering the network topology from a scale-free (SF) network with dominating long-range connections to a network where principally only adjacent oscillators are connected, we reveal that besides an optimal noise intensity, there is also a most favorable interaction topology at which the best correlation between the response of the network and the imposed weak external forcing is achieved. For various distributions of the amplitudes of external forcing, the optimal topology is always found in the intermediate regime between the highly heterogeneous SF network and the strong geometric regime. Our findings thus indicate that a suitable number of hubs and with that an optimal ratio between short- and long-range connections is necessary in order to obtain the best global response of a spatial network. Furthermore, we link the existence of the optimal interaction topology to a critical point indicating the transition from a long-range interactions-dominated network to a more lattice-like network structure.

Identification of Multiple-Mode Linear Models Based on Particle Swarm Optimizer with Cyclic Network Mechanism

Directory of Open Access Journals (Sweden)

Tae-Hyoung Kim

2017-01-01

Full Text Available This paper studies the metaheuristic optimizer-based direct identification of a multiple-mode system consisting of a finite set of linear regression representations of subsystems. To this end, the concept of a multiple-mode linear regression model is first introduced, and its identification issues are established. A method for reducing the identification problem for multiple-mode models to an optimization problem is also described in detail. Then, to overcome the difficulties that arise because the formulated optimization problem is inherently ill-conditioned and nonconvex, the cyclic-network-topology-based constrained particle swarm optimizer (CNT-CPSO is introduced, and a concrete procedure for the CNT-CPSO-based identification methodology is developed. This scheme requires no prior knowledge of the mode transitions between subsystems and, unlike some conventional methods, can handle a large amount of data without difficulty during the identification process. This is one of the distinguishing features of the proposed method. The paper also considers an extension of the CNT-CPSO-based identification scheme that makes it possible to simultaneously obtain both the optimal parameters of the multiple submodels and a certain decision parameter involved in the mode transition criteria. Finally, an experimental setup using a DC motor system is established to demonstrate the practical usability of the proposed metaheuristic optimizer-based identification scheme for developing a multiple-mode linear regression model.

Transient response of nonlinear polymer networks: A kinetic theory

Science.gov (United States)

Vernerey, Franck J.

2018-06-01

Dynamic networks are found in a majority of natural materials, but also in engineering materials, such as entangled polymers and physically cross-linked gels. Owing to their transient bond dynamics, these networks display a rich class of behaviors, from elasticity, rheology, self-healing, or growth. Although classical theories in rheology and mechanics have enabled us to characterize these materials, there is still a gap in our understanding on how individuals (i.e., the mechanics of each building blocks and its connection with others) affect the emerging response of the network. In this work, we introduce an alternative way to think about these networks from a statistical point of view. More specifically, a network is seen as a collection of individual polymer chains connected by weak bonds that can associate and dissociate over time. From the knowledge of these individual chains (elasticity, transient attachment, and detachment events), we construct a statistical description of the population and derive an evolution equation of their distribution based on applied deformation and their local interactions. We specifically concentrate on nonlinear elastic response that follows from the strain stiffening response of individual chains of finite size. Upon appropriate averaging operations and using a mean field approximation, we show that the distribution can be replaced by a so-called chain distribution tensor that is used to determine important macroscopic measures such as stress, energy storage and dissipation in the network. Prediction of the kinetic theory are then explored against known experimental measurement of polymer responses under uniaxial loading. It is found that even under the simplest assumptions of force-independent chain kinetics, the model is able to reproduce complex time-dependent behaviors of rubber and self-healing supramolecular polymers.

Identification of Hadronic Tau Lepton Decays at the ATLAS Detector Using Artificial Neural Networks

CERN Document Server

AUTHOR|(CDS)2093068; Zuber, Kai

Tau leptons play an important role in a wide range of physics analyses at the LHC, such as the verification of the Standard Model at the TeV scale or the determination of Higgs boson properties. For the identification of hadronically decaying tau leptons with the ATLAS detector, a sophisticated, multi-variate algorithm is required. This is due to the high production cross section for QCD jets, the dominant background. Artificial neural networks (ANNs) have gained much attention in recent years by winning several pattern recognition contests. In this thesis, a survey of ANNs is given with a focus on developments of the past 20 years. Based on this work, a novel, ANN-based tau identification is presented which is competitive to the current BDT-based approach. The influence of various hyperparameters on the identification is studied and optimized. Both stability and performance are enhanced through formation of ANN ensembles. Additionally, a score-flattening algorithm is presented that is beneficial to physics a...

Artificial Neural Networks for Nonlinear Dynamic Response Simulation in Mechanical Systems

DEFF Research Database (Denmark)

Christiansen, Niels Hørbye; Høgsberg, Jan Becker; Winther, Ole

2011-01-01

It is shown how artificial neural networks can be trained to predict dynamic response of a simple nonlinear structure. Data generated using a nonlinear finite element model of a simplified wind turbine is used to train a one layer artificial neural network. When trained properly the network is ab...... to perform accurate response prediction much faster than the corresponding finite element model. Initial result indicate a reduction in cpu time by two orders of magnitude....

A modified random decrement technique for modal identification from nonstationary ambient response data only

International Nuclear Information System (INIS)

Lin, Chang Sheng; Chiang, Dar Yun

2012-01-01

Modal identification is considered from response data of structural system under nonstationary ambient vibration. In a previous paper, we showed that by assuming the ambient excitation to be nonstationary white noise in the form of a product model, the nonstationary response signals can be converted into free-vibration data via the correlation technique. In the present paper, if the ambient excitation can be modeled as a nonstationary white noise in the form of a product model, then the nonstationary cross random decrement signatures of structural response evaluated at any fixed time instant are shown theoretically to be proportional to the nonstationary cross-correlation functions. The practical problem of insufficient data samples available for evaluating nonstationary random decrement signatures can be approximately resolved by first extracting the amplitude-modulating function from the response and then transforming the nonstationary responses into stationary ones. Modal-parameter identification can then be performed using the Ibrahim time-domain technique, which is effective at identifying closely spaced modes. The theory proposed can be further extended by using the filtering concept to cover the case of nonstationary color excitations. Numerical simulations confirm the validity of the proposed method for identification of modal parameters from nonstationary ambient response data

A neural network model of lateralization during letter identification.

Science.gov (United States)

Shevtsova, N; Reggia, J A

1999-03-01

The causes of cerebral lateralization of cognitive and other functions are currently not well understood. To investigate one aspect of function lateralization, a bihemispheric neural network model for a simple visual identification task was developed that has two parallel interacting paths of information processing. The model is based on commonly accepted concepts concerning neural connectivity, activity dynamics, and synaptic plasticity. A combination of both unsupervised (Hebbian) and supervised (Widrow-Hoff) learning rules is used to train the model to identify a small set of letters presented as input stimuli in the left visual hemifield, in the central position, and in the right visual hemifield. Each visual hemifield projects onto the contralateral hemisphere, and the two hemispheres interact via a simulated corpus callosum. The contribution of each individual hemisphere to the process of input stimuli identification was studied for a variety of underlying asymmetries. The results indicate that multiple asymmetries may cause lateralization. Lateralization occurred toward the side having larger size, higher excitability, or higher learning rate parameters. It appeared more intensively with strong inhibitory callosal connections, supporting the hypothesis that the corpus callosum plays a functionally inhibitory role. The model demonstrates clearly the dependence of lateralization on different hemisphere parameters and suggests that computational models can be useful in better understanding the mechanisms underlying emergence of lateralization.

Identification method of gas-liquid two-phase flow regime based on image wavelet packet information entropy and genetic neural network

International Nuclear Information System (INIS)

Zhou Yunlong; Chen Fei; Sun Bin

2008-01-01

Based on the characteristic that wavelet packet transform image can be decomposed by different scales, a flow regime identification method based on image wavelet packet information entropy feature and genetic neural network was proposed. Gas-liquid two-phase flow images were captured by digital high speed video systems in horizontal pipe. The information entropy feature from transformation coefficients were extracted using image processing techniques and multi-resolution analysis. The genetic neural network was trained using those eigenvectors, which was reduced by the principal component analysis, as flow regime samples, and the flow regime intelligent identification was realized. The test result showed that image wavelet packet information entropy feature could excellently reflect the difference between seven typical flow regimes, and the genetic neural network with genetic algorithm and BP algorithm merits were with the characteristics of fast convergence for simulation and avoidance of local minimum. The recognition possibility of the network could reach up to about 100%, and a new and effective method was presented for on-line flow regime. (authors)

Resting State EEG-based biometrics for individual identification using convolutional neural networks.

Science.gov (United States)

Lan Ma; Minett, James W; Blu, Thierry; Wang, William S-Y

2015-08-01

Biometrics is a growing field, which permits identification of individuals by means of unique physical features. Electroencephalography (EEG)-based biometrics utilizes the small intra-personal differences and large inter-personal differences between individuals' brainwave patterns. In the past, such methods have used features derived from manually-designed procedures for this purpose. Another possibility is to use convolutional neural networks (CNN) to automatically extract an individual's best and most unique neural features and conduct classification, using EEG data derived from both Resting State with Open Eyes (REO) and Resting State with Closed Eyes (REC). Results indicate that this CNN-based joint-optimized EEG-based Biometric System yields a high degree of accuracy of identification (88%) for 10-class classification. Furthermore, rich inter-personal difference can be found using a very low frequency band (0-2Hz). Additionally, results suggest that the temporal portions over which subjects can be individualized is less than 200 ms.

Simulation of Stimuli-Responsive Polymer Networks

Directory of Open Access Journals (Sweden)

Thomas Gruhn

2013-11-01

Full Text Available The structure and material properties of polymer networks can depend sensitively on changes in the environment. There is a great deal of progress in the development of stimuli-responsive hydrogels for applications like sensors, self-repairing materials or actuators. Biocompatible, smart hydrogels can be used for applications, such as controlled drug delivery and release, or for artificial muscles. Numerical studies have been performed on different length scales and levels of details. Macroscopic theories that describe the network systems with the help of continuous fields are suited to study effects like the stimuli-induced deformation of hydrogels on large scales. In this article, we discuss various macroscopic approaches and describe, in more detail, our phase field model, which allows the calculation of the hydrogel dynamics with the help of a free energy that considers physical and chemical impacts. On a mesoscopic level, polymer systems can be modeled with the help of the self-consistent field theory, which includes the interactions, connectivity, and the entropy of the polymer chains, and does not depend on constitutive equations. We present our recent extension of the method that allows the study of the formation of nano domains in reversibly crosslinked block copolymer networks. Molecular simulations of polymer networks allow the investigation of the behavior of specific systems on a microscopic scale. As an example for microscopic modeling of stimuli sensitive polymer networks, we present our Monte Carlo simulations of a filament network system with crosslinkers.

Integration of metabolic and gene regulatory networks modulates the C. elegans dietary response.

Science.gov (United States)

Watson, Emma; MacNeil, Lesley T; Arda, H Efsun; Zhu, Lihua Julie; Walhout, Albertha J M

2013-03-28

Expression profiles are tailored according to dietary input. However, the networks that control dietary responses remain largely uncharacterized. Here, we combine forward and reverse genetic screens to delineate a network of 184 genes that affect the C. elegans dietary response to Comamonas DA1877 bacteria. We find that perturbation of a mitochondrial network composed of enzymes involved in amino acid metabolism and the TCA cycle affects the dietary response. In humans, mutations in the corresponding genes cause inborn diseases of amino acid metabolism, most of which are treated by dietary intervention. We identify several transcription factors (TFs) that mediate the changes in gene expression upon metabolic network perturbations. Altogether, our findings unveil a transcriptional response system that is poised to sense dietary cues and metabolic imbalances, illustrating extensive communication between metabolic networks in the mitochondria and gene regulatory networks in the nucleus. Copyright © 2013 Elsevier Inc. All rights reserved.

Wavelet-based blind identification of the UCLA Factor building using ambient and earthquake responses

International Nuclear Information System (INIS)

Hazra, B; Narasimhan, S

2010-01-01

Blind source separation using second-order blind identification (SOBI) has been successfully applied to the problem of output-only identification, popularly known as ambient system identification. In this paper, the basic principles of SOBI for the static mixtures case is extended using the stationary wavelet transform (SWT) in order to improve the separability of sources, thereby improving the quality of identification. Whereas SOBI operates on the covariance matrices constructed directly from measurements, the method presented in this paper, known as the wavelet-based modified cross-correlation method, operates on multiple covariance matrices constructed from the correlation of the responses. The SWT is selected because of its time-invariance property, which means that the transform of a time-shifted signal can be obtained as a shifted version of the transform of the original signal. This important property is exploited in the construction of several time-lagged covariance matrices. The issue of non-stationary sources is addressed through the formation of several time-shifted, windowed covariance matrices. Modal identification results are presented for the UCLA Factor building using ambient vibration data and for recorded responses from the Parkfield earthquake, and compared with published results for this building. Additionally, the effect of sensor density on the identification results is also investigated

Disease candidate gene identification and prioritization using protein interaction networks

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Aronow Bruce J

2009-02-01

Full Text Available Abstract Background Although most of the current disease candidate gene identification and prioritization methods depend on functional annotations, the coverage of the gene functional annotations is a limiting factor. In the current study, we describe a candidate gene prioritization method that is entirely based on protein-protein interaction network (PPIN analyses. Results For the first time, extended versions of the PageRank and HITS algorithms, and the K-Step Markov method are applied to prioritize disease candidate genes in a training-test schema. Using a list of known disease-related genes from our earlier study as a training set ("seeds", and the rest of the known genes as a test list, we perform large-scale cross validation to rank the candidate genes and also evaluate and compare the performance of our approach. Under appropriate settings – for example, a back probability of 0.3 for PageRank with Priors and HITS with Priors, and step size 6 for K-Step Markov method – the three methods achieved a comparable AUC value, suggesting a similar performance. Conclusion Even though network-based methods are generally not as effective as integrated functional annotation-based methods for disease candidate gene prioritization, in a one-to-one comparison, PPIN-based candidate gene prioritization performs better than all other gene features or annotations. Additionally, we demonstrate that methods used for studying both social and Web networks can be successfully used for disease candidate gene prioritization.

Functional identification of interneurons responsible for left-right coordination of hindlimbs in mammals

DEFF Research Database (Denmark)

Butt, Simon J.B.; Kiehn, Ole

2003-01-01

Local neuronal networks that are responsible for walking are poorly characterized in mammals. Using an innovative approach to identify interneuron inputs onto motorneuron populations in a neonatal rodent spinal cord preparation, we have investigated the network responsible for left-right coordina......Local neuronal networks that are responsible for walking are poorly characterized in mammals. Using an innovative approach to identify interneuron inputs onto motorneuron populations in a neonatal rodent spinal cord preparation, we have investigated the network responsible for left......-right coordination of the hindlimbs. We demonstrate how commissural interneurons (CINs), whose axons traverse the midline to innervate contralateral neurons, are organized such that distinct flexor and extensor centers in the rostral lumbar spinal cord define activity in both flexor and extensor caudal motor pools....... In addition, the nature of some connections are reconfigured on switching from rest to locomotion via a mechanism that might be associated with synaptic plasticity in the spinal cord. These results from identified pattern-generating interneurons demonstrate how interneuron populations create an effective...

Pilot Ionosonde Network for Identification of Traveling Ionospheric Disturbances

Science.gov (United States)

Reinisch, Bodo; Galkin, Ivan; Belehaki, Anna; Paznukhov, Vadym; Huang, Xueqin; Altadill, David; Buresova, Dalia; Mielich, Jens; Verhulst, Tobias; Stankov, Stanimir; Blanch, Estefania; Kouba, Daniel; Hamel, Ryan; Kozlov, Alexander; Tsagouri, Ioanna; Mouzakis, Angelos; Messerotti, Mauro; Parkinson, Murray; Ishii, Mamoru

2018-03-01

Traveling ionospheric disturbances (TIDs) are the ionospheric signatures of atmospheric gravity waves. Their identification and tracking is important because the TIDs affect all services that rely on predictable ionospheric radio wave propagation. Although various techniques have been proposed to measure TID characteristics, their real-time implementation still has several difficulties. In this contribution, we present a new technique, based on the analysis of oblique Digisonde-to-Digisonde "skymap" observations, to directly identify TIDs and specify the TID wave parameters based on the measurement of angle of arrival, Doppler frequency, and time of flight of ionospherically reflected high-frequency radio pulses. The technique has been implemented for the first time for the Network for TID Exploration project with data streaming from the network of European Digisonde DPS4D observatories. The performance is demonstrated during a period of moderate auroral activity, assessing its consistency with independent measurements such as data from auroral magnetometers and electron density perturbations from Digisondes and Global Navigation Satellite System stations. Given that the different types of measurements used for this assessment were not made at exactly the same time and location, and that there was insufficient coverage in the area between the atmospheric gravity wave sources and the measurement locations, we can only consider our interpretation as plausible and indicative for the reliability of the extracted TID characteristics. In the framework of the new TechTIDE project (European Commission H2020), a retrospective analysis of the Network for TID Exploration results in comparison with those extracted from Global Navigation Satellite System total electron content-based methodologies is currently being attempted, and the results will be the objective of a follow-up paper.

Uncovering transcriptional regulation of metabolism by using metabolic network topology

DEFF Research Database (Denmark)

Patil, Kiran Raosaheb; Nielsen, Jens

2005-01-01

in the metabolic network that follow a common transcriptional response. Thus, the algorithm enables identification of so-called reporter metabolites (metabolites around which the most significant transcriptional changes occur) and a set of connected genes with significant and coordinated response to genetic......Cellular response to genetic and environmental perturbations is often reflected and/or mediated through changes in the metabolism, because the latter plays a key role in providing Gibbs free energy and precursors for biosynthesis. Such metabolic changes are often exerted through transcriptional...... therefore developed an algorithm that is based on hypothesis-driven data analysis to uncover the transcriptional regulatory architecture of metabolic networks. By using information on the metabolic network topology from genome-scale metabolic reconstruction, we show that it is possible to reveal patterns...

Flow-pattern identification and nonlinear dynamics of gas-liquid two-phase flow in complex networks.

Science.gov (United States)

Gao, Zhongke; Jin, Ningde

2009-06-01

The identification of flow pattern is a basic and important issue in multiphase systems. Because of the complexity of phase interaction in gas-liquid two-phase flow, it is difficult to discern its flow pattern objectively. In this paper, we make a systematic study on the vertical upward gas-liquid two-phase flow using complex network. Three unique network construction methods are proposed to build three types of networks, i.e., flow pattern complex network (FPCN), fluid dynamic complex network (FDCN), and fluid structure complex network (FSCN). Through detecting the community structure of FPCN by the community-detection algorithm based on K -mean clustering, useful and interesting results are found which can be used for identifying five vertical upward gas-liquid two-phase flow patterns. To investigate the dynamic characteristics of gas-liquid two-phase flow, we construct 50 FDCNs under different flow conditions, and find that the power-law exponent and the network information entropy, which are sensitive to the flow pattern transition, can both characterize the nonlinear dynamics of gas-liquid two-phase flow. Furthermore, we construct FSCN and demonstrate how network statistic can be used to reveal the fluid structure of gas-liquid two-phase flow. In this paper, from a different perspective, we not only introduce complex network theory to the study of gas-liquid two-phase flow but also indicate that complex network may be a powerful tool for exploring nonlinear time series in practice.

Development of visible-light responsive and mechanically enhanced "smart" UCST interpenetrating network hydrogels.

Science.gov (United States)

Xu, Yifei; Ghag, Onkar; Reimann, Morgan; Sitterle, Philip; Chatterjee, Prithwish; Nofen, Elizabeth; Yu, Hongyu; Jiang, Hanqing; Dai, Lenore L

2017-12-20

An interpenetrating polymer network (IPN), chlorophyllin-incorporated environmentally responsive hydrogel was synthesized and exhibited the following features: enhanced mechanical properties, upper critical solution temperature (UCST) swelling behavior, and promising visible-light responsiveness. Poor mechanical properties are known challenges for hydrogel-based materials. By forming an interpenetrating network between polyacrylamide (PAAm) and poly(acrylic acid) (PAAc) polymer networks, the mechanical properties of the synthesized IPN hydrogels were significantly improved compared to hydrogels made of a single network of each polymer. The formation of the interpenetrating network was confirmed by Fourier Transform Infrared Spectroscopy (FTIR), the analysis of glass transition temperature, and a unique UCST responsive swelling behavior, which is in contrast to the more prevalent lower critical solution temperature (LCST) behaviour of environmentally responsive hydrogels. The visible-light responsiveness of the synthesized hydrogel also demonstrated a positive swelling behavior, and the effect of incorporating chlorophyllin as the chromophore unit was observed to reduce the average pore size and further enhance the mechanical properties of the hydrogel. This interpenetrating network system shows potential to serve as a new route in developing "smart" hydrogels using visible-light as a simple, inexpensive, and remotely controllable stimulus.

The Strategic Impact of Corporate Responsibility and Criminal Networks on Value Co-Creation

Directory of Open Access Journals (Sweden)

Peter Zettinig

2011-02-01

Full Text Available This article is motivated by the increasing concern about the ever-declining security of pharmaceutical products due to the abundance of counterfeit network actors. We argue that if networks are effective mechanisms for criminal organizations to infiltrate into any value chain, then networks should also work for responsible businesses in their quests to counter this phenomenon of value destruction, which is ultimately detrimental to the value co-creation process. Thus, this article demonstrates a nuanced understanding of the strategic impact of corporate responsibility of actors in networks on value co-creation. The current discourse on value co-creation in business networks is structured in such a way that it precludes its inherent corporate responsibility component even though they are not mutually exclusive. Moreover, research on value co-creation aimed at the proactive and responsible defence of a network substance via value co-protection has been mostly scant. We propose a model of value-optimization through value co-protection and ethical responsibility. This way of theorizing has several implications for both policy making and managerial decision making in the pharmaceutical industry and beyond.

System Identification with Quantized Observations

CERN Document Server

Wang, Le Yi; Zhang, Jifeng; Zhao, Yanlong

2010-01-01

This book presents recently developed methodologies that utilize quantized information in system identification and explores their potential in extending control capabilities for systems with limited sensor information or networked systems. The results of these methodologies can be applied to signal processing and control design of communication and computer networks, sensor networks, mobile agents, coordinated data fusion, remote sensing, telemedicine, and other fields in which noise-corrupted quantized data need to be processed. Providing a comprehensive coverage of quantized identification,

System Identification Using Multilayer Differential Neural Networks: A New Result

Directory of Open Access Journals (Sweden)

J. Humberto Pérez-Cruz

2012-01-01

Full Text Available In previous works, a learning law with a dead zone function was developed for multilayer differential neural networks. This scheme requires strictly a priori knowledge of an upper bound for the unmodeled dynamics. In this paper, the learning law is modified in such a way that this condition is relaxed. By this modification, the tuning process is simpler and the dead-zone function is not required anymore. On the basis of this modification and by using a Lyapunov-like analysis, a stronger result is here demonstrated: the exponential convergence of the identification error to a bounded zone. Besides, a value for upper bound of such zone is provided. The workability of this approach is tested by a simulation example.

Molecular Network-Based Identification of Competing Endogenous RNAs in Thyroid Carcinoma

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Minjia Lu

2018-01-01

Full Text Available RNAs may act as competing endogenous RNAs (ceRNAs, a critical mechanism in determining gene expression regulations in many cancers. However, the roles of ceRNAs in thyroid carcinoma remains elusive. In this study, we have developed a novel pipeline called Molecular Network-based Identification of ceRNA (MNIceRNA to identify ceRNAs in thyroid carcinoma. MNIceRNA first constructs micro RNA (miRNA–messenger RNA (mRNAlong non-coding RNA (lncRNA networks from miRcode database and weighted correlation network analysis (WGCNA, based on which to identify key drivers of differentially expressed RNAs between normal and tumor samples. It then infers ceRNAs of the identified key drivers using the long non-coding competing endogenous database (lnCeDB. We applied the pipeline into The Cancer Genome Atlas (TCGA thyroid carcinoma data. As a result, 598 lncRNAs, 1025 mRNAs, and 90 microRNA (miRNAs were inferred to be differentially expressed between normal and thyroid cancer samples. We then obtained eight key driver miRNAs, among which hsa-mir-221 and hsa-mir-222 were key driver RNAs identified by both miRNA–mRNA–lncRNA and WGCNA network. In addition, hsa-mir-375 was inferred to be significant for patients’ survival with 34 associated ceRNAs, among which RUNX2, DUSP6 and SEMA3D are known oncogenes regulating cellular proliferation and differentiation in thyroid cancer. These ceRNAs are critical in revealing the secrets behind thyroid cancer progression and may serve as future therapeutic biomarkers.

Identification of Tobacco Topping Responsive Proteins in Roots

Directory of Open Access Journals (Sweden)

Hongxiang eGuo

2016-04-01

Full Text Available Tobacco plant has many responses to topping, such as the increase in ability of nicotine synthesis and secondary growth of roots. Some topping responsive miRNAs and genes had been identified in our previous work, but it is not enough to elaborate mechanism of tobacco response to topping. Here, topping responsive proteins were screened from tobacco roots with two-dimensional electrophoresis. Of these proteins, calretulin (CRT and Auxin-responsive protein IAA9 were related to the secondary growth of roots, LRR disease resistance, heat shock protein 70 and farnesyl pyrophosphate synthase 1（FPPS）were involved in wounding stress response, and F-box protein played an important role in promoting the ability of nicotine synthesis after topping. In addition, there were five tobacco bHLH proteins (NtbHLH, NtMYC1a, NtMYC1b, NtMYC2a and NtMYC2b related to nicotine synthesis. It was suggested that NtMYC2 might be the main positive transcription factor and NtbHLH protein is a negative regulator in the JA-mediating activation of nicotine synthesis after topping. Tobacco topping activates some comprehensive biology processes involving IAA and JA signaling pathway, and the identification of these proteins will be helpful to understand the process of topping response.

5-HTTLPR differentially predicts brain network responses to emotional faces

DEFF Research Database (Denmark)

Fisher, Patrick M; Grady, Cheryl L; Madsen, Martin K

2015-01-01

The effects of the 5-HTTLPR polymorphism on neural responses to emotionally salient faces have been studied extensively, focusing on amygdala reactivity and amygdala-prefrontal interactions. Despite compelling evidence that emotional face paradigms engage a distributed network of brain regions...... to fearful faces was significantly greater in S' carriers compared to LA LA individuals. These findings provide novel evidence for emotion-specific 5-HTTLPR effects on the response of a distributed set of brain regions including areas responsive to emotionally salient stimuli and critical components...... involved in emotion, cognitive and visual processing, less is known about 5-HTTLPR effects on broader network responses. To address this, we evaluated 5-HTTLPR differences in the whole-brain response to an emotional faces paradigm including neutral, angry and fearful faces using functional magnetic...

Robust identification of transcriptional regulatory networks using a Gibbs sampler on outlier sum statistic.

Science.gov (United States)

Gu, Jinghua; Xuan, Jianhua; Riggins, Rebecca B; Chen, Li; Wang, Yue; Clarke, Robert

2012-08-01

Identification of transcriptional regulatory networks (TRNs) is of significant importance in computational biology for cancer research, providing a critical building block to unravel disease pathways. However, existing methods for TRN identification suffer from the inclusion of excessive 'noise' in microarray data and false-positives in binding data, especially when applied to human tumor-derived cell line studies. More robust methods that can counteract the imperfection of data sources are therefore needed for reliable identification of TRNs in this context. In this article, we propose to establish a link between the quality of one target gene to represent its regulator and the uncertainty of its expression to represent other target genes. Specifically, an outlier sum statistic was used to measure the aggregated evidence for regulation events between target genes and their corresponding transcription factors. A Gibbs sampling method was then developed to estimate the marginal distribution of the outlier sum statistic, hence, to uncover underlying regulatory relationships. To evaluate the effectiveness of our proposed method, we compared its performance with that of an existing sampling-based method using both simulation data and yeast cell cycle data. The experimental results show that our method consistently outperforms the competing method in different settings of signal-to-noise ratio and network topology, indicating its robustness for biological applications. Finally, we applied our method to breast cancer cell line data and demonstrated its ability to extract biologically meaningful regulatory modules related to estrogen signaling and action in breast cancer. The Gibbs sampler MATLAB package is freely available at http://www.cbil.ece.vt.edu/software.htm. xuan@vt.edu Supplementary data are available at Bioinformatics online.

MicroRNA-mediated networks underlie immune response regulation in papillary thyroid carcinoma

Science.gov (United States)

Huang, Chen-Tsung; Oyang, Yen-Jen; Huang, Hsuan-Cheng; Juan, Hsueh-Fen

2014-09-01

Papillary thyroid carcinoma (PTC) is a common endocrine malignancy with low death rate but increased incidence and recurrence in recent years. MicroRNAs (miRNAs) are small non-coding RNAs with diverse regulatory capacities in eukaryotes and have been frequently implied in human cancer. Despite current progress, however, a panoramic overview concerning miRNA regulatory networks in PTC is still lacking. Here, we analyzed the expression datasets of PTC from The Cancer Genome Atlas (TCGA) Data Portal and demonstrate for the first time that immune responses are significantly enriched and under specific regulation in the direct miRNA-target network among distinctive PTC variants to different extents. Additionally, considering the unconventional properties of miRNAs, we explore the protein-coding competing endogenous RNA (ceRNA) and the modulatory networks in PTC and unexpectedly disclose concerted regulation of immune responses from these networks. Interestingly, miRNAs from these conventional and unconventional networks share general similarities and differences but tend to be disparate as regulatory activities increase, coordinately tuning the immune responses that in part account for PTC tumor biology. Together, our systematic results uncover the intensive regulation of immune responses underlain by miRNA-mediated networks in PTC, opening up new avenues in the management of thyroid cancer.

Identification of a Typical CSTR Using Optimal Focused Time Lagged Recurrent Neural Network Model with Gamma Memory Filter

OpenAIRE

Naikwad, S. N.; Dudul, S. V.

2009-01-01

A focused time lagged recurrent neural network (FTLR NN) with gamma memory filter is designed to learn the subtle complex dynamics of a typical CSTR process. Continuous stirred tank reactor exhibits complex nonlinear operations where reaction is exothermic. It is noticed from literature review that process control of CSTR using neuro-fuzzy systems was attempted by many, but optimal neural network model for identification of CSTR process is not yet available. As CSTR process includes tempora...

Inferring a Drive-Response Network from Time Series of Topological Measures in Complex Networks with Transfer Entropy

Directory of Open Access Journals (Sweden)

Xinbo Ai

2014-11-01

Full Text Available Topological measures are crucial to describe, classify and understand complex networks. Lots of measures are proposed to characterize specific features of specific networks, but the relationships among these measures remain unclear. Taking into account that pulling networks from different domains together for statistical analysis might provide incorrect conclusions, we conduct our investigation with data observed from the same network in the form of simultaneously measured time series. We synthesize a transfer entropy-based framework to quantify the relationships among topological measures, and then to provide a holistic scenario of these measures by inferring a drive-response network. Techniques from Symbolic Transfer Entropy, Effective Transfer Entropy, and Partial Transfer Entropy are synthesized to deal with challenges such as time series being non-stationary, finite sample effects and indirect effects. We resort to kernel density estimation to assess significance of the results based on surrogate data. The framework is applied to study 20 measures across 2779 records in the Technology Exchange Network, and the results are consistent with some existing knowledge. With the drive-response network, we evaluate the influence of each measure by calculating its strength, and cluster them into three classes, i.e., driving measures, responding measures and standalone measures, according to the network communities.

Identification of Jets Containing b-Hadrons with Recurrent Neural Networks at the ATLAS Experiment

CERN Multimedia

CERN. Geneva

2017-01-01

A novel b-jet identification algorithm is constructed with a Recurrent Neural Network (RNN) at the ATLAS Experiment. This talk presents the expected performance of the RNN based b-tagging in simulated $t \\bar t$ events. The RNN based b-tagging processes properties of tracks associated to jets which are represented in sequences. In contrast to traditional impact-parameter-based b-tagging algorithms which assume the tracks of jets are independent from each other, RNN based b-tagging can exploit the spatial and kinematic correlations of tracks which are initiated from the same b-hadrons. The neural network nature of the tagging algorithm also allows the flexibility of extending input features to include more track properties than can be effectively used in traditional algorithms.

Structure identification of an uncertain network coupled with complex-variable chaotic systems via adaptive impulsive control

International Nuclear Information System (INIS)

Liu Dan-Feng; Wu Zhao-Yan; Ye Qing-Ling

2014-01-01

In this paper, structure identification of an uncertain network coupled with complex-variable chaotic systems is investigated. Both the topological structure and the system parameters can be unknown and need to be identified. Based on impulsive stability theory and the Lyapunov function method, an impulsive control scheme combined with an adaptive strategy is adopted to design effective and universal network estimators. The restriction on the impulsive interval is relaxed by adopting an adaptive strategy. Further, the proposed method can monitor the online switching topology effectively. Several numerical simulations are provided to illustrate the effectiveness of the theoretical results. (general)

Identification of Pavement Distress Types and Pavement Condition Evaluation Based on Network Level Inspection for Jazan City Road Network

Directory of Open Access Journals (Sweden)

M Mubaraki

2014-06-01

Full Text Available The first step in establishing a pavement management system (PMS is road network identification. An important feature of a PMS is the ability to determine the current condition of a road network and predict its future condition. Pavement condition evaluation may involve structure, roughness, surface distress, and safety evaluation. In this study, a pavement distress condition rating procedure was used to achieve the objectives of this study. The main objectives of this study were to identify the common types of distress that exist on the Jazan road network (JRN, either on main roads or secondary roads, and to evaluate the pavement condition based on network level inspection. The study was conducted by collecting pavement distress types from 227 sample units on main roads and 500 sample units from secondary roads. Data were examined through analysis of common types of distress identified in both main and secondary roads. Through these data, pavement condition index (PCI for each sample unit was then calculated. Through these calculations, average PCIs for the main and secondary roads were determined. Results indicated that the most common pavement distress types on main roads were patching and utility cut patching, longitudinal and transverse cracking, polished aggregate, weathering and raveling, and alligator cracking. The most common pavement distress types on secondary roads were weathering and raveling, patching and utility cut patching, longitudinal and transverse cracking, potholes, and alligator cracking. The results also indicated that 65% of Jazan's main road network has an average pavement condition rating of very good while only 30% of Jazan's secondary roads network has an average pavement condition.

Real-Time Gas Identification by Analyzing the Transient Response of Capillary-Attached Conductive Gas Sensor

Directory of Open Access Journals (Sweden)

Behzad Bahraminejad

2010-05-01

Full Text Available In this study, the ability of the Capillary-attached conductive gas sensor (CGS in real-time gas identification was investigated. The structure of the prototype fabricated CGS is presented. Portions were selected from the beginning of the CGS transient response including the first 11 samples to the first 100 samples. Different feature extraction and classification methods were applied on the selected portions. Validation of methods was evaluated to study the ability of an early portion of the CGS transient response in target gas (TG identification. Experimental results proved that applying extracted features from an early part of the CGS transient response along with a classifier can distinguish short-chain alcohols from each other perfectly. Decreasing time of exposition in the interaction between target gas and sensing element improved the reliability of the sensor. Classification rate was also improved and time of identification was decreased. Moreover, the results indicated the optimum interval of the early transient response of the CGS for selecting portions to achieve the best classification rates.

Identification of driving network of cellular differentiation from single sample time course gene expression data

Science.gov (United States)

Chen, Ye; Wolanyk, Nathaniel; Ilker, Tunc; Gao, Shouguo; Wang, Xujing

Methods developed based on bifurcation theory have demonstrated their potential in driving network identification for complex human diseases, including the work by Chen, et al. Recently bifurcation theory has been successfully applied to model cellular differentiation. However, there one often faces a technical challenge in driving network prediction: time course cellular differentiation study often only contains one sample at each time point, while driving network prediction typically require multiple samples at each time point to infer the variation and interaction structures of candidate genes for the driving network. In this study, we investigate several methods to identify both the critical time point and the driving network through examination of how each time point affects the autocorrelation and phase locking. We apply these methods to a high-throughput sequencing (RNA-Seq) dataset of 42 subsets of thymocytes and mature peripheral T cells at multiple time points during their differentiation (GSE48138 from GEO). We compare the predicted driving genes with known transcription regulators of cellular differentiation. We will discuss the advantages and limitations of our proposed methods, as well as potential further improvements of our methods.

A Single-Walled Carbon Nanotube Network Gas Sensing Device

Directory of Open Access Journals (Sweden)

I-Ju Teng

2011-08-01

Full Text Available The goal of this research was to develop a chemical gas sensing device based on single-walled carbon nanotube (SWCNT networks. The SWCNT networks are synthesized on Al2O3-deposted SiO2/Si substrates with 10 nm-thick Fe as the catalyst precursor layer using microwave plasma chemical vapor deposition (MPCVD. The development of interconnected SWCNT networks can be exploited to recognize the identities of different chemical gases by the strength of their particular surface adsorptive and desorptive responses to various types of chemical vapors. The physical responses on the surface of the SWCNT networks cause superficial changes in the electric charge that can be converted into electronic signals for identification. In this study, we tested NO2 and NH3 vapors at ppm levels at room temperature with our self-made gas sensing device, which was able to obtain responses to sensitivity changes with a concentration of 10 ppm for NO2 and 24 ppm for NH3.

Dissociation of rapid response learning and facilitation in perceptual and conceptual networks of person recognition.

Science.gov (United States)

Valt, Christian; Klein, Christoph; Boehm, Stephan G

2015-08-01

Repetition priming is a prominent example of non-declarative memory, and it increases the accuracy and speed of responses to repeatedly processed stimuli. Major long-hold memory theories posit that repetition priming results from facilitation within perceptual and conceptual networks for stimulus recognition and categorization. Stimuli can also be bound to particular responses, and it has recently been suggested that this rapid response learning, not network facilitation, provides a sound theory of priming of object recognition. Here, we addressed the relevance of network facilitation and rapid response learning for priming of person recognition with a view to advance general theories of priming. In four experiments, participants performed conceptual decisions like occupation or nationality judgments for famous faces. The magnitude of rapid response learning varied across experiments, and rapid response learning co-occurred and interacted with facilitation in perceptual and conceptual networks. These findings indicate that rapid response learning and facilitation in perceptual and conceptual networks are complementary rather than competing theories of priming. Thus, future memory theories need to incorporate both rapid response learning and network facilitation as individual facets of priming. © 2014 The British Psychological Society.

Identification of hand motion using background subtraction method and extraction of image binary with backpropagation neural network on skeleton model

Science.gov (United States)

Fauziah; Wibowo, E. P.; Madenda, S.; Hustinawati

2018-03-01

Capturing and recording motion in human is mostly done with the aim for sports, health, animation films, criminality, and robotic applications. In this study combined background subtraction and back propagation neural network. This purpose to produce, find similarity movement. The acquisition process using 8 MP resolution camera MP4 format, duration 48 seconds, 30frame/rate. video extracted produced 1444 pieces and results hand motion identification process. Phase of image processing performed is segmentation process, feature extraction, identification. Segmentation using bakground subtraction, extracted feature basically used to distinguish between one object to another object. Feature extraction performed by using motion based morfology analysis based on 7 invariant moment producing four different classes motion: no object, hand down, hand-to-side and hands-up. Identification process used to recognize of hand movement using seven inputs. Testing and training with a variety of parameters tested, it appears that architecture provides the highest accuracy in one hundred hidden neural network. The architecture is used propagate the input value of the system implementation process into the user interface. The result of the identification of the type of the human movement has been clone to produce the highest acuracy of 98.5447%. The training process is done to get the best results.

Integrated built-in-test false and missed alarms reduction based on forward infinite impulse response & recurrent finite impulse response dynamic neural networks

Science.gov (United States)

Cui, Yiqian; Shi, Junyou; Wang, Zili

2017-11-01

Built-in tests (BITs) are widely used in mechanical systems to perform state identification, whereas the BIT false and missed alarms cause trouble to the operators or beneficiaries to make correct judgments. Artificial neural networks (ANN) are previously used for false and missed alarms identification, which has the features such as self-organizing and self-study. However, these ANN models generally do not incorporate the temporal effect of the bottom-level threshold comparison outputs and the historical temporal features are not fully considered. To improve the situation, this paper proposes a new integrated BIT design methodology by incorporating a novel type of dynamic neural networks (DNN) model. The new DNN model is termed as Forward IIR & Recurrent FIR DNN (FIRF-DNN), where its component neurons, network structures, and input/output relationships are discussed. The condition monitoring false and missed alarms reduction implementation scheme based on FIRF-DNN model is also illustrated, which is composed of three stages including model training, false and missed alarms detection, and false and missed alarms suppression. Finally, the proposed methodology is demonstrated in the application study and the experimental results are analyzed.

Flow regime identification methodology with MCNP-X code and artificial neural network

International Nuclear Information System (INIS)

Salgado, Cesar M.; Instituto de Engenharia Nuclear; Schirru, Roberto; Brandao, Luis E.B.; Pereira, Claudio M.N.A.

2009-01-01

This paper presents flow regimes identification methodology in multiphase system in annular, stratified and homogeneous oil-water-gas regimes. The principle is based on recognition of the pulse height distributions (PHD) from gamma-ray with supervised artificial neural network (ANN) systems. The detection geometry simulation comprises of two NaI(Tl) detectors and a dual-energy gamma-ray source. The measurement of scattered radiation enables the dual modality densitometry (DMD) measurement principle to be explored. Its basic principle is to combine the measurement of scattered and transmitted radiation in order to acquire information about the different flow regimes. The PHDs obtained by the detectors were used as input to ANN. The data sets required for training and testing the ANN were generated by the MCNP-X code from static and ideal theoretical models of multiphase systems. The ANN correctly identified the three different flow regimes for all data set evaluated. The results presented show that PHDs examined by ANN may be applied in the successfully flow regime identification. (author)

Demand Response in Low Voltage Distribution Networks with High PV Penetration

DEFF Research Database (Denmark)

Nainar, Karthikeyan; Pokhrel, Basanta Raj; Pillai, Jayakrishnan Radhakrishna

2017-01-01

the required flexibility from the electricity market through an aggregator. The optimum demand response enables consumption of maximum renewable energy within the network constraints. Simulation studies are conducted using Matlab and DigSilent Power factory software on a Danish low-voltage distribution system......In this paper, application of demand response to accommodate maximum PV power in a low-voltage distribution network is discussed. A centralized control based on model predictive control method is proposed for the computation of optimal demand response on an hourly basis. The proposed method uses PV...

Recurrent neural network based hybrid model for reconstructing gene regulatory network.

Science.gov (United States)

Raza, Khalid; Alam, Mansaf

2016-10-01

One of the exciting problems in systems biology research is to decipher how genome controls the development of complex biological system. The gene regulatory networks (GRNs) help in the identification of regulatory interactions between genes and offer fruitful information related to functional role of individual gene in a cellular system. Discovering GRNs lead to a wide range of applications, including identification of disease related pathways providing novel tentative drug targets, helps to predict disease response, and also assists in diagnosing various diseases including cancer. Reconstruction of GRNs from available biological data is still an open problem. This paper proposes a recurrent neural network (RNN) based model of GRN, hybridized with generalized extended Kalman filter for weight update in backpropagation through time training algorithm. The RNN is a complex neural network that gives a better settlement between biological closeness and mathematical flexibility to model GRN; and is also able to capture complex, non-linear and dynamic relationships among variables. Gene expression data are inherently noisy and Kalman filter performs well for estimation problem even in noisy data. Hence, we applied non-linear version of Kalman filter, known as generalized extended Kalman filter, for weight update during RNN training. The developed model has been tested on four benchmark networks such as DNA SOS repair network, IRMA network, and two synthetic networks from DREAM Challenge. We performed a comparison of our results with other state-of-the-art techniques which shows superiority of our proposed model. Further, 5% Gaussian noise has been induced in the dataset and result of the proposed model shows negligible effect of noise on results, demonstrating the noise tolerance capability of the model. Copyright © 2016 Elsevier Ltd. All rights reserved.

Response to Intervention for Specific Learning Disabilities Identification: The Impact of Graduate Preparation and Experience on Identification Consistency

Science.gov (United States)

Maki, Kathrin E.

2018-01-01

Response to intervention (RTI) is increasingly being implemented in schools as a means to identify students with specific learning disabilities (SLD). Despite its wide use, there is limited research regarding school psychologists' graduate preparation in and familiarity with RTI for SLD identification. This study examined how school psychologists'…

A Heterogeneous Wireless Identification Network for the Localization of Animals Based on Stochastic Movements

Directory of Open Access Journals (Sweden)

Ivana Raos

2009-05-01

Full Text Available The improvement in the transmission range in wireless applications without the use of batteries remains a significant challenge in identification applications. In this paper, we describe a heterogeneous wireless identification network mostly powered by kinetic energy, which allows the localization of animals in open environments. The system relies on radio communications and a global positioning system. It is made up of primary and secondary nodes. Secondary nodes are kinetic-powered and take advantage of animal movements to activate the node and transmit a specific identifier, reducing the number of batteries of the system. Primary nodes are battery-powered and gather secondary-node transmitted information to provide it, along with position and time data, to a final base station in charge of the animal monitoring. The system allows tracking based on contextual information obtained from statistical data.

An automatic microseismic or acoustic emission arrival identification scheme with deep recurrent neural networks

Science.gov (United States)

Zheng, Jing; Lu, Jiren; Peng, Suping; Jiang, Tianqi

2018-02-01

The conventional arrival pick-up algorithms cannot avoid the manual modification of the parameters for the simultaneous identification of multiple events under different signal-to-noise ratios (SNRs). Therefore, in order to automatically obtain the arrivals of multiple events with high precision under different SNRs, in this study an algorithm was proposed which had the ability to pick up the arrival of microseismic or acoustic emission events based on deep recurrent neural networks. The arrival identification was performed using two important steps, which included a training phase and a testing phase. The training process was mathematically modelled by deep recurrent neural networks using Long Short-Term Memory architecture. During the testing phase, the learned weights were utilized to identify the arrivals through the microseismic/acoustic emission data sets. The data sets were obtained by rock physics experiments of the acoustic emission. In order to obtain the data sets under different SNRs, this study added random noise to the raw experiments' data sets. The results showed that the outcome of the proposed method was able to attain an above 80 per cent hit-rate at SNR 0 dB, and an approximately 70 per cent hit-rate at SNR -5 dB, with an absolute error in 10 sampling points. These results indicated that the proposed method had high selection precision and robustness.

Synthesizing spatiotemporally sparse smartphone sensor data for bridge modal identification

Science.gov (United States)

Ozer, Ekin; Feng, Maria Q.

2016-08-01

Smartphones as vibration measurement instruments form a large-scale, citizen-induced, and mobile wireless sensor network (WSN) for system identification and structural health monitoring (SHM) applications. Crowdsourcing-based SHM is possible with a decentralized system granting citizens with operational responsibility and control. Yet, citizen initiatives introduce device mobility, drastically changing SHM results due to uncertainties in the time and the space domains. This paper proposes a modal identification strategy that fuses spatiotemporally sparse SHM data collected by smartphone-based WSNs. Multichannel data sampled with the time and the space independence is used to compose the modal identification parameters such as frequencies and mode shapes. Structural response time history can be gathered by smartphone accelerometers and converted into Fourier spectra by the processor units. Timestamp, data length, energy to power conversion address temporal variation, whereas spatial uncertainties are reduced by geolocation services or determining node identity via QR code labels. Then, parameters collected from each distributed network component can be extended to global behavior to deduce modal parameters without the need of a centralized and synchronous data acquisition system. The proposed method is tested on a pedestrian bridge and compared with a conventional reference monitoring system. The results show that the spatiotemporally sparse mobile WSN data can be used to infer modal parameters despite non-overlapping sensor operation schedule.

Signalling network construction for modelling plant defence response.

Directory of Open Access Journals (Sweden)

Dragana Miljkovic

Full Text Available Plant defence signalling response against various pathogens, including viruses, is a complex phenomenon. In resistant interaction a plant cell perceives the pathogen signal, transduces it within the cell and performs a reprogramming of the cell metabolism leading to the pathogen replication arrest. This work focuses on signalling pathways crucial for the plant defence response, i.e., the salicylic acid, jasmonic acid and ethylene signal transduction pathways, in the Arabidopsis thaliana model plant. The initial signalling network topology was constructed manually by defining the representation formalism, encoding the information from public databases and literature, and composing a pathway diagram. The manually constructed network structure consists of 175 components and 387 reactions. In order to complement the network topology with possibly missing relations, a new approach to automated information extraction from biological literature was developed. This approach, named Bio3graph, allows for automated extraction of biological relations from the literature, resulting in a set of (component1, reaction, component2 triplets and composing a graph structure which can be visualised, compared to the manually constructed topology and examined by the experts. Using a plant defence response vocabulary of components and reaction types, Bio3graph was applied to a set of 9,586 relevant full text articles, resulting in 137 newly detected reactions between the components. Finally, the manually constructed topology and the new reactions were merged to form a network structure consisting of 175 components and 524 reactions. The resulting pathway diagram of plant defence signalling represents a valuable source for further computational modelling and interpretation of omics data. The developed Bio3graph approach, implemented as an executable language processing and graph visualisation workflow, is publically available at http://ropot.ijs.si/bio3graph/and can be

Identification and control of plasma vertical position using neural network in Damavand tokamak

International Nuclear Information System (INIS)

Rasouli, H.; Rasouli, C.; Koohi, A.

2013-01-01

In this work, a nonlinear model is introduced to determine the vertical position of the plasma column in Damavand tokamak. Using this model as a simulator, a nonlinear neural network controller has been designed. In the first stage, the electronic drive and sensory circuits of Damavand tokamak are modified. These circuits can control the vertical position of the plasma column inside the vacuum vessel. Since the vertical position of plasma is an unstable parameter, a direct closed loop system identification algorithm is performed. In the second stage, a nonlinear model is identified for plasma vertical position, based on the multilayer perceptron (MLP) neural network (NN) structure. Estimation of simulator parameters has been performed by back-propagation error algorithm using Levenberg–Marquardt gradient descent optimization technique. The model is verified through simulation of the whole closed loop system using both simulator and actual plant in similar conditions. As the final stage, a MLP neural network controller is designed for simulator model. In the last step, online training is performed to tune the controller parameters. Simulation results justify using of the NN controller for the actual plant.

Identification and control of plasma vertical position using neural network in Damavand tokamak

Energy Technology Data Exchange (ETDEWEB)

Rasouli, H. [School of Plasma Physics and Nuclear Fusion, Institute of Nuclear Science and Technology, AEOI, P.O. Box 14155-1339, Tehran (Iran, Islamic Republic of); Advanced Process Automation and Control (APAC) Research Group, Faculty of Electrical Engineering, K.N. Toosi University of Technology, P.O. Box 16315-1355, Tehran (Iran, Islamic Republic of); Rasouli, C.; Koohi, A. [School of Plasma Physics and Nuclear Fusion, Institute of Nuclear Science and Technology, AEOI, P.O. Box 14155-1339, Tehran (Iran, Islamic Republic of)

2013-02-15

In this work, a nonlinear model is introduced to determine the vertical position of the plasma column in Damavand tokamak. Using this model as a simulator, a nonlinear neural network controller has been designed. In the first stage, the electronic drive and sensory circuits of Damavand tokamak are modified. These circuits can control the vertical position of the plasma column inside the vacuum vessel. Since the vertical position of plasma is an unstable parameter, a direct closed loop system identification algorithm is performed. In the second stage, a nonlinear model is identified for plasma vertical position, based on the multilayer perceptron (MLP) neural network (NN) structure. Estimation of simulator parameters has been performed by back-propagation error algorithm using Levenberg-Marquardt gradient descent optimization technique. The model is verified through simulation of the whole closed loop system using both simulator and actual plant in similar conditions. As the final stage, a MLP neural network controller is designed for simulator model. In the last step, online training is performed to tune the controller parameters. Simulation results justify using of the NN controller for the actual plant.

Efficient identification of critical residues based only on protein structure by network analysis.

Directory of Open Access Journals (Sweden)

Michael P Cusack

2007-05-01

Full Text Available Despite the increasing number of published protein structures, and the fact that each protein's function relies on its three-dimensional structure, there is limited access to automatic programs used for the identification of critical residues from the protein structure, compared with those based on protein sequence. Here we present a new algorithm based on network analysis applied exclusively on protein structures to identify critical residues. Our results show that this method identifies critical residues for protein function with high reliability and improves automatic sequence-based approaches and previous network-based approaches. The reliability of the method depends on the conformational diversity screened for the protein of interest. We have designed a web site to give access to this software at http://bis.ifc.unam.mx/jamming/. In summary, a new method is presented that relates critical residues for protein function with the most traversed residues in networks derived from protein structures. A unique feature of the method is the inclusion of the conformational diversity of proteins in the prediction, thus reproducing a basic feature of the structure/function relationship of proteins.

Responses to olfactory signals reflect network structure of flower-visitor interactions.

Science.gov (United States)

Junker, Robert R; Höcherl, Nicole; Blüthgen, Nico

2010-07-01

1. Network analyses provide insights into the diversity and complexity of ecological interactions and have motivated conclusions about community stability and co-evolution. However, biological traits and mechanisms such as chemical signals regulating the interactions between individual species--the microstructure of a network--are poorly understood. 2. We linked the responses of receivers (flower visitors) towards signals (flower scent) to the structure of a highly diverse natural flower-insect network. For each interaction, we define link temperature--a newly developed metric--as the deviation of the observed interaction strength from neutrality, assuming that animals randomly interact with flowers. 3. Link temperature was positively correlated to the specific visitors' responses to floral scents, experimentally examined in a mobile olfactometer. Thus, communication between plants and consumers via phytochemical signals reflects a significant part of the microstructure in a complex network. Negative as well as positive responses towards floral scents contributed to these results, where individual experience was important apart from innate behaviour. 4. Our results indicate that: (1) biological mechanisms have a profound impact on the microstructure of complex networks that underlies the outcome of aggregate statistics, and (2) floral scents act as a filter, promoting the visitation of some flower visitors, but also inhibiting the visitation of others.

IAEA Response and Assistance Network. Date Effective: 1 September 2013

International Nuclear Information System (INIS)

2013-01-01

The Parties to the Convention on Assistance in the Case of a Nuclear Accident or Radiological Emergency (the 'Assistance Convention') have undertaken to cooperate between themselves and with the IAEA to facilitate the timely provision of assistance in the case of a nuclear accident or radiological emergency, in order to mitigate its consequences. In September 2000, the General Conference of the IAEA, in resolution GC(44)/RES/16, encouraged Member States ''to implement instruments for improving their response, in particular their contribution to international response, to nuclear and radiological emergencies'' as well as ''to participate actively in the process of strengthening international, national and regional capabilities for responding to nuclear and radiological emergencies and to make those capabilities more consistent and coherent''. As part of the IAEA's strategy for supporting the practical implementation of the Assistance Convention, in 2000 the IAEA Secretariat established a global Emergency Response Network (ERNET) of teams suitably qualified to respond to nuclear or radiological emergencies rapidly and, in principle, on a regional basis. The IAEA Secretariat published IAEA Emergency Response Network - ERNET (EPR-ERNET) in 2000, which set out the criteria and requirements to be met by members of the network. An updated edition was published in 2002. The Second Meeting of the Representatives of Competent Authorities Identified under the Convention on Early Notification of a Nuclear Accident and the Convention on Assistance in the Case of a Nuclear Accident or Radiological Emergency, held in Vienna in June 2003, recommended that the IAEA Secretariat convene a Technical Meeting to formulate recommendations aimed at improving participation in the network. Participants in a Technical Meeting held in March 2004 developed a new concept for the network and a completely new draft of the publication. In July 2005, the Third Meeting of Competent Authorities

Effects of the network structure and coupling strength on the noise-induced response delay of a neuronal network

International Nuclear Information System (INIS)

Ozer, Mahmut; Uzuntarla, Muhammet

2008-01-01

The Hodgkin-Huxley (H-H) neuron model driven by stimuli just above threshold shows a noise-induced response delay with respect to time to the first spike for a certain range of noise strengths, an effect called 'noise delayed decay' (NDD). We study the response time of a network of coupled H-H neurons, and investigate how the NDD can be affected by the connection topology of the network and the coupling strength. We show that the NDD effect exists for weak and intermediate coupling strengths, whereas it disappears for strong coupling strength regardless of the connection topology. We also show that although the network structure has very little effect on the NDD for a weak coupling strength, the network structure plays a key role for an intermediate coupling strength by decreasing the NDD effect with the increasing number of random shortcuts, and thus provides an additional operating regime, that is absent in the regular network, in which the neurons may also exploit a spike time code

Identification and expression analysis of cold and freezing stress responsive genes of Brassica oleracea.

Science.gov (United States)

Ahmed, Nasar Uddin; Jung, Hee-Jeong; Park, Jong-In; Cho, Yong-Gu; Hur, Yoonkang; Nou, Ill-Sup

2015-01-10

Cold and freezing stress is a major environmental constraint to the production of Brassica crops. Enhancement of tolerance by exploiting cold and freezing tolerance related genes offers the most efficient approach to address this problem. Cold-induced transcriptional profiling is a promising approach to the identification of potential genes related to cold and freezing stress tolerance. In this study, 99 highly expressed genes were identified from a whole genome microarray dataset of Brassica rapa. Blast search analysis of the Brassica oleracea database revealed the corresponding homologous genes. To validate their expression, pre-selected cold tolerant and susceptible cabbage lines were analyzed. Out of 99 BoCRGs, 43 were differentially expressed in response to varying degrees of cold and freezing stress in the contrasting cabbage lines. Among the differentially expressed genes, 18 were highly up-regulated in the tolerant lines, which is consistent with their microarray expression. Additionally, 12 BoCRGs were expressed differentially after cold stress treatment in two contrasting cabbage lines, and BoCRG54, 56, 59, 62, 70, 72 and 99 were predicted to be involved in cold regulatory pathways. Taken together, the cold-responsive genes identified in this study provide additional direction for elucidating the regulatory network of low temperature stress tolerance and developing cold and freezing stress resistant Brassica crops. Copyright © 2014 Elsevier B.V. All rights reserved.

Exploiting Hidden Layer Responses of Deep Neural Networks for Language Recognition

Science.gov (United States)

2016-09-08

Target Languages Arabic (ara) Egyptian , Iraqi, Levantine, Maghrebi,Modern Standard Chinese (chi) Cantonese, Mandarin, Min, Wu English (eng) British...Frame-by-frame DNN classification x1 x2 x3 xT-­1xT Figure 1: Frame-by-frame DNN Language Identification Figure 1 shows the architecture of the DNN...compare direct DNN system with proposed DNN I-vector system, we trained a single neural network to classify all 20 languages. The architecture of this

A network identity authentication protocol of bank account system based on fingerprint identification and mixed encryption

Science.gov (United States)

Zhu, Lijuan; Liu, Jingao

2013-07-01

This paper describes a network identity authentication protocol of bank account system based on fingerprint identification and mixed encryption. This protocol can provide every bank user a safe and effective way to manage his own bank account, and also can effectively prevent the hacker attacks and bank clerk crime, so that it is absolute to guarantee the legitimate rights and interests of bank users.

Identification of crystalline structures using Moessbauer parameters and artificial neural network

International Nuclear Information System (INIS)

Salles, E.O.T.; Souza Junior, P.A. De; Garg, V.K.

1995-01-01

Moessbauer spectroscopy is a useful technique for characterizing the valences, electronic and magnetic states, coordination symmetric and site occupancies of Fe cations. The Moessbauer parameters of Isomer Shift (I.S.) and Quadrupole Splitting (Q.S.) are useful to distinguish paramagnetic ferrous and ferric ions in several substances, while the internal magnetic field provides information on the crystallinity. A correlation is being sought between Moessbauer parameters and several structure properties of some iron-containing minerals using Artificial Neural Networks (ANN). Distinct regions of crystalline structures are defined when any two parameters are plotted, but in several cases superposition of these regions leads to erroneous conclusions. We have tried to eliminate this difficulty by using convenient axes. These axes form n-dimensional vectors as input to our ANN. In recent years ANN has shown to be a powerful technique to solve problems as pattern recognition, optimization, preview ups and downs in stock market, automatic control and identification of a mineral from a Moessbauer spectrum of Moessbauer data bank. Using ANN we have been successful in identification of crystalline structures from plots of Moessbauer spectral parameters of I.S., Q.S., and structure using Moessbauer parameters of I.S., Q.S., and polyhedral volume of a coordination site are presented. (author) 28 refs.; 4 figs.; 2 tabs

Identification of tipping elements of the Indian Summer Monsoon using climate network approach

Science.gov (United States)

Stolbova, Veronika; Surovyatkina, Elena; Kurths, Jurgen

2015-04-01

Spatial and temporal variability of the rainfall is a vital question for more than one billion of people inhabiting the Indian subcontinent. Indian Summer Monsoon (ISM) rainfall is crucial for India's economy, social welfare, and environment and large efforts are being put into predicting the Indian Summer Monsoon. For predictability of the ISM, it is crucial to identify tipping elements - regions over the Indian subcontinent which play a key role in the spatial organization of the Indian monsoon system. Here, we use climate network approach for identification of such tipping elements of the ISM. First, we build climate networks of the extreme rainfall, surface air temperature and pressure over the Indian subcontinent for pre-monsoon, monsoon and post-monsoon seasons. We construct network of extreme rainfall event using observational satellite data from 1998 to 2012 from the Tropical Rainfall Measuring Mission (TRMM 3B42V7) and reanalysis gridded daily rainfall data for a time period of 57 years (1951-2007) (Asian Precipitation Highly Resolved Observational Data Integration Towards the Evaluation of Water Resources, APHRODITE). For the network of surface air temperature and pressure fields, we use re-analysis data provided by the National Center for Environmental Prediction and National Center for Atmospheric Research (NCEP/NCAR). Second, we filter out data by coarse-graining the network through network measures, and identify tipping regions of the ISM. Finally, we compare obtained results of the network analysis with surface wind fields and show that occurrence of the tipping elements is mostly caused by monsoonal wind circulation, migration of the Intertropical Convergence Zone (ITCZ) and Westerlies. We conclude that climate network approach enables to select the most informative regions for the ISM, providing realistic description of the ISM dynamics with fewer data, and also help to identify tipping regions of the ISM. Obtained tipping elements deserve a

Application of artificial intelligence to electrofacies identification: neural networks versus discriminant analysis; Aplicacao de inteligencia artificial na identificacao de eletrofacies redes neuroniais versus analise discriminante

Energy Technology Data Exchange (ETDEWEB)

Silva Rodrigues, F da [PETROBRAS, Rio de Janeiro, RJ (Brazil); Queiroz Neto, I.A. de [PETROBRAS, Rio de Janeiro, RJ (Brazil). Centro de Pesquisas

1992-07-01

Electro-facies are identified by neural network trained with well log and core data. Differences between neural network and expert system are discussed. According the author, the combination of neural network computing and traditional computing methods, like discriminant analysis, can help in the solution of many problems in electro-facies identification. 5 figs., 1 tab., 11 refs.

Characterizing root response phenotypes by neural network analysis

OpenAIRE

Hatzig, Sarah V.; Schiessl, Sarah; Stahl, Andreas; Snowdon, Rod J.

2015-01-01

Roots play an immediate role as the interface for water acquisition. To improve sustainability in low-water environments, breeders of major crops must therefore pay closer attention to advantageous root phenotypes; however, the complexity of root architecture in response to stress can be difficult to quantify. Here, the Sholl method, an established technique from neurobiology used for the characterization of neural network anatomy, was adapted to more adequately describe root responses to osm...

A Study of Recurrent and Convolutional Neural Networks in the Native Language Identification Task

KAUST Repository

Werfelmann, Robert

2018-05-24

Native Language Identification (NLI) is the task of predicting the native language of an author from their text written in a second language. The idea is to find writing habits that transfer from an author’s native language to their second language. Many approaches to this task have been studied, from simple word frequency analysis, to analyzing grammatical and spelling mistakes to find patterns and traits that are common between different authors of the same native language. This can be a very complex task, depending on the native language and the proficiency of the author’s second language. The most common approach that has seen very good results is based on the usage of n-gram features of words and characters. In this thesis, we attempt to extract lexical, grammatical, and semantic features from the sentences of non-native English essays using neural networks. The training and testing data was obtained from a large corpus of publicly available essays written by authors of several countries around the world. The neural network models consisted of Long Short-Term Memory and Convolutional networks using the sentences of each document as the input. Additional statistical features were generated from the text to complement the predictions of the neural networks, which were then used as feature inputs to a Support Vector Machine, making the final prediction. Results show that Long Short-Term Memory neural network can improve performance over a naive bag of words approach, but with a much smaller feature set. With more fine-tuning of neural network hyperparameters, these results will likely improve significantly.

Development of the Real Time Situation Identification Model for Adaptive Service Support in Vehicular Communication Networks Domain

Directory of Open Access Journals (Sweden)

Mindaugas Kurmis

2013-01-01

Full Text Available The article discusses analyses and assesses the key proposals how to deal with the situation identification for the heterogeneous service support in vehicular cooperation environment. This is one of the most important topics of the pervasive computing. Without the solution it is impossible to adequately respond to the user's needs and to provide needed services in the right place at the right moment and in the right way. In this work we present our developed real time situation identification model for adaptive service support in vehicular communication networks domain. Our solution is different from the others as it uses additional virtual context information source - information from other vehicles which for our knowledge is not addressed in the past. The simulation results show the promising context exchange rate between vehicles. The other vehicles provided additional context source in our developed model helps to increase situations identification level.

EEG signal classification using PSO trained RBF neural network for epilepsy identification

Directory of Open Access Journals (Sweden)

Sandeep Kumar Satapathy

Full Text Available The electroencephalogram (EEG is a low amplitude signal generated in the brain, as a result of information flow during the communication of several neurons. Hence, careful analysis of these signals could be useful in understanding many human brain disorder diseases. One such disease topic is epileptic seizure identification, which can be identified via a classification process of the EEG signal after preprocessing with the discrete wavelet transform (DWT. To classify the EEG signal, we used a radial basis function neural network (RBFNN. As shown herein, the network can be trained to optimize the mean square error (MSE by using a modified particle swarm optimization (PSO algorithm. The key idea behind the modification of PSO is to introduce a method to overcome the problem of slow searching in and around the global optimum solution. The effectiveness of this procedure was verified by an experimental analysis on a benchmark dataset which is publicly available. The result of our experimental analysis revealed that the improvement in the algorithm is significant with respect to RBF trained by gradient descent and canonical PSO. Here, two classes of EEG signals were considered: the first being an epileptic and the other being non-epileptic. The proposed method produced a maximum accuracy of 99% as compared to the other techniques. Keywords: Electroencephalography, Radial basis function neural network, Particle swarm optimization, Discrete wavelet transform, Machine learning

Time response of temperature sensors using neural networks

International Nuclear Information System (INIS)

Santos, Roberto Carlos dos

2010-01-01

In a PWR nuclear power plant, the primary coolant temperature and feedwater temperature are measured using RTDs (Resistance Temperature Detectors). These RTDs typically feed the plant's control and safety systems and must, therefore, be very accurate and have good dynamic performance. The response time of RTDs is characterized by a single parameter called the Plunge Time Constant defined as the time it takes the sensor output to achieve 63.2 percent of its final value after a step change in temperature. Nuclear reactor service conditions are difficult to reproduce in the laboratory, and an in-situ test method called LCSR (Loop Current Step Response) test was developed to measure remotely the response time of RTDs. >From this test, the time constant of the sensor is identified by means of the LCSR transformation that involves the dynamic response modal time constants determination using a nodal heat-transfer model. This calculation is not simple and requires specialized personnel. For this reason an Artificial Neural Network has been developed to predict the time constant of RTD from LCSR test transient. It eliminates the transformations involved in the LCSR application. A series of LCSR tests on RTDs generates the response transients of the sensors, the input data of the networks. Plunge tests are used to determine the time constants of the RTDs, the desired output of the ANN, trained using these sets of input/output data. This methodology was firstly applied to theoretical data simulating 10 RTDs with different time constant values, resulting in an average error of about 0.74 %. Experimental data from three different RTDs was used to predict time constant resulting in a maximum error of 3,34 %. The time constants values predicted from ANN were compared with those obtained from traditional way resulting in an average error of about 18 % and that shows the network is able to predict accurately the sensor time constant. (author)

IMPLICATIONS OF SOCIAL RESPONSIBILITY DISCLOSURE ON GLOBAL PRODUCTION NETWORK

OpenAIRE

Le Bo; Dan Shen; Jin Jun Bo

2014-01-01

This paper aims to discuss effectiveness of social responsibility disclosure in promoting global production network. Through a critical review on the theoretical development from supply chain to global production network, the global supply chain management of Apple Inc., as a case, is investigated, with focus on corporate and NGOs’ social disclosure on the environmental and labor rights' issues of its suppliers in China. The paper concludes that effectiveness of corporate social disclosure on...

Subspace identification of distributed clusters of homogeneous systems

NARCIS (Netherlands)

Yu, C.; Verhaegen, M.H.G.

2017-01-01

This note studies the identification of a network comprised of interconnected clusters of LTI systems. Each cluster consists of homogeneous dynamical systems, and its interconnections with the rest of the network are unmeasurable. A subspace identification method is proposed for identifying a single

Simulating Quantitative Cellular Responses Using Asynchronous Threshold Boolean Network Ensembles

Directory of Open Access Journals (Sweden)

Shah Imran

2011-07-01

Full Text Available Abstract Background With increasing knowledge about the potential mechanisms underlying cellular functions, it is becoming feasible to predict the response of biological systems to genetic and environmental perturbations. Due to the lack of homogeneity in living tissues it is difficult to estimate the physiological effect of chemicals, including potential toxicity. Here we investigate a biologically motivated model for estimating tissue level responses by aggregating the behavior of a cell population. We assume that the molecular state of individual cells is independently governed by discrete non-deterministic signaling mechanisms. This results in noisy but highly reproducible aggregate level responses that are consistent with experimental data. Results We developed an asynchronous threshold Boolean network simulation algorithm to model signal transduction in a single cell, and then used an ensemble of these models to estimate the aggregate response across a cell population. Using published data, we derived a putative crosstalk network involving growth factors and cytokines - i.e., Epidermal Growth Factor, Insulin, Insulin like Growth Factor Type 1, and Tumor Necrosis Factor α - to describe early signaling events in cell proliferation signal transduction. Reproducibility of the modeling technique across ensembles of Boolean networks representing cell populations is investigated. Furthermore, we compare our simulation results to experimental observations of hepatocytes reported in the literature. Conclusion A systematic analysis of the results following differential stimulation of this model by growth factors and cytokines suggests that: (a using Boolean network ensembles with asynchronous updating provides biologically plausible noisy individual cellular responses with reproducible mean behavior for large cell populations, and (b with sufficient data our model can estimate the response to different concentrations of extracellular ligands. Our

Blind identification of the number of sub-carriers for orthogonal frequency division multiplexing-based elastic optical networking

Science.gov (United States)

Zhao, Lei; Xu, Hengying; Bai, Chenglin

2018-03-01

In orthogonal frequency division multiplexing (OFDM)-based elastic optical networking (EON), it is imperative to identify unknown parameters of OFDM-based EON signals quickly, intelligently and robustly. Because the number of sub-carriers determines the size of the sub-carriers spacing and then affects the symbol period of the OFDM and the anti-dispersion capability of the system, the identification of the number of sub-carriers has a profound effect on the identification of other key parameters of the system. In this paper, we proposed a method of number identification for sub-carriers of OFDM-based EON signals with help of high-order cyclic cumulant. The specific fourth-order cyclic cumulant exists only at the location of its sub-carriers frequencies. So the identification of the number of sub-carriers can be implemented by detecting the cyclic-frequencies. The proposed scheme in our study can be divided into three sub-stages, i.e. estimating the spectral range, calculating the high-order cyclic cumulant and identifying the number of sub-carriers. When the optical signal-to-noise ratios (OSNR) varied from 16dB to 22dB, the number of sub-carriers (64-512) was successfully identified in the experiment, and from the statistical point of view, the average identification absolute accuracy (IAAs) exceeded 94%.

Representation of neutron noise data using neural networks

International Nuclear Information System (INIS)

Korsah, K.; Damiano, B.; Wood, R.T.

1992-01-01

This paper describes a neural network-based method of representing neutron noise spectra using a model developed at the Oak Ridge National Laboratory (ORNL). The backpropagation neural network learned to represent neutron noise data in terms of four descriptors, and the network response matched calculated values to within 3.5 percent. These preliminary results are encouraging, and further research is directed towards the application of neural networks in a diagnostics system for the identification of the causes of changes in structural spectral resonances. This work is part of our current investigation of advanced technologies such as expert systems and neural networks for neutron noise data reduction, analysis, and interpretation. The objective is to improve the state-of-the-art of noise analysis as a diagnostic tool for nuclear power plants and other mechanical systems

Brain network response underlying decisions about abstract reinforcers.

Science.gov (United States)

Mills-Finnerty, Colleen; Hanson, Catherine; Hanson, Stephen Jose

2014-12-01

Decision making studies typically use tasks that involve concrete action-outcome contingencies, in which subjects do something and get something. No studies have addressed decision making involving abstract reinforcers, where there are no action-outcome contingencies and choices are entirely hypothetical. The present study examines these kinds of choices, as well as whether the same biases that exist for concrete reinforcer decisions, specifically framing effects, also apply during abstract reinforcer decisions. We use both General Linear Model as well as Bayes network connectivity analysis using the Independent Multi-sample Greedy Equivalence Search (IMaGES) algorithm to examine network response underlying choices for abstract reinforcers under positive and negative framing. We find for the first time that abstract reinforcer decisions activate the same network of brain regions as concrete reinforcer decisions, including the striatum, insula, anterior cingulate, and VMPFC, results that are further supported via comparison to a meta-analysis of decision making studies. Positive and negative framing activated different parts of this network, with stronger activation in VMPFC during negative framing and in DLPFC during positive, suggesting different decision making pathways depending on frame. These results were further clarified using connectivity analysis, which revealed stronger connections between anterior cingulate, insula, and accumbens during negative framing compared to positive. Taken together, these results suggest that not only do abstract reinforcer decisions rely on the same brain substrates as concrete reinforcers, but that the response underlying framing effects on abstract reinforcers also resemble those for concrete reinforcers, specifically increased limbic system connectivity during negative frames. Copyright © 2014 Elsevier Inc. All rights reserved.

Neural networks based identification and compensation of rate-dependent hysteresis in piezoelectric actuators

International Nuclear Information System (INIS)

Zhang, Xinliang; Tan, Yonghong; Su, Miyong; Xie, Yangqiu

2010-01-01

This paper presents a method of the identification for the rate-dependent hysteresis in the piezoelectric actuator (PEA) by use of neural networks. In this method, a special hysteretic operator is constructed from the Prandtl-Ishlinskii (PI) model to extract the changing tendency of the static hysteresis. Then, an expanded input space is constructed by introducing the proposed hysteretic operator to transform the multi-valued mapping of the hysteresis into a one-to-one mapping. Thus, a feedforward neural network is applied to the approximation of the rate-independent hysteresis on the constructed expanded input space. Moreover, in order to describe the rate-dependent performance of the hysteresis, a special hybrid model, which is constructed by a linear auto-regressive exogenous input (ARX) sub-model preceded with the previously obtained neural network based rate-independent hysteresis sub-model, is proposed. For the compensation of the effect of the hysteresis in PEA, the PID feedback controller with a feedforward hysteresis compensator is developed for the tracking control of the PEA. Thus, a corresponding inverse model based on the proposed modeling method is developed for the feedforward hysteresis compensator. Finally, both simulations and experimental results on piezoelectric actuator are presented to verify the effectiveness of the proposed approach for the rate-dependent hysteresis.

Response times in a two-node queueing network with feedback

NARCIS (Netherlands)

van der Mei, R.D.; Gijsen, B.M.M.; in 't Veld, N.; van den Berg, J.L.

2002-01-01

The study presented in this paper is motivated by the performance analysis of response times in distributed information systems, where transactions are handled by iterative server and database actions. We model system response times as sojourn times in a two-node open queueing network with a

Response times in a two-node queueing network with feedback

NARCIS (Netherlands)

van der Mei, R.D.; Gijsen, B.M.M.; Gijsen, B.M.M.; in 't Veld, N.; van den Berg, Hans Leo

The study presented in this paper is motivated by the performance analysis of response times in distributed information systems, where transactions are handled by iterative server and database actions. We model system response times as sojourn times in a two-node open queueing network with a

Prefrontal mediation of the reading network predicts intervention response in dyslexia.

Science.gov (United States)

Aboud, Katherine S; Barquero, Laura A; Cutting, Laurie E

2018-04-01

A primary challenge facing the development of interventions for dyslexia is identifying effective predictors of intervention response. While behavioral literature has identified core cognitive characteristics of response, the distinction of reading versus executive cognitive contributions to response profiles remains unclear, due in part to the difficulty of segregating these constructs using behavioral outputs. In the current study we used functional neuroimaging to piece apart the mechanisms of how/whether executive and reading network relationships are predictive of intervention response. We found that readers who are responsive to intervention have more typical pre-intervention functional interactions between executive and reading systems compared to nonresponsive readers. These findings suggest that intervention response in dyslexia is influenced not only by domain-specific reading regions, but also by contributions from intervening domain-general networks. Our results make a significant gain in identifying predictive bio-markers of outcomes in dyslexia, and have important implications for the development of personalized clinical interventions. Copyright © 2018 Elsevier Ltd. All rights reserved.

Plasticity of the MAPK signaling network in response to mechanical stress.

Directory of Open Access Journals (Sweden)

Andrea M Pereira

Full Text Available Cells display versatile responses to mechanical inputs and recent studies have identified the mitogen-activated protein kinase (MAPK cascades mediating the biological effects observed upon mechanical stimulation. Although, MAPK pathways can act insulated from each other, several mechanisms facilitate the crosstalk between the components of these cascades. Yet, the combinatorial complexity of potential molecular interactions between these elements have prevented the understanding of their concerted functions. To analyze the plasticity of the MAPK signaling network in response to mechanical stress we performed a non-saturating epistatic screen in resting and stretched conditions employing as readout a JNK responsive dJun-FRET biosensor. By knocking down MAPKs, and JNK pathway regulators, singly or in pairs in Drosophila S2R+ cells, we have uncovered unexpected regulatory links between JNK cascade kinases, Rho GTPases, MAPKs and the JNK phosphatase Puc. These relationships have been integrated in a system network model at equilibrium accounting for all experimentally validated interactions. This model allows predicting the global reaction of the network to its modulation in response to mechanical stress. It also highlights its context-dependent sensitivity.

A Game-Theoretic Response Strategy for Coordinator Attack in Wireless Sensor Networks

Science.gov (United States)

Liu, Jianhua; Yue, Guangxue; Shang, Huiliang; Li, Hongjie

2014-01-01

The coordinator is a specific node that controls the whole network and has a significant impact on the performance in cooperative multihop ZigBee wireless sensor networks (ZWSNs). However, the malicious node attacks coordinator nodes in an effort to waste the resources and disrupt the operation of the network. Attacking leads to a failure of one round of communication between the source nodes and destination nodes. Coordinator selection is a technique that can considerably defend against attack and reduce the data delivery delay, and increase network performance of cooperative communications. In this paper, we propose an adaptive coordinator selection algorithm using game and fuzzy logic aiming at both minimizing the average number of hops and maximizing network lifetime. The proposed game model consists of two interrelated formulations: a stochastic game for dynamic defense and a best response policy using evolutionary game formulation for coordinator selection. The stable equilibrium best policy to response defense is obtained from this game model. It is shown that the proposed scheme can improve reliability and save energy during the network lifetime with respect to security. PMID:25105171

IAEA Response and Assistance Network. Date Effective: 1 January 2011

International Nuclear Information System (INIS)

2010-01-01

This publication is a tool for (1) supporting the provision of international assistance in the event of a nuclear or radiological incident or emergency, (2) cooperation between States, their competent authorities and the IAEA, and (3) harmonization of response capabilities of States offering assistance under the Response and Assistance Network (RANET). The publication may also assist competent authorities and other response organizations in their efforts to establish and/or maintain their own response capabilities.

Identification of Wheat Varieties Using Matrix-assisted Laser Desorption/Ionisation Time-of-flight Mass Spectrometry and an Artificial Neural network

DEFF Research Database (Denmark)

Bloch, Helle Aagaard; Kesmir, Can; Petersen, Marianne Kjerstine

1999-01-01

A novel tool for variety identification of wheat (Triticum aestivum L,) has been developed: an artificial neural network (ANN) is used to classify the gliadin fraction analysed by matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry (MALDI-TOFMS). The robustness...

[Rapid Identification of Epicarpium Citri Grandis via Infrared Spectroscopy and Fluorescence Spectrum Imaging Technology Combined with Neural Network].

Science.gov (United States)

Pan, Sha-sha; Huang, Fu-rong; Xiao, Chi; Xian, Rui-yi; Ma, Zhi-guo

2015-10-01

To explore rapid reliable methods for detection of Epicarpium citri grandis (ECG), the experiment using Fourier Transform Attenuated Total Reflection Infrared Spectroscopy (FTIR/ATR) and Fluorescence Spectrum Imaging Technology combined with Multilayer Perceptron (MLP) Neural Network pattern recognition, for the identification of ECG, and the two methods are compared. Infrared spectra and fluorescence spectral images of 118 samples, 81 ECG and 37 other kinds of ECG, are collected. According to the differences in tspectrum, the spectra data in the 550-1 800 cm(-1) wavenumber range and 400-720 nm wavelength are regarded as the study objects of discriminant analysis. Then principal component analysis (PCA) is applied to reduce the dimension of spectroscopic data of ECG and MLP Neural Network is used in combination to classify them. During the experiment were compared the effects of different methods of data preprocessing on the model: multiplicative scatter correction (MSC), standard normal variable correction (SNV), first-order derivative(FD), second-order derivative(SD) and Savitzky-Golay (SG). The results showed that: after the infrared spectra data via the Savitzky-Golay (SG) pretreatment through the MLP Neural Network with the hidden layer function as sigmoid, we can get the best discrimination of ECG, the correct percent of training set and testing set are both 100%. Using fluorescence spectral imaging technology, corrected by the multiple scattering (MSC) results in the pretreatment is the most ideal. After data preprocessing, the three layers of the MLP Neural Network of the hidden layer function as sigmoid function can get 100% correct percent of training set and 96.7% correct percent of testing set. It was shown that the FTIR/ATR and fluorescent spectral imaging technology combined with MLP Neural Network can be used for the identification study of ECG and has the advantages of rapid, reliable effect.

Phase-response curves and synchronized neural networks.

Science.gov (United States)

Smeal, Roy M; Ermentrout, G Bard; White, John A

2010-08-12

We review the principal assumptions underlying the application of phase-response curves (PRCs) to synchronization in neuronal networks. The PRC measures how much a given synaptic input perturbs spike timing in a neural oscillator. Among other applications, PRCs make explicit predictions about whether a given network of interconnected neurons will synchronize, as is often observed in cortical structures. Regarding the assumptions of the PRC theory, we conclude: (i) The assumption of noise-tolerant cellular oscillations at or near the network frequency holds in some but not all cases. (ii) Reduced models for PRC-based analysis can be formally related to more realistic models. (iii) Spike-rate adaptation limits PRC-based analysis but does not invalidate it. (iv) The dependence of PRCs on synaptic location emphasizes the importance of improving methods of synaptic stimulation. (v) New methods can distinguish between oscillations that derive from mutual connections and those arising from common drive. (vi) It is helpful to assume linear summation of effects of synaptic inputs; experiments with trains of inputs call this assumption into question. (vii) Relatively subtle changes in network structure can invalidate PRC-based predictions. (viii) Heterogeneity in the preferred frequencies of component neurons does not invalidate PRC analysis, but can annihilate synchronous activity.

Selected Flight Test Results for Online Learning Neural Network-Based Flight Control System

Science.gov (United States)

Williams-Hayes, Peggy S.

2004-01-01

The NASA F-15 Intelligent Flight Control System project team developed a series of flight control concepts designed to demonstrate neural network-based adaptive controller benefits, with the objective to develop and flight-test control systems using neural network technology to optimize aircraft performance under nominal conditions and stabilize the aircraft under failure conditions. This report presents flight-test results for an adaptive controller using stability and control derivative values from an online learning neural network. A dynamic cell structure neural network is used in conjunction with a real-time parameter identification algorithm to estimate aerodynamic stability and control derivative increments to baseline aerodynamic derivatives in flight. This open-loop flight test set was performed in preparation for a future phase in which the learning neural network and parameter identification algorithm output would provide the flight controller with aerodynamic stability and control derivative updates in near real time. Two flight maneuvers are analyzed - pitch frequency sweep and automated flight-test maneuver designed to optimally excite the parameter identification algorithm in all axes. Frequency responses generated from flight data are compared to those obtained from nonlinear simulation runs. Flight data examination shows that addition of flight-identified aerodynamic derivative increments into the simulation improved aircraft pitch handling qualities.

Response Time Test for The Application of the Data Communication Network to Nuclear Power Plant

International Nuclear Information System (INIS)

Shin, Y.C.; Lee, J.Y.; Park, H.Y.; Seong, S.H.; Chung, H.Y.

2002-01-01

This paper discusses the response time test for the application of the Data Communication Network (DCN) to Nuclear Power Plant (NPP). Conventional Instrumentation and Control (I and C) Systems using the analog technology in NPP have raised many problems regarding the lack of spare parts, maintenance burden, inaccuracy, etc.. In order to solve the problems, the Korean Next Generation Reactor (KNGR) I and C system has adopted the digital technology and new design features of using the data communication networks. It is essential to prove the response time requirements that arise from the introduction of digital I and C technology and data communication networks to nuclear power plant design. For the response time test, a high reliable data communication network structure has been developed to meet the requirements of redundancy, diversity, and segmentation. This paper presents the results of network load analysis and response time test for the KNGR DCN prototype. The test has been focused on the response time from the field components to the gateway because the response times from the gateway to the specific systems are similar to those of the existing design. It is verified that the response time requirements are met through the prototype test for KNGR I and C systems. (authors)

Border detection in complex networks

International Nuclear Information System (INIS)

Travencolo, Bruno A N; Viana, Matheus Palhares; Costa, Luciano da Fontoura

2009-01-01

One important issue implied by the finite nature of real-world networks regards the identification of their more external (border) and internal nodes. The present work proposes a formal and objective definition of these properties, founded on the recently introduced concept of node diversity. It is shown that this feature does not exhibit any relevant correlation with several well-established complex networks measurements. A methodology for the identification of the borders of complex networks is described and illustrated with respect to theoretical (geographical and knitted networks) as well as real-world networks (urban and word association networks), yielding interesting results and insights in both cases.

Definition of Distribution Network Tariffs Considering Distribution Generation and Demand Response

DEFF Research Database (Denmark)

Soares, Tiago; Faria, Pedro; Vale, Zita

2014-01-01

The use of distribution networks in the current scenario of high penetration of Distributed Generation (DG) is a problem of great importance. In the competitive environment of electricity markets and smart grids, Demand Response (DR) is also gaining notable impact with several benefits for the wh......The use of distribution networks in the current scenario of high penetration of Distributed Generation (DG) is a problem of great importance. In the competitive environment of electricity markets and smart grids, Demand Response (DR) is also gaining notable impact with several benefits...... the determination of topological distribution factors, and consequent application of the MW-mile method. The application of the proposed tariffs definition methodology is illustrated in a distribution network with 33 buses, 66 DG units, and 32 consumers with DR capacity...

Response of pressurized water reactor (PWR) to network power generation demands

International Nuclear Information System (INIS)

Schreiner, L.A.

1991-01-01

The flexibility of the PWR type reactor in terms of response to the variations of the network power demands, is demonstrated. The factors that affect the transitory flexibility and some design prospects that allow the reactor fits the requirements of the network power demands, are also discussed. (M.J.A.)

Role of architecture in the elastic response of semiflexible polymer and fiber networks

Science.gov (United States)

Heussinger, Claus; Frey, Erwin

2007-01-01

We study the elasticity of cross-linked networks of thermally fluctuating stiff polymers. As compared to their purely mechanical counterparts, it is shown that these thermal networks have a qualitatively different elastic response. By accounting for the entropic origin of the single-polymer elasticity, the networks acquire a strong susceptibility to polydispersity and structural randomness that is completely absent in athermal models. In extensive numerical studies we systematically vary the architecture of the networks and identify a wealth of phenomena that clearly show the strong dependence of the emergent macroscopic moduli on the underlying mesoscopic network structure. In particular, we highlight the importance of the polymer length, which to a large extent controls the elastic response of the network, surprisingly, even in parameter regions where it does not enter the macroscopic moduli explicitly. Understanding these subtle effects is only possible by going beyond the conventional approach that considers the response of typical polymer segments only. Instead, we propose to describe the elasticity in terms of a typical polymer filament and the spatial distribution of cross-links along its backbone. We provide theoretical scaling arguments to relate the observed macroscopic elasticity to the physical mechanisms on the microscopic and mesoscopic scales.

Genetic dissection of acute ethanol responsive gene networks in prefrontal cortex: functional and mechanistic implications.

Directory of Open Access Journals (Sweden)

Aaron R Wolen

Full Text Available Individual differences in initial sensitivity to ethanol are strongly related to the heritable risk of alcoholism in humans. To elucidate key molecular networks that modulate ethanol sensitivity we performed the first systems genetics analysis of ethanol-responsive gene expression in brain regions of the mesocorticolimbic reward circuit (prefrontal cortex, nucleus accumbens, and ventral midbrain across a highly diverse family of 27 isogenic mouse strains (BXD panel before and after treatment with ethanol.Acute ethanol altered the expression of ~2,750 genes in one or more regions and 400 transcripts were jointly modulated in all three. Ethanol-responsive gene networks were extracted with a powerful graph theoretical method that efficiently summarized ethanol's effects. These networks correlated with acute behavioral responses to ethanol and other drugs of abuse. As predicted, networks were heavily populated by genes controlling synaptic transmission and neuroplasticity. Several of the most densely interconnected network hubs, including Kcnma1 and Gsk3β, are known to influence behavioral or physiological responses to ethanol, validating our overall approach. Other major hub genes like Grm3, Pten and Nrg3 represent novel targets of ethanol effects. Networks were under strong genetic control by variants that we mapped to a small number of chromosomal loci. Using a novel combination of genetic, bioinformatic and network-based approaches, we identified high priority cis-regulatory candidate genes, including Scn1b, Gria1, Sncb and Nell2.The ethanol-responsive gene networks identified here represent a previously uncharacterized intermediate phenotype between DNA variation and ethanol sensitivity in mice. Networks involved in synaptic transmission were strongly regulated by ethanol and could contribute to behavioral plasticity seen with chronic ethanol. Our novel finding that hub genes and a small number of loci exert major influence over the ethanol

Identifying partial topology of complex dynamical networks via a pinning mechanism

Science.gov (United States)

Zhu, Shuaibing; Zhou, Jin; Lu, Jun-an

2018-04-01

In this paper, we study the problem of identifying the partial topology of complex dynamical networks via a pinning mechanism. By using the network synchronization theory and the adaptive feedback controlling method, we propose a method which can greatly reduce the number of nodes and observers in the response network. Particularly, this method can also identify the whole topology of complex networks. A theorem is established rigorously, from which some corollaries are also derived in order to make our method more cost-effective. Several numerical examples are provided to verify the effectiveness of the proposed method. In the simulation, an approach is also given to avoid possible identification failure caused by inner synchronization of the drive network.

Network of siren, public address and display system to preparedness and response for nuclear emergencies

International Nuclear Information System (INIS)

Joshi, G.H.; Padmanabhan, N.; Raman, N.; Pradeepkumar, K.S.; Sharma, D.N.; Abani, M.C.

2003-01-01

For an effective emergency response and implementation of counter measures, communication during a nuclear emergency is a very important aspect. The declaration of a nuclear emergency must be immediately conveyed to all those working in the plant and around the nuclear site. Besides this, the nature of emergency also needs to be conveyed unambiguously along with corresponding counter measures, such as stay in, evacuation or all clear signal for the relevant plants. This requirement has necessitated the need for a networked signaling system. Based on this requirement, a microcontroller based signaling and a telephone/wireless based communication and display system has been designed at Bhabha Atomic Research Centre. It is proposed to be used as a part of emergency preparedness and response programme at the nuclear facility sites. As per the design made for Bhabha Atomic Research Centre, Trombay site, each plant or area in the site is identified by a unique identification code. The main Site Emergency Control Centre/Emergency Response Centre at Mod. Labs. selectively calls the various plants and declares the nature of emergency to be followed In that plant/area through different siren signals along with display and announcement of instructions. This paper describes the details of the system that is designed for Bhabha Atomic Research Centre, Trombay site and proposed for other nuclear power plant sites. (author)

Enhancing the effects of social network site marketing campaigns: if you want consumers to like you, ask them about themselves

NARCIS (Netherlands)

van Noort, G.; Antheunis, M.L.; Verlegh, P.W.J.

2014-01-01

This study assesses the consequences of consumers’ self-disclosing of identification information in interactive advertising campaigns on social network sites (SNSs), for brand, product and campaign responses. Building on social response and brand relationship theory, these effects are predicted and

Energy Efficient Distributed Fault Identification Algorithm in Wireless Sensor Networks

Directory of Open Access Journals (Sweden)

Meenakshi Panda

2014-01-01

Full Text Available A distributed fault identification algorithm is proposed here to find both hard and soft faulty sensor nodes present in wireless sensor networks. The algorithm is distributed, self-detectable, and can detect the most common byzantine faults such as stuck at zero, stuck at one, and random data. In the proposed approach, each sensor node gathered the observed data from the neighbors and computed the mean to check whether faulty sensor node is present or not. If a node found the presence of faulty sensor node, then compares observed data with the data of the neighbors and predict probable fault status. The final fault status is determined by diffusing the fault information from the neighbors. The accuracy and completeness of the algorithm are verified with the help of statistical model of the sensors data. The performance is evaluated in terms of detection accuracy, false alarm rate, detection latency and message complexity.

Real-time identification of vehicle motion-modes using neural networks

Science.gov (United States)

Wang, Lifu; Zhang, Nong; Du, Haiping

2015-01-01

A four-wheel ground vehicle has three body-dominated motion-modes, that is, bounce, roll, and pitch motion-modes. Real-time identification of these motion-modes can make vehicle suspensions, in particular, active suspensions, target on the dominant motion-mode and apply appropriate control strategies to improve its performance with less power consumption. Recently, a motion-mode energy method (MEM) was developed to identify the vehicle body motion-modes. However, this method requires the measurement of full vehicle states and road inputs, which are not always available in practice. This paper proposes an alternative approach to identify vehicle primary motion-modes with acceptable accuracy by employing neural networks (NNs). The effectiveness of the trained NNs is verified on a 10-DOF full-car model under various types of excitation inputs. The results confirm that the proposed method is effective in determining vehicle primary motion-modes with comparable accuracy to the MEM method. Experimental data is further used to validate the proposed method.

BP Neural Network Could Help Improve Pre-miRNA Identification in Various Species

Directory of Open Access Journals (Sweden)

Limin Jiang

2016-01-01

Full Text Available MicroRNAs (miRNAs are a set of short (21–24 nt noncoding RNAs that play significant regulatory roles in cells. In the past few years, research on miRNA-related problems has become a hot field of bioinformatics because of miRNAs’ essential biological function. miRNA-related bioinformatics analysis is beneficial in several aspects, including the functions of miRNAs and other genes, the regulatory network between miRNAs and their target mRNAs, and even biological evolution. Distinguishing miRNA precursors from other hairpin-like sequences is important and is an essential procedure in detecting novel microRNAs. In this study, we employed backpropagation (BP neural network together with 98-dimensional novel features for microRNA precursor identification. Results show that the precision and recall of our method are 95.53% and 96.67%, respectively. Results further demonstrate that the total prediction accuracy of our method is nearly 13.17% greater than the state-of-the-art microRNA precursor prediction software tools.

GPS on Every Roof, GPS Sensor Network for Post-Seismic Building-Wise Damage Identification

Directory of Open Access Journals (Sweden)

Kenji Oguni

2013-12-01

Full Text Available Development of wireless sensor network equipped with GPS for post-seismic building-wise damage identification is presented in this paper. This system is called GPS on Every Roof. Sensor node equipped with GPS antenna and receiver is installed on the top of the roof of each and every building. The position of this sensor node is measured before and after earthquake. The final goal of this system is to i identify the displacement of the roof of each house and ii collect the information of displacement of the roof of the houses through wireless communication. Superposing this information on GIS, building-wise damage distribution due to earthquake can be obtained. The system overview, hardware and some of the key components of the system such as on-board GPS relative positioning algorithm to achieve the accuracy in the order of several centimeters are described in detail. Also, the results from a field experiment using a wireless sensor network with 39 sensor nodes are presented.

DNA-based identification of invasive alien species in relation to Canadian federal policy and law, and the basis of rapid-response management.

Science.gov (United States)

Thomas, Vernon G; Hanner, Robert H; Borisenko, Alex V

2016-11-01

Managing invasive alien species in Canada requires reliable taxonomic identification as the basis of rapid-response management. This can be challenging, especially when organisms are small and lack morphological diagnostic features. DNA-based techniques, such as DNA barcoding, offer a reliable, rapid, and inexpensive toolkit for taxonomic identification of individual or bulk samples, forensic remains, and even environmental DNA. Well suited for this requirement, they could be more broadly deployed and incorporated into the operating policy and practices of Canadian federal departments and should be authorized under these agencies' articles of law. These include Fisheries and Oceans Canada, Canadian Food Inspection Agency, Transport Canada, Environment Canada, Parks Canada, and Health Canada. These efforts should be harmonized with the appropriate provisions of provincial jurisdictions, for example, the Ontario Invasive Species Act. This approach necessitates that a network of accredited, certified laboratories exists, and that updated DNA reference libraries are readily accessible. Harmonizing this approach is vital among Canadian federal agencies, and between the federal and provincial levels of government. Canadian policy and law must also be harmonized with that of the USA when detecting, and responding to, invasive species in contiguous lands and waters. Creating capacity in legislation for use of DNA-based identifications brings the authority to fund, train, deploy, and certify staff, and to refine further developments in this molecular technology.

Identification of the actual state and entity availability forecasting in power engineering using neural-network technologies

Science.gov (United States)

Protalinsky, O. M.; Shcherbatov, I. A.; Stepanov, P. V.

2017-11-01

A growing number of severe accidents in RF call for the need to develop a system that could prevent emergency situations. In a number of cases accident rate is stipulated by careless inspections and neglects in developing repair programs. Across the country rates of accidents are growing because of a so-called “human factor”. In this regard, there has become urgent the problem of identification of the actual state of technological facilities in power engineering using data on engineering processes running and applying artificial intelligence methods. The present work comprises four model states of manufacturing equipment of engineering companies: defect, failure, preliminary situation, accident. Defect evaluation is carried out using both data from SCADA and ASEPCR and qualitative information (verbal assessments of experts in subject matter, photo- and video materials of surveys processed using pattern recognition methods in order to satisfy the requirements). Early identification of defects makes possible to predict the failure of manufacturing equipment using mathematical techniques of artificial neural network. In its turn, this helps to calculate predicted characteristics of reliability of engineering facilities using methods of reliability theory. Calculation of the given parameters provides the real-time estimation of remaining service life of manufacturing equipment for the whole operation period. The neural networks model allows evaluating possibility of failure of a piece of equipment consistent with types of actual defects and their previous reasons. The article presents the grounds for a choice of training and testing samples for the developed neural network, evaluates the adequacy of the neural networks model, and shows how the model can be used to forecast equipment failure. There have been carried out simulating experiments using a computer and retrospective samples of actual values for power engineering companies. The efficiency of the developed

Identification of exploration strategies for electric power distribution network using simulated annealing; Identificao de estrategias de exploracao de redes de distribuicao de energia electrica utilizando simulated annealing

Energy Technology Data Exchange (ETDEWEB)

Pereira, Jorge; Saraiva, J. Tome; Leao, Maria Teresa Ponce de [Instituto de Engenharia de Sistemas e Computadores (INESC), Porto (Portugal). E-mail: jpereira@inescn.pt; jsaraiva@inescn.pt; mleao@inescn.pt

1999-07-01

This paper presents a model for identification of optimum strategies for electric power distribution networks, considering the aim of minimizing the active power losses. This objective can be attained by modifying the transformer connections or modification of the condenser groups on duty. By the other side, specifications of voltage ranges for each bar and current intensity limits for the branches are admitted, in order to obtain a more realistic the used model. The paper describes the the simulated annealing in order to surpass the mentioned difficulties. The application of the method to the problem resolution allows the identification solutions based on exact models. The application is illustrated with the results obtained by using a IEEE test network and a network based on real distribution with 645 bars.

Feedback Models for Collaboration and Trust in Crisis Response Networks

National Research Council Canada - National Science Library

Hudgens, Bryan J; Bordetsky, Alex

2008-01-01

.... Coordination within disaster response networks is difficult for several reasons, including the chaotic nature of the crisis, a need for the various organizations to balance shared goals (crisis amelioration...

A flood-based information flow analysis and network minimization method for gene regulatory networks.

Science.gov (United States)

Pavlogiannis, Andreas; Mozhayskiy, Vadim; Tagkopoulos, Ilias

2013-04-24

Biological networks tend to have high interconnectivity, complex topologies and multiple types of interactions. This renders difficult the identification of sub-networks that are involved in condition- specific responses. In addition, we generally lack scalable methods that can reveal the information flow in gene regulatory and biochemical pathways. Doing so will help us to identify key participants and paths under specific environmental and cellular context. This paper introduces the theory of network flooding, which aims to address the problem of network minimization and regulatory information flow in gene regulatory networks. Given a regulatory biological network, a set of source (input) nodes and optionally a set of sink (output) nodes, our task is to find (a) the minimal sub-network that encodes the regulatory program involving all input and output nodes and (b) the information flow from the source to the sink nodes of the network. Here, we describe a novel, scalable, network traversal algorithm and we assess its potential to achieve significant network size reduction in both synthetic and E. coli networks. Scalability and sensitivity analysis show that the proposed method scales well with the size of the network, and is robust to noise and missing data. The method of network flooding proves to be a useful, practical approach towards information flow analysis in gene regulatory networks. Further extension of the proposed theory has the potential to lead in a unifying framework for the simultaneous network minimization and information flow analysis across various "omics" levels.

Optimizing Virtual Network Functions Placement in Virtual Data Center Infrastructure Using Machine Learning

Science.gov (United States)

Bolodurina, I. P.; Parfenov, D. I.

2018-01-01

We have elaborated a neural network model of virtual network flow identification based on the statistical properties of flows circulating in the network of the data center and characteristics that describe the content of packets transmitted through network objects. This enabled us to establish the optimal set of attributes to identify virtual network functions. We have established an algorithm for optimizing the placement of virtual data functions using the data obtained in our research. Our approach uses a hybrid method of visualization using virtual machines and containers, which enables to reduce the infrastructure load and the response time in the network of the virtual data center. The algorithmic solution is based on neural networks, which enables to scale it at any number of the network function copies.

Filling the gap between disaster preparedness and response networks of urban emergency management: Following the 2013 Seoul Floods.

Science.gov (United States)

Song, Minsun; Jung, Kyujin

2015-01-01

To examine the gap between disaster preparedness and response networks following the 2013 Seoul Floods in which the rapid transmission of disaster information and resources was impeded by severe changes of interorganizational collaboration networks. This research uses the 2013 Seoul Emergency Management Survey data that were collected before and after the floods, and total 94 organizations involving in coping with the floods were analyzed in bootstrap independent-sample t-test and social network analysis through UCINET 6 and STATA 12. The findings show that despite the primary network form that is more hierarchical, horizontal collaboration has been relatively invigorated in actual response. Also, interorganizational collaboration networks for response operations seem to be more flexible grounded on improvisation to coping with unexpected victims and damages. Local organizations under urban emergency management are recommended to tightly build a strong commitment for joint response operations through full-size exercises at the metropolitan level before a catastrophic event. Also, interorganizational emergency management networks need to be restructured by reflecting the actual response networks to reduce collaboration risk during a disaster. This research presents a critical insight into inverse thinking of the view designing urban emergency management networks and provides original evidences for filling the gap between previously coordinated networks for disaster preparedness and practical response operations after a disaster.

Is a Responsive Default Mode Network Required for Successful Working Memory Task Performance?

Science.gov (United States)

Čeko, Marta; Gracely, John L; Fitzcharles, Mary-Ann; Seminowicz, David A; Schweinhardt, Petra; Bushnell, M Catherine

2015-08-19

In studies of cognitive processing using tasks with externally directed attention, regions showing increased (external-task-positive) and decreased or "negative" [default-mode network (DMN)] fMRI responses during task performance are dynamically responsive to increasing task difficulty. Responsiveness (modulation of fMRI signal by increasing load) has been linked directly to successful cognitive task performance in external-task-positive regions but not in DMN regions. To investigate whether a responsive DMN is required for successful cognitive performance, we compared healthy human subjects (n = 23) with individuals shown to have decreased DMN engagement (chronic pain patients, n = 28). Subjects performed a multilevel working-memory task (N-back) during fMRI. If a responsive DMN is required for successful performance, patients having reduced DMN responsiveness should show worsened performance; if performance is not reduced, their brains should show compensatory activation in external-task-positive regions or elsewhere. All subjects showed decreased accuracy and increased reaction times with increasing task level, with no significant group differences on either measure at any level. Patients had significantly reduced negative fMRI response (deactivation) of DMN regions (posterior cingulate/precuneus, medial prefrontal cortex). Controls showed expected modulation of DMN deactivation with increasing task difficulty. Patients showed significantly reduced modulation of DMN deactivation by task difficulty, despite their successful task performance. We found no evidence of compensatory neural recruitment in external-task-positive regions or elsewhere. Individual responsiveness of the external-task-positive ventrolateral prefrontal cortex, but not of DMN regions, correlated with task accuracy. These findings suggest that a responsive DMN may not be required for successful cognitive performance; a responsive external-task-positive network may be sufficient. We studied the

Photo-responsive liquid crystalline epoxy networks with exchangeable disulfide bonds

Energy Technology Data Exchange (ETDEWEB)

Li, Yuzhan [Washington State Univ., Pullman, WA (United States); Zhang, Yuehong [Washington State Univ., Pullman, WA (United States); Rios, Orlando [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Keum, Jong K. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Kessler, Michael R. [Washington State Univ., Pullman, WA (United States); North Dakota State Univ., Fargo, ND (United States)

2017-07-27

The increasing demand for intelligent materials has driven the development of polymers with a variety of functionalities. However, combining multiple functionalities within one polymer is still challenging because of the difficulties encountered in coordinating different functional building blocks during fabrication. In this work, we demonstrate the fabrication of a multifunctional liquid crystalline epoxy network (LCEN) using the combination of thermotropic liquid crystals, photo-responsive azobenzene molecules, and exchangeable disulfide bonds. In addition to shape memory behavior enabled by the reversible liquid crystalline phase transition and photo-induced bending behavior resulting from the photo-responsive azobenzene molecules, the introduction of dynamic disulfide bonds into the LCEN resulted in a structurally dynamic network, allowing the reshaping, repairing, and recycling of the material.

Application of artificial neural networks for response surface modelling in HPLC method development

Directory of Open Access Journals (Sweden)

Mohamed A. Korany

2012-01-01

Full Text Available This paper discusses the usefulness of artificial neural networks (ANNs for response surface modelling in HPLC method development. In this study, the combined effect of pH and mobile phase composition on the reversed-phase liquid chromatographic behaviour of a mixture of salbutamol (SAL and guaiphenesin (GUA, combination I, and a mixture of ascorbic acid (ASC, paracetamol (PAR and guaiphenesin (GUA, combination II, was investigated. The results were compared with those produced using multiple regression (REG analysis. To examine the respective predictive power of the regression model and the neural network model, experimental and predicted response factor values, mean of squares error (MSE, average error percentage (Er%, and coefficients of correlation (r were compared. It was clear that the best networks were able to predict the experimental responses more accurately than the multiple regression analysis.

Identification of Lactic Acid Bacteria and Propionic Acid Bacteria using FTIR Spectroscopy and Artificial Neural Networks

Directory of Open Access Journals (Sweden)

Beata Nalepa

2012-01-01

Full Text Available In the present study, lactic acid bacteria and propionic acid bacteria have been identified at the genus level with the use of artificial neural networks (ANNs and Fourier transform infrared spectroscopy (FTIR. Bacterial strains of the genera Lactobacillus, Lactococcus, Leuconostoc, Streptococcus and Propionibacterium were analyzed since they deliver health benefits and are routinely used in the food processing industry. The correctness of bacterial identification by ANNs and FTIR was evaluated at two stages. At first stage, ANNs were tested based on the spectra of 66 reference bacterial strains. At second stage, the evaluation involved 286 spectra of bacterial strains isolated from food products, deposited in our laboratory collection, and identified by genus-specific PCR. ANNs were developed based on the spectra and their first derivatives. The most satisfactory results were reported for the probabilistic neural network, which was built using a combination of W5W4W3 spectral ranges. This network correctly identified the genus of 95 % of the lactic acid bacteria and propionic acid bacteria strains analyzed.

Transcriptional profiling uncovers a network of cholesterol-responsive atherosclerosis target genes.

Directory of Open Access Journals (Sweden)

Josefin Skogsberg

2008-03-01

Full Text Available Despite the well-documented effects of plasma lipid lowering regimes halting atherosclerosis lesion development and reducing morbidity and mortality of coronary artery disease and stroke, the transcriptional response in the atherosclerotic lesion mediating these beneficial effects has not yet been carefully investigated. We performed transcriptional profiling at 10-week intervals in atherosclerosis-prone mice with human-like hypercholesterolemia and a genetic switch to lower plasma lipoproteins (Ldlr(-/-Apo(100/100Mttp(flox/flox Mx1-Cre. Atherosclerotic lesions progressed slowly at first, then expanded rapidly, and plateaued after advanced lesions formed. Analysis of lesion expression profiles indicated that accumulation of lipid-poor macrophages reached a point that led to the rapid expansion phase with accelerated foam-cell formation and inflammation, an interpretation supported by lesion histology. Genetic lowering of plasma cholesterol (e.g., lipoproteins at this point all together prevented the formation of advanced plaques and parallel transcriptional profiling of the atherosclerotic arterial wall identified 37 cholesterol-responsive genes mediating this effect. Validation by siRNA-inhibition in macrophages incubated with acetylated-LDL revealed a network of eight cholesterol-responsive atherosclerosis genes regulating cholesterol-ester accumulation. Taken together, we have identified a network of atherosclerosis genes that in response to plasma cholesterol-lowering prevents the formation of advanced plaques. This network should be of interest for the development of novel atherosclerosis therapies.

Dynamical Response of Networks Under External Perturbations: Exact Results

Science.gov (United States)

Chinellato, David D.; Epstein, Irving R.; Braha, Dan; Bar-Yam, Yaneer; de Aguiar, Marcus A. M.

2015-04-01

We give exact statistical distributions for the dynamic response of influence networks subjected to external perturbations. We consider networks whose nodes have two internal states labeled 0 and 1. We let nodes be frozen in state 0, in state 1, and the remaining nodes change by adopting the state of a connected node with a fixed probability per time step. The frozen nodes can be interpreted as external perturbations to the subnetwork of free nodes. Analytically extending and to be smaller than 1 enables modeling the case of weak coupling. We solve the dynamical equations exactly for fully connected networks, obtaining the equilibrium distribution, transition probabilities between any two states and the characteristic time to equilibration. Our exact results are excellent approximations for other topologies, including random, regular lattice, scale-free and small world networks, when the numbers of fixed nodes are adjusted to take account of the effect of topology on coupling to the environment. This model can describe a variety of complex systems, from magnetic spins to social networks to population genetics, and was recently applied as a framework for early warning signals for real-world self-organized economic market crises.

Identification and quantitation of signal molecule-dependent protein phosphorylation

KAUST Repository

Groen, Arnoud J.

2013-09-03

Phosphoproteomics is a fast-growing field that aims at characterizing phosphorylated proteins in a cell or a tissue at a given time. Phosphorylation of proteins is an important regulatory mechanism in many cellular processes. Gel-free phosphoproteome technique involving enrichment of phosphopeptide coupled with mass spectrometry has proven to be invaluable to detect and characterize phosphorylated proteins. In this chapter, a gel-free quantitative approach involving 15N metabolic labelling in combination with phosphopeptide enrichment by titanium dioxide (TiO2) and their identification by MS is described. This workflow can be used to gain insights into the role of signalling molecules such as cyclic nucleotides on regulatory networks through the identification and quantification of responsive phospho(proteins). © Springer Science+Business Media New York 2013.

Complex Projective Synchronization in Drive-Response Stochastic Complex Networks by Impulsive Pinning Control

Directory of Open Access Journals (Sweden)

Xuefei Wu

2014-01-01

Full Text Available The complex projective synchronization in drive-response stochastic coupled networks with complex-variable systems is considered. The impulsive pinning control scheme is adopted to achieve complex projective synchronization and several simple and practical sufficient conditions are obtained in a general drive-response network. In addition, the adaptive feedback algorithms are proposed to adjust the control strength. Several numerical simulations are provided to show the effectiveness and feasibility of the proposed methods.

Transcriptional Regulatory Network Analysis of MYB Transcription Factor Family Genes in Rice

Directory of Open Access Journals (Sweden)

Shuchi eSmita

2015-12-01

Full Text Available MYB transcription factor (TF is one of the largest TF families and regulates defense responses to various stresses, hormone signaling as well as many metabolic and developmental processes in plants. Understanding these regulatory hierarchies of gene expression networks in response to developmental and environmental cues is a major challenge due to the complex interactions between the genetic elements. Correlation analyses are useful to unravel co-regulated gene pairs governing biological process as well as identification of new candidate hub genes in response to these complex processes. High throughput expression profiling data are highly useful for construction of co-expression networks. In the present study, we utilized transcriptome data for comprehensive regulatory network studies of MYB TFs by top down and guide gene approaches. More than 50% of OsMYBs were strongly correlated under fifty experimental conditions with 51 hub genes via top down approach. Further, clusters were identified using Markov Clustering (MCL. To maximize the clustering performance, parameter evaluation of the MCL inflation score (I was performed in terms of enriched GO categories by measuring F-score. Comparison of co-expressed cluster and clads analyzed from phylogenetic analysis signifies their evolutionarily conserved co-regulatory role. We utilized compendium of known interaction and biological role with Gene Ontology enrichment analysis to hypothesize function of coexpressed OsMYBs. In the other part, the transcriptional regulatory network analysis by guide gene approach revealed 40 putative targets of 26 OsMYB TF hubs with high correlation value utilizing 815 microarray data. The putative targets with MYB-binding cis-elements enrichment in their promoter region, functional co-occurrence as well as nuclear localization supports our finding. Specially, enrichment of MYB binding regions involved in drought-inducibility implying their regulatory role in drought

Fuzzy Wavelet Neural Network Using a Correntropy Criterion for Nonlinear System Identification

Directory of Open Access Journals (Sweden)

Leandro L. S. Linhares

2015-01-01

Full Text Available Recent researches have demonstrated that the Fuzzy Wavelet Neural Networks (FWNNs are an efficient tool to identify nonlinear systems. In these structures, features related to fuzzy logic, wavelet functions, and neural networks are combined in an architecture similar to the Adaptive Neurofuzzy Inference Systems (ANFIS. In practical applications, the experimental data set used in the identification task often contains unknown noise and outliers, which decrease the FWNN model reliability. In order to reduce the negative effects of these erroneous measurements, this work proposes the direct use of a similarity measure based on information theory in the FWNN learning procedure. The Mean Squared Error (MSE cost function is replaced by the Maximum Correntropy Criterion (MCC in the traditional error backpropagation (BP algorithm. The input-output maps of a real nonlinear system studied in this work are identified from an experimental data set corrupted by different outliers rates and additive white Gaussian noise. The results demonstrate the advantages of the proposed cost function using the MCC as compared to the MSE. This work also investigates the influence of the kernel size on the performance of the MCC in the BP algorithm, since it is the only free parameter of correntropy.

Nonlinear dynamic systems identification using recurrent interval type-2 TSK fuzzy neural network - A novel structure.

Science.gov (United States)

El-Nagar, Ahmad M

2018-01-01

In this study, a novel structure of a recurrent interval type-2 Takagi-Sugeno-Kang (TSK) fuzzy neural network (FNN) is introduced for nonlinear dynamic and time-varying systems identification. It combines the type-2 fuzzy sets (T2FSs) and a recurrent FNN to avoid the data uncertainties. The fuzzy firing strengths in the proposed structure are returned to the network input as internal variables. The interval type-2 fuzzy sets (IT2FSs) is used to describe the antecedent part for each rule while the consequent part is a TSK-type, which is a linear function of the internal variables and the external inputs with interval weights. All the type-2 fuzzy rules for the proposed RIT2TSKFNN are learned on-line based on structure and parameter learning, which are performed using the type-2 fuzzy clustering. The antecedent and consequent parameters of the proposed RIT2TSKFNN are updated based on the Lyapunov function to achieve network stability. The obtained results indicate that our proposed network has a small root mean square error (RMSE) and a small integral of square error (ISE) with a small number of rules and a small computation time compared with other type-2 FNNs. Copyright © 2017 ISA. Published by Elsevier Ltd. All rights reserved.

Hsf and Hsp gene families in Populus: genome-wide identification, organization and correlated expression during development and in stress responses.

Science.gov (United States)

Zhang, Jin; Liu, Bobin; Li, Jianbo; Zhang, Li; Wang, Yan; Zheng, Huanquan; Lu, Mengzhu; Chen, Jun

2015-03-14

Heat shock proteins (Hsps) are molecular chaperones that are involved in many normal cellular processes and stress responses, and heat shock factors (Hsfs) are the transcriptional activators of Hsps. Hsfs and Hsps are widely coordinated in various biological processes. Although the roles of Hsfs and Hsps in stress responses have been well characterized in Arabidopsis, their roles in perennial woody species undergoing various environmental stresses remain unclear. Here, a comprehensive identification and analysis of Hsf and Hsp families in poplars is presented. In Populus trichocarpa, we identified 42 paralogous pairs, 66.7% resulting from a whole genome duplication. The gene structure and motif composition are relatively conserved in each subfamily. Microarray and quantitative real-time RT-PCR analyses showed that most of the Populus Hsf and Hsp genes are differentially expressed upon exposure to various stresses. A coexpression network between Populus Hsf and Hsp genes was generated based on their expression. Coordinated relationships were validated by transient overexpression and subsequent qPCR analyses. The comprehensive analysis indicates that different sets of PtHsps are downstream of particular PtHsfs and provides a basis for functional studies aimed at revealing the roles of these families in poplar development and stress responses.

An efficient Neuro-Fuzzy approach to nuclear power plant transient identification

Energy Technology Data Exchange (ETDEWEB)

Gomes da Costa, Rafael [Instituto de Engenharia Nuclear - CNEN, Programa de Pos-Graduacao em Ciencia e Tecnologia Nucleares, Via Cinco, s/no, Cidade Universitaria, Rua Helio de Almeida, 75, Postal Box 68550, Zip Code 21941-906 Rio de Janeiro (Brazil); Abreu Mol, Antonio Carlos de, E-mail: mol@ien.gov.br [Instituto de Engenharia Nuclear - CNEN, Programa de Pos-Graduacao em Ciencia e Tecnologia Nucleares, Via Cinco, s/no, Cidade Universitaria, Rua Helio de Almeida, 75, Postal Box 68550, Zip Code 21941-906 Rio de Janeiro (Brazil); Instituto Nacional de C and T de Reatores Nucleares Inovadores (Brazil); Carvalho, Paulo Victor R. de, E-mail: paulov@ien.gov.br [Instituto de Engenharia Nuclear - CNEN, Programa de Pos-Graduacao em Ciencia e Tecnologia Nucleares, Via Cinco, s/no, Cidade Universitaria, Rua Helio de Almeida, 75, Postal Box 68550, Zip Code 21941-906 Rio de Janeiro (Brazil); Lapa, Celso Marcelo Franklin, E-mail: lapa@ien.gov.br [Instituto de Engenharia Nuclear - CNEN, Programa de Pos-Graduacao em Ciencia e Tecnologia Nucleares, Via Cinco, s/no, Cidade Universitaria, Rua Helio de Almeida, 75, Postal Box 68550, Zip Code 21941-906 Rio de Janeiro (Brazil); Instituto Nacional de C and T de Reatores Nucleares Inovadores (Brazil)

2011-06-15

Highlights: > We investigate a Neuro-Fuzzy modeling tool use for able transient identification. > The prelusive transient type identification is done by an artificial neural network. > After, the fuzzy-logic system analyzes the results emitting reliability degree of it. > The research support was made in a PWR simulator at the Brazilian Nuclear Engineering Institute. > The results show the potential to help operators' decisions in a nuclear power plant. - Abstract: Transient identification in nuclear power plants (NPP) is often a computational very hard task and may involve a great amount of human cognition. The early identification of unexpected departures from steady state behavior is an essential step for the operation, control and accident management in NPPs. The bases for the transient identification relay on the evidence that different system faults and anomalies lead to different pattern evolution in the involved process variables. During an abnormal event, the operator must monitor a great amount of information from the instruments that represents a specific type of event. Recently, several works have been developed for transient identification. These works frequently present a non reliable response, using the 'don't know' as the system output. In this work, we investigate the possibility of using a Neuro-Fuzzy modeling tool for efficient transient identification, aiming to helping the operator crew to take decisions relative to the procedure to be followed in situations of accidents/transients at NPPs. The proposed system uses artificial neural networks (ANN) as first level transient diagnostic. After the ANN has done the preliminary transient type identification, a fuzzy-logic system analyzes the results emitting reliability degree of it. A validation of this identification system was made at the three loops Pressurized Water Reactor (PWR) simulator of the Human-System Interface Laboratory (LABIHS) of the Nuclear Engineering Institute

An efficient Neuro-Fuzzy approach to nuclear power plant transient identification

International Nuclear Information System (INIS)

Gomes da Costa, Rafael; Abreu Mol, Antonio Carlos de; Carvalho, Paulo Victor R. de; Lapa, Celso Marcelo Franklin

2011-01-01

Highlights: → We investigate a Neuro-Fuzzy modeling tool use for able transient identification. → The prelusive transient type identification is done by an artificial neural network. → After, the fuzzy-logic system analyzes the results emitting reliability degree of it. → The research support was made in a PWR simulator at the Brazilian Nuclear Engineering Institute. → The results show the potential to help operators' decisions in a nuclear power plant. - Abstract: Transient identification in nuclear power plants (NPP) is often a computational very hard task and may involve a great amount of human cognition. The early identification of unexpected departures from steady state behavior is an essential step for the operation, control and accident management in NPPs. The bases for the transient identification relay on the evidence that different system faults and anomalies lead to different pattern evolution in the involved process variables. During an abnormal event, the operator must monitor a great amount of information from the instruments that represents a specific type of event. Recently, several works have been developed for transient identification. These works frequently present a non reliable response, using the 'don't know' as the system output. In this work, we investigate the possibility of using a Neuro-Fuzzy modeling tool for efficient transient identification, aiming to helping the operator crew to take decisions relative to the procedure to be followed in situations of accidents/transients at NPPs. The proposed system uses artificial neural networks (ANN) as first level transient diagnostic. After the ANN has done the preliminary transient type identification, a fuzzy-logic system analyzes the results emitting reliability degree of it. A validation of this identification system was made at the three loops Pressurized Water Reactor (PWR) simulator of the Human-System Interface Laboratory (LABIHS) of the Nuclear Engineering Institute (IEN

The National Response System: The Need to Leverage Networks and Knowledge

National Research Council Canada - National Science Library

Compagnoni, Barry A

2006-01-01

.... When viewing our national response from the perspective of network theory and knowledge management, specific gaps are identified in doctrine, organizational composition and technological capability...

A cascade reaction network mimicking the basic functional steps of acquired immune response

Science.gov (United States)

Han, Da; Wu, Cuichen; You, Mingxu; Zhang, Tao; Wan, Shuo; Chen, Tao; Qiu, Liping; Zheng, Zheng; Liang, Hao; Tan, Weihong

2015-01-01

Biological systems use complex ‘information processing cores’ composed of molecular networks to coordinate their external environment and internal states. An example of this is the acquired, or adaptive, immune system (AIS), which is composed of both humoral and cell-mediated components. Here we report the step-by-step construction of a prototype mimic of the AIS which we call Adaptive Immune Response Simulator (AIRS). DNA and enzymes are used as simple artificial analogues of the components of the AIS to create a system which responds to specific molecular stimuli in vitro. We show that this network of reactions can function in a manner which is superficially similar to the most basic responses of the vertebrate acquired immune system, including reaction sequences that mimic both humoral and cellular responses. As such, AIRS provides guidelines for the design and engineering of artificial reaction networks and molecular devices. PMID:26391084

A cascade reaction network mimicking the basic functional steps of adaptive immune response.

Science.gov (United States)

Han, Da; Wu, Cuichen; You, Mingxu; Zhang, Tao; Wan, Shuo; Chen, Tao; Qiu, Liping; Zheng, Zheng; Liang, Hao; Tan, Weihong

2015-10-01

Biological systems use complex 'information-processing cores' composed of molecular networks to coordinate their external environment and internal states. An example of this is the acquired, or adaptive, immune system (AIS), which is composed of both humoral and cell-mediated components. Here we report the step-by-step construction of a prototype mimic of the AIS that we call an adaptive immune response simulator (AIRS). DNA and enzymes are used as simple artificial analogues of the components of the AIS to create a system that responds to specific molecular stimuli in vitro. We show that this network of reactions can function in a manner that is superficially similar to the most basic responses of the vertebrate AIS, including reaction sequences that mimic both humoral and cellular responses. As such, AIRS provides guidelines for the design and engineering of artificial reaction networks and molecular devices.

A unified framework for unraveling the functional interaction structure of a biomolecular network based on stimulus-response experimental data.

Science.gov (United States)

Cho, Kwang-Hyun; Choo, Sang-Mok; Wellstead, Peter; Wolkenhauer, Olaf

2005-08-15

We propose a unified framework for the identification of functional interaction structures of biomolecular networks in a way that leads to a new experimental design procedure. In developing our approach, we have built upon previous work. Thus we begin by pointing out some of the restrictions associated with existing structure identification methods and point out how these restrictions may be eased. In particular, existing methods use specific forms of experimental algebraic equations with which to identify the functional interaction structure of a biomolecular network. In our work, we employ an extended form of these experimental algebraic equations which, while retaining their merits, also overcome some of their disadvantages. Experimental data are required in order to estimate the coefficients of the experimental algebraic equation set associated with the structure identification task. However, experimentalists are rarely provided with guidance on which parameters to perturb, and to what extent, to perturb them. When a model of network dynamics is required then there is also the vexed question of sample rate and sample time selection to be resolved. Supplying some answers to these questions is the main motivation of this paper. The approach is based on stationary and/or temporal data obtained from parameter perturbations, and unifies the previous approaches of Kholodenko et al. (PNAS 99 (2002) 12841-12846) and Sontag et al. (Bioinformatics 20 (2004) 1877-1886). By way of demonstration, we apply our unified approach to a network model which cannot be properly identified by existing methods. Finally, we propose an experiment design methodology, which is not limited by the amount of parameter perturbations, and illustrate its use with an in numero example.

Discriminating response groups in metabolic and regulatory pathway networks.

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Van Hemert, John L; Dickerson, Julie A

2012-04-01

Analysis of omics experiments generates lists of entities (genes, metabolites, etc.) selected based on specific behavior, such as changes in response to stress or other signals. Functional interpretation of these lists often uses category enrichment tests using functional annotations like Gene Ontology terms and pathway membership. This approach does not consider the connected structure of biochemical pathways or the causal directionality of events. The Omics Response Group (ORG) method, described in this work, interprets omics lists in the context of metabolic pathway and regulatory networks using a statistical model for flow within the networks. Statistical results for all response groups are visualized in a novel Pathway Flow plot. The statistical tests are based on the Erlang distribution model under the assumption of independent and identically Exponential-distributed random walk flows through pathways. As a proof of concept, we applied our method to an Escherichia coli transcriptomics dataset where we confirmed common knowledge of the E.coli transcriptional response to Lipid A deprivation. The main response is related to osmotic stress, and we were also able to detect novel responses that are supported by the literature. We also applied our method to an Arabidopsis thaliana expression dataset from an abscisic acid study. In both cases, conventional pathway enrichment tests detected nothing, while our approach discovered biological processes beyond the original studies. We created a prototype for an interactive ORG web tool at http://ecoserver.vrac.iastate.edu/pathwayflow (source code is available from https://subversion.vrac.iastate.edu/Subversion/jlv/public/jlv/pathwayflow). The prototype is described along with additional figures and tables in Supplementary Material. julied@iastate.edu Supplementary data are available at Bioinformatics online.

Core reactivity estimation in space reactors using recurrent dynamic networks

Science.gov (United States)

Parlos, Alexander G.; Tsai, Wei K.

1991-01-01

A recurrent multilayer perceptron network topology is used in the identification of nonlinear dynamic systems from only the input/output measurements. The identification is performed in the discrete time domain, with the learning algorithm being a modified form of the back propagation (BP) rule. The recurrent dynamic network (RDN) developed is applied for the total core reactivity prediction of a spacecraft reactor from only neutronic power level measurements. Results indicate that the RDN can reproduce the nonlinear response of the reactor while keeping the number of nodes roughly equal to the relative order of the system. As accuracy requirements are increased, the number of required nodes also increases, however, the order of the RDN necessary to obtain such results is still in the same order of magnitude as the order of the mathematical model of the system. It is believed that use of the recurrent MLP structure with a variety of different learning algorithms may prove useful in utilizing artificial neural networks for recognition, classification, and prediction of dynamic systems.

Tooth labeling in cone-beam CT using deep convolutional neural network for forensic identification

Science.gov (United States)

Miki, Yuma; Muramatsu, Chisako; Hayashi, Tatsuro; Zhou, Xiangrong; Hara, Takeshi; Katsumata, Akitoshi; Fujita, Hiroshi

2017-03-01

In large disasters, dental record plays an important role in forensic identification. However, filing dental charts for corpses is not an easy task for general dentists. Moreover, it is laborious and time-consuming work in cases of large scale disasters. We have been investigating a tooth labeling method on dental cone-beam CT images for the purpose of automatic filing of dental charts. In our method, individual tooth in CT images are detected and classified into seven tooth types using deep convolutional neural network. We employed the fully convolutional network using AlexNet architecture for detecting each tooth and applied our previous method using regular AlexNet for classifying the detected teeth into 7 tooth types. From 52 CT volumes obtained by two imaging systems, five images each were randomly selected as test data, and the remaining 42 cases were used as training data. The result showed the tooth detection accuracy of 77.4% with the average false detection of 5.8 per image. The result indicates the potential utility of the proposed method for automatic recording of dental information.

Is a Responsive Default Mode Network Required for Successful Working Memory Task Performance?

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Čeko, Marta; Gracely, John L.; Fitzcharles, Mary-Ann; Seminowicz, David A.; Schweinhardt, Petra

2015-01-01

In studies of cognitive processing using tasks with externally directed attention, regions showing increased (external-task-positive) and decreased or “negative” [default-mode network (DMN)] fMRI responses during task performance are dynamically responsive to increasing task difficulty. Responsiveness (modulation of fMRI signal by increasing load) has been linked directly to successful cognitive task performance in external-task-positive regions but not in DMN regions. To investigate whether a responsive DMN is required for successful cognitive performance, we compared healthy human subjects (n = 23) with individuals shown to have decreased DMN engagement (chronic pain patients, n = 28). Subjects performed a multilevel working-memory task (N-back) during fMRI. If a responsive DMN is required for successful performance, patients having reduced DMN responsiveness should show worsened performance; if performance is not reduced, their brains should show compensatory activation in external-task-positive regions or elsewhere. All subjects showed decreased accuracy and increased reaction times with increasing task level, with no significant group differences on either measure at any level. Patients had significantly reduced negative fMRI response (deactivation) of DMN regions (posterior cingulate/precuneus, medial prefrontal cortex). Controls showed expected modulation of DMN deactivation with increasing task difficulty. Patients showed significantly reduced modulation of DMN deactivation by task difficulty, despite their successful task performance. We found no evidence of compensatory neural recruitment in external-task-positive regions or elsewhere. Individual responsiveness of the external-task-positive ventrolateral prefrontal cortex, but not of DMN regions, correlated with task accuracy. These findings suggest that a responsive DMN may not be required for successful cognitive performance; a responsive external-task-positive network may be sufficient

Dynamical Networks Characterization of Geomagnetic Substorms and Transient Response to the Solar Wind State.

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Chapman, S. C.; Dods, J.; Gjerloev, J. W.

2017-12-01

Observations of how the solar wind interacts with earth's magnetosphere, and its dynamical response, are increasingly becoming a data analytics challenge. Constellations of satellites observe the solar corona, the upstream solar wind and throughout earth's magnetosphere. These data are multipoint in space and extended in time, so in principle are ideal for study using dynamical networks to characterize the full time evolving spatial pattern. We focus here on analysis of data from the full set of 100+ auroral ground based magnetometer stations that have been collated by SuperMAG. Spatio-temporal patterns of correlation between the magnetometer time series can be used to form a dynamical network [1]. The properties of the network can then be captured by (time dependent) network parameters. This offers the possibility of characterizing detailed spatio-temporal pattern by a few parameters, so that many events can then be compared [2] with each other. Whilst networks are in widespread use in the data analytics of societal and commercial data, there are additional challenges in their application to physical timeseries. Determining whether two nodes (here, ground based magnetometer stations) are connected in a network (seeing the same dynamics) requires normalization w.r.t. the detailed sensitivities and dynamical responses of specific observing stations and seasonal conductivity variations and we have developed methods to achieve this dynamical normalization. The detailed properties of the network capture time dependent spatial correlation in the magnetometer responses and we will show how this can be used to infer a transient current system response to magnetospheric activity. [l] Dods et al, J. Geophys. Res 120, doi:10.1002/2015JA02 (2015). [2] Dods et al, J. Geophys. Res. 122, doi:10.1002/2016JA02 (2017).

Preliminary Results of Ocular Artefacts Identification in EEC Series by Neural Network

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M. Kofronova

1996-06-01

Full Text Available The human electroencephalogram (EEG, is record of the electrical activity of the brain and contains useful diagnostic information on a variety of neurological disorders. Normal EEG signal are usually registered from electrodes placed on the scalp, and are often very small in amplitude, of 20 µV. The EEG, like all biomedical signals, is very susceptible to a variety of large signal contamination or artefacts (signals of other than brain activity which reduce its clinical usefulness. For example, blinking or moving eyes produces large electrical potentials around the eyes called the electrooculogram (EOG. The EOG spreads across the scalp to contaminate the EEG, when it is referred to as an ocular artefact (OA. This paper includes method of identification portion of the EEG record where ocular artefact appears and classification its type by neural network.

Response to ``Comment on `Adaptive Q-S (lag, anticipated, and complete) time-varying synchronization and parameters identification of uncertain delayed neural networks''' [Chaos 17, 038101 (2007)

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Yu, Wenwu; Cao, Jinde

2007-09-01

Parameter identification of dynamical systems from time series has received increasing interest due to its wide applications in secure communication, pattern recognition, neural networks, and so on. Given the driving system, parameters can be estimated from the time series by using an adaptive control algorithm. Recently, it has been reported that for some stable systems, in which parameters are difficult to be identified [Li et al., Phys Lett. A 333, 269-270 (2004); Remark 5 in Yu and Cao, Physica A 375, 467-482 (2007); and Li et al., Chaos 17, 038101 (2007)], and in this paper, a brief discussion about whether parameters can be identified from time series is investigated. From some detailed analyses, the problem of why parameters of stable systems can be hardly estimated is discussed. Some interesting examples are drawn to verify the proposed analysis.

Organization of cis-acting regulatory elements in osmotic- and cold-stress-responsive promoters.

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Yamaguchi-Shinozaki, Kazuko; Shinozaki, Kazuo

2005-02-01

cis-Acting regulatory elements are important molecular switches involved in the transcriptional regulation of a dynamic network of gene activities controlling various biological processes, including abiotic stress responses, hormone responses and developmental processes. In particular, understanding regulatory gene networks in stress response cascades depends on successful functional analyses of cis-acting elements. The ever-improving accuracy of transcriptome expression profiling has led to the identification of various combinations of cis-acting elements in the promoter regions of stress-inducible genes involved in stress and hormone responses. Here we discuss major cis-acting elements, such as the ABA-responsive element (ABRE) and the dehydration-responsive element/C-repeat (DRE/CRT), that are a vital part of ABA-dependent and ABA-independent gene expression in osmotic and cold stress responses.

Synchronization of chaotic systems and identification of nonlinear systems by using recurrent hierarchical type-2 fuzzy neural networks.

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Mohammadzadeh, Ardashir; Ghaemi, Sehraneh

2015-09-01

This paper proposes a novel approach for training of proposed recurrent hierarchical interval type-2 fuzzy neural networks (RHT2FNN) based on the square-root cubature Kalman filters (SCKF). The SCKF algorithm is used to adjust the premise part of the type-2 FNN and the weights of defuzzification and the feedback weights. The recurrence property in the proposed network is the output feeding of each membership function to itself. The proposed RHT2FNN is employed in the sliding mode control scheme for the synchronization of chaotic systems. Unknown functions in the sliding mode control approach are estimated by RHT2FNN. Another application of the proposed RHT2FNN is the identification of dynamic nonlinear systems. The effectiveness of the proposed network and its learning algorithm is verified by several simulation examples. Furthermore, the universal approximation of RHT2FNNs is also shown. Copyright © 2015 ISA. Published by Elsevier Ltd. All rights reserved.

Identification of wheat varieties using matrix-assisted laserdesorption/ionisation time-of-flight mass spectrometry and anartificial neural network

DEFF Research Database (Denmark)

Bloch, Helle Aagaard; Kesmir, Can; Petersen, Marianne Kjerstine

1999-01-01

of this novelmethod with respect to various experimental parameters has been tested. The results can be summarised: (i)With this approach 97% of the wheat varieties can be classified correctly with a corresponding correlationcoefficient of 1.0, (ii) The method is fast since the time of extracting gliadins from flour......A novel tool for variety identification of wheat (Triticum aestivum L.) has been developed: an artificialneural network (ANN) is used to classify the gliadin fraction analysed by matrix-assisted laserdesorption/ionisation time-of-flight mass spectrometry (MALDI-TOFMS). The robustness...... by the identity of the operator making theanalysis. This study demonstrates that a combination of an ANN and MALDI-TOFMS analysis of thegliadin fraction provides a fast and reliable tool for the variety identification of wheat. Copyright 1999 JohnWiley & Sons, Ltd....

Dynamic network reconstruction from gene expression data applied to immune response during bacterial infection.

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Guthke, Reinhard; Möller, Ulrich; Hoffmann, Martin; Thies, Frank; Töpfer, Susanne

2005-04-15

The immune response to bacterial infection represents a complex network of dynamic gene and protein interactions. We present an optimized reverse engineering strategy aimed at a reconstruction of this kind of interaction networks. The proposed approach is based on both microarray data and available biological knowledge. The main kinetics of the immune response were identified by fuzzy clustering of gene expression profiles (time series). The number of clusters was optimized using various evaluation criteria. For each cluster a representative gene with a high fuzzy-membership was chosen in accordance with available physiological knowledge. Then hypothetical network structures were identified by seeking systems of ordinary differential equations, whose simulated kinetics could fit the gene expression profiles of the cluster-representative genes. For the construction of hypothetical network structures singular value decomposition (SVD) based methods and a newly introduced heuristic Network Generation Method here were compared. It turned out that the proposed novel method could find sparser networks and gave better fits to the experimental data. Reinhard.Guthke@hki-jena.de.

An expanding universe of circadian networks in higher plants.

Science.gov (United States)

Pruneda-Paz, Jose L; Kay, Steve A

2010-05-01

Extensive circadian clock networks regulate almost every biological process in plants. Clock-controlled physiological responses are coupled with daily oscillations in environmental conditions resulting in enhanced fitness and growth vigor. Identification of core clock components and their associated molecular interactions has established the basic network architecture of plant clocks, which consists of multiple interlocked feedback loops. A hierarchical structure of transcriptional feedback overlaid with regulated protein turnover sets the pace of the clock and ultimately drives all clock-controlled processes. Although originally described as linear entities, increasing evidence suggests that many signaling pathways can act as both inputs and outputs within the overall network. Future studies will determine the molecular mechanisms involved in these complex regulatory loops. 2010 Elsevier Ltd. All rights reserved.

Identification and profiling of conserved and novel microRNAs in Laodelphax striatellus in response to rice black-streaked dwarf virus (RBSDV infection

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Jun-Min Li

2015-03-01

Full Text Available MicroRNAs (miRNAs are small non-coding endogenous RNA molecules that play important roles in various biological processes. This study examined microRNA profiles of Laodelphax striatellus using the small RNA libraries derived from virus free (VF and rice black-streaked dwarf virus (RBSDV infected (RB insects. A total of 59 mature miRNAs (46 miRNA families were identified as conserved insect miRNAs in both VF and RB libraries. Among these conserved miRNAs, 24 were derived from the two arms of 12 miRNA precursors. Nine conserved L. striatellus miRNAs were up-regulated and 12 were down-regulated in response to RBSDV infection. In addition, a total of 20 potential novel miRNA candidates were predicted in the VF and RB libraries. The miRNA transcriptome profiles and the identification of L. striatellus miRNAs differentially expressed in response to RBSDV infection will contribute to future studies to elucidate the complex miRNA-mediated regulatory network activated by pathogen challenge in insect vectors.

Rapid identification and classification of Listeria spp. and serotype assignment of Listeria monocytogenes using fourier transform-infrared spectroscopy and artificial neural network analysis

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The use of Fourier Transform-Infrared Spectroscopy (FT-IR) in conjunction with Artificial Neural Network software, NeuroDeveloper™ was examined for the rapid identification and classification of Listeria species and serotyping of Listeria monocytogenes. A spectral library was created for 245 strains...

Incorporating price-responsive customers in day-ahead scheduling of smart distribution networks

International Nuclear Information System (INIS)

Mazidi, Mohammadreza; Monsef, Hassan; Siano, Pierluigi

2016-01-01

Highlights: • Proposing a model for incorporating price-responsive customers in day-ahead scheduling of smart distribution networks; this model provides a win–win situation. • Introducing a risk management model based on a bi-level information-gap decision theory and recasting it into its equivalent single-level robust optimization problem using Karush–Kuhn–Tucker optimality conditions. • Utilizing mixed-integer linear programing formulation that is efficiently solved by commercial optimization software. - Abstract: Demand response and real-time pricing of electricity are key factors in a smart grid as they can increase economic efficiency and technical performances of power grids. This paper focuses on incorporating price-responsive customers in day-ahead scheduling of smart distribution networks under a dynamic pricing environment. A novel method is proposed and formulated as a tractable mixed integer linear programming optimization problem whose objective is to find hourly sale prices offered to customers, transactions (purchase/sale) with the wholesale market, commitment of distribution generation units, dispatch of battery energy storage systems and planning of interruptible loads in a way that the profit of the distribution network operator is maximized while customers’ benefit is guaranteed. To hedge distribution network operator against financial risk arising from uncertainty of wholesale market prices, a risk management model based on a bi-level information-gap decision theory is proposed. The proposed bi-level problem is solved by recasting it into its equivalent single-level robust optimization problem using Karush–Kuhn–Tucker optimality conditions. Performance of the proposed model is verified by applying it to a modified version of the IEEE 33-bus distribution test network. Numerical results demonstrate the effectiveness and efficiency of the proposed method.

Frequency response function-based explicit framework for dynamic identification in human-structure systems

Science.gov (United States)

Wei, Xiaojun; Živanović, Stana

2018-05-01

The aim of this paper is to propose a novel theoretical framework for dynamic identification in a structure occupied by a single human. The framework enables the prediction of the dynamics of the human-structure system from the known properties of the individual system components, the identification of human body dynamics from the known dynamics of the empty structure and the human-structure system and the identification of the properties of the structure from the known dynamics of the human and the human-structure system. The novelty of the proposed framework is the provision of closed-form solutions in terms of frequency response functions obtained by curve fitting measured data. The advantages of the framework over existing methods are that there is neither need for nonlinear optimisation nor need for spatial/modal models of the empty structure and the human-structure system. In addition, the second-order perturbation method is employed to quantify the effect of uncertainties in human body dynamics on the dynamic identification of the empty structure and the human-structure system. The explicit formulation makes the method computationally efficient and straightforward to use. A series of numerical examples and experiments are provided to illustrate the working of the method.

Surrogate-assisted identification of influences of network construction on evolving weighted functional networks

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Stahn, Kirsten; Lehnertz, Klaus

2017-12-01

We aim at identifying factors that may affect the characteristics of evolving weighted networks derived from empirical observations. To this end, we employ various chains of analysis that are often used in field studies for a data-driven derivation and characterization of such networks. As an example, we consider fully connected, weighted functional brain networks before, during, and after epileptic seizures that we derive from multichannel electroencephalographic data recorded from epilepsy patients. For these evolving networks, we estimate clustering coefficient and average shortest path length in a time-resolved manner. Lastly, we make use of surrogate concepts that we apply at various levels of the chain of analysis to assess to what extent network characteristics are dominated by properties of the electroencephalographic recordings and/or the evolving weighted networks, which may be accessible more easily. We observe that characteristics are differently affected by the unavoidable referencing of the electroencephalographic recording, by the time-series-analysis technique used to derive the properties of network links, and whether or not networks were normalized. Importantly, for the majority of analysis settings, we observe temporal evolutions of network characteristics to merely reflect the temporal evolutions of mean interaction strengths. Such a property of the data may be accessible more easily, which would render the weighted network approach—as used here—as an overly complicated description of simple aspects of the data.

Guest editorial - Networked collaboration, sharing and response

Directory of Open Access Journals (Sweden)

Olav Skundberg

2008-11-01

Full Text Available  This issue of Seminar.net contains three articles that were written in connection with a Norwegian e-learning conference titled “Networked collaboration, sharing and response”. The conference was held in Mars 2008 in Trondheim, and the presentations from the conference is available (in norwegian language at http://www.nvu.no. Networked collaboration was chosen as a theme because collaboration is important to achieve learning, according to the social-constructivistic pedagogy that has a strong standing in Norway, but how should this occur on the net? Sharing of content, as in digital learning resources, is a phenomenon with increasing popularity as described in the OECD-report “Giving Knowledge for Free”. But to achieve reuse of content, not only publishing it, it is important with a networked community where the plethora of information can be sorted with relevance to specific topics. Response is about guiding, coaching and tutoring. In what ways may resources and tools be used to move in the direction of solving Bloom’s two sigma problem/challenge? The first article, by Morten Flate Paulsen, shows how cooperative learning can be implemented successfully so that students have optimal individual freedom within online learning communities. The second article, by Carl F. Dons, shows how student teachers can be prepared to deal with pupils who have a wide range of experiences of the digital world. The third and last article, by Kristin Dale, is sharing experiences with multiple choice-tests to give midterm responses to students. In addition, this issue has a commentary article by Rune Krumsvik discussing the need to develop new practices for teachers and students on the background of the digital developments. The conference and articles covers three big themes. It may be difficult to find more important issues, apart from finding money and time to support its development. Olav Skundberg, guest editorAssociate professor

Structured chaos shapes spike-response noise entropy in balanced neural networks

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Guillaume eLajoie

2014-10-01

Full Text Available Large networks of sparsely coupled, excitatory and inhibitory cells occur throughout the brain. For many models of these networks, a striking feature is that their dynamics are chaotic and thus, are sensitive to small perturbations. How does this chaos manifest in the neural code? Specifically, how variable are the spike patterns that such a network produces in response to an input signal? To answer this, we derive a bound for a general measure of variability -- spike-train entropy. This leads to important insights on the variability of multi-cell spike pattern distributions in large recurrent networks of spiking neurons responding to fluctuating inputs. The analysis is based on results from random dynamical systems theory and is complemented by detailed numerical simulations. We find that the spike pattern entropy is an order of magnitude lower than what would be extrapolated from single cells. This holds despite the fact that network coupling becomes vanishingly sparse as network size grows -- a phenomenon that depends on ``extensive chaos, as previously discovered for balanced networks without stimulus drive. Moreover, we show how spike pattern entropy is controlled by temporal features of the inputs. Our findings provide insight into how neural networks may encode stimuli in the presence of inherently chaotic dynamics.

WATERSHED ALGORITHM BASED SEGMENTATION FOR HANDWRITTEN TEXT IDENTIFICATION

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P. Mathivanan

2014-02-01

Full Text Available In this paper we develop a system for writer identification which involves four processing steps like preprocessing, segmentation, feature extraction and writer identification using neural network. In the preprocessing phase the handwritten text is subjected to slant removal process for segmentation and feature extraction. After this step the text image enters into the process of noise removal and gray level conversion. The preprocessed image is further segmented by using morphological watershed algorithm, where the text lines are segmented into single words and then into single letters. The segmented image is feature extracted by Daubechies’5/3 integer wavelet transform to reduce training complexity [1, 6]. This process is lossless and reversible [10], [14]. These extracted features are given as input to our neural network for writer identification process and a target image is selected for each training process in the 2-layer neural network. With the several trained output data obtained from different target help in text identification. It is a multilingual text analysis which provides simple and efficient text segmentation.

Software package developments around TAPS multidetector: on-line management of GANIL data; mesons neutral identification with the help of neural networks

International Nuclear Information System (INIS)

Lefevre, F.

1993-02-01

The photon multidetector system TAPS, a European collaboration, was installed for the second series of experiments at GANIL in the fall of 1992. It was used in conjunction with a multidetector for charged particles and the high resolution spectrometer SPEG. This experimental set-up is described. A dedicated software package, written in the PAW environment, for the online control and analysis of data has been developed and is described in detail. One aspect of the TAPS experimental program involves the detection of neutral mesons via two-photon decay. The identification by this decay channel is not trivial due to the so-called combinatorial background-the generation of photon pairs not associated with a meson decay. A method based on a neural network has been developed in order to aid in the extraction of the meson signal. The method is based on that of Hopfield and has been modified to incorporate the self-connection of cells. Our network is thus well suited to solve optimization problems where the initial state of the system represents the data constituting the problem. The performance of the network is presented using simulations and it is demonstrated that the signal-to-noise ratio can be improved given constraints on the solid angle of the detector and the correct identification of the photons

Networks and learning: communities, practices and the metaphor of networks–a response

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Chris Jones

2004-12-01

Full Text Available I am pleased to have the opportunity to react to Bruce Ingraham's response to my article ‘Networks and learning: communities, practices and the metaphor of networks' (Jones, 2004. It is rare to have a dialogue with someone who has taken the time and trouble to consider what you have written for a journal. All too often reviewing is a one-way process with the reviewer remaining anonymous. It is all the more pleasant to have a response to what you have written that gets to grips with some of the issues that the author also finds troubling. It is in that spirit that I write this reaction to Ingraham; it is an opportunity for me to develop some of the points he has identified as problematic in the original article. I want to concentrate on two main issues, firstly the network metaphor itself and secondly the usefulness of abstraction and representations of various types.

Identification of T1D susceptibility genes within the MHC region by combining protein interaction networks and SNP genotyping data

DEFF Research Database (Denmark)

Brorsson, C.; Hansen, Niclas Tue; Hansen, Kasper Lage

2009-01-01

genes. We have developed a novel method that combines single nucleotide polymorphism (SNP) genotyping data with protein-protein interaction (ppi) networks to identify disease-associated network modules enriched for proteins encoded from the MHC region. Approximately 2500 SNPs located in the 4 Mb MHC......To develop novel methods for identifying new genes that contribute to the risk of developing type 1 diabetes within the Major Histocompatibility Complex (MHC) region on chromosome 6, independently of the known linkage disequilibrium (LD) between human leucocyte antigen (HLA)-DRB1, -DQA1, -DQB1...... region were analysed in 1000 affected offspring trios generated by the Type 1 Diabetes Genetics Consortium (T1DGC). The most associated SNP in each gene was chosen and genes were mapped to ppi networks for identification of interaction partners. The association testing and resulting interacting protein...

De-identification of clinical notes via recurrent neural network and conditional random field.

Science.gov (United States)

Liu, Zengjian; Tang, Buzhou; Wang, Xiaolong; Chen, Qingcai

2017-11-01

De-identification, identifying information from data, such as protected health information (PHI) present in clinical data, is a critical step to enable data to be shared or published. The 2016 Centers of Excellence in Genomic Science (CEGS) Neuropsychiatric Genome-scale and RDOC Individualized Domains (N-GRID) clinical natural language processing (NLP) challenge contains a de-identification track in de-identifying electronic medical records (EMRs) (i.e., track 1). The challenge organizers provide 1000 annotated mental health records for this track, 600 out of which are used as a training set and 400 as a test set. We develop a hybrid system for the de-identification task on the training set. Firstly, four individual subsystems, that is, a subsystem based on bidirectional LSTM (long-short term memory, a variant of recurrent neural network), a subsystem-based on bidirectional LSTM with features, a subsystem based on conditional random field (CRF) and a rule-based subsystem, are used to identify PHI instances. Then, an ensemble learning-based classifiers is deployed to combine all PHI instances predicted by above three machine learning-based subsystems. Finally, the results of the ensemble learning-based classifier and the rule-based subsystem are merged together. Experiments conducted on the official test set show that our system achieves the highest micro F1-scores of 93.07%, 91.43% and 95.23% under the "token", "strict" and "binary token" criteria respectively, ranking first in the 2016 CEGS N-GRID NLP challenge. In addition, on the dataset of 2014 i2b2 NLP challenge, our system achieves the highest micro F1-scores of 96.98%, 95.11% and 98.28% under the "token", "strict" and "binary token" criteria respectively, outperforming other state-of-the-art systems. All these experiments prove the effectiveness of our proposed method. Copyright © 2017. Published by Elsevier Inc.

System identification and adaptive control theory and applications of the neurofuzzy and fuzzy cognitive network models

CERN Document Server

Boutalis, Yiannis; Kottas, Theodore; Christodoulou, Manolis A

2014-01-01

Presenting current trends in the development and applications of intelligent systems in engineering, this monograph focuses on recent research results in system identification and control. The recurrent neurofuzzy and the fuzzy cognitive network (FCN) models are presented.  Both models are suitable for partially-known or unknown complex time-varying systems. Neurofuzzy Adaptive Control contains rigorous proofs of its statements which result in concrete conclusions for the selection of the design parameters of the algorithms presented. The neurofuzzy model combines concepts from fuzzy systems and recurrent high-order neural networks to produce powerful system approximations that are used for adaptive control. The FCN model  stems  from fuzzy cognitive maps and uses the notion of “concepts” and their causal relationships to capture the behavior of complex systems. The book shows how, with the benefit of proper training algorithms, these models are potent system emulators suitable for use in engineering s...

Language Identification in Short Utterances Using Long Short-Term Memory (LSTM) Recurrent Neural Networks.

Science.gov (United States)

Zazo, Ruben; Lozano-Diez, Alicia; Gonzalez-Dominguez, Javier; Toledano, Doroteo T; Gonzalez-Rodriguez, Joaquin

2016-01-01

Long Short Term Memory (LSTM) Recurrent Neural Networks (RNNs) have recently outperformed other state-of-the-art approaches, such as i-vector and Deep Neural Networks (DNNs), in automatic Language Identification (LID), particularly when dealing with very short utterances (∼3s). In this contribution we present an open-source, end-to-end, LSTM RNN system running on limited computational resources (a single GPU) that outperforms a reference i-vector system on a subset of the NIST Language Recognition Evaluation (8 target languages, 3s task) by up to a 26%. This result is in line with previously published research using proprietary LSTM implementations and huge computational resources, which made these former results hardly reproducible. Further, we extend those previous experiments modeling unseen languages (out of set, OOS, modeling), which is crucial in real applications. Results show that a LSTM RNN with OOS modeling is able to detect these languages and generalizes robustly to unseen OOS languages. Finally, we also analyze the effect of even more limited test data (from 2.25s to 0.1s) proving that with as little as 0.5s an accuracy of over 50% can be achieved.

Employees' responses to an organizational merger: Intraindividual change in organizational identification, attachment, and turnover.

Science.gov (United States)

Sung, Wookje; Woehler, Meredith L; Fagan, Jesse M; Grosser, Travis J; Floyd, Theresa M; Labianca, Giuseppe Joe

2017-06-01

The authors used pre-post merger data from 599 employees experiencing a major corporate merger to compare 3 conceptual models based on the logic of social identity theory (SIT) and exchange theory to explain employees' merger responses. At issue is how perceived change in employees' own jobs and roles (i.e., personal valence) and perceived change in their organization's status and merger appropriateness (i.e., organizational valence) affect their changing organizational identification, attachment attitudes, and voluntary turnover. The first model suggests that organizational identification and organizational attachment develop independently and have distinct antecedents. The second model posits that organizational identification mediates the relationships between change in organizational and personal valence and change in attachment and turnover. The third model posits that change in personal valence moderates the relationship between changes in organizational valence and in organizational identification and attachment. Using latent difference score (LDS) modeling in an SEM framework and survival analysis, the results suggest an emergent fourth model that integrates the first and second models: Although change in organizational identification during the merger mediates the relationship between change in personal status and organizational valence and change in attachment, there is a direct and unmediated relationship between change in personal valence and attachment. This integrated model has implications for M&A theory and practice. (PsycINFO Database Record (c) 2017 APA, all rights reserved).

A new approach for visual identification of orange varieties using neural networks and metaheuristic algorithms

Directory of Open Access Journals (Sweden)

Sajad Sabzi

2018-03-01

Full Text Available Accurate classification of fruit varieties in processing factories and during post-harvesting applications is a challenge that has been widely studied. This paper presents a novel approach to automatic fruit identification applied to three common varieties of oranges (Citrus sinensis L., namely Bam, Payvandi and Thomson. A total of 300 color images were used for the experiments, 100 samples for each orange variety, which are publicly available. After segmentation, 263 parameters, including texture, color and shape features, were extracted from each sample using image processing. Among them, the 6 most effective features were automatically selected by using a hybrid approach consisting of an artificial neural network and particle swarm optimization algorithm (ANN-PSO. Then, three different classifiers were applied and compared: hybrid artificial neural network – artificial bee colony (ANN-ABC; hybrid artificial neural network – harmony search (ANN-HS; and k-nearest neighbors (kNN. The experimental results show that the hybrid approaches outperform the results of kNN. The average correct classification rate of ANN-HS was 94.28%, while ANN-ABS achieved 96.70% accuracy with the available data, contrasting with the 70.9% baseline accuracy of kNN. Thus, this new proposed methodology provides a fast and accurate way to classify multiple fruits varieties, which can be easily implemented in processing factories. The main contribution of this work is that the method can be directly adapted to other use cases, since the selection of the optimal features and the configuration of the neural network are performed automatically using metaheuristic algorithms.

Neural dynamics of event segmentation in music: converging evidence for dissociable ventral and dorsal networks.

Science.gov (United States)

Sridharan, Devarajan; Levitin, Daniel J; Chafe, Chris H; Berger, Jonathan; Menon, Vinod

2007-08-02

The real world presents our sensory systems with a continuous stream of undifferentiated information. Segmentation of this stream at event boundaries is necessary for object identification and feature extraction. Here, we investigate the neural dynamics of event segmentation in entire musical symphonies under natural listening conditions. We isolated time-dependent sequences of brain responses in a 10 s window surrounding transitions between movements of symphonic works. A strikingly right-lateralized network of brain regions showed peak response during the movement transitions when, paradoxically, there was no physical stimulus. Model-dependent and model-free analysis techniques provided converging evidence for activity in two distinct functional networks at the movement transition: a ventral fronto-temporal network associated with detecting salient events, followed in time by a dorsal fronto-parietal network associated with maintaining attention and updating working memory. Our study provides direct experimental evidence for dissociable and causally linked ventral and dorsal networks during event segmentation of ecologically valid auditory stimuli.

Identification of Resting State Networks Involved in Executive Function.

Science.gov (United States)

Connolly, Joanna; McNulty, Jonathan P; Boran, Lorraine; Roche, Richard A P; Delany, David; Bokde, Arun L W

2016-06-01

The structural networks in the human brain are consistent across subjects, and this is reflected also in that functional networks across subjects are relatively consistent. These findings are not only present during performance of a goal oriented task but there are also consistent functional networks during resting state. It suggests that goal oriented activation patterns may be a function of component networks identified using resting state. The current study examines the relationship between resting state networks measured and patterns of neural activation elicited during a Stroop task. The association between the Stroop-activated networks and the resting state networks was quantified using spatial linear regression. In addition, we investigated if the degree of spatial association of resting state networks with the Stroop task may predict performance on the Stroop task. The results of this investigation demonstrated that the Stroop activated network can be decomposed into a number of resting state networks, which were primarily associated with attention, executive function, visual perception, and the default mode network. The close spatial correspondence between the functional organization of the resting brain and task-evoked patterns supports the relevance of resting state networks in cognitive function.

Repeated exposure to media violence is associated with diminished response in an inhibitory frontolimbic network.

Directory of Open Access Journals (Sweden)

Christopher R Kelly

Full Text Available BACKGROUND: Media depictions of violence, although often claimed to induce viewer aggression, have not been shown to affect the cortical networks that regulate behavior. METHODOLOGY/PRINCIPAL FINDINGS: Using functional magnetic resonance imaging (fMRI, we found that repeated exposure to violent media, but not to other equally arousing media, led to both diminished response in right lateral orbitofrontal cortex (right ltOFC and a decrease in right ltOFC-amygdala interaction. Reduced function in this network has been previously associated with decreased control over a variety of behaviors, including reactive aggression. Indeed, we found reduced right ltOFC responses to be characteristic of those subjects that reported greater tendencies toward reactive aggression. Furthermore, the violence-induced reduction in right ltOFC response coincided with increased throughput to behavior planning regions. CONCLUSIONS: These novel findings establish that even short-term exposure to violent media can result in diminished responsiveness of a network associated with behaviors such as reactive aggression.

Snapshot of iron response in Shewanella oneidensis by gene network reconstruction

Energy Technology Data Exchange (ETDEWEB)

Yang, Yunfeng; Harris, Daniel P.; Luo, Feng; Xiong, Wenlu; Joachimiak, Marcin; Wu, Liyou; Dehal, Paramvir; Jacobsen, Janet; Yang, Zamin; Palumbo, Anthony V.; Arkin, Adam P.; Zhou, Jizhong

2008-10-09

Background: Iron homeostasis of Shewanella oneidensis, a gamma-proteobacterium possessing high iron content, is regulated by a global transcription factor Fur. However, knowledge is incomplete about other biological pathways that respond to changes in iron concentration, as well as details of the responses. In this work, we integrate physiological, transcriptomics and genetic approaches to delineate the iron response of S. oneidensis. Results: We show that the iron response in S. oneidensis is a rapid process. Temporal gene expression profiles were examined for iron depletion and repletion, and a gene co-expression network was reconstructed. Modules of iron acquisition systems, anaerobic energy metabolism and protein degradation were the most noteworthy in the gene network. Bioinformatics analyses suggested that genes in each of the modules might be regulated by DNA-binding proteins Fur, CRP and RpoH, respectively. Closer inspection of these modules revealed a transcriptional regulator (SO2426) involved in iron acquisition and ten transcriptional factors involved in anaerobic energy metabolism. Selected genes in the network were analyzed by genetic studies. Disruption of genes encoding a putative alcaligin biosynthesis protein (SO3032) and a gene previously implicated in protein degradation (SO2017) led to severe growth deficiency under iron depletion conditions. Disruption of a novel transcriptional factor (SO1415) caused deficiency in both anaerobic iron reduction and growth with thiosulfate or TMAO as an electronic acceptor, suggesting that SO1415 is required for specific branches of anaerobic energy metabolism pathways. Conclusions: Using a reconstructed gene network, we identified major biological pathways that were differentially expressed during iron depletion and repletion. Genetic studies not only demonstrated the importance of iron acquisition and protein degradation for iron depletion, but also characterized a novel transcriptional factor (SO1415) with a

Microscale force response and morphology of tunable co-polymerized cytoskeleton networks

Science.gov (United States)

Ricketts, Shea; Yadav, Vikrant; Ross, Jennifer L.; Robertson-Anderson, Rae M.

The cytoskeleton is largely comprised of actin and microtubules that entangle and crosslink to form complex networks and structures, giving rise to nonlinear multifunctional mechanics in cells. The relative concentrations of semiflexible actin filaments and rigid microtubules tune cytoskeleton function, allowing cells to move and divide while maintaining rigidity and resilience. To elucidate this complex tunability, we create in vitro composites of co-polymerized actin and microtubules with actin:microtubule molar ratios of 0:1-1:0. We use optical tweezers and confocal microscopy to characterize the nonlinear microscale force response and morphology of the composites. We optically drag a microsphere 30 μm through varying actin-microtubule networks at 10 μm/s and 20 μm/s, and measure the force the networks exerts to resist the strain and the force relaxation following strain. We use dual-color confocal microscopy to image distinctly-labeled filaments in the networks, and characterize the integration of actin and microtubules, network connectivity, and filament rigidity. We find that increasing the fraction of microtubules in networks non-monotonically increases elasticity and stiffness, and hinders force relaxation by suppressing network mobility and fluctuations. NSF CAREER Award (DMR-1255446), Scialog Collaborative Innovation Award funded by Research Corporation for Scientific Advancement (Grant No. 24192).

Network-based Type-2 Fuzzy System with Water Flow Like Algorithm for System Identification and Signal Processing

Directory of Open Access Journals (Sweden)

Che-Ting Kuo

2015-02-01

Full Text Available This paper introduces a network-based interval type-2 fuzzy inference system (NT2FIS with a dynamic solution agent algorithm water flow like algorithm (WFA, for nonlinear system identification and blind source separation (BSS problem. The NT2FIS consists of interval type-2 asymmetric fuzzy membership functions and TSK-type consequent parts to enhance the performance. The proposed scheme is optimized by a new heuristic learning algorithm, WFA, with dynamic solution agents. The proposed WFA is inspired by the natural behavior of water flow. Splitting, moving, merging, evaporation, and precipitation have all been introduced for optimization. Some modifications, including new moving strategies, such as the application of tabu searching and gradient-descent techniques, are proposed to enhance the performance of the WFA in training the NT2FIS systems. Simulation and comparison results for nonlinear system identification and blind signal separation are presented to illustrate the performance and effectiveness of the proposed approach.

IdentiCS – Identification of coding sequence and in silico reconstruction of the metabolic network directly from unannotated low-coverage bacterial genome sequence

Directory of Open Access Journals (Sweden)

Zeng An-Ping

2004-08-01

Full Text Available Abstract Background A necessary step for a genome level analysis of the cellular metabolism is the in silico reconstruction of the metabolic network from genome sequences. The available methods are mainly based on the annotation of genome sequences including two successive steps, the prediction of coding sequences (CDS and their function assignment. The annotation process takes time. The available methods often encounter difficulties when dealing with unfinished error-containing genomic sequence. Results In this work a fast method is proposed to use unannotated genome sequence for predicting CDSs and for an in silico reconstruction of metabolic networks. Instead of using predicted genes or CDSs to query public databases, entries from public DNA or protein databases are used as queries to search a local database of the unannotated genome sequence to predict CDSs. Functions are assigned to the predicted CDSs simultaneously. The well-annotated genome of Salmonella typhimurium LT2 is used as an example to demonstrate the applicability of the method. 97.7% of the CDSs in the original annotation are correctly identified. The use of SWISS-PROT-TrEMBL databases resulted in an identification of 98.9% of CDSs that have EC-numbers in the published annotation. Furthermore, two versions of sequences of the bacterium Klebsiella pneumoniae with different genome coverage (3.9 and 7.9 fold, respectively are examined. The results suggest that a 3.9-fold coverage of the bacterial genome could be sufficiently used for the in silico reconstruction of the metabolic network. Compared to other gene finding methods such as CRITICA our method is more suitable for exploiting sequences of low genome coverage. Based on the new method, a program called IdentiCS (Identification of Coding Sequences from Unfinished Genome Sequences is delivered that combines the identification of CDSs with the reconstruction, comparison and visualization of metabolic networks (free to download

An approach to unfold the response of a multi-element system using an artificial neural network

International Nuclear Information System (INIS)

Cordes, E.; Fehrenbacher, G.; Schuetz, R.; Sprunck, M.; Hahn, K.; Hofmann, R.; Wahl, W.

1998-01-01

An unfolding procedure is proposed which aims at obtaining spectral information of a neutron radiation field by the analysis of the response of a multi-element system consisting of converter type semiconductors. For the unfolding procedure an artificial neural network (feed forward network), trained by the back-propagation method, was used. The response functions of the single elements to neutron radiation were calculated by application of a computational model for an energy range from 10 -2 eV to 10 MeV. The training of the artificial neural network was based on the computation of responses of a six-element system for a set of 300 neutron spectra and the application of the back-propagation method. The validation was performed by the unfolding of 100 computed responses. Two unfolding examples were pointed out for the determination of the neutron spectra. The spectra resulting from the unfolding procedure agree well with the original spectra used for the response computation

Response of moose to a high‐density road network

Science.gov (United States)

Wattles, David W.; Zeller, Katherine A.; DeStefano, Stephen

2018-01-01

Road networks and the disturbance associated with vehicle traffic alter animal behavior, movements, and habitat selection. The response of moose (Alces americanus) to roads has been documented in relatively rural areas, but less is known about moose response to roads in more highly roaded landscapes. We examined road‐crossing frequencies and habitat use of global positioning system (GPS)‐collared moose in Massachusetts, USA, where moose home ranges have road densities approximately twice that of previous studies. We compared seasonal road‐crossing frequencies of moose with a null movement model. We estimated moose travel speeds during road‐crossing events and compared them with speeds during other home range movements. To estimate the extent of the road effect zone and determine how roads influenced moose habitat use, we fit a third‐order resource selection function. With the exception of the lowest use road class (roads less than expected based on the null movement model and frequency decreased with increasing road size and traffic. Moose crossed roads faster than they traveled during other times. This effect increased with increasing road use intensity. Overall, roads were a major factor determining what portions of Massachusetts moose used and how they moved among habitat patches. Our results suggest that moose in Massachusetts can adapt to a high‐density road network, but the road effect is still strongly negative and, in some cases, is more pronounced than in study areas with lower road densities. Future road construction and the expansion of road networks may have a large effect on moose and other wildlife.

Functional Module Analysis for Gene Coexpression Networks with Network Integration.

Science.gov (United States)

Zhang, Shuqin; Zhao, Hongyu; Ng, Michael K

2015-01-01

Network has been a general tool for studying the complex interactions between different genes, proteins, and other small molecules. Module as a fundamental property of many biological networks has been widely studied and many computational methods have been proposed to identify the modules in an individual network. However, in many cases, a single network is insufficient for module analysis due to the noise in the data or the tuning of parameters when building the biological network. The availability of a large amount of biological networks makes network integration study possible. By integrating such networks, more informative modules for some specific disease can be derived from the networks constructed from different tissues, and consistent factors for different diseases can be inferred. In this paper, we have developed an effective method for module identification from multiple networks under different conditions. The problem is formulated as an optimization model, which combines the module identification in each individual network and alignment of the modules from different networks together. An approximation algorithm based on eigenvector computation is proposed. Our method outperforms the existing methods, especially when the underlying modules in multiple networks are different in simulation studies. We also applied our method to two groups of gene coexpression networks for humans, which include one for three different cancers, and one for three tissues from the morbidly obese patients. We identified 13 modules with three complete subgraphs, and 11 modules with two complete subgraphs, respectively. The modules were validated through Gene Ontology enrichment and KEGG pathway enrichment analysis. We also showed that the main functions of most modules for the corresponding disease have been addressed by other researchers, which may provide the theoretical basis for further studying the modules experimentally.

[Analysis of different pipe corrosion by ESEM and bacteria identification by API in pilot distribution network].

Science.gov (United States)

Wu, Qing; Zhao, Xinhua; Yu, Qing; Li, Jun

2008-07-01

To understand the corrosion of different material water supply pipelines and bacterium in drinking water and biofilms. A pilot distribution network was built and water quality detection was made on popular pipelines of galvanized iron pipe, PPR and ABS plastic pipes by ESEM (environmental scanning electron microscopy). Bacterium in drinking water and biofilms were identified by API Bacteria Identification System 10s and 20E (Biomerieux, France), and pathogenicity of bacterium were estimated. Galvanized zinc pipes were seriously corroded; there were thin layers on inner face of PPR and ABS plastic pipes. 10 bacterium (got from water samples) were identified by API10S, in which 7 bacterium were opportunistic pathogens. 21 bacterium (got from water and biofilms samples) were identified by API20E, in which 5 bacterium were pathogens and 11 bacterium were opportunistic pathogens and 5 bacteria were not reported for their pathogenicities to human beings. The bacterial water quality of drinking water distribution networks were not good. Most bacterium in drinking water and biofilms on the inner face of pipeline of the drinking water distribution network were opportunistic pathogens, it could cause serious water supply accident, if bacteria spread in suitable conditions. In the aspect of pipe material, old pipelines should be changed by new material pipes.

Spatiotemporal characteristics of retinal response to network-mediated photovoltaic stimulation.

Science.gov (United States)

Ho, Elton; Smith, Richard; Goetz, Georges; Lei, Xin; Galambos, Ludwig; Kamins, Theodore I; Harris, James; Mathieson, Keith; Palanker, Daniel; Sher, Alexander

2018-02-01

Subretinal prostheses aim at restoring sight to patients blinded by photoreceptor degeneration using electrical activation of the surviving inner retinal neurons. Today, such implants deliver visual information with low-frequency stimulation, resulting in discontinuous visual percepts. We measured retinal responses to complex visual stimuli delivered at video rate via a photovoltaic subretinal implant and by visible light. Using a multielectrode array to record from retinal ganglion cells (RGCs) in the healthy and degenerated rat retina ex vivo, we estimated their spatiotemporal properties from the spike-triggered average responses to photovoltaic binary white noise stimulus with 70-μm pixel size at 20-Hz frame rate. The average photovoltaic receptive field size was 194 ± 3 μm (mean ± SE), similar to that of visual responses (221 ± 4 μm), but response latency was significantly shorter with photovoltaic stimulation. Both visual and photovoltaic receptive fields had an opposing center-surround structure. In the healthy retina, ON RGCs had photovoltaic OFF responses, and vice versa. This reversal is consistent with depolarization of photoreceptors by electrical pulses, as opposed to their hyperpolarization under increasing light, although alternative mechanisms cannot be excluded. In degenerate retina, both ON and OFF photovoltaic responses were observed, but in the absence of visual responses, it is not clear what functional RGC types they correspond to. Degenerate retina maintained the antagonistic center-surround organization of receptive fields. These fast and spatially localized network-mediated ON and OFF responses to subretinal stimulation via photovoltaic pixels with local return electrodes raise confidence in the possibility of providing more functional prosthetic vision. NEW & NOTEWORTHY Retinal prostheses currently in clinical use have struggled to deliver visual information at naturalistic frequencies, resulting in discontinuous percepts. We

Network Understanding of Herb Medicine via Rapid Identification of Ingredient-Target Interactions

Science.gov (United States)

Zhang, Hai-Ping; Pan, Jian-Bo; Zhang, Chi; Ji, Nan; Wang, Hao; Ji, Zhi-Liang

2014-01-01

Today, herb medicines have become the major source for discovery of novel agents in countermining diseases. However, many of them are largely under-explored in pharmacology due to the limitation of current experimental approaches. Therefore, we proposed a computational framework in this study for network understanding of herb pharmacology via rapid identification of putative ingredient-target interactions in human structural proteome level. A marketing anti-cancer herb medicine in China, Yadanzi (Brucea javanica), was chosen for mechanistic study. Total 7,119 ingredient-target interactions were identified for thirteen Yadanzi active ingredients. Among them, about 29.5% were estimated to have better binding affinity than their corresponding marketing drug-target interactions. Further Bioinformatics analyses suggest that simultaneous manipulation of multiple proteins in the MAPK signaling pathway and the phosphorylation process of anti-apoptosis may largely answer for Yadanzi against non-small cell lung cancers. In summary, our strategy provides an efficient however economic solution for systematic understanding of herbs' power.

Comparison of functional network connectivity for passive-listening and active-response narrative comprehension in adolescents.

Science.gov (United States)

Wang, Yingying; Holland, Scott K

2014-05-01

Comprehension of narrative stories plays an important role in the development of language skills. In this study, we compared brain activity elicited by a passive-listening version and an active-response (AR) version of a narrative comprehension task by using independent component (IC) analysis on functional magnetic resonance imaging data from 21 adolescents (ages 14-18 years). Furthermore, we explored differences in functional network connectivity engaged by two versions of the task and investigated the relationship between the online response time and the strength of connectivity between each pair of ICs. Despite similar brain region involvements in auditory, temporoparietal, and frontoparietal language networks for both versions, the AR version engages some additional network elements including the left dorsolateral prefrontal, anterior cingulate, and sensorimotor networks. These additional involvements are likely associated with working memory and maintenance of attention, which can be attributed to the differences in cognitive strategic aspects of the two versions. We found significant positive correlation between the online response time and the strength of connectivity between an IC in left inferior frontal region and an IC in sensorimotor region. An explanation for this finding is that longer reaction time indicates stronger connection between the frontal and sensorimotor networks caused by increased activation in adolescents who require more effort to complete the task.

An identification method of orbit responses rooting in vibration analysis of rotor during touchdowns of active magnetic bearings

Science.gov (United States)

Liu, Tao; Lyu, Mindong; Wang, Zixi; Yan, Shaoze

2018-02-01

Identification of orbit responses can make the active protection operation more easily realize for active magnetic bearings (AMB) in case of touchdowns. This paper presents an identification method of the orbit responses rooting on signal processing of rotor displacements during touchdowns. The recognition method consists of two major steps. Firstly, the combined rub and bouncing is distinguished from the other orbit responses by the mathematical expectation of axis displacements of the rotor. Because when the combined rub and bouncing occurs, the rotor of AMB will not be always close to the touchdown bearings (TDB). Secondly, we recognize the pendulum vibration and the full rub by the Fourier spectrum of displacement in horizontal direction, as the frequency characteristics of the two responses are different. The principle of the whole identification algorithm is illustrated by two sets of signal generated by a dynamic model of the specific rotor-TDB system. The universality of the method is validated by other four sets of signal. Besides, the adaptability of noise is also tested by adding white noises with different strengths, and the result is promising. As the mathematical expectation and Discrete Fourier transform are major calculations of the algorithm, the calculation quantity of the algorithm is low, so it is fast, easily realized and embedded in the AMB controller, which has an important engineering value for the protection of AMBs during touchdowns.

Olfactory identification deficits and associated response inhibition in obsessive-compulsive disorder: on the scent of the orbitofronto-striatal model.

Science.gov (United States)

Bersani, Giuseppe; Quartini, Adele; Ratti, Flavia; Pagliuca, Giulio; Gallo, Andrea

2013-11-30

Olfactory identification ability implicates the integrity of the orbitofrontal cortex (OFC). The fronto-striatal circuits including the OFC have been involved in the neuropathology of Obsessive Compulsive Disorder (OCD). However, only a few studies have examined olfactory function in patients with OCD. The Brief Smell Identification Test (B-SIT) and tests from the Cambridge Neuropsychological Automated Battery (CANTAB) were administered to 25 patients with OCD and to 21 healthy matched controls. OCD patients showed a significant impairment in olfactory identification ability as well as widely distributed cognitive deficits in visual memory, executive functions, attention, and response inhibition. The degree of behavioural impairment on motor impulsivity (prolonged response inhibition Stop-Signal Reaction Time) strongly correlated with the B-SIT score. Our study is the first to indicate a shared OFC pathological neural substrate underlying olfactory identification impairment, impulsivity, and OCD. Deficits in visual memory, executive functions and attention further indicate that regions outside of the orbitofronto-striatal loop may be involved in this disorder. Such results may help delineate the clinical complexity of OCD and support more targeted investigations and interventions. In this regard, research on the potential diagnostic utility of olfactory identification deficits in the assessment of OCD would certainly be useful. Copyright © 2013 Elsevier Ireland Ltd. All rights reserved.

Faba bean drought responsive gene identification and validation

Directory of Open Access Journals (Sweden)

Megahed H. Ammar

2017-01-01

Full Text Available This study was carried out to identify drought-responsive genes in a drought tolerant faba bean variety (Hassawi 2 using a suppressive subtraction hybridization approach (SSH. A total of 913 differentially expressed clones were sequenced from a differential cDNA library that resulted in a total of 225 differentially expressed ESTs. The genes of mitochondrial and chloroplast origin were removed, and the remaining 137 EST sequences were submitted to the gene bank EST database (LIBEST_028448. A sequence analysis identified 35 potentially drought stress-related ESTs that regulate ion channels, kinases, and energy production and utilization and transcription factors. Quantitative PCR on Hassawi 2 genotype confirmed that more than 65% of selected drought-responsive genes were drought-related. Among these induced genes, the expression levels of eight highly up-regulated unigenes were further analyzed across 38 selected faba bean genotypes that differ in their drought tolerance levels. These unigenes included ribulose 1,5-bisphosphate carboxylase (rbcL gene, non-LTR retroelement reverse related, probable cyclic nucleotide-gated ion channel, polyubiquitin, potassium channel, calcium-dependent protein kinase and putative respiratory burst oxidase-like protein C and a novel unigene. The expression patterns of these unigenes were variable across 38 genotypes however, it was found to be very high in tolerant genotype. The up-regulation of these unigenes in majority of tolerant genotypes suggests their possible role in drought tolerance. The identification of possible drought responsive candidate genes in Vicia faba reported here is an important step toward the development of drought-tolerant genotypes that can cope with arid environments.

The grand illusion? corporate social responsibility in global garment production networks

OpenAIRE

Starmanns, M

2010-01-01

This PhD aims to generate a better understanding of corporate social responsibility (CSR) in global production networks. CSR is an umbrella term that deals with voluntary activities undertaken by companies and that indicate an ethos to act responsibly in society. This research focuses on CSR practices that aim towards improving working conditions in outsourced production factories by implementing so-called social standards, which often derive from core norms of the International Labour Organi...

A neural network-based approach to noise identification of interferometric GW antennas: the case of the 40 m Caltech laser interferometer

Energy Technology Data Exchange (ETDEWEB)

Acernese, F [Dipartimento di Scienze Fisiche, Universita di Napoli Federico II, Complesso Universitario di Monte S Angelo, via Cintia, I-80126 Naples (Italy); Barone, F [Istituto Nazionale di Fisica Nucleare, sez. Napoli, Complesso Universitario di Monte S Angelo, via Cintia, I-80126 Naples (Italy); Rosa, M de [Dipartimento di Scienze Fisiche, Universita di Napoli Federico II, Complesso Universitario di Monte S Angelo, via Cintia, I-80126 Naples (Italy); Rosa, R De [Dipartimento di Scienze Fisiche, Universita di Napoli Federico II, Complesso Universitario di Monte S Angelo, via Cintia, I-80126 Naples (Italy); Eleuteri, A [Istituto Nazionale di Fisica Nucleare, sez. Napoli, Complesso Universitario di Monte S Angelo, via Cintia, I-80126 Naples (Italy); Milano, L [Dipartimento di Scienze Fisiche, Universita di Napoli Federico II, Complesso Universitario di Monte S Angelo, via Cintia, I-80126 Naples (Italy); Tagliaferri, R [Dipartimento di Matematica ed Informatica, Universita di Salerno, via S Allende, I-84081 Baronissi (Salerno) (Italy)

2002-06-21

In this paper, a neural network-based approach is presented for the real time noise identification of a GW laser interferometric antenna. The 40 m Caltech laser interferometer output data provide a realistic test bed for noise identification algorithms because of the presence of many relevant effects: violin resonances in the suspensions, main power harmonics, ring-down noise from servo control systems, electronic noises, glitches and so on. These effects can be assumed to be present in all the first interferometric long baseline GW antennas such as VIRGO, LIGO, GEO and TAMA. For noise identification, we used the Caltech-40 m laser interferometer data. The results we obtained are pretty good notwithstanding the high initial computational cost. The algorithm we propose is general and robust, taking into account that it does not require a priori information on the data, nor a precise model, and it constitutes a powerful tool for time series data analysis.

A neural network-based approach to noise identification of interferometric GW antennas: the case of the 40 m Caltech laser interferometer

International Nuclear Information System (INIS)

Acernese, F; Barone, F; Rosa, M de; Rosa, R De; Eleuteri, A; Milano, L; Tagliaferri, R

2002-01-01

In this paper, a neural network-based approach is presented for the real time noise identification of a GW laser interferometric antenna. The 40 m Caltech laser interferometer output data provide a realistic test bed for noise identification algorithms because of the presence of many relevant effects: violin resonances in the suspensions, main power harmonics, ring-down noise from servo control systems, electronic noises, glitches and so on. These effects can be assumed to be present in all the first interferometric long baseline GW antennas such as VIRGO, LIGO, GEO and TAMA. For noise identification, we used the Caltech-40 m laser interferometer data. The results we obtained are pretty good notwithstanding the high initial computational cost. The algorithm we propose is general and robust, taking into account that it does not require a priori information on the data, nor a precise model, and it constitutes a powerful tool for time series data analysis

A neural network-based approach to noise identification of interferometric GW antennas: the case of the 40 m Caltech laser interferometer

CERN Document Server

Acernese, F; Rosa, M D; Rosa, R D; Eleuteri, A; Milano, L; Tagliaferri, R

2002-01-01

In this paper, a neural network-based approach is presented for the real time noise identification of a GW laser interferometric antenna. The 40 m Caltech laser interferometer output data provide a realistic test bed for noise identification algorithms because of the presence of many relevant effects: violin resonances in the suspensions, main power harmonics, ring-down noise from servo control systems, electronic noises, glitches and so on. These effects can be assumed to be present in all the first interferometric long baseline GW antennas such as VIRGO, LIGO, GEO and TAMA. For noise identification, we used the Caltech-40 m laser interferometer data. The results we obtained are pretty good notwithstanding the high initial computational cost. The algorithm we propose is general and robust, taking into account that it does not require a priori information on the data, nor a precise model, and it constitutes a powerful tool for time series data analysis.

Rapid-response Sensor Networks Leveraging Open Standards and the Internet of Things

Science.gov (United States)

Bermudez, L. E.; Lieberman, J. E.; Lewis, L.; Botts, M.; Liang, S.

2016-12-01

New sensor technologies provide an unparalleled capability to collect large numbers of diverse observations about the world around us. Networks of such sensors are especially effective for capturing and analyzing unexpected, fast moving events if they can be deployed with a minimum of time, effort, and cost. A rapid-response sensing and processing capability is extremely important in quickly unfolding events not only to collect data for future research.but also to support response efforts that may be needed by providing up-to-date knowledge of the situation. A recent pilot activity coordinated by the Open Geospatial Consortium combined Sensor Web Enablement (SWE) standards with Internet of Things (IoT) practices to understand better how to set up rapid-response sensor networks in comparable event situations involving accidents or disasters. The networks included weather and environmental sensors, georeferenced UAV and PTZ imagery collectors, and observations from "citizen sensors", as well as virtual observations generated by predictive models. A key feature of each "SWE-IoT" network was one or more Sensor Hubs that connected local, often proprietary sensor device protocols to a common set of standard SWE data types and standard Web interfaces on an IP-based internetwork. This IoT approach provided direct, common, interoperable access to all sensor readings from anywhere on the internetwork of sensors, Hubs, and applications. Sensor Hubs also supported an automated discovery protocol in which activated Hubs registered themselves with a canonical catalog service. As each sensor (wireless or wired) was activated within range of an authorized Hub, it registered itself with that Hub, which in turn registered the sensor and its capabilities with the catalog. Sensor Hub functions were implemented in a range of component types, from personal devices such as smartphones and Raspberry Pi's to full cloud-based sensor services platforms. Connected into a network

How prepared are we? : The organizational network responses in two infectious disease outbreak scenarios in the Netherlands

NARCIS (Netherlands)

Kenis, P.N.; Raab, J.; Kraaij – Dirkzwager, Marleen; Timen, A.

2017-01-01

The paper will report results of a research project on the organizational network response to prevent or contain an outbreak of an infectious disease in the Netherlands. The paper is one of the first to present an attempt to conduct an ex ante evaluation of a response network in a likely future

Automated species-level identification and segmentation of planktonic foraminifera using convolutional neural networks

Science.gov (United States)

Marchitto, T. M., Jr.; Mitra, R.; Zhong, B.; Ge, Q.; Kanakiya, B.; Lobaton, E.

2017-12-01

Identification and picking of foraminifera from sediment samples is often a laborious and repetitive task. Previous attempts to automate this process have met with limited success, but we show that recent advances in machine learning can be brought to bear on the problem. As a `proof of concept' we have developed a system that is capable of recognizing six species of extant planktonic foraminifera that are commonly used in paleoceanographic studies. Our pipeline begins with digital photographs taken under 16 different illuminations using an LED ring, which are then fused into a single 3D image. Labeled image sets were used to train various types of image classification algorithms, and performance on unlabeled image sets was measured in terms of precision (whether IDs are correct) and recall (what fraction of the target species are found). We find that Convolutional Neural Network (CNN) approaches achieve precision and recall values between 80 and 90%, which is similar precision and better recall than human expert performance using the same type of photographs. We have also trained a CNN to segment the 3D images into individual chambers and apertures, which can not only improve identification performance but also automate the measurement of foraminifera for morphometric studies. Given that there are only 35 species of extant planktonic foraminifera larger than 150 μm, we suggest that a fully automated characterization of this assemblage is attainable. This is the first step toward the realization of a foram picking robot.

Identification of Jets Containing $b$-Hadrons with Recurrent Neural Networks at the ATLAS Experiment

CERN Document Server

The ATLAS collaboration

2017-01-01

A novel $b$-jet identification algorithm is constructed with a Recurrent Neural Network (RNN) at the ATLAS experiment at the CERN Large Hadron Collider. The RNN based $b$-tagging algorithm processes charged particle tracks associated to jets without reliance on secondary vertex finding, and can augment existing secondary-vertex based taggers. In contrast to traditional impact-parameter-based $b$-tagging algorithms which assume that tracks associated to jets are independent from each other, the RNN based $b$-tagging algorithm can exploit the spatial and kinematic correlations between tracks which are initiated from the same $b$-hadrons. This new approach also accommodates an extended set of input variables. This note presents the expected performance of the RNN based $b$-tagging algorithm in simulated $t \\bar t$ events at $\\sqrt{s}=13$ TeV.

Emergency response preparedness analysis for radioactive materials transportation

International Nuclear Information System (INIS)

Parentela, E.M.; Burli, S.S.; Sathisan, S.K.; Vodrazka, W.C.

1994-01-01

This paper evaluates the emergency response capabilities of first responders, specifically fire services, within the state of Nevada. It addresses issues relating to the available emergency responders such as general capabilities, jurisdictions, and response times. Graphical displays of the response units and attribute tables were created using GIS ARC/INFO. These coverages, plus the existing Census Bureau TIGER Files and highway network for the state of Nevada, were utilized to determine approximate service areas of each response unit, population density served by each response unit, population density served by each response unit and the areas that can be served by a response unit for 3, 5, 10, and 30 minutes response times. Results of the analysis enabled identification of the critical areas along the proposed highway route corridor

Attitude towards technology, social media usage and grade-point average as predictors of global citizenship identification in Filipino University Students.

Science.gov (United States)

Lee, Romeo B; Baring, Rito; Maria, Madelene Sta; Reysen, Stephen

2017-06-01

We examine the influence of a positive attitude towards technology, number of social media network memberships and grade-point average (GPA) on global citizenship identification antecedents and outcomes. Students (N = 3628) at a university in the Philippines completed a survey assessing the above constructs. The results showed that attitude towards technology, number of social network site memberships and GPA-predicted global citizenship identification, and subsequent prosocial outcomes (e.g. intergroup helping, responsibility to act for the betterment of the world), through the perception that valued others prescribe a global citizen identity (normative environment) and perceived knowledge of the world and felt interconnectedness with others (global awareness). The results highlight the associations between technology and academic performance with a global identity and associated values. © 2015 International Union of Psychological Science.

MicroRadarNet: A network of weather micro radars for the identification of local high resolution precipitation patterns

Science.gov (United States)

Turso, S.; Paolella, S.; Gabella, M.; Perona, G.

2013-01-01

In this paper, MicroRadarNet, a novel micro radar network for continuous, unattended meteorological monitoring is presented. Key aspects and constraints are introduced. Specific design strategies are highlighted, leading to the technological implementations of this wireless, low-cost, low power consumption sensor network. Raw spatial and temporal datasets are processed on-board in real-time, featuring a consistent evaluation of the signals from the sensors and optimizing the data loads to be transmitted. Network servers perform the final post-elaboration steps on the data streams coming from each unit. Final network products are meteorological mappings of weather events, monitored with high spatial and temporal resolution, and lastly served to the end user through any Web browser. This networked approach is shown to imply a sensible reduction of the overall operational costs, including management and maintenance aspects, if compared to the traditional long range monitoring strategy. Adoption of the TITAN storm identification and nowcasting engine is also here evaluated for in-loop integration within the MicroRadarNet data processing chain. A brief description of the engine workflow is provided, to present preliminary feasibility results and performance estimates. The outcomes were not so predictable, taking into account relevant operational differences between a Western Alps micro radar scenario and the long range radar context in the Denver region of Colorado. Finally, positive results from a set of case studies are discussed, motivating further refinements and integration activities.

Cooperative adaptive responses in gene regulatory networks with many degrees of freedom.

Science.gov (United States)

Inoue, Masayo; Kaneko, Kunihiko

2013-04-01

Cells generally adapt to environmental changes by first exhibiting an immediate response and then gradually returning to their original state to achieve homeostasis. Although simple network motifs consisting of a few genes have been shown to exhibit such adaptive dynamics, they do not reflect the complexity of real cells, where the expression of a large number of genes activates or represses other genes, permitting adaptive behaviors. Here, we investigated the responses of gene regulatory networks containing many genes that have undergone numerical evolution to achieve high fitness due to the adaptive response of only a single target gene; this single target gene responds to changes in external inputs and later returns to basal levels. Despite setting a single target, most genes showed adaptive responses after evolution. Such adaptive dynamics were not due to common motifs within a few genes; even without such motifs, almost all genes showed adaptation, albeit sometimes partial adaptation, in the sense that expression levels did not always return to original levels. The genes split into two groups: genes in the first group exhibited an initial increase in expression and then returned to basal levels, while genes in the second group exhibited the opposite changes in expression. From this model, genes in the first group received positive input from other genes within the first group, but negative input from genes in the second group, and vice versa. Thus, the adaptation dynamics of genes from both groups were consolidated. This cooperative adaptive behavior was commonly observed if the number of genes involved was larger than the order of ten. These results have implications in the collective responses of gene expression networks in microarray measurements of yeast Saccharomyces cerevisiae and the significance to the biological homeostasis of systems with many components.

Implementation of a neural network for digital pulse shape analysis on a FPGA for on-line identification of heavy ions

Energy Technology Data Exchange (ETDEWEB)

Jimenez, R., E-mail: naharro@uhu.es [Departamento de Ingenieria Eletronica, Sistemas Informaticos y Automatica, Universidad de Huelva, 21071 Huelva (Spain); Sanchez-Raya, M.; Gomez-Galan, J.A. [Departamento de Ingenieria Eletronica, Sistemas Informaticos y Automatica, Universidad de Huelva, 21071 Huelva (Spain); Flores, J.L. [Departamento Ingenieria Electrica y Termica, Universidad de Huelva, 21071 Huelva (Spain); Duenas, J.A.; Martel, I. [Departamento de Fisica Aplicada, Universidad de Huelva, 21071 Huelva (Spain)

2012-05-11

Pulse shape analysis techniques for the identification of heavy ions produced in nuclear reactions have been recently proposed as an alternative to energy loss and time of flight methods. However this technique requires a large amount of memory for storing the shapes of charge and current signals. We have implemented a hardware solution for fast on-line processing of the signals producing the relevant information needed for particle identification. Since the pulse shape analysis can be formulated in terms of a pattern recognition problem, a neural network has been implemented in a FPGA device. The design concept has been tested using {sup 12,13}C ions produced in heavy ion reactions. The actual latency of the system is about 20 {mu}s when using a clock frequency of 50 MHz.

Enhancing Electrophoretic Display Lifetime: Thiol-Polybutadiene Evaporation Barrier Property Response to Network Microstructure

Energy Technology Data Exchange (ETDEWEB)

Cook, Caitlyn Christian [California State Polytechnic State Univ., San Luis Obispo, CA (United States)

2017-02-27

An evaporation barrier is required to enhance the lifetime of electrophoretic deposition (EPD) displays. As EPD functions on the basis of reversible deposition and resuspension of colloids suspended in a solvent, evaporation of the solvent ultimately leads to device failure. Incorporation of a thiol-polybutadiene elastomer into EPD displays enabled display lifetime surpassing six months in counting and catalyzed rigid display transition into a flexible package. Final flexible display transition to mass production compels an electronic-ink approach to encapsulate display suspension within an elastomer shell. Final thiol-polybutadiene photosensitive resin network microstructure was idealized to be dense, homogeneous, and expose an elastic response to deformation. Research at hand details an approach to understanding microstructural change within display elastomers. Polybutadiene-based resin properties are modified via polymer chain structure, with and without added aromatic urethane methacrylate difunctionality, and in measuring network response to variation in thiol and initiator concentration. Dynamic mechanical analysis results signify that cross-linked segments within a difunctionalized polybutadiene network were on average eight times more elastically active than that of linked segments within a non-functionalized polybutadiene network. Difunctionalized polybutadiene samples also showed a 2.5 times greater maximum elastic modulus than non-functionalized samples. Hybrid polymer composed of both polybutadiene chains encompassed TE-2000 stiffness and B-1000 elasticity for use in encapsulating display suspension. Later experiments measured kinetic and rheological response due to alteration in dithiol cross-linker chain length via real time Fourier transform infrared spectroscopy and real-time dynamic rheology. Distinct differences were discovered between dithiol resin systems, as maximum thiol conversion achieved in short and long chain length dithiols was 86% and

Identification of Plasma Parameters and Optimization of Magnetic Sensors in the Superconducting Steady-State Tokamak-1 Using Neural Networks

International Nuclear Information System (INIS)

Sengupta, A.; Ranjan, P.

2001-01-01

In this paper, we examine the possibility of using a multilayered feedforward neural network to extract tokamak plasma parameters from magnetic measurements as an improvement over the traditional methodology of function parametrization. It is also used to optimize the number and locations of the magnetic diagnostics designed for the tokamak. This work has been undertaken with the specific purpose of application of the neural network technique to the newly designed (and currently under fabrication) Superconducting Steady-State Tokamak-1 (SST-1). The magnetic measurements will be utilized to achieve real-time control of plasma shape, position, and some global profiles. A trained neural network is tested, and the results of parameter identification are compared with function parametrization. Both techniques appear well suited for the purpose, but a definite improvement with neural networks is observed. Although simulated measurements are used in this work, confidence regarding the network performance with actual experimental data is ensured by testing the network's noise tolerance with Gaussian noise of up to 10%. Finally, three possible methods of ranking the diagnostics in decreasing order of importance are suggested, and the neural network is used to optimize the number and locations of the magnetic sensors designed for SST-1. The results from the three methods are compared with one another and also with function parametrization. Magnetic probes within the plasma-facing side of the outboard limiter have been ranked high. Function parametrization and one of the neural network methods show a distinct tendency to favor the probes in the remote regions of the vacuum vessel, proving the importance of redundancy. Fault tolerance of the optimized network is tested. The results obtained should, in the long run, help in the decision regarding the final effective set of magnetic diagnostics to be used in SST-1 for reconstruction of the control parameters

Tactical Network Load Balancing in Multi-Gateway Wireless Sensor Networks

Science.gov (United States)

2013-12-01

communication technology ARPANET Advanced Research Projects Agency Network ASN autonomous sensor network CBR constant bit rate CDMA code...transmission energy NFC near field communication OV1 operational view xxii PA power amplifier RFC request for comment RFID radio frequency identification...fact that the integrated chip (IC) technology boom during the past 20+ years has miniaturized IC hardware while increasing computational capability

Joint Bayesian variable and graph selection for regression models with network-structured predictors

Science.gov (United States)

Peterson, C. B.; Stingo, F. C.; Vannucci, M.

2015-01-01

In this work, we develop a Bayesian approach to perform selection of predictors that are linked within a network. We achieve this by combining a sparse regression model relating the predictors to a response variable with a graphical model describing conditional dependencies among the predictors. The proposed method is well-suited for genomic applications since it allows the identification of pathways of functionally related genes or proteins which impact an outcome of interest. In contrast to previous approaches for network-guided variable selection, we infer the network among predictors using a Gaussian graphical model and do not assume that network information is available a priori. We demonstrate that our method outperforms existing methods in identifying network-structured predictors in simulation settings, and illustrate our proposed model with an application to inference of proteins relevant to glioblastoma survival. PMID:26514925

Optimizing the Performance of Radionuclide Identification Software in the Hunt for Nuclear Security Threats

Energy Technology Data Exchange (ETDEWEB)

Fotion, Katherine A. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)

2016-08-18

The Radionuclide Analysis Kit (RNAK), my team’s most recent nuclide identification software, is entering the testing phase. A question arises: will removing rare nuclides from the software’s library improve its overall performance? An affirmative response indicates fundamental errors in the software’s framework, while a negative response confirms the effectiveness of the software’s key machine learning algorithms. After thorough testing, I found that the performance of RNAK cannot be improved with the library choice effect, thus verifying the effectiveness of RNAK’s algorithms—multiple linear regression, Bayesian network using the Viterbi algorithm, and branch and bound search.

[The Identification of the Origin of Chinese Wolfberry Based on Infrared Spectral Technology and the Artificial Neural Network].

Science.gov (United States)

Li, Zhong; Liu, Ming-de; Ji, Shou-xiang

2016-03-01

combined with the artificial neural networks is proved to be a reliable and new method for the identification of the original place of Traditional Chinese Medicine.

A novel hybrid method of beta-turn identification in protein using binary logistic regression and neural network.

Science.gov (United States)

Asghari, Mehdi Poursheikhali; Hayatshahi, Sayyed Hamed Sadat; Abdolmaleki, Parviz

2012-01-01

From both the structural and functional points of view, β-turns play important biological roles in proteins. In the present study, a novel two-stage hybrid procedure has been developed to identify β-turns in proteins. Binary logistic regression was initially used for the first time to select significant sequence parameters in identification of β-turns due to a re-substitution test procedure. Sequence parameters were consisted of 80 amino acid positional occurrences and 20 amino acid percentages in sequence. Among these parameters, the most significant ones which were selected by binary logistic regression model, were percentages of Gly, Ser and the occurrence of Asn in position i+2, respectively, in sequence. These significant parameters have the highest effect on the constitution of a β-turn sequence. A neural network model was then constructed and fed by the parameters selected by binary logistic regression to build a hybrid predictor. The networks have been trained and tested on a non-homologous dataset of 565 protein chains. With applying a nine fold cross-validation test on the dataset, the network reached an overall accuracy (Qtotal) of 74, which is comparable with results of the other β-turn prediction methods. In conclusion, this study proves that the parameter selection ability of binary logistic regression together with the prediction capability of neural networks lead to the development of more precise models for identifying β-turns in proteins.

An improved wavelet-Galerkin method for dynamic response reconstruction and parameter identification of shear-type frames

Science.gov (United States)

Bu, Haifeng; Wang, Dansheng; Zhou, Pin; Zhu, Hongping

2018-04-01

An improved wavelet-Galerkin (IWG) method based on the Daubechies wavelet is proposed for reconstructing the dynamic responses of shear structures. The proposed method flexibly manages wavelet resolution level according to excitation, thereby avoiding the weakness of the wavelet-Galerkin multiresolution analysis (WGMA) method in terms of resolution and the requirement of external excitation. IWG is implemented by this work in certain case studies, involving single- and n-degree-of-freedom frame structures subjected to a determined discrete excitation. Results demonstrate that IWG performs better than WGMA in terms of accuracy and computation efficiency. Furthermore, a new method for parameter identification based on IWG and an optimization algorithm are also developed for shear frame structures, and a simultaneous identification of structural parameters and excitation is implemented. Numerical results demonstrate that the proposed identification method is effective for shear frame structures.

Identification of input variables for feature based artificial neural networks-saccade detection in EOG recordings.

Science.gov (United States)

Tigges, P; Kathmann, N; Engel, R R

1997-07-01

Though artificial neural networks (ANN) are excellent tools for pattern recognition problems when signal to noise ratio is low, the identification of decision relevant features for ANN input data is still a crucial issue. The experience of the ANN designer and the existing knowledge and understanding of the problem seem to be the only links for a specific construction. In the present study a backpropagation ANN based on modified raw data inputs showed encouraging results. Investigating the specific influences of prototypical input patterns on a specially designed ANN led to a new sparse and efficient input data presentation. This data coding obtained by a semiautomatic procedure combining existing expert knowledge and the internal representation structures of the raw data based ANN yielded a list of feature vectors, each representing the relevant information for saccade identification. The feature based ANN produced a reduction of the error rate of nearly 40% compared with the raw data ANN. An overall correct classification of 92% of so far unknown data was realized. The proposed method of extracting internal ANN knowledge for the production of a better input data representation is not restricted to EOG recordings, and could be used in various fields of signal analysis.

The construction of corporate social responsibility in network societies: A communication view

NARCIS (Netherlands)

Schultz, F.; Castello, I.; Morsing, M.

2013-01-01

The paper introduces the communication view on Corporate Social Responsibility (CSR), which regards CSR as communicatively constructed in dynamic interaction processes in today's networked societies. Building on the idea that communication constitutes organizations we discuss the potentially

Star identification methods, techniques and algorithms

CERN Document Server

Zhang, Guangjun

2017-01-01

This book summarizes the research advances in star identification that the author’s team has made over the past 10 years, systematically introducing the principles of star identification, general methods, key techniques and practicable algorithms. It also offers examples of hardware implementation and performance evaluation for the star identification algorithms. Star identification is the key step for celestial navigation and greatly improves the performance of star sensors, and as such the book include the fundamentals of star sensors and celestial navigation, the processing of the star catalog and star images, star identification using modified triangle algorithms, star identification using star patterns and using neural networks, rapid star tracking using star matching between adjacent frames, as well as implementation hardware and using performance tests for star identification. It is not only valuable as a reference book for star sensor designers and researchers working in pattern recognition and othe...

A core filamentation response network in Candida albicans is restricted to eight genes.

Directory of Open Access Journals (Sweden)

Ronny Martin

Full Text Available Although morphological plasticity is a central virulence trait of Candida albicans, the number of filament-associated genes and the interplay of mechanisms regulating their expression remain unknown. By correlation-based network modeling of the transcriptional response to different defined external stimuli for morphogenesis we identified a set of eight genes with highly correlated expression patterns, forming a core filamentation response. This group of genes included ALS3, ECE1, HGT2, HWP1, IHD1 and RBT1 which are known or supposed to encode for cell- wall associated proteins as well as the Rac1 guanine nucleotide exchange factor encoding gene DCK1 and the unknown function open reading frame orf19.2457. The validity of network modeling was confirmed using a dataset of advanced complexity that describes the transcriptional response of C. albicans during epithelial invasion as well as comparing our results with other previously published transcriptome studies. Although the set of core filamentation response genes was quite small, several transcriptional regulators are involved in the control of their expression, depending on the environmental condition.

Regularities in eyewitness identification.

Science.gov (United States)

Clark, Steven E; Howell, Ryan T; Davey, Sherrie L

2008-06-01

What do eyewitness identification experiments typically show? We address this question through a meta-analysis of 94 comparisons between target-present and target-absent lineups. The analyses showed that: (a) correct identifications and correct-nonidentifications were uncorrelated, (b) suspect identifications were more diagnostic with respect to the suspect's guilt or innocence than any other response, (c) nonidentifications were diagnostic of the suspect's innocence, (d) the diagnosticity of foil identifications depended on lineup composition, and (e) don't know responses were nondiagnostic with respect to guilt or innocence. Results of diagnosticity analyses for simultaneous and sequential lineups varied for full-sample versus direct-comparison analyses. Diagnosticity patterns also varied as a function of lineup composition. Theoretical, forensic, and legal implications are discussed.

Identification, Response, and Referral of Suicidal Youth Following Applied Suicide Intervention Skills Training.

Science.gov (United States)

Ewell Foster, Cynthia J; Burnside, Amanda N; Smith, Patricia K; Kramer, Anne C; Wills, Allie; A King, Cheryl

2017-06-01

Gatekeeper training is a public health approach to suicide prevention that encourages community members to identify those at risk for suicide, respond appropriately, and refer for clinical services. Despite widespread use, few studies have examined whether training results in behavior change in participants. This study employed a naturalistic pre-post design to follow 434 participants in Applied Suicide Intervention Skills Training, finding small but significant increases in self-reported identification of at-risk youth, some helpful responses to youth, and numbers of youth referred to treatment from pre-test to 6- to 9-month follow-up. Changes in active listening and helping behaviors meant to support treatment referrals (such as convincing a youth to seek treatment) were not observed over time. Additional analyses explored predictors of self-reported skill utilization including identification as a "natural helper" and attitudes about suicide prevention. © 2016 The American Association of Suicidology.

Towards Integrated Marmara Strong Motion Network

Science.gov (United States)

Durukal, E.; Erdik, M.; Safak, E.; Ansal, A.; Ozel, O.; Alcik, H.; Mert, A.; Kafadar, N.; Korkmaz, A.; Kurtulus, A.

2009-04-01

Array (72 ch. dense accelerometric array to be installed in 2010) - Gemlik Array (a dense basin array of 8 stations, to be installed in 2010) The objectives of these systems and networks are: (1) to produce rapid earthquake intensity, damage and loss assessment information after an earthquake (in the case of IERREWS), (2) to monitor conditions of structural systems, (3) to develop real-time data processing, analysis, and damage detection and location tools (in the case of structural networks) after an extreme event, (4) to assess spatial properties of strong ground motion and ground strain, and to characterise basin response (in the case of special arrays), (5) to investigate site response and wave propagation (in the case of vertical array). Ground motion data obtained from these strong motion networks have and are being used for investigations of attenuation, spatial variation (coherence), simulation benchmarking, source modeling, site response, seismic microzonation, system identification and structural model verification and structural health control. In addition to the systems and networks outlined above there are two temporary networks: KIMNET - a dense urban noise and microtremor network consisting of 50 broadband stations expected to be operational in mid 2009, and SOSEWIN - a 20-station, self-organizing structural integrated array at Ataköy in Istanbul.

Neural Network Substorm Identification: Enabling TREx Sensor Web Modes

Science.gov (United States)

Chaddock, D.; Spanswick, E.; Arnason, K. M.; Donovan, E.; Liang, J.; Ahmad, S.; Jackel, B. J.

2017-12-01

Transition Region Explorer (TREx) is a ground-based sensor web of optical and radio instruments that is presently being deployed across central Canada. The project consists of an array of co-located blue-line, full-colour, and near-infrared all-sky imagers, imaging riometers, proton aurora spectrographs, and GNSS systems. A key goal of the TREx project is to create the world's first (artificial) intelligent sensor web for remote sensing space weather. The sensor web will autonomously control and coordinate instrument operations in real-time. To accomplish this, we will use real-time in-line analytics of TREx and other data to dynamically switch between operational modes. An operating mode could be, for example, to have a blue-line imager gather data at a one or two orders of magnitude higher cadence than it operates for its `baseline' mode. The software decision to increase the imaging cadence would be in response to an anticipated increase in auroral activity or other programmatic requirements. Our first test for TREx's sensor web technologies is to develop the capacity to autonomously alter the TREx operating mode prior to a substorm expansion phase onset. In this paper, we present our neural network analysis of historical optical and riometer data and our ability to predict an optical onset. We explore the preliminary insights into using a neural network to pick out trends and features which it deems are similar among substorms.

Network Analysis Reveals a Common Host–Pathogen Interaction Pattern in Arabidopsis Immune Responses

Directory of Open Access Journals (Sweden)

Hong Li

2017-05-01

Full Text Available Many plant pathogens secrete virulence effectors into host cells to target important proteins in host cellular network. However, the dynamic interactions between effectors and host cellular network have not been fully understood. Here, an integrative network analysis was conducted by combining Arabidopsis thaliana protein–protein interaction network, known targets of Pseudomonas syringae and Hyaloperonospora arabidopsidis effectors, and gene expression profiles in the immune response. In particular, we focused on the characteristic network topology of the effector targets and differentially expressed genes (DEGs. We found that effectors tended to manipulate key network positions with higher betweenness centrality. The effector targets, especially those that are common targets of an individual effector, tended to be clustered together in the network. Moreover, the distances between the effector targets and DEGs increased over time during infection. In line with this observation, pathogen-susceptible mutants tended to have more DEGs surrounding the effector targets compared with resistant mutants. Our results suggest a common plant–pathogen interaction pattern at the cellular network level, where pathogens employ potent local impact mode to interfere with key positions in the host network, and plant organizes an in-depth defense by sequentially activating genes distal to the effector targets.

System Identification, Prediction, Simulation and Control with Neural Networks

DEFF Research Database (Denmark)

Sørensen, O.

1997-01-01

a Gauss-Newton search direction is applied. 3) Amongst numerous model types, often met in control applications, only the Non-linear ARMAX (NARMAX) model, representing input/output description, is examined. A simulated example confirms that a neural network has the potential to perform excellent System......The intention of this paper is to make a systematic examination of the possibilities of applying neural networks in those technical areas, which are familiar to a control engineer. In other words, the potential of neural networks in control applications is given higher priority than a detailed...... study of the networks themselves. With this end in view the following restrictions have been made: 1) Amongst numerous neural network structures, only the Multi Layer Perceptron (a feed-forward network) is applied. 2) Amongst numerous training algorithms, only the Recursive Prediction Error Method using...

A Low Delay and Fast Converging Improved Proportionate Algorithm for Sparse System Identification

Directory of Open Access Journals (Sweden)

Benesty Jacob

2007-01-01

Full Text Available A sparse system identification algorithm for network echo cancellation is presented. This new approach exploits both the fast convergence of the improved proportionate normalized least mean square (IPNLMS algorithm and the efficient implementation of the multidelay adaptive filtering (MDF algorithm inheriting the beneficial properties of both. The proposed IPMDF algorithm is evaluated using impulse responses with various degrees of sparseness. Simulation results are also presented for both speech and white Gaussian noise input sequences. It has been shown that the IPMDF algorithm outperforms the MDF and IPNLMS algorithms for both sparse and dispersive echo path impulse responses. Computational complexity of the proposed algorithm is also discussed.

Grafting of Interpenetrating Networks of Two Stimuli-responsive Polymers onto PP

International Nuclear Information System (INIS)

Ruiz, J. C.

2006-01-01

In this work a new strategy was used to prepare interpenetrating polymer networks (IPNs) of two 'stimuli-responsive' polymers: a thermosensitive poly N-isopropylacrylamide (PNIPAAm) and pH sensitive poly acrylic acid (PAAc), the last grafted onto PP films. IPNs are a combination of two or more polymers in network form, which are mixed together (not chemically but physically), with al least one such polymer polymerized and/or crosslinked in the immediate presence of the other(s). The 'stimuli-responsive' polymers, also called 'smart' polymers, exhibit relatively large and sharp physical or chemical changes in response to small physical or chemical stimuli. These polymers are being used as hydrogels or copolymers for technical applications in chemical and mechanical engineering systems such as mass separation, chemical valves, temperature or pH indicators, biomedical and drug delivery systems. For these applications a rapid response and good mechanical properties are necessary. Formerly when PNIPAAm and PAAc were chemically combined their sensitivity was often altered or eliminated and their copolymer had poor mechanical properties. Attempts to solve this problem by creating IPN's with a reduced gel size or by using a macro-porous structure were successful in preserving sensitivity but failed to produce adequate mechanical properties. The object of this paper is to improve the past results of using a binary graft of PNIPAAm and PAAc onto poly(tetrafluoroethylene) PTFE. Poly acrylic acid was grafted onto polypropylene films (with good mechanical properties) by gamma radiation in air (pre-irradiation method), then these grafts were crosslinked using any of the next two methods: The first one, the grafted film in water and argon atmosphere by gamma radiation; and the second one, in the same conditions, but adding a crosslinking agent N, N'-methylenebisacrylamide (MBAAm). The second network was carried out in situ, in the cross-linked PAAc grafted onto PP films, by

Identification and discrimination of oral asaccharolytic Eubacterium spp. by pyrolysis mass spectrometry and artificial neural networks.

Science.gov (United States)

Goodacre, R; Hiom, S J; Cheeseman, S L; Murdoch, D; Weightman, A J; Wade, W G

1996-02-01

Curie-point pyrolysis mass spectra were obtained from 29 oral asaccharolytic Eubacterium strains and 6 abscess isolates previously identified as Peptostreptococcus heliotrinreducens. Pyrolysis mass spectrometry (PyMS) with cluster analysis was able to clarify the taxonomic position of this group of organisms. Artificial neural networks (ANNS) were then trained by supervised learning (with the back-propagation algorithm) to recognize the strains from their pyrolysis mass spectra; all Eubacterium strains were correctly identified, and the abscess isolates were identified as un-named Eubacterium taxon C2 and were distinct from the type strain of P. heliotrinreducens. These results demonstrate that the combination of PyMS and ANNs provides a rapid and accurate identification technique.

Development of a Real-Time Radiological Area Monitoring Network for Emergency Response at Lawrence Livermore National Laboratory

International Nuclear Information System (INIS)

Bertoldo, N; Hunter, S; Fertig, R; Laguna, G; MacQueen, D

2004-01-01

A real-time radiological sensor network for emergency response was developed and deployed at the Lawrence Livermore National Laboratory (LLNL). The Real-Time Radiological Area Monitoring (RTRAM) network is comprised of 16 Geiger-Mueller (GM) sensors positioned on the LLNL Livermore site perimeter to continuously monitor for a radiological condition resulting from a terrorist threat to site security and the health and safety of LLNL personnel. The RTRAM network sensor locations coincide with wind sector directions to provide thorough coverage of the one square mile site. These loW--power sensors are supported by a central command center (CCC) and transmit measurement data back to the CCC computer through the LLNL telecommunications infrastructure. Alarm conditions are identified by comparing current data to predetermined threshold parameters and are validated by comparison with plausible dispersion modeling scenarios and prevailing meteorological conditions. Emergency response personnel are notified of alarm conditions by automatic radio and computer based notifications. A secure intranet provides emergency response personnel with current condition assessment data that enable them to direct field response efforts remotely. The RTRAM network has proven to be a reliable system since initial deployment in August 2001 and maintains stability during inclement weather conditions

Effects of corporate social responsibility on brand reputation and brand identification with children

OpenAIRE

Pais, Madalena Sofia Sarmento de Figueiroa-Rêgo

2012-01-01

A Work Project, presented as part of the requirements for the Award of a Masters Degree in Management from the NOVA – School of Business and Economics This study aims to understand children‟s perceptions of Corporate Social Responsibility (CSR) initiatives and its effect on the brand, namely Reputation and Identification. Moreover, it analyzes if the use of Cartoons helps to increase these effects. Differences among gender, age and social class, will also be considered. 292 children fro...

Handwritten dynamics assessment through convolutional neural networks: An application to Parkinson's disease identification.

Science.gov (United States)

Pereira, Clayton R; Pereira, Danilo R; Rosa, Gustavo H; Albuquerque, Victor H C; Weber, Silke A T; Hook, Christian; Papa, João P

2018-04-16

Parkinson's disease (PD) is considered a degenerative disorder that affects the motor system, which may cause tremors, micrography, and the freezing of gait. Although PD is related to the lack of dopamine, the triggering process of its development is not fully understood yet. In this work, we introduce convolutional neural networks to learn features from images produced by handwritten dynamics, which capture different information during the individual's assessment. Additionally, we make available a dataset composed of images and signal-based data to foster the research related to computer-aided PD diagnosis. The proposed approach was compared against raw data and texture-based descriptors, showing suitable results, mainly in the context of early stage detection, with results nearly to 95%. The analysis of handwritten dynamics using deep learning techniques showed to be useful for automatic Parkinson's disease identification, as well as it can outperform handcrafted features. Copyright © 2018 Elsevier B.V. All rights reserved.

Proteomic identification of early salicylate- and flg22-responsive redox-sensitive proteins in Arabidopsis

KAUST Repository

Liu, Peng

2015-02-27

Accumulation of reactive oxygen species (ROS) is one of the early defense responses against pathogen infection in plants. The mechanism about the initial and direct regulation of the defense signaling pathway by ROS remains elusive. Perturbation of cellular redox homeostasis by ROS is believed to alter functions of redox-sensitive proteins through their oxidative modifications. Here we report an OxiTRAQ-based proteomic study in identifying proteins whose cysteines underwent oxidative modifications in Arabidopsis cells during the early response to salicylate or flg22, two defense pathway elicitors that are known to disturb cellular redox homeostasis. Among the salicylate- and/or flg22-responsive redox-sensitive proteins are those involved in transcriptional regulation, chromatin remodeling, RNA processing, post-translational modifications, and nucleocytoplasmic shuttling. The identification of the salicylate-/flg22-responsive redox-sensitive proteins provides a foundation from which further study can be conducted toward understanding biological significance of their oxidative modifications during the plant defense response.

Equal opportunity for low-degree network nodes: a PageRank-based method for protein target identification in metabolic graphs.

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Dániel Bánky

Full Text Available Biological network data, such as metabolic-, signaling- or physical interaction graphs of proteins are increasingly available in public repositories for important species. Tools for the quantitative analysis of these networks are being developed today. Protein network-based drug target identification methods usually return protein hubs with large degrees in the networks as potentially important targets. Some known, important protein targets, however, are not hubs at all, and perturbing protein hubs in these networks may have several unwanted physiological effects, due to their interaction with numerous partners. Here, we show a novel method applicable in networks with directed edges (such as metabolic networks that compensates for the low degree (non-hub vertices in the network, and identifies important nodes, regardless of their hub properties. Our method computes the PageRank for the nodes of the network, and divides the PageRank by the in-degree (i.e., the number of incoming edges of the node. This quotient is the same in all nodes in an undirected graph (even for large- and low-degree nodes, that is, for hubs and non-hubs as well, but may differ significantly from node to node in directed graphs. We suggest to assign importance to non-hub nodes with large PageRank/in-degree quotient. Consequently, our method gives high scores to nodes with large PageRank, relative to their degrees: therefore non-hub important nodes can easily be identified in large networks. We demonstrate that these relatively high PageRank scores have biological relevance: the method correctly finds numerous already validated drug targets in distinct organisms (Mycobacterium tuberculosis, Plasmodium falciparum and MRSA Staphylococcus aureus, and consequently, it may suggest new possible protein targets as well. Additionally, our scoring method was not chosen arbitrarily: its value for all nodes of all undirected graphs is constant; therefore its high value captures

Equal opportunity for low-degree network nodes: a PageRank-based method for protein target identification in metabolic graphs.

Science.gov (United States)

Bánky, Dániel; Iván, Gábor; Grolmusz, Vince

2013-01-01

Biological network data, such as metabolic-, signaling- or physical interaction graphs of proteins are increasingly available in public repositories for important species. Tools for the quantitative analysis of these networks are being developed today. Protein network-based drug target identification methods usually return protein hubs with large degrees in the networks as potentially important targets. Some known, important protein targets, however, are not hubs at all, and perturbing protein hubs in these networks may have several unwanted physiological effects, due to their interaction with numerous partners. Here, we show a novel method applicable in networks with directed edges (such as metabolic networks) that compensates for the low degree (non-hub) vertices in the network, and identifies important nodes, regardless of their hub properties. Our method computes the PageRank for the nodes of the network, and divides the PageRank by the in-degree (i.e., the number of incoming edges) of the node. This quotient is the same in all nodes in an undirected graph (even for large- and low-degree nodes, that is, for hubs and non-hubs as well), but may differ significantly from node to node in directed graphs. We suggest to assign importance to non-hub nodes with large PageRank/in-degree quotient. Consequently, our method gives high scores to nodes with large PageRank, relative to their degrees: therefore non-hub important nodes can easily be identified in large networks. We demonstrate that these relatively high PageRank scores have biological relevance: the method correctly finds numerous already validated drug targets in distinct organisms (Mycobacterium tuberculosis, Plasmodium falciparum and MRSA Staphylococcus aureus), and consequently, it may suggest new possible protein targets as well. Additionally, our scoring method was not chosen arbitrarily: its value for all nodes of all undirected graphs is constant; therefore its high value captures importance in the

Sensory and cross-network contributions to response inhibition in patients with schizophrenia

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Matthew J. Hoptman

Full Text Available Patients with schizophrenia show response inhibition deficits equal to or greater than those seen in impulse-control disorders, and these deficits contribute to poor outcome. However, little is known about the circuit abnormalities underlying this impairment. To address this, we examined stop signal task performance in 21 patients with schizophrenia and 21 healthy controls using event related potential (ERP and resting state functional connectivity. Patients showed prolonged stop signal reaction time (SSRT and reduced N1, N2, and P3 amplitudes compared to controls. Across groups, P3 amplitudes were maximal after SSRT (i.e., after the time associated with the decision to stop occurred, suggesting that this component indexed response monitoring. Multiple regression analyses showed that longer SSRTs were independently related to 1 patient status, 2 reduced N1 amplitude on successful stop trials and 3 reduced anticorrelated resting state functional connectivity between visual and frontoparietal cortical networks. This study used a combined multimodal imaging approach to better understand the network abnormalities that underlie response inhibition in schizophrenia. It is the first of its kind to specifically assess the brain's resting state functional architecture in combination with behavioral and ERP methods to investigate response inhibition in schizophrenia. Keywords: EEG, Stop signal task, Impulsivity, Schizophrenia, Resting state functional connectivity

Personal Identification by Keystroke Dynamics in Japanese Free Text Typing

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Samura, Toshiharu; Nishimura, Haruhiko

Biometrics is classified into verification and identification. Many researchers on the keystroke dynamics have treated the verification of a fixed short password which is used for the user login. In this research, we pay attention to the identification and investigate several characteristics of the keystroke dynamics in Japanese free text typing. We developed Web-based typing software in order to collect the keystroke data on the Local Area Network and performed experiments on a total of 112 subjects, from which three groups of typing level, the beginner's level and above, the normal level and above and the middle level and above were constructed. Based on the identification methods by the weighted Euclid distance and the neural network for the extracted feature indexes in Japanese texts, we evaluated identification performances for the three groups. As a result, high accuracy of personal identification was confirmed in both methods, in proportion to the typing level of the group.

Functional brain networks in schizophrenia: a review

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Vince D Calhoun

2009-08-01

Full Text Available Functional magnetic resonance imaging (fMRI has become a major technique for studying cognitive function and its disruption in mental illness, including schizophrenia. The major proportion of imaging studies focused primarily upon identifying regions which hemodynamic response amplitudes covary with particular stimuli and differentiate between patient and control groups. In addition to such amplitude based comparisons, one can estimate temporal correlations and compute maps of functional connectivity between regions which include the variance associated with event related responses as well as intrinsic fluctuations of hemodynamic activity. Functional connectivity maps can be computed by correlating all voxels with a seed region when a spatial prior is available. An alternative are multivariate decompositions such as independent component analysis (ICA which extract multiple components, each of which is a spatially distinct map of voxels with a common time course. Recent work has shown that these networks are pervasive in relaxed resting and during task performance and hence provide robust measures of intact and disturbed brain activity. This in turn bears the prospect of yielding biomarkers for schizophrenia, which can be described both in terms of disrupted local processing as well as altered global connectivity between large scale networks. In this review we will summarize functional connectivity measures with a focus upon work with ICA and discuss the meaning of intrinsic fluctuations. In addition, examples of how brain networks have been used for classification of disease will be shown. We present work with functional network connectivity, an approach that enables the evaluation of the interplay between multiple networks and how they are affected in disease. We conclude by discussing new variants of ICA for extracting maximally group discriminative networks from data. In summary, it is clear that identification of brain networks and their

In silico identification of miRNAs and their target genes and analysis of gene co-expression network in saffron (Crocus sativus L.) stigma

Science.gov (United States)

Zinati, Zahra; Shamloo-Dashtpagerdi, Roohollah; Behpouri, Ali

2016-01-01

As an aromatic and colorful plant of substantive taste, saffron (Crocus sativus L.) owes such properties of matter to growing class of the secondary metabolites derived from the carotenoids, apocarotenoids. Regarding the critical role of microRNAs in secondary metabolic synthesis and the limited number of identified miRNAs in C. sativus, on the other hand, one may see the point how the characterization of miRNAs along with the corresponding target genes in C. sativus might expand our perspectives on the roles of miRNAs in carotenoid/apocarotenoid biosynthetic pathway. A computational analysis was used to identify miRNAs and their targets using EST (Expressed Sequence Tag) library from mature saffron stigmas. Then, a gene co- expression network was constructed to identify genes which are potentially involved in carotenoid/apocarotenoid biosynthetic pathways. EST analysis led to the identification of two putative miRNAs (miR414 and miR837-5p) along with the corresponding stem- looped precursors. To our knowledge, this is the first report on miR414 and miR837-5p in C. sativus. Co-expression network analysis indicated that miR414 and miR837-5p may play roles in C. sativus metabolic pathways and led to identification of candidate genes including six transcription factors and one protein kinase probably involved in carotenoid/apocarotenoid biosynthetic pathway. Presence of transcription factors, miRNAs and protein kinase in the network indicated multiple layers of regulation in saffron stigma. The candidate genes from this study may help unraveling regulatory networks underlying the carotenoid/apocarotenoid biosynthesis in saffron and designing metabolic engineering for enhanced secondary metabolites. PMID:28261627

Atomoxetine restores the response inhibition network in Parkinson's disease.

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Rae, Charlotte L; Nombela, Cristina; Rodríguez, Patricia Vázquez; Ye, Zheng; Hughes, Laura E; Jones, P Simon; Ham, Timothy; Rittman, Timothy; Coyle-Gilchrist, Ian; Regenthal, Ralf; Sahakian, Barbara J; Barker, Roger A; Robbins, Trevor W; Rowe, James B

2016-08-01

Parkinson's disease impairs the inhibition of responses, and whilst impulsivity is mild for some patients, severe impulse control disorders affect ∼10% of cases. Based on preclinical models we proposed that noradrenergic denervation contributes to the impairment of response inhibition, via changes in the prefrontal cortex and its subcortical connections. Previous work in Parkinson's disease found that the selective noradrenaline reuptake inhibitor atomoxetine could improve response inhibition, gambling decisions and reflection impulsivity. Here we tested the hypotheses that atomoxetine can restore functional brain networks for response inhibition in Parkinson's disease, and that both structural and functional connectivity determine the behavioural effect. In a randomized, double-blind placebo-controlled crossover study, 19 patients with mild-to-moderate idiopathic Parkinson's disease underwent functional magnetic resonance imaging during a stop-signal task, while on their usual dopaminergic therapy. Patients received 40 mg atomoxetine or placebo, orally. This regimen anticipates that noradrenergic therapies for behavioural symptoms would be adjunctive to, not a replacement for, dopaminergic therapy. Twenty matched control participants provided normative data. Arterial spin labelling identified no significant changes in regional perfusion. We assessed functional interactions between key frontal and subcortical brain areas for response inhibition, by comparing 20 dynamic causal models of the response inhibition network, inverted to the functional magnetic resonance imaging data and compared using random effects model selection. We found that the normal interaction between pre-supplementary motor cortex and the inferior frontal gyrus was absent in Parkinson's disease patients on placebo (despite dopaminergic therapy), but this connection was restored by atomoxetine. The behavioural change in response inhibition (improvement indicated by reduced stop-signal reaction

Classification of ion mobility spectra by functional groups using neural networks

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Bell, S.; Nazarov, E.; Wang, Y. F.; Eiceman, G. A.

1999-01-01

Neural networks were trained using whole ion mobility spectra from a standardized database of 3137 spectra for 204 chemicals at various concentrations. Performance of the network was measured by the success of classification into ten chemical classes. Eleven stages for evaluation of spectra and of spectral pre-processing were employed and minimums established for response thresholds and spectral purity. After optimization of the database, network, and pre-processing routines, the fraction of successful classifications by functional group was 0.91 throughout a range of concentrations. Network classification relied on a combination of features, including drift times, number of peaks, relative intensities, and other factors apparently including peak shape. The network was opportunistic, exploiting different features within different chemical classes. Application of neural networks in a two-tier design where chemicals were first identified by class and then individually eliminated all but one false positive out of 161 test spectra. These findings establish that ion mobility spectra, even with low resolution instrumentation, contain sufficient detail to permit the development of automated identification systems.

Acoustic stimulation can induce a selective neural network response mediated by piezoelectric nanoparticles

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Rojas, Camilo; Tedesco, Mariateresa; Massobrio, Paolo; Marino, Attilio; Ciofani, Gianni; Martinoia, Sergio; Raiteri, Roberto

2018-06-01

Objective. We aim to develop a novel non-invasive or minimally invasive method for neural stimulation to be applied in the study and treatment of brain (dys)functions and neurological disorders. Approach. We investigate the electrophysiological response of in vitro neuronal networks when subjected to low-intensity pulsed acoustic stimulation, mediated by piezoelectric nanoparticles adsorbed on the neuronal membrane. Main results. We show that the presence of piezoelectric barium titanate nanoparticles induces, in a reproducible way, an increase in network activity when excited by stationary ultrasound waves in the MHz regime. Such a response can be fully recovered when switching the ultrasound pulse off, depending on the generated pressure field amplitude, whilst it is insensitive to the duration of the ultrasound pulse in the range 0.5 s–1.5 s. We demonstrate that the presence of piezoelectric nanoparticles is necessary, and when applying the same acoustic stimulation to neuronal cultures without nanoparticles or with non-piezoelectric nanoparticles with the same size distribution, no network response is observed. Significance. We believe that our results open up an extremely interesting approach when coupled with suitable functionalization strategies of the nanoparticles in order to address specific neurons and/or brain areas and applied in vivo, thus enabling remote, non-invasive, and highly selective modulation of the activity of neuronal subpopulations of the central nervous system of mammalians.

Frequency Response Function Based Damage Identification for Aerospace Structures

Science.gov (United States)

Oliver, Joseph Acton

Structural health monitoring technologies continue to be pursued for aerospace structures in the interests of increased safety and, when combined with health prognosis, efficiency in life-cycle management. The current dissertation develops and validates damage identification technology as a critical component for structural health monitoring of aerospace structures and, in particular, composite unmanned aerial vehicles. The primary innovation is a statistical least-squares damage identification algorithm based in concepts of parameter estimation and model update. The algorithm uses frequency response function based residual force vectors derived from distributed vibration measurements to update a structural finite element model through statistically weighted least-squares minimization producing location and quantification of the damage, estimation uncertainty, and an updated model. Advantages compared to other approaches include robust applicability to systems which are heavily damped, large, and noisy, with a relatively low number of distributed measurement points compared to the number of analytical degrees-of-freedom of an associated analytical structural model (e.g., modal finite element model). Motivation, research objectives, and a dissertation summary are discussed in Chapter 1 followed by a literature review in Chapter 2. Chapter 3 gives background theory and the damage identification algorithm derivation followed by a study of fundamental algorithm behavior on a two degree-of-freedom mass-spring system with generalized damping. Chapter 4 investigates the impact of noise then successfully proves the algorithm against competing methods using an analytical eight degree-of-freedom mass-spring system with non-proportional structural damping. Chapter 5 extends use of the algorithm to finite element models, including solutions for numerical issues, approaches for modeling damping approximately in reduced coordinates, and analytical validation using a composite

Adaptive-impulsive synchronization in drive-response networks of continuous systems and its application

International Nuclear Information System (INIS)

Sun Mei; Zeng Changyan; Tao Yangwei; Tian Lixin

2009-01-01

Based on the comparison theorem for the stability of impulsive control system, adaptive-impulsive synchronization in drive-response networks of continuous systems with time-delay and non-time-delay is investigated. And the continuous control input, the simple updated laws and a linear impulsive controller are proposed. Moreover, two numerical examples are presented to verify the effectiveness and correctness of the theorem, using the energy resource system and Lue's system as the nodes of the networks.

Real-Time Transportation Mode Identification Using Artificial Neural Networks Enhanced with Mode Availability Layers: A Case Study in Dubai

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Young-Ji Byon

2017-09-01

Full Text Available Traditionally, departments of transportation (DOTs have dispatched probe vehicles with dedicated vehicles and drivers for monitoring traffic conditions. Emerging assisted GPS (AGPS and accelerometer-equipped smartphones offer new sources of raw data that arise from voluntarily-traveling smartphone users provided that their modes of transportation can correctly be identified. By introducing additional raster map layers that indicate the availability of each mode, it is possible to enhance the accuracy of mode detection results. Even in its simplest form, an artificial neural network (ANN excels at pattern recognition with a relatively short processing timeframe once it is properly trained, which is suitable for real-time mode identification purposes. Dubai is one of the major cities in the Middle East and offers unique environments, such as a high density of extremely high-rise buildings that may introduce multi-path errors with GPS signals. This paper develops real-time mode identification ANNs enhanced with proposed mode availability geographic information system (GIS layers, firstly for a universal mode detection and, secondly for an auto mode detection for the particular intelligent transportation system (ITS application of traffic monitoring, and compares the results with existing approaches. It is found that ANN-based real-time mode identification, enhanced by mode availability GIS layers, significantly outperforms the existing methods.

Damage identification in beams by a response surface based technique

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Teidj S.

2014-01-01

Full Text Available In this work, identification of damage in uniform homogeneous metallic beams was considered through the propagation of non dispersive elastic torsional waves. The proposed damage detection procedure consisted of the following sequence. Giving a localized torque excitation, having the form of a short half-sine pulse, the first step was calculating the transient solution of the resulting torsional wave. This torque could be generated in practice by means of asymmetric laser irradiation of the beam surface. Then, a localized defect assumed to be characterized by an abrupt reduction of beam section area with a given height and extent was placed at a known location of the beam. Next, the response in terms of transverse section rotation rate was obtained for a point situated afterwards the defect, where the sensor was positioned. This last could utilize in practice the concept of laser vibrometry. A parametric study has been conducted after that by using a full factorial design of experiments table and numerical simulations based on a finite difference characteristic scheme. This has enabled the derivation of a response surface model that was shown to represent adequately the response of the system in terms of the following factors: defect extent and severity. The final step was performing the inverse problem solution in order to identify the defect characteristics by using measurement.

Time response prediction of Brazilian Nuclear Power Plant temperature sensors using neural networks

Energy Technology Data Exchange (ETDEWEB)

Santos, Roberto Carlos dos; Pereira, Iraci Martinez, E-mail: rcsantos@ipen.br [Instituto de Pesquisas Energeticas e Nucleares (IPEN/CNEN-SP), Sao Paulo, SP (Brazil)

2011-07-01

This work presents the results of the time constants values predicted from ANN using Angra I Brazilian nuclear power plant data. The signals obtained from LCSR loop current step response test sensors installed in the process presents noise end fluctuations that are inherent of operational conditions. Angra I nuclear power plant has 20 RTDs as part of the protection reactor system. The results were compared with those obtained from traditional way. Primary coolant RTDs (Resistance Temperature Detector) typically feed the plant's control and safety systems and must, therefore, be very accurate and have good dynamic performance. An in-situ test method called LCSR - loop current step response test was developed to measure remotely the response time of RTDs. In the LCSR method, the response time of the sensor is identified by means of the LCSR transformation that involves the dynamic response modal time constants determination using a nodal heat transfer model. For this reason, this calculation is not simple and requires specialized personnel. This work combines the two methodologies, Plunge test and LCSR test, using neural networks. With the use of neural networks it will not be necessary to use the LCSR transformation to determine sensor's time constant and this leads to more robust results. (author)

Time response prediction of Brazilian Nuclear Power Plant temperature sensors using neural networks

International Nuclear Information System (INIS)

Santos, Roberto Carlos dos; Pereira, Iraci Martinez

2011-01-01

This work presents the results of the time constants values predicted from ANN using Angra I Brazilian nuclear power plant data. The signals obtained from LCSR loop current step response test sensors installed in the process presents noise end fluctuations that are inherent of operational conditions. Angra I nuclear power plant has 20 RTDs as part of the protection reactor system. The results were compared with those obtained from traditional way. Primary coolant RTDs (Resistance Temperature Detector) typically feed the plant's control and safety systems and must, therefore, be very accurate and have good dynamic performance. An in-situ test method called LCSR - loop current step response test was developed to measure remotely the response time of RTDs. In the LCSR method, the response time of the sensor is identified by means of the LCSR transformation that involves the dynamic response modal time constants determination using a nodal heat transfer model. For this reason, this calculation is not simple and requires specialized personnel. This work combines the two methodologies, Plunge test and LCSR test, using neural networks. With the use of neural networks it will not be necessary to use the LCSR transformation to determine sensor's time constant and this leads to more robust results. (author)

Ontology Design of Influential People Identification Using Centrality

Science.gov (United States)

Maulana Awangga, Rolly; Yusril, Muhammad; Setyawan, Helmi

2018-04-01

Identifying influential people as a node in a graph theory commonly calculated by social network analysis. The social network data has the user as node and edge as relation forming a friend relation graph. This research is conducting different meaning of every nodes relation in the social network. Ontology was perfect match science to describe the social network data as conceptual and domain. Ontology gives essential relationship in a social network more than a current graph. Ontology proposed as a standard for knowledge representation for the semantic web by World Wide Web Consortium. The formal data representation use Resource Description Framework (RDF) and Web Ontology Language (OWL) which is strategic for Open Knowledge-Based website data. Ontology used in the semantic description for a relationship in the social network, it is open to developing semantic based relationship ontology by adding and modifying various and different relationship to have influential people as a conclusion. This research proposes a model using OWL and RDF for influential people identification in the social network. The study use degree centrality, between ness centrality, and closeness centrality measurement for data validation. As a conclusion, influential people identification in Facebook can use proposed Ontology model in the Group, Photos, Photo Tag, Friends, Events and Works data.

Activity in the fronto-parietal network indicates numerical inductive reasoning beyond calculation: An fMRI study combined with a cognitive model.

Science.gov (United States)

Liang, Peipeng; Jia, Xiuqin; Taatgen, Niels A; Borst, Jelmer P; Li, Kuncheng

2016-05-19

Numerical inductive reasoning refers to the process of identifying and extrapolating the rule involved in numeric materials. It is associated with calculation, and shares the common activation of the fronto-parietal regions with calculation, which suggests that numerical inductive reasoning may correspond to a general calculation process. However, compared with calculation, rule identification is critical and unique to reasoning. Previous studies have established the central role of the fronto-parietal network for relational integration during rule identification in numerical inductive reasoning. The current question of interest is whether numerical inductive reasoning exclusively corresponds to calculation or operates beyond calculation, and whether it is possible to distinguish between them based on the activity pattern in the fronto-parietal network. To directly address this issue, three types of problems were created: numerical inductive reasoning, calculation, and perceptual judgment. Our results showed that the fronto-parietal network was more active in numerical inductive reasoning which requires more exchanges between intermediate representations and long-term declarative knowledge during rule identification. These results survived even after controlling for the covariates of response time and error rate. A computational cognitive model was developed using the cognitive architecture ACT-R to account for the behavioral results and brain activity in the fronto-parietal network.

Dose response relationship in anti-stress gene regulatory networks.

Science.gov (United States)

Zhang, Qiang; Andersen, Melvin E

2007-03-02

To maintain a stable intracellular environment, cells utilize complex and specialized defense systems against a variety of external perturbations, such as electrophilic stress, heat shock, and hypoxia, etc. Irrespective of the type of stress, many adaptive mechanisms contributing to cellular homeostasis appear to operate through gene regulatory networks that are organized into negative feedback loops. In general, the degree of deviation of the controlled variables, such as electrophiles, misfolded proteins, and O2, is first detected by specialized sensor molecules, then the signal is transduced to specific transcription factors. Transcription factors can regulate the expression of a suite of anti-stress genes, many of which encode enzymes functioning to counteract the perturbed variables. The objective of this study was to explore, using control theory and computational approaches, the theoretical basis that underlies the steady-state dose response relationship between cellular stressors and intracellular biochemical species (controlled variables, transcription factors, and gene products) in these gene regulatory networks. Our work indicated that the shape of dose response curves (linear, superlinear, or sublinear) depends on changes in the specific values of local response coefficients (gains) distributed in the feedback loop. Multimerization of anti-stress enzymes and transcription factors into homodimers, homotrimers, or even higher-order multimers, play a significant role in maintaining robust homeostasis. Moreover, our simulation noted that dose response curves for the controlled variables can transition sequentially through four distinct phases as stressor level increases: initial superlinear with lesser control, superlinear more highly controlled, linear uncontrolled, and sublinear catastrophic. Each phase relies on specific gain-changing events that come into play as stressor level increases. The low-dose region is intrinsically nonlinear, and depending on

Dose response relationship in anti-stress gene regulatory networks.

Directory of Open Access Journals (Sweden)

Qiang Zhang

2007-03-01

Full Text Available To maintain a stable intracellular environment, cells utilize complex and specialized defense systems against a variety of external perturbations, such as electrophilic stress, heat shock, and hypoxia, etc. Irrespective of the type of stress, many adaptive mechanisms contributing to cellular homeostasis appear to operate through gene regulatory networks that are organized into negative feedback loops. In general, the degree of deviation of the controlled variables, such as electrophiles, misfolded proteins, and O2, is first detected by specialized sensor molecules, then the signal is transduced to specific transcription factors. Transcription factors can regulate the expression of a suite of anti-stress genes, many of which encode enzymes functioning to counteract the perturbed variables. The objective of this study was to explore, using control theory and computational approaches, the theoretical basis that underlies the steady-state dose response relationship between cellular stressors and intracellular biochemical species (controlled variables, transcription factors, and gene products in these gene regulatory networks. Our work indicated that the shape of dose response curves (linear, superlinear, or sublinear depends on changes in the specific values of local response coefficients (gains distributed in the feedback loop. Multimerization of anti-stress enzymes and transcription factors into homodimers, homotrimers, or even higher-order multimers, play a significant role in maintaining robust homeostasis. Moreover, our simulation noted that dose response curves for the controlled variables can transition sequentially through four distinct phases as stressor level increases: initial superlinear with lesser control, superlinear more highly controlled, linear uncontrolled, and sublinear catastrophic. Each phase relies on specific gain-changing events that come into play as stressor level increases. The low-dose region is intrinsically nonlinear

Virtualized Network Control (VNC)

Energy Technology Data Exchange (ETDEWEB)

Lehman, Thomas [Univ. of Southern California, Los Angeles, CA (United States); Guok, Chin [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Ghani, Nasir [Univ. of New Mexico, Albuquerque, NM (United States)

2013-01-31

The focus of this project was on the development of a "Network Service Plane" as an abstraction model for the control and provisioning of multi-layer networks. The primary motivation for this work were the requirements of next generation networked applications which will need to access advanced networking as a first class resource at the same level as compute and storage resources. A new class of "Intelligent Network Services" were defined in order to facilitate the integration of advanced network services into application specific workflows. This new class of network services are intended to enable real-time interaction between the application co-scheduling algorithms and the network for the purposes of workflow planning, real-time resource availability identification, scheduling, and provisioning actions.

Artificial Neural Network-Based Early-Age Concrete Strength Monitoring Using Dynamic Response Signals.

Science.gov (United States)

Kim, Junkyeong; Lee, Chaggil; Park, Seunghee

2017-06-07

Concrete is one of the most common materials used to construct a variety of civil infrastructures. However, since concrete might be susceptible to brittle fracture, it is essential to confirm the strength of concrete at the early-age stage of the curing process to prevent unexpected collapse. To address this issue, this study proposes a novel method to estimate the early-age strength of concrete, by integrating an artificial neural network algorithm with a dynamic response measurement of the concrete material. The dynamic response signals of the concrete, including both electromechanical impedances and guided ultrasonic waves, are obtained from an embedded piezoelectric sensor module. The cross-correlation coefficient of the electromechanical impedance signals and the amplitude of the guided ultrasonic wave signals are selected to quantify the variation in dynamic responses according to the strength of the concrete. Furthermore, an artificial neural network algorithm is used to verify a relationship between the variation in dynamic response signals and concrete strength. The results of an experimental study confirm that the proposed approach can be effectively applied to estimate the strength of concrete material from the early-age stage of the curing process.

Metastable Features of Economic Networks and Responses to Exogenous Shocks.

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Ali Hosseiny

Full Text Available It is well known that a network structure plays an important role in addressing a collective behavior. In this paper we study a network of firms and corporations for addressing metastable features in an Ising based model. In our model we observe that if in a recession the government imposes a demand shock to stimulate the network, metastable features shape its response. Actually we find that there exists a minimum bound where any demand shock with a size below it is unable to trigger the market out of recession. We then investigate the impact of network characteristics on this minimum bound. We surprisingly observe that in a Watts-Strogatz network, although the minimum bound depends on the average of the degrees, when translated into the language of economics, such a bound is independent of the average degrees. This bound is about 0.44ΔGDP, where ΔGDP is the gap of GDP between recession and expansion. We examine our suggestions for the cases of the United States and the European Union in the recent recession, and compare them with the imposed stimulations. While the stimulation in the US has been above our threshold, in the EU it has been far below our threshold. Beside providing a minimum bound for a successful stimulation, our study on the metastable features suggests that in the time of crisis there is a "golden time passage" in which the minimum bound for successful stimulation can be much lower. Hence, our study strongly suggests stimulations to arise within this time passage.

Progressively expanded neural network for automatic material identification in hyperspectral imagery

Science.gov (United States)

Paheding, Sidike

The science of hyperspectral remote sensing focuses on the exploitation of the spectral signatures of various materials to enhance capabilities including object detection, recognition, and material characterization. Hyperspectral imagery (HSI) has been extensively used for object detection and identification applications since it provides plenty of spectral information to uniquely identify materials by their reflectance spectra. HSI-based object detection algorithms can be generally classified into stochastic and deterministic approaches. Deterministic approaches are comparatively simple to apply since it is usually based on direct spectral similarity such as spectral angles or spectral correlation. In contrast, stochastic algorithms require statistical modeling and estimation for target class and non-target class. Over the decades, many single class object detection methods have been proposed in the literature, however, deterministic multiclass object detection in HSI has not been explored. In this work, we propose a deterministic multiclass object detection scheme, named class-associative spectral fringe-adjusted joint transform correlation. Human brain is capable of simultaneously processing high volumes of multi-modal data received every second of the day. In contrast, a machine sees input data simply as random binary numbers. Although machines are computationally efficient, they are inferior when comes to data abstraction and interpretation. Thus, mimicking the learning strength of human brain has been current trend in artificial intelligence. In this work, we present a biological inspired neural network, named progressively expanded neural network (PEN Net), based on nonlinear transformation of input neurons to a feature space for better pattern differentiation. In PEN Net, discrete fixed excitations are disassembled and scattered in the feature space as a nonlinear line. Each disassembled element on the line corresponds to a pattern with similar features

Optimizing the Performance of Radionuclide Identification Software in the Hunt for Nuclear Security Threats

International Nuclear Information System (INIS)

Fotion, Katherine A.

2016-01-01

The Radionuclide Analysis Kit (RNAK), my team's most recent nuclide identification software, is entering the testing phase. A question arises: will removing rare nuclides from the software's library improve its overall performance? An affirmative response indicates fundamental errors in the software's framework, while a negative response confirms the effectiveness of the software's key machine learning algorithms. After thorough testing, I found that the performance of RNAK cannot be improved with the library choice effect, thus verifying the effectiveness of RNAK's algorithms - multiple linear regression, Bayesian network using the Viterbi algorithm, and branch and bound search.

Mapping standards for home networking

NARCIS (Netherlands)

Kaa, G. van de; Hartog, F.T.H. den; Vries, H.J. de

2009-01-01

In this study, we apply a step-by-step approach for the identification of standards for home networking. We develop a classification and we use this classification to categorize sixty-four (sets of) standards. By developing this categorization, we have brought order to the chaos of home networking

A Conserved Circular Network of Coregulated Lipids Modulates Innate Immune Responses.

Science.gov (United States)

Köberlin, Marielle S; Snijder, Berend; Heinz, Leonhard X; Baumann, Christoph L; Fauster, Astrid; Vladimer, Gregory I; Gavin, Anne-Claude; Superti-Furga, Giulio

2015-07-02

Lipid composition affects the biophysical properties of membranes that provide a platform for receptor-mediated cellular signaling. To study the regulatory role of membrane lipid composition, we combined genetic perturbations of sphingolipid metabolism with the quantification of diverse steps in Toll-like receptor (TLR) signaling and mass spectrometry-based lipidomics. Membrane lipid composition was broadly affected by these perturbations, revealing a circular network of coregulated sphingolipids and glycerophospholipids. This evolutionarily conserved network architecture simultaneously reflected membrane lipid metabolism, subcellular localization, and adaptation mechanisms. Integration of the diverse TLR-induced inflammatory phenotypes with changes in lipid abundance assigned distinct functional roles to individual lipid species organized across the network. This functional annotation accurately predicted the inflammatory response of cells derived from patients suffering from lipid storage disorders, based solely on their altered membrane lipid composition. The analytical strategy described here empowers the understanding of higher-level organization of membrane lipid function in diverse biological systems. Copyright © 2015 The Authors. Published by Elsevier Inc. All rights reserved.

Network Biomarkers of Bladder Cancer Based on a Genome-Wide Genetic and Epigenetic Network Derived from Next-Generation Sequencing Data.

Science.gov (United States)

Li, Cheng-Wei; Chen, Bor-Sen

2016-01-01

Epigenetic and microRNA (miRNA) regulation are associated with carcinogenesis and the development of cancer. By using the available omics data, including those from next-generation sequencing (NGS), genome-wide methylation profiling, candidate integrated genetic and epigenetic network (IGEN) analysis, and drug response genome-wide microarray analysis, we constructed an IGEN system based on three coupling regression models that characterize protein-protein interaction networks (PPINs), gene regulatory networks (GRNs), miRNA regulatory networks (MRNs), and epigenetic regulatory networks (ERNs). By applying system identification method and principal genome-wide network projection (PGNP) to IGEN analysis, we identified the core network biomarkers to investigate bladder carcinogenic mechanisms and design multiple drug combinations for treating bladder cancer with minimal side-effects. The progression of DNA repair and cell proliferation in stage 1 bladder cancer ultimately results not only in the derepression of miR-200a and miR-200b but also in the regulation of the TNF pathway to metastasis-related genes or proteins, cell proliferation, and DNA repair in stage 4 bladder cancer. We designed a multiple drug combination comprising gefitinib, estradiol, yohimbine, and fulvestrant for treating stage 1 bladder cancer with minimal side-effects, and another multiple drug combination comprising gefitinib, estradiol, chlorpromazine, and LY294002 for treating stage 4 bladder cancer with minimal side-effects.

Optimization of multilayer neural network parameters for speaker recognition

Science.gov (United States)

Tovarek, Jaromir; Partila, Pavol; Rozhon, Jan; Voznak, Miroslav; Skapa, Jan; Uhrin, Dominik; Chmelikova, Zdenka

2016-05-01

This article discusses the impact of multilayer neural network parameters for speaker identification. The main task of speaker identification is to find a specific person in the known set of speakers. It means that the voice of an unknown speaker (wanted person) belongs to a group of reference speakers from the voice database. One of the requests was to develop the text-independent system, which means to classify wanted person regardless of content and language. Multilayer neural network has been used for speaker identification in this research. Artificial neural network (ANN) needs to set parameters like activation function of neurons, steepness of activation functions, learning rate, the maximum number of iterations and a number of neurons in the hidden and output layers. ANN accuracy and validation time are directly influenced by the parameter settings. Different roles require different settings. Identification accuracy and ANN validation time were evaluated with the same input data but different parameter settings. The goal was to find parameters for the neural network with the highest precision and shortest validation time. Input data of neural networks are a Mel-frequency cepstral coefficients (MFCC). These parameters describe the properties of the vocal tract. Audio samples were recorded for all speakers in a laboratory environment. Training, testing and validation data set were split into 70, 15 and 15 %. The result of the research described in this article is different parameter setting for the multilayer neural network for four speakers.

Methods for parameter identification in oscillatory networks and application to cortical and thalamic 600 Hz activity.

Science.gov (United States)

Leistritz, L; Suesse, T; Haueisen, J; Hilgenfeld, B; Witte, H

2006-01-01

Directed information transfer in the human brain occurs presumably by oscillations. As of yet, most approaches for the analysis of these oscillations are based on time-frequency or coherence analysis. The present work concerns the modeling of cortical 600 Hz oscillations, localized within the Brodmann Areas 3b and 1 after stimulation of the nervus medianus, by means of coupled differential equations. This approach leads to the so-called parameter identification problem, where based on a given data set, a set of unknown parameters of a system of ordinary differential equations is determined by special optimization procedures. Some suitable algorithms for this task are presented in this paper. Finally an oscillatory network model is optimally fitted to the data taken from ten volunteers.

Neural networks for triggering

International Nuclear Information System (INIS)

Denby, B.; Campbell, M.; Bedeschi, F.; Chriss, N.; Bowers, C.; Nesti, F.

1990-01-01

Two types of neural network beauty trigger architectures, based on identification of electrons in jets and recognition of secondary vertices, have been simulated in the environment of the Fermilab CDF experiment. The efficiencies for B's and rejection of background obtained are encouraging. If hardware tests are successful, the electron identification architecture will be tested in the 1991 run of CDF. 10 refs., 5 figs., 1 tab

Networks of high mutual information define the structural proximity of catalytic sites: implications for catalytic residue identification.

Directory of Open Access Journals (Sweden)

Cristina Marino Buslje

Full Text Available Identification of catalytic residues (CR is essential for the characterization of enzyme function. CR are, in general, conserved and located in the functional site of a protein in order to attain their function. However, many non-catalytic residues are highly conserved and not all CR are conserved throughout a given protein family making identification of CR a challenging task. Here, we put forward the hypothesis that CR carry a particular signature defined by networks of close proximity residues with high mutual information (MI, and that this signature can be applied to distinguish functional from other non-functional conserved residues. Using a data set of 434 Pfam families included in the catalytic site atlas (CSA database, we tested this hypothesis and demonstrated that MI can complement amino acid conservation scores to detect CR. The Kullback-Leibler (KL conservation measurement was shown to significantly outperform both the Shannon entropy and maximal frequency measurements. Residues in the proximity of catalytic sites were shown to be rich in shared MI. A structural proximity MI average score (termed pMI was demonstrated to be a strong predictor for CR, thus confirming the proposed hypothesis. A structural proximity conservation average score (termed pC was also calculated and demonstrated to carry distinct information from pMI. A catalytic likeliness score (Cls, combining the KL, pC and pMI measures, was shown to lead to significantly improved prediction accuracy. At a specificity of 0.90, the Cls method was found to have a sensitivity of 0.816. In summary, we demonstrate that networks of residues with high MI provide a distinct signature on CR and propose that such a signature should be present in other classes of functional residues where the requirement to maintain a particular function places limitations on the diversification of the structural environment along the course of evolution.

Networks of high mutual information define the structural proximity of catalytic sites: implications for catalytic residue identification.

Science.gov (United States)

Marino Buslje, Cristina; Teppa, Elin; Di Doménico, Tomas; Delfino, José María; Nielsen, Morten

2010-11-04

Identification of catalytic residues (CR) is essential for the characterization of enzyme function. CR are, in general, conserved and located in the functional site of a protein in order to attain their function. However, many non-catalytic residues are highly conserved and not all CR are conserved throughout a given protein family making identification of CR a challenging task. Here, we put forward the hypothesis that CR carry a particular signature defined by networks of close proximity residues with high mutual information (MI), and that this signature can be applied to distinguish functional from other non-functional conserved residues. Using a data set of 434 Pfam families included in the catalytic site atlas (CSA) database, we tested this hypothesis and demonstrated that MI can complement amino acid conservation scores to detect CR. The Kullback-Leibler (KL) conservation measurement was shown to significantly outperform both the Shannon entropy and maximal frequency measurements. Residues in the proximity of catalytic sites were shown to be rich in shared MI. A structural proximity MI average score (termed pMI) was demonstrated to be a strong predictor for CR, thus confirming the proposed hypothesis. A structural proximity conservation average score (termed pC) was also calculated and demonstrated to carry distinct information from pMI. A catalytic likeliness score (Cls), combining the KL, pC and pMI measures, was shown to lead to significantly improved prediction accuracy. At a specificity of 0.90, the Cls method was found to have a sensitivity of 0.816. In summary, we demonstrate that networks of residues with high MI provide a distinct signature on CR and propose that such a signature should be present in other classes of functional residues where the requirement to maintain a particular function places limitations on the diversification of the structural environment along the course of evolution.

Identification of some cross flow heat exchanger dynamic responses by measurement with low level binary pseudo-random input signals

International Nuclear Information System (INIS)

Corran, E.R.; Cummins, J.D.; Hopkinson, A.

1964-02-01

An experiment was performed to assess the usefulness of the binary cross-correlation method in the context of the identification problem. An auxiliary burner was excited with a discrete interval binary code and the response to the perturbation of the input heat was observed by recording the variations of the primary inlet, primary outlet and secondary outlet temperatures. The observations were analysed to yield cross-correlation functions and frequency responses were subsequently determined between primary inlet and primary outlet temperatures and also between primary inlet and secondary outlet temperatures. The analysis verified (1) that these dynamic responses of this cross flow heat exchanger may be predicted theoretically, (2) in so far as this heat exchanger is representative of the generality of plant, that the binary cross-correlation method provides adequate identification of plant dynamics for control purposes in environments where small input variations and low signal to noise ratio are obligatory. (author)

Evaluation of Coordination of Emergency Response Team through the Social Network Analysis. Case Study: Oil and Gas Refinery.

Science.gov (United States)

Mohammadfam, Iraj; Bastani, Susan; Esaghi, Mahbobeh; Golmohamadi, Rostam; Saee, Ali

2015-03-01

The purpose of this study was to examine the cohesions status of the coordination within response teams in the emergency response team (ERT) in a refinery. For this study, cohesion indicators of social network analysis (SNA; density, degree centrality, reciprocity, and transitivity) were utilized to examine the coordination of the response teams as a whole network. The ERT of this research, which was a case study, included seven teams consisting of 152 members. The required data were collected through structured interviews and were analyzed using the UCINET 6.0 Social Network Analysis Program. The results reported a relatively low number of triple connections, poor coordination with key members, and a high level of mutual relations in the network with low density, all implying that there were low cohesions of coordination in the ERT. The results showed that SNA provided a quantitative and logical approach for the examination of the coordination status among response teams and it also provided a main opportunity for managers and planners to have a clear understanding of the presented status. The research concluded that fundamental efforts were needed to improve the presented situations.

Atomoxetine restores the response inhibition network in Parkinson’s disease

Science.gov (United States)

Rae, Charlotte L.; Nombela, Cristina; Rodríguez, Patricia Vázquez; Ye, Zheng; Hughes, Laura E.; Jones, P. Simon; Ham, Timothy; Rittman, Timothy; Coyle-Gilchrist, Ian; Regenthal, Ralf; Sahakian, Barbara J.; Barker, Roger A.; Robbins, Trevor W.

2016-01-01

Abstract Parkinson’s disease impairs the inhibition of responses, and whilst impulsivity is mild for some patients, severe impulse control disorders affect ∼10% of cases. Based on preclinical models we proposed that noradrenergic denervation contributes to the impairment of response inhibition, via changes in the prefrontal cortex and its subcortical connections. Previous work in Parkinson’s disease found that the selective noradrenaline reuptake inhibitor atomoxetine could improve response inhibition, gambling decisions and reflection impulsivity. Here we tested the hypotheses that atomoxetine can restore functional brain networks for response inhibition in Parkinson’s disease, and that both structural and functional connectivity determine the behavioural effect. In a randomized, double-blind placebo-controlled crossover study, 19 patients with mild-to-moderate idiopathic Parkinson’s disease underwent functional magnetic resonance imaging during a stop-signal task, while on their usual dopaminergic therapy. Patients received 40 mg atomoxetine or placebo, orally. This regimen anticipates that noradrenergic therapies for behavioural symptoms would be adjunctive to, not a replacement for, dopaminergic therapy. Twenty matched control participants provided normative data. Arterial spin labelling identified no significant changes in regional perfusion. We assessed functional interactions between key frontal and subcortical brain areas for response inhibition, by comparing 20 dynamic causal models of the response inhibition network, inverted to the functional magnetic resonance imaging data and compared using random effects model selection. We found that the normal interaction between pre-supplementary motor cortex and the inferior frontal gyrus was absent in Parkinson’s disease patients on placebo (despite dopaminergic therapy), but this connection was restored by atomoxetine. The behavioural change in response inhibition (improvement indicated by reduced

Fuel number identification method and device

International Nuclear Information System (INIS)

Doi, Takami; Seno, Makoto; Kikuchi, Takashi; Sakamoto, Hiromi; Takahashi, Masaki; Tanaka, Keiji.

1997-01-01

The present invention provides a method of and a device for automatically identifying fuel numbers impressed on fuel assemblies disposed in a fuel reprocessing facility, power plant and a reactor core at a high speed and at a high identification rate. Namely, three or more character images are photographed for one fuel assembly as an object of the identification under different illumination conditions. As a result, different character images by the number of the illumination directions can be obtained for identical impressed characters. Learning on a neural network system is applied to the images of all of the characters impressed on the fuel assembly obtained under illumination of predetermined directions. Then, result of the identification by the number of the illumination directions can be obtained for each of the characters as an object of the identification. As a result, since the result of the identification is determined based on a theory of decision of majority, highly automatic identification can be realized. (I.S.)

Shortest-path network analysis is a useful approach toward identifying genetic determinants of longevity.

Directory of Open Access Journals (Sweden)

J R Managbanag

Full Text Available BACKGROUND: Identification of genes that modulate longevity is a major focus of aging-related research and an area of intense public interest. In addition to facilitating an improved understanding of the basic mechanisms of aging, such genes represent potential targets for therapeutic intervention in multiple age-associated diseases, including cancer, heart disease, diabetes, and neurodegenerative disorders. To date, however, targeted efforts at identifying longevity-associated genes have been limited by a lack of predictive power, and useful algorithms for candidate gene-identification have also been lacking. METHODOLOGY/PRINCIPAL FINDINGS: We have utilized a shortest-path network analysis to identify novel genes that modulate longevity in Saccharomyces cerevisiae. Based on a set of previously reported genes associated with increased life span, we applied a shortest-path network algorithm to a pre-existing protein-protein interaction dataset in order to construct a shortest-path longevity network. To validate this network, the replicative aging potential of 88 single-gene deletion strains corresponding to predicted components of the shortest-path longevity network was determined. Here we report that the single-gene deletion strains identified by our shortest-path longevity analysis are significantly enriched for mutations conferring either increased or decreased replicative life span, relative to a randomly selected set of 564 single-gene deletion strains or to the current data set available for the entire haploid deletion collection. Further, we report the identification of previously unknown longevity genes, several of which function in a conserved longevity pathway believed to mediate life span extension in response to dietary restriction. CONCLUSIONS/SIGNIFICANCE: This work demonstrates that shortest-path network analysis is a useful approach toward identifying genetic determinants of longevity and represents the first application of

Integration of white matter network is associated with interindividual differences in psychologically mediated placebo response in migraine patients.

Science.gov (United States)

Liu, Jixin; Ma, Shaohui; Mu, Junya; Chen, Tao; Xu, Qing; Dun, Wanghuan; Tian, Jie; Zhang, Ming

2017-10-01

Individual differences of brain changes of neural communication and integration in the modular architecture of the human brain network exist for the repeated migraine attack and physical or psychological stressors. However, whether the interindividual variability in the migraine brain connectome predicts placebo response to placebo treatment is still unclear. Using DTI and graph theory approaches, we systematically investigated the topological organization of white matter networks in 71 patients with migraine without aura (MO) and 50 matched healthy controls at three levels: global network measure, nodal efficiency, and nodal intramodule/intermodule efficiency. All patients participated in an 8-week sham acupuncture treatment to induce analgesia. In our results, 30% (n = 21) of patients had 50% change in migraine days from baseline after placebo treatment. At baseline, abnormal increased network integration was found in MO patients as compared with the HC group, and the increased global efficiency before starting clinical treatment was associated with their following placebo response. For nodal efficiency, significantly increased within-subnetwork nodal efficiency and intersubnetwork connectivity of the hippocampus and middle frontal gyrus in patients' white matter network were correlated with the responses of follow-up placebo treatment. Our findings suggested that the trait-like individual differences in pain-related maladaptive stress interfered with and diminished the capacity of chronic pain modulation differently, and the placebo response for treatment could be predicted from a prior white matter network modular structure in migraineurs. Hum Brain Mapp 38:5250-5259, 2017. © 2017 Wiley Periodicals, Inc. © 2017 Wiley Periodicals, Inc.

Networked gamma radiation detection system for tactical deployment

Science.gov (United States)

Mukhopadhyay, Sanjoy; Maurer, Richard; Wolff, Ronald; Smith, Ethan; Guss, Paul; Mitchell, Stephen

2015-08-01

A networked gamma radiation detection system with directional sensitivity and energy spectral data acquisition capability is being developed by the National Security Technologies, LLC, Remote Sensing Laboratory to support the close and intense tactical engagement of law enforcement who carry out counterterrorism missions. In the proposed design, three clusters of 2″ × 4″ × 16″ sodium iodide crystals (4 each) with digiBASE-E (for list mode data collection) would be placed on the passenger side of a minivan. To enhance localization and facilitate rapid identification of isotopes, advanced smart real-time localization and radioisotope identification algorithms like WAVRAD (wavelet-assisted variance reduction for anomaly detection) and NSCRAD (nuisance-rejection spectral comparison ratio anomaly detection) will be incorporated. We will test a collection of algorithms and analysis that centers on the problem of radiation detection with a distributed sensor network. We will study the basic characteristics of a radiation sensor network and focus on the trade-offs between false positive alarm rates, true positive alarm rates, and time to detect multiple radiation sources in a large area. Empirical and simulation analyses of critical system parameters, such as number of sensors, sensor placement, and sensor response functions, will be examined. This networked system will provide an integrated radiation detection architecture and framework with (i) a large nationally recognized search database equivalent that would help generate a common operational picture in a major radiological crisis; (ii) a robust reach back connectivity for search data to be evaluated by home teams; and, finally, (iii) a possibility of integrating search data from multi-agency responders.

Target identification using Zernike moments and neural networks

Science.gov (United States)

Azimi-Sadjadi, Mahmood R.; Jamshidi, Arta A.; Nevis, Andrew J.

2001-10-01

The development of an underwater target identification algorithm capable of identifying various types of underwater targets, such as mines, under different environmental conditions pose many technical problems. Some of the contributing factors are: targets have diverse sizes, shapes and reflectivity properties. Target emplacement environment is variable; targets may be proud or partially buried. Environmental properties vary significantly from one location to another. Bottom features such as sand, rocks, corals, and vegetation can conceal a target whether it is partially buried or proud. Competing clutter with responses that closely resemble those of the targets may lead to false positives. All the problems mentioned above contribute to overly difficult and challenging conditions that could lead to unreliable algorithm performance with existing methods. In this paper, we developed and tested a shape-dependent feature extraction scheme that provides features invariant to rotation, size scaling and translation; properties that are extremely useful for any target classification problem. The developed schemes were tested on an electro-optical imagery data set collected under different environmental conditions with variable background, range and target types. The electro-optic data set was collected using a Laser Line Scan (LLS) sensor by the Coastal Systems Station (CSS), located in Panama City, Florida. The performance of the developed scheme and its robustness to distortion, rotation, scaling and translation was also studied.

Responses to a self-presented suicide attempt in social media: a social network analysis.

Science.gov (United States)

Fu, King-Wa; Cheng, Qijin; Wong, Paul W C; Yip, Paul S F

2013-01-01

The self-presentation of suicidal acts in social media has become a public health concern. This article centers on a Chinese microblogger who posted a wrist-cutting picture that was widely circulated in Chinese social media in 2011. This exploratory study examines written reactions of a group of Chinese microbloggers exposed to the post containing a self-harming message and photo. In addition, we investigate the pattern of information diffusion via a social network. We systematically collected and analyzed 5,971 generated microblogs and the network of information diffusion. We found that a significant portion of written responses (36.6%) could help vulnerable netizens by providing peer-support and calls for help. These responses were reposted and diffused via an online social network with markedly more clusters of users--and at a faster pace-- than a set of randomly generated networks. We conclude that social media can be a double-edged sword: While it may contagiously affect others by spreading suicidal thoughts and acts, it may also play a positive role by assisting people at risk for suicide, providing rescue or support. More research is needed to learn how suicidally vulnerable people interact with online suicide information, and how we can effectively intervene.

Modeling of Throughput in Production Lines Using Response Surface Methodology and Artificial Neural Networks

Directory of Open Access Journals (Sweden)

Federico Nuñez-Piña

2018-01-01

Full Text Available The problem of assigning buffers in a production line to obtain an optimum production rate is a combinatorial problem of type NP-Hard and it is known as Buffer Allocation Problem. It is of great importance for designers of production systems due to the costs involved in terms of space requirements. In this work, the relationship among the number of buffer slots, the number of work stations, and the production rate is studied. Response surface methodology and artificial neural network were used to develop predictive models to find optimal throughput values. 360 production rate values for different number of buffer slots and workstations were used to obtain a fourth-order mathematical model and four hidden layers’ artificial neural network. Both models have a good performance in predicting the throughput, although the artificial neural network model shows a better fit (R=1.0000 against the response surface methodology (R=0.9996. Moreover, the artificial neural network produces better predictions for data not utilized in the models construction. Finally, this study can be used as a guide to forecast the maximum or near maximum throughput of production lines taking into account the buffer size and the number of machines in the line.

Genome-Wide Identification and Analysis of Drought-Responsive Genes and MicroRNAs in Tobacco

Directory of Open Access Journals (Sweden)

Fuqiang Yin

2015-03-01

Full Text Available Drought stress response is a complex trait regulated at transcriptional and post-transcriptional levels in tobacco. Since the 1990s, many studies have shown that miRNAs act in many ways to regulate target expression in plant growth, development and stress response. The recent draft genome sequence of Nicotiana benthamiana has provided a framework for Digital Gene Expression (DGE and small RNA sequencing to understand patterns of transcription in the context of plant response to environmental stress. We sequenced and analyzed three Digital Gene Expression (DGE libraries from roots of normal and drought-stressed tobacco plants, and four small RNA populations from roots, stems and leaves of control or drought-treated tobacco plants, respectively. We identified 276 candidate drought responsive genes (DRGs with sequence similarities to 64 known DRGs from other model plant crops, 82 were transcription factors (TFs including WRKY, NAC, ERF and bZIP families. Of these tobacco DRGs, 54 differentially expressed DRGs included 21 TFs, which belonged to 4 TF families such as NAC (6, MYB (4, ERF (10, and bZIP (1. Additionally, we confirmed expression of 39 known miRNA families (122 members and five conserved miRNA families, which showed differential regulation under drought stress. Targets of miRNAs were further surveyed based on a recently published study, of which ten targets were DRGs. An integrated gene regulatory network is proposed for the molecular mechanisms of tobacco root response to drought stress using differentially expressed DRGs, the changed expression profiles of miRNAs and their target transcripts. This network analysis serves as a reference for future studies on tobacco response stresses such as drought, cold and heavy metals.

UMTS rapid response real-time seismic networks: implementation and strategies at INGV

Science.gov (United States)

Govoni, Aladino; Margheriti, Lucia; Moretti, Milena; Lauciani, Valentino; Sensale, Gianpaolo; Bucci, Augusto; Criscuoli, Fabio

2015-04-01

The benefits of portable real-time seismic networks are several and well known. During the management of a temporary experiment from the real-time data it is possible to detect and fix rapidly problems with power supply, time synchronization, disk failures and, most important, seismic signal quality degradation due to unexpected noise sources or sensor alignment/tampering. This usually minimizes field maintenance trips and maximizes both the quantity and the quality of the acquired data. When the area of the temporary experiment is not well monitored by the local permanent network, the real-time data from the temporary experiment can be fed to the permanent network monitoring system improving greatly both the real-time hypocentral locations and the final revised bulletin. All these benefits apply also in case of seismic crises when rapid deployment stations can significantly contribute to the aftershock analysis. Nowadays data transmission using meshed radio networks or satellite systems is not a big technological problem for a permanent seismic network where each site is optimized for the device power consumption and is usually installed by properly specialized technicians that can configure transmission devices and align antennas. This is not usually practical for temporary networks and especially for rapid response networks where the installation time is the main concern. These difficulties are substantially lowered using the now widespread UMTS technology for data transmission. A small (but sometimes power hungry) properly configured device with an omnidirectional antenna must be added to the station assembly. All setups are usually configured before deployment and this allows for an easy installation also by untrained personnel. We describe here the implementation of a UMTS based portable seismic network for both temporary experiments and rapid response applications developed at INGV. The first field experimentation of this approach dates back to the 2009 L

Social networks : Effects on Identification, Performance and Satisfaction Effects on identification, performance and satisfaction

NARCIS (Netherlands)

Stormbroek-Burgers, van R.G.B.M.; Montfort, van K.; Sluis, van der E.C. (Lidewey)

2011-01-01

This study contributes to research on the impact of social networks on organizational outcomes in the context of the increasing number of professionals in the Netherlands. The aim of this study was to get insight into the characteristics of professionals’ social networks and to examine the effect of

DReAM: Demand Response Architecture for Multi-level District Heating and Cooling Networks

Energy Technology Data Exchange (ETDEWEB)

Bhattacharya, Saptarshi; Chandan, Vikas; Arya, Vijay; Kar, Koushik

2017-05-19

In this paper, we exploit the inherent hierarchy of heat exchangers in District Heating and Cooling (DHC) networks and propose DReAM, a novel Demand Response (DR) architecture for Multi-level DHC networks. DReAM serves to economize system operation while still respecting comfort requirements of individual consumers. Contrary to many present day DR schemes that work on a consumer level granularity, DReAM works at a level of hierarchy above buildings, i.e. substations that supply heat to a group of buildings. This improves the overall DR scalability and reduce the computational complexity. In the first step of the proposed approach, mathematical models of individual substations and their downstream networks are abstracted into appropriately constructed low-complexity structural forms. In the second step, this abstracted information is employed by the utility to perform DR optimization that determines the optimal heat inflow to individual substations rather than buildings, in order to achieve the targeted objectives across the network. We validate the proposed DReAM framework through experimental results under different scenarios on a test network.

Multi-stimulus-responsive shape-memory polymer nanocomposite network cross-linked by cellulose nanocrystals.

Science.gov (United States)

Liu, Ye; Li, Ying; Yang, Guang; Zheng, Xiaotong; Zhou, Shaobing

2015-02-25

In this study, we developed a thermoresponsive and water-responsive shape-memory polymer nanocomposite network by chemically cross-linking cellulose nanocrystals (CNCs) with polycaprolactone (PCL) and polyethylene glycol (PEG). The nanocomposite network was fully characterized, including the microstructure, cross-link density, water contact angle, water uptake, crystallinity, thermal properties, and static and dynamic mechanical properties. We found that the PEG[60]-PCL[40]-CNC[10] nanocomposite exhibited excellent thermo-induced and water-induced shape-memory effects in water at 37 °C (close to body temperature), and the introduction of CNC clearly improved the mechanical properties of the mixture of both PEG and PCL polymers with low molecular weights. In addition, Alamar blue assays based on osteoblasts indicated that the nanocomposites possessed good cytocompatibility. Therefore, this thermoresponsive and water-responsive shape-memory nanocomposite could be potentially developed into a new smart biomaterial.

Construction and comparison of gene co-expression networks shows complex plant immune responses

Directory of Open Access Journals (Sweden)

Luis Guillermo Leal

2014-10-01

Full Text Available Gene co-expression networks (GCNs are graphic representations that depict the coordinated transcription of genes in response to certain stimuli. GCNs provide functional annotations of genes whose function is unknown and are further used in studies of translational functional genomics among species. In this work, a methodology for the reconstruction and comparison of GCNs is presented. This approach was applied using gene expression data that were obtained from immunity experiments in Arabidopsis thaliana, rice, soybean, tomato and cassava. After the evaluation of diverse similarity metrics for the GCN reconstruction, we recommended the mutual information coefficient measurement and a clustering coefficient-based method for similarity threshold selection. To compare GCNs, we proposed a multivariate approach based on the Principal Component Analysis (PCA. Branches of plant immunity that were exemplified by each experiment were analyzed in conjunction with the PCA results, suggesting both the robustness and the dynamic nature of the cellular responses. The dynamic of molecular plant responses produced networks with different characteristics that are differentiable using our methodology. The comparison of GCNs from plant pathosystems, showed that in response to similar pathogens plants could activate conserved signaling pathways. The results confirmed that the closeness of GCNs projected on the principal component space is an indicative of similarity among GCNs. This also can be used to understand global patterns of events triggered during plant immune responses.

Neural Network with Local Memory for Nuclear Reactor Power Level Control

International Nuclear Information System (INIS)

Uluyol, Oender; Ragheb, Magdi; Tsoukalas, Lefteri

2001-01-01

A methodology is introduced for a neural network with local memory called a multilayered local output gamma feedback (LOGF) neural network within the paradigm of locally-recurrent globally-feedforward neural networks. It appears to be well-suited for the identification, prediction, and control tasks in highly dynamic systems; it allows for the presentation of different timescales through incorporation of a gamma memory. A learning algorithm based on the backpropagation-through-time approach is derived. The spatial and temporal weights of the network are iteratively optimized for a given problem using the derived learning algorithm. As a demonstration of the methodology, it is applied to the task of power level control of a nuclear reactor at different fuel cycle conditions. The results demonstrate that the LOGF neural network controller outperforms the classical as well as the state feedback-assisted classical controllers for reactor power level control by showing a better tracking of the demand power, improving the fuel and exit temperature responses, and by performing robustly in different fuel cycle and power level conditions

A Data-Driven Response Virtual Sensor Technique with Partial Vibration Measurements Using Convolutional Neural Network

Science.gov (United States)

Sun, Shan-Bin; He, Yuan-Yuan; Zhou, Si-Da; Yue, Zhen-Jiang

2017-01-01

Measurement of dynamic responses plays an important role in structural health monitoring, damage detection and other fields of research. However, in aerospace engineering, the physical sensors are limited in the operational conditions of spacecraft, due to the severe environment in outer space. This paper proposes a virtual sensor model with partial vibration measurements using a convolutional neural network. The transmissibility function is employed as prior knowledge. A four-layer neural network with two convolutional layers, one fully connected layer, and an output layer is proposed as the predicting model. Numerical examples of two different structural dynamic systems demonstrate the performance of the proposed approach. The excellence of the novel technique is further indicated using a simply supported beam experiment comparing to a modal-model-based virtual sensor, which uses modal parameters, such as mode shapes, for estimating the responses of the faulty sensors. The results show that the presented data-driven response virtual sensor technique can predict structural response with high accuracy. PMID:29231868

A Data-Driven Response Virtual Sensor Technique with Partial Vibration Measurements Using Convolutional Neural Network.

Science.gov (United States)

Sun, Shan-Bin; He, Yuan-Yuan; Zhou, Si-Da; Yue, Zhen-Jiang

2017-12-12

Measurement of dynamic responses plays an important role in structural health monitoring, damage detection and other fields of research. However, in aerospace engineering, the physical sensors are limited in the operational conditions of spacecraft, due to the severe environment in outer space. This paper proposes a virtual sensor model with partial vibration measurements using a convolutional neural network. The transmissibility function is employed as prior knowledge. A four-layer neural network with two convolutional layers, one fully connected layer, and an output layer is proposed as the predicting model. Numerical examples of two different structural dynamic systems demonstrate the performance of the proposed approach. The excellence of the novel technique is further indicated using a simply supported beam experiment comparing to a modal-model-based virtual sensor, which uses modal parameters, such as mode shapes, for estimating the responses of the faulty sensors. The results show that the presented data-driven response virtual sensor technique can predict structural response with high accuracy.

Identification of Light Damping in Structures

DEFF Research Database (Denmark)

Jensen, Jacob Laigaard; Brincker, Rune; Rytter, Anders

is identification by ARMA models assuming a white noise input. Method 2 is identification by simulation of a free decay response. Experimental data on the free decay response has been obtained directly by measurement as well as by the random decrement technique. Two experimental cases has been considered. The first...

Identification of Light Damping in Structures

DEFF Research Database (Denmark)

Jensen, J. L.; Brincker, Rune; Rytter, A.

1990-01-01

is identification by ARMA models assuming a white noise input.Method 2 is identification by simulation of a free decay response. Experimental data on the free decay response has been obtained directly by measurement as well as by the random decrement technique. Two experimental cases has been considered. the first...

Network analysis of oyster transcriptome revealed a cascade of cellular responses during recovery after heat shock.

Directory of Open Access Journals (Sweden)

Lingling Zhang

Full Text Available Oysters, as a major group of marine bivalves, can tolerate a wide range of natural and anthropogenic stressors including heat stress. Recent studies have shown that oysters pretreated with heat shock can result in induced heat tolerance. A systematic study of cellular recovery from heat shock may provide insights into the mechanism of acquired thermal tolerance. In this study, we performed the first network analysis of oyster transcriptome by reanalyzing microarray data from a previous study. Network analysis revealed a cascade of cellular responses during oyster recovery after heat shock and identified responsive gene modules and key genes. Our study demonstrates the power of network analysis in a non-model organism with poor gene annotations, which can lead to new discoveries that go beyond the focus on individual genes.

Network-level accident-mapping: Distance based pattern matching using artificial neural network.

Science.gov (United States)

Deka, Lipika; Quddus, Mohammed

2014-04-01

The objective of an accident-mapping algorithm is to snap traffic accidents onto the correct road segments. Assigning accidents onto the correct segments facilitate to robustly carry out some key analyses in accident research including the identification of accident hot-spots, network-level risk mapping and segment-level accident risk modelling. Existing risk mapping algorithms have some severe limitations: (i) they are not easily 'transferable' as the algorithms are specific to given accident datasets; (ii) they do not perform well in all road-network environments such as in areas of dense road network; and (iii) the methods used do not perform well in addressing inaccuracies inherent in and type of road environment. The purpose of this paper is to develop a new accident mapping algorithm based on the common variables observed in most accident databases (e.g. road name and type, direction of vehicle movement before the accident and recorded accident location). The challenges here are to: (i) develop a method that takes into account uncertainties inherent to the recorded traffic accident data and the underlying digital road network data, (ii) accurately determine the type and proportion of inaccuracies, and (iii) develop a robust algorithm that can be adapted for any accident set and road network of varying complexity. In order to overcome these challenges, a distance based pattern-matching approach is used to identify the correct road segment. This is based on vectors containing feature values that are common in the accident data and the network data. Since each feature does not contribute equally towards the identification of the correct road segments, an ANN approach using the single-layer perceptron is used to assist in "learning" the relative importance of each feature in the distance calculation and hence the correct link identification. The performance of the developed algorithm was evaluated based on a reference accident dataset from the UK confirming that

Inferring time-varying network topologies from gene expression data.

Science.gov (United States)

Rao, Arvind; Hero, Alfred O; States, David J; Engel, James Douglas

2007-01-01

Most current methods for gene regulatory network identification lead to the inference of steady-state networks, that is, networks prevalent over all times, a hypothesis which has been challenged. There has been a need to infer and represent networks in a dynamic, that is, time-varying fashion, in order to account for different cellular states affecting the interactions amongst genes. In this work, we present an approach, regime-SSM, to understand gene regulatory networks within such a dynamic setting. The approach uses a clustering method based on these underlying dynamics, followed by system identification using a state-space model for each learnt cluster--to infer a network adjacency matrix. We finally indicate our results on the mouse embryonic kidney dataset as well as the T-cell activation-based expression dataset and demonstrate conformity with reported experimental evidence.

Identification of illicit drugs by using SOM neural networks

Energy Technology Data Exchange (ETDEWEB)

Liang Meiyan; Shen Jingling; Wang Guangqin [Beijing Key Lab for Terahertz Spectroscopy and Imaging, Key Laboratory of Terahertz Optoelectronics, Ministry of Education, Department of Physics, Capital Normal University, Beijing 100037 (China)], E-mail: liangyan661982@163.com, E-mail: jinglingshen@gmail.com, E-mail: pywgq2004@163.com

2008-07-07

Absorption spectra of six illicit drugs were measured by using the terahertz time-domain spectroscopy technique in the range 0.2-2.6 THz and then clustered with self-organization feature map (SOM) artificial neural network. After the network training process, the spectra collected at another time were identified successfully by the well-trained SOM network. An effective distance was introduced as a quantitative criterion to decide which cluster the new spectra were affiliated with.

Identification of illicit drugs by using SOM neural networks

International Nuclear Information System (INIS)

Liang Meiyan; Shen Jingling; Wang Guangqin

2008-01-01

Absorption spectra of six illicit drugs were measured by using the terahertz time-domain spectroscopy technique in the range 0.2-2.6 THz and then clustered with self-organization feature map (SOM) artificial neural network. After the network training process, the spectra collected at another time were identified successfully by the well-trained SOM network. An effective distance was introduced as a quantitative criterion to decide which cluster the new spectra were affiliated with

On the structure of Bayesian network for Indonesian text document paraphrase identification

Science.gov (United States)

Prayogo, Ario Harry; Syahrul Mubarok, Mohamad; Adiwijaya

2018-03-01

Paraphrase identification is an important process within natural language processing. The idea is to automatically recognize phrases that have different forms but contain same meanings. For examples if we input query “causing fire hazard”, then the computer has to recognize this query that this query has same meaning as “the cause of fire hazard. Paraphrasing is an activity that reveals the meaning of an expression, writing, or speech using different words or forms, especially to achieve greater clarity. In this research we will focus on classifying two Indonesian sentences whether it is a paraphrase to each other or not. There are four steps in this research, first is preprocessing, second is feature extraction, third is classifier building, and the last is performance evaluation. Preprocessing consists of tokenization, non-alphanumerical removal, and stemming. After preprocessing we will conduct feature extraction in order to build new features from given dataset. There are two kinds of features in the research, syntactic features and semantic features. Syntactic features consist of normalized levenshtein distance feature, term-frequency based cosine similarity feature, and LCS (Longest Common Subsequence) feature. Semantic features consist of Wu and Palmer feature and Shortest Path Feature. We use Bayesian Networks as the method of training the classifier. Parameter estimation that we use is called MAP (Maximum A Posteriori). For structure learning of Bayesian Networks DAG (Directed Acyclic Graph), we use BDeu (Bayesian Dirichlet equivalent uniform) scoring function and for finding DAG with the best BDeu score, we use K2 algorithm. In evaluation step we perform cross-validation. The average result that we get from testing the classifier as follows: Precision 75.2%, Recall 76.5%, F1-Measure 75.8% and Accuracy 75.6%.

Identification of hybrid node and link communities in complex networks.

Science.gov (United States)

He, Dongxiao; Jin, Di; Chen, Zheng; Zhang, Weixiong

2015-03-02

Identifying communities in complex networks is an effective means for analyzing complex systems, with applications in diverse areas such as social science, engineering, biology and medicine. Finding communities of nodes and finding communities of links are two popular schemes for network analysis. These schemes, however, have inherent drawbacks and are inadequate to capture complex organizational structures in real networks. We introduce a new scheme and an effective approach for identifying complex mixture structures of node and link communities, called hybrid node-link communities. A central piece of our approach is a probabilistic model that accommodates node, link and hybrid node-link communities. Our extensive experiments on various real-world networks, including a large protein-protein interaction network and a large network of semantically associated words, illustrated that the scheme for hybrid communities is superior in revealing network characteristics. Moreover, the new approach outperformed the existing methods for finding node or link communities separately.

Identification of hybrid node and link communities in complex networks

Science.gov (United States)

He, Dongxiao; Jin, Di; Chen, Zheng; Zhang, Weixiong

2015-03-01

Identifying communities in complex networks is an effective means for analyzing complex systems, with applications in diverse areas such as social science, engineering, biology and medicine. Finding communities of nodes and finding communities of links are two popular schemes for network analysis. These schemes, however, have inherent drawbacks and are inadequate to capture complex organizational structures in real networks. We introduce a new scheme and an effective approach for identifying complex mixture structures of node and link communities, called hybrid node-link communities. A central piece of our approach is a probabilistic model that accommodates node, link and hybrid node-link communities. Our extensive experiments on various real-world networks, including a large protein-protein interaction network and a large network of semantically associated words, illustrated that the scheme for hybrid communities is superior in revealing network characteristics. Moreover, the new approach outperformed the existing methods for finding node or link communities separately.

Biometric National Identification Number Generation for Secure ...

African Journals Online (AJOL)

Biometric National Identification Number Generation for Secure Network Authentication Based Fingerprint. ... Username, Password, Remember me, or Register ... In this paper an authentication based finger print biometric system is proposed ...

Chicago Ebola Response Network (CERN): A Citywide Cross-hospital Collaborative for Infectious Disease Preparedness.

Science.gov (United States)

Lateef, Omar; Hota, Bala; Landon, Emily; Kociolek, Larry K; Morita, Julie; Black, Stephanie; Noskin, Gary; Kelleher, Michael; Curell, Krista; Galat, Amy; Ansell, David; Segreti, John; Weber, Stephen G

2015-11-15

The 2014-2015 Ebola virus disease (EVD) epidemic and international public health emergency has been referred to as a "black swan" event, or an event that is unlikely, hard to predict, and highly impactful once it occurs. The Chicago Ebola Response Network (CERN) was formed in response to EVD and is capable of receiving and managing new cases of EVD, while also laying the foundation for a public health network that can anticipate, manage, and prevent the next black swan public health event. By sharing expertise, risk, and resources among 4 major academic centers, Chicago created a sustainable network to respond to the latest in a series of public health emergencies. In this respect, CERN is a roadmap for how a region can prepare to respond to public health emergencies, thereby preventing negative impacts through planning and implementation. © The Author 2015. Published by Oxford University Press on behalf of the Infectious Diseases Society of America. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

Large deviations and queueing networks: Methods for rate function identification

OpenAIRE

Atar, Rami; Dupuis, Paul

1999-01-01

This paper considers the problem of rate function identification for multidimensional queueing models with feedback. A set of techniques are introduced which allow this identification when the model possesses certain structural properties. The main tools used are representation formulas for exponential integrals, weak convergence methods, and the regularity properties of associated Skorokhod Problems. Two examples are treated as special cases of the general theory: the classical Jackson netwo...

Human recognition in a video network

Science.gov (United States)

Bhanu, Bir

2009-10-01

Video networks is an emerging interdisciplinary field with significant and exciting scientific and technological challenges. It has great promise in solving many real-world problems and enabling a broad range of applications, including smart homes, video surveillance, environment and traffic monitoring, elderly care, intelligent environments, and entertainment in public and private spaces. This paper provides an overview of the design of a wireless video network as an experimental environment, camera selection, hand-off and control, anomaly detection. It addresses challenging questions for individual identification using gait and face at a distance and present new techniques and their comparison for robust identification.

A Simple Network Architecture Accounts for Diverse Reward Time Responses in Primary Visual Cortex.

Science.gov (United States)

Huertas, Marco A; Hussain Shuler, Marshall G; Shouval, Harel Z

2015-09-16

Many actions performed by animals and humans depend on an ability to learn, estimate, and produce temporal intervals of behavioral relevance. Exemplifying such learning of cued expectancies is the observation of reward-timing activity in the primary visual cortex (V1) of rodents, wherein neural responses to visual cues come to predict the time of future reward as behaviorally experienced in the past. These reward-timing responses exhibit significant heterogeneity in at least three qualitatively distinct classes: sustained increase or sustained decrease in firing rate until the time of expected reward, and a class of cells that reach a peak in firing at the expected delay. We elaborate upon our existing model by including inhibitory and excitatory units while imposing simple connectivity rules to demonstrate what role these inhibitory elements and the simple architectures play in sculpting the response dynamics of the network. We find that simply adding inhibition is not sufficient for obtaining the different distinct response classes, and that a broad distribution of inhibitory projections is necessary for obtaining peak-type responses. Furthermore, although changes in connection strength that modulate the effects of inhibition onto excitatory units have a strong impact on the firing rate profile of these peaked responses, the network exhibits robustness in its overall ability to predict the expected time of reward. Finally, we demonstrate how the magnitude of expected reward can be encoded at the expected delay in the network and how peaked responses express this reward expectancy. Heterogeneity in single-neuron responses is a common feature of neuronal systems, although sometimes, in theoretical approaches, it is treated as a nuisance and seldom considered as conveying a different aspect of a signal. In this study, we focus on the heterogeneous responses in the primary visual cortex of rodents trained with a predictable delayed reward time. We describe under what

Identification of barley and rye varieties using matrix- assisted laser desorption/ionisation time-of-flight mass spectrometry with neural networks

DEFF Research Database (Denmark)

Bloch, H.A.; Petersen, Marianne Kjerstine; Sperotto, Maria Maddalena

2001-01-01

developed, which combines analysis of alcohol-soluble wheat proteins (gliadins) using matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry with neural networks. Here we have applied the same method for the identification of both barley (Hordeum vulgare L.) and rye (Secale cereale L.......) varieties. For barley, 95% of the mass spectra were correctly classified. This is an encouraging result, since in earlier experiments only a grouping into subsets of varieties was possible. However, the method was not useful in the classification of rye, due to the strong similarity between mass spectra...

On-line signal trend identification

International Nuclear Information System (INIS)

Tambouratzis, T.; Antonopoulos-Domis, M.

2004-01-01

An artificial neural network, based on the self-organizing map, is proposed for on-line signal trend identification. Trends are categorized at each incoming signal as steady-state, increasing and decreasing, while they are further classified according to characteristics such signal shape and rate of change. Tests with model-generated signals illustrate the ability of the self-organizing map to accurately and reliably perform on-line trend identification in terms of both detection and classification. The proposed methodology has been found robust to the presence of white noise

Modulation of network excitability by persistent activity: how working memory affects the response to incoming stimuli.

Directory of Open Access Journals (Sweden)

Elisa M Tartaglia

2015-02-01

Full Text Available Persistent activity and match effects are widely regarded as neuronal correlates of short-term storage and manipulation of information, with the first serving active maintenance and the latter supporting the comparison between memory contents and incoming sensory information. The mechanistic and functional relationship between these two basic neurophysiological signatures of working memory remains elusive. We propose that match signals are generated as a result of transient changes in local network excitability brought about by persistent activity. Neurons more active will be more excitable, and thus more responsive to external inputs. Accordingly, network responses are jointly determined by the incoming stimulus and the ongoing pattern of persistent activity. Using a spiking model network, we show that this mechanism is able to reproduce most of the experimental phenomenology of match effects as exposed by single-cell recordings during delayed-response tasks. The model provides a unified, parsimonious mechanistic account of the main neuronal correlates of working memory, makes several experimentally testable predictions, and demonstrates a new functional role for persistent activity.

Networks in Cell Biology

Science.gov (United States)

Buchanan, Mark; Caldarelli, Guido; De Los Rios, Paolo; Rao, Francesco; Vendruscolo, Michele

2010-05-01

Introduction; 1. Network views of the cell Paolo De Los Rios and Michele Vendruscolo; 2. Transcriptional regulatory networks Sarath Chandra Janga and M. Madan Babu; 3. Transcription factors and gene regulatory networks Matteo Brilli, Elissa Calistri and Pietro Lió; 4. Experimental methods for protein interaction identification Peter Uetz, Björn Titz, Seesandra V. Rajagopala and Gerard Cagney; 5. Modeling protein interaction networks Francesco Rao; 6. Dynamics and evolution of metabolic networks Daniel Segré; 7. Hierarchical modularity in biological networks: the case of metabolic networks Erzsébet Ravasz Regan; 8. Signalling networks Gian Paolo Rossini; Appendix 1. Complex networks: from local to global properties D. Garlaschelli and G. Caldarelli; Appendix 2. Modelling the local structure of networks D. Garlaschelli and G. Caldarelli; Appendix 3. Higher-order topological properties S. Ahnert, T. Fink and G. Caldarelli; Appendix 4. Elementary mathematical concepts A. Gabrielli and G. Caldarelli; References.

Considerations on command and response language features for a network of heterogeneous autonomous computers

Science.gov (United States)

Engelberg, N.; Shaw, C., III

1984-01-01

The design of a uniform command language to be used in a local area network of heterogeneous, autonomous nodes is considered. After examining the major characteristics of such a network, and after considering the profile of a scientist using the computers on the net as an investigative aid, a set of reasonable requirements for the command language are derived. Taking into account the possible inefficiencies in implementing a guest-layered network operating system and command language on a heterogeneous net, the authors examine command language naming, process/procedure invocation, parameter acquisition, help and response facilities, and other features found in single-node command languages, and conclude that some features may extend simply to the network case, others extend after some restrictions are imposed, and still others require modifications. In addition, it is noted that some requirements considered reasonable (user accounting reports, for example) demand further study before they can be efficiently implemented on a network of the sort described.

Basics of identification measurement technology

Science.gov (United States)

Klikushin, Yu N.; Kobenko, V. Yu; Stepanov, P. P.

2018-01-01

All available algorithms and suitable for pattern recognition do not give 100% guarantee, therefore there is a field of scientific night activity in this direction, studies are relevant. It is proposed to develop existing technologies for pattern recognition in the form of application of identification measurements. The purpose of the study is to identify the possibility of recognizing images using identification measurement technologies. In solving problems of pattern recognition, neural networks and hidden Markov models are mainly used. A fundamentally new approach to the solution of problems of pattern recognition based on the technology of identification signal measurements (IIS) is proposed. The essence of IIS technology is the quantitative evaluation of the shape of images using special tools and algorithms.

ISOLATION AND IDENTIFICATION OF FUNGI RESPONSIBLE FOR ...

African Journals Online (AJOL)

User

technique. The diseased plant leaves were taken to the laboratory for culture, isolation, and identification ... The tree is native to Asia particularly eastern India, Burma, and the Andaman ..... in Southeastern Nigeria and Biological. Control with ...

NEXCADE: perturbation analysis for complex networks.

Directory of Open Access Journals (Sweden)

Gitanjali Yadav

Full Text Available Recent advances in network theory have led to considerable progress in our understanding of complex real world systems and their behavior in response to external threats or fluctuations. Much of this research has been invigorated by demonstration of the 'robust, yet fragile' nature of cellular and large-scale systems transcending biology, sociology, and ecology, through application of the network theory to diverse interactions observed in nature such as plant-pollinator, seed-dispersal agent and host-parasite relationships. In this work, we report the development of NEXCADE, an automated and interactive program for inducing disturbances into complex systems defined by networks, focusing on the changes in global network topology and connectivity as a function of the perturbation. NEXCADE uses a graph theoretical approach to simulate perturbations in a user-defined manner, singly, in clusters, or sequentially. To demonstrate the promise it holds for broader adoption by the research community, we provide pre-simulated examples from diverse real-world networks including eukaryotic protein-protein interaction networks, fungal biochemical networks, a variety of ecological food webs in nature as well as social networks. NEXCADE not only enables network visualization at every step of the targeted attacks, but also allows risk assessment, i.e. identification of nodes critical for the robustness of the system of interest, in order to devise and implement context-based strategies for restructuring a network, or to achieve resilience against link or node failures. Source code and license for the software, designed to work on a Linux-based operating system (OS can be downloaded at http://www.nipgr.res.in/nexcade_download.html. In addition, we have developed NEXCADE as an OS-independent online web server freely available to the scientific community without any login requirement at http://www.nipgr.res.in/nexcade.html.

Communicative dynamics and the polyphony of corporate social responsibility in the network society

NARCIS (Netherlands)

Castello, I.; Morsing, M.; Schultz, F.

2013-01-01

This paper develops a media theoretical extension of the communicative view on corporate social responsibility by elaborating on the characteristics of network societies, arguing that new media increase the speed and connectivity, and lead to higher plurality and the potential polarization of

Inferring topologies of complex networks with hidden variables.

Science.gov (United States)

Wu, Xiaoqun; Wang, Weihan; Zheng, Wei Xing

2012-10-01

Network topology plays a crucial role in determining a network's intrinsic dynamics and function, thus understanding and modeling the topology of a complex network will lead to greater knowledge of its evolutionary mechanisms and to a better understanding of its behaviors. In the past few years, topology identification of complex networks has received increasing interest and wide attention. Many approaches have been developed for this purpose, including synchronization-based identification, information-theoretic methods, and intelligent optimization algorithms. However, inferring interaction patterns from observed dynamical time series is still challenging, especially in the absence of knowledge of nodal dynamics and in the presence of system noise. The purpose of this work is to present a simple and efficient approach to inferring the topologies of such complex networks. The proposed approach is called "piecewise partial Granger causality." It measures the cause-effect connections of nonlinear time series influenced by hidden variables. One commonly used testing network, two regular networks with a few additional links, and small-world networks are used to evaluate the performance and illustrate the influence of network parameters on the proposed approach. Application to experimental data further demonstrates the validity and robustness of our method.