WorldWideScience

Sample records for network modeling method

  1. Multilevel method for modeling large-scale networks.

    Energy Technology Data Exchange (ETDEWEB)

    Safro, I. M. (Mathematics and Computer Science)

    2012-02-24

    Understanding the behavior of real complex networks is of great theoretical and practical significance. It includes developing accurate artificial models whose topological properties are similar to the real networks, generating the artificial networks at different scales under special conditions, investigating a network dynamics, reconstructing missing data, predicting network response, detecting anomalies and other tasks. Network generation, reconstruction, and prediction of its future topology are central issues of this field. In this project, we address the questions related to the understanding of the network modeling, investigating its structure and properties, and generating artificial networks. Most of the modern network generation methods are based either on various random graph models (reinforced by a set of properties such as power law distribution of node degrees, graph diameter, and number of triangles) or on the principle of replicating an existing model with elements of randomization such as R-MAT generator and Kronecker product modeling. Hierarchical models operate at different levels of network hierarchy but with the same finest elements of the network. However, in many cases the methods that include randomization and replication elements on the finest relationships between network nodes and modeling that addresses the problem of preserving a set of simplified properties do not fit accurately enough the real networks. Among the unsatisfactory features are numerically inadequate results, non-stability of algorithms on real (artificial) data, that have been tested on artificial (real) data, and incorrect behavior at different scales. One reason is that randomization and replication of existing structures can create conflicts between fine and coarse scales of the real network geometry. Moreover, the randomization and satisfying of some attribute at the same time can abolish those topological attributes that have been undefined or hidden from

  2. An image segmentation method based on network clustering model

    Science.gov (United States)

    Jiao, Yang; Wu, Jianshe; Jiao, Licheng

    2018-01-01

    Network clustering phenomena are ubiquitous in nature and human society. In this paper, a method involving a network clustering model is proposed for mass segmentation in mammograms. First, the watershed transform is used to divide an image into regions, and features of the image are computed. Then a graph is constructed from the obtained regions and features. The network clustering model is applied to realize clustering of nodes in the graph. Compared with two classic methods, the algorithm based on the network clustering model performs more effectively in experiments.

  3. Systems and methods for modeling and analyzing networks

    Science.gov (United States)

    Hill, Colin C; Church, Bruce W; McDonagh, Paul D; Khalil, Iya G; Neyarapally, Thomas A; Pitluk, Zachary W

    2013-10-29

    The systems and methods described herein utilize a probabilistic modeling framework for reverse engineering an ensemble of causal models, from data and then forward simulating the ensemble of models to analyze and predict the behavior of the network. In certain embodiments, the systems and methods described herein include data-driven techniques for developing causal models for biological networks. Causal network models include computational representations of the causal relationships between independent variables such as a compound of interest and dependent variables such as measured DNA alterations, changes in mRNA, protein, and metabolites to phenotypic readouts of efficacy and toxicity.

  4. A model reduction method for biochemical reaction networks

    National Research Council Canada - National Science Library

    Rao, Shodhan; van der Schaft, Arjan; van Eunen, Karen; Bakker, Barbara; Jayawardhana, Bayu

    2014-01-01

    Background: In this paper we propose a model reduction method for biochemical reaction networks governed by a variety of reversible and irreversible enzyme kinetic rate laws, including reversible Michaelis-Menten and Hill kinetics...

  5. A model reduction method for biochemical reaction networks.

    Science.gov (United States)

    Rao, Shodhan; van der Schaft, Arjan; van Eunen, Karen; Bakker, Barbara M; Jayawardhana, Bayu

    2014-05-03

    In this paper we propose a model reduction method for biochemical reaction networks governed by a variety of reversible and irreversible enzyme kinetic rate laws, including reversible Michaelis-Menten and Hill kinetics. The method proceeds by a stepwise reduction in the number of complexes, defined as the left and right-hand sides of the reactions in the network. It is based on the Kron reduction of the weighted Laplacian matrix, which describes the graph structure of the complexes and reactions in the network. It does not rely on prior knowledge of the dynamic behaviour of the network and hence can be automated, as we demonstrate. The reduced network has fewer complexes, reactions, variables and parameters as compared to the original network, and yet the behaviour of a preselected set of significant metabolites in the reduced network resembles that of the original network. Moreover the reduced network largely retains the structure and kinetics of the original model. We apply our method to a yeast glycolysis model and a rat liver fatty acid beta-oxidation model. When the number of state variables in the yeast model is reduced from 12 to 7, the difference between metabolite concentrations in the reduced and the full model, averaged over time and species, is only 8%. Likewise, when the number of state variables in the rat-liver beta-oxidation model is reduced from 42 to 29, the difference between the reduced model and the full model is 7.5%. The method has improved our understanding of the dynamics of the two networks. We found that, contrary to the general disposition, the first few metabolites which were deleted from the network during our stepwise reduction approach, are not those with the shortest convergence times. It shows that our reduction approach performs differently from other approaches that are based on time-scale separation. The method can be used to facilitate fitting of the parameters or to embed a detailed model of interest in a more coarse

  6. A model reduction method for biochemical reaction networks

    NARCIS (Netherlands)

    Rao, Shodhan; van der Schaft, Arjan; van Eunen, Karen; Bakker, Barbara; Jayawardhana, Bayu

    2014-01-01

    Background: In this paper we propose a model reduction method for biochemical reaction networks governed by a variety of reversible and irreversible enzyme kinetic rate laws, including reversible Michaelis-Menten and Hill kinetics. The method proceeds by a stepwise reduction in the number of

  7. Modified network simulation model with token method of bus access

    Directory of Open Access Journals (Sweden)

    L.V. Stribulevich

    2013-08-01

    Full Text Available Purpose. To study the characteristics of the local network with the marker method of access to the bus its modified simulation model was developed. Methodology. Defining characteristics of the network is carried out on the developed simulation model, which is based on the state diagram-layer network station with the mechanism of processing priorities, both in steady state and in the performance of control procedures: the initiation of a logical ring, the entrance and exit of the station network with a logical ring. Findings. A simulation model, on the basis of which can be obtained the dependencies of the application the maximum waiting time in the queue for different classes of access, and the reaction time usable bandwidth on the data rate, the number of network stations, the generation rate applications, the number of frames transmitted per token holding time, frame length was developed. Originality. The technique of network simulation reflecting its work in the steady condition and during the control procedures, the mechanism of priority ranking and handling was proposed. Practical value. Defining network characteristics in the real-time systems on railway transport based on the developed simulation model.

  8. A hierarchical network modeling method for railway tunnels safety assessment

    Science.gov (United States)

    Zhou, Jin; Xu, Weixiang; Guo, Xin; Liu, Xumin

    2017-02-01

    Using network theory to model risk-related knowledge on accidents is regarded as potential very helpful in risk management. A large amount of defects detection data for railway tunnels is collected in autumn every year in China. It is extremely important to discover the regularities knowledge in database. In this paper, based on network theories and by using data mining techniques, a new method is proposed for mining risk-related regularities to support risk management in railway tunnel projects. A hierarchical network (HN) model which takes into account the tunnel structures, tunnel defects, potential failures and accidents is established. An improved Apriori algorithm is designed to rapidly and effectively mine correlations between tunnel structures and tunnel defects. Then an algorithm is presented in order to mine the risk-related regularities table (RRT) from the frequent patterns. At last, a safety assessment method is proposed by consideration of actual defects and possible risks of defects gained from the RRT. This method cannot only generate the quantitative risk results but also reveal the key defects and critical risks of defects. This paper is further development on accident causation network modeling methods which can provide guidance for specific maintenance measure.

  9. Neural node network and model, and method of teaching same

    Science.gov (United States)

    Parlos, A.G.; Atiya, A.F.; Fernandez, B.; Tsai, W.K.; Chong, K.T.

    1995-12-26

    The present invention is a fully connected feed forward network that includes at least one hidden layer. The hidden layer includes nodes in which the output of the node is fed back to that node as an input with a unit delay produced by a delay device occurring in the feedback path (local feedback). Each node within each layer also receives a delayed output (crosstalk) produced by a delay unit from all the other nodes within the same layer. The node performs a transfer function operation based on the inputs from the previous layer and the delayed outputs. The network can be implemented as analog or digital or within a general purpose processor. Two teaching methods can be used: (1) back propagation of weight calculation that includes the local feedback and the crosstalk or (2) more preferably a feed forward gradient decent which immediately follows the output computations and which also includes the local feedback and the crosstalk. Subsequent to the gradient propagation, the weights can be normalized, thereby preventing convergence to a local optimum. Education of the network can be incremental both on and off-line. An educated network is suitable for modeling and controlling dynamic nonlinear systems and time series systems and predicting the outputs as well as hidden states and parameters. The educated network can also be further educated during on-line processing. 21 figs.

  10. Implicit methods for qualitative modeling of gene regulatory networks.

    Science.gov (United States)

    Garg, Abhishek; Mohanram, Kartik; De Micheli, Giovanni; Xenarios, Ioannis

    2012-01-01

    Advancements in high-throughput technologies to measure increasingly complex biological phenomena at the genomic level are rapidly changing the face of biological research from the single-gene single-protein experimental approach to studying the behavior of a gene in the context of the entire genome (and proteome). This shift in research methodologies has resulted in a new field of network biology that deals with modeling cellular behavior in terms of network structures such as signaling pathways and gene regulatory networks. In these networks, different biological entities such as genes, proteins, and metabolites interact with each other, giving rise to a dynamical system. Even though there exists a mature field of dynamical systems theory to model such network structures, some technical challenges are unique to biology such as the inability to measure precise kinetic information on gene-gene or gene-protein interactions and the need to model increasingly large networks comprising thousands of nodes. These challenges have renewed interest in developing new computational techniques for modeling complex biological systems. This chapter presents a modeling framework based on Boolean algebra and finite-state machines that are reminiscent of the approach used for digital circuit synthesis and simulation in the field of very-large-scale integration (VLSI). The proposed formalism enables a common mathematical framework to develop computational techniques for modeling different aspects of the regulatory networks such as steady-state behavior, stochasticity, and gene perturbation experiments.

  11. DISCRETE VOLUME-ELEMENT METHOD FOR NETWORK WATER- QUALITY MODELS

    Science.gov (United States)

    An explicit dynamic water-quality modeling algorithm is developed for tracking dissolved substances in water-distribution networks. The algorithm is based on a mass-balance relation within pipes that considers both advective transport and reaction kinetics. Complete mixing of m...

  12. A unified view of generative models for networks: models, methods, opportunities, and challenges

    CERN Document Server

    Jacobs, Abigail Z

    2014-01-01

    Research on probabilistic models of networks now spans a wide variety of fields, including physics, sociology, biology, statistics, and machine learning. These efforts have produced a diverse ecology of models and methods. Despite this diversity, many of these models share a common underlying structure: pairwise interactions (edges) are generated with probability conditional on latent vertex attributes. Differences between models generally stem from different philosophical choices about how to learn from data or different empirically-motivated goals. The highly interdisciplinary nature of work on these generative models, however, has inhibited the development of a unified view of their similarities and differences. For instance, novel theoretical models and optimization techniques developed in machine learning are largely unknown within the social and biological sciences, which have instead emphasized model interpretability. Here, we describe a unified view of generative models for networks that draws togethe...

  13. Investigating the Effects of Imputation Methods for Modelling Gene Networks Using a Dynamic Bayesian Network from Gene Expression Data

    Science.gov (United States)

    CHAI, Lian En; LAW, Chow Kuan; MOHAMAD, Mohd Saberi; CHONG, Chuii Khim; CHOON, Yee Wen; DERIS, Safaai; ILLIAS, Rosli Md

    2014-01-01

    Background: Gene expression data often contain missing expression values. Therefore, several imputation methods have been applied to solve the missing values, which include k-nearest neighbour (kNN), local least squares (LLS), and Bayesian principal component analysis (BPCA). However, the effects of these imputation methods on the modelling of gene regulatory networks from gene expression data have rarely been investigated and analysed using a dynamic Bayesian network (DBN). Methods: In the present study, we separately imputed datasets of the Escherichia coli S.O.S. DNA repair pathway and the Saccharomyces cerevisiae cell cycle pathway with kNN, LLS, and BPCA, and subsequently used these to generate gene regulatory networks (GRNs) using a discrete DBN. We made comparisons on the basis of previous studies in order to select the gene network with the least error. Results: We found that BPCA and LLS performed better on larger networks (based on the S. cerevisiae dataset), whereas kNN performed better on smaller networks (based on the E. coli dataset). Conclusion: The results suggest that the performance of each imputation method is dependent on the size of the dataset, and this subsequently affects the modelling of the resultant GRNs using a DBN. In addition, on the basis of these results, a DBN has the capacity to discover potential edges, as well as display interactions, between genes. PMID:24876803

  14. A Geometric Method for Model Reduction of Biochemical Networks with Polynomial Rate Functions.

    Science.gov (United States)

    Samal, Satya Swarup; Grigoriev, Dima; Fröhlich, Holger; Weber, Andreas; Radulescu, Ovidiu

    2015-12-01

    Model reduction of biochemical networks relies on the knowledge of slow and fast variables. We provide a geometric method, based on the Newton polytope, to identify slow variables of a biochemical network with polynomial rate functions. The gist of the method is the notion of tropical equilibration that provides approximate descriptions of slow invariant manifolds. Compared to extant numerical algorithms such as the intrinsic low-dimensional manifold method, our approach is symbolic and utilizes orders of magnitude instead of precise values of the model parameters. Application of this method to a large collection of biochemical network models supports the idea that the number of dynamical variables in minimal models of cell physiology can be small, in spite of the large number of molecular regulatory actors.

  15. Comparative study of three commonly used continuous deterministic methods for modeling gene regulation networks

    Directory of Open Access Journals (Sweden)

    Dubitzky Werner

    2010-09-01

    Full Text Available Abstract Background A gene-regulatory network (GRN refers to DNA segments that interact through their RNA and protein products and thereby govern the rates at which genes are transcribed. Creating accurate dynamic models of GRNs is gaining importance in biomedical research and development. To improve our understanding of continuous deterministic modeling methods employed to construct dynamic GRN models, we have carried out a comprehensive comparative study of three commonly used systems of ordinary differential equations: The S-system (SS, artificial neural networks (ANNs, and the general rate law of transcription (GRLOT method. These were thoroughly evaluated in terms of their ability to replicate the reference models' regulatory structure and dynamic gene expression behavior under varying conditions. Results While the ANN and GRLOT methods appeared to produce robust models even when the model parameters deviated considerably from those of the reference models, SS-based models exhibited a notable loss of performance even when the parameters of the reverse-engineered models corresponded closely to those of the reference models: this is due to the high number of power terms in the SS-method, and the manner in which they are combined. In cross-method reverse-engineering experiments the different characteristics, biases and idiosynchracies of the methods were revealed. Based on limited training data, with only one experimental condition, all methods produced dynamic models that were able to reproduce the training data accurately. However, an accurate reproduction of regulatory network features was only possible with training data originating from multiple experiments under varying conditions. Conclusions The studied GRN modeling methods produced dynamic GRN models exhibiting marked differences in their ability to replicate the reference models' structure and behavior. Our results suggest that care should be taking when a method is chosen for a

  16. A Comparison of Neural Networks and Fuzzy Logic Methods for Process Modeling

    Science.gov (United States)

    Cios, Krzysztof J.; Sala, Dorel M.; Berke, Laszlo

    1996-01-01

    The goal of this work was to analyze the potential of neural networks and fuzzy logic methods to develop approximate response surfaces as process modeling, that is for mapping of input into output. Structural response was chosen as an example. Each of the many methods surveyed are explained and the results are presented. Future research directions are also discussed.

  17. Appplication of statistical mechanical methods to the modeling of social networks

    Science.gov (United States)

    Strathman, Anthony Robert

    With the recent availability of large-scale social data sets, social networks have become open to quantitative analysis via the methods of statistical physics. We examine the statistical properties of a real large-scale social network, generated from cellular phone call-trace logs. We find this network, like many other social networks to be assortative (r = 0.31) and clustered (i.e., strongly transitive, C = 0.21). We measure fluctuation scaling to identify the presence of internal structure in the network and find that structural inhomogeneity effectively disappears at the scale of a few hundred nodes, though there is no sharp cutoff. We introduce an agent-based model of social behavior, designed to model the formation and dissolution of social ties. The model is a modified Metropolis algorithm containing agents operating under the basic sociological constraints of reciprocity, communication need and transitivity. The model introduces the concept of a social temperature. We go on to show that this simple model reproduces the global statistical network features (incl. assortativity, connected fraction, mean degree, clustering, and mean shortest path length) of the real network data and undergoes two phase transitions, one being from a "gas" to a "liquid" state and the second from a liquid to a glassy state as function of this social temperature.

  18. Bayesian Computation Methods for Inferring Regulatory Network Models Using Biomedical Data.

    Science.gov (United States)

    Tian, Tianhai

    2016-01-01

    The rapid advancement of high-throughput technologies provides huge amounts of information for gene expression and protein activity in the genome-wide scale. The availability of genomics, transcriptomics, proteomics, and metabolomics dataset gives an unprecedented opportunity to study detailed molecular regulations that is very important to precision medicine. However, it is still a significant challenge to design effective and efficient method to infer the network structure and dynamic property of regulatory networks. In recent years a number of computing methods have been designed to explore the regulatory mechanisms as well as estimate unknown model parameters. Among them, the Bayesian inference method can combine both prior knowledge and experimental data to generate updated information regarding the regulatory mechanisms. This chapter gives a brief review for Bayesian statistical methods that are used to infer the network structure and estimate model parameters based on experimental data.

  19. Modeling Nanoscale FinFET Performance by a Neural Network Method

    Directory of Open Access Journals (Sweden)

    Jin He

    2017-07-01

    Full Text Available This paper presents a neural network method to model nanometer FinFET performance. The principle of this method is firstly introduced and its application in modeling DC and conductance characteristics of nanoscale FinFET transistor is demonstrated in detail. It is shown that this method does not need parameter extraction routine while its prediction of the transistor performance has a small relative error within 1 % compared with measured data, thus this new method is as accurate as the physics based surface potential model.

  20. A Cut Cell Method for Simulating Spatial Models of Biochemical Reaction Networks in Arbitrary Geometries.

    Science.gov (United States)

    Strychalski, Wanda; Adalsteinsson, David; Elston, Timothy C

    2010-01-01

    Cells use signaling networks consisting of multiple interacting proteins to respond to changes in their environment. In many situations, such as chemotaxis, spatial and temporal information must be transmitted through the network. Recent computational studies have emphasized the importance of cellular geometry in signal transduction, but have been limited in their ability to accurately represent complex cell morphologies. We present a finite volume method that addresses this problem. Our method uses Cartesian cut cells and is second order in space and time. We use our method to simulate several models of signaling systems in realistic cell morphologies obtained from live cell images and examine the effects of geometry on signal transduction.

  1. An Efficient Neural Network Based Modeling Method for Automotive EMC Simulation

    Science.gov (United States)

    Frank, Florian; Weigel, Robert

    2011-09-01

    This paper presents a newly developed methodology for VHDL-AMS model integration into SPICE-based EMC simulations. To this end the VHDL-AMS model, which is available in a compiled version only, is characterized under typical loading conditions, and afterwards a neural network based technique is applied to convert characteristic voltage and current data into an equivalent circuit in SPICE syntax. After the explanation of the whole method and the presentation of a newly developed switched state space dynamic neural network model, the entire analysis process is demonstrated using a typical application from automotive industry.

  2. Application of artificial neural networks for response surface modelling in HPLC method development

    Directory of Open Access Journals (Sweden)

    Mohamed A. Korany

    2012-01-01

    Full Text Available This paper discusses the usefulness of artificial neural networks (ANNs for response surface modelling in HPLC method development. In this study, the combined effect of pH and mobile phase composition on the reversed-phase liquid chromatographic behaviour of a mixture of salbutamol (SAL and guaiphenesin (GUA, combination I, and a mixture of ascorbic acid (ASC, paracetamol (PAR and guaiphenesin (GUA, combination II, was investigated. The results were compared with those produced using multiple regression (REG analysis. To examine the respective predictive power of the regression model and the neural network model, experimental and predicted response factor values, mean of squares error (MSE, average error percentage (Er%, and coefficients of correlation (r were compared. It was clear that the best networks were able to predict the experimental responses more accurately than the multiple regression analysis.

  3. The Situation Awareness Weighted Network (SAWN) model and method: Theory and application.

    Science.gov (United States)

    Kalloniatis, Alexander; Ali, Irena; Neville, Timothy; La, Phuong; Macleod, Iain; Zuparic, Mathew; Kohn, Elizabeth

    2017-05-01

    We introduce a novel model and associated data collection method to examine how a distributed organisation of military staff who feed a Common Operating Picture (COP) generates Situation Awareness (SA), a critical component in organisational performance. The proposed empirically derived Situation Awareness Weighted Network (SAWN) model draws on two scientific models of SA, by Endsley involving perception, comprehension and projection, and by Stanton et al. positing that SA exists across a social and semantic network of people and information objects in activities connected across a set of tasks. The output of SAWN is a representation as a weighted semi-bipartite network of the interaction between people ('human nodes') and information artefacts such as documents and system displays ('product nodes'); link weights represent the Endsley levels of SA that individuals acquire from or provide to information objects and other individuals. The SAWN method is illustrated with aggregated empirical data from a case study of Australian military staff undertaking their work during two very different scenarios, during steady-state operations and in a crisis threat context. A key outcome of analysis of the weighted networks is that we are able to quantify flow of SA through an organisation as staff seek to "value-add" in the conduct of their work. Crown Copyright © 2017. Published by Elsevier Ltd. All rights reserved.

  4. Stories in Networks and Networks in Stories: A Tri-Modal Model for Mixed-Methods Social Network Research on Teachers

    Science.gov (United States)

    Baker-Doyle, Kira J.

    2015-01-01

    Social network research on teachers and schools has risen exponentially in recent years as an innovative method to reveal the role of social networks in education. However, scholars are still exploring ways to incorporate traditional quantitative methods of Social Network Analysis (SNA) with qualitative approaches to social network research. This…

  5. Opinion Impact Models and Opinion Consensus Methods in Ad Hoc Tactical Social Networks

    Directory of Open Access Journals (Sweden)

    Demin Li

    2013-01-01

    Full Text Available Ad hoc social networks are special social networks, such as ad hoc tactical social networks, ad hoc firefighter social networks, and ad hoc vehicular social networks. The social networks possess both the properties of ad hoc network and social network. One of the challenge problems in ad hoc social networks is opinion impact and consensus, and the opinion impact plays a key role for information fusion and decision support in ad hoc social networks. In this paper, consider the impact of physical and logical distance on the opinions of individuals or nodes in heterogeneous social networks; we present a general opinion impact model, discuss the local and global opinion impact models in detail, and point out the relationship between the local opinion impact model and the global opinion impact model. For understanding the opinion impact models easily, we use the general opinion impact model to ad hoc tactical social networks and discuss the opinion impact and opinion consensus for ad hoc tactical social networks in the end.

  6. Modeling and Optimization Technique of a Chilled Water AHU Using Artificial Neural Network Methods

    Science.gov (United States)

    Talib, Rand Issa

    Heating, ventilation, and air conditioning (HVAC) systems are widely used in buildings to provide occupants with conditioned air and acceptable indoor air quality. The chilled water system is one Heating, ventilation, and air conditioning systems are widely used in buildings to provide occupants with conditioned air and acceptable indoor air quality. The design of these systems constitutes a large impact on the energy usage and operating cost of buildings they serve. The ability to accurately predict the performance of these systems is integral to designing more energy efficient and sustainable building systems. In this thesis the modeling of a chilled water air handling units using Artificial Neural Networks model is proposed. The Artificial neural network model was built using four inputs (1) Chilled water temperature (CHWT), (2) Chilled water valve position (CWVLV), (3) Mixed air temperature (MAT), and (4) Supply air flow (SAF). The output of the model is to predict supply air temperature. Moreover, another model was constructed to predict the fan power as a function of the fan air flow and fan speed. The data that were collected from a real building in a span of three months were processed. The ANN model was trained using the measured data and different model structure were then tested with various time delay, feedback time, and number of neurons to determine the best structure. In addition, an optimization method is developed to automate the process of finding the best model structure that can produce the best accurate prediction against the actual data. The Coefficient of variances which was used to determine the error value was recorded to be as low as 1.22 for the best model structure. The obtained results validate the Artificial neural network model created as an accurate tool for predicting the performance of a chilled water air handling unit.

  7. Comparison of Iterative Methods for Computing the Pressure Field in a Dynamic Network Model

    DEFF Research Database (Denmark)

    Mogensen, Kristian; Stenby, Erling Halfdan; Banerjee, Srilekha

    1999-01-01

    In dynamic network models, the pressure map (the pressure in the pores) must be evaluated at each time step. This calculation involves the solution of a large number of nonlinear algebraic systems of equations and accounts for more than 80 of the total CPU-time. Each nonlinear system requires...... at least the partial solution of a sequence of linear systems. We present a comparative study of iterative methods for solving these systems, where we apply both standard routines from the public domain package ITPACK 2C and our own routines tailored to the network problem. The conjugate gradient method......, preconditioned by symmetric successive overrelaxation, was found to be consistently faster and more robust than the other solvers tested. In particular, it was found to be much superior to the successive overrelaxation technique currently used by many researchers....

  8. Models of educational institutions' networking

    OpenAIRE

    Shilova Olga Nikolaevna

    2015-01-01

    The importance of educational institutions' networking in modern sociocultural conditions and a definition of networking in education are presented in the article. The results of research levels, methods and models of educational institutions' networking are presented and substantially disclosed.

  9. Brain Network Modelling

    DEFF Research Database (Denmark)

    Andersen, Kasper Winther

    Three main topics are presented in this thesis. The first and largest topic concerns network modelling of functional Magnetic Resonance Imaging (fMRI) and Diffusion Weighted Imaging (DWI). In particular nonparametric Bayesian methods are used to model brain networks derived from resting state f...... for their ability to reproduce node clustering and predict unseen data. Comparing the models on whole brain networks, BCD and IRM showed better reproducibility and predictability than IDM, suggesting that resting state networks exhibit community structure. This also points to the importance of using models, which...... allow for complex interactions between all pairs of clusters. In addition, it is demonstrated how the IRM can be used for segmenting brain structures into functionally coherent clusters. A new nonparametric Bayesian network model is presented. The model builds upon the IRM and can be used to infer...

  10. Techniques for Modelling Network Security

    OpenAIRE

    Lech Gulbinovič

    2012-01-01

    The article compares modelling techniques for network security, including the theory of probability, Markov processes, Petri networks and application of stochastic activity networks. The paper introduces the advantages and disadvantages of the above proposed methods and accepts the method of modelling the network of stochastic activity as one of the most relevant. The stochastic activity network allows modelling the behaviour of the dynamic system where the theory of probability is inappropri...

  11. A neural network construction method for surrogate modeling of physics-based analysis

    Science.gov (United States)

    Sung, Woong Je

    In this thesis existing methodologies related to the developmental methods of neural networks have been surveyed and their approaches to network sizing and structuring are carefully observed. This literature review covers the constructive methods, the pruning methods, and the evolutionary methods and questions about the basic assumption intrinsic to the conventional neural network learning paradigm, which is primarily devoted to optimization of connection weights (or synaptic strengths) for the pre-determined connection structure of the network. The main research hypothesis governing this thesis is that, without breaking a prevailing dichotomy between weights and connectivity of the network during learning phase, the efficient design of a task-specific neural network is hard to achieve because, as long as connectivity and weights are searched by separate means, a structural optimization of the neural network requires either repetitive re-training procedures or computationally expensive topological meta-search cycles. The main contribution of this thesis is designing and testing a novel learning mechanism which efficiently learns not only weight parameters but also connection structure from a given training data set, and positioning this learning mechanism within the surrogate modeling practice. In this work, a simple and straightforward extension to the conventional error Back-Propagation (BP) algorithm has been formulated to enable a simultaneous learning for both connectivity and weights of the Generalized Multilayer Perceptron (GMLP) in supervised learning tasks. A particular objective is to achieve a task-specific network having reasonable generalization performance with a minimal training time. The dichotomy between architectural design and weight optimization is reconciled by a mechanism establishing a new connection for a neuron pair which has potentially higher error-gradient than one of the existing connections. Interpreting an instance of the absence of

  12. Integer programming-based method for designing synthetic metabolic networks by Minimum Reaction Insertion in a Boolean model.

    Science.gov (United States)

    Lu, Wei; Tamura, Takeyuki; Song, Jiangning; Akutsu, Tatsuya

    2014-01-01

    In this paper, we consider the Minimum Reaction Insertion (MRI) problem for finding the minimum number of additional reactions from a reference metabolic network to a host metabolic network so that a target compound becomes producible in the revised host metabolic network in a Boolean model. Although a similar problem for larger networks is solvable in a flux balance analysis (FBA)-based model, the solution of the FBA-based model tends to include more reactions than that of the Boolean model. However, solving MRI using the Boolean model is computationally more expensive than using the FBA-based model since the Boolean model needs more integer variables. Therefore, in this study, to solve MRI for larger networks in the Boolean model, we have developed an efficient Integer Programming formalization method in which the number of integer variables is reduced by the notion of feedback vertex set and minimal valid assignment. As a result of computer experiments conducted using the data of metabolic networks of E. coli and reference networks downloaded from the Kyoto Encyclopedia of Genes and Genomes (KEGG) database, we have found that the developed method can appropriately solve MRI in the Boolean model and is applicable to large scale-networks for which an exhaustive search does not work. We have also compared the developed method with the existing connectivity-based methods and FBA-based methods, and show the difference between the solutions of our method and the existing methods. A theoretical analysis of MRI is also conducted, and the NP-completeness of MRI is proved in the Boolean model. Our developed software is available at "http://sunflower.kuicr.kyoto-u.ac.jp/~rogi/minRect/minRect.html."

  13. MODELS AND METHODS FOR LOGISTICS HUB LOCATION: A REVIEW TOWARDS TRANSPORTATION NETWORKS DESIGN

    Directory of Open Access Journals (Sweden)

    Carolina Luisa dos Santos Vieira

    Full Text Available ABSTRACT Logistics hubs affect the distribution patterns in transportation networks since they are flow-concentrating structures. Indeed, the efficient moving of goods throughout supply chains depends on the design of such networks. This paper presents a literature review on the logistics hub location problem, providing an outline of modeling approaches, solving techniques, and their applicability to such context. Two categories of models were identified. While multi-criteria models may seem best suited to find optimal locations, they do not allow an assessment of the impact of new hubs on goods flow and on the transportation network. On the other hand, single-criterion models, which provide location and flow allocation information, adopt network simplifications that hinder an accurate representation of the relationshipbetween origins, destinations, and hubs. In view of these limitations we propose future research directions for addressing real challenges of logistics hubs location regarding transportation networks design.

  14. Pore Network Modeling: Alternative Methods to Account for Trapping and Spatial Correlation

    KAUST Repository

    De La Garza Martinez, Pablo

    2016-05-01

    Pore network models have served as a predictive tool for soil and rock properties with a broad range of applications, particularly in oil recovery, geothermal energy from underground reservoirs, and pollutant transport in soils and aquifers [39]. They rely on the representation of the void space within porous materials as a network of interconnected pores with idealised geometries. Typically, a two-phase flow simulation of a drainage (or imbibition) process is employed, and by averaging the physical properties at the pore scale, macroscopic parameters such as capillary pressure and relative permeability can be estimated. One of the most demanding tasks in these models is to include the possibility of fluids to remain trapped inside the pore space. In this work I proposed a trapping rule which uses the information of neighboring pores instead of a search algorithm. This approximation reduces the simulation time significantly and does not perturb the accuracy of results. Additionally, I included spatial correlation to generate the pore sizes using a matrix decomposition method. Results show higher relative permeabilities and smaller values for irreducible saturation, which emphasizes the effects of ignoring the intrinsic correlation seen in pore sizes from actual porous media. Finally, I implemented the algorithm from Raoof et al. (2010) [38] to generate the topology of a Fontainebleau sandstone by solving an optimization problem using the steepest descent algorithm with a stochastic approximation for the gradient. A drainage simulation is performed on this representative network and relative permeability is compared with published results. The limitations of this algorithm are discussed and other methods are suggested to create a more faithful representation of the pore space.

  15. Study on Maritime Logistics Warehousing Center Model and Precision Marketing Strategy Optimization Based on Fuzzy Method and Neural Network Model

    Directory of Open Access Journals (Sweden)

    Xiao Kefeng

    2017-08-01

    Full Text Available The bulk commodity, different with the retail goods, has a uniqueness in the location selection, the chosen of transportation program and the decision objectives. How to make optimal decisions in the facility location, requirement distribution, shipping methods and the route selection and establish an effective distribution system to reduce the cost has become a burning issue for the e-commerce logistics, which is worthy to be deeply and systematically solved. In this paper, Logistics warehousing center model and precision marketing strategy optimization based on fuzzy method and neural network model is proposed to solve this problem. In addition, we have designed principles of the fuzzy method and neural network model to solve the proposed model because of its complexity. Finally, we have solved numerous examples to compare the results of lingo and Matlab, we use Matlab and lingo just to check the result and to illustrate the numerical example, we can find from the result, the multi-objective model increases logistics costs and improves the efficiency of distribution time.

  16. Agents, Individuals, and Networks: Modeling Methods to Inform Natural Resource Management in Regional Landscapes

    Directory of Open Access Journals (Sweden)

    Lael Parrott

    2012-09-01

    Full Text Available Landscapes are complex systems. Landscape dynamics are the result of multiple interacting biophysical and socioeconomic processes that are linked across a broad range of spatial, temporal, and organizational scales. Understanding and describing landscape dynamics poses enormous challenges and demands the use of new multiscale approaches to modeling. In this synthesis article, we present three regional systems - i.e., a forest system, a marine system, and an agricultural system - and describe how hybrid, bottom-up modeling of these systems can be used to represent linkages across scales and between subsystems. Through the use of these three examples, we describe how modeling can be used to simulate emergent system responses to different conservation policy and management scenarios from the bottom up, thereby increasing our understanding of important drivers and feedback loops within a landscape. The first case study involves the use of an individual-based modeling approach to simulate the effects of forest harvesting on the movement patterns of large mammals in Canada's boreal forest and the resulting emergent population dynamics. This model is being used to inform forest harvesting and management guidelines. The second case study combines individual and agent-based approaches to simulate the dynamics of individual boats and whales in a marine park. This model is being used to inform decision-makers on how to mitigate the impacts of maritime traffic on whales in the Saint Lawrence Estuary in eastern Canada. The third example is a case study of biodiversity conservation efforts on the Eyre Peninsula, South Australia. In this example, the social-ecological system is represented as a complex network of interacting components. Methods of network analysis can be used to explore the emergent responses of the system to changes in the network structure or configuration, thus informing managers about the resilience of the system. These three examples

  17. Collaborative networks: Reference modeling

    NARCIS (Netherlands)

    Camarinha-Matos, L.M.; Afsarmanesh, H.

    2008-01-01

    Collaborative Networks: Reference Modeling works to establish a theoretical foundation for Collaborative Networks. Particular emphasis is put on modeling multiple facets of collaborative networks and establishing a comprehensive modeling framework that captures and structures diverse perspectives of

  18. Experimental and computational methods for the analysis and modeling of signaling networks.

    Science.gov (United States)

    Gherardini, Pier Federico; Helmer-Citterich, Manuela

    2013-03-25

    External cues are processed and integrated by signal transduction networks that drive appropriate cellular responses. Characterizing these programs, as well as how their deregulation leads to disease, is crucial for our understanding of cell biology. The past ten years have witnessed a gradual increase in the number of molecular parameters that can be simultaneously measured in a sample. Moreover our capacity to handle multiple samples in parallel has expanded, thus allowing a deeper profiling of cellular states under diverse experimental conditions. These technological advances have been complemented by the development of computational methods aimed at mining, analyzing and modeling these data. In this review we give a general overview of the most important experimental and computational techniques used in the field and describe several interesting application of these methodologies. We conclude by highlighting the issues that we think will keep researchers in the field busy in the next few years. Copyright © 2012 Elsevier B.V. All rights reserved.

  19. Method of construction of rational corporate network using the simulation model

    Directory of Open Access Journals (Sweden)

    V.N. Pakhomovа

    2013-06-01

    Full Text Available Purpose. Search for new options of the transition from Ethernet technology. Methodology. Physical structuring of the Fast Ethernet network based on hubs and logical structuring of Fast Ethernet network using commutators. Organization of VLAN based on ports grouping and in accordance with the standard IEEE 802 .1Q. Findings. The options for improving of the Ethernet network are proposed. According to the Fast Ethernet and VLAN technologies on the simulation models in packages NetCraker and Cisco Packet Traker respectively. Origiality. The technique of designing of local area network using the VLAN technology is proposed. Practical value.Each of the options of "Dniprozaliznychproekt" network improving has its advantages. Transition from the Ethernet to Fast Ethernet technology is simple and economical, it requires only one commutator, when the VLAN organization requires at least two. VLAN technology, however, has the following advantages: reducing the load on the network, isolation of the broadcast traffic, change of the logical network structure without changing its physical structure, improving the network security. The transition from Ethernet to the VLAN technology allows you to separate the physical topology from the logical one, and the format of the ÌEEE 802.1Q standard frames allows you to simplify the process of virtual networks implementation to enterprises.

  20. COMPARISON OF VIRTUAL FIELDS METHOD, PARALLEL NETWORK MATERIAL MODEL AND FINITE ELEMENT UPDATING FOR MATERIAL PARAMETER DETERMINATION

    Directory of Open Access Journals (Sweden)

    Florian Dirisamer

    2016-12-01

    Full Text Available Extracting material parameters from test specimens is very intensive in terms of cost and time, especially for viscoelastic material models, where the parameters are dependent of time (frequency, temperature and environmental conditions. Therefore, three different methods for extracting these parameters were tested. Firstly, digital image correlation combined with virtual fields method, secondly, a parallel network material model and thirdly, finite element updating. These three methods are shown and the results are compared in terms of accuracy and experimental effort.

  1. Establishment of a Standard Analytical Model of Distribution Network with Distributed Generators and Development of Multi Evaluation Method for Network Configuration Candidates

    Science.gov (United States)

    Hayashi, Yasuhiro; Kawasaki, Shoji; Matsuki, Junya; Matsuda, Hiroaki; Sakai, Shigekazu; Miyazaki, Teru; Kobayashi, Naoki

    Since a distribution network has many sectionalizing switches, there are huge radial network configuration candidates by states (opened or closed) of sectionalizing switches. Recently, the total number of distributed generation such as photovoltaic generation system and wind turbine generation system connected to the distribution network is drastically increased. The distribution network with the distributed generators must be operated keeping reliability of power supply and power quality. Therefore, the many configurations of the distribution network with the distributed generators must be evaluated multiply from various viewpoints such as distribution loss, total harmonic distortion, voltage imbalance and so on. In this paper, the authors propose a multi evaluation method to evaluate the distribution network configuration candidates satisfied with constraints of voltage and line current limit from three viewpoints ((1) distribution loss, (2) total harmonic distortion and (3) voltage imbalance). After establishing a standard analytical model of three sectionalized and three connected distribution network configuration with distributed generators based on the practical data, the multi evaluation for the established model is carried out by using the proposed method based on EMTP (Electro-Magnetic Transients Programs).

  2. A Least Square Method Based Model for Identifying Protein Complexes in Protein-Protein Interaction Network

    Directory of Open Access Journals (Sweden)

    Qiguo Dai

    2014-01-01

    Full Text Available Protein complex formed by a group of physical interacting proteins plays a crucial role in cell activities. Great effort has been made to computationally identify protein complexes from protein-protein interaction (PPI network. However, the accuracy of the prediction is still far from being satisfactory, because the topological structures of protein complexes in the PPI network are too complicated. This paper proposes a novel optimization framework to detect complexes from PPI network, named PLSMC. The method is on the basis of the fact that if two proteins are in a common complex, they are likely to be interacting. PLSMC employs this relation to determine complexes by a penalized least squares method. PLSMC is applied to several public yeast PPI networks, and compared with several state-of-the-art methods. The results indicate that PLSMC outperforms other methods. In particular, complexes predicted by PLSMC can match known complexes with a higher accuracy than other methods. Furthermore, the predicted complexes have high functional homogeneity.

  3. A multiscale modelling of bone ultrastructure elastic proprieties using finite elements simulation and neural network method.

    Science.gov (United States)

    Barkaoui, Abdelwahed; Tlili, Brahim; Vercher-Martínez, Ana; Hambli, Ridha

    2016-10-01

    Bone is a living material with a complex hierarchical structure which entails exceptional mechanical properties, including high fracture toughness, specific stiffness and strength. Bone tissue is essentially composed by two phases distributed in approximately 30-70%: an organic phase (mainly type I collagen and cells) and an inorganic phase (hydroxyapatite-HA-and water). The nanostructure of bone can be represented throughout three scale levels where different repetitive structural units or building blocks are found: at the first level, collagen molecules are arranged in a pentameric structure where mineral crystals grow in specific sites. This primary bone structure constitutes the mineralized collagen microfibril. A structural organization of inter-digitating microfibrils forms the mineralized collagen fibril which represents the second scale level. The third scale level corresponds to the mineralized collagen fibre which is composed by the binding of fibrils. The hierarchical nature of the bone tissue is largely responsible of their significant mechanical properties; consequently, this is a current outstanding research topic. Scarce works in literature correlates the elastic properties in the three scale levels at the bone nanoscale. The main goal of this work is to estimate the elastic properties of the bone tissue in a multiscale approach including a sensitivity analysis of the elastic behaviour at each length scale. This proposal is achieved by means of a novel hybrid multiscale modelling that involves neural network (NN) computations and finite elements method (FEM) analysis. The elastic properties are estimated using a neural network simulation that previously has been trained with the database results of the finite element models. In the results of this work, parametric analysis and averaged elastic constants for each length scale are provided. Likewise, the influence of the elastic constants of the tissue constituents is also depicted. Results highlight

  4. Opinion Impact Models and Opinion Consensus Methods in Ad Hoc Tactical Social Networks

    OpenAIRE

    Demin Li; Jie Zhou; Jingjuan Zhu; Jiacun Wang

    2013-01-01

    Ad hoc social networks are special social networks, such as ad hoc tactical social networks, ad hoc firefighter social networks, and ad hoc vehicular social networks. The social networks possess both the properties of ad hoc network and social network. One of the challenge problems in ad hoc social networks is opinion impact and consensus, and the opinion impact plays a key role for information fusion and decision support in ad hoc social networks. In this paper, consider the impact of physic...

  5. High order numerical methods for networks of hyperbolic conservation laws coupled with ODEs and lumped parameter models

    Science.gov (United States)

    Borsche, Raul; Kall, Jochen

    2016-12-01

    In this paper we construct high order finite volume schemes on networks of hyperbolic conservation laws with coupling conditions involving ODEs. We consider two generalized Riemann solvers at the junction, one of Toro-Castro type and a solver of Harten, Enquist, Osher, Chakravarthy type. The ODE is treated with a Taylor method or an explicit Runge-Kutta scheme, respectively. Both resulting high order methods conserve quantities exactly if the conservation is part of the coupling conditions. Furthermore we present a technique to incorporate lumped parameter models, which arise from simplifying parts of a network. The high order convergence and the robust capturing of shocks are investigated numerically in several test cases.

  6. Determining geometric error model parameters of a terrestrial laser scanner through two-face, length-consistency, and network methods

    Science.gov (United States)

    Wang, Ling; Muralikrishnan, Bala; Rachakonda, Prem; Sawyer, Daniel

    2017-06-01

    Terrestrial laser scanners (TLS) are increasingly used in large-scale manufacturing and assembly where required measurement uncertainties are on the order of few tenths of a millimeter or smaller. In order to meet these stringent requirements, systematic errors within a TLS are compensated in situ through self-calibration. In the network method of self-calibration, numerous targets distributed in the work-volume are measured from multiple locations with the TLS to determine the parameters of the TLS error model. In this paper, we propose two new self-calibration methods, the two-face method and the length-consistency method. The length-consistency method is proposed as a more efficient way of realizing the network method where the length between any pair of targets from multiple TLS positions are compared to determine TLS model parameters. The two-face method is a two-step process. In the first step, many model parameters are determined directly from the difference between front-face and back-face measurements of targets distributed in the work volume. In the second step, all remaining model parameters are determined through the length-consistency method. We compare the two-face method, the length-consistency method, and the network method in terms of the uncertainties in the model parameters, and demonstrate the validity of our techniques using a calibrated scale bar and front-face back-face target measurements. The clear advantage of these self-calibration methods is that a reference instrument or calibrated artifacts are not required, thus significantly lowering the cost involved in the calibration process.

  7. Optimal convergence of discontinuous Galerkin methods for continuum modeling of supply chain networks

    KAUST Repository

    Zhang, Shuhua

    2014-09-01

    A discontinuous Galerkin method is considered to simulate materials flow in a supply chain network problem which is governed by a system of conservation laws. By means of a novel interpolation and superclose analysis technique, the optimal and superconvergence error estimates are established under two physically meaningful assumptions on the connectivity matrix. Numerical examples are presented to validate the theoretical results. © 2014 Elsevier Ltd. All rights reserved.

  8. THE EFFECT OF DECOMPOSITION METHOD AS DATA PREPROCESSING ON NEURAL NETWORKS MODEL FOR FORECASTING TREND AND SEASONAL TIME SERIES

    Directory of Open Access Journals (Sweden)

    Subanar Subanar

    2006-01-01

    Full Text Available Recently, one of the central topics for the neural networks (NN community is the issue of data preprocessing on the use of NN. In this paper, we will investigate this topic particularly on the effect of Decomposition method as data processing and the use of NN for modeling effectively time series with both trend and seasonal patterns. Limited empirical studies on seasonal time series forecasting with neural networks show that some find neural networks are able to model seasonality directly and prior deseasonalization is not necessary, and others conclude just the opposite. In this research, we study particularly on the effectiveness of data preprocessing, including detrending and deseasonalization by applying Decomposition method on NN modeling and forecasting performance. We use two kinds of data, simulation and real data. Simulation data are examined on multiplicative of trend and seasonality patterns. The results are compared to those obtained from the classical time series model. Our result shows that a combination of detrending and deseasonalization by applying Decomposition method is the effective data preprocessing on the use of NN for forecasting trend and seasonal time series.

  9. Quantitative Evaluation of an Air-monitoring Network Using Atmospheric Transport Modeling and Frequency of Detection Methods.

    Science.gov (United States)

    Rood, Arthur S; Sondrup, A Jeffrey; Ritter, Paul D

    2016-04-01

    A methodology has been developed to quantify the performance of an air-monitoring network in terms of frequency of detection. Frequency of detection is defined as the fraction of "events" that result in a detection at either a single sampler or network of samplers. An "event" is defined as a release to the atmosphere of a specified amount of activity over a finite duration that begins on a given day and hour of the year. The methodology uses an atmospheric transport model to predict air concentrations of radionuclides at the samplers for a given release time and duration. Another metric of interest determined by the methodology is called the network intensity, which is defined as the fraction of samplers in the network that have a positive detection for a given event. The frequency of detection methodology allows for evaluation of short-term releases that include effects of short-term variability in meteorological conditions. The methodology was tested using the U.S. Department of Energy Idaho National Laboratory Site ambient air-monitoring network consisting of 37 low-volume air samplers in 31 different locations covering a 17,630 km region. Releases from six major facilities distributed over an area of 1,435 km were modeled and included three stack sources and eight ground-level sources. A Lagrangian Puff air dispersion model (CALPUFF) was used to model atmospheric transport. The model was validated using historical Sb releases and measurements. Relevant 1-wk release quantities from each emission source were calculated based on a dose of 1.9×10 mSv at a public receptor (0.01 mSv assuming release persists over a year). Important radionuclides were Am, Cs, Pu, Pu, Sr, and tritium. Results show the detection frequency was over 97.5% for the entire network considering all sources and radionuclides. Network intensity results ranged from 3.75% to 62.7%. Evaluation of individual samplers indicated some samplers were poorly located and added little to the overall

  10. Quality of Service Regulation in Secure Body Area Networks: System Modeling and Adaptation Methods

    Directory of Open Access Journals (Sweden)

    Bui FrancisMinhthang

    2011-01-01

    Full Text Available Body area network (BAN has recently emerged as a promising platform for future research and development. The applications are myriad and encompass a wide range of scenarios, including those in not only medicine but also in everyday activities. However, while the applicability and necessity of BAN have been firmly assured, the underlying technological platforms to practically realize these networks are still in the developmental stages, with many outstanding key problems to be addressed. Due to their envisioned domains of applicability, an important problem in BANs is security and user privacy. Providing security in a practical BAN configuration is challenging due to various conflicting resource constraints. In this paper, the focus is to study signal processing methods for delivering secure communications in BANs, particularly when using biometrics. An optimization framework is presented to aggregate various methods, enabling overall quality of service (QoS regulation in an integrated and flexible manner. In particular, this resource allocation approach is shown to be effective in managing security solutions for BANs.

  11. Optimisation of groundwater level monitoring networks using geostatistical modelling based on the Spartan family variogram and a genetic algorithm method

    Science.gov (United States)

    Parasyris, Antonios E.; Spanoudaki, Katerina; Kampanis, Nikolaos A.

    2016-04-01

    Groundwater level monitoring networks provide essential information for water resources management, especially in areas with significant groundwater exploitation for agricultural and domestic use. Given the high maintenance costs of these networks, development of tools, which can be used by regulators for efficient network design is essential. In this work, a monitoring network optimisation tool is presented. The network optimisation tool couples geostatistical modelling based on the Spartan family variogram with a genetic algorithm method and is applied to Mires basin in Crete, Greece, an area of high socioeconomic and agricultural interest, which suffers from groundwater overexploitation leading to a dramatic decrease of groundwater levels. The purpose of the optimisation tool is to determine which wells to exclude from the monitoring network because they add little or no beneficial information to groundwater level mapping of the area. Unlike previous relevant investigations, the network optimisation tool presented here uses Ordinary Kriging with the recently-established non-differentiable Spartan variogram for groundwater level mapping, which, based on a previous geostatistical study in the area leads to optimal groundwater level mapping. Seventy boreholes operate in the area for groundwater abstraction and water level monitoring. The Spartan variogram gives overall the most accurate groundwater level estimates followed closely by the power-law model. The geostatistical model is coupled to an integer genetic algorithm method programmed in MATLAB 2015a. The algorithm is used to find the set of wells whose removal leads to the minimum error between the original water level mapping using all the available wells in the network and the groundwater level mapping using the reduced well network (error is defined as the 2-norm of the difference between the original mapping matrix with 70 wells and the mapping matrix of the reduced well network). The solution to the

  12. Methods for Analyzing Pipe Networks

    DEFF Research Database (Denmark)

    Nielsen, Hans Bruun

    1989-01-01

    The governing equations for a general network are first set up and then reformulated in terms of matrices. This is developed to show that the choice of model for the flow equations is essential for the behavior of the iterative method used to solve the problem. It is shown that it is better to fo...... demonstrated that this method offers good starting values for a Newton-Raphson iteration.......The governing equations for a general network are first set up and then reformulated in terms of matrices. This is developed to show that the choice of model for the flow equations is essential for the behavior of the iterative method used to solve the problem. It is shown that it is better...... to formulate the flow equations in terms of pipe discharges than in terms of energy heads. The behavior of some iterative methods is compared in the initial phase with large errors. It is explained why the linear theory method oscillates when the iteration gets close to the solution, and it is further...

  13. Modeling daily discharge responses of a large karstic aquifer using soft computing methods: Artificial neural network and neuro-fuzzy

    Science.gov (United States)

    Kurtulus, Bedri; Razack, Moumtaz

    2010-02-01

    SummaryThis paper compares two methods for modeling karst aquifers, which are heterogeneous, highly non-linear, and hierarchical systems. There is a clear need to model these systems given the crucial role they play in water supply in many countries. In recent years, the main components of soft computing (fuzzy logic (FL), and Artificial Neural Networks, (ANNs)) have come to prevail in the modeling of complex non-linear systems in different scientific and technologic disciplines. In this study, Artificial Neural Networks and Adaptive Neuro-Fuzzy Interface System (ANFIS) methods were used for the prediction of daily discharge of karstic aquifers and their capability was compared. The approach was applied to 7 years of daily data of La Rochefoucauld karst system in south-western France. In order to predict the karst daily discharges, single-input (rainfall, piezometric level) vs. multiple-input (rainfall and piezometric level) series were used. In addition to these inputs, all models used measured or simulated discharges from the previous days with a specified delay. The models were designed in a Matlab™ environment. An automatic procedure was used to select the best calibrated models. Daily discharge predictions were then performed using the calibrated models. Comparing predicted and observed hydrographs indicates that both models (ANN and ANFIS) provide close predictions of the karst daily discharges. The summary statistics of both series (observed and predicted daily discharges) are comparable. The performance of both models is improved when the number of inputs is increased from one to two. The root mean square error between the observed and predicted series reaches a minimum for two-input models. However, the ANFIS model demonstrates a better performance than the ANN model to predict peak flow. The ANFIS approach demonstrates a better generalization capability and slightly higher performance than the ANN, especially for peak discharges.

  14. Application of artificial neural network models and principal component analysis method in predicting stock prices on Tehran Stock Exchange

    Science.gov (United States)

    Zahedi, Javad; Rounaghi, Mohammad Mahdi

    2015-11-01

    Stock price changes are receiving the increasing attention of investors, especially those who have long-term aims. The present study intends to assess the predictability of prices on Tehran Stock Exchange through the application of artificial neural network models and principal component analysis method and using 20 accounting variables. Finally, goodness of fit for principal component analysis has been determined through real values, and the effective factors in Tehran Stock Exchange prices have been accurately predicted and modeled in the form of a new pattern consisting of all variables.

  15. Comparison of Kinetic-based and Artificial Neural Network Modeling Methods for a Pilot Scale Vacuum Gas Oil Hydrocracking Reactor

    Directory of Open Access Journals (Sweden)

    Sepehr Sadighi

    2013-12-01

    Full Text Available An artificial neural network (ANN and kinetic-based models for a pilot scale vacuum gas oil (VGO hydrocracking plant are presented in this paper. Reported experimental data in the literature were used to develop, train, and check these models. The proposed models are capable of predicting the yield of all main hydrocracking products including dry gas, light naphtha, heavy naphtha, kerosene, diesel, and unconverted VGO (residue. Results showed that kinetic-based and artificial neural models have specific capabilities to predict yield of hydrocracking products. The former is able to accurately predict the yield of lighter products, i.e. light naphtha, heavy naphtha and kerosene. However, ANN model is capable of predicting yields of diesel and residue with higher precision. The comparison shows that the ANN model is superior to the kinetic-base models.  © 2013 BCREC UNDIP. All rights reservedReceived: 9th April 2013; Revised: 13rd August 2013; Accepted: 18th August 2013[How to Cite: Sadighi, S., Zahedi, G.R. (2013. Comparison of Kinetic-based and Artificial Neural Network Modeling Methods for a Pilot Scale Vacuum Gas Oil Hydrocracking Reactor. Bulletin of Chemical Reaction Engineering & Catalysis, 8 (2: 125-136. (doi:10.9767/bcrec.8.2.4722.125-136][Permalink/DOI: http://dx.doi.org/10.9767/bcrec.8.2.4722.125-136

  16. CNEM: Cluster Based Network Evolution Model

    Directory of Open Access Journals (Sweden)

    Sarwat Nizamani

    2015-01-01

    Full Text Available This paper presents a network evolution model, which is based on the clustering approach. The proposed approach depicts the network evolution, which demonstrates the network formation from individual nodes to fully evolved network. An agglomerative hierarchical clustering method is applied for the evolution of network. In the paper, we present three case studies which show the evolution of the networks from the scratch. These case studies include: terrorist network of 9/11 incidents, terrorist network of WMD (Weapons Mass Destruction plot against France and a network of tweets discussing a topic. The network of 9/11 is also used for evaluation, using other social network analysis methods which show that the clusters created using the proposed model of network evolution are of good quality, thus the proposed method can be used by law enforcement agencies in order to further investigate the criminal networks

  17. Modeling the citation network by network cosmology.

    Science.gov (United States)

    Xie, Zheng; Ouyang, Zhenzheng; Zhang, Pengyuan; Yi, Dongyun; Kong, Dexing

    2015-01-01

    Citation between papers can be treated as a causal relationship. In addition, some citation networks have a number of similarities to the causal networks in network cosmology, e.g., the similar in-and out-degree distributions. Hence, it is possible to model the citation network using network cosmology. The casual network models built on homogenous spacetimes have some restrictions when describing some phenomena in citation networks, e.g., the hot papers receive more citations than other simultaneously published papers. We propose an inhomogenous causal network model to model the citation network, the connection mechanism of which well expresses some features of citation. The node growth trend and degree distributions of the generated networks also fit those of some citation networks well.

  18. Modeling the citation network by network cosmology.

    Directory of Open Access Journals (Sweden)

    Zheng Xie

    Full Text Available Citation between papers can be treated as a causal relationship. In addition, some citation networks have a number of similarities to the causal networks in network cosmology, e.g., the similar in-and out-degree distributions. Hence, it is possible to model the citation network using network cosmology. The casual network models built on homogenous spacetimes have some restrictions when describing some phenomena in citation networks, e.g., the hot papers receive more citations than other simultaneously published papers. We propose an inhomogenous causal network model to model the citation network, the connection mechanism of which well expresses some features of citation. The node growth trend and degree distributions of the generated networks also fit those of some citation networks well.

  19. Application of response surface methodology and artificial neural network methods in modelling and optimization of biosorption process.

    Science.gov (United States)

    Witek-Krowiak, Anna; Chojnacka, Katarzyna; Podstawczyk, Daria; Dawiec, Anna; Pokomeda, Karol

    2014-05-01

    A review on the application of response surface methodology (RSM) and artificial neural networks (ANN) in biosorption modelling and optimization is presented. The theoretical background of the discussed methods with the application procedure is explained. The paper describes most frequently used experimental designs, concerning their limitations and typical applications. The paper also presents ways to determine the accuracy and the significance of model fitting for both methodologies described herein. Furthermore, recent references on biosorption modelling and optimization with the use of RSM and the ANN approach are shown. Special attention was paid to the selection of factors and responses, as well as to statistical analysis of the modelling results. Copyright © 2014 Elsevier Ltd. All rights reserved.

  20. Artificial neural network modelling

    CERN Document Server

    Samarasinghe, Sandhya

    2016-01-01

    This book covers theoretical aspects as well as recent innovative applications of Artificial Neural networks (ANNs) in natural, environmental, biological, social, industrial and automated systems. It presents recent results of ANNs in modelling small, large and complex systems under three categories, namely, 1) Networks, Structure Optimisation, Robustness and Stochasticity 2) Advances in Modelling Biological and Environmental Systems and 3) Advances in Modelling Social and Economic Systems. The book aims at serving undergraduates, postgraduates and researchers in ANN computational modelling. .

  1. Variational Monte Carlo method for fermionic models combined with tensor networks and applications to the hole-doped two-dimensional Hubbard model

    Science.gov (United States)

    Zhao, Hui-Hai; Ido, Kota; Morita, Satoshi; Imada, Masatoshi

    2017-08-01

    The conventional tensor-network states employ real-space product states as reference wave functions. Here, we propose a many-variable variational Monte Carlo (mVMC) method combined with tensor networks by taking advantages of both to study fermionic models. The variational wave function is composed of a pair product wave function operated by real-space correlation factors and tensor networks. Moreover, we can apply quantum number projections, such as spin, momentum, and lattice symmetry projections, to recover the symmetry of the wave function to further improve the accuracy. We benchmark our method for one- and two-dimensional Hubbard models, which show significant improvement over the results obtained individually either by mVMC or by tensor network. We have applied the present method to a hole-doped Hubbard model on the square lattice, which indicates the stripe charge/spin order coexisting with a weak d -wave superconducting order in the ground state for the doping concentration of less than 0.3, where the stripe oscillation period gets longer with increasing hole concentration. The charge homogeneous and highly superconducting state also exists as a metastable excited state for the doping concentration less than 0.25.

  2. Modeling network technology deployment rates with different network models

    OpenAIRE

    Chung, Yoo

    2011-01-01

    To understand the factors that encourage the deployment of a new networking technology, we must be able to model how such technology gets deployed. We investigate how network structure influences deployment with a simple deployment model and different network models through computer simulations. The results indicate that a realistic model of networking technology deployment should take network structure into account.

  3. A Direct Time-Domain Particle Tracking Method for Modeling Solute Transport in a Network of Fractures

    Science.gov (United States)

    Lee, H.-S.; Liou, T.-S.

    2009-04-01

    Modeling of solute transport in naturally fractured rocks is challenged by a suitable description of the inherent heterogeneity and associated uncertainty of the fracture network. Despite the success of discrete fracture network (DFN) models in reproducing geometric and structural properties of a fracture network, the extensive computational load of DFNs on numerical simulation of solute transport inevitably limits themselves to small-scale applications. Therefore, we have developed a direct time-domain particle tracking (TDPT) method for overcoming these difficulties. Transport processes considered in our TDPT model includes advection and hydrodynamic dispersion in the fracture and Fickian diffusion in the matrix. Mass exchange between fracture and matrix is also assumed by molecular diffusion. Decay and kinetic sorption onto fracture surfaces and within matrix pores are considered as well. This approach is different from other TDPTs in that particle arrival time can be sampled directly by a single step, and that hydrodynamic dispersion is taken into account for a reliable prediction of particle travel time. The ‘directedness' of our TDPT is achieved by neglecting aperture variability within a single fracture and by incorporating hydrodynamic dispersion into the transport model. Note, however, that a heterogeneous aperture field within the network is allowed in order to reflect large-scale flow channeling caused by velocity variation between fracture segments. We also derive a memory function to represent the retention process due to kinetic sorption and Fickian diffusion into rock matrix of limited size. Laplace domain transport model is first solved from a Lagragian perspective, which is then numerically inverted to get the particle arrival time. Simulation results in a single fracture show that early-time BTC characteristics are determined mainly by transport in the fracture. On the other hand, late-time BTC is controlled by retention-related processes such

  4. Advanced fault diagnosis methods in molecular networks.

    Science.gov (United States)

    Habibi, Iman; Emamian, Effat S; Abdi, Ali

    2014-01-01

    Analysis of the failure of cell signaling networks is an important topic in systems biology and has applications in target discovery and drug development. In this paper, some advanced methods for fault diagnosis in signaling networks are developed and then applied to a caspase network and an SHP2 network. The goal is to understand how, and to what extent, the dysfunction of molecules in a network contributes to the failure of the entire network. Network dysfunction (failure) is defined as failure to produce the expected outputs in response to the input signals. Vulnerability level of a molecule is defined as the probability of the network failure, when the molecule is dysfunctional. In this study, a method to calculate the vulnerability level of single molecules for different combinations of input signals is developed. Furthermore, a more complex yet biologically meaningful method for calculating the multi-fault vulnerability levels is suggested, in which two or more molecules are simultaneously dysfunctional. Finally, a method is developed for fault diagnosis of networks based on a ternary logic model, which considers three activity levels for a molecule instead of the previously published binary logic model, and provides equations for the vulnerabilities of molecules in a ternary framework. Multi-fault analysis shows that the pairs of molecules with high vulnerability typically include a highly vulnerable molecule identified by the single fault analysis. The ternary fault analysis for the caspase network shows that predictions obtained using the more complex ternary model are about the same as the predictions of the simpler binary approach. This study suggests that by increasing the number of activity levels the complexity of the model grows; however, the predictive power of the ternary model does not appear to be increased proportionally.

  5. Homotopy methods for counting reaction network equilibria

    OpenAIRE

    Craciun, Gheorghe; Helton, J. William; Williams, Ruth J

    2007-01-01

    Dynamical system models of complex biochemical reaction networks are usually high-dimensional, nonlinear, and contain many unknown parameters. In some cases the reaction network structure dictates that positive equilibria must be unique for all values of the parameters in the model. In other cases multiple equilibria exist if and only if special relationships between these parameters are satisfied. We describe methods based on homotopy invariance of degree which allow us to determine the numb...

  6. Modeling Epidemic Network Failures

    DEFF Research Database (Denmark)

    Ruepp, Sarah Renée; Fagertun, Anna Manolova

    2013-01-01

    This paper presents the implementation of a failure propagation model for transport networks when multiple failures occur resulting in an epidemic. We model the Susceptible Infected Disabled (SID) epidemic model and validate it by comparing it to analytical solutions. Furthermore, we evaluate...

  7. Graph modeling systems and methods

    Science.gov (United States)

    Neergaard, Mike

    2015-10-13

    An apparatus and a method for vulnerability and reliability modeling are provided. The method generally includes constructing a graph model of a physical network using a computer, the graph model including a plurality of terminating vertices to represent nodes in the physical network, a plurality of edges to represent transmission paths in the physical network, and a non-terminating vertex to represent a non-nodal vulnerability along a transmission path in the physical network. The method additionally includes evaluating the vulnerability and reliability of the physical network using the constructed graph model, wherein the vulnerability and reliability evaluation includes a determination of whether each terminating and non-terminating vertex represents a critical point of failure. The method can be utilized to evaluate wide variety of networks, including power grid infrastructures, communication network topologies, and fluid distribution systems.

  8. Sampling of temporal networks: Methods and biases

    Science.gov (United States)

    Rocha, Luis E. C.; Masuda, Naoki; Holme, Petter

    2017-11-01

    Temporal networks have been increasingly used to model a diversity of systems that evolve in time; for example, human contact structures over which dynamic processes such as epidemics take place. A fundamental aspect of real-life networks is that they are sampled within temporal and spatial frames. Furthermore, one might wish to subsample networks to reduce their size for better visualization or to perform computationally intensive simulations. The sampling method may affect the network structure and thus caution is necessary to generalize results based on samples. In this paper, we study four sampling strategies applied to a variety of real-life temporal networks. We quantify the biases generated by each sampling strategy on a number of relevant statistics such as link activity, temporal paths and epidemic spread. We find that some biases are common in a variety of networks and statistics, but one strategy, uniform sampling of nodes, shows improved performance in most scenarios. Given the particularities of temporal network data and the variety of network structures, we recommend that the choice of sampling methods be problem oriented to minimize the potential biases for the specific research questions on hand. Our results help researchers to better design network data collection protocols and to understand the limitations of sampled temporal network data.

  9. The model of social crypto-network

    Directory of Open Access Journals (Sweden)

    Марк Миколайович Орел

    2015-06-01

    Full Text Available The article presents the theoretical model of social network with the enhanced mechanism of privacy policy. It covers the problems arising in the process of implementing the mentioned type of network. There are presented the methods of solving problems arising in the process of building the social network with privacy policy. It was built a theoretical model of social networks with enhanced information protection methods based on information and communication blocks

  10. The model of social crypto-network

    OpenAIRE

    Марк Миколайович Орел

    2015-01-01

    The article presents the theoretical model of social network with the enhanced mechanism of privacy policy. It covers the problems arising in the process of implementing the mentioned type of network. There are presented the methods of solving problems arising in the process of building the social network with privacy policy. It was built a theoretical model of social networks with enhanced information protection methods based on information and communication blocks

  11. Integration of Adaptive Neuro-Fuzzy Inference System, Neural Networks and Geostatistical Methods for Fracture Density Modeling

    Directory of Open Access Journals (Sweden)

    Ja’fari A.

    2014-01-01

    Full Text Available Image logs provide useful information for fracture study in naturally fractured reservoir. Fracture dip, azimuth, aperture and fracture density can be obtained from image logs and have great importance in naturally fractured reservoir characterization. Imaging all fractured parts of hydrocarbon reservoirs and interpreting the results is expensive and time consuming. In this study, an improved method to make a quantitative correlation between fracture densities obtained from image logs and conventional well log data by integration of different artificial intelligence systems was proposed. The proposed method combines the results of Adaptive Neuro-Fuzzy Inference System (ANFIS and Neural Networks (NN algorithms for overall estimation of fracture density from conventional well log data. A simple averaging method was used to obtain a better result by combining results of ANFIS and NN. The algorithm applied on other wells of the field to obtain fracture density. In order to model the fracture density in the reservoir, we used variography and sequential simulation algorithms like Sequential Indicator Simulation (SIS and Truncated Gaussian Simulation (TGS. The overall algorithm applied to Asmari reservoir one of the SW Iranian oil fields. Histogram analysis applied to control the quality of the obtained models. Results of this study show that for higher number of fracture facies the TGS algorithm works better than SIS but in small number of fracture facies both algorithms provide approximately same results.

  12. Complex networks principles, methods and applications

    CERN Document Server

    Latora, Vito; Russo, Giovanni

    2017-01-01

    Networks constitute the backbone of complex systems, from the human brain to computer communications, transport infrastructures to online social systems and metabolic reactions to financial markets. Characterising their structure improves our understanding of the physical, biological, economic and social phenomena that shape our world. Rigorous and thorough, this textbook presents a detailed overview of the new theory and methods of network science. Covering algorithms for graph exploration, node ranking and network generation, among the others, the book allows students to experiment with network models and real-world data sets, providing them with a deep understanding of the basics of network theory and its practical applications. Systems of growing complexity are examined in detail, challenging students to increase their level of skill. An engaging presentation of the important principles of network science makes this the perfect reference for researchers and undergraduate and graduate students in physics, ...

  13. Interrogation Methods and Terror Networks

    Science.gov (United States)

    Baccara, Mariagiovanna; Bar-Isaac, Heski

    We examine how the structure of terror networks varies with legal limits on interrogation and the ability of authorities to extract information from detainees. We assume that terrorist networks are designed to respond optimally to a tradeoff caused by information exchange: Diffusing information widely leads to greater internal efficiency, but it leaves the organization more vulnerable to law enforcement. The extent of this vulnerability depends on the law enforcement authority’s resources, strategy and interrogation methods. Recognizing that the structure of a terrorist network responds to the policies of law enforcement authorities allows us to begin to explore the most effective policies from the authorities’ point of view.

  14. Research Note: The consequences of different methods for handling missing network data in Stochastic Actor Based Models.

    Science.gov (United States)

    Hipp, John R; Wang, Cheng; Butts, Carter T; Jose, Rupa; Lakon, Cynthia M

    2015-05-01

    Although stochastic actor based models (e.g., as implemented in the SIENA software program) are growing in popularity as a technique for estimating longitudinal network data, a relatively understudied issue is the consequence of missing network data for longitudinal analysis. We explore this issue in our research note by utilizing data from four schools in an existing dataset (the AddHealth dataset) over three time points, assessing the substantive consequences of using four different strategies for addressing missing network data. The results indicate that whereas some measures in such models are estimated relatively robustly regardless of the strategy chosen for addressing missing network data, some of the substantive conclusions will differ based on the missing data strategy chosen. These results have important implications for this burgeoning applied research area, implying that researchers should more carefully consider how they address missing data when estimating such models.

  15. Modeling the Dynamics of Compromised Networks

    Energy Technology Data Exchange (ETDEWEB)

    Soper, B; Merl, D M

    2011-09-12

    Accurate predictive models of compromised networks would contribute greatly to improving the effectiveness and efficiency of the detection and control of network attacks. Compartmental epidemiological models have been applied to modeling attack vectors such as viruses and worms. We extend the application of these models to capture a wider class of dynamics applicable to cyber security. By making basic assumptions regarding network topology we use multi-group epidemiological models and reaction rate kinetics to model the stochastic evolution of a compromised network. The Gillespie Algorithm is used to run simulations under a worst case scenario in which the intruder follows the basic connection rates of network traffic as a method of obfuscation.

  16. Data modeling of network dynamics

    Science.gov (United States)

    Jaenisch, Holger M.; Handley, James W.; Faucheux, Jeffery P.; Harris, Brad

    2004-01-01

    This paper highlights Data Modeling theory and its use for text data mining as a graphical network search engine. Data Modeling is then used to create a real-time filter capable of monitoring network traffic down to the port level for unusual dynamics and changes in business as usual. This is accomplished in an unsupervised fashion without a priori knowledge of abnormal characteristics. Two novel methods for converting streaming binary data into a form amenable to graphics based search and change detection are introduced. These techniques are then successfully applied to 1999 KDD Cup network attack data log-on sessions to demonstrate that Data Modeling can detect attacks without prior training on any form of attack behavior. Finally, two new methods for data encryption using these ideas are proposed.

  17. Multiple network interface core apparatus and method

    Science.gov (United States)

    Underwood, Keith D [Albuquerque, NM; Hemmert, Karl Scott [Albuquerque, NM

    2011-04-26

    A network interface controller and network interface control method comprising providing a single integrated circuit as a network interface controller and employing a plurality of network interface cores on the single integrated circuit.

  18. Methods and applications for detecting structure in complex networks

    Science.gov (United States)

    Leicht, Elizabeth A.

    The use of networks to represent systems of interacting components is now common in many fields including the biological, physical, and social sciences. Network models are widely applicable due to their relatively simple framework of vertices and edges. Network structure, patterns of connection between vertices, impacts both the functioning of networks and processes occurring on networks. However, many aspects of network structure are still poorly understood. This dissertation presents a set of network analysis methods and applications to real-world as well as simulated networks. The methods are divided into two main types: linear algebra formulations and probabilistic mixture model techniques. Network models lend themselves to compact mathematical representation as matrices, making linear algebra techniques useful probes of network structure. We present methods for the detection of two distinct, but related, network structural forms. First, we derive a measure of vertex similarity based upon network structure. The method builds on existing ideas concerning calculation of vertex similarity, but generalizes and extends the scope to large networks. Second, we address the detection of communities or modules in a specific class of networks, directed networks. We propose a method for detecting community structure in directed networks, which is an extension of a community detection method previously only known for undirected networks. Moving away from linear algebra formulations, we propose two methods for network structure detection based on probabilistic techniques. In the first method, we use the machinery of the expectation-maximization (EM) algorithm to probe patterns of connection among vertices in static networks. The technique allows for the detection of a broad range of types of structure in networks. The second method focuses on time evolving networks. We propose an application of the EM algorithm to evolving networks that can reveal significant structural

  19. New model for prediction binary mixture of antihistamine decongestant using artificial neural networks and least squares support vector machine by spectrophotometry method.

    Science.gov (United States)

    Mofavvaz, Shirin; Sohrabi, Mahmoud Reza; Nezamzadeh-Ejhieh, Alireza

    2017-07-05

    In the present study, artificial neural networks (ANNs) and least squares support vector machines (LS-SVM) as intelligent methods based on absorption spectra in the range of 230-300nm have been used for determination of antihistamine decongestant contents. In the first step, one type of network (feed-forward back-propagation) from the artificial neural network with two different training algorithms, Levenberg-Marquardt (LM) and gradient descent with momentum and adaptive learning rate back-propagation (GDX) algorithm, were employed and their performance was evaluated. The performance of the LM algorithm was better than the GDX algorithm. In the second one, the radial basis network was utilized and results compared with the previous network. In the last one, the other intelligent method named least squares support vector machine was proposed to construct the antihistamine decongestant prediction model and the results were compared with two of the aforementioned networks. The values of the statistical parameters mean square error (MSE), Regression coefficient (R2), correlation coefficient (r) and also mean recovery (%), relative standard deviation (RSD) used for selecting the best model between these methods. Moreover, the proposed methods were compared to the high- performance liquid chromatography (HPLC) as a reference method. One way analysis of variance (ANOVA) test at the 95% confidence level applied to the comparison results of suggested and reference methods that there were no significant differences between them. Copyright © 2017 Elsevier B.V. All rights reserved.

  20. New model for prediction binary mixture of antihistamine decongestant using artificial neural networks and least squares support vector machine by spectrophotometry method

    Science.gov (United States)

    Mofavvaz, Shirin; Sohrabi, Mahmoud Reza; Nezamzadeh-Ejhieh, Alireza

    2017-07-01

    In the present study, artificial neural networks (ANNs) and least squares support vector machines (LS-SVM) as intelligent methods based on absorption spectra in the range of 230-300 nm have been used for determination of antihistamine decongestant contents. In the first step, one type of network (feed-forward back-propagation) from the artificial neural network with two different training algorithms, Levenberg-Marquardt (LM) and gradient descent with momentum and adaptive learning rate back-propagation (GDX) algorithm, were employed and their performance was evaluated. The performance of the LM algorithm was better than the GDX algorithm. In the second one, the radial basis network was utilized and results compared with the previous network. In the last one, the other intelligent method named least squares support vector machine was proposed to construct the antihistamine decongestant prediction model and the results were compared with two of the aforementioned networks. The values of the statistical parameters mean square error (MSE), Regression coefficient (R2), correlation coefficient (r) and also mean recovery (%), relative standard deviation (RSD) used for selecting the best model between these methods. Moreover, the proposed methods were compared to the high- performance liquid chromatography (HPLC) as a reference method. One way analysis of variance (ANOVA) test at the 95% confidence level applied to the comparison results of suggested and reference methods that there were no significant differences between them.

  1. Binary Classification Method of Social Network Users

    Directory of Open Access Journals (Sweden)

    I. A. Poryadin

    2017-01-01

    Full Text Available The subject of research is a binary classification method of social network users based on the data analysis they have placed. Relevance of the task to gain information about a person by examining the content of his/her pages in social networks is exemplified. The most common approach to its solution is a visual browsing. The order of the regional authority in our country illustrates that its using in school education is needed. The article shows restrictions on the visual browsing of pupil’s pages in social networks as a tool for the teacher and the school psychologist and justifies that a process of social network users’ data analysis should be automated. Explores publications, which describe such data acquisition, processing, and analysis methods and considers their advantages and disadvantages. The article also gives arguments to support a proposal to study the classification method of social network users. One such method is credit scoring, which is used in banks and credit institutions to assess the solvency of clients. Based on the high efficiency of the method there is a proposal for significant expansion of its using in other areas of society. The possibility to use logistic regression as the mathematical apparatus of the proposed method of binary classification has been justified. Such an approach enables taking into account the different types of data extracted from social networks. Among them: the personal user data, information about hobbies, friends, graphic and text information, behaviour characteristics. The article describes a number of existing methods of data transformation that can be applied to solve the problem. An experiment of binary gender-based classification of social network users is described. A logistic model obtained for this example includes multiple logical variables obtained by transforming the user surnames. This experiment confirms the feasibility of the proposed method. Further work is to define a system

  2. High-Speed Network Traffic Management Analysis and Optimization Models and Methods

    CERN Document Server

    Zaborovski, V; Podgurski, Y; Shemanin, Y

    1997-01-01

    The main steps of automatic control methodology include the hierarchical representation of management system and the formal definitions of input variables, object and goal of control of each management level. A Petri net model of individual traffic source is presented. It is noted that the current set of traffic parameters recommended by ATM-forum is not enough to synthesize optimal traffic control system. The feature of traffic self-similarity can be used to effectively solve optimal control task. An example of an optimal control scheme for cell discarding algorithm is presented.

  3. RMBNToolbox: random models for biochemical networks

    Directory of Open Access Journals (Sweden)

    Niemi Jari

    2007-05-01

    Full Text Available Abstract Background There is an increasing interest to model biochemical and cell biological networks, as well as to the computational analysis of these models. The development of analysis methodologies and related software is rapid in the field. However, the number of available models is still relatively small and the model sizes remain limited. The lack of kinetic information is usually the limiting factor for the construction of detailed simulation models. Results We present a computational toolbox for generating random biochemical network models which mimic real biochemical networks. The toolbox is called Random Models for Biochemical Networks. The toolbox works in the Matlab environment, and it makes it possible to generate various network structures, stoichiometries, kinetic laws for reactions, and parameters therein. The generation can be based on statistical rules and distributions, and more detailed information of real biochemical networks can be used in situations where it is known. The toolbox can be easily extended. The resulting network models can be exported in the format of Systems Biology Markup Language. Conclusion While more information is accumulating on biochemical networks, random networks can be used as an intermediate step towards their better understanding. Random networks make it possible to study the effects of various network characteristics to the overall behavior of the network. Moreover, the construction of artificial network models provides the ground truth data needed in the validation of various computational methods in the fields of parameter estimation and data analysis.

  4. Probabilistic logic modeling of network reliability for hybrid network architectures

    Energy Technology Data Exchange (ETDEWEB)

    Wyss, G.D.; Schriner, H.K.; Gaylor, T.R.

    1996-10-01

    Sandia National Laboratories has found that the reliability and failure modes of current-generation network technologies can be effectively modeled using fault tree-based probabilistic logic modeling (PLM) techniques. We have developed fault tree models that include various hierarchical networking technologies and classes of components interconnected in a wide variety of typical and atypical configurations. In this paper we discuss the types of results that can be obtained from PLMs and why these results are of great practical value to network designers and analysts. After providing some mathematical background, we describe the `plug-and-play` fault tree analysis methodology that we have developed for modeling connectivity and the provision of network services in several current- generation network architectures. Finally, we demonstrate the flexibility of the method by modeling the reliability of a hybrid example network that contains several interconnected ethernet, FDDI, and token ring segments. 11 refs., 3 figs., 1 tab.

  5. Modeling Methods

    Science.gov (United States)

    Healy, Richard W.; Scanlon, Bridget R.

    2010-01-01

    Simulation models are widely used in all types of hydrologic studies, and many of these models can be used to estimate recharge. Models can provide important insight into the functioning of hydrologic systems by identifying factors that influence recharge. The predictive capability of models can be used to evaluate how changes in climate, water use, land use, and other factors may affect recharge rates. Most hydrological simulation models, including watershed models and groundwater-flow models, are based on some form of water-budget equation, so the material in this chapter is closely linked to that in Chapter 2. Empirical models that are not based on a water-budget equation have also been used for estimating recharge; these models generally take the form of simple estimation equations that define annual recharge as a function of precipitation and possibly other climatic data or watershed characteristics.Model complexity varies greatly. Some models are simple accounting models; others attempt to accurately represent the physics of water movement through each compartment of the hydrologic system. Some models provide estimates of recharge explicitly; for example, a model based on the Richards equation can simulate water movement from the soil surface through the unsaturated zone to the water table. Recharge estimates can be obtained indirectly from other models. For example, recharge is a parameter in groundwater-flow models that solve for hydraulic head (i.e. groundwater level). Recharge estimates can be obtained through a model calibration process in which recharge and other model parameter values are adjusted so that simulated water levels agree with measured water levels. The simulation that provides the closest agreement is called the best fit, and the recharge value used in that simulation is the model-generated estimate of recharge.

  6. Bayesian estimation of the network autocorrelation model

    NARCIS (Netherlands)

    Dittrich, D.; Leenders, R.T.A.J.; Mulder, J.

    2017-01-01

    The network autocorrelation model has been extensively used by researchers interested modeling social influence effects in social networks. The most common inferential method in the model is classical maximum likelihood estimation. This approach, however, has known problems such as negative bias of

  7. A Discrete Time Queueing Approach to Model and Evaluate Slotted Ring Network Buffer using Matrix Geometric Method

    Directory of Open Access Journals (Sweden)

    Syed Asif Ali Shah

    2011-01-01

    Full Text Available Assorted analytical methods have been proposed for evaluating the performance of a slotted ring network. This paper proposes MGM (Matrix Geometric Method to analyze the station buffer of a slotted ring for DT (Discrete-Time queueing. The slotted ring is analyzed for infinite station buffer as a late arrival DT system. Utilizing the characteristics of 2-D Markov chain, various performance measures are validated with their corresponding results such as, throughput and MPAD (Mean Packet Access Delay as well as the packet rejection probability for finite station buffer. The presented results prove efficacy of the method.

  8. Modeling Network Interdiction Tasks

    Science.gov (United States)

    2015-09-17

    allow professionals and families to stay in touch through voice or video calls. Power grids provide electricity to homes , offices, and recreational...instances using IBMr ILOGr CPLEXr Optimization Studio V12.6. For each instance, two solutions are deter- mined. First, the MNDP-a model is solved with no...three values: 0.25, 0.50, or 0.75. The DMP-a model is solved for the various random network instances using IBMr ILOGr CPLEXr Optimization Studio V12.6

  9. An Efficient Upscaling Procedure Based on Stokes-Brinkman Model and Discrete Fracture Network Method for Naturally Fractured Carbonate Karst Reservoirs

    KAUST Repository

    Qin, Guan

    2010-01-01

    Naturally-fractured carbonate karst reservoirs are characterized by various-sized solution caves that are connected via fracture networks at multiple scales. These complex geologic features can not be fully resolved in reservoir simulations due to the underlying uncertainty in geologic models and the large computational resource requirement. They also bring in multiple flow physics which adds to the modeling difficulties. It is thus necessary to develop a method to accurately represent the effect of caves, fractures and their interconnectivities in coarse-scale simulation models. In this paper, we present a procedure based on our previously proposed Stokes-Brinkman model (SPE 125593) and the discrete fracture network method for accurate and efficient upscaling of naturally fractured carbonate karst reservoirs.

  10. Coevolutionary modeling in network formation

    KAUST Repository

    Al-Shyoukh, Ibrahim

    2014-12-03

    Network coevolution, the process of network topology evolution in feedback with dynamical processes over the network nodes, is a common feature of many engineered and natural networks. In such settings, the change in network topology occurs at a comparable time scale to nodal dynamics. Coevolutionary modeling offers the possibility to better understand how and why network structures emerge. For example, social networks can exhibit a variety of structures, ranging from almost uniform to scale-free degree distributions. While current models of network formation can reproduce these structures, coevolutionary modeling can offer a better understanding of the underlying dynamics. This paper presents an overview of recent work on coevolutionary models of network formation, with an emphasis on the following three settings: (i) dynamic flow of benefits and costs, (ii) transient link establishment costs, and (iii) latent preferential attachment.

  11. A Systematic, Automated Network Planning Method

    DEFF Research Database (Denmark)

    Holm, Jens Åge; Pedersen, Jens Myrup

    2006-01-01

    This paper describes a case study conducted to evaluate the viability of a systematic, automated network planning method. The motivation for developing the network planning method was that many data networks are planned in an adhoc manner with no assurance of quality of the solution with respect...... to consistency and long-term characteristics. The developed method gives significant improvements on these parameters. The case study was conducted as a comparison between an existing network where the traffic was known and a proposed network designed by the developed method. It turned out that the proposed...... network performed better than the existing network with regard to the performance measurements used which reflected how well the traffic was routed in the networks and the cost of establishing the networks. Challenges that need to be solved before the developed method can be used to design network...

  12. Modeling gene regulatory networks: A network simplification algorithm

    Science.gov (United States)

    Ferreira, Luiz Henrique O.; de Castro, Maria Clicia S.; da Silva, Fabricio A. B.

    2016-12-01

    Boolean networks have been used for some time to model Gene Regulatory Networks (GRNs), which describe cell functions. Those models can help biologists to make predictions, prognosis and even specialized treatment when some disturb on the GRN lead to a sick condition. However, the amount of information related to a GRN can be huge, making the task of inferring its boolean network representation quite a challenge. The method shown here takes into account information about the interactome to build a network, where each node represents a protein, and uses the entropy of each node as a key to reduce the size of the network, allowing the further inferring process to focus only on the main protein hubs, the ones with most potential to interfere in overall network behavior.

  13. Do Network Models Just Model Networks? On The Applicability of Network-Oriented Modeling

    NARCIS (Netherlands)

    Treur, J.; Shmueli, Erez

    2017-01-01

    In this paper for a Network-Oriented Modelling perspective based on temporal-causal networks it is analysed how generic and applicable it is as a general modelling approach and as a computational paradigm. This results in an answer to the question in the title different from: network models just

  14. Polymer networks: Modeling and applications

    Science.gov (United States)

    Masoud, Hassan

    Polymer networks are an important class of materials that are ubiquitously found in natural, biological, and man-made systems. The complex mesoscale structure of these soft materials has made it difficult for researchers to fully explore their properties. In this dissertation, we introduce a coarse-grained computational model for permanently cross-linked polymer networks than can properly capture common properties of these materials. We use this model to study several practical problems involving dry and solvated networks. Specifically, we analyze the permeability and diffusivity of polymer networks under mechanical deformations, we examine the release of encapsulated solutes from microgel capsules during volume transitions, and we explore the complex tribological behavior of elastomers. Our simulations reveal that the network transport properties are defined by the network porosity and by the degree of network anisotropy due to mechanical deformations. In particular, the permeability of mechanically deformed networks can be predicted based on the alignment of network filaments that is characterized by a second order orientation tensor. Moreover, our numerical calculations demonstrate that responsive microcapsules can be effectively utilized for steady and pulsatile release of encapsulated solutes. We show that swollen gel capsules allow steady, diffusive release of nanoparticles and polymer chains, whereas gel deswelling causes burst-like discharge of solutes driven by an outward flow of the solvent initially enclosed within a shrinking capsule. We further demonstrate that this hydrodynamic release can be regulated by introducing rigid microscopic rods in the capsule interior. We also probe the effects of velocity, temperature, and normal load on the sliding of elastomers on smooth and corrugated substrates. Our friction simulations predict a bell-shaped curve for the dependence of the friction coefficient on the sliding velocity. Our simulations also illustrate

  15. Models of network reliability analysis, combinatorics, and Monte Carlo

    CERN Document Server

    Gertsbakh, Ilya B

    2009-01-01

    Unique in its approach, Models of Network Reliability: Analysis, Combinatorics, and Monte Carlo provides a brief introduction to Monte Carlo methods along with a concise exposition of reliability theory ideas. From there, the text investigates a collection of principal network reliability models, such as terminal connectivity for networks with unreliable edges and/or nodes, network lifetime distribution in the process of its destruction, network stationary behavior for renewable components, importance measures of network elements, reliability gradient, and network optimal reliability synthesis

  16. MBVCNN: Joint convolutional neural networks method for image recognition

    Science.gov (United States)

    Tong, Tong; Mu, Xiaodong; Zhang, Li; Yi, Zhaoxiang; Hu, Pei

    2017-05-01

    Aiming at the problem of objects in image recognition rectangle, but objects which are input into convolutional neural networks square, the object recognition model was put forward which was based on BING method to realize object estimate, used vectorization of convolutional neural networks to realize input square image in convolutional networks, therefore, built joint convolution neural networks, which achieve multiple size image input. Verified by experiments, the accuracy of multi-object image recognition was improved by 6.70% compared with single vectorization of convolutional neural networks. Therefore, image recognition method of joint convolutional neural networks can enhance the accuracy in image recognition, especially for target in rectangular shape.

  17. Modelling the structure of complex networks

    DEFF Research Database (Denmark)

    Herlau, Tue

    networks has been independently studied as mathematical objects in their own right. As such, there has been both an increased demand for statistical methods for complex networks as well as a quickly growing mathematical literature on the subject. In this dissertation we explore aspects of modelling complex......A complex network is a systems in which a discrete set of units interact in a quantifiable manner. Representing systems as complex networks have become increasingly popular in a variety of scientific fields including biology, social sciences and economics. Parallel to this development complex....... The next chapters will treat some of the various symmetries, representer theorems and probabilistic structures often deployed in the modelling complex networks, the construction of sampling methods and various network models. The introductory chapters will serve to provide context for the included written...

  18. A Laboratory Study on Stress Dependency of Joint Transmissivity and its Modeling with Neural Networks, Fuzzy Method and Regression Analysis

    Directory of Open Access Journals (Sweden)

    Amin Moori Roozali

    2014-08-01

    Full Text Available Correct estimation of water inflow into underground excavations can decrease safety risks and associated costs. Researchers have proposed different methods to asses this value. It has been proved that water transmissivity of a rock joint is a function of factors, such as normal stress, joint roughness and its size and water pressure therefore, a laboratory setup was proposed to quantitatively measure the flow as a function of mentioned parameters. Among these, normal stress has proved to be the most influential parameter. With increasing joint roughness and rock sample size, water flow has decreased while increasing water pressure has a direct increasing effect on the flow. To simulate the complex interaction of these parameters, neural networks and Fuzzy method together with regression analysis have been utilized. Correlation factors between laboratory results and obtained numerical ones show good agreement which proves usefulness of these methods for assessment of water inflow.

  19. Mathematical Modelling Plant Signalling Networks

    KAUST Repository

    Muraro, D.

    2013-01-01

    During the last two decades, molecular genetic studies and the completion of the sequencing of the Arabidopsis thaliana genome have increased knowledge of hormonal regulation in plants. These signal transduction pathways act in concert through gene regulatory and signalling networks whose main components have begun to be elucidated. Our understanding of the resulting cellular processes is hindered by the complex, and sometimes counter-intuitive, dynamics of the networks, which may be interconnected through feedback controls and cross-regulation. Mathematical modelling provides a valuable tool to investigate such dynamics and to perform in silico experiments that may not be easily carried out in a laboratory. In this article, we firstly review general methods for modelling gene and signalling networks and their application in plants. We then describe specific models of hormonal perception and cross-talk in plants. This mathematical analysis of sub-cellular molecular mechanisms paves the way for more comprehensive modelling studies of hormonal transport and signalling in a multi-scale setting. © EDP Sciences, 2013.

  20. Sensor Network Data Fusion Methods

    Directory of Open Access Journals (Sweden)

    Martynas Vervečka

    2011-03-01

    Full Text Available Sensor network data fusion is widely used in warfare, in areas such as automatic target recognition, battlefield surveillance, automatic vehicle control, multiple target surveillance, etc. Non-military use example are: medical equipment status monitoring, intelligent home. The paper describes sensor networks topologies, sensor network advantages against the isolated sensors, most common network topologies, their advantages and disadvantages.Article in Lithuanian

  1. Modeling semiflexible polymer networks

    OpenAIRE

    Broedersz, Chase P.; MacKintosh, Fred C.

    2014-01-01

    Here, we provide an overview of theoretical approaches to semiflexible polymers and their networks. Such semiflexible polymers have large bending rigidities that can compete with the entropic tendency of a chain to crumple up into a random coil. Many studies on semiflexible polymers and their assemblies have been motivated by their importance in biology. Indeed, crosslinked networks of semiflexible polymers form a major structural component of tissue and living cells. Reconstituted networks o...

  2. A new method for constructing networks from binary data

    Science.gov (United States)

    van Borkulo, Claudia D.; Borsboom, Denny; Epskamp, Sacha; Blanken, Tessa F.; Boschloo, Lynn; Schoevers, Robert A.; Waldorp, Lourens J.

    2014-08-01

    Network analysis is entering fields where network structures are unknown, such as psychology and the educational sciences. A crucial step in the application of network models lies in the assessment of network structure. Current methods either have serious drawbacks or are only suitable for Gaussian data. In the present paper, we present a method for assessing network structures from binary data. Although models for binary data are infamous for their computational intractability, we present a computationally efficient model for estimating network structures. The approach, which is based on Ising models as used in physics, combines logistic regression with model selection based on a Goodness-of-Fit measure to identify relevant relationships between variables that define connections in a network. A validation study shows that this method succeeds in revealing the most relevant features of a network for realistic sample sizes. We apply our proposed method to estimate the network of depression and anxiety symptoms from symptom scores of 1108 subjects. Possible extensions of the model are discussed.

  3. Thermal Network Modelling Handbook

    Science.gov (United States)

    1972-01-01

    Thermal mathematical modelling is discussed in detail. A three-fold purpose was established: (1) to acquaint the new user with the terminology and concepts used in thermal mathematical modelling, (2) to present the more experienced and occasional user with quick formulas and methods for solving everyday problems, coupled with study cases which lend insight into the relationships that exist among the various solution techniques and parameters, and (3) to begin to catalog in an orderly fashion the common formulas which may be applied to automated conversational language techniques.

  4. Random graph models for dynamic networks

    Science.gov (United States)

    Zhang, Xiao; Moore, Cristopher; Newman, Mark E. J.

    2017-10-01

    Recent theoretical work on the modeling of network structure has focused primarily on networks that are static and unchanging, but many real-world networks change their structure over time. There exist natural generalizations to the dynamic case of many static network models, including the classic random graph, the configuration model, and the stochastic block model, where one assumes that the appearance and disappearance of edges are governed by continuous-time Markov processes with rate parameters that can depend on properties of the nodes. Here we give an introduction to this class of models, showing for instance how one can compute their equilibrium properties. We also demonstrate their use in data analysis and statistical inference, giving efficient algorithms for fitting them to observed network data using the method of maximum likelihood. This allows us, for example, to estimate the time constants of network evolution or infer community structure from temporal network data using cues embedded both in the probabilities over time that node pairs are connected by edges and in the characteristic dynamics of edge appearance and disappearance. We illustrate these methods with a selection of applications, both to computer-generated test networks and real-world examples.

  5. Complex Networks in Psychological Models

    Science.gov (United States)

    Wedemann, R. S.; Carvalho, L. S. A. V. D.; Donangelo, R.

    We develop schematic, self-organizing, neural-network models to describe mechanisms associated with mental processes, by a neurocomputational substrate. These models are examples of real world complex networks with interesting general topological structures. Considering dopaminergic signal-to-noise neuronal modulation in the central nervous system, we propose neural network models to explain development of cortical map structure and dynamics of memory access, and unify different mental processes into a single neurocomputational substrate. Based on our neural network models, neurotic behavior may be understood as an associative memory process in the brain, and the linguistic, symbolic associative process involved in psychoanalytic working-through can be mapped onto a corresponding process of reconfiguration of the neural network. The models are illustrated through computer simulations, where we varied dopaminergic modulation and observed the self-organizing emergent patterns at the resulting semantic map, interpreting them as different manifestations of mental functioning, from psychotic through to normal and neurotic behavior, and creativity.

  6. Model for Microcirculation Transportation Network Design

    Directory of Open Access Journals (Sweden)

    Qun Chen

    2012-01-01

    Full Text Available The idea of microcirculation transportation was proposed to shunt heavy traffic on arterial roads through branch roads. The optimization model for designing micro-circulation transportation network was developed to pick out branch roads as traffic-shunting channels and determine their required capacity, trying to minimize the total reconstruction expense and land occupancy subject to saturation and reconstruction space constraints, while accounting for the route choice behaviour of network users. Since micro-circulation transportation network design problem includes both discrete and continuous variables, a discretization method was developed to convert two groups of variables (discrete variables and continuous variables into one group of new discrete variables, transforming the mixed network design problem into a new kind of discrete network design problem with multiple values. The genetic algorithm was proposed to solve the new discrete network design problem. Finally a numerical example demonstrated the efficiency of the model and algorithm.

  7. A Robust Method for Inferring Network Structures.

    Science.gov (United States)

    Yang, Yang; Luo, Tingjin; Li, Zhoujun; Zhang, Xiaoming; Yu, Philip S

    2017-07-12

    Inferring the network structure from limited observable data is significant in molecular biology, communication and many other areas. It is challenging, primarily because the observable data are sparse, finite and noisy. The development of machine learning and network structure study provides a great chance to solve the problem. In this paper, we propose an iterative smoothing algorithm with structure sparsity (ISSS) method. The elastic penalty in the model is introduced for the sparse solution, identifying group features and avoiding over-fitting, and the total variation (TV) penalty in the model can effectively utilize the structure information to identify the neighborhood of the vertices. Due to the non-smoothness of the elastic and structural TV penalties, an efficient algorithm with the Nesterov's smoothing optimization technique is proposed to solve the non-smooth problem. The experimental results on both synthetic and real-world networks show that the proposed model is robust against insufficient data and high noise. In addition, we investigate many factors that play important roles in identifying the performance of ISSS.

  8. Complex networks repair strategies: Dynamic models

    Science.gov (United States)

    Fu, Chaoqi; Wang, Ying; Gao, Yangjun; Wang, Xiaoyang

    2017-09-01

    Network repair strategies are tactical methods that restore the efficiency of damaged networks; however, unreasonable repair strategies not only waste resources, they are also ineffective for network recovery. Most extant research on network repair focuses on static networks, but results and findings on static networks cannot be applied to evolutionary dynamic networks because, in dynamic models, complex network repair has completely different characteristics. For instance, repaired nodes face more severe challenges, and require strategic repair methods in order to have a significant effect. In this study, we propose the Shell Repair Strategy (SRS) to minimize the risk of secondary node failures due to the cascading effect. Our proposed method includes the identification of a set of vital nodes that have a significant impact on network repair and defense. Our identification of these vital nodes reduces the number of switching nodes that face the risk of secondary failures during the dynamic repair process. This is positively correlated with the size of the average degree 〈 k 〉 and enhances network invulnerability.

  9. Multi-criteria decision making development of ion chromatographic method for determination of inorganic anions in oilfield waters based on artificial neural networks retention model.

    Science.gov (United States)

    Stefanović, Stefica Cerjan; Bolanča, Tomislav; Luša, Melita; Ukić, Sime; Rogošić, Marko

    2012-02-24

    This paper describes the development of ad hoc methodology for determination of inorganic anions in oilfield water, since their composition often significantly differs from the average (concentration of components and/or matrix). Therefore, fast and reliable method development has to be performed in order to ensure the monitoring of desired properties under new conditions. The method development was based on computer assisted multi-criteria decision making strategy. The used criteria were: maximal value of objective functions used, maximal robustness of the separation method, minimal analysis time, and maximal retention distance between two nearest components. Artificial neural networks were used for modeling of anion retention. The reliability of developed method was extensively tested by the validation of performance characteristics. Based on validation results, the developed method shows satisfactory performance characteristics, proving the successful application of computer assisted methodology in the described case study. Copyright © 2011 Elsevier B.V. All rights reserved.

  10. Developing Personal Network Business Models

    DEFF Research Database (Denmark)

    Saugstrup, Dan; Henten, Anders

    2006-01-01

    on the 'state of the art' in the field of business modeling. Furthermore, the paper suggests three generic business models for PNs: a service oriented model, a self-organized model, and a combination model. Finally, examples of relevant services and applications in relation to three different cases......The aim of the paper is to examine the issue of business modeling in relation to personal networks, PNs. The paper builds on research performed on business models in the EU 1ST MAGNET1 project (My personal Adaptive Global NET). The paper presents the Personal Network concept and briefly reports...... are presented and analyzed in light of business modeling of PN....

  11. A model of coauthorship networks

    Science.gov (United States)

    Zhou, Guochang; Li, Jianping; Xie, Zonglin

    2017-10-01

    A natural way of representing the coauthorship of authors is to use a generalization of graphs known as hypergraphs. A random geometric hypergraph model is proposed here to model coauthorship networks, which is generated by placing nodes on a region of Euclidean space randomly and uniformly, and connecting some nodes if the nodes satisfy particular geometric conditions. Two kinds of geometric conditions are designed to model the collaboration patterns of academic authorities and basic researches respectively. The conditions give geometric expressions of two causes of coauthorship: the authority and similarity of authors. By simulation and calculus, we show that the forepart of the degree distribution of the network generated by the model is mixture Poissonian, and the tail is power-law, which are similar to these of some coauthorship networks. Further, we show more similarities between the generated network and real coauthorship networks: the distribution of cardinalities of hyperedges, high clustering coefficient, assortativity, and small-world property

  12. Comparison of Artificial Neural Network (ANN Model Development Methods for Prediction of Macroinvertebrate Communities in the Zwalm River Basin in Flanders, Belgium

    Directory of Open Access Journals (Sweden)

    Andy P. Dedecker

    2002-01-01

    Full Text Available Modelling has become an interesting tool to support decision making in water management. River ecosystem modelling methods have improved substantially during recent years. New concepts, such as artificial neural networks, fuzzy logic, evolutionary algorithms, chaos and fractals, cellular automata, etc., are being more commonly used to analyse ecosystem databases and to make predictions for river management purposes. In this context, artificial neural networks were applied to predict macroinvertebrate communities in the Zwalm River basin (Flanders, Belgium. Structural characteristics (meandering, substrate type, flow velocity and physical and chemical variables (dissolved oxygen, pH were used as predictive variables to predict the presence or absence of macroinvertebrate taxa in the headwaters and brooks of the Zwalm River basin. Special interest was paid to the frequency of occurrence of the taxa as well as the selection of the predictors and variables to be predicted on the prediction reliability of the developed models. Sensitivity analyses allowed us to study the impact of the predictive variables on the prediction of presence or absence of macroinvertebrate taxa and to define which variables are the most influential in determining the neural network outputs.

  13. A Model of Network Porosity

    Science.gov (United States)

    2016-11-09

    standpoint remains more of an art than a science . Even when well executed, the ongoing evolution of the network may violate initial, security-critical design...from a security standpoint remains more of an art than a science . Even when well executed, the ongoing evolution of the network may violate initial...is outside the scope of this paper. As such, we focus on event probabilities. The output of the network porosity model is a stream of timestamped

  14. Telecommunications network modelling, planning and design

    CERN Document Server

    Evans, Sharon

    2003-01-01

    Telecommunication Network Modelling, Planning and Design addresses sophisticated modelling techniques from the perspective of the communications industry and covers some of the major issues facing telecommunications network engineers and managers today. Topics covered include network planning for transmission systems, modelling of SDH transport network structures and telecommunications network design and performance modelling, as well as network costs and ROI modelling and QoS in 3G networks.

  15. A novel community detection method in bipartite networks

    Science.gov (United States)

    Zhou, Cangqi; Feng, Liang; Zhao, Qianchuan

    2018-02-01

    Community structure is a common and important feature in many complex networks, including bipartite networks, which are used as a standard model for many empirical networks comprised of two types of nodes. In this paper, we propose a two-stage method for detecting community structure in bipartite networks. Firstly, we extend the widely-used Louvain algorithm to bipartite networks. The effectiveness and efficiency of the Louvain algorithm have been proved by many applications. However, there lacks a Louvain-like algorithm specially modified for bipartite networks. Based on bipartite modularity, a measure that extends unipartite modularity and that quantifies the strength of partitions in bipartite networks, we fill the gap by developing the Bi-Louvain algorithm that iteratively groups the nodes in each part by turns. This algorithm in bipartite networks often produces a balanced network structure with equal numbers of two types of nodes. Secondly, for the balanced network yielded by the first algorithm, we use an agglomerative clustering method to further cluster the network. We demonstrate that the calculation of the gain of modularity of each aggregation, and the operation of joining two communities can be compactly calculated by matrix operations for all pairs of communities simultaneously. At last, a complete hierarchical community structure is unfolded. We apply our method to two benchmark data sets and a large-scale data set from an e-commerce company, showing that it effectively identifies community structure in bipartite networks.

  16. Campus network security model study

    Science.gov (United States)

    Zhang, Yong-ku; Song, Li-ren

    2011-12-01

    Campus network security is growing importance, Design a very effective defense hacker attacks, viruses, data theft, and internal defense system, is the focus of the study in this paper. This paper compared the firewall; IDS based on the integrated, then design of a campus network security model, and detail the specific implementation principle.

  17. A Novel Petri Nets-Based Modeling Method for the Interaction between the Sensor and the Geographic Environment in Emerging Sensor Networks

    Science.gov (United States)

    Zhang, Feng; Xu, Yuetong; Chou, Jarong

    2016-01-01

    The service of sensor device in Emerging Sensor Networks (ESNs) is the extension of traditional Web services. Through the sensor network, the service of sensor device can communicate directly with the entity in the geographic environment, and even impact the geographic entity directly. The interaction between the sensor device in ESNs and geographic environment is very complex, and the interaction modeling is a challenging problem. This paper proposed a novel Petri Nets-based modeling method for the interaction between the sensor device and the geographic environment. The feature of the sensor device service in ESNs is more easily affected by the geographic environment than the traditional Web service. Therefore, the response time, the fault-tolerant ability and the resource consumption become important factors in the performance of the whole sensor application system. Thus, this paper classified IoT services as Sensing services and Controlling services according to the interaction between IoT service and geographic entity, and classified GIS services as data services and processing services. Then, this paper designed and analyzed service algebra and Colored Petri Nets model to modeling the geo-feature, IoT service, GIS service and the interaction process between the sensor and the geographic enviroment. At last, the modeling process is discussed by examples. PMID:27681730

  18. A Novel Petri Nets-Based Modeling Method for the Interaction between the Sensor and the Geographic Environment in Emerging Sensor Networks.

    Science.gov (United States)

    Zhang, Feng; Xu, Yuetong; Chou, Jarong

    2016-09-25

    The service of sensor device in Emerging Sensor Networks (ESNs) is the extension of traditional Web services. Through the sensor network, the service of sensor device can communicate directly with the entity in the geographic environment, and even impact the geographic entity directly. The interaction between the sensor device in ESNs and geographic environment is very complex, and the interaction modeling is a challenging problem. This paper proposed a novel Petri Nets-based modeling method for the interaction between the sensor device and the geographic environment. The feature of the sensor device service in ESNs is more easily affected by the geographic environment than the traditional Web service. Therefore, the response time, the fault-tolerant ability and the resource consumption become important factors in the performance of the whole sensor application system. Thus, this paper classified IoT services as Sensing services and Controlling services according to the interaction between IoT service and geographic entity, and classified GIS services as data services and processing services. Then, this paper designed and analyzed service algebra and Colored Petri Nets model to modeling the geo-feature, IoT service, GIS service and the interaction process between the sensor and the geographic enviroment. At last, the modeling process is discussed by examples.

  19. A Novel Petri Nets-Based Modeling Method for the Interaction between the Sensor and the Geographic Environment in Emerging Sensor Networks

    Directory of Open Access Journals (Sweden)

    Feng Zhang

    2016-09-01

    Full Text Available The service of sensor device in Emerging Sensor Networks (ESNs is the extension of traditional Web services. Through the sensor network, the service of sensor device can communicate directly with the entity in the geographic environment, and even impact the geographic entity directly. The interaction between the sensor device in ESNs and geographic environment is very complex, and the interaction modeling is a challenging problem. This paper proposed a novel Petri Nets-based modeling method for the interaction between the sensor device and the geographic environment. The feature of the sensor device service in ESNs is more easily affected by the geographic environment than the traditional Web service. Therefore, the response time, the fault-tolerant ability and the resource consumption become important factors in the performance of the whole sensor application system. Thus, this paper classified IoT services as Sensing services and Controlling services according to the interaction between IoT service and geographic entity, and classified GIS services as data services and processing services. Then, this paper designed and analyzed service algebra and Colored Petri Nets model to modeling the geo-feature, IoT service, GIS service and the interaction process between the sensor and the geographic enviroment. At last, the modeling process is discussed by examples.

  20. Finite element micro-modelling of a human ankle bone reveals the importance of the trabecular network to mechanical performance: new methods for the generation and comparison of 3D models.

    Science.gov (United States)

    Parr, W C H; Chamoli, U; Jones, A; Walsh, W R; Wroe, S

    2013-01-04

    Most modelling of whole bones does not incorporate trabecular geometry and treats bone as a solid non-porous structure. Some studies have modelled trabecular networks in isolation. One study has modelled the performance of whole human bones incorporating trabeculae, although this required considerable computer resources and purpose-written code. The difference between mechanical behaviour in models that incorporate trabecular geometry and non-porous models has not been explored. The ability to easily model trabecular networks may shed light on the mechanical consequences of bone loss in osteoporosis and remodelling after implant insertion. Here we present a Finite Element Analysis (FEA) of a human ankle bone that includes trabecular network geometry. We compare results from this model with results from non-porous models and introduce protocols achievable on desktop computers using widely available softwares. Our findings show that models including trabecular geometry are considerably stiffer than non-porous whole bone models wherein the non-cortical component has the same mass as the trabecular network, suggesting inclusion of trabecular geometry is desirable. We further present new methods for the construction and analysis of 3D models permitting: (1) construction of multi-property, non-porous models wherein cortical layer thickness can be manipulated; (2) maintenance of the same triangle network for the outer cortical bone surface in both 3D reconstruction and non-porous models allowing exact replication of load and restraint cases; and (3) creation of an internal landmark point grid allowing direct comparison between 3D FE Models (FEMs). Copyright © 2012 Elsevier Ltd. All rights reserved.

  1. Neural network modeling of emotion

    Science.gov (United States)

    Levine, Daniel S.

    2007-03-01

    This article reviews the history and development of computational neural network modeling of cognitive and behavioral processes that involve emotion. The exposition starts with models of classical conditioning dating from the early 1970s. Then it proceeds toward models of interactions between emotion and attention. Then models of emotional influences on decision making are reviewed, including some speculative (not and not yet simulated) models of the evolution of decision rules. Through the late 1980s, the neural networks developed to model emotional processes were mainly embodiments of significant functional principles motivated by psychological data. In the last two decades, network models of these processes have become much more detailed in their incorporation of known physiological properties of specific brain regions, while preserving many of the psychological principles from the earlier models. Most network models of emotional processes so far have dealt with positive and negative emotion in general, rather than specific emotions such as fear, joy, sadness, and anger. But a later section of this article reviews a few models relevant to specific emotions: one family of models of auditory fear conditioning in rats, and one model of induced pleasure enhancing creativity in humans. Then models of emotional disorders are reviewed. The article concludes with philosophical statements about the essential contributions of emotion to intelligent behavior and the importance of quantitative theories and models to the interdisciplinary enterprise of understanding the interactions of emotion, cognition, and behavior.

  2. Modeling semiflexible polymer networks

    NARCIS (Netherlands)

    Broedersz, C.P.; MacKintosh, F.C.

    2014-01-01

    This is an overview of theoretical approaches to semiflexible polymers and their networks. Such semiflexible polymers have large bending rigidities that can compete with the entropic tendency of a chain to crumple up into a random coil. Many studies on semiflexible polymers and their assemblies have

  3. Diagrammatic perturbation methods in networks and sports ranking combinatorics

    Science.gov (United States)

    Park, Juyong

    2010-04-01

    Analytic and computational tools developed in statistical physics are being increasingly applied to the study of complex networks. Here we present recent developments in the diagrammatic perturbation methods for the exponential random graph models, and apply them to the combinatoric problem of determining the ranking of nodes in directed networks that represent pairwise competitions.

  4. Performance modeling, stochastic networks, and statistical multiplexing

    CERN Document Server

    Mazumdar, Ravi R

    2013-01-01

    This monograph presents a concise mathematical approach for modeling and analyzing the performance of communication networks with the aim of introducing an appropriate mathematical framework for modeling and analysis as well as understanding the phenomenon of statistical multiplexing. The models, techniques, and results presented form the core of traffic engineering methods used to design, control and allocate resources in communication networks.The novelty of the monograph is the fresh approach and insights provided by a sample-path methodology for queueing models that highlights the importan

  5. Markov State Models of gene regulatory networks.

    Science.gov (United States)

    Chu, Brian K; Tse, Margaret J; Sato, Royce R; Read, Elizabeth L

    2017-02-06

    Gene regulatory networks with dynamics characterized by multiple stable states underlie cell fate-decisions. Quantitative models that can link molecular-level knowledge of gene regulation to a global understanding of network dynamics have the potential to guide cell-reprogramming strategies. Networks are often modeled by the stochastic Chemical Master Equation, but methods for systematic identification of key properties of the global dynamics are currently lacking. The method identifies the number, phenotypes, and lifetimes of long-lived states for a set of common gene regulatory network models. Application of transition path theory to the constructed Markov State Model decomposes global dynamics into a set of dominant transition paths and associated relative probabilities for stochastic state-switching. In this proof-of-concept study, we found that the Markov State Model provides a general framework for analyzing and visualizing stochastic multistability and state-transitions in gene networks. Our results suggest that this framework-adopted from the field of atomistic Molecular Dynamics-can be a useful tool for quantitative Systems Biology at the network scale.

  6. Constructing an Intelligent Patent Network Analysis Method

    OpenAIRE

    Chao-Chan Wu; Ching-Bang Yao

    2012-01-01

    Patent network analysis, an advanced method of patent analysis, is a useful tool for technology management. This method visually displays all the relationships among the patents and enables the analysts to intuitively comprehend the overview of a set of patents in the field of the technology being studied. Although patent network analysis possesses relative advantages different from traditional methods of patent analysis, it is subject to several crucial limitations. To overcome the drawbacks...

  7. Modeling gene regulatory network motifs using Statecharts.

    Science.gov (United States)

    Fioravanti, Fabio; Helmer-Citterich, Manuela; Nardelli, Enrico

    2012-03-28

    Gene regulatory networks are widely used by biologists to describe the interactions among genes, proteins and other components at the intra-cellular level. Recently, a great effort has been devoted to give gene regulatory networks a formal semantics based on existing computational frameworks.For this purpose, we consider Statecharts, which are a modular, hierarchical and executable formal model widely used to represent software systems. We use Statecharts for modeling small and recurring patterns of interactions in gene regulatory networks, called motifs. We present an improved method for modeling gene regulatory network motifs using Statecharts and we describe the successful modeling of several motifs, including those which could not be modeled or whose models could not be distinguished using the method of a previous proposal.We model motifs in an easy and intuitive way by taking advantage of the visual features of Statecharts. Our modeling approach is able to simulate some interesting temporal properties of gene regulatory network motifs: the delay in the activation and the deactivation of the "output" gene in the coherent type-1 feedforward loop, the pulse in the incoherent type-1 feedforward loop, the bistability nature of double positive and double negative feedback loops, the oscillatory behavior of the negative feedback loop, and the "lock-in" effect of positive autoregulation. We present a Statecharts-based approach for the modeling of gene regulatory network motifs in biological systems. The basic motifs used to build more complex networks (that is, simple regulation, reciprocal regulation, feedback loop, feedforward loop, and autoregulation) can be faithfully described and their temporal dynamics can be analyzed.

  8. Mobility Model for Tactical Networks

    Science.gov (United States)

    Rollo, Milan; Komenda, Antonín

    In this paper a synthetic mobility model which represents behavior and movement pattern of heterogeneous units in disaster relief and battlefield scenarios is proposed. These operations usually take place in environment without preexisting communication infrastructure and units thus have to be connected by wireless communication network. Units cooperate to fulfill common tasks and communication network has to serve high amount of communication requests, especially data, voice and video stream transmissions. To verify features of topology control, routing and interaction protocols software simulations are usually used, because of their scalability, repeatability and speed. Behavior of all these protocols relies on the mobility model of the network nodes, which has to resemble real-life movement pattern. Proposed mobility model is goal-driven and provides support for various types of units, group mobility and realistic environment model with obstacles. Basic characteristics of the mobility model like node spatial distribution and average node degree were analyzed.

  9. Modelling freeway networks by hybrid stochastic models

    OpenAIRE

    Boel, R.; Mihaylova, L.

    2004-01-01

    Traffic flow on freeways is a nonlinear, many-particle phenomenon, with complex interactions between the vehicles. This paper presents a stochastic hybrid model of freeway traffic at a time scale and at a level of detail suitable for on-line flow estimation, for routing and ramp metering control. The model describes the evolution of continuous and discrete state variables. The freeway is considered as a network of components, each component representing a different section of the network. The...

  10. Constructing an Intelligent Patent Network Analysis Method

    Directory of Open Access Journals (Sweden)

    Chao-Chan Wu

    2012-11-01

    Full Text Available Patent network analysis, an advanced method of patent analysis, is a useful tool for technology management. This method visually displays all the relationships among the patents and enables the analysts to intuitively comprehend the overview of a set of patents in the field of the technology being studied. Although patent network analysis possesses relative advantages different from traditional methods of patent analysis, it is subject to several crucial limitations. To overcome the drawbacks of the current method, this study proposes a novel patent analysis method, called the intelligent patent network analysis method, to make a visual network with great precision. Based on artificial intelligence techniques, the proposed method provides an automated procedure for searching patent documents, extracting patent keywords, and determining the weight of each patent keyword in order to generate a sophisticated visualization of the patent network. This study proposes a detailed procedure for generating an intelligent patent network that is helpful for improving the efficiency and quality of patent analysis. Furthermore, patents in the field of Carbon Nanotube Backlight Unit (CNT-BLU were analyzed to verify the utility of the proposed method.

  11. Graph methods for the investigation of metabolic networks in parasitology.

    Science.gov (United States)

    Cottret, Ludovic; Jourdan, Fabien

    2010-08-01

    Recently, a way was opened with the development of many mathematical methods to model and analyze genome-scale metabolic networks. Among them, methods based on graph models enable to us quickly perform large-scale analyses on large metabolic networks. However, it could be difficult for parasitologists to select the graph model and methods adapted to their biological questions. In this review, after briefly addressing the problem of the metabolic network reconstruction, we propose an overview of the graph-based approaches used in whole metabolic network analyses. Applications highlight the usefulness of this kind of approach in the field of parasitology, especially by suggesting metabolic targets for new drugs. Their development still represents a major challenge to fight against the numerous diseases caused by parasites.

  12. Network model of security system

    Directory of Open Access Journals (Sweden)

    Adamczyk Piotr

    2016-01-01

    Full Text Available The article presents the concept of building a network security model and its application in the process of risk analysis. It indicates the possibility of a new definition of the role of the network models in the safety analysis. Special attention was paid to the development of the use of an algorithm describing the process of identifying the assets, vulnerability and threats in a given context. The aim of the article is to present how this algorithm reduced the complexity of the problem by eliminating from the base model these components that have no links with others component and as a result and it was possible to build a real network model corresponding to reality.

  13. An Equivalent Fracture Modeling Method

    Science.gov (United States)

    Li, Shaohua; Zhang, Shujuan; Yu, Gaoming; Xu, Aiyun

    2017-12-01

    3D fracture network model is built based on discrete fracture surfaces, which are simulated based on fracture length, dip, aperture, height and so on. The interesting area of Wumishan Formation of Renqiu buried hill reservoir is about 57 square kilometer and the thickness of target strata is more than 2000 meters. In addition with great fracture density, the fracture simulation and upscaling of discrete fracture network model of Wumishan Formation are very intense computing. In order to solve this problem, a method of equivalent fracture modeling is proposed. First of all, taking the fracture interpretation data obtained from imaging logging and conventional logging as the basic data, establish the reservoir level model, and then under the constraint of reservoir level model, take fault distance analysis model as the second variable, establish fracture density model by Sequential Gaussian Simulation method. Increasing the width, height and length of fracture, at the same time decreasing its density in order to keep the similar porosity and permeability after upscaling discrete fracture network model. In this way, the fracture model of whole interesting area can be built within an accepted time.

  14. Inference of time-delayed gene regulatory networks based on dynamic Bayesian network hybrid learning method.

    Science.gov (United States)

    Yu, Bin; Xu, Jia-Meng; Li, Shan; Chen, Cheng; Chen, Rui-Xin; Wang, Lei; Zhang, Yan; Wang, Ming-Hui

    2017-10-06

    Gene regulatory networks (GRNs) research reveals complex life phenomena from the perspective of gene interaction, which is an important research field in systems biology. Traditional Bayesian networks have a high computational complexity, and the network structure scoring model has a single feature. Information-based approaches cannot identify the direction of regulation. In order to make up for the shortcomings of the above methods, this paper presents a novel hybrid learning method (DBNCS) based on dynamic Bayesian network (DBN) to construct the multiple time-delayed GRNs for the first time, combining the comprehensive score (CS) with the DBN model. DBNCS algorithm first uses CMI2NI (conditional mutual inclusive information-based network inference) algorithm for network structure profiles learning, namely the construction of search space. Then the redundant regulations are removed by using the recursive optimization algorithm (RO), thereby reduce the false positive rate. Secondly, the network structure profiles are decomposed into a set of cliques without loss, which can significantly reduce the computational complexity. Finally, DBN model is used to identify the direction of gene regulation within the cliques and search for the optimal network structure. The performance of DBNCS algorithm is evaluated by the benchmark GRN datasets from DREAM challenge as well as the SOS DNA repair network in Escherichia coli, and compared with other state-of-the-art methods. The experimental results show the rationality of the algorithm design and the outstanding performance of the GRNs.

  15. A Multilayer Model of Computer Networks

    OpenAIRE

    Shchurov, Andrey A.

    2015-01-01

    The fundamental concept of applying the system methodology to network analysis declares that network architecture should take into account services and applications which this network provides and supports. This work introduces a formal model of computer networks on the basis of the hierarchical multilayer networks. In turn, individual layers are represented as multiplex networks. The concept of layered networks provides conditions of top-down consistency of the model. Next, we determined the...

  16. Modelling dendritic ecological networks in space: anintegrated network perspective

    Science.gov (United States)

    Peterson, Erin E.; Ver Hoef, Jay M.; Isaak, Dan J.; Falke, Jeffrey A.; Fortin, Marie-Josée; Jordon, Chris E.; McNyset, Kristina; Monestiez, Pascal; Ruesch, Aaron S.; Sengupta, Aritra; Som, Nicholas; Steel, E. Ashley; Theobald, David M.; Torgersen, Christian E.; Wenger, Seth J.

    2013-01-01

    Dendritic ecological networks (DENs) are a unique form of ecological networks that exhibit a dendritic network topology (e.g. stream and cave networks or plant architecture). DENs have a dual spatial representation; as points within the network and as points in geographical space. Consequently, some analytical methods used to quantify relationships in other types of ecological networks, or in 2-D space, may be inadequate for studying the influence of structure and connectivity on ecological processes within DENs. We propose a conceptual taxonomy of network analysis methods that account for DEN characteristics to varying degrees and provide a synthesis of the different approaches within

  17. Artificial neural network cardiopulmonary modeling and diagnosis

    Science.gov (United States)

    Kangas, Lars J.; Keller, Paul E.

    1997-01-01

    The present invention is a method of diagnosing a cardiopulmonary condition in an individual by comparing data from a progressive multi-stage test for the individual to a non-linear multi-variate model, preferably a recurrent artificial neural network having sensor fusion. The present invention relies on a cardiovascular model developed from physiological measurements of an individual. Any differences between the modeled parameters and the parameters of an individual at a given time are used for diagnosis.

  18. A improved Network Security Situation Awareness Model

    Directory of Open Access Journals (Sweden)

    Li Fangwei

    2015-08-01

    Full Text Available In order to reflect the situation of network security assessment performance fully and accurately, a new network security situation awareness model based on information fusion was proposed. Network security situation is the result of fusion three aspects evaluation. In terms of attack, to improve the accuracy of evaluation, a situation assessment method of DDoS attack based on the information of data packet was proposed. In terms of vulnerability, a improved Common Vulnerability Scoring System (CVSS was raised and maked the assessment more comprehensive. In terms of node weights, the method of calculating the combined weights and optimizing the result by Sequence Quadratic Program (SQP algorithm which reduced the uncertainty of fusion was raised. To verify the validity and necessity of the method, a testing platform was built and used to test through evaluating 2000 DAPRA data sets. Experiments show that the method can improve the accuracy of evaluation results.

  19. A Comparison of Geographic Information Systems, Complex Networks, and Other Models for Analyzing Transportation Network Topologies

    Science.gov (United States)

    Alexandrov, Natalia (Technical Monitor); Kuby, Michael; Tierney, Sean; Roberts, Tyler; Upchurch, Christopher

    2005-01-01

    This report reviews six classes of models that are used for studying transportation network topologies. The report is motivated by two main questions. First, what can the "new science" of complex networks (scale-free, small-world networks) contribute to our understanding of transport network structure, compared to more traditional methods? Second, how can geographic information systems (GIS) contribute to studying transport networks? The report defines terms that can be used to classify different kinds of models by their function, composition, mechanism, spatial and temporal dimensions, certainty, linearity, and resolution. Six broad classes of models for analyzing transport network topologies are then explored: GIS; static graph theory; complex networks; mathematical programming; simulation; and agent-based modeling. Each class of models is defined and classified according to the attributes introduced earlier. The paper identifies some typical types of research questions about network structure that have been addressed by each class of model in the literature.

  20. A Transfer Learning Approach for Network Modeling

    Science.gov (United States)

    Huang, Shuai; Li, Jing; Chen, Kewei; Wu, Teresa; Ye, Jieping; Wu, Xia; Yao, Li

    2012-01-01

    Networks models have been widely used in many domains to characterize the interacting relationship between physical entities. A typical problem faced is to identify the networks of multiple related tasks that share some similarities. In this case, a transfer learning approach that can leverage the knowledge gained during the modeling of one task to help better model another task is highly desirable. In this paper, we propose a transfer learning approach, which adopts a Bayesian hierarchical model framework to characterize task relatedness and additionally uses the L1-regularization to ensure robust learning of the networks with limited sample sizes. A method based on the Expectation-Maximization (EM) algorithm is further developed to learn the networks from data. Simulation studies are performed, which demonstrate the superiority of the proposed transfer learning approach over single task learning that learns the network of each task in isolation. The proposed approach is also applied to identification of brain connectivity networks of Alzheimer’s disease (AD) from functional magnetic resonance image (fMRI) data. The findings are consistent with the AD literature. PMID:24526804

  1. An algebra-based method for inferring gene regulatory networks.

    Science.gov (United States)

    Vera-Licona, Paola; Jarrah, Abdul; Garcia-Puente, Luis David; McGee, John; Laubenbacher, Reinhard

    2014-03-26

    The inference of gene regulatory networks (GRNs) from experimental observations is at the heart of systems biology. This includes the inference of both the network topology and its dynamics. While there are many algorithms available to infer the network topology from experimental data, less emphasis has been placed on methods that infer network dynamics. Furthermore, since the network inference problem is typically underdetermined, it is essential to have the option of incorporating into the inference process, prior knowledge about the network, along with an effective description of the search space of dynamic models. Finally, it is also important to have an understanding of how a given inference method is affected by experimental and other noise in the data used. This paper contains a novel inference algorithm using the algebraic framework of Boolean polynomial dynamical systems (BPDS), meeting all these requirements. The algorithm takes as input time series data, including those from network perturbations, such as knock-out mutant strains and RNAi experiments. It allows for the incorporation of prior biological knowledge while being robust to significant levels of noise in the data used for inference. It uses an evolutionary algorithm for local optimization with an encoding of the mathematical models as BPDS. The BPDS framework allows an effective representation of the search space for algebraic dynamic models that improves computational performance. The algorithm is validated with both simulated and experimental microarray expression profile data. Robustness to noise is tested using a published mathematical model of the segment polarity gene network in Drosophila melanogaster. Benchmarking of the algorithm is done by comparison with a spectrum of state-of-the-art network inference methods on data from the synthetic IRMA network to demonstrate that our method has good precision and recall for the network reconstruction task, while also predicting several of the

  2. Semantic Security Methods for Software-Defined Networks

    Directory of Open Access Journals (Sweden)

    Ekaterina Ju. Antoshina

    2017-01-01

    Full Text Available Software-defined networking is a promising technology for constructing communication networks where the network management is the software that configures network devices. This contrasts with the traditional point of view where the network behaviour is updated by manual configuration uploading to devices under control. The software controller allows dynamic routing configuration inside the net depending on the quality of service. However, there must be a proof that ensures that every network flow is secure, for example, we can define security policy as follows: confidential nodes can not send data to the public segment of the network. The paper shows how this problem can be solved by using a semantic security model. We propose a method that allows us to construct semantics that captures necessary security properties the network must follow. This involves the specification that states allowed and forbidden network flows. The specification is then modeled as a decision tree that may be reduced. We use the decision tree for semantic construction that captures security requirements. The semantic can be implemented as a module of the controller software so the correctness of the control plane of the network can be ensured on-the-fly. 

  3. Propagation models for computing biochemical reaction networks

    OpenAIRE

    Henzinger, Thomas A; Mateescu, Maria

    2011-01-01

    We introduce propagation models, a formalism designed to support general and efficient data structures for the transient analysis of biochemical reaction networks. We give two use cases for propagation abstract data types: the uniformization method and numerical integration. We also sketch an implementation of a propagation abstract data type, which uses abstraction to approximate states.

  4. Lagrangian modeling of switching electrical networks

    NARCIS (Netherlands)

    Scherpen, Jacquelien M.A.; Jeltsema, Dimitri; Klaassens, J. Ben

    2003-01-01

    In this paper, a general and systematic method is presented to model topologically complete electrical networks, with or without multiple or single switches, within the Euler–Lagrange framework. Apart from the physical insight that can be obtained in this way, the framework has proven to be useful

  5. Computational Modeling of Complex Protein Activity Networks

    NARCIS (Netherlands)

    Schivo, Stefano; Leijten, Jeroen; Karperien, Marcel; Post, Janine N.; Prignet, Claude

    2017-01-01

    Because of the numerous entities interacting, the complexity of the networks that regulate cell fate makes it impossible to analyze and understand them using the human brain alone. Computational modeling is a powerful method to unravel complex systems. We recently described the development of a

  6. Modern Community Detection Methods in Social Networks

    Directory of Open Access Journals (Sweden)

    V. O. Chesnokov

    2017-01-01

    Full Text Available Social network structure is not homogeneous. Groups of vertices which have a lot of links between them are called communities. A survey of algorithms discovering such groups is presented in the article.A popular approach to community detection is to use an graph clustering algorithm.  Methods based on inner metric optimization are common. 5 groups of algorithms are listed: based on optimization, joining vertices into clusters by some closeness measure, special subgraphs discovery, partitioning graph by deleting edges,  and based on a dynamic process or generative model.Overlapping community detection algorithms are usually just modified graph clustering algorithms. Other approaches do exist, e.g. ones based on edges clustering or constructing communities around randomly chosen vertices. Methods based on nonnegative matrix factorization are also used, but they have high computational complexity. Algorithms based on label propagation lack this disadvantage. Methods based on affiliation model are perspective. This model claims that communities define the structure of a graph.Algorithms which use node attributes are considered: ones based on latent Dirichlet allocation, initially used for text clustering, and CODICIL, where edges of node content relevance are added to the original edge set. 6 classes are listed for algorithms for graphs with node attributes: changing egdes’ weights, changing vertex distance function, building augmented graph with nodes and attributes, based on stochastic  models, partitioning attribute space and others.Overlapping community detection algorithms which effectively use node attributes are just started to appear. Methods based on partitioning attribute space,  latent Dirichlet allocation,  stochastic  models and  nonnegative matrix factorization are considered. The most effective algorithm on real datasets is CESNA. It is based on affiliation model. However, it gives results which are far from ground truth

  7. Network 'small-world-ness': a quantitative method for determining canonical network equivalence.

    Directory of Open Access Journals (Sweden)

    Mark D Humphries

    Full Text Available BACKGROUND: Many technological, biological, social, and information networks fall into the broad class of 'small-world' networks: they have tightly interconnected clusters of nodes, and a shortest mean path length that is similar to a matched random graph (same number of nodes and edges. This semi-quantitative definition leads to a categorical distinction ('small/not-small' rather than a quantitative, continuous grading of networks, and can lead to uncertainty about a network's small-world status. Moreover, systems described by small-world networks are often studied using an equivalent canonical network model--the Watts-Strogatz (WS model. However, the process of establishing an equivalent WS model is imprecise and there is a pressing need to discover ways in which this equivalence may be quantified. METHODOLOGY/PRINCIPAL FINDINGS: We defined a precise measure of 'small-world-ness' S based on the trade off between high local clustering and short path length. A network is now deemed a 'small-world' if S>1--an assertion which may be tested statistically. We then examined the behavior of S on a large data-set of real-world systems. We found that all these systems were linked by a linear relationship between their S values and the network size n. Moreover, we show a method for assigning a unique Watts-Strogatz (WS model to any real-world network, and show analytically that the WS models associated with our sample of networks also show linearity between S and n. Linearity between S and n is not, however, inevitable, and neither is S maximal for an arbitrary network of given size. Linearity may, however, be explained by a common limiting growth process. CONCLUSIONS/SIGNIFICANCE: We have shown how the notion of a small-world network may be quantified. Several key properties of the metric are described and the use of WS canonical models is placed on a more secure footing.

  8. An autocatalytic network model for stock markets

    Science.gov (United States)

    Caetano, Marco Antonio Leonel; Yoneyama, Takashi

    2015-02-01

    The stock prices of companies with businesses that are closely related within a specific sector of economy might exhibit movement patterns and correlations in their dynamics. The idea in this work is to use the concept of autocatalytic network to model such correlations and patterns in the trends exhibited by the expected returns. The trends are expressed in terms of positive or negative returns within each fixed time interval. The time series derived from these trends is then used to represent the movement patterns by a probabilistic boolean network with transitions modeled as an autocatalytic network. The proposed method might be of value in short term forecasting and identification of dependencies. The method is illustrated with a case study based on four stocks of companies in the field of natural resource and technology.

  9. Artificial neural network intelligent method for prediction

    Science.gov (United States)

    Trifonov, Roumen; Yoshinov, Radoslav; Pavlova, Galya; Tsochev, Georgi

    2017-09-01

    Accounting and financial classification and prediction problems are high challenge and researchers use different methods to solve them. Methods and instruments for short time prediction of financial operations using artificial neural network are considered. The methods, used for prediction of financial data as well as the developed forecasting system with neural network are described in the paper. The architecture of a neural network used four different technical indicators, which are based on the raw data and the current day of the week is presented. The network developed is used for forecasting movement of stock prices one day ahead and consists of an input layer, one hidden layer and an output layer. The training method is algorithm with back propagation of the error. The main advantage of the developed system is self-determination of the optimal topology of neural network, due to which it becomes flexible and more precise The proposed system with neural network is universal and can be applied to various financial instruments using only basic technical indicators as input data.

  10. Methods of graph network reconstruction in personalized medicine.

    Science.gov (United States)

    Danilov, A; Ivanov, Yu; Pryamonosov, R; Vassilevski, Yu

    2016-08-01

    The paper addresses methods for generation of individualized computational domains on the basis of medical imaging dataset. The computational domains will be used in one-dimensional (1D) and three-dimensional (3D)-1D coupled hemodynamic models. A 1D hemodynamic model employs a 1D network of a patient-specific vascular network with large number of vessels. The 1D network is the graph with nodes in the 3D space which bears additional geometric data such as length and radius of vessels. A 3D hemodynamic model requires a detailed 3D reconstruction of local parts of the vascular network. We propose algorithms which extend the automated segmentation of vascular and tubular structures, generation of centerlines, 1D network reconstruction, correction, and local adaptation. We consider two modes of centerline representation: (i) skeletal segments or sets of connected voxels and (ii) curved paths with corresponding radii. Individualized reconstruction of 1D networks depends on the mode of centerline representation. Efficiency of the proposed algorithms is demonstrated on several examples of 1D network reconstruction. The networks can be used in modeling of blood flows as well as other physiological processes in tubular structures. Copyright © 2015 John Wiley & Sons, Ltd. Copyright © 2015 John Wiley & Sons, Ltd.

  11. The Frequency of High-Risk Behaviors Among Iranian College Students Using Indirect Methods: Network Scale-Up and Crosswise Model.

    Science.gov (United States)

    Kazemzadeh, Yasan; Shokoohi, Mostafa; Baneshi, Mohammad Reza; Haghdoost, Ali Akbar

    2016-09-01

    Since the direct questions usually underestimate the frequency of sensitive behaviors, indirect methods can be used to estimate the frequency of some risky behaviors such as illicit drug use, sexual behaviors especially where these behaviors are highly stigmatized. In the current study, we indirectly estimated the prevalence of some risky behaviors among college students using two indirect methods: network scale-up (NSU) and crosswise model (CM). Having recruited 563 students from one of Iran's major medical universities, the prevalence of opium and drug use, alcohol consumption, relationships with the opposite sex (RWOS),and extra/pre-marital sex (EPMS) were estimated using two indirect methods. The estimated prevalence using the CM and NSU were alcohol consumption (16.8% vs. 8.1%), opium use (2.2% both), methamphetamine use (7.2% vs. 1.2%), taking tramadol without medical indications (14.8% vs. 4.8%), RWOS (42.3% vs. 31.9%), and EPMS (12.4% vs. 7.1%). Lower estimations in the NSU method might be due to the transmission barrier, which means that students were not fully aware of the high-risk behaviors of their close friends. Nonetheless, it seems that these risky behaviors were more or less common among Iranian college students.

  12. Network Models of Mechanical Assemblies

    Science.gov (United States)

    Whitney, Daniel E.

    Recent network research has sought to characterize complex systems with a number of statistical metrics, such as power law exponent (if any), clustering coefficient, community behavior, and degree correlation. Use of such metrics represents a choice of level of abstraction, a balance of generality and detailed accuracy. It has been noted that "social networks" consistently display clustering coefficients that are higher than those of random or generalized random networks, that they have small world properties such as short path lengths, and that they have positive degree correlations (assortative mixing). "Technological" or "non-social" networks display many of these characteristics except that they generally have negative degree correlations (disassortative mixing). [Newman 2003i] In this paper we examine network models of mechanical assemblies. Such systems are well understood functionally. We show that there is a cap on their average nodal degree and that they have negative degree correlations (disassortative mixing). We identify specific constraints arising from first principles, their structural patterns, and engineering practice that suggest why they have these properties. In addition, we note that their main "motif" is closed loops (as it is for electric and electronic circuits), a pattern that conventional network analysis does not detect but which is used by software intended to aid in the design of such systems.

  13. NETWORK ECONOMY INNOVATIVE POTENTIAL EVALUATION METHOD

    Directory of Open Access Journals (Sweden)

    E. V. Loguinova

    2011-01-01

    Full Text Available Existing methodological approaches to assessment of the innovation potential having been analyzed, a network system innovative potential identification and characterization method is proposed that makes it possible to assess the potential’s qualitative and quantitative components and to determine their consistency with national innovative system formation and development objectives. Four stages are recommended and determined to assess the network economy innovative potential. Main structural elements of the network economy innovative potential are the resource, institutional, infrastructural and resulting factor totalities.

  14. Neural Networks For Electrohydrodynamic Effect Modelling

    Directory of Open Access Journals (Sweden)

    Wiesław Wajs

    2004-01-01

    Full Text Available This paper presents currently achieved results concerning methods of electrohydrodynamiceffect used in geophysics simulated with feedforward networks trained with backpropagation algorithm, radial basis function networks and generalized regression networks.

  15. Service entity network virtualization architecture and model

    Science.gov (United States)

    Jin, Xue-Guang; Shou, Guo-Chu; Hu, Yi-Hong; Guo, Zhi-Gang

    2017-07-01

    Communication network can be treated as a complex network carrying a variety of services and service can be treated as a network composed of functional entities. There are growing interests in multiplex service entities where individual entity and link can be used for different services simultaneously. Entities and their relationships constitute a service entity network. In this paper, we introduced a service entity network virtualization architecture including service entity network hierarchical model, service entity network model, service implementation and deployment of service entity networks. Service entity network oriented multiplex planning model were also studied and many of these multiplex models were characterized by a significant multiplex of the links or entities in different service entity network. Service entity networks were mapped onto shared physical resources by dynamic resource allocation controller. The efficiency of the proposed architecture was illustrated in a simulation environment that allows for comparative performance evaluation. The results show that, compared to traditional networking architecture, this architecture has a better performance.

  16. Neural Network Model for Thermal Inactivation of Salmonella Typhimurium to Elimination in Ground Chicken: Acquisition of Data by Whole Sample Enrichment, Miniature Most-Probable-Number Method.

    Science.gov (United States)

    Oscar, T P

    2017-01-01

    Predictive models are valuable tools for assessing food safety. Existing thermal inactivation models for Salmonella and ground chicken do not provide predictions above 71°C, which is below the recommended final cooked temperature of 73.9°C for chicken. They also do not predict when all Salmonella are eliminated without extrapolating beyond the data used to develop them. Thus, a study was undertaken to develop a model for thermal inactivation of Salmonella to elimination in ground chicken at temperatures above those of existing models. Ground chicken thigh portions (0.76 cm(3)) in microcentrifuge tubes were inoculated with 4.45 ± 0.25 log most probable number (MPN) of a single strain of Salmonella Typhimurium (chicken isolate). They were cooked at 50 to 100°C in 2 or 2.5°C increments in a heating block that simulated two-sided pan frying. A whole sample enrichment, miniature MPN (WSE-mMPN) method was used for enumeration. The lower limit of detection was one Salmonella cell per portion. MPN data were used to develop a multiple-layer feedforward neural network model. Model performance was evaluated using the acceptable prediction zone (APZ) method. The proportion of residuals in an APZ (pAPZ) from -1 log (fail-safe) to 0.5 log (fail-dangerous) was 0.911 (379 of 416) for dependent data and 0.910 (162 of 178) for independent data for interpolation. A pAPZ ≥0.7 indicated that model predictions had acceptable bias and accuracy. There were no local prediction problems because pAPZ for individual thermal inactivation curves ranged from 0.813 to 1.000. Independent data for interpolation satisfied the test data criteria of the APZ method. Thus, the model was successfully validated. Predicted times for a 1-log reduction ranged from 9.6 min at 56°C to 0.71 min at 100°C. Predicted times for elimination ranged from 8.6 min at 60°C to 1.4 min at 100°C. The model will be a valuable new tool for predicting and managing this important risk to public health.

  17. Dynamic analysis of biochemical network using complex network method

    Directory of Open Access Journals (Sweden)

    Wang Shuqiang

    2015-01-01

    Full Text Available In this study, the stochastic biochemical reaction model is proposed based on the law of mass action and complex network theory. The dynamics of biochemical reaction system is presented as a set of non-linear differential equations and analyzed at the molecular-scale. Given the initial state and the evolution rules of the biochemical reaction system, the system can achieve homeostasis. Compared with random graph, the biochemical reaction network has larger information capacity and is more efficient in information transmission. This is consistent with theory of evolution.

  18. Combination of artificial neural network and genetic algorithm method for modeling of methylene blue adsorption onto wood sawdust from water samples.

    Science.gov (United States)

    Khajeh, Mostafa; Sarafraz-Yazdi, Ali; Natavan, Zahra Bameri

    2016-03-01

    The aim of this research was to develop a low price and environmentally friendly adsorbent with abundant of source to remove methylene blue (MB) from water samples. Sawdust solid-phase extraction coupled with high-performance liquid chromatography was used for the extraction and determination of MB. In this study, an experimental data-based artificial neural network model is constructed to describe the performance of sawdust solid-phase extraction method for various operating conditions. The pH, time, amount of sawdust, and temperature were the input variables, while the percentage of extraction of MB was the output. The optimum operating condition was then determined by genetic algorithm method. The optimized conditions were obtained as follows: 11.5, 22.0 min, 0.3 g, and 26.0°C for pH of the solution, extraction time, amount of adsorbent, and temperature, respectively. Under these optimum conditions, the detection limit and relative standard deviation were 0.067 μg L(-1) and <2.4%, respectively. The Langmuir and Freundlich adsorption models were applied to describe the isotherm constant and for the removal and determination of MB from water samples. © The Author(s) 2013.

  19. Target-Centric Network Modeling

    DEFF Research Database (Denmark)

    Mitchell, Dr. William L.; Clark, Dr. Robert M.

    In Target-Centric Network Modeling: Case Studies in Analyzing Complex Intelligence Issues, authors Robert Clark and William Mitchell take an entirely new approach to teaching intelligence analysis. Unlike any other book on the market, it offers case study scenarios using actual intelligence......, and collaborative sharing in the process of creating a high-quality, actionable intelligence product. The case studies reflect the complexity of twenty-first century intelligence issues by dealing with multi-layered target networks that cut across political, economic, social, technological, and military issues....... Working through these cases, students will learn to manage and evaluate realistic intelligence accounts....

  20. Biological transportation networks: Modeling and simulation

    KAUST Repository

    Albi, Giacomo

    2015-09-15

    We present a model for biological network formation originally introduced by Cai and Hu [Adaptation and optimization of biological transport networks, Phys. Rev. Lett. 111 (2013) 138701]. The modeling of fluid transportation (e.g., leaf venation and angiogenesis) and ion transportation networks (e.g., neural networks) is explained in detail and basic analytical features like the gradient flow structure of the fluid transportation network model and the impact of the model parameters on the geometry and topology of network formation are analyzed. We also present a numerical finite-element based discretization scheme and discuss sample cases of network formation simulations.

  1. Integrating public transort networks in the axial model

    NARCIS (Netherlands)

    Gil, J.

    2012-01-01

    This study presents a first step in the development of a model that integrates public transport networks with the space syntax axial model, towards a network model that can describe the multi?modal movement structure of a city and study its patterns and flows. It describes the method for building an

  2. A Model of Genetic Variation in Human Social Networks

    CERN Document Server

    Fowler, James H; Christakis, Nicholas A

    2008-01-01

    Social networks influence the evolution of cooperation and they exhibit strikingly systematic patterns across a wide range of human contexts. Both of these facts suggest that variation in the topological attributes of human social networks might have a genetic basis. While genetic variation accounts for a significant portion of the variation in many complex social behaviors, the heritability of egocentric social network attributes is unknown. Here we show that three of these attributes (in-degree, transitivity, and centrality) are heritable. We then develop a "mirror network" method to test extant network models and show that none accounts for observed genetic variation in human social networks. We propose an alternative "attract and introduce" model that generates significant heritability as well as other important network features, and we show that this model with two simple forms of heterogeneity is well suited to the modeling of real social networks in humans. These results suggest that natural selection ...

  3. QSAR modelling using combined simple competitive learning networks and RBF neural networks.

    Science.gov (United States)

    Sheikhpour, R; Sarram, M A; Rezaeian, M; Sheikhpour, E

    2018-04-01

    The aim of this study was to propose a QSAR modelling approach based on the combination of simple competitive learning (SCL) networks with radial basis function (RBF) neural networks for predicting the biological activity of chemical compounds. The proposed QSAR method consisted of two phases. In the first phase, an SCL network was applied to determine the centres of an RBF neural network. In the second phase, the RBF neural network was used to predict the biological activity of various phenols and Rho kinase (ROCK) inhibitors. The predictive ability of the proposed QSAR models was evaluated and compared with other QSAR models using external validation. The results of this study showed that the proposed QSAR modelling approach leads to better performances than other models in predicting the biological activity of chemical compounds. This indicated the efficiency of simple competitive learning networks in determining the centres of RBF neural networks.

  4. On traffic modelling in GPRS networks

    DEFF Research Database (Denmark)

    Madsen, Tatiana Kozlova; Schwefel, Hans-Peter; Prasad, Ramjee

    2005-01-01

    Optimal design and dimensioning of wireless data networks, such as GPRS, requires the knowledge of traffic characteristics of different data services. This paper presents an in-detail analysis of an IP-level traffic measurements taken in an operational GPRS network. The data measurements reported...... here are done at the Gi interface. The aim of this paper is to reveal some key statistics of GPRS data applications and to validate if the existing traffic models can adequately describe traffic volume and inter-arrival time distribution for different services. Additionally, we present a method of user...

  5. Energy modelling in sensor networks

    Directory of Open Access Journals (Sweden)

    D. Schmidt

    2007-06-01

    Full Text Available Wireless sensor networks are one of the key enabling technologies for the vision of ambient intelligence. Energy resources for sensor nodes are very scarce. A key challenge is the design of energy efficient communication protocols. Models of the energy consumption are needed to accurately simulate the efficiency of a protocol or application design, and can also be used for automatic energy optimizations in a model driven design process. We propose a novel methodology to create models for sensor nodes based on few simple measurements. In a case study the methodology was used to create models for MICAz nodes. The models were integrated in a simulation environment as well as in a SDL runtime framework of a model driven design process. Measurements on a test application that was created automatically from an SDL specification showed an 80% reduction in energy consumption compared to an implementation without power saving strategies.

  6. Generalization performance of regularized neural network models

    DEFF Research Database (Denmark)

    Larsen, Jan; Hansen, Lars Kai

    1994-01-01

    Architecture optimization is a fundamental problem of neural network modeling. The optimal architecture is defined as the one which minimizes the generalization error. This paper addresses estimation of the generalization performance of regularized, complete neural network models. Regularization...

  7. Plant Growth Models Using Artificial Neural Networks

    Science.gov (United States)

    Bubenheim, David

    1997-01-01

    In this paper, we descrive our motivation and approach to devloping models and the neural network architecture. Initial use of the artificial neural network for modeling the single plant process of transpiration is presented.

  8. Introducing Synchronisation in Deterministic Network Models

    DEFF Research Database (Denmark)

    Schiøler, Henrik; Jessen, Jan Jakob; Nielsen, Jens Frederik D.

    2006-01-01

    The paper addresses performance analysis for distributed real time systems through deterministic network modelling. Its main contribution is the introduction and analysis of models for synchronisation between tasks and/or network elements. Typical patterns of synchronisation are presented leading...

  9. Exploration Knowledge Sharing Networks Using Social Network Analysis Methods

    Directory of Open Access Journals (Sweden)

    Győző Attila Szilágyi

    2017-10-01

    Full Text Available Knowledge sharing within organization is one of the key factor for success. The organization, where knowledge sharing takes place faster and more efficiently, is able to adapt to changes in the market environment more successfully, and as a result, it may obtain a competitive advantage. Knowledge sharing in an organization is carried out through formal and informal human communication contacts during work. This forms a multi-level complex network whose quantitative and topological characteristics largely determine how quickly and to what extent the knowledge travels within organization. The study presents how different networks of knowledge sharing in the organization can be explored by means of network analysis methods through a case study, and which role play the properties of these networks in fast and sufficient spread of knowledge in organizations. The study also demonstrates the practical applications of our research results. Namely, on the basis of knowledge sharing educational strategies can be developed in an organization, and further, competitiveness of an organization may increase due to those strategies’ application.

  10. Propagating semantic information in biochemical network models

    Directory of Open Access Journals (Sweden)

    Schulz Marvin

    2012-01-01

    Full Text Available Abstract Background To enable automatic searches, alignments, and model combination, the elements of systems biology models need to be compared and matched across models. Elements can be identified by machine-readable biological annotations, but assigning such annotations and matching non-annotated elements is tedious work and calls for automation. Results A new method called "semantic propagation" allows the comparison of model elements based not only on their own annotations, but also on annotations of surrounding elements in the network. One may either propagate feature vectors, describing the annotations of individual elements, or quantitative similarities between elements from different models. Based on semantic propagation, we align partially annotated models and find annotations for non-annotated model elements. Conclusions Semantic propagation and model alignment are included in the open-source library semanticSBML, available on sourceforge. Online services for model alignment and for annotation prediction can be used at http://www.semanticsbml.org.

  11. Utilization of Selected Data Mining Methods for Communication Network Analysis

    Directory of Open Access Journals (Sweden)

    V. Ondryhal

    2011-06-01

    Full Text Available The aim of the project was to analyze the behavior of military communication networks based on work with real data collected continuously since 2005. With regard to the nature and amount of the data, data mining methods were selected for the purpose of analyses and experiments. The quality of real data is often insufficient for an immediate analysis. The article presents the data cleaning operations which have been carried out with the aim to improve the input data sample to obtain reliable models. Gradually, by means of properly chosen SW, network models were developed to verify generally valid patterns of network behavior as a bulk service. Furthermore, unlike the commercially available communication networks simulators, the models designed allowed us to capture nonstandard models of network behavior under an increased load, verify the correct sizing of the network to the increased load, and thus test its reliability. Finally, based on previous experience, the models enabled us to predict emergency situations with a reasonable accuracy.

  12. Mean field methods for cortical network dynamics

    DEFF Research Database (Denmark)

    Hertz, J.; Lerchner, Alexander; Ahmadi, M.

    2004-01-01

    We review the use of mean field theory for describing the dynamics of dense, randomly connected cortical circuits. For a simple network of excitatory and inhibitory leaky integrate- and-fire neurons, we can show how the firing irregularity, as measured by the Fano factor, increases...... with the strength of the synapses in the network and with the value to which the membrane potential is reset after a spike. Generalizing the model to include conductance-based synapses gives insight into the connection between the firing statistics and the high- conductance state observed experimentally in visual...

  13. Combination methods for identifying influential nodes in networks

    Science.gov (United States)

    Gao, Chao; Zhong, Lu; Li, Xianghua; Zhang, Zili; Shi, Ning

    2015-11-01

    Identifying influential nodes is of theoretical significance in many domains. Although lots of methods have been proposed to solve this problem, their evaluations are under single-source attack in scale-free networks. Meanwhile, some researches have speculated that the combinations of some methods may achieve more optimal results. In order to evaluate this speculation and design a universal strategy suitable for different types of networks under the consideration of multi-source attacks, this paper proposes an attribute fusion method with two independent strategies to reveal the correlation of existing ranking methods and indicators. One is based on feature union (FU) and the other is based on feature ranking (FR). Two different propagation models in the fields of recommendation system and network immunization are used to simulate the efficiency of our proposed method. Experimental results show that our method can enlarge information spreading and restrain virus propagation in the application of recommendation system and network immunization in different types of networks under the condition of multi-source attacks.

  14. Random field Ising model and community structure in complex networks

    Science.gov (United States)

    Son, S.-W.; Jeong, H.; Noh, J. D.

    2006-04-01

    We propose a method to determine the community structure of a complex network. In this method the ground state problem of a ferromagnetic random field Ising model is considered on the network with the magnetic field Bs = +∞, Bt = -∞, and Bi≠s,t=0 for a node pair s and t. The ground state problem is equivalent to the so-called maximum flow problem, which can be solved exactly numerically with the help of a combinatorial optimization algorithm. The community structure is then identified from the ground state Ising spin domains for all pairs of s and t. Our method provides a criterion for the existence of the community structure, and is applicable equally well to unweighted and weighted networks. We demonstrate the performance of the method by applying it to the Barabási-Albert network, Zachary karate club network, the scientific collaboration network, and the stock price correlation network. (Ising, Potts, etc.)

  15. Network Bandwidth Utilization Forecast Model on High Bandwidth Network

    Energy Technology Data Exchange (ETDEWEB)

    Yoo, Wucherl; Sim, Alex

    2014-07-07

    With the increasing number of geographically distributed scientific collaborations and the scale of the data size growth, it has become more challenging for users to achieve the best possible network performance on a shared network. We have developed a forecast model to predict expected bandwidth utilization for high-bandwidth wide area network. The forecast model can improve the efficiency of resource utilization and scheduling data movements on high-bandwidth network to accommodate ever increasing data volume for large-scale scientific data applications. Univariate model is developed with STL and ARIMA on SNMP path utilization data. Compared with traditional approach such as Box-Jenkins methodology, our forecast model reduces computation time by 83.2percent. It also shows resilience against abrupt network usage change. The accuracy of the forecast model is within the standard deviation of the monitored measurements.

  16. Network bandwidth utilization forecast model on high bandwidth networks

    Energy Technology Data Exchange (ETDEWEB)

    Yoo, Wuchert (William) [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Sim, Alex [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)

    2015-03-30

    With the increasing number of geographically distributed scientific collaborations and the scale of the data size growth, it has become more challenging for users to achieve the best possible network performance on a shared network. We have developed a forecast model to predict expected bandwidth utilization for high-bandwidth wide area network. The forecast model can improve the efficiency of resource utilization and scheduling data movements on high-bandwidth network to accommodate ever increasing data volume for large-scale scientific data applications. Univariate model is developed with STL and ARIMA on SNMP path utilization data. Compared with traditional approach such as Box-Jenkins methodology, our forecast model reduces computation time by 83.2%. It also shows resilience against abrupt network usage change. The accuracy of the forecast model is within the standard deviation of the monitored measurements.

  17. S-curve networks and a new method for estimating degree distributions of complex networks

    CERN Document Server

    Guo, Jin-Li

    2010-01-01

    In the study of complex networks almost all theoretical models are infinite growth, but the size of actual networks is finite. According to statistics from the China Internet IPv4 addresses, we propose a forecasting model by using S curve (Logistic curve). The growing trend of IPv4 addresses in China is forecasted. There are some reference value for optimizing the distribution of IPv4 address resource and the development of IPv6. Based on the laws of IPv4 growth, that is, the bulk growth and the finitely growing limit, we propose a finite network model with the bulk growth. The model is called S-curve network. Analysis demonstrates that the analytic method based on uniform distributions (i.e., Barab\\'asi-Albert method) is not suitable for the network. We develop a new method to predict the growth dynamics of the individual nodes, and use this to calculate analytically the connectivity distribution and the scaling exponents. The analytical result agrees with the simulation well, obeying an approximately power-...

  18. Reduction Method for Active Distribution Networks

    DEFF Research Database (Denmark)

    Raboni, Pietro; Chen, Zhe

    2013-01-01

    On-line security assessment is traditionally performed by Transmission System Operators at the transmission level, ignoring the effective response of distributed generators and small loads. On the other hand the required computation time and amount of real time data for including Distribution Net...... by comparing the results obtained in PSCAD® with the detailed network model and with the reduced one. Moreover the control schemes of a wind turbine and a photovoltaic plant included in the detailed network model are described.......On-line security assessment is traditionally performed by Transmission System Operators at the transmission level, ignoring the effective response of distributed generators and small loads. On the other hand the required computation time and amount of real time data for including Distribution...

  19. A Cascade-Based Emergency Model for Water Distribution Network

    Directory of Open Access Journals (Sweden)

    Qing Shuang

    2015-01-01

    Full Text Available Water distribution network is important in the critical physical infrastructure systems. The paper studies the emergency resource strategies on water distribution network with the approach of complex network and cascading failures. The model of cascade-based emergency for water distribution network is built. The cascade-based model considers the network topology analysis and hydraulic analysis to provide a more realistic result. A load redistribution function with emergency recovery mechanisms is established. From the aspects of uniform distribution, node betweenness, and node pressure, six recovery strategies are given to reflect the network topology and the failure information, respectively. The recovery strategies are evaluated with the complex network indicators to describe the failure scale and failure velocity. The proposed method is applied by an illustrative example. The results showed that the recovery strategy considering the node pressure can enhance the network robustness effectively. Besides, this strategy can reduce the failure nodes and generate the least failure nodes per time.

  20. Computer methods in electric network analysis

    Energy Technology Data Exchange (ETDEWEB)

    Saver, P.; Hajj, I.; Pai, M.; Trick, T.

    1983-06-01

    The computational algorithms utilized in power system analysis have more than just a minor overlap with those used in electronic circuit computer aided design. This paper describes the computer methods that are common to both areas and highlights the differences in application through brief examples. Recognizing this commonality has stimulated the exchange of useful techniques in both areas and has the potential of fostering new approaches to electric network analysis through the interchange of ideas.

  1. An acoustical model based monitoring network

    NARCIS (Netherlands)

    Wessels, P.W.; Basten, T.G.H.; Eerden, F.J.M. van der

    2010-01-01

    In this paper the approach for an acoustical model based monitoring network is demonstrated. This network is capable of reconstructing a noise map, based on the combination of measured sound levels and an acoustic model of the area. By pre-calculating the sound attenuation within the network the

  2. An adaptive complex network model for brain functional networks.

    Directory of Open Access Journals (Sweden)

    Ignacio J Gomez Portillo

    Full Text Available Brain functional networks are graph representations of activity in the brain, where the vertices represent anatomical regions and the edges their functional connectivity. These networks present a robust small world topological structure, characterized by highly integrated modules connected sparsely by long range links. Recent studies showed that other topological properties such as the degree distribution and the presence (or absence of a hierarchical structure are not robust, and show different intriguing behaviors. In order to understand the basic ingredients necessary for the emergence of these complex network structures we present an adaptive complex network model for human brain functional networks. The microscopic units of the model are dynamical nodes that represent active regions of the brain, whose interaction gives rise to complex network structures. The links between the nodes are chosen following an adaptive algorithm that establishes connections between dynamical elements with similar internal states. We show that the model is able to describe topological characteristics of human brain networks obtained from functional magnetic resonance imaging studies. In particular, when the dynamical rules of the model allow for integrated processing over the entire network scale-free non-hierarchical networks with well defined communities emerge. On the other hand, when the dynamical rules restrict the information to a local neighborhood, communities cluster together into larger ones, giving rise to a hierarchical structure, with a truncated power law degree distribution.

  3. A novel Bayesian learning method for information aggregation in modular neural networks

    DEFF Research Database (Denmark)

    Wang, Pan; Xu, Lida; Zhou, Shang-Ming

    2010-01-01

    Modular neural network is a popular neural network model which has many successful applications. In this paper, a sequential Bayesian learning (SBL) is proposed for modular neural networks aiming at efficiently aggregating the outputs of members of the ensemble. The experimental results on eight...... benchmark problems have demonstrated that the proposed method can perform information aggregation efficiently in data modeling....

  4. Spectral Analysis Methods of Social Networks

    Directory of Open Access Journals (Sweden)

    P. G. Klyucharev

    2017-01-01

    Full Text Available Online social networks (such as Facebook, Twitter, VKontakte, etc. being an important channel for disseminating information are often used to arrange an impact on the social consciousness for various purposes - from advertising products or services to the full-scale information war thereby making them to be a very relevant object of research. The paper reviewed the analysis methods of social networks (primarily, online, based on the spectral theory of graphs. Such methods use the spectrum of the social graph, i.e. a set of eigenvalues of its adjacency matrix, and also the eigenvectors of the adjacency matrix.Described measures of centrality (in particular, centrality based on the eigenvector and PageRank, which reflect a degree of impact one or another user of the social network has. A very popular PageRank measure uses, as a measure of centrality, the graph vertices, the final probabilities of the Markov chain, whose matrix of transition probabilities is calculated on the basis of the adjacency matrix of the social graph. The vector of final probabilities is an eigenvector of the matrix of transition probabilities.Presented a method of dividing the graph vertices into two groups. It is based on maximizing the network modularity by computing the eigenvector of the modularity matrix.Considered a method for detecting bots based on the non-randomness measure of a graph to be computed using the spectral coordinates of vertices - sets of eigenvector components of the adjacency matrix of a social graph.In general, there are a number of algorithms to analyse social networks based on the spectral theory of graphs. These algorithms show very good results, but their disadvantage is the relatively high (albeit polynomial computational complexity for large graphs.At the same time it is obvious that the practical application capacity of the spectral graph theory methods is still underestimated, and it may be used as a basis to develop new methods.The work

  5. Kinematic Structural Modelling in Bayesian Networks

    Science.gov (United States)

    Schaaf, Alexander; de la Varga, Miguel; Florian Wellmann, J.

    2017-04-01

    We commonly capture our knowledge about the spatial distribution of distinct geological lithologies in the form of 3-D geological models. Several methods exist to create these models, each with its own strengths and limitations. We present here an approach to combine the functionalities of two modeling approaches - implicit interpolation and kinematic modelling methods - into one framework, while explicitly considering parameter uncertainties and thus model uncertainty. In recent work, we proposed an approach to implement implicit modelling algorithms into Bayesian networks. This was done to address the issues of input data uncertainty and integration of geological information from varying sources in the form of geological likelihood functions. However, one general shortcoming of implicit methods is that they usually do not take any physical constraints into consideration, which can result in unrealistic model outcomes and artifacts. On the other hand, kinematic structural modelling intends to reconstruct the history of a geological system based on physically driven kinematic events. This type of modelling incorporates simplified, physical laws into the model, at the cost of a substantial increment of usable uncertain parameters. In the work presented here, we show an integration of these two different modelling methodologies, taking advantage of the strengths of both of them. First, we treat the two types of models separately, capturing the information contained in the kinematic models and their specific parameters in the form of likelihood functions, in order to use them in the implicit modelling scheme. We then go further and combine the two modelling approaches into one single Bayesian network. This enables the direct flow of information between the parameters of the kinematic modelling step and the implicit modelling step and links the exclusive input data and likelihoods of the two different modelling algorithms into one probabilistic inference framework. In

  6. Performance Modeling for Heterogeneous Wireless Networks with Multiservice Overflow Traffic

    DEFF Research Database (Denmark)

    Huang, Qian; Ko, King-Tim; Iversen, Villy Bæk

    2009-01-01

    Performance modeling is important for the purpose of developing efficient dimensioning tools for large complicated networks. But it is difficult to achieve in heterogeneous wireless networks, where different networks have different statistical characteristics in service and traffic models....... Multiservice loss analysis based on multi-dimensional Markov chain becomes intractable in these networks due to intensive computations required. This paper focuses on performance modeling for heterogeneous wireless networks based on a hierarchical overlay infrastructure. A method based on decomposition...... of the correlated traffic is used to achieve an approximate performance modeling for multiservice in hierarchical heterogeneous wireless networks with overflow traffic. The accuracy of the approximate performance obtained by our proposed modeling is verified by simulations....

  7. Piecewise linear and Boolean models of chemical reaction networks.

    Science.gov (United States)

    Veliz-Cuba, Alan; Kumar, Ajit; Josić, Krešimir

    2014-12-01

    Models of biochemical networks are frequently complex and high-dimensional. Reduction methods that preserve important dynamical properties are therefore essential for their study. Interactions in biochemical networks are frequently modeled using Hill functions ([Formula: see text]). Reduced ODEs and Boolean approximations of such model networks have been studied extensively when the exponent [Formula: see text] is large. However, while the case of small constant [Formula: see text] appears in practice, it is not well understood. We provide a mathematical analysis of this limit and show that a reduction to a set of piecewise linear ODEs and Boolean networks can be mathematically justified. The piecewise linear systems have closed-form solutions that closely track those of the fully nonlinear model. The simpler, Boolean network can be used to study the qualitative behavior of the original system. We justify the reduction using geometric singular perturbation theory and compact convergence, and illustrate the results in network models of a toggle switch and an oscillator.

  8. Transmission network expansion planning based on hybridization model of neural networks and harmony search algorithm

    Directory of Open Access Journals (Sweden)

    Mohammad Taghi Ameli

    2012-01-01

    Full Text Available Transmission Network Expansion Planning (TNEP is a basic part of power network planning that determines where, when and how many new transmission lines should be added to the network. So, the TNEP is an optimization problem in which the expansion purposes are optimized. Artificial Intelligence (AI tools such as Genetic Algorithm (GA, Simulated Annealing (SA, Tabu Search (TS and Artificial Neural Networks (ANNs are methods used for solving the TNEP problem. Today, by using the hybridization models of AI tools, we can solve the TNEP problem for large-scale systems, which shows the effectiveness of utilizing such models. In this paper, a new approach to the hybridization model of Probabilistic Neural Networks (PNNs and Harmony Search Algorithm (HSA was used to solve the TNEP problem. Finally, by considering the uncertain role of the load based on a scenario technique, this proposed model was tested on the Garver’s 6-bus network.

  9. Entropy Characterization of Random Network Models

    Directory of Open Access Journals (Sweden)

    Pedro J. Zufiria

    2017-06-01

    Full Text Available This paper elaborates on the Random Network Model (RNM as a mathematical framework for modelling and analyzing the generation of complex networks. Such framework allows the analysis of the relationship between several network characterizing features (link density, clustering coefficient, degree distribution, connectivity, etc. and entropy-based complexity measures, providing new insight on the generation and characterization of random networks. Some theoretical and computational results illustrate the utility of the proposed framework.

  10. Completely random measures for modelling block-structured sparse networks

    DEFF Research Database (Denmark)

    Herlau, Tue; Schmidt, Mikkel Nørgaard; Mørup, Morten

    2016-01-01

    Many statistical methods for network data parameterize the edge-probability by attributing latent traits to the vertices such as block structure and assume exchangeability in the sense of the Aldous-Hoover representation theorem. Empirical studies of networks indicate that many real-world networks...... [2014] proposed the use of a different notion of exchangeability due to Kallenberg [2006] and obtained a network model which admits power-law behaviour while retaining desirable statistical properties, however this model does not capture latent vertex traits such as block-structure. In this work we re......-introduce the use of block-structure for network models obeying allenberg’s notion of exchangeability and thereby obtain a model which admits the inference of block-structure and edge inhomogeneity. We derive a simple expression for the likelihood and an efficient sampling method. The obtained model...

  11. Heterogeneous information network model for equipment-standard system

    Science.gov (United States)

    Yin, Liang; Shi, Li-Chen; Zhao, Jun-Yan; Du, Song-Yang; Xie, Wen-Bo; Yuan, Fei; Chen, Duan-Bing

    2018-01-01

    Entity information network is used to describe structural relationships between entities. Taking advantage of its extension and heterogeneity, entity information network is more and more widely applied to relationship modeling. Recent years, lots of researches about entity information network modeling have been proposed, while seldom of them concentrate on equipment-standard system with properties of multi-layer, multi-dimension and multi-scale. In order to efficiently deal with some complex issues in equipment-standard system such as standard revising, standard controlling, and production designing, a heterogeneous information network model for equipment-standard system is proposed in this paper. Three types of entities and six types of relationships are considered in the proposed model. Correspondingly, several different similarity-measuring methods are used in the modeling process. The experiments show that the heterogeneous information network model established in this paper can reflect relationships between entities accurately. Meanwhile, the modeling process has a good performance on time consumption.

  12. Modeling Diagnostic Assessments with Bayesian Networks

    Science.gov (United States)

    Almond, Russell G.; DiBello, Louis V.; Moulder, Brad; Zapata-Rivera, Juan-Diego

    2007-01-01

    This paper defines Bayesian network models and examines their applications to IRT-based cognitive diagnostic modeling. These models are especially suited to building inference engines designed to be synchronous with the finer grained student models that arise in skills diagnostic assessment. Aspects of the theory and use of Bayesian network models…

  13. Tumor Diagnosis Using Backpropagation Neural Network Method

    Science.gov (United States)

    Ma, Lixing; Looney, Carl; Sukuta, Sydney; Bruch, Reinhard; Afanasyeva, Natalia

    1998-05-01

    For characterization of skin cancer, an artificial neural network (ANN) method has been developed to diagnose normal tissue, benign tumor and melanoma. The pattern recognition is based on a three-layer neural network fuzzy learning system. In this study, the input neuron data set is the Fourier Transform infrared (FT-IR)spectrum obtained by a new Fiberoptic Evanescent Wave Fourier Transform Infrared (FEW-FTIR) spectroscopy method in the range of 1480 to 1850 cm-1. Ten input features are extracted from the absorbency values in this region. A single hidden layer of neural nodes with sigmoids activation functions clusters the feature space into small subclasses and the output nodes are separated in different nonconvex classes to permit nonlinear discrimination of disease states. The output is classified as three classes: normal tissue, benign tumor and melanoma. The results obtained from the neural network pattern recognition are shown to be consistent with traditional medical diagnosis. Input features have also been extracted from the absorbency spectra using chemical factor analysis. These abstract features or factors are also used in the classification.

  14. Inferring gene regression networks with model trees

    Directory of Open Access Journals (Sweden)

    Aguilar-Ruiz Jesus S

    2010-10-01

    Full Text Available Abstract Background Novel strategies are required in order to handle the huge amount of data produced by microarray technologies. To infer gene regulatory networks, the first step is to find direct regulatory relationships between genes building the so-called gene co-expression networks. They are typically generated using correlation statistics as pairwise similarity measures. Correlation-based methods are very useful in order to determine whether two genes have a strong global similarity but do not detect local similarities. Results We propose model trees as a method to identify gene interaction networks. While correlation-based methods analyze each pair of genes, in our approach we generate a single regression tree for each gene from the remaining genes. Finally, a graph from all the relationships among output and input genes is built taking into account whether the pair of genes is statistically significant. For this reason we apply a statistical procedure to control the false discovery rate. The performance of our approach, named REGNET, is experimentally tested on two well-known data sets: Saccharomyces Cerevisiae and E.coli data set. First, the biological coherence of the results are tested. Second the E.coli transcriptional network (in the Regulon database is used as control to compare the results to that of a correlation-based method. This experiment shows that REGNET performs more accurately at detecting true gene associations than the Pearson and Spearman zeroth and first-order correlation-based methods. Conclusions REGNET generates gene association networks from gene expression data, and differs from correlation-based methods in that the relationship between one gene and others is calculated simultaneously. Model trees are very useful techniques to estimate the numerical values for the target genes by linear regression functions. They are very often more precise than linear regression models because they can add just different linear

  15. Optimization of DRASTIC method by artificial neural network, nitrate vulnerability index, and composite DRASTIC models to assess groundwater vulnerability for unconfined aquifer of Shiraz Plain, Iran.

    Science.gov (United States)

    Baghapour, Mohammad Ali; Fadaei Nobandegani, Amir; Talebbeydokhti, Nasser; Bagherzadeh, Somayeh; Nadiri, Ata Allah; Gharekhani, Maryam; Chitsazan, Nima

    2016-01-01

    Extensive human activities and unplanned land uses have put groundwater resources of Shiraz plain at a high risk of nitrate pollution, causing several environmental and human health issues. To address these issues, water resources managers utilize groundwater vulnerability assessment and determination of protection. This study aimed to prepare the vulnerability maps of Shiraz aquifer by using Composite DRASTIC index, Nitrate Vulnerability index, and artificial neural network and also to compare their efficiency. The parameters of the indexes that were employed in this study are: depth to water table, net recharge, aquifer media, soil media, topography, impact of the vadose zone, hydraulic conductivity, and land use. These parameters were rated, weighted, and integrated using GIS, and then, used to develop the risk maps of Shiraz aquifer. The results indicated that the southeastern part of the aquifer was at the highest potential risk. Given the distribution of groundwater nitrate concentrations from the wells in the underlying aquifer, the artificial neural network model offered greater accuracy compared to the other two indexes. The study concluded that the artificial neural network model is an effective model to improve the DRASTIC index and provides a confident estimate of the pollution risk. As intensive agricultural activities are the dominant land use and water table is shallow in the vulnerable zones, optimized irrigation techniques and a lower rate of fertilizers are suggested. The findings of our study could be used as a scientific basis in future for sustainable groundwater management in Shiraz plain.

  16. Assessing Partnership Alternatives in an IT Network Employing Analytical Methods

    Directory of Open Access Journals (Sweden)

    Vahid Reza Salamat

    2016-01-01

    Full Text Available One of the main critical success factors for the companies is their ability to build and maintain an effective collaborative network. This is more critical in the IT industry where the development of sustainable competitive advantage requires an integration of various resources, platforms, and capabilities provided by various actors. Employing such a collaborative network will dramatically change the operations management and promote flexibility and agility. Despite its importance, there is a lack of an analytical tool on collaborative network building process. In this paper, we propose an optimization model employing AHP and multiobjective programming for collaborative network building process based on two interorganizational relationships’ theories, namely, (i transaction cost theory and (ii resource-based view, which are representative of short-term and long-term considerations. The five different methods were employed to solve the formulation and their performances were compared. The model is implemented in an IT company who was in process of developing a large-scale enterprise resource planning (ERP system. The results show that the collaborative network formed through this selection process was more efficient in terms of cost, time, and development speed. The framework offers novel theoretical underpinning and analytical solutions and can be used as an effective tool in selecting network alternatives.

  17. Bayesian Network Webserver: a comprehensive tool for biological network modeling.

    Science.gov (United States)

    Ziebarth, Jesse D; Bhattacharya, Anindya; Cui, Yan

    2013-11-01

    The Bayesian Network Webserver (BNW) is a platform for comprehensive network modeling of systems genetics and other biological datasets. It allows users to quickly and seamlessly upload a dataset, learn the structure of the network model that best explains the data and use the model to understand relationships between network variables. Many datasets, including those used to create genetic network models, contain both discrete (e.g. genotype) and continuous (e.g. gene expression traits) variables, and BNW allows for modeling hybrid datasets. Users of BNW can incorporate prior knowledge during structure learning through an easy-to-use structural constraint interface. After structure learning, users are immediately presented with an interactive network model, which can be used to make testable hypotheses about network relationships. BNW, including a downloadable structure learning package, is available at http://compbio.uthsc.edu/BNW. (The BNW interface for adding structural constraints uses HTML5 features that are not supported by current version of Internet Explorer. We suggest using other browsers (e.g. Google Chrome or Mozilla Firefox) when accessing BNW). ycui2@uthsc.edu. Supplementary data are available at Bioinformatics online.

  18. Reverse Engineering Cellular Networks with Information Theoretic Methods

    Directory of Open Access Journals (Sweden)

    Julio R. Banga

    2013-05-01

    Full Text Available Building mathematical models of cellular networks lies at the core of systems biology. It involves, among other tasks, the reconstruction of the structure of interactions between molecular components, which is known as network inference or reverse engineering. Information theory can help in the goal of extracting as much information as possible from the available data. A large number of methods founded on these concepts have been proposed in the literature, not only in biology journals, but in a wide range of areas. Their critical comparison is difficult due to the different focuses and the adoption of different terminologies. Here we attempt to review some of the existing information theoretic methodologies for network inference, and clarify their differences. While some of these methods have achieved notable success, many challenges remain, among which we can mention dealing with incomplete measurements, noisy data, counterintuitive behaviour emerging from nonlinear relations or feedback loops, and computational burden of dealing with large data sets.

  19. A Latent Variable Clustering Method for Wireless Sensor Networks

    DEFF Research Database (Denmark)

    Vasilev, Vladislav; Iliev, Georgi; Poulkov, Vladimir

    2016-01-01

    In this paper we derive a clustering method based on the Hidden Conditional Random Field (HCRF) model in order to maximizes the performance of a wireless sensor. Our novel approach to clustering in this paper is in the application of an index invariant graph that we defined in a previous work...... obtain by running simulations of a time dynamic sensor network. The performance of the proposed method outperforms the existing clustering methods, such as the Girvan-Newmans algorithm, the Kargers algorithm and the Spectral Clustering method, in terms of packet acceptance probability and delay....

  20. Evaluation of partnerships in a transnational family violence prevention network using an integrated knowledge translation and exchange model: a mixed methods study.

    Science.gov (United States)

    Kothari, Anita; Sibbald, Shannon L; Wathen, C Nadine

    2014-05-23

    Family violence is a significant and complex public health problem that demands collaboration between researchers, practitioners, and policymakers for systemic, sustainable solutions. An integrated knowledge translation network was developed to support joint research production and application in the area. The purpose of this study was to determine the extent to which the international Preventing Violence Across the Lifespan (PreVAiL) Research Network built effective partnerships among its members, with a focus on the knowledge user partner perspective. This mixed-methods study employed a combination of questionnaire and semi-structured interviews to understand partnerships two years after PreVAiL's inception. The questionnaire examined communication, collaborative research, dissemination of research, research findings, negotiation, partnership enhancement, information needs, rapport, and commitment. The interviews elicited feedback about partners' experiences with being part of the network. Five main findings were highlighted: i) knowledge user partner involvement varied across activities, ranging from 11% to 79% participation rates; ii) partners and researchers generally converged on their assessment of communication indicators; iii) partners valued the network at both an individual level and to fulfill their organizations' mandates; iv) being part of PreVAiL allowed partners to readily contact researchers, and partners felt comfortable acting as an intermediary between PreVAiL and the rest of their own organization; v) application of research was just emerging; partners needed more actionable insights to determine ways to move forward given the research at that point in time. Our results demonstrate the importance of developing and nurturing strong partnerships for integrated knowledge translation. Our findings are applicable to other network-oriented partnerships where a diversity of stakeholders work to address complex, multi-faceted public health problems.

  1. Spectral Methods for Immunization of Large Networks

    Directory of Open Access Journals (Sweden)

    Muhammad Ahmad

    2017-11-01

    Full Text Available Given a network of nodes, minimizing the spread of a contagion using a limited budget is a well-studied problem with applications in network security, viral marketing, social networks, and public health. In real graphs, virus may infect a node which in turn infects its neighbour nodes and this may trigger an epidemic in the whole graph. The goal thus is to select the best k nodes (budget constraint that are immunized (vaccinated, screened, filtered so as the remaining graph is less prone to the epidemic. It is known that the problem is, in all practical models, computationally intractable even for moderate sized graphs. In this paper we employ ideas from spectral graph theory to define relevance and importance of nodes. Using novel graph theoretic techniques, we then design an efficient approximation algorithm to immunize the graph. Theoretical guarantees on the running time of our algorithm show that it is more efficient than any other known solution in the literature. We test the performance of our algorithm on several real world graphs. Experiments show that our algorithm scales well for large graphs and outperforms state of the art algorithms both in quality (containment of epidemic and efficiency (runtime and space complexity.

  2. Object Oriented Modeling Of Social Networks

    NARCIS (Netherlands)

    Zeggelink, Evelien P.H.; Oosten, Reinier van; Stokman, Frans N.

    1996-01-01

    The aim of this paper is to explain principles of object oriented modeling in the scope of modeling dynamic social networks. As such, the approach of object oriented modeling is advocated within the field of organizational research that focuses on networks. We provide a brief introduction into the

  3. Agent-based modeling and network dynamics

    CERN Document Server

    Namatame, Akira

    2016-01-01

    The book integrates agent-based modeling and network science. It is divided into three parts, namely, foundations, primary dynamics on and of social networks, and applications. The book begins with the network origin of agent-based models, known as cellular automata, and introduce a number of classic models, such as Schelling’s segregation model and Axelrod’s spatial game. The essence of the foundation part is the network-based agent-based models in which agents follow network-based decision rules. Under the influence of the substantial progress in network science in late 1990s, these models have been extended from using lattices into using small-world networks, scale-free networks, etc. The book also shows that the modern network science mainly driven by game-theorists and sociophysicists has inspired agent-based social scientists to develop alternative formation algorithms, known as agent-based social networks. The book reviews a number of pioneering and representative models in this family. Upon the gi...

  4. Model Correction Factor Method

    DEFF Research Database (Denmark)

    Christensen, Claus; Randrup-Thomsen, Søren; Morsing Johannesen, Johannes

    1997-01-01

    The model correction factor method is proposed as an alternative to traditional polynomial based response surface techniques in structural reliability considering a computationally time consuming limit state procedure as a 'black box'. The class of polynomial functions is replaced by a limit stat...

  5. Electromagnetic field computation by network methods

    CERN Document Server

    Felsen, Leopold B; Russer, Peter

    2009-01-01

    This monograph proposes a systematic and rigorous treatment of electromagnetic field representations in complex structures. The book presents new strong models by combining important computational methods. This is the last book of the late Leopold Felsen.

  6. Modeling data throughput on communication networks

    Energy Technology Data Exchange (ETDEWEB)

    Eldridge, J.M.

    1993-11-01

    New challenges in high performance computing and communications are driving the need for fast, geographically distributed networks. Applications such as modeling physical phenomena, interactive visualization, large data set transfers, and distributed supercomputing require high performance networking [St89][Ra92][Ca92]. One measure of a communication network`s performance is the time it takes to complete a task -- such as transferring a data file or displaying a graphics image on a remote monitor. Throughput, defined as the ratio of the number of useful data bits transmitted per the time required to transmit those bits, is a useful gauge of how well a communication system meets this performance measure. This paper develops and describes an analytical model of throughput. The model is a tool network designers can use to predict network throughput. It also provides insight into those parts of the network that act as a performance bottleneck.

  7. Developed hydraulic simulation model for water pipeline networks

    Directory of Open Access Journals (Sweden)

    A. Ayad

    2013-03-01

    Full Text Available A numerical method that uses linear graph theory is presented for both steady state, and extended period simulation in a pipe network including its hydraulic components (pumps, valves, junctions, etc.. The developed model is based on the Extended Linear Graph Theory (ELGT technique. This technique is modified to include new network components such as flow control valves and tanks. The technique also expanded for extended period simulation (EPS. A newly modified method for the calculation of updated flows improving the convergence rate is being introduced. Both benchmarks, ad Actual networks are analyzed to check the reliability of the proposed method. The results reveal the finer performance of the proposed method.

  8. Computational modeling of signal transduction networks: a pedagogical exposition.

    Science.gov (United States)

    Prasad, Ashok

    2012-01-01

    We give a pedagogical introduction to computational modeling of signal transduction networks, starting from explaining the representations of chemical reactions by differential equations via the law of mass action. We discuss elementary biochemical reactions such as Michaelis-Menten enzyme kinetics and cooperative binding, and show how these allow the representation of large networks as systems of differential equations. We discuss the importance of looking for simpler or reduced models, such as network motifs or dynamical motifs within the larger network, and describe methods to obtain qualitative behavior by bifurcation analysis, using freely available continuation software. We then discuss stochastic kinetics and show how to implement easy-to-use methods of rule-based modeling for stochastic simulations. We finally suggest some methods for comprehensive parameter sensitivity analysis, and discuss the insights that it could yield. Examples, including code to try out, are provided based on a paper that modeled Ras kinetics in thymocytes.

  9. A New Hybrid Method Logistic Regression and Feedforward Neural Network for Lung Cancer Data

    OpenAIRE

    Taner Tunç

    2012-01-01

    Logistic regression (LR) is a conventional statistical technique used for data classification problem. Logistic regression is a model-based method, and it uses nonlinear model structure. Another technique used for classification is feedforward artificial neural networks. Feedforward artificial neural network is a data-based method which can model nonlinear models through its activation function. In this study, a hybrid approach of model-based logistic regression technique and data-based artif...

  10. A novel word spotting method based on recurrent neural networks.

    Science.gov (United States)

    Frinken, Volkmar; Fischer, Andreas; Manmatha, R; Bunke, Horst

    2012-02-01

    Keyword spotting refers to the process of retrieving all instances of a given keyword from a document. In the present paper, a novel keyword spotting method for handwritten documents is described. It is derived from a neural network-based system for unconstrained handwriting recognition. As such it performs template-free spotting, i.e., it is not necessary for a keyword to appear in the training set. The keyword spotting is done using a modification of the CTC Token Passing algorithm in conjunction with a recurrent neural network. We demonstrate that the proposed systems outperform not only a classical dynamic time warping-based approach but also a modern keyword spotting system, based on hidden Markov models. Furthermore, we analyze the performance of the underlying neural networks when using them in a recognition task followed by keyword spotting on the produced transcription. We point out the advantages of keyword spotting when compared to classic text line recognition.

  11. Comparative analysis of quantitative efficiency evaluation methods for transportation networks.

    Science.gov (United States)

    He, Yuxin; Qin, Jin; Hong, Jian

    2017-01-01

    An effective evaluation of transportation network efficiency could offer guidance for the optimal control of urban traffic. Based on the introduction and related mathematical analysis of three quantitative evaluation methods for transportation network efficiency, this paper compares the information measured by them, including network structure, traffic demand, travel choice behavior and other factors which affect network efficiency. Accordingly, the applicability of various evaluation methods is discussed. Through analyzing different transportation network examples it is obtained that Q-H method could reflect the influence of network structure, traffic demand and user route choice behavior on transportation network efficiency well. In addition, the transportation network efficiency measured by this method and Braess's Paradox can be explained with each other, which indicates a better evaluation of the real operation condition of transportation network. Through the analysis of the network efficiency calculated by Q-H method, it can also be drawn that a specific appropriate demand is existed to a given transportation network. Meanwhile, under the fixed demand, both the critical network structure that guarantees the stability and the basic operation of the network and a specific network structure contributing to the largest value of the transportation network efficiency can be identified.

  12. A Method for Designing Assembly Tolerance Networks of Mechanical Assemblies

    Directory of Open Access Journals (Sweden)

    Yi Zhang

    2012-01-01

    Full Text Available When designing mechanical assemblies, assembly tolerance design is an important issue which must be seriously considered by designers. Assembly tolerances reflect functional requirements of assembling, which can be used to control assembling qualities and production costs. This paper proposes a new method for designing assembly tolerance networks of mechanical assemblies. The method establishes the assembly structure tree model of an assembly based on its product structure tree model. On this basis, assembly information model and assembly relation model are set up based on polychromatic sets (PS theory. According to the two models, the systems of location relation equations and interference relation equations are established. Then, using methods of topologically related surfaces (TTRS theory and variational geometric constraints (VGC theory, three VGC reasoning matrices are constructed. According to corresponding relations between VGCs and assembly tolerance types, the reasoning matrices of tolerance types are also established by using contour matrices of PS. Finally, an exemplary product is used to construct its assembly tolerance networks and meanwhile to verify the feasibility and effectiveness of the proposed method.

  13. Model-order reduction of biochemical reaction networks

    NARCIS (Netherlands)

    Rao, Shodhan; Schaft, Arjan van der; Eunen, Karen van; Bakker, Barbara M.; Jayawardhana, Bayu

    2013-01-01

    In this paper we propose a model-order reduction method for chemical reaction networks governed by general enzyme kinetics, including the mass-action and Michaelis-Menten kinetics. The model-order reduction method is based on the Kron reduction of the weighted Laplacian matrix which describes the

  14. Settings in Social Networks : a Measurement Model

    NARCIS (Netherlands)

    Schweinberger, Michael; Snijders, Tom A.B.

    2003-01-01

    A class of statistical models is proposed that aims to recover latent settings structures in social networks. Settings may be regarded as clusters of vertices. The measurement model is based on two assumptions. (1) The observed network is generated by hierarchically nested latent transitive

  15. Settings in social networks : A measurement model

    NARCIS (Netherlands)

    Schweinberger, M; Snijders, TAB

    2003-01-01

    A class of statistical models is proposed that aims to recover latent settings structures in social networks. Settings may be regarded as clusters of vertices. The measurement model is based on two assumptions. (1) The observed network is generated by hierarchically nested latent transitive

  16. Spinal Cord Injury Model System Information Network

    Science.gov (United States)

    ... the UAB-SCIMS Contact the UAB-SCIMS UAB Spinal Cord Injury Model System Newly Injured Health Daily Living Consumer ... Information Network The University of Alabama at Birmingham Spinal Cord Injury Model System (UAB-SCIMS) maintains this Information Network ...

  17. Radio Channel Modeling in Body Area Networks

    NARCIS (Netherlands)

    An, L.; Bentum, Marinus Jan; Meijerink, Arjan; Scanlon, W.G.

    2009-01-01

    A body area network (BAN) is a network of bodyworn or implanted electronic devices, including wireless sensors which can monitor body parameters or to de- tect movements. One of the big challenges in BANs is the propagation channel modeling. Channel models can be used to understand wave propagation

  18. Radio channel modeling in body area networks

    NARCIS (Netherlands)

    An, L.; Bentum, Marinus Jan; Meijerink, Arjan; Scanlon, W.G.

    2010-01-01

    A body area network (BAN) is a network of bodyworn or implanted electronic devices, including wireless sensors which can monitor body parameters or to detect movements. One of the big challenges in BANs is the propagation channel modeling. Channel models can be used to understand wave propagation in

  19. Network interconnections: an architectural reference model

    NARCIS (Netherlands)

    Butscher, B.; Lenzini, L.; Morling, R.; Vissers, C.A.; Popescu-Zeletin, R.; van Sinderen, Marten J.; Heger, D.; Krueger, G.; Spaniol, O.; Zorn, W.

    1985-01-01

    One of the major problems in understanding the different approaches in interconnecting networks of different technologies is the lack of reference to a general model. The paper develops the rationales for a reference model of network interconnection and focuses on the architectural implications for

  20. Quantitative methods for ecological network analysis.

    Science.gov (United States)

    Ulanowicz, Robert E

    2004-12-01

    The analysis of networks of ecological trophic transfers is a useful complement to simulation modeling in the quest for understanding whole-ecosystem dynamics. Trophic networks can be studied in quantitative and systematic fashion at several levels. Indirect relationships between any two individual taxa in an ecosystem, which often differ in either nature or magnitude from their direct influences, can be assayed using techniques from linear algebra. The same mathematics can also be employed to ascertain where along the trophic continuum any individual taxon is operating, or to map the web of connections into a virtual linear chain that summarizes trophodynamic performance by the system. Backtracking algorithms with pruning have been written which identify pathways for the recycle of materials and energy within the system. The pattern of such cycling often reveals modes of control or types of functions exhibited by various groups of taxa. The performance of the system as a whole at processing material and energy can be quantified using information theory. In particular, the complexity of process interactions can be parsed into separate terms that distinguish organized, efficient performance from the capacity for further development and recovery from disturbance. Finally, the sensitivities of the information-theoretic system indices appear to identify the dynamical bottlenecks in ecosystem functioning.

  1. Performance modeling of network data services

    Energy Technology Data Exchange (ETDEWEB)

    Haynes, R.A.; Pierson, L.G.

    1997-01-01

    Networks at major computational organizations are becoming increasingly complex. The introduction of large massively parallel computers and supercomputers with gigabyte memories are requiring greater and greater bandwidth for network data transfers to widely dispersed clients. For networks to provide adequate data transfer services to high performance computers and remote users connected to them, the networking components must be optimized from a combination of internal and external performance criteria. This paper describes research done at Sandia National Laboratories to model network data services and to visualize the flow of data from source to sink when using the data services.

  2. Learning Bayesian Network Model Structure from Data

    National Research Council Canada - National Science Library

    Margaritis, Dimitris

    2003-01-01

    In this thesis I address the important problem of the determination of the structure of directed statistical models, with the widely used class of Bayesian network models as a concrete vehicle of my ideas...

  3. NC truck network model development research.

    Science.gov (United States)

    2008-09-01

    This research develops a validated prototype truck traffic network model for North Carolina. The model : includes all counties and metropolitan areas of North Carolina and major economic areas throughout the : U.S. Geographic boundaries, population a...

  4. Modeling the self-similarity in complex networks based on Coulomb's law

    Science.gov (United States)

    Zhang, Haixin; Wei, Daijun; Hu, Yong; Lan, Xin; Deng, Yong

    2016-06-01

    Recently, self-similarity of complex networks have attracted much attention. Fractal dimension of complex network is an open issue. Hub repulsion plays an important role in fractal topologies. This paper models the repulsion among the nodes in the complex networks in calculation of the fractal dimension of the networks. Coulomb's law is adopted to represent the repulse between two nodes of the network quantitatively. A new method to calculate the fractal dimension of complex networks is proposed. The Sierpinski triangle network and some real complex networks are investigated. The results are illustrated to show that the new model of self-similarity of complex networks is reasonable and efficient.

  5. Network models in economics and finance

    CERN Document Server

    Pardalos, Panos; Rassias, Themistocles

    2014-01-01

    Using network models to investigate the interconnectivity in modern economic systems allows researchers to better understand and explain some economic phenomena. This volume presents contributions by known experts and active researchers in economic and financial network modeling. Readers are provided with an understanding of the latest advances in network analysis as applied to economics, finance, corporate governance, and investments. Moreover, recent advances in market network analysis  that focus on influential techniques for market graph analysis are also examined. Young researchers will find this volume particularly useful in facilitating their introduction to this new and fascinating field. Professionals in economics, financial management, various technologies, and network analysis, will find the network models presented in this book beneficial in analyzing the interconnectivity in modern economic systems.

  6. Deep-learning: investigating deep neural networks hyper-parameters and comparison of performance to shallow methods for modeling bioactivity data.

    Science.gov (United States)

    Koutsoukas, Alexios; Monaghan, Keith J; Li, Xiaoli; Huan, Jun

    2017-06-28

    In recent years, research in artificial neural networks has resurged, now under the deep-learning umbrella, and grown extremely popular. Recently reported success of DL techniques in crowd-sourced QSAR and predictive toxicology competitions has showcased these methods as powerful tools in drug-discovery and toxicology research. The aim of this work was dual, first large number of hyper-parameter configurations were explored to investigate how they affect the performance of DNNs and could act as starting points when tuning DNNs and second their performance was compared to popular methods widely employed in the field of cheminformatics namely Naïve Bayes, k-nearest neighbor, random forest and support vector machines. Moreover, robustness of machine learning methods to different levels of artificially introduced noise was assessed. The open-source Caffe deep-learning framework and modern NVidia GPU units were utilized to carry out this study, allowing large number of DNN configurations to be explored. We show that feed-forward deep neural networks are capable of achieving strong classification performance and outperform shallow methods across diverse activity classes when optimized. Hyper-parameters that were found to play critical role are the activation function, dropout regularization, number hidden layers and number of neurons. When compared to the rest methods, tuned DNNs were found to statistically outperform, with p value <0.01 based on Wilcoxon statistical test. DNN achieved on average MCC units of 0.149 higher than NB, 0.092 than kNN, 0.052 than SVM with linear kernel, 0.021 than RF and finally 0.009 higher than SVM with radial basis function kernel. When exploring robustness to noise, non-linear methods were found to perform well when dealing with low levels of noise, lower than or equal to 20%, however when dealing with higher levels of noise, higher than 30%, the Naïve Bayes method was found to perform well and even outperform at the highest level of

  7. A Network Formation Model Based on Subgraphs

    CERN Document Server

    Chandrasekhar, Arun

    2016-01-01

    We develop a new class of random-graph models for the statistical estimation of network formation that allow for substantial correlation in links. Various subgraphs (e.g., links, triangles, cliques, stars) are generated and their union results in a network. We provide estimation techniques for recovering the rates at which the underlying subgraphs were formed. We illustrate the models via a series of applications including testing for incentives to form cross-caste relationships in rural India, testing to see whether network structure is used to enforce risk-sharing, testing as to whether networks change in response to a community's exposure to microcredit, and show that these models significantly outperform stochastic block models in matching observed network characteristics. We also establish asymptotic properties of the models and various estimators, which requires proving a new Central Limit Theorem for correlated random variables.

  8. A computational model of hemodynamic parameters in cortical capillary networks.

    Science.gov (United States)

    Safaeian, Navid; Sellier, Mathieu; David, Tim

    2011-02-21

    The analysis of hemodynamic parameters and functional reactivity of cerebral capillaries is still controversial. To assess the hemodynamic parameters in the cortical capillary network, a generic model was created using 2D voronoi tessellation in which each edge represents a capillary segment. This method is capable of creating an appropriate generic model of cerebral capillary network relating to each part of the brain cortex because the geometric model is able to vary the capillary density. The modeling presented here is based on morphometric parameters extracted from physiological data of the human cortex. The pertinent hemodynamic parameters were obtained by numerical simulation based on effective blood viscosity as a function of hematocrit and microvessel diameter, phase separation and plasma skimming effects. The hemodynamic parameters of capillary networks with two different densities (consistent with the variation of the morphometric data in the human cortical capillary network) were analyzed. The results show pertinent hemodynamic parameters for each model. The heterogeneity (coefficient variation) and the mean value of hematocrits, flow rates and velocities of the both network models were specified. The distributions of blood flow throughout the both models seem to confirm the hypothesis in which all capillaries in a cortical network are recruited at rest (normal condition). The results also demonstrate a discrepancy of the network resistance between two models, which are derived from the difference in the number density of capillary segments between the models. Copyright © 2010 Elsevier Ltd. All rights reserved.

  9. Method and tool for network vulnerability analysis

    Science.gov (United States)

    Swiler, Laura Painton [Albuquerque, NM; Phillips, Cynthia A [Albuquerque, NM

    2006-03-14

    A computer system analysis tool and method that will allow for qualitative and quantitative assessment of security attributes and vulnerabilities in systems including computer networks. The invention is based on generation of attack graphs wherein each node represents a possible attack state and each edge represents a change in state caused by a single action taken by an attacker or unwitting assistant. Edges are weighted using metrics such as attacker effort, likelihood of attack success, or time to succeed. Generation of an attack graph is accomplished by matching information about attack requirements (specified in "attack templates") to information about computer system configuration (contained in a configuration file that can be updated to reflect system changes occurring during the course of an attack) and assumed attacker capabilities (reflected in "attacker profiles"). High risk attack paths, which correspond to those considered suited to application of attack countermeasures given limited resources for applying countermeasures, are identified by finding "epsilon optimal paths."

  10. Gossip spread in social network Models

    Science.gov (United States)

    Johansson, Tobias

    2017-04-01

    Gossip almost inevitably arises in real social networks. In this article we investigate the relationship between the number of friends of a person and limits on how far gossip about that person can spread in the network. How far gossip travels in a network depends on two sets of factors: (a) factors determining gossip transmission from one person to the next and (b) factors determining network topology. For a simple model where gossip is spread among people who know the victim it is known that a standard scale-free network model produces a non-monotonic relationship between number of friends and expected relative spread of gossip, a pattern that is also observed in real networks (Lind et al., 2007). Here, we study gossip spread in two social network models (Toivonen et al., 2006; Vázquez, 2003) by exploring the parameter space of both models and fitting them to a real Facebook data set. Both models can produce the non-monotonic relationship of real networks more accurately than a standard scale-free model while also exhibiting more realistic variability in gossip spread. Of the two models, the one given in Vázquez (2003) best captures both the expected values and variability of gossip spread.

  11. Synergistic effects in threshold models on networks

    Science.gov (United States)

    Juul, Jonas S.; Porter, Mason A.

    2018-01-01

    Network structure can have a significant impact on the propagation of diseases, memes, and information on social networks. Different types of spreading processes (and other dynamical processes) are affected by network architecture in different ways, and it is important to develop tractable models of spreading processes on networks to explore such issues. In this paper, we incorporate the idea of synergy into a two-state ("active" or "passive") threshold model of social influence on networks. Our model's update rule is deterministic, and the influence of each meme-carrying (i.e., active) neighbor can—depending on a parameter—either be enhanced or inhibited by an amount that depends on the number of active neighbors of a node. Such a synergistic system models social behavior in which the willingness to adopt either accelerates or saturates in a way that depends on the number of neighbors who have adopted that behavior. We illustrate that our model's synergy parameter has a crucial effect on system dynamics, as it determines whether degree-k nodes are possible or impossible to activate. We simulate synergistic meme spreading on both random-graph models and networks constructed from empirical data. Using a heterogeneous mean-field approximation, which we derive under the assumption that a network is locally tree-like, we are able to determine which synergy-parameter values allow degree-k nodes to be activated for many networks and for a broad family of synergistic models.

  12. Optimized null model for protein structure networks.

    Science.gov (United States)

    Milenković, Tijana; Filippis, Ioannis; Lappe, Michael; Przulj, Natasa

    2009-06-26

    Much attention has recently been given to the statistical significance of topological features observed in biological networks. Here, we consider residue interaction graphs (RIGs) as network representations of protein structures with residues as nodes and inter-residue interactions as edges. Degree-preserving randomized models have been widely used for this purpose in biomolecular networks. However, such a single summary statistic of a network may not be detailed enough to capture the complex topological characteristics of protein structures and their network counterparts. Here, we investigate a variety of topological properties of RIGs to find a well fitting network null model for them. The RIGs are derived from a structurally diverse protein data set at various distance cut-offs and for different groups of interacting atoms. We compare the network structure of RIGs to several random graph models. We show that 3-dimensional geometric random graphs, that model spatial relationships between objects, provide the best fit to RIGs. We investigate the relationship between the strength of the fit and various protein structural features. We show that the fit depends on protein size, structural class, and thermostability, but not on quaternary structure. We apply our model to the identification of significantly over-represented structural building blocks, i.e., network motifs, in protein structure networks. As expected, choosing geometric graphs as a null model results in the most specific identification of motifs. Our geometric random graph model may facilitate further graph-based studies of protein conformation space and have important implications for protein structure comparison and prediction. The choice of a well-fitting null model is crucial for finding structural motifs that play an important role in protein folding, stability and function. To our knowledge, this is the first study that addresses the challenge of finding an optimized null model for RIGs, by

  13. Optimized null model for protein structure networks.

    Directory of Open Access Journals (Sweden)

    Tijana Milenković

    Full Text Available Much attention has recently been given to the statistical significance of topological features observed in biological networks. Here, we consider residue interaction graphs (RIGs as network representations of protein structures with residues as nodes and inter-residue interactions as edges. Degree-preserving randomized models have been widely used for this purpose in biomolecular networks. However, such a single summary statistic of a network may not be detailed enough to capture the complex topological characteristics of protein structures and their network counterparts. Here, we investigate a variety of topological properties of RIGs to find a well fitting network null model for them. The RIGs are derived from a structurally diverse protein data set at various distance cut-offs and for different groups of interacting atoms. We compare the network structure of RIGs to several random graph models. We show that 3-dimensional geometric random graphs, that model spatial relationships between objects, provide the best fit to RIGs. We investigate the relationship between the strength of the fit and various protein structural features. We show that the fit depends on protein size, structural class, and thermostability, but not on quaternary structure. We apply our model to the identification of significantly over-represented structural building blocks, i.e., network motifs, in protein structure networks. As expected, choosing geometric graphs as a null model results in the most specific identification of motifs. Our geometric random graph model may facilitate further graph-based studies of protein conformation space and have important implications for protein structure comparison and prediction. The choice of a well-fitting null model is crucial for finding structural motifs that play an important role in protein folding, stability and function. To our knowledge, this is the first study that addresses the challenge of finding an optimized null model

  14. Determining Application Runtimes Using Queueing Network Modeling

    Energy Technology Data Exchange (ETDEWEB)

    Elliott, Michael L. [Univ. of San Francisco, CA (United States)

    2006-12-14

    Determination of application times-to-solution for large-scale clustered computers continues to be a difficult problem in high-end computing, which will only become more challenging as multi-core consumer machines become more prevalent in the market. Both researchers and consumers of these multi-core systems desire reasonable estimates of how long their programs will take to run (time-to-solution, or TTS), and how many resources will be consumed in the execution. Currently there are few methods of determining these values, and those that do exist are either overly simplistic in their assumptions or require great amounts of effort to parameterize and understand. One previously untried method is queuing network modeling (QNM), which is easy to parameterize and solve, and produces results that typically fall within 10 to 30% of the actual TTS for our test cases. Using characteristics of the computer network (bandwidth, latency) and communication patterns (number of messages, message length, time spent in communication), the QNM model of the NAS-PB CG application was applied to MCR and ALC, supercomputers at LLNL, and the Keck Cluster at USF, with average errors of 2.41%, 3.61%, and -10.73%, respectively, compared to the actual TTS observed. While additional work is necessary to improve the predictive capabilities of QNM, current results show that QNM has a great deal of promise for determining application TTS for multi-processor computer systems.

  15. Control and estimation methods over communication networks

    CERN Document Server

    Mahmoud, Magdi S

    2014-01-01

    This book provides a rigorous framework in which to study problems in the analysis, stability and design of networked control systems. Four dominant sources of difficulty are considered: packet dropouts, communication bandwidth constraints, parametric uncertainty, and time delays. Past methods and results are reviewed from a contemporary perspective, present trends are examined, and future possibilities proposed. Emphasis is placed on robust and reliable design methods. New control strategies for improving the efficiency of sensor data processing and reducing associated time delay are presented. The coverage provided features: ·        an overall assessment of recent and current fault-tolerant control algorithms; ·        treatment of several issues arising at the junction of control and communications; ·        key concepts followed by their proofs and efficient computational methods for their implementation; and ·        simulation examples (including TrueTime simulations) to...

  16. Towards Reproducible Descriptions of Neuronal Network Models

    Science.gov (United States)

    Nordlie, Eilen; Gewaltig, Marc-Oliver; Plesser, Hans Ekkehard

    2009-01-01

    Progress in science depends on the effective exchange of ideas among scientists. New ideas can be assessed and criticized in a meaningful manner only if they are formulated precisely. This applies to simulation studies as well as to experiments and theories. But after more than 50 years of neuronal network simulations, we still lack a clear and common understanding of the role of computational models in neuroscience as well as established practices for describing network models in publications. This hinders the critical evaluation of network models as well as their re-use. We analyze here 14 research papers proposing neuronal network models of different complexity and find widely varying approaches to model descriptions, with regard to both the means of description and the ordering and placement of material. We further observe great variation in the graphical representation of networks and the notation used in equations. Based on our observations, we propose a good model description practice, composed of guidelines for the organization of publications, a checklist for model descriptions, templates for tables presenting model structure, and guidelines for diagrams of networks. The main purpose of this good practice is to trigger a debate about the communication of neuronal network models in a manner comprehensible to humans, as opposed to machine-readable model description languages. We believe that the good model description practice proposed here, together with a number of other recent initiatives on data-, model-, and software-sharing, may lead to a deeper and more fruitful exchange of ideas among computational neuroscientists in years to come. We further hope that work on standardized ways of describing—and thinking about—complex neuronal networks will lead the scientific community to a clearer understanding of high-level concepts in network dynamics, and will thus lead to deeper insights into the function of the brain. PMID:19662159

  17. Towards reproducible descriptions of neuronal network models.

    Directory of Open Access Journals (Sweden)

    Eilen Nordlie

    2009-08-01

    Full Text Available Progress in science depends on the effective exchange of ideas among scientists. New ideas can be assessed and criticized in a meaningful manner only if they are formulated precisely. This applies to simulation studies as well as to experiments and theories. But after more than 50 years of neuronal network simulations, we still lack a clear and common understanding of the role of computational models in neuroscience as well as established practices for describing network models in publications. This hinders the critical evaluation of network models as well as their re-use. We analyze here 14 research papers proposing neuronal network models of different complexity and find widely varying approaches to model descriptions, with regard to both the means of description and the ordering and placement of material. We further observe great variation in the graphical representation of networks and the notation used in equations. Based on our observations, we propose a good model description practice, composed of guidelines for the organization of publications, a checklist for model descriptions, templates for tables presenting model structure, and guidelines for diagrams of networks. The main purpose of this good practice is to trigger a debate about the communication of neuronal network models in a manner comprehensible to humans, as opposed to machine-readable model description languages. We believe that the good model description practice proposed here, together with a number of other recent initiatives on data-, model-, and software-sharing, may lead to a deeper and more fruitful exchange of ideas among computational neuroscientists in years to come. We further hope that work on standardized ways of describing--and thinking about--complex neuronal networks will lead the scientific community to a clearer understanding of high-level concepts in network dynamics, and will thus lead to deeper insights into the function of the brain.

  18. A survey of spectrum prediction methods in cognitive radio networks

    Science.gov (United States)

    Wu, Jianwei; Li, Yanling

    2017-04-01

    Spectrum prediction technology is an effective way to solve the problems of processing latency, spectrum access, spectrum collision and energy consumption in cognitive radio networks. Spectral prediction technology is divided into three categories according to its nature, namely, spectral prediction method based on regression analysis, spectrum prediction method based on Markov model and spectrum prediction method based on machine learning. By analyzing and comparing the three kinds of prediction models, the author hopes to provide some reference for the later researchers. In this paper, the development situation, practical application and existent problems of three kinds of forecasting models are analyzed and summarized. On this basis, this paper discusses the development trend of the next step.

  19. Mathematics of epidemics on networks from exact to approximate models

    CERN Document Server

    Kiss, István Z; Simon, Péter L

    2017-01-01

    This textbook provides an exciting new addition to the area of network science featuring a stronger and more methodical link of models to their mathematical origin and explains how these relate to each other with special focus on epidemic spread on networks. The content of the book is at the interface of graph theory, stochastic processes and dynamical systems. The authors set out to make a significant contribution to closing the gap between model development and the supporting mathematics. This is done by: Summarising and presenting the state-of-the-art in modeling epidemics on networks with results and readily usable models signposted throughout the book; Presenting different mathematical approaches to formulate exact and solvable models; Identifying the concrete links between approximate models and their rigorous mathematical representation; Presenting a model hierarchy and clearly highlighting the links between model assumptions and model complexity; Providing a reference source for advanced undergraduate...

  20. Characterization and Modeling of Network Traffic

    DEFF Research Database (Denmark)

    Shawky, Ahmed; Bergheim, Hans; Ragnarsson, Olafur

    2011-01-01

    This paper attempts to characterize and model backbone network traffic, using a small number of statistics. In order to reduce cost and processing power associated with traffic analysis. The parameters affecting the behaviour of network traffic are investigated and the choice is that inter......-arrival time, IP addresses, port numbers and transport protocol are the only necessary parameters to model network traffic behaviour. In order to recreate this behaviour, a complex model is needed which is able to recreate traffic behaviour based on a set of statistics calculated from the parameters values....... The model investigates the traffic generation mechanisms, and grouping traffic into flows and applications....

  1. Modeling, Optimization & Control of Hydraulic Networks

    DEFF Research Database (Denmark)

    Tahavori, Maryamsadat

    2014-01-01

    in water network is pressure management. By reducing the pressure in the water network, the leakage can be reduced significantly. Also it reduces the amount of energy consumption in water networks. The primary purpose of this work is to develop control algorithms for pressure control in water supply....... The nonlinear network model is derived based on the circuit theory. A suitable projection is used to reduce the state vector and to express the model in standard state-space form. Then, the controllability of nonlinear nonaffine hydraulic networks is studied. The Lie algebra-based controllability matrix is used...... to solve nonlinear optimal control problems. In the water supply system model, the hydraulic resistance of the valve is estimated by real data and it is considered to be a disturbance. The disturbance in our system is updated every 24 hours based on the amount of water usage by consumers every day. Model...

  2. An improved method for network congestion control

    Science.gov (United States)

    Qiao, Xiaolin

    2013-03-01

    The rapid progress of the wireless network technology has great convenience on the people's life and work. However, because of its openness, the mobility of the terminal and the changing topology, the wireless network is more susceptible to security attacks. Authentication and key agreement is the base of the network security. The authentication and key agreement mechanism can prevent the unauthorized user from accessing the network, resist malicious network to deceive the lawful user, encrypt the session data by using the exchange key and provide the identification of the data origination. Based on characteristics of the wireless network, this paper proposed a key agreement protocol for wireless network. The authentication of protocol is based on Elliptic Curve Cryptosystems and Diffie-Hellman.

  3. A network model of the interbank market

    Science.gov (United States)

    Li, Shouwei; He, Jianmin; Zhuang, Yaming

    2010-12-01

    This work introduces a network model of an interbank market based on interbank credit lending relationships. It generates some network features identified through empirical analysis. The critical issue to construct an interbank network is to decide the edges among banks, which is realized in this paper based on the interbank’s degree of trust. Through simulation analysis of the interbank network model, some typical structural features are identified in our interbank network, which are also proved to exist in real interbank networks. They are namely, a low clustering coefficient and a relatively short average path length, community structures, and a two-power-law distribution of out-degree and in-degree.

  4. Extending a configuration model to find communities in complex networks

    Science.gov (United States)

    Jin, Di; He, Dongxiao; Hu, Qinghua; Baquero, Carlos; Yang, Bo

    2013-09-01

    Discovery of communities in complex networks is a fundamental data analysis task in various domains. Generative models are a promising class of techniques for identifying modular properties from networks, which has been actively discussed recently. However, most of them cannot preserve the degree sequence of networks, which will distort the community detection results. Rather than using a blockmodel as most current works do, here we generalize a configuration model, namely, a null model of modularity, to solve this problem. Towards decomposing and combining sub-graphs according to the soft community memberships, our model incorporates the ability to describe community structures, something the original model does not have. Also, it has the property, as with the original model, that it fixes the expected degree sequence to be the same as that of the observed network. We combine both the community property and degree sequence preserving into a single unified model, which gives better community results compared with other models. Thereafter, we learn the model using a technique of nonnegative matrix factorization and determine the number of communities by applying consensus clustering. We test this approach both on synthetic benchmarks and on real-world networks, and compare it with two similar methods. The experimental results demonstrate the superior performance of our method over competing methods in detecting both disjoint and overlapping communities.

  5. Railway Track Allocation: Models and Methods

    DEFF Research Database (Denmark)

    Lusby, Richard Martin; Larsen, Jesper; Ehrgott, Matthias

    2011-01-01

    Efficiently coordinating the movement of trains on a railway network is a central part of the planning process for a railway company. This paper reviews models and methods that have been proposed in the literature to assist planners in finding train routes. Since the problem of routing trains...... on a railway network entails allocating the track capacity of the network (or part thereof) over time in a conflict-free manner, all studies that model railway track allocation in some capacity are considered relevant. We hence survey work on the train timetabling, train dispatching, train platforming......, and train routing problems, group them by railway network type, and discuss track allocation from a strategic, tactical, and operational level....

  6. Modelling of virtual production networks

    Directory of Open Access Journals (Sweden)

    2011-03-01

    Full Text Available Nowadays many companies, especially small and medium-sized enterprises (SMEs, specialize in a limited field of production. It requires forming virtual production networks of cooperating enterprises to manufacture better, faster and cheaper. Apart from that, some production orders cannot be realized, because there is not a company of sufficient production potential. In this case the virtual production networks of cooperating companies can realize these production orders. These networks have larger production capacity and many different resources. Therefore it can realize many more production orders together than each of them separately. Such organization allows for executing high quality product. The maintenance costs of production capacity and used resources are not so high. In this paper a methodology of rapid prototyping of virtual production networks is proposed. It allows to execute production orders on time considered existing logistic constraints.

  7. Modeling Epidemics Spreading on Social Contact Networks.

    Science.gov (United States)

    Zhang, Zhaoyang; Wang, Honggang; Wang, Chonggang; Fang, Hua

    2015-09-01

    Social contact networks and the way people interact with each other are the key factors that impact on epidemics spreading. However, it is challenging to model the behavior of epidemics based on social contact networks due to their high dynamics. Traditional models such as susceptible-infected-recovered (SIR) model ignore the crowding or protection effect and thus has some unrealistic assumption. In this paper, we consider the crowding or protection effect and develop a novel model called improved SIR model. Then, we use both deterministic and stochastic models to characterize the dynamics of epidemics on social contact networks. The results from both simulations and real data set conclude that the epidemics are more likely to outbreak on social contact networks with higher average degree. We also present some potential immunization strategies, such as random set immunization, dominating set immunization, and high degree set immunization to further prove the conclusion.

  8. Structural equation models from paths to networks

    CERN Document Server

    Westland, J Christopher

    2015-01-01

    This compact reference surveys the full range of available structural equation modeling (SEM) methodologies.  It reviews applications in a broad range of disciplines, particularly in the social sciences where many key concepts are not directly observable.  This is the first book to present SEM’s development in its proper historical context–essential to understanding the application, strengths and weaknesses of each particular method.  This book also surveys the emerging path and network approaches that complement and enhance SEM, and that will grow in importance in the near future.  SEM’s ability to accommodate unobservable theory constructs through latent variables is of significant importance to social scientists.  Latent variable theory and application are comprehensively explained, and methods are presented for extending their power, including guidelines for data preparation, sample size calculation, and the special treatment of Likert scale data.  Tables of software, methodologies and fit st...

  9. Northern emporia and maritime networks. Modelling past communication using archaeological network analysis

    DEFF Research Database (Denmark)

    Sindbæk, Søren Michael

    2015-01-01

    Long-distance communication has emerged as a particular focus for archaeologicalexploration using network theory, analysis, and modelling. The promise is apparentlyobvious: communication in the past doubtlessly had properties of complex, dynamicnetworks, and archaeological datasets almost certainly...... preserve patterns of thisinteraction. Formal network analysis and modelling holds the potential to identify anddemonstrate such patterns, where traditional methods often prove inadequate. Thearchaeological study of communication networks in the past, however, calls for radically different analytical......,and use patterns. This point is demonstrated with reference to a study of Viking-period communication in the North Sea region...

  10. Agent Based Modeling on Organizational Dynamics of Terrorist Network

    Directory of Open Access Journals (Sweden)

    Bo Li

    2015-01-01

    Full Text Available Modeling organizational dynamics of terrorist network is a critical issue in computational analysis of terrorism research. The first step for effective counterterrorism and strategic intervention is to investigate how the terrorists operate with the relational network and what affects the performance. In this paper, we investigate the organizational dynamics by employing a computational experimentation methodology. The hierarchical cellular network model and the organizational dynamics model are developed for modeling the hybrid relational structure and complex operational processes, respectively. To intuitively elucidate this method, the agent based modeling is used to simulate the terrorist network and test the performance in diverse scenarios. Based on the experimental results, we show how the changes of operational environments affect the development of terrorist organization in terms of its recovery and capacity to perform future tasks. The potential strategies are also discussed, which can be used to restrain the activities of terrorists.

  11. Modeling the interdependent network based on two-mode networks

    Science.gov (United States)

    An, Feng; Gao, Xiangyun; Guan, Jianhe; Huang, Shupei; Liu, Qian

    2017-10-01

    Among heterogeneous networks, there exist obviously and closely interdependent linkages. Unlike existing research primarily focus on the theoretical research of physical interdependent network model. We propose a two-layer interdependent network model based on two-mode networks to explore the interdependent features in the reality. Specifically, we construct a two-layer interdependent loan network and develop several dependent features indices. The model is verified to enable us to capture the loan dependent features of listed companies based on loan behaviors and shared shareholders. Taking Chinese debit and credit market as case study, the main conclusions are: (1) only few listed companies shoulder the main capital transmission (20% listed companies occupy almost 70% dependent degree). (2) The control of these key listed companies will be more effective of avoiding the spreading of financial risks. (3) Identifying the companies with high betweenness centrality and controlling them could be helpful to monitor the financial risk spreading. (4) The capital transmission channel among Chinese financial listed companies and Chinese non-financial listed companies are relatively strong. However, under greater pressure of demand of capital transmission (70% edges failed), the transmission channel, which constructed by debit and credit behavior, will eventually collapse.

  12. A Gaussian graphical model approach to climate networks

    Energy Technology Data Exchange (ETDEWEB)

    Zerenner, Tanja, E-mail: tanjaz@uni-bonn.de [Meteorological Institute, University of Bonn, Auf dem Hügel 20, 53121 Bonn (Germany); Friederichs, Petra; Hense, Andreas [Meteorological Institute, University of Bonn, Auf dem Hügel 20, 53121 Bonn (Germany); Interdisciplinary Center for Complex Systems, University of Bonn, Brühler Straße 7, 53119 Bonn (Germany); Lehnertz, Klaus [Department of Epileptology, University of Bonn, Sigmund-Freud-Straße 25, 53105 Bonn (Germany); Helmholtz Institute for Radiation and Nuclear Physics, University of Bonn, Nussallee 14-16, 53115 Bonn (Germany); Interdisciplinary Center for Complex Systems, University of Bonn, Brühler Straße 7, 53119 Bonn (Germany)

    2014-06-15

    Distinguishing between direct and indirect connections is essential when interpreting network structures in terms of dynamical interactions and stability. When constructing networks from climate data the nodes are usually defined on a spatial grid. The edges are usually derived from a bivariate dependency measure, such as Pearson correlation coefficients or mutual information. Thus, the edges indistinguishably represent direct and indirect dependencies. Interpreting climate data fields as realizations of Gaussian Random Fields (GRFs), we have constructed networks according to the Gaussian Graphical Model (GGM) approach. In contrast to the widely used method, the edges of GGM networks are based on partial correlations denoting direct dependencies. Furthermore, GRFs can be represented not only on points in space, but also by expansion coefficients of orthogonal basis functions, such as spherical harmonics. This leads to a modified definition of network nodes and edges in spectral space, which is motivated from an atmospheric dynamics perspective. We construct and analyze networks from climate data in grid point space as well as in spectral space, and derive the edges from both Pearson and partial correlations. Network characteristics, such as mean degree, average shortest path length, and clustering coefficient, reveal that the networks posses an ordered and strongly locally interconnected structure rather than small-world properties. Despite this, the network structures differ strongly depending on the construction method. Straightforward approaches to infer networks from climate data while not regarding any physical processes may contain too strong simplifications to describe the dynamics of the climate system appropriately.

  13. Comparison of QSAR models based on combinations of genetic algorithm, stepwise multiple linear regression, and artificial neural network methods to predict Kd of some derivatives of aromatic sulfonamides as carbonic anhydrase II inhibitors.

    Science.gov (United States)

    Maleki, Afshin; Daraei, Hiua; Alaei, Loghman; Faraji, Aram

    2014-01-01

    Four stepwise multiple linear regressions (SMLR) and a genetic algorithm (GA) based multiple linear regressions (MLR), together with artificial neural network (ANN) models, were applied for quantitative structure-activity relationship (QSAR) modeling of dissociation constants (Kd) of 62 arylsulfonamide (ArSA) derivatives as human carbonic anhydrase II (HCA II) inhibitors. The best subsets of molecular descriptors were selected by SMLR and GA-MLR methods. These selected variables were used to generate MLR and ANN models. The predictability power of models was examined by an external test set and cross validation. In addition, some tests were done to examine other aspects of the models. The results show that for certain purposes GA-MLR is better than SMLR and for others, ANN overcomes MLR models.

  14. Sensor Network Information Analytical Methods: Analysis of Similarities and Differences

    Directory of Open Access Journals (Sweden)

    Chen Jian

    2014-04-01

    Full Text Available In the Sensor Network information engineering literature, few references focus on the definition and design of Sensor Network information analytical methods. Among those that do are Munson, et al. and the ISO standards on functional size analysis. To avoid inconsistent vocabulary and potentially incorrect interpretation of data, Sensor Network information analytical methods must be better designed, including definitions, analysis principles, analysis rules, and base units. This paper analyzes the similarities and differences across three different views of analytical methods, and uses a process proposed for the design of Sensor Network information analytical methods to analyze two examples of such methods selected from the literature.

  15. An endogenous model of the credit network

    Science.gov (United States)

    He, Jianmin; Sui, Xin; Li, Shouwei

    2016-01-01

    In this paper, an endogenous credit network model of firm-bank agents is constructed. The model describes the endogenous formation of firm-firm, firm-bank and bank-bank credit relationships. By means of simulations, the model is capable of showing some obvious similarities with empirical evidence found by other scholars: the upper-tail of firm size distribution can be well fitted with a power-law; the bank size distribution can be lognormally distributed with a power-law tail; the bank in-degrees of the interbank credit network as well as the firm-bank credit network fall into two-power-law distributions.

  16. Tensor network models of multiboundary wormholes

    Science.gov (United States)

    Peach, Alex; Ross, Simon F.

    2017-05-01

    We study the entanglement structure of states dual to multiboundary wormhole geometries using tensor network models. Perfect and random tensor networks tiling the hyperbolic plane have been shown to provide good models of the entanglement structure in holography. We extend this by quotienting the plane by discrete isometries to obtain models of the multiboundary states. We show that there are networks where the entanglement structure is purely bipartite, extending results obtained in the large temperature limit. We analyse the entanglement structure in a range of examples.

  17. Stochastic discrete model of karstic networks

    Science.gov (United States)

    Jaquet, O.; Siegel, P.; Klubertanz, G.; Benabderrhamane, H.

    Karst aquifers are characterised by an extreme spatial heterogeneity that strongly influences their hydraulic behaviour and the transport of pollutants. These aquifers are particularly vulnerable to contamination because of their highly permeable networks of conduits. A stochastic model is proposed for the simulation of the geometry of karstic networks at a regional scale. The model integrates the relevant physical processes governing the formation of karstic networks. The discrete simulation of karstic networks is performed with a modified lattice-gas cellular automaton for a representative description of the karstic aquifer geometry. Consequently, more reliable modelling results can be obtained for the management and the protection of karst aquifers. The stochastic model was applied jointly with groundwater modelling techniques to a regional karst aquifer in France for the purpose of resolving surface pollution issues.

  18. Designing Network-based Business Model Ontology

    DEFF Research Database (Denmark)

    Hashemi Nekoo, Ali Reza; Ashourizadeh, Shayegheh; Zarei, Behrouz

    2015-01-01

    Survival on dynamic environment is not achieved without a map. Scanning and monitoring of the market show business models as a fruitful tool. But scholars believe that old-fashioned business models are dead; as they are not included the effect of internet and network in themselves. This paper...... is going to propose e-business model ontology from the network point of view and its application in real world. The suggested ontology for network-based businesses is composed of individuals` characteristics and what kind of resources they own. also, their connections and pre-conceptions of connections...... such as shared-mental model and trust. However, it mostly covers previous business model elements. To confirm the applicability of this ontology, it has been implemented in business angel network and showed how it works....

  19. Queueing Models for Mobile Ad Hoc Networks

    NARCIS (Netherlands)

    de Haan, Roland

    2009-01-01

    This thesis presents models for the performance analysis of a recent communication paradigm: \\emph{mobile ad hoc networking}. The objective of mobile ad hoc networking is to provide wireless connectivity between stations in a highly dynamic environment. These dynamics are driven by the mobility of

  20. Modelling traffic congestion using queuing networks

    Indian Academy of Sciences (India)

    Traffic Flow-Density diagrams are obtained using simple Jackson queuing network analysis. Such simple analytical models can be used to capture the effect of non- homogenous traffic. Keywords. Flow-density curves; uninterrupted traffic; Jackson networks. 1. Introduction. Traffic management has become very essential in ...

  1. An intelligent scheduling method based on improved particle swarm optimization algorithm for drainage pipe network

    Science.gov (United States)

    Luo, Yaqi; Zeng, Bi

    2017-08-01

    This paper researches the drainage routing problem in drainage pipe network, and propose an intelligent scheduling method. The method relates to the design of improved particle swarm optimization algorithm, the establishment of the corresponding model from the pipe network, and the process by using the algorithm based on improved particle swarm optimization to find the optimum drainage route in the current environment.

  2. Usage of Modified Holt-Winters Method in the Anomaly Detection of Network Traffic: Case Studies

    Directory of Open Access Journals (Sweden)

    Maciej Szmit

    2012-01-01

    Full Text Available The traditional Holt-Winters method is used, among others, in behavioural analysis of network traffic for development of adaptive models for various types of traffic in sample computer networks. This paper is devoted to the application of extended versions of these models for development of predicted templates and intruder detection.

  3. Usage of Modified Holt-Winters Method in the Anomaly Detection of Network Traffic: Case Studies

    OpenAIRE

    Maciej Szmit; Anna Szmit

    2012-01-01

    The traditional Holt-Winters method is used, among others, in behavioural analysis of network traffic for development of adaptive models for various types of traffic in sample computer networks. This paper is devoted to the application of extended versions of these models for development of predicted templates and intruder detection.

  4. Algorithmic and analytical methods in network biology

    OpenAIRE

    Koyutürk, Mehmet

    2010-01-01

    During genomic revolution, algorithmic and analytical methods for organizing, integrating, analyzing, and querying biological sequence data proved invaluable. Today, increasing availability of high-throughput data pertaining functional states of biomolecules, as well as their interactions, enables genome-scale studies of the cell from a systems perspective. The past decade witnessed significant efforts on the development of computational infrastructure for large-scale modeling and analysis of...

  5. Oxygen Distributions-Evaluation of Computational Methods, Using a Stochastic Model for Large Tumour Vasculature, to Elucidate the Importance of Considering a Complete Vascular Network.

    Directory of Open Access Journals (Sweden)

    Jakob H Lagerlöf

    Full Text Available To develop a general model that utilises a stochastic method to generate a vessel tree based on experimental data, and an associated irregular, macroscopic tumour. These will be used to evaluate two different methods for computing oxygen distribution.A vessel tree structure, and an associated tumour of 127 cm3, were generated, using a stochastic method and Bresenham's line algorithm to develop trees on two different scales and fusing them together. The vessel dimensions were adjusted through convolution and thresholding and each vessel voxel was assigned an oxygen value. Diffusion and consumption were modelled using a Green's function approach together with Michaelis-Menten kinetics. The computations were performed using a combined tree method (CTM and an individual tree method (ITM. Five tumour sub-sections were compared, to evaluate the methods.The oxygen distributions of the same tissue samples, using different methods of computation, were considerably less similar (root mean square deviation, RMSD≈0.02 than the distributions of different samples using CTM (0.001< RMSD<0.01. The deviations of ITM from CTM increase with lower oxygen values, resulting in ITM severely underestimating the level of hypoxia in the tumour. Kolmogorov Smirnov (KS tests showed that millimetre-scale samples may not represent the whole.The stochastic model managed to capture the heterogeneous nature of hypoxic fractions and, even though the simplified computation did not considerably alter the oxygen distribution, it leads to an evident underestimation of tumour hypoxia, and thereby radioresistance. For a trustworthy computation of tumour oxygenation, the interaction between adjacent microvessel trees must not be neglected, why evaluation should be made using high resolution and the CTM, applied to the entire tumour.

  6. Mathematical model of highways network optimization

    Science.gov (United States)

    Sakhapov, R. L.; Nikolaeva, R. V.; Gatiyatullin, M. H.; Makhmutov, M. M.

    2017-12-01

    The article deals with the issue of highways network design. Studies show that the main requirement from road transport for the road network is to ensure the realization of all the transport links served by it, with the least possible cost. The goal of optimizing the network of highways is to increase the efficiency of transport. It is necessary to take into account a large number of factors that make it difficult to quantify and qualify their impact on the road network. In this paper, we propose building an optimal variant for locating the road network on the basis of a mathematical model. The article defines the criteria for optimality and objective functions that reflect the requirements for the road network. The most fully satisfying condition for optimality is the minimization of road and transport costs. We adopted this indicator as a criterion of optimality in the economic-mathematical model of a network of highways. Studies have shown that each offset point in the optimal binding road network is associated with all other corresponding points in the directions providing the least financial costs necessary to move passengers and cargo from this point to the other corresponding points. The article presents general principles for constructing an optimal network of roads.

  7. Modeling trust context in networks

    CERN Document Server

    Adali, Sibel

    2013-01-01

    We make complex decisions every day, requiring trust in many different entities for different reasons. These decisions are not made by combining many isolated trust evaluations. Many interlocking factors play a role, each dynamically impacting the others.? In this brief, 'trust context' is defined as the system level description of how the trust evaluation process unfolds.Networks today are part of almost all human activity, supporting and shaping it. Applications increasingly incorporate new interdependencies and new trust contexts. Social networks connect people and organizations throughout

  8. Model-based control of networked systems

    CERN Document Server

    Garcia, Eloy; Montestruque, Luis A

    2014-01-01

    This monograph introduces a class of networked control systems (NCS) called model-based networked control systems (MB-NCS) and presents various architectures and control strategies designed to improve the performance of NCS. The overall performance of NCS considers the appropriate use of network resources, particularly network bandwidth, in conjunction with the desired response of the system being controlled.   The book begins with a detailed description of the basic MB-NCS architecture that provides stability conditions in terms of state feedback updates . It also covers typical problems in NCS such as network delays, network scheduling, and data quantization, as well as more general control problems such as output feedback control, nonlinear systems stabilization, and tracking control.   Key features and topics include: Time-triggered and event-triggered feedback updates Stabilization of uncertain systems subject to time delays, quantization, and extended absence of feedback Optimal control analysis and ...

  9. Improved security monitoring method for network bordary

    Science.gov (United States)

    Gao, Liting; Wang, Lixia; Wang, Zhenyan; Qi, Aihua

    2013-03-01

    This paper proposes a network bordary security monitoring system based on PKI. The design uses multiple safe technologies, analysis deeply the association between network data flow and system log, it can detect the intrusion activities and position invasion source accurately in time. The experiment result shows that it can reduce the rate of false alarm or missing alarm of the security incident effectively.

  10. New Neural Network Methods for Forecasting Regional Employment

    NARCIS (Netherlands)

    Patuelli, R.; Reggiani, A; Nijkamp, P.; Blien, U.

    2006-01-01

    In this paper, a set of neural network (NN) models is developed to compute short-term forecasts of regional employment patterns in Germany. Neural networks are modern statistical tools based on learning algorithms that are able to process large amounts of data. Neural networks are enjoying

  11. Modelling, Synthesis, and Configuration of Networks-on-Chips

    DEFF Research Database (Denmark)

    Stuart, Matthias Bo

    This thesis presents three contributions in two different areas of network-on-chip and system-on-chip research: Application modelling and identifying and solving different optimization problems related to two specific network-on-chip architectures. The contribution related to application modelling...... is an analytical method for deriving the worst-case traffic pattern caused by an application and the cache-coherence protocol in a cache-coherent shared-memory system. The contributions related to network-on-chip optimization problems consist of two parts: The development and evaluation of six heuristics...... for solving the network synthesis problem in the MANGO network-on-chip, and the identification and formalization of the ReNoC configuration problem together with three heuristics for solving it....

  12. Optimization of recurrent neural networks for time series modeling

    DEFF Research Database (Denmark)

    Pedersen, Morten With

    1997-01-01

    series. The overall objective s are to improve training by application of second-order methods and to improve generalization ability by architecture optimization accomplished by pruning. The major topics covered in the thesis are: 1. The problem of training recurrent networks is analyzed from a numerical...... of solution obtained as well as computation time required. 3. A theoretical definition of the generalization error for recurrent networks is provided. This definition justifies a commonly adopted approach for estimating generalization ability. 4. The viability of pruning recurrent networks by the Optimal...... networks is proposed. The tool allows for assessment of the length of the effe ctive memory of previous inputs built up in the recurrent network during application. Time series modeling is also treated from a more general point of view, namely modeling of the joint probability distribution function...

  13. An effective method for network module extraction from microarray data

    Directory of Open Access Journals (Sweden)

    Mahanta Priyakshi

    2012-08-01

    Full Text Available Abstract Background The development of high-throughput Microarray technologies has provided various opportunities to systematically characterize diverse types of computational biological networks. Co-expression network have become popular in the analysis of microarray data, such as for detecting functional gene modules. Results This paper presents a method to build a co-expression network (CEN and to detect network modules from the built network. We use an effective gene expression similarity measure called NMRS (Normalized mean residue similarity to construct the CEN. We have tested our method on five publicly available benchmark microarray datasets. The network modules extracted by our algorithm have been biologically validated in terms of Q value and p value. Conclusions Our results show that the technique is capable of detecting biologically significant network modules from the co-expression network. Biologist can use this technique to find groups of genes with similar functionality based on their expression information.

  14. Network Theory and Effects of Transcranial Brain Stimulation Methods on the Brain Networks

    Directory of Open Access Journals (Sweden)

    Sema Demirci

    2014-12-01

    Full Text Available In recent years, there has been a shift from classic localizational approaches to new approaches where the brain is considered as a complex system. Therefore, there has been an increase in the number of studies involving collaborations with other areas of neurology in order to develop methods to understand the complex systems. One of the new approaches is graphic theory that has principles based on mathematics and physics. According to this theory, the functional-anatomical connections of the brain are defined as a network. Moreover, transcranial brain stimulation techniques are amongst the recent research and treatment methods that have been commonly used in recent years. Changes that occur as a result of applying brain stimulation techniques on physiological and pathological networks help better understand the normal and abnormal functions of the brain, especially when combined with techniques such as neuroimaging and electroencephalography. This review aims to provide an overview of the applications of graphic theory and related parameters, studies conducted on brain functions in neurology and neuroscience, and applications of brain stimulation systems in the changing treatment of brain network models and treatment of pathological networks defined on the basis of this theory.

  15. Hybrid modeling and empirical analysis of automobile supply chain network

    Science.gov (United States)

    Sun, Jun-yan; Tang, Jian-ming; Fu, Wei-ping; Wu, Bing-ying

    2017-05-01

    Based on the connection mechanism of nodes which automatically select upstream and downstream agents, a simulation model for dynamic evolutionary process of consumer-driven automobile supply chain is established by integrating ABM and discrete modeling in the GIS-based map. Firstly, the rationality is proved by analyzing the consistency of sales and changes in various agent parameters between the simulation model and a real automobile supply chain. Second, through complex network theory, hierarchical structures of the model and relationships of networks at different levels are analyzed to calculate various characteristic parameters such as mean distance, mean clustering coefficients, and degree distributions. By doing so, it verifies that the model is a typical scale-free network and small-world network. Finally, the motion law of this model is analyzed from the perspective of complex self-adaptive systems. The chaotic state of the simulation system is verified, which suggests that this system has typical nonlinear characteristics. This model not only macroscopically illustrates the dynamic evolution of complex networks of automobile supply chain but also microcosmically reflects the business process of each agent. Moreover, the model construction and simulation of the system by means of combining CAS theory and complex networks supplies a novel method for supply chain analysis, as well as theory bases and experience for supply chain analysis of auto companies.

  16. Modeling Network Traffic in Wavelet Domain

    Directory of Open Access Journals (Sweden)

    Sheng Ma

    2004-12-01

    Full Text Available This work discovers that although network traffic has the complicated short- and long-range temporal dependence, the corresponding wavelet coefficients are no longer long-range dependent. Therefore, a "short-range" dependent process can be used to model network traffic in the wavelet domain. Both independent and Markov models are investigated. Theoretical analysis shows that the independent wavelet model is sufficiently accurate in terms of the buffer overflow probability for Fractional Gaussian Noise traffic. Any model, which captures additional correlations in the wavelet domain, only improves the performance marginally. The independent wavelet model is then used as a unified approach to model network traffic including VBR MPEG video and Ethernet data. The computational complexity is O(N for developing such wavelet models and generating synthesized traffic of length N, which is among the lowest attained.

  17. Gene Regulation Networks for Modeling Drosophila Development

    Science.gov (United States)

    Mjolsness, E.

    1999-01-01

    This chapter will very briefly introduce and review some computational experiments in using trainable gene regulation network models to simulate and understand selected episodes in the development of the fruit fly, Drosophila Melanogaster.

  18. Graphical Model Theory for Wireless Sensor Networks

    Energy Technology Data Exchange (ETDEWEB)

    Davis, William B.

    2002-12-08

    Information processing in sensor networks, with many small processors, demands a theory of computation that allows the minimization of processing effort, and the distribution of this effort throughout the network. Graphical model theory provides a probabilistic theory of computation that explicitly addresses complexity and decentralization for optimizing network computation. The junction tree algorithm, for decentralized inference on graphical probability models, can be instantiated in a variety of applications useful for wireless sensor networks, including: sensor validation and fusion; data compression and channel coding; expert systems, with decentralized data structures, and efficient local queries; pattern classification, and machine learning. Graphical models for these applications are sketched, and a model of dynamic sensor validation and fusion is presented in more depth, to illustrate the junction tree algorithm.

  19. Mitigating risk during strategic supply network modeling

    OpenAIRE

    Müssigmann, Nikolaus

    2006-01-01

    Mitigating risk during strategic supply network modeling. - In: Managing risks in supply chains / ed. by Wolfgang Kersten ... - Berlin : Schmidt, 2006. - S. 213-226. - (Operations and technology management ; 1)

  20. A Method for Upper Bounding on Network Access Speed

    DEFF Research Database (Denmark)

    Knudsen, Thomas Phillip; Patel, A.; Pedersen, Jens Myrup

    2004-01-01

    This paper presents a method for calculating an upper bound on network access speed growth and gives guidelines for further research experiments and simulations. The method is aimed at providing a basis for simulation of long term network development and resource management.......This paper presents a method for calculating an upper bound on network access speed growth and gives guidelines for further research experiments and simulations. The method is aimed at providing a basis for simulation of long term network development and resource management....

  1. Road maintenance planning using network flow modelling

    OpenAIRE

    Yang, Chao; Remenyte-Prescott, Rasa; Andrews, John

    2015-01-01

    This paper presents a road maintenance planning model that can be used to balance out maintenance cost and road user cost, since performing road maintenance at night can be convenient for road users but costly for highway agency. Based on the platform of the network traffic flow modelling, the traffic through the worksite and its adjacent road links is evaluated. Thus, maintenance arrangements at a worksite can be optimized considering the overall network performance. In addition, genetic alg...

  2. Modeling the Merger of the Classified Networks of the DDN (Defense Data Network): BLACKER

    Science.gov (United States)

    1988-11-01

    Cain (1983) presented ’The DoD Internet Architecture Model" approach where a common internal host-to-host packet or datagram service is proposed for...The baseline model was a simulation similar to the model of *The DoD Internet Architecture Model" presented by Cerf and Cain. (1983) Parameters for...in each network can be redirected, what would be the optimal method for allocation? Third, what are the impacts of interdomain messages? What happens

  3. Social Insects: A Model System for Network Dynamics

    Science.gov (United States)

    Charbonneau, Daniel; Blonder, Benjamin; Dornhaus, Anna

    Social insect colonies (ants, bees, wasps, and termites) show sophisticated collective problem-solving in the face of variable constraints. Individuals exchange information and materials such as food. The resulting network structure and dynamics can inform us about the mechanisms by which the insects achieve particular collective behaviors and these can be transposed to man-made and social networks. We discuss how network analysis can answer important questions about social insects, such as how effective task allocation or information flow is realized. We put forward the idea that network analysis methods are under-utilized in social insect research, and that they can provide novel ways to view the complexity of collective behavior, particularly if network dynamics are taken into account. To illustrate this, we present an example of network tasks performed by ant workers, linked by instances of workers switching from one task to another. We show how temporal network analysis can propose and test new hypotheses on mechanisms of task allocation, and how adding temporal elements to static networks can drastically change results. We discuss the benefits of using social insects as models for complex systems in general. There are multiple opportunities emergent technologies and analysis methods in facilitating research on social insect network. The potential for interdisciplinary work could significantly advance diverse fields such as behavioral ecology, computer sciences, and engineering.

  4. Railway Track Allocation: Models and Methods

    DEFF Research Database (Denmark)

    Lusby, Richard Martin; Larsen, Jesper; Ehrgott, Matthias

    Eciently coordinating the movement of trains on a railway network is a central part of the planning process for a railway company. This paper reviews models and methods that have been proposed in the literature to assist planners in nding train routes. Since the problem of routing trains on a rai......Eciently coordinating the movement of trains on a railway network is a central part of the planning process for a railway company. This paper reviews models and methods that have been proposed in the literature to assist planners in nding train routes. Since the problem of routing trains...... on a railway network entails allocating the track capacity of the network (or part thereof) over time in a con ict-free manner, all studies that model railway track allocation in some capacity are considered relevant. We hence survey work on the train timetabling, train dispatching, train platforming......, and train routing problems, group them by railway network type, and discuss track allocation from a strategic, tactical, and operational level....

  5. Generalized memory associativity in a network model for the neuroses

    Science.gov (United States)

    Wedemann, Roseli S.; Donangelo, Raul; de Carvalho, Luís A. V.

    2009-03-01

    We review concepts introduced in earlier work, where a neural network mechanism describes some mental processes in neurotic pathology and psychoanalytic working-through, as associative memory functioning, according to the findings of Freud. We developed a complex network model, where modules corresponding to sensorial and symbolic memories interact, representing unconscious and conscious mental processes. The model illustrates Freud's idea that consciousness is related to symbolic and linguistic memory activity in the brain. We have introduced a generalization of the Boltzmann machine to model memory associativity. Model behavior is illustrated with simulations and some of its properties are analyzed with methods from statistical mechanics.

  6. Comparative study of discretization methods of microarray data for inferring transcriptional regulatory networks

    Directory of Open Access Journals (Sweden)

    Ji Wei

    2010-10-01

    Full Text Available Abstract Background Microarray data discretization is a basic preprocess for many algorithms of gene regulatory network inference. Some common discretization methods in informatics are used to discretize microarray data. Selection of the discretization method is often arbitrary and no systematic comparison of different discretization has been conducted, in the context of gene regulatory network inference from time series gene expression data. Results In this study, we propose a new discretization method "bikmeans", and compare its performance with four other widely-used discretization methods using different datasets, modeling algorithms and number of intervals. Sensitivities, specificities and total accuracies were calculated and statistical analysis was carried out. Bikmeans method always gave high total accuracies. Conclusions Our results indicate that proper discretization methods can consistently improve gene regulatory network inference independent of network modeling algorithms and datasets. Our new method, bikmeans, resulted in significant better total accuracies than other methods.

  7. Electrical network method for the thermal or structural characterization of a conducting material sample or structure

    Science.gov (United States)

    Ortiz, Marco G.

    1993-01-01

    A method for modeling a conducting material sample or structure system, as an electrical network of resistances in which each resistance of the network is representative of a specific physical region of the system. The method encompasses measuring a resistance between two external leads and using this measurement in a series of equations describing the network to solve for the network resistances for a specified region and temperature. A calibration system is then developed using the calculated resistances at specified temperatures. This allows for the translation of the calculated resistances to a region temperature. The method can also be used to detect and quantify structural defects in the system.

  8. Computer-Supported Modelling of Multi modal Transportation Networks Rationalization

    Directory of Open Access Journals (Sweden)

    Ratko Zelenika

    2007-09-01

    Full Text Available This paper deals with issues of shaping and functioning ofcomputer programs in the modelling and solving of multimoda Itransportation network problems. A methodology of an integrateduse of a programming language for mathematical modellingis defined, as well as spreadsheets for the solving of complexmultimodal transportation network problems. The papercontains a comparison of the partial and integral methods ofsolving multimodal transportation networks. The basic hypothesisset forth in this paper is that the integral method results inbetter multimodal transportation network rationalization effects,whereas a multimodal transportation network modelbased on the integral method, once built, can be used as the basisfor all kinds of transportation problems within multimodaltransport. As opposed to linear transport problems, multimodaltransport network can assume very complex shapes. This papercontains a comparison of the partial and integral approach totransp01tation network solving. In the partial approach, astraightforward model of a transp01tation network, which canbe solved through the use of the Solver computer tool within theExcel spreadsheet inteiface, is quite sufficient. In the solving ofa multimodal transportation problem through the integralmethod, it is necessmy to apply sophisticated mathematicalmodelling programming languages which supp01t the use ofcomplex matrix functions and the processing of a vast amountof variables and limitations. The LINGO programming languageis more abstract than the Excel spreadsheet, and it requiresa certain programming knowledge. The definition andpresentation of a problem logic within Excel, in a manner whichis acceptable to computer software, is an ideal basis for modellingin the LINGO programming language, as well as a fasterand more effective implementation of the mathematical model.This paper provides proof for the fact that it is more rational tosolve the problem of multimodal transportation networks by

  9. Utilizing evolutionary information and gene expression data for estimating gene networks with bayesian network models.

    Science.gov (United States)

    Tamada, Yoshinori; Bannai, Hideo; Imoto, Seiya; Katayama, Toshiaki; Kanehisa, Minoru; Miyano, Satoru

    2005-12-01

    Since microarray gene expression data do not contain sufficient information for estimating accurate gene networks, other biological information has been considered to improve the estimated networks. Recent studies have revealed that highly conserved proteins that exhibit similar expression patterns in different organisms, have almost the same function in each organism. Such conserved proteins are also known to play similar roles in terms of the regulation of genes. Therefore, this evolutionary information can be used to refine regulatory relationships among genes, which are estimated from gene expression data. We propose a statistical method for estimating gene networks from gene expression data by utilizing evolutionarily conserved relationships between genes. Our method simultaneously estimates two gene networks of two distinct organisms, with a Bayesian network model utilizing the evolutionary information so that gene expression data of one organism helps to estimate the gene network of the other. We show the effectiveness of the method through the analysis on Saccharomyces cerevisiae and Homo sapiens cell cycle gene expression data. Our method was successful in estimating gene networks that capture many known relationships as well as several unknown relationships which are likely to be novel. Supplementary information is available at http://bonsai.ims.u-tokyo.ac.jp/~tamada/bayesnet/.

  10. Posterior Predictive Model Checking in Bayesian Networks

    Science.gov (United States)

    Crawford, Aaron

    2014-01-01

    This simulation study compared the utility of various discrepancy measures within a posterior predictive model checking (PPMC) framework for detecting different types of data-model misfit in multidimensional Bayesian network (BN) models. The investigated conditions were motivated by an applied research program utilizing an operational complex…

  11. Steady state analysis of Boolean molecular network models via model reduction and computational algebra.

    Science.gov (United States)

    Veliz-Cuba, Alan; Aguilar, Boris; Hinkelmann, Franziska; Laubenbacher, Reinhard

    2014-06-26

    A key problem in the analysis of mathematical models of molecular networks is the determination of their steady states. The present paper addresses this problem for Boolean network models, an increasingly popular modeling paradigm for networks lacking detailed kinetic information. For small models, the problem can be solved by exhaustive enumeration of all state transitions. But for larger models this is not feasible, since the size of the phase space grows exponentially with the dimension of the network. The dimension of published models is growing to over 100, so that efficient methods for steady state determination are essential. Several methods have been proposed for large networks, some of them heuristic. While these methods represent a substantial improvement in scalability over exhaustive enumeration, the problem for large networks is still unsolved in general. This paper presents an algorithm that consists of two main parts. The first is a graph theoretic reduction of the wiring diagram of the network, while preserving all information about steady states. The second part formulates the determination of all steady states of a Boolean network as a problem of finding all solutions to a system of polynomial equations over the finite number system with two elements. This problem can be solved with existing computer algebra software. This algorithm compares favorably with several existing algorithms for steady state determination. One advantage is that it is not heuristic or reliant on sampling, but rather determines algorithmically and exactly all steady states of a Boolean network. The code for the algorithm, as well as the test suite of benchmark networks, is available upon request from the corresponding author. The algorithm presented in this paper reliably determines all steady states of sparse Boolean networks with up to 1000 nodes. The algorithm is effective at analyzing virtually all published models even those of moderate connectivity. The problem for

  12. Experimental method to predict avalanches based on neural networks

    Directory of Open Access Journals (Sweden)

    V. V. Zhdanov

    2016-01-01

    Full Text Available The article presents results of experimental use of currently available statistical methods to classify the avalanche‑dangerous precipitations and snowfalls in the Kishi Almaty river basin. The avalanche service of Kazakhstan uses graphical methods for prediction of avalanches developed by I.V. Kondrashov and E.I. Kolesnikov. The main objective of this work was to develop a modern model that could be used directly at the avalanche stations. Classification of winter precipitations into dangerous snowfalls and non‑dangerous ones was performed by two following ways: the linear discriminant function (canonical analysis and artificial neural networks. Observational data on weather and avalanches in the gorge Kishi Almaty in the gorge Kishi Almaty were used as a training sample. Coefficients for the canonical variables were calculated by the software «Statistica» (Russian version 6.0, and then the necessary formula had been constructed. The accuracy of the above classification was 96%. Simulator by the authors L.N. Yasnitsky and F.М. Cherepanov was used to learn the neural networks. The trained neural network demonstrated 98% accuracy of the classification. Prepared statistical models are recommended to be tested at the snow‑avalanche stations. Results of the tests will be used for estimation of the model quality and its readiness for the operational work. In future, we plan to apply these models for classification of the avalanche danger by the five‑point international scale.

  13. A simple model for studying interacting networks

    Science.gov (United States)

    Liu, Wenjia; Jolad, Shivakumar; Schmittmann, Beate; Zia, R. K. P.

    2011-03-01

    Many specific physical networks (e.g., internet, power grid, interstates), have been characterized in considerable detail, but in isolation from each other. Yet, each of these networks supports the functions of the others, and so far, little is known about how their interactions affect their structure and functionality. To address this issue, we consider two coupled model networks. Each network is relatively simple, with a fixed set of nodes, but dynamically generated set of links which has a preferred degree, κ . In the stationary state, the degree distribution has exponential tails (far from κ), an attribute which we can explain. Next, we consider two such networks with different κ 's, reminiscent of two social groups, e.g., extroverts and introverts. Finally, we let these networks interact by establishing a controllable fraction of cross links. The resulting distribution of links, both within and across the two model networks, is investigated and discussed, along with some potential consequences for real networks. Supported in part by NSF-DMR-0705152 and 1005417.

  14. ICA model order selection of task co-activation networks.

    Science.gov (United States)

    Ray, Kimberly L; McKay, D Reese; Fox, Peter M; Riedel, Michael C; Uecker, Angela M; Beckmann, Christian F; Smith, Stephen M; Fox, Peter T; Laird, Angela R

    2013-01-01

    Independent component analysis (ICA) has become a widely used method for extracting functional networks in the brain during rest and task. Historically, preferred ICA dimensionality has widely varied within the neuroimaging community, but typically varies between 20 and 100 components. This can be problematic when comparing results across multiple studies because of the impact ICA dimensionality has on the topology of its resultant components. Recent studies have demonstrated that ICA can be applied to peak activation coordinates archived in a large neuroimaging database (i.e., BrainMap Database) to yield whole-brain task-based co-activation networks. A strength of applying ICA to BrainMap data is that the vast amount of metadata in BrainMap can be used to quantitatively assess tasks and cognitive processes contributing to each component. In this study, we investigated the effect of model order on the distribution of functional properties across networks as a method for identifying the most informative decompositions of BrainMap-based ICA components. Our findings suggest dimensionality of 20 for low model order ICA to examine large-scale brain networks, and dimensionality of 70 to provide insight into how large-scale networks fractionate into sub-networks. We also provide a functional and organizational assessment of visual, motor, emotion, and interoceptive task co-activation networks as they fractionate from low to high model-orders.

  15. A mixture copula Bayesian network model for multimodal genomic data

    Directory of Open Access Journals (Sweden)

    Qingyang Zhang

    2017-04-01

    Full Text Available Gaussian Bayesian networks have become a widely used framework to estimate directed associations between joint Gaussian variables, where the network structure encodes the decomposition of multivariate normal density into local terms. However, the resulting estimates can be inaccurate when the normality assumption is moderately or severely violated, making it unsuitable for dealing with recent genomic data such as the Cancer Genome Atlas data. In the present paper, we propose a mixture copula Bayesian network model which provides great flexibility in modeling non-Gaussian and multimodal data for causal inference. The parameters in mixture copula functions can be efficiently estimated by a routine expectation–maximization algorithm. A heuristic search algorithm based on Bayesian information criterion is developed to estimate the network structure, and prediction can be further improved by the best-scoring network out of multiple predictions from random initial values. Our method outperforms Gaussian Bayesian networks and regular copula Bayesian networks in terms of modeling flexibility and prediction accuracy, as demonstrated using a cell signaling data set. We apply the proposed methods to the Cancer Genome Atlas data to study the genetic and epigenetic pathways that underlie serous ovarian cancer.

  16. A mixture copula Bayesian network model for multimodal genomic data.

    Science.gov (United States)

    Zhang, Qingyang; Shi, Xuan

    2017-01-01

    Gaussian Bayesian networks have become a widely used framework to estimate directed associations between joint Gaussian variables, where the network structure encodes the decomposition of multivariate normal density into local terms. However, the resulting estimates can be inaccurate when the normality assumption is moderately or severely violated, making it unsuitable for dealing with recent genomic data such as the Cancer Genome Atlas data. In the present paper, we propose a mixture copula Bayesian network model which provides great flexibility in modeling non-Gaussian and multimodal data for causal inference. The parameters in mixture copula functions can be efficiently estimated by a routine expectation-maximization algorithm. A heuristic search algorithm based on Bayesian information criterion is developed to estimate the network structure, and prediction can be further improved by the best-scoring network out of multiple predictions from random initial values. Our method outperforms Gaussian Bayesian networks and regular copula Bayesian networks in terms of modeling flexibility and prediction accuracy, as demonstrated using a cell signaling data set. We apply the proposed methods to the Cancer Genome Atlas data to study the genetic and epigenetic pathways that underlie serous ovarian cancer.

  17. Neural network approaches for noisy language modeling.

    Science.gov (United States)

    Li, Jun; Ouazzane, Karim; Kazemian, Hassan B; Afzal, Muhammad Sajid

    2013-11-01

    Text entry from people is not only grammatical and distinct, but also noisy. For example, a user's typing stream contains all the information about the user's interaction with computer using a QWERTY keyboard, which may include the user's typing mistakes as well as specific vocabulary, typing habit, and typing performance. In particular, these features are obvious in disabled users' typing streams. This paper proposes a new concept called noisy language modeling by further developing information theory and applies neural networks to one of its specific application-typing stream. This paper experimentally uses a neural network approach to analyze the disabled users' typing streams both in general and specific ways to identify their typing behaviors and subsequently, to make typing predictions and typing corrections. In this paper, a focused time-delay neural network (FTDNN) language model, a time gap model, a prediction model based on time gap, and a probabilistic neural network model (PNN) are developed. A 38% first hitting rate (HR) and a 53% first three HR in symbol prediction are obtained based on the analysis of a user's typing history through the FTDNN language modeling, while the modeling results using the time gap prediction model and the PNN model demonstrate that the correction rates lie predominantly in between 65% and 90% with the current testing samples, and 70% of all test scores above basic correction rates, respectively. The modeling process demonstrates that a neural network is a suitable and robust language modeling tool to analyze the noisy language stream. The research also paves the way for practical application development in areas such as informational analysis, text prediction, and error correction by providing a theoretical basis of neural network approaches for noisy language modeling.

  18. A quantum-implementable neural network model

    Science.gov (United States)

    Chen, Jialin; Wang, Lingli; Charbon, Edoardo

    2017-10-01

    A quantum-implementable neural network, namely quantum probability neural network (QPNN) model, is proposed in this paper. QPNN can use quantum parallelism to trace all possible network states to improve the result. Due to its unique quantum nature, this model is robust to several quantum noises under certain conditions, which can be efficiently implemented by the qubus quantum computer. Another advantage is that QPNN can be used as memory to retrieve the most relevant data and even to generate new data. The MATLAB experimental results of Iris data classification and MNIST handwriting recognition show that much less neuron resources are required in QPNN to obtain a good result than the classical feedforward neural network. The proposed QPNN model indicates that quantum effects are useful for real-life classification tasks.

  19. Telestroke network business model strategies.

    Science.gov (United States)

    Fanale, Christopher V; Demaerschalk, Bart M

    2012-10-01

    Our objective is to summarize the evidence that supports the reliability of telemedicine for diagnosis and efficacy in acute stroke treatment, identify strategies for funding the development of a telestroke network, and to present issues with respect to economic sustainability, cost effectiveness, and the status of reimbursement for telestroke. Copyright © 2012 National Stroke Association. Published by Elsevier Inc. All rights reserved.

  20. Complex networks under dynamic repair model

    Science.gov (United States)

    Chaoqi, Fu; Ying, Wang; Kun, Zhao; Yangjun, Gao

    2018-01-01

    Invulnerability is not the only factor of importance when considering complex networks' security. It is also critical to have an effective and reasonable repair strategy. Existing research on network repair is confined to the static model. The dynamic model makes better use of the redundant capacity of repaired nodes and repairs the damaged network more efficiently than the static model; however, the dynamic repair model is complex and polytropic. In this paper, we construct a dynamic repair model and systematically describe the energy-transfer relationships between nodes in the repair process of the failure network. Nodes are divided into three types, corresponding to three structures. We find that the strong coupling structure is responsible for secondary failure of the repaired nodes and propose an algorithm that can select the most suitable targets (nodes or links) to repair the failure network with minimal cost. Two types of repair strategies are identified, with different effects under the two energy-transfer rules. The research results enable a more flexible approach to network repair.

  1. Modeling acquaintance networks based on balance theory

    Directory of Open Access Journals (Sweden)

    Vukašinović Vida

    2014-09-01

    Full Text Available An acquaintance network is a social structure made up of a set of actors and the ties between them. These ties change dynamically as a consequence of incessant interactions between the actors. In this paper we introduce a social network model called the Interaction-Based (IB model that involves well-known sociological principles. The connections between the actors and the strength of the connections are influenced by the continuous positive and negative interactions between the actors and, vice versa, the future interactions are more likely to happen between the actors that are connected with stronger ties. The model is also inspired by the social behavior of animal species, particularly that of ants in their colony. A model evaluation showed that the IB model turned out to be sparse. The model has a small diameter and an average path length that grows in proportion to the logarithm of the number of vertices. The clustering coefficient is relatively high, and its value stabilizes in larger networks. The degree distributions are slightly right-skewed. In the mature phase of the IB model, i.e., when the number of edges does not change significantly, most of the network properties do not change significantly either. The IB model was found to be the best of all the compared models in simulating the e-mail URV (University Rovira i Virgili of Tarragona network because the properties of the IB model more closely matched those of the e-mail URV network than the other models

  2. Efficient Optimization Methods for Communication Network Planning and Assessment

    OpenAIRE

    Kiese, Moritz

    2010-01-01

    In this work, we develop efficient mathematical planning methods to design communication networks. First, we examine future technologies for optical backbone networks. As new, more intelligent nodes cause higher dynamics in the transport networks, fast planning methods are required. To this end, we develop a heuristic planning algorithm. The evaluation of the cost-efficiency of new, adapative transmission techniques comprises the second topic of this section. In the second part of this work, ...

  3. Spatial-temporal modeling of malware propagation in networks.

    Science.gov (United States)

    Chen, Zesheng; Ji, Chuanyi

    2005-09-01

    Network security is an important task of network management. One threat to network security is malware (malicious software) propagation. One type of malware is called topological scanning that spreads based on topology information. The focus of this work is on modeling the spread of topological malwares, which is important for understanding their potential damages, and for developing countermeasures to protect the network infrastructure. Our model is motivated by probabilistic graphs, which have been widely investigated in machine learning. We first use a graphical representation to abstract the propagation of malwares that employ different scanning methods. We then use a spatial-temporal random process to describe the statistical dependence of malware propagation in arbitrary topologies. As the spatial dependence is particularly difficult to characterize, the problem becomes how to use simple (i.e., biased) models to approximate the spatially dependent process. In particular, we propose the independent model and the Markov model as simple approximations. We conduct both theoretical analysis and extensive simulations on large networks using both real measurements and synthesized topologies to test the performance of the proposed models. Our results show that the independent model can capture temporal dependence and detailed topology information and, thus, outperforms the previous models, whereas the Markov model incorporates a certain spatial dependence and, thus, achieves a greater accuracy in characterizing both transient and equilibrium behaviors of malware propagation.

  4. Flood routing modelling with Artificial Neural Networks

    Directory of Open Access Journals (Sweden)

    R. Peters

    2006-01-01

    Full Text Available For the modelling of the flood routing in the lower reaches of the Freiberger Mulde river and its tributaries the one-dimensional hydrodynamic modelling system HEC-RAS has been applied. Furthermore, this model was used to generate a database to train multilayer feedforward networks. To guarantee numerical stability for the hydrodynamic modelling of some 60 km of streamcourse an adequate resolution in space requires very small calculation time steps, which are some two orders of magnitude smaller than the input data resolution. This leads to quite high computation requirements seriously restricting the application – especially when dealing with real time operations such as online flood forecasting. In order to solve this problem we tested the application of Artificial Neural Networks (ANN. First studies show the ability of adequately trained multilayer feedforward networks (MLFN to reproduce the model performance.

  5. Optimal transportation networks models and theory

    CERN Document Server

    Bernot, Marc; Morel, Jean-Michel

    2009-01-01

    The transportation problem can be formalized as the problem of finding the optimal way to transport a given measure into another with the same mass. In contrast to the Monge-Kantorovitch problem, recent approaches model the branched structure of such supply networks as minima of an energy functional whose essential feature is to favour wide roads. Such a branched structure is observable in ground transportation networks, in draining and irrigation systems, in electrical power supply systems and in natural counterparts such as blood vessels or the branches of trees. These lectures provide mathematical proof of several existence, structure and regularity properties empirically observed in transportation networks. The link with previous discrete physical models of irrigation and erosion models in geomorphology and with discrete telecommunication and transportation models is discussed. It will be mathematically proven that the majority fit in the simple model sketched in this volume.

  6. Infection dynamics on spatial small-world network models

    Science.gov (United States)

    Iotti, Bryan; Antonioni, Alberto; Bullock, Seth; Darabos, Christian; Tomassini, Marco; Giacobini, Mario

    2017-11-01

    The study of complex networks, and in particular of social networks, has mostly concentrated on relational networks, abstracting the distance between nodes. Spatial networks are, however, extremely relevant in our daily lives, and a large body of research exists to show that the distances between nodes greatly influence the cost and probability of establishing and maintaining a link. A random geometric graph (RGG) is the main type of synthetic network model used to mimic the statistical properties and behavior of many social networks. We propose a model, called REDS, that extends energy-constrained RGGs to account for the synergic effect of sharing the cost of a link with our neighbors, as is observed in real relational networks. We apply both the standard Watts-Strogatz rewiring procedure and another method that conserves the degree distribution of the network. The second technique was developed to eliminate unwanted forms of spatial correlation between the degree of nodes that are affected by rewiring, limiting the effect on other properties such as clustering and assortativity. We analyze both the statistical properties of these two network types and their epidemiological behavior when used as a substrate for a standard susceptible-infected-susceptible compartmental model. We consider and discuss the differences in properties and behavior between RGGs and REDS as rewiring increases and as infection parameters are changed. We report considerable differences both between the network types and, in the case of REDS, between the two rewiring schemes. We conclude that REDS represent, with the application of these rewiring mechanisms, extremely useful and interesting tools in the study of social and epidemiological phenomena in synthetic complex networks.

  7. Innovative research of AD HOC network mobility model

    Science.gov (United States)

    Chen, Xin

    2017-08-01

    It is difficult for researchers of AD HOC network to conduct actual deployment during experimental stage as the network topology is changeable and location of nodes is unfixed. Thus simulation still remains the main research method of the network. Mobility model is an important component of AD HOC network simulation. It is used to describe the movement pattern of nodes in AD HOC network (including location and velocity, etc.) and decides the movement trail of nodes, playing as the abstraction of the movement modes of nodes. Therefore, mobility model which simulates node movement is an important foundation for simulation research. In AD HOC network research, mobility model shall reflect the movement law of nodes as truly as possible. In this paper, node generally refers to the wireless equipment people carry. The main research contents include how nodes avoid obstacles during movement process and the impacts of obstacles on the mutual relation among nodes, based on which a Node Self Avoiding Obstacle, i.e. NASO model is established in AD HOC network.

  8. Non-consensus Opinion Models on Complex Networks

    Science.gov (United States)

    Li, Qian; Braunstein, Lidia A.; Wang, Huijuan; Shao, Jia; Stanley, H. Eugene; Havlin, Shlomo

    2013-04-01

    Social dynamic opinion models have been widely studied to understand how interactions among individuals cause opinions to evolve. Most opinion models that utilize spin interaction models usually produce a consensus steady state in which only one opinion exists. Because in reality different opinions usually coexist, we focus on non-consensus opinion models in which above a certain threshold two opinions coexist in a stable relationship. We revisit and extend the non-consensus opinion (NCO) model introduced by Shao et al. (Phys. Rev. Lett. 103:01870, 2009). The NCO model in random networks displays a second order phase transition that belongs to regular mean field percolation and is characterized by the appearance (above a certain threshold) of a large spanning cluster of the minority opinion. We generalize the NCO model by adding a weight factor W to each individual's original opinion when determining their future opinion (NCO W model). We find that as W increases the minority opinion holders tend to form stable clusters with a smaller initial minority fraction than in the NCO model. We also revisit another non-consensus opinion model based on the NCO model, the inflexible contrarian opinion (ICO) model (Li et al. in Phys. Rev. E 84:066101, 2011), which introduces inflexible contrarians to model the competition between two opinions in a steady state. Inflexible contrarians are individuals that never change their original opinion but may influence the opinions of others. To place the inflexible contrarians in the ICO model we use two different strategies, random placement and one in which high-degree nodes are targeted. The inflexible contrarians effectively decrease the size of the largest rival-opinion cluster in both strategies, but the effect is more pronounced under the targeted method. All of the above models have previously been explored in terms of a single network, but human communities are usually interconnected, not isolated. Because opinions propagate not

  9. A Method for Automated Planning of FTTH Access Network Infrastructures

    DEFF Research Database (Denmark)

    Riaz, Muhammad Tahir; Pedersen, Jens Myrup; Madsen, Ole Brun

    2005-01-01

    In this paper a method for automated planning of Fiber to the Home (FTTH) access networks is proposed. We introduced a systematic approach for planning access network infrastructure. The GIS data and a set of algorithms were employed to make the planning process more automatic. The method explains...

  10. A network security situation prediction model based on wavelet neural network with optimized parameters

    Directory of Open Access Journals (Sweden)

    Haibo Zhang

    2016-08-01

    Full Text Available The security incidents ion networks are sudden and uncertain, it is very hard to precisely predict the network security situation by traditional methods. In order to improve the prediction accuracy of the network security situation, we build a network security situation prediction model based on Wavelet Neural Network (WNN with optimized parameters by the Improved Niche Genetic Algorithm (INGA. The proposed model adopts WNN which has strong nonlinear ability and fault-tolerance performance. Also, the parameters for WNN are optimized through the adaptive genetic algorithm (GA so that WNN searches more effectively. Considering the problem that the adaptive GA converges slowly and easily turns to the premature problem, we introduce a novel niche technology with a dynamic fuzzy clustering and elimination mechanism to solve the premature convergence of the GA. Our final simulation results show that the proposed INGA-WNN prediction model is more reliable and effective, and it achieves faster convergence-speed and higher prediction accuracy than the Genetic Algorithm-Wavelet Neural Network (GA-WNN, Genetic Algorithm-Back Propagation Neural Network (GA-BPNN and WNN.

  11. DETECTING NETWORK ATTACKS IN COMPUTER NETWORKS BY USING DATA MINING METHODS

    OpenAIRE

    Platonov, V. V.; Semenov, P. O.

    2016-01-01

    The article describes an approach to the development of an intrusion detection system for computer networks. It is shown that the usage of several data mining methods and tools can improve the efficiency of protection computer networks against network at-tacks due to the combination of the benefits of signature detection and anomalies detection and the opportunity of adaptation the sys-tem for hardware and software structure of the computer network.

  12. Transportation and dynamic networks: Models, theory, and applications to supply chains, electric power, and financial networks

    Science.gov (United States)

    Liu, Zugang

    Network systems, including transportation and logistic systems, electric power generation and distribution networks as well as financial networks, provide the critical infrastructure for the functioning of our societies and economies. The understanding of the dynamic behavior of such systems is also crucial to national security and prosperity. The identification of new connections between distinct network systems is the inspiration for the research in this dissertation. In particular, I answer two questions raised by Beckmann, McGuire, and Winsten (1956) and Copeland (1952) over half a century ago, which are, respectively, how are electric power flows related to transportation flows and does money flow like water or electricity? In addition, in this dissertation, I achieve the following: (1) I establish the relationships between transportation networks and three other classes of complex network systems: supply chain networks, electric power generation and transmission networks, and financial networks with intermediation. The establishment of such connections provides novel theoretical insights as well as new pricing mechanisms, and efficient computational methods. (2) I develop new modeling frameworks based on evolutionary variational inequality theory that capture the dynamics of such network systems in terms of the time-varying flows and incurred costs, prices, and, where applicable, profits. This dissertation studies the dynamics of such network systems by addressing both internal competition and/or cooperation, and external changes, such as varying costs and demands. (3) I focus, in depth, on electric power supply chains. By exploiting the relationships between transportation networks and electric power supply chains, I develop a large-scale network model that integrates electric power supply chains and fuel supply markets. The model captures both the economic transactions as well as the physical transmission constraints. The model is then applied to the New

  13. Anomaly-based Network Intrusion Detection Methods

    Directory of Open Access Journals (Sweden)

    Pavel Nevlud

    2013-01-01

    Full Text Available The article deals with detection of network anomalies. Network anomalies include everything that is quite different from the normal operation. For detection of anomalies were used machine learning systems. Machine learning can be considered as a support or a limited type of artificial intelligence. A machine learning system usually starts with some knowledge and a corresponding knowledge organization so that it can interpret, analyse, and test the knowledge acquired. There are several machine learning techniques available. We tested Decision tree learning and Bayesian networks. The open source data-mining framework WEKA was the tool we used for testing the classify, cluster, association algorithms and for visualization of our results. The WEKA is a collection of machine learning algorithms for data mining tasks.

  14. Artificial neural networks modeling gene-environment interaction

    Directory of Open Access Journals (Sweden)

    Günther Frauke

    2012-05-01

    Full Text Available Abstract Background Gene-environment interactions play an important role in the etiological pathway of complex diseases. An appropriate statistical method for handling a wide variety of complex situations involving interactions between variables is still lacking, especially when continuous variables are involved. The aim of this paper is to explore the ability of neural networks to model different structures of gene-environment interactions. A simulation study is set up to compare neural networks with standard logistic regression models. Eight different structures of gene-environment interactions are investigated. These structures are characterized by penetrance functions that are based on sigmoid functions or on combinations of linear and non-linear effects of a continuous environmental factor and a genetic factor with main effect or with a masking effect only. Results In our simulation study, neural networks are more successful in modeling gene-environment interactions than logistic regression models. This outperfomance is especially pronounced when modeling sigmoid penetrance functions, when distinguishing between linear and nonlinear components, and when modeling masking effects of the genetic factor. Conclusion Our study shows that neural networks are a promising approach for analyzing gene-environment interactions. Especially, if no prior knowledge of the correct nature of the relationship between co-variables and response variable is present, neural networks provide a valuable alternative to regression methods that are limited to the analysis of linearly separable data.

  15. Modelling complex networks by random hierarchical graphs

    Directory of Open Access Journals (Sweden)

    M.Wróbel

    2008-06-01

    Full Text Available Numerous complex networks contain special patterns, called network motifs. These are specific subgraphs, which occur oftener than in randomized networks of Erdős-Rényi type. We choose one of them, the triangle, and build a family of random hierarchical graphs, being Sierpiński gasket-based graphs with random "decorations". We calculate the important characteristics of these graphs - average degree, average shortest path length, small-world graph family characteristics. They depend on probability of decorations. We analyze the Ising model on our graphs and describe its critical properties using a renormalization-group technique.

  16. A Network Model of Credit Risk Contagion

    Directory of Open Access Journals (Sweden)

    Ting-Qiang Chen

    2012-01-01

    Full Text Available A network model of credit risk contagion is presented, in which the effect of behaviors of credit risk holders and the financial market regulators and the network structure are considered. By introducing the stochastic dominance theory, we discussed, respectively, the effect mechanisms of the degree of individual relationship, individual attitude to credit risk contagion, the individual ability to resist credit risk contagion, the monitoring strength of the financial market regulators, and the network structure on credit risk contagion. Then some derived and proofed propositions were verified through numerical simulations.

  17. Model-based clustering in networks with Stochastic Community Finding

    OpenAIRE

    McDaid, Aaron F.; Murphy, Brendan Thomas; Friel, Nial; Hurley, Neil J.

    2012-01-01

    In the model-based clustering of networks, blockmodelling may be used to identify roles in the network. We identify a special case of the Stochastic Block Model (SBM) where we constrain the cluster-cluster interactions such that the density inside the clusters of nodes is expected to be greater than the density between clusters. This corresponds to the intuition behind community-finding methods, where nodes tend to clustered together if they link to each other. We call this model Stochastic C...

  18. Modelling of word usage frequency dynamics using artificial neural network

    Science.gov (United States)

    Maslennikova, Yu S.; Bochkarev, V. V.; Voloskov, D. S.

    2014-03-01

    In this paper the method for modelling of word usage frequency time series is proposed. An artificial feedforward neural network was used to predict word usage frequencies. The neural network was trained using the maximum likelihood criterion. The Google Books Ngram corpus was used for the analysis. This database provides a large amount of data on frequency of specific word forms for 7 languages. Statistical modelling of word usage frequency time series allows finding optimal fitting and filtering algorithm for subsequent lexicographic analysis and verification of frequency trend models.

  19. Deep space network software cost estimation model

    Science.gov (United States)

    Tausworthe, R. C.

    1981-01-01

    A parametric software cost estimation model prepared for Jet PRopulsion Laboratory (JPL) Deep Space Network (DSN) Data System implementation tasks is described. The resource estimation mdel modifies and combines a number of existing models. The model calibrates the task magnitude and difficulty, development environment, and software technology effects through prompted responses to a set of approximately 50 questions. Parameters in the model are adjusted to fit JPL software life-cycle statistics.

  20. Continuum Modeling of Biological Network Formation

    KAUST Repository

    Albi, Giacomo

    2017-04-10

    We present an overview of recent analytical and numerical results for the elliptic–parabolic system of partial differential equations proposed by Hu and Cai, which models the formation of biological transportation networks. The model describes the pressure field using a Darcy type equation and the dynamics of the conductance network under pressure force effects. Randomness in the material structure is represented by a linear diffusion term and conductance relaxation by an algebraic decay term. We first introduce micro- and mesoscopic models and show how they are connected to the macroscopic PDE system. Then, we provide an overview of analytical results for the PDE model, focusing mainly on the existence of weak and mild solutions and analysis of the steady states. The analytical part is complemented by extensive numerical simulations. We propose a discretization based on finite elements and study the qualitative properties of network structures for various parameter values.

  1. Stochastic modeling and analysis of telecoms networks

    CERN Document Server

    Decreusefond, Laurent

    2012-01-01

    This book addresses the stochastic modeling of telecommunication networks, introducing the main mathematical tools for that purpose, such as Markov processes, real and spatial point processes and stochastic recursions, and presenting a wide list of results on stability, performances and comparison of systems.The authors propose a comprehensive mathematical construction of the foundations of stochastic network theory: Markov chains, continuous time Markov chains are extensively studied using an original martingale-based approach. A complete presentation of stochastic recursions from an

  2. Neural networks as models of psychopathology.

    Science.gov (United States)

    Aakerlund, L; Hemmingsen, R

    1998-04-01

    Neural network modeling is situated between neurobiology, cognitive science, and neuropsychology. The structural and functional resemblance with biological computation has made artificial neural networks (ANN) useful for exploring the relationship between neurobiology and computational performance, i.e., cognition and behavior. This review provides an introduction to the theory of ANN and how they have linked theories from neurobiology and psychopathology in schizophrenia, affective disorders, and dementia.

  3. Decomposed Implicit Models of Piecewise - Linear Networks

    Directory of Open Access Journals (Sweden)

    J. Brzobohaty

    1992-05-01

    Full Text Available The general matrix form of the implicit description of a piecewise-linear (PWL network and the symbolic block diagram of the corresponding circuit model are proposed. Their decomposed forms enable us to determine quite separately the existence of the individual breakpoints of the resultant PWL characteristic and their coordinates using independent network parameters. For the two-diode and three-diode cases all the attainable types of the PWL characteristic are introduced.

  4. Automated Modeling of Microwave Structures by Enhanced Neural Networks

    Directory of Open Access Journals (Sweden)

    Z. Raida

    2006-12-01

    Full Text Available The paper describes the methodology of the automated creation of neural models of microwave structures. During the creation process, artificial neural networks are trained using the combination of the particle swarm optimization and the quasi-Newton method to avoid critical training problems of the conventional neural nets. In the paper, neural networks are used to approximate the behavior of a planar microwave filter (moment method, Zeland IE3D. In order to evaluate the efficiency of neural modeling, global optimizations are performed using numerical models and neural ones. Both approaches are compared from the viewpoint of CPU-time demands and the accuracy. Considering conclusions, methodological recommendations for including neural networks to the microwave design are formulated.

  5. Using analytic network process for evaluating mobile text entry methods.

    Science.gov (United States)

    Ocampo, Lanndon A; Seva, Rosemary R

    2016-01-01

    This paper highlights a preference evaluation methodology for text entry methods in a touch keyboard smartphone using analytic network process (ANP). Evaluation of text entry methods in literature mainly considers speed and accuracy. This study presents an alternative means for selecting text entry method that considers user preference. A case study was carried out with a group of experts who were asked to develop a selection decision model of five text entry methods. The decision problem is flexible enough to reflect interdependencies of decision elements that are necessary in describing real-life conditions. Results showed that QWERTY method is more preferred than other text entry methods while arrangement of keys is the most preferred criterion in characterizing a sound method. Sensitivity analysis using simulation of normally distributed random numbers under fairly large perturbation reported the foregoing results reliable enough to reflect robust judgment. The main contribution of this paper is the introduction of a multi-criteria decision approach in the preference evaluation of text entry methods. Copyright © 2015 Elsevier Ltd and The Ergonomics Society. All rights reserved.

  6. Green Network Planning Model for Optical Backbones

    DEFF Research Database (Denmark)

    Gutierrez Lopez, Jose Manuel; Riaz, M. Tahir; Jensen, Michael

    2010-01-01

    on the environment in general. In network planning there are existing planning models focused on QoS provisioning, investment minimization or combinations of both and other parameters. But there is a lack of a model for designing green optical backbones. This paper presents novel ideas to be able to define...

  7. Empirical generalization assessment of neural network models

    DEFF Research Database (Denmark)

    Larsen, Jan; Hansen, Lars Kai

    1995-01-01

    This paper addresses the assessment of generalization performance of neural network models by use of empirical techniques. We suggest to use the cross-validation scheme combined with a resampling technique to obtain an estimate of the generalization performance distribution of a specific model...

  8. Evaluation of EOR Processes Using Network Models

    DEFF Research Database (Denmark)

    Larsen, Jens Kjell; Krogsbøll, Anette

    1998-01-01

    The report consists of the following parts: 1) Studies of wetting properties of model fluids and fluid mixtures aimed at an optimal selection of candidates for micromodel experiments. 2) Experimental studies of multiphase transport properties using physical models of porous networks (micromodels...

  9. Phenomenological network models: Lessons for epilepsy surgery.

    Science.gov (United States)

    Hebbink, Jurgen; Meijer, Hil; Huiskamp, Geertjan; van Gils, Stephan; Leijten, Frans

    2017-10-01

    The current opinion in epilepsy surgery is that successful surgery is about removing pathological cortex in the anatomic sense. This contrasts with recent developments in epilepsy research, where epilepsy is seen as a network disease. Computational models offer a framework to investigate the influence of networks, as well as local tissue properties, and to explore alternative resection strategies. Here we study, using such a model, the influence of connections on seizures and how this might change our traditional views of epilepsy surgery. We use a simple network model consisting of four interconnected neuronal populations. One of these populations can be made hyperexcitable, modeling a pathological region of cortex. Using model simulations, the effect of surgery on the seizure rate is studied. We find that removal of the hyperexcitable population is, in most cases, not the best approach to reduce the seizure rate. Removal of normal populations located at a crucial spot in the network, the "driver," is typically more effective in reducing seizure rate. This work strengthens the idea that network structure and connections may be more important than localizing the pathological node. This can explain why lesionectomy may not always be sufficient. © 2017 The Authors. Epilepsia published by Wiley Periodicals, Inc. on behalf of International League Against Epilepsy.

  10. Mixed Methods Analysis of Enterprise Social Networks

    DEFF Research Database (Denmark)

    Behrendt, Sebastian; Richter, Alexander; Trier, Matthias

    2014-01-01

    The increasing use of enterprise social networks (ESN) generates vast amounts of data, giving researchers and managerial decision makers unprecedented opportunities for analysis. However, more transparency about the available data dimensions and how these can be combined is needed to yield accurate...

  11. Heuristic urban transportation network design method, a multilayer coevolution approach

    Science.gov (United States)

    Ding, Rui; Ujang, Norsidah; Hamid, Hussain bin; Manan, Mohd Shahrudin Abd; Li, Rong; Wu, Jianjun

    2017-08-01

    The design of urban transportation networks plays a key role in the urban planning process, and the coevolution of urban networks has recently garnered significant attention in literature. However, most of these recent articles are based on networks that are essentially planar. In this research, we propose a heuristic multilayer urban network coevolution model with lower layer network and upper layer network that are associated with growth and stimulate one another. We first use the relative neighbourhood graph and the Gabriel graph to simulate the structure of rail and road networks, respectively. With simulation we find that when a specific number of nodes are added, the total travel cost ratio between an expanded network and the initial lower layer network has the lowest value. The cooperation strength Λ and the changeable parameter average operation speed ratio Θ show that transit users' route choices change dramatically through the coevolution process and that their decisions, in turn, affect the multilayer network structure. We also note that the simulated relation between the Gini coefficient of the betweenness centrality, Θ and Λ have an optimal point for network design. This research could inspire the analysis of urban network topology features and the assessment of urban growth trends.

  12. Dynamic baseline detection method for power data network service

    Science.gov (United States)

    Chen, Wei

    2017-08-01

    This paper proposes a dynamic baseline Traffic detection Method which is based on the historical traffic data for the Power data network. The method uses Cisco's NetFlow acquisition tool to collect the original historical traffic data from network element at fixed intervals. This method uses three dimensions information including the communication port, time, traffic (number of bytes or number of packets) t. By filtering, removing the deviation value, calculating the dynamic baseline value, comparing the actual value with the baseline value, the method can detect whether the current network traffic is abnormal.

  13. Delay and Disruption Tolerant Networking MACHETE Model

    Science.gov (United States)

    Segui, John S.; Jennings, Esther H.; Gao, Jay L.

    2011-01-01

    To verify satisfaction of communication requirements imposed by unique missions, as early as 2000, the Communications Networking Group at the Jet Propulsion Laboratory (JPL) saw the need for an environment to support interplanetary communication protocol design, validation, and characterization. JPL's Multi-mission Advanced Communications Hybrid Environment for Test and Evaluation (MACHETE), described in Simulator of Space Communication Networks (NPO-41373) NASA Tech Briefs, Vol. 29, No. 8 (August 2005), p. 44, combines various commercial, non-commercial, and in-house custom tools for simulation and performance analysis of space networks. The MACHETE environment supports orbital analysis, link budget analysis, communications network simulations, and hardware-in-the-loop testing. As NASA is expanding its Space Communications and Navigation (SCaN) capabilities to support planned and future missions, building infrastructure to maintain services and developing enabling technologies, an important and broader role is seen for MACHETE in design-phase evaluation of future SCaN architectures. To support evaluation of the developing Delay Tolerant Networking (DTN) field and its applicability for space networks, JPL developed MACHETE models for DTN Bundle Protocol (BP) and Licklider/Long-haul Transmission Protocol (LTP). DTN is an Internet Research Task Force (IRTF) architecture providing communication in and/or through highly stressed networking environments such as space exploration and battlefield networks. Stressed networking environments include those with intermittent (predictable and unknown) connectivity, large and/or variable delays, and high bit error rates. To provide its services over existing domain specific protocols, the DTN protocols reside at the application layer of the TCP/IP stack, forming a store-and-forward overlay network. The key capabilities of the Bundle Protocol include custody-based reliability, the ability to cope with intermittent connectivity

  14. A comprehensive Network Security Risk Model for process control networks.

    Science.gov (United States)

    Henry, Matthew H; Haimes, Yacov Y

    2009-02-01

    The risk of cyber attacks on process control networks (PCN) is receiving significant attention due to the potentially catastrophic extent to which PCN failures can damage the infrastructures and commodity flows that they support. Risk management addresses the coupled problems of (1) reducing the likelihood that cyber attacks would succeed in disrupting PCN operation and (2) reducing the severity of consequences in the event of PCN failure or manipulation. The Network Security Risk Model (NSRM) developed in this article provides a means of evaluating the efficacy of candidate risk management policies by modeling the baseline risk and assessing expectations of risk after the implementation of candidate measures. Where existing risk models fall short of providing adequate insight into the efficacy of candidate risk management policies due to shortcomings in their structure or formulation, the NSRM provides model structure and an associated modeling methodology that captures the relevant dynamics of cyber attacks on PCN for risk analysis. This article develops the NSRM in detail in the context of an illustrative example.

  15. Modelling sequences and temporal networks with dynamic community structures.

    Science.gov (United States)

    Peixoto, Tiago P; Rosvall, Martin

    2017-09-19

    In evolving complex systems such as air traffic and social organisations, collective effects emerge from their many components' dynamic interactions. While the dynamic interactions can be represented by temporal networks with nodes and links that change over time, they remain highly complex. It is therefore often necessary to use methods that extract the temporal networks' large-scale dynamic community structure. However, such methods are subject to overfitting or suffer from effects of arbitrary, a priori-imposed timescales, which should instead be extracted from data. Here we simultaneously address both problems and develop a principled data-driven method that determines relevant timescales and identifies patterns of dynamics that take place on networks, as well as shape the networks themselves. We base our method on an arbitrary-order Markov chain model with community structure, and develop a nonparametric Bayesian inference framework that identifies the simplest such model that can explain temporal interaction data.The description of temporal networks is usually simplified in terms of their dynamic community structures, whose identification however relies on a priori assumptions. Here the authors present a data-driven method that determines relevant timescales for the dynamics and uses it to identify communities.

  16. Personalized Learning Network Teaching Model

    Science.gov (United States)

    Feng, Zhou

    Adaptive learning system on the salient features, expounded personalized learning is adaptive learning system adaptive to learners key to learning. From the perspective of design theory, put forward an adaptive learning system to learn design thinking individual model, and using data mining techniques, the initial establishment of personalized adaptive systems model of learning.

  17. An entropy method for floodplain monitoring network design

    Science.gov (United States)

    Ridolfi, E.; Yan, K.; Alfonso, L.; Di Baldassarre, G.; Napolitano, F.; Russo, F.; Bates, Paul D.

    2012-09-01

    In recent years an increasing number of flood-related fatalities has highlighted the necessity of improving flood risk management to reduce human and economic losses. In this framework, monitoring of flood-prone areas is a key factor for building a resilient environment. In this paper a method for designing a floodplain monitoring network is presented. A redundant network of cheap wireless sensors (GridStix) measuring water depth is considered over a reach of the River Dee (UK), with sensors placed both in the channel and in the floodplain. Through a Three Objective Optimization Problem (TOOP) the best layouts of sensors are evaluated, minimizing their redundancy, maximizing their joint information content and maximizing the accuracy of the observations. A simple raster-based inundation model (LISFLOOD-FP) is used to generate a synthetic GridStix data set of water stages. The Digital Elevation Model (DEM) that is used for hydraulic model building is the globally and freely available SRTM DEM.

  18. The Dissolved Oxygen Prediction Method Based on Neural Network

    Directory of Open Access Journals (Sweden)

    Zhong Xiao

    2017-01-01

    Full Text Available The dissolved oxygen (DO is oxygen dissolved in water, which is an important factor for the aquaculture. Using BP neural network method with the combination of purelin, logsig, and tansig activation functions is proposed for the prediction of aquaculture’s dissolved oxygen. The input layer, hidden layer, and output layer are introduced in detail including the weight adjustment process. The breeding data of three ponds in actual 10 consecutive days were used for experiments; these ponds were located in Beihai, Guangxi, a traditional aquaculture base in southern China. The data of the first 7 days are used for training, and the data of the latter 3 days are used for the test. Compared with the common prediction models, curve fitting (CF, autoregression (AR, grey model (GM, and support vector machines (SVM, the experimental results show that the prediction accuracy of the neural network is the highest, and all the predicted values are less than 5% of the error limit, which can meet the needs of practical applications, followed by AR, GM, SVM, and CF. The prediction model can help to improve the water quality monitoring level of aquaculture which will prevent the deterioration of water quality and the outbreak of disease.

  19. Developing the Business Modelling Method

    OpenAIRE

    Meertens, Lucas Onno; Iacob, Maria Eugenia; Nieuwenhuis, Lambertus Johannes Maria; Shishkov, B; Shishkov, Boris

    2011-01-01

    Currently, business modelling is an art, instead of a science, as no scientific method for business modelling exists. This, and the lack of using business models altogether, causes many projects to end after the pilot stage, unable to fulfil their apparent promise. We propose a structured method to create “as-is” business models in a repeatable manner. The method consists of the following steps: identify the involved roles, recognize relations among roles, specify the main activities, and qua...

  20. The research on user behavior evaluation method for network state

    Science.gov (United States)

    Zhang, Chengyuan; Xu, Haishui

    2017-08-01

    Based on the correlation between user behavior and network running state, this paper proposes a method of user behavior evaluation based on network state. Based on the analysis and evaluation methods in other fields of study, we introduce the theory and tools of data mining. Based on the network status information provided by the trusted network view, the user behavior data and the network state data are analysed. Finally, we construct the user behavior evaluation index and weight, and on this basis, we can accurately quantify the influence degree of the specific behavior of different users on the change of network running state, so as to provide the basis for user behavior control decision.

  1. Net benefits: assessing the effectiveness of clinical networks in Australia through qualitative methods

    Science.gov (United States)

    2012-01-01

    Background In the 21st century, government and industry are supplementing hierarchical, bureaucratic forms of organization with network forms, compatible with principles of devolved governance and decentralization of services. Clinical networks are employed as a key health policy approach to engage clinicians in improving patient care in Australia. With significant investment in such networks in Australia and internationally, it is important to assess their effectiveness and sustainability as implementation mechanisms. Methods In two purposively selected, musculoskeletal clinical networks, members and stakeholders were interviewed to ascertain their perceptions regarding key factors relating to network effectiveness and sustainability. We adopted a three-level approach to evaluating network effectiveness: at the community, network, and member levels, across the network lifecycle. Results Both networks studied are advisory networks displaying characteristics of the ‘enclave’ type of non-hierarchical network. They are hybrids of the mandated and natural network forms. In the short term, at member level, both networks were striving to create connectivity and collaboration of members. Over the short to medium term, at network level, both networks applied multi-disciplinary engagement in successfully developing models of care as key outputs, and disseminating information to stakeholders. In the long term, at both community and network levels, stakeholders would measure effectiveness by the broader statewide influence of the network in changing and improving practice. At community level, in the long term, stakeholders acknowledged both networks had raised the profile, and provided a ‘voice’ for musculoskeletal conditions, evidencing some progress with implementation of the network mission while pursuing additional implementation strategies. Conclusions This research sheds light on stakeholders’ perceptions of assessing clinical network effectiveness at

  2. Net benefits: assessing the effectiveness of clinical networks in Australia through qualitative methods

    Directory of Open Access Journals (Sweden)

    Cunningham Frances C

    2012-11-01

    Full Text Available Abstract Background In the 21st century, government and industry are supplementing hierarchical, bureaucratic forms of organization with network forms, compatible with principles of devolved governance and decentralization of services. Clinical networks are employed as a key health policy approach to engage clinicians in improving patient care in Australia. With significant investment in such networks in Australia and internationally, it is important to assess their effectiveness and sustainability as implementation mechanisms. Methods In two purposively selected, musculoskeletal clinical networks, members and stakeholders were interviewed to ascertain their perceptions regarding key factors relating to network effectiveness and sustainability. We adopted a three-level approach to evaluating network effectiveness: at the community, network, and member levels, across the network lifecycle. Results Both networks studied are advisory networks displaying characteristics of the ‘enclave’ type of non-hierarchical network. They are hybrids of the mandated and natural network forms. In the short term, at member level, both networks were striving to create connectivity and collaboration of members. Over the short to medium term, at network level, both networks applied multi-disciplinary engagement in successfully developing models of care as key outputs, and disseminating information to stakeholders. In the long term, at both community and network levels, stakeholders would measure effectiveness by the broader statewide influence of the network in changing and improving practice. At community level, in the long term, stakeholders acknowledged both networks had raised the profile, and provided a ‘voice’ for musculoskeletal conditions, evidencing some progress with implementation of the network mission while pursuing additional implementation strategies. Conclusions This research sheds light on stakeholders’ perceptions of assessing clinical

  3. Evolutionary method for finding communities in bipartite networks

    Science.gov (United States)

    Zhan, Weihua; Zhang, Zhongzhi; Guan, Jihong; Zhou, Shuigeng

    2011-06-01

    An important step in unveiling the relation between network structure and dynamics defined on networks is to detect communities, and numerous methods have been developed separately to identify community structure in different classes of networks, such as unipartite networks, bipartite networks, and directed networks. Here, we show that the finding of communities in such networks can be unified in a general framework—detection of community structure in bipartite networks. Moreover, we propose an evolutionary method for efficiently identifying communities in bipartite networks. To this end, we show that both unipartite and directed networks can be represented as bipartite networks, and their modularity is completely consistent with that for bipartite networks, the detection of modular structure on which can be reformulated as modularity maximization. To optimize the bipartite modularity, we develop a modified adaptive genetic algorithm (MAGA), which is shown to be especially efficient for community structure detection. The high efficiency of the MAGA is based on the following three improvements we make. First, we introduce a different measure for the informativeness of a locus instead of the standard deviation, which can exactly determine which loci mutate. This measure is the bias between the distribution of a locus over the current population and the uniform distribution of the locus, i.e., the Kullback-Leibler divergence between them. Second, we develop a reassignment technique for differentiating the informative state a locus has attained from the random state in the initial phase. Third, we present a modified mutation rule which by incorporating related operations can guarantee the convergence of the MAGA to the global optimum and can speed up the convergence process. Experimental results show that the MAGA outperforms existing methods in terms of modularity for both bipartite and unipartite networks.

  4. Modelling Users` Trust in Online Social Networks

    Directory of Open Access Journals (Sweden)

    Iacob Cătoiu

    2014-02-01

    Full Text Available Previous studies (McKnight, Lankton and Tripp, 2011; Liao, Lui and Chen, 2011 have shown the crucial role of trust when choosing to disclose sensitive information online. This is the case of online social networks users, who must disclose a certain amount of personal data in order to gain access to these online services. Taking into account privacy calculus model and the risk/benefit ratio, we propose a model of users’ trust in online social networks with four variables. We have adapted metrics for the purpose of our study and we have assessed their reliability and validity. We use a Partial Least Squares (PLS based structural equation modelling analysis, which validated all our initial assumptions, indicating that our three predictors (privacy concerns, perceived benefits and perceived risks explain 48% of the variation of users’ trust in online social networks, the resulting variable of our study. We also discuss the implications and further research opportunities of our study.

  5. Model Microvascular Networks Can Have Many Equilibria.

    Science.gov (United States)

    Karst, Nathaniel J; Geddes, John B; Carr, Russell T

    2017-03-01

    We show that large microvascular networks with realistic topologies, geometries, boundary conditions, and constitutive laws can exhibit many steady-state flow configurations. This is in direct contrast to most previous studies which have assumed, implicitly or explicitly, that a given network can only possess one equilibrium state. While our techniques are general and can be applied to any network, we focus on two distinct network types that model human tissues: perturbed honeycomb networks and random networks generated from Voronoi diagrams. We demonstrate that the disparity between observed and predicted flow directions reported in previous studies might be attributable to the presence of multiple equilibria. We show that the pathway effect, in which hematocrit is steadily increased along a series of diverging junctions, has important implications for equilibrium discovery, and that our estimates of the number of equilibria supported by these networks are conservative. If a more complete description of the plasma skimming effect that captures red blood cell allocation at junctions with high feed hematocrit were to be obtained empirically, then the number of equilibria found by our approach would at worst remain the same and would in all likelihood increase significantly.

  6. Classification Method in Integrated Information Network Using Vector Image Comparison

    Directory of Open Access Journals (Sweden)

    Zhou Yuan

    2014-05-01

    Full Text Available Wireless Integrated Information Network (WMN consists of integrated information that can get data from its surrounding, such as image, voice. To transmit information, large resource is required which decreases the service time of the network. In this paper we present a Classification Approach based on Vector Image Comparison (VIC for WMN that improve the service time of the network. The available methods for sub-region selection and conversion are also proposed.

  7. Applying Model Based Systems Engineering to NASA's Space Communications Networks

    Science.gov (United States)

    Bhasin, Kul; Barnes, Patrick; Reinert, Jessica; Golden, Bert

    2013-01-01

    System engineering practices for complex systems and networks now require that requirement, architecture, and concept of operations product development teams, simultaneously harmonize their activities to provide timely, useful and cost-effective products. When dealing with complex systems of systems, traditional systems engineering methodology quickly falls short of achieving project objectives. This approach is encumbered by the use of a number of disparate hardware and software tools, spreadsheets and documents to grasp the concept of the network design and operation. In case of NASA's space communication networks, since the networks are geographically distributed, and so are its subject matter experts, the team is challenged to create a common language and tools to produce its products. Using Model Based Systems Engineering methods and tools allows for a unified representation of the system in a model that enables a highly related level of detail. To date, Program System Engineering (PSE) team has been able to model each network from their top-level operational activities and system functions down to the atomic level through relational modeling decomposition. These models allow for a better understanding of the relationships between NASA's stakeholders, internal organizations, and impacts to all related entities due to integration and sustainment of existing systems. Understanding the existing systems is essential to accurate and detailed study of integration options being considered. In this paper, we identify the challenges the PSE team faced in its quest to unify complex legacy space communications networks and their operational processes. We describe the initial approaches undertaken and the evolution toward model based system engineering applied to produce Space Communication and Navigation (SCaN) PSE products. We will demonstrate the practice of Model Based System Engineering applied to integrating space communication networks and the summary of its

  8. A comprehensive model combining Laplace-transform finite-difference and boundary-element method for the flow behavior of a two-zone system with discrete fracture network

    Science.gov (United States)

    Jia, Pin; Cheng, Linsong; Huang, Shijun; Xu, Zhongyi; Xue, Yongchao; Cao, Renyi; Ding, Guanyang

    2017-08-01

    This paper provides a comprehensive model for the flow behavior of a two-zone system with discrete fracture network. The discrete fracture network within the inner zone is represented explicitly by fracture segments. The Laplace-transform finite-difference method is used to numerically model discrete fracture network flow, with sufficient flexibility to consider arbitrary fracture geometries and conductivity distributions. Boundary-element method and line-source functions in the Laplace domain are employed to derive a semi-analytical flow solution for the two-zone system. By imposing the continuity of flux and pressure on discrete fracture surfaces, the semi-analytical two-zone system flow model and the numerical fracture flow model are coupled dynamically. The main advantage of the approach occurring in the Laplace domain is that simulation can be done with nodes only for discrete fractures and elements for boundaries and at predetermined, discrete times. Thus, stability and convergence problems caused by time discretization are avoided and the burden of gridding and computation is decreased without loss of important fracture characteristics. The model is validated by comparison with the results from an analytical solution and a fully numerical solution. Flow regime analysis shows that a two-zone system with discrete fracture network may develop six flow regimes: fracture linear flow, bilinear flow, inner zone linear flow, inner zone pseudosteady-state flow, outer zone pseudoradial flow and outer zone boundary-dominated flow. Especially, local solutions for the inner-zone linear flow have the same form with that of a finite conductivity planar fracture and can be correlated with the total length of discrete fractures and an intercept term. In the inner zone pseudosteady-state flow period, the discrete fractures, along with the boundary of the inner zone, will act as virtual closed boundaries, due to the pressure interference caused by fracture network and the

  9. Semigroup methods for evolution equations on networks

    CERN Document Server

    Mugnolo, Delio

    2014-01-01

    This concise text is based on a series of lectures held only a few years ago and originally intended as an introduction to known results on linear hyperbolic and parabolic equations.  Yet the topic of differential equations on graphs, ramified spaces, and more general network-like objects has recently gained significant momentum and, well beyond the confines of mathematics, there is a lively interdisciplinary discourse on all aspects of so-called complex networks. Such network-like structures can be found in virtually all branches of science, engineering and the humanities, and future research thus calls for solid theoretical foundations.      This book is specifically devoted to the study of evolution equations – i.e., of time-dependent differential equations such as the heat equation, the wave equation, or the Schrödinger equation (quantum graphs) – bearing in mind that the majority of the literature in the last ten years on the subject of differential equations of graphs has been devoted to ellip...

  10. Fast reconstruction of compact context-specific metabolic network models.

    Directory of Open Access Journals (Sweden)

    Nikos Vlassis

    2014-01-01

    Full Text Available Systemic approaches to the study of a biological cell or tissue rely increasingly on the use of context-specific metabolic network models. The reconstruction of such a model from high-throughput data can routinely involve large numbers of tests under different conditions and extensive parameter tuning, which calls for fast algorithms. We present fastcore, a generic algorithm for reconstructing context-specific metabolic network models from global genome-wide metabolic network models such as Recon X. fastcore takes as input a core set of reactions that are known to be active in the context of interest (e.g., cell or tissue, and it searches for a flux consistent subnetwork of the global network that contains all reactions from the core set and a minimal set of additional reactions. Our key observation is that a minimal consistent reconstruction can be defined via a set of sparse modes of the global network, and fastcore iteratively computes such a set via a series of linear programs. Experiments on liver data demonstrate speedups of several orders of magnitude, and significantly more compact reconstructions, over a rival method. Given its simplicity and its excellent performance, fastcore can form the backbone of many future metabolic network reconstruction algorithms.

  11. Clustering network layers with the strata multilayer stochastic block model.

    Science.gov (United States)

    Stanley, Natalie; Shai, Saray; Taylor, Dane; Mucha, Peter J

    2016-01-01

    Multilayer networks are a useful data structure for simultaneously capturing multiple types of relationships between a set of nodes. In such networks, each relational definition gives rise to a layer. While each layer provides its own set of information, community structure across layers can be collectively utilized to discover and quantify underlying relational patterns between nodes. To concisely extract information from a multilayer network, we propose to identify and combine sets of layers with meaningful similarities in community structure. In this paper, we describe the "strata multilayer stochastic block model" (sMLSBM), a probabilistic model for multilayer community structure. The central extension of the model is that there exist groups of layers, called "strata", which are defined such that all layers in a given stratum have community structure described by a common stochastic block model (SBM). That is, layers in a stratum exhibit similar node-to-community assignments and SBM probability parameters. Fitting the sMLSBM to a multilayer network provides a joint clustering that yields node-to-community and layer-to-stratum assignments, which cooperatively aid one another during inference. We describe an algorithm for separating layers into their appropriate strata and an inference technique for estimating the SBM parameters for each stratum. We demonstrate our method using synthetic networks and a multilayer network inferred from data collected in the Human Microbiome Project.

  12. PREDIKSI FOREX MENGGUNAKAN MODEL NEURAL NETWORK

    Directory of Open Access Journals (Sweden)

    R. Hadapiningradja Kusumodestoni

    2015-11-01

    Full Text Available ABSTRAK Prediksi adalah salah satu teknik yang paling penting dalam menjalankan bisnis forex. Keputusan dalam memprediksi adalah sangatlah penting, karena dengan prediksi dapat membantu mengetahui nilai forex di waktu tertentu kedepan sehingga dapat mengurangi resiko kerugian. Tujuan dari penelitian ini dimaksudkan memprediksi bisnis fores menggunakan model neural network dengan data time series per 1 menit untuk mengetahui nilai akurasi prediksi sehingga dapat mengurangi resiko dalam menjalankan bisnis forex. Metode penelitian pada penelitian ini meliputi metode pengumpulan data kemudian dilanjutkan ke metode training, learning, testing menggunakan neural network. Setelah di evaluasi hasil penelitian ini menunjukan bahwa penerapan algoritma Neural Network mampu untuk memprediksi forex dengan tingkat akurasi prediksi 0.431 +/- 0.096 sehingga dengan prediksi ini dapat membantu mengurangi resiko dalam menjalankan bisnis forex. Kata kunci: prediksi, forex, neural network.

  13. Queueing models for token and slotted ring networks. Thesis

    Science.gov (United States)

    Peden, Jeffery H.

    1990-01-01

    Currently the end-to-end delay characteristics of very high speed local area networks are not well understood. The transmission speed of computer networks is increasing, and local area networks especially are finding increasing use in real time systems. Ring networks operation is generally well understood for both token rings and slotted rings. There is, however, a severe lack of queueing models for high layer operation. There are several factors which contribute to the processing delay of a packet, as opposed to the transmission delay, e.g., packet priority, its length, the user load, the processor load, the use of priority preemption, the use of preemption at packet reception, the number of processors, the number of protocol processing layers, the speed of each processor, and queue length limitations. Currently existing medium access queueing models are extended by adding modeling techniques which will handle exhaustive limited service both with and without priority traffic, and modeling capabilities are extended into the upper layers of the OSI model. Some of the model are parameterized solution methods, since it is shown that certain models do not exist as parameterized solutions, but rather as solution methods.

  14. Explorative methods in linear models

    DEFF Research Database (Denmark)

    Høskuldsson, Agnar

    2004-01-01

    The author has developed the H-method of mathematical modeling that builds up the model by parts, where each part is optimized with respect to prediction. Besides providing with better predictions than traditional methods, these methods provide with graphic procedures for analyzing different feat...... features in data. These graphic methods extend the well-known methods and results of Principal Component Analysis to any linear model. Here the graphic procedures are applied to linear regression and Ridge Regression.......The author has developed the H-method of mathematical modeling that builds up the model by parts, where each part is optimized with respect to prediction. Besides providing with better predictions than traditional methods, these methods provide with graphic procedures for analyzing different...

  15. A New Hybrid Method Logistic Regression and Feedforward Neural Network for Lung Cancer Data

    Directory of Open Access Journals (Sweden)

    Taner Tunç

    2012-01-01

    Full Text Available Logistic regression (LR is a conventional statistical technique used for data classification problem. Logistic regression is a model-based method, and it uses nonlinear model structure. Another technique used for classification is feedforward artificial neural networks. Feedforward artificial neural network is a data-based method which can model nonlinear models through its activation function. In this study, a hybrid approach of model-based logistic regression technique and data-based artificial neural network was proposed for classification purposes. The proposed approach was applied to lung cancer data, and obtained results were compared. It was seen that the proposed hybrid approach was superior to logistic regression and feedforward artificial neural networks with respect to many criteria.

  16. A Brownian model for multiclass queueing networks with finite buffers

    Science.gov (United States)

    Dai, Wanyang

    2002-07-01

    This paper is concerned with the heavy traffic behavior of a type of multiclass queueing networks with finite buffers. The network consists of d single server stations and is populated by K classes of customers. Each station has a finite capacity waiting buffer and operates under first-in first-out (FIFO) service discipline. The network is assumed to have a feedforward routing structure under a blocking scheme. A server stops working when the downstream buffer is full. The focus of this paper is on the Brownian model formulation. More specifically, the approximating Brownian model for the networks is proposed via the method of showing a pseudo-heavy-traffic limit theorem which states that the limit process is a reflecting Brownian motion (RBM) if the properly normalized d-dimensional workload process converges in distribution to a continuous process. Numerical algorithm with finite element method has been designed to effectively compute the solution of the Brownian model (W. Dai, Ph.D. thesis (1996); X. Shen et al. The finite element method for computing the stationary distribution of an SRBM in a hypercube with applications to finite buffer queueing networks, under revision for Queueing Systems).

  17. Developing the Business Modelling Method

    NARCIS (Netherlands)

    Meertens, Lucas Onno; Iacob, Maria Eugenia; Nieuwenhuis, Lambertus Johannes Maria; Shishkov, B; Shishkov, Boris

    2011-01-01

    Currently, business modelling is an art, instead of a science, as no scientific method for business modelling exists. This, and the lack of using business models altogether, causes many projects to end after the pilot stage, unable to fulfil their apparent promise. We propose a structured method to

  18. An Equilibrium-Correction Model for Dynamic Network Data

    NARCIS (Netherlands)

    D.J. Dekker (David); Ph.H.B.F. Franses (Philip Hans); D. Krackhardt (David)

    2001-01-01

    textabstractWe propose a two-stage MRQAP to analyze dynamic network data, within the framework of an equilibrium-correction (EC) model. Extensive simulation results indicate practical relevance of our method and its improvement over standard OLS. An empirical illustration additionally shows that the

  19. Network estimation in State Space Models with L1-regularization ...

    African Journals Online (AJOL)

    Microarray technologies and related methods coupled with appropriate mathematical and statistical models have made it possible to identify dynamic regulatory networks by measuring time course expression levels of many genes simultaneously. However one of the challenges is the high-dimensional nature of such data ...

  20. Spiking modular neural networks: A neural network modeling approach for hydrological processes

    National Research Council Canada - National Science Library

    Kamban Parasuraman; Amin Elshorbagy; Sean K. Carey

    2006-01-01

    .... In this study, a novel neural network model called the spiking modular neural networks (SMNNs) is proposed. An SMNN consists of an input layer, a spiking layer, and an associator neural network layer...

  1. Modeling Broadband Microwave Structures by Artificial Neural Networks

    Directory of Open Access Journals (Sweden)

    V. Otevrel

    2004-06-01

    Full Text Available The paper describes the exploitation of feed-forward neural networksand recurrent neural networks for replacing full-wave numerical modelsof microwave structures in complex microwave design tools. Building aneural model, attention is turned to the modeling accuracy and to theefficiency of building a model. Dealing with the accuracy, we describea method of increasing it by successive completing a training set.Neural models are mutually compared in order to highlight theiradvantages and disadvantages. As a reference model for comparisons,approximations based on standard cubic splines are used. Neural modelsare used to replace both the time-domain numeric models and thefrequency-domain ones.

  2. PROJECT ACTIVITY ANALYSIS WITHOUT THE NETWORK MODEL

    Directory of Open Access Journals (Sweden)

    S. Munapo

    2012-01-01

    Full Text Available

    ENGLISH ABSTRACT: This paper presents a new procedure for analysing and managing activity sequences in projects. The new procedure determines critical activities, critical path, start times, free floats, crash limits, and other useful information without the use of the network model. Even though network models have been successfully used in project management so far, there are weaknesses associated with the use. A network is not easy to generate, and dummies that are usually associated with it make the network diagram complex – and dummy activities have no meaning in the original project management problem. The network model for projects can be avoided while still obtaining all the useful information that is required for project management. What are required are the activities, their accurate durations, and their predecessors.

    AFRIKAANSE OPSOMMING: Die navorsing beskryf ’n nuwerwetse metode vir die ontleding en bestuur van die sekwensiële aktiwiteite van projekte. Die voorgestelde metode bepaal kritiese aktiwiteite, die kritieke pad, aanvangstye, speling, verhasing, en ander groothede sonder die gebruik van ’n netwerkmodel. Die metode funksioneer bevredigend in die praktyk, en omseil die administratiewe rompslomp van die tradisionele netwerkmodelle.

  3. ARTIFICIAL NEURAL NETWORK FOR MODELS OF HUMAN OPERATOR

    Directory of Open Access Journals (Sweden)

    Martin Ruzek

    2017-12-01

    Full Text Available This paper presents a new approach to mental functions modeling with the use of artificial neural networks. The artificial neural networks seems to be a promising method for the modeling of a human operator because the architecture of the ANN is directly inspired by the biological neuron. On the other hand, the classical paradigms of artificial neural networks are not suitable because they simplify too much the real processes in biological neural network. The search for a compromise between the complexity of biological neural network and the practical feasibility of the artificial network led to a new learning algorithm. This algorithm is based on the classical multilayered neural network; however, the learning rule is different. The neurons are updating their parameters in a way that is similar to real biological processes. The basic idea is that the neurons are competing for resources and the criterion to decide which neuron will survive is the usefulness of the neuron to the whole neural network. The neuron is not using "teacher" or any kind of superior system, the neuron receives only the information that is present in the biological system. The learning process can be seen as searching of some equilibrium point that is equal to a state with maximal importance of the neuron for the neural network. This position can change if the environment changes. The name of this type of learning, the homeostatic artificial neural network, originates from this idea, as it is similar to the process of homeostasis known in any living cell. The simulation results suggest that this type of learning can be useful also in other tasks of artificial learning and recognition.

  4. Method of Creation of “Core-Gisseismic Attributes” Dependences With Use of Trainable Neural Networks

    Directory of Open Access Journals (Sweden)

    Gafurov Denis

    2016-01-01

    Full Text Available The study describes methodological techniques and results of geophysical well logging and seismic data interpretation by means of trainable neural networks. Objects of research are wells and seismic materials of Talakan field. The article also presents forecast of construction and reservoir properties of Osa horizon. The paper gives an example of creation of geological (lithological -facial model of the field based on developed methodical techniques of complex interpretation of geologicgeophysical data by trainable neural network. The constructed lithological -facial model allows specifying a geological structure of the field. The developed methodical techniques and the trained neural networks may be applied to adjacent sites for research of carbonate horizons.

  5. Algebraic Statistics for Network Models

    Science.gov (United States)

    2014-02-19

    use algebra, combinatorics and Markov bases to give a constructing way of answering this question for ERGMs of interest. Question 2: How do we model...for every function. 06/06/13 Petrović. Manuscripts 8, 10. Invited lecture at the Scientific Session on Commutative Algebra and Combinatorics at the

  6. Network Modeling and Simulation (NEMSE)

    Science.gov (United States)

    2013-07-01

    Prioritized Packet Fragmentation", IEEE Trans. Multimedia , Oct. 2012. [13 SYSENG] . Defense Acquisition Guidebook, Chapter 4 System Engineering, and...2012 IEEE High Performance Extreme Computing Conference (HPEC) poster session [1 Ross]. Motivation  Air Force Research Lab needs o Capability...is virtual. These eight virtualizations were: System-in-the-Loop (SITL) using OPNET Modeler, COPE, Field Programmable Gate Array ( FPGA Physical

  7. Disease gene prioritization by integrating tissue-specific molecular networks using a robust multi-network model.

    Science.gov (United States)

    Ni, Jingchao; Koyuturk, Mehmet; Tong, Hanghang; Haines, Jonathan; Xu, Rong; Zhang, Xiang

    2016-11-10

    recover true associations more accurately than other methods in terms of AUC values, and the performance differences are significant (with paired t-test p-values less than 0.05). This validates the importance to integrate tissue-specific molecular networks for studying disease gene prioritization and show the superiority of our network models and ranking algorithms toward this purpose. The source code and datasets are available at http://nijingchao.github.io/CRstar/ .

  8. Security Modeling on the Supply Chain Networks

    Directory of Open Access Journals (Sweden)

    Marn-Ling Shing

    2007-10-01

    Full Text Available In order to keep the price down, a purchaser sends out the request for quotation to a group of suppliers in a supply chain network. The purchaser will then choose a supplier with the best combination of price and quality. A potential supplier will try to collect the related information about other suppliers so he/she can offer the best bid to the purchaser. Therefore, confidentiality becomes an important consideration for the design of a supply chain network. Chen et al. have proposed the application of the Bell-LaPadula model in the design of a secured supply chain network. In the Bell-LaPadula model, a subject can be in one of different security clearances and an object can be in one of various security classifications. All the possible combinations of (Security Clearance, Classification pair in the Bell-LaPadula model can be thought as different states in the Markov Chain model. This paper extends the work done by Chen et al., provides more details on the Markov Chain model and illustrates how to use it to monitor the security state transition in the supply chain network.

  9. An evolving model of online bipartite networks

    Science.gov (United States)

    Zhang, Chu-Xu; Zhang, Zi-Ke; Liu, Chuang

    2013-12-01

    Understanding the structure and evolution of online bipartite networks is a significant task since they play a crucial role in various e-commerce services nowadays. Recently, various attempts have been tried to propose different models, resulting in either power-law or exponential degree distributions. However, many empirical results show that the user degree distribution actually follows a shifted power-law distribution, the so-called Mandelbrot’s law, which cannot be fully described by previous models. In this paper, we propose an evolving model, considering two different user behaviors: random and preferential attachment. Extensive empirical results on two real bipartite networks, Delicious and CiteULike, show that the theoretical model can well characterize the structure of real networks for both user and object degree distributions. In addition, we introduce a structural parameter p, to demonstrate that the hybrid user behavior leads to the shifted power-law degree distribution, and the region of power-law tail will increase with the increment of p. The proposed model might shed some lights in understanding the underlying laws governing the structure of real online bipartite networks.

  10. A comparative analysis on computational methods for fitting an ERGM to biological network data

    Directory of Open Access Journals (Sweden)

    Sudipta Saha

    2015-03-01

    Full Text Available Exponential random graph models (ERGM based on graph theory are useful in studying global biological network structure using its local properties. However, computational methods for fitting such models are sensitive to the type, structure and the number of the local features of a network under study. In this paper, we compared computational methods for fitting an ERGM with local features of different types and structures. Two commonly used methods, such as the Markov Chain Monte Carlo Maximum Likelihood Estimation and the Maximum Pseudo Likelihood Estimation are considered for estimating the coefficients of network attributes. We compared the estimates of observed network to our random simulated network using both methods under ERGM. The motivation was to ascertain the extent to which an observed network would deviate from a randomly simulated network if the physical numbers of attributes were approximately same. Cut-off points of some common attributes of interest for different order of nodes were determined through simulations. We implemented our method to a known regulatory network database of Escherichia coli (E. coli.

  11. Malware Propagation and Prevention Model for Time-Varying Community Networks within Software Defined Networks

    OpenAIRE

    Lan Liu; Ryan K. L. Ko; Guangming Ren; Xiaoping Xu

    2017-01-01

    As the adoption of Software Defined Networks (SDNs) grows, the security of SDN still has several unaddressed limitations. A key network security research area is in the study of malware propagation across the SDN-enabled networks. To analyze the spreading processes of network malware (e.g., viruses) in SDN, we propose a dynamic model with a time-varying community network, inspired by research models on the spread of epidemics in complex networks across communities. We assume subnets of the ne...

  12. Networking among young global health researchers through an intensive training approach: a mixed methods exploratory study

    Science.gov (United States)

    2014-01-01

    Background Networks are increasingly regarded as essential in health research aimed at influencing practice and policies. Less research has focused on the role networking can play in researchers’ careers and its broader impacts on capacity strengthening in health research. We used the Canadian Coalition for Global Health Research (CCGHR) annual Summer Institute for New Global Health Researchers (SIs) as an opportunity to explore networking among new global health researchers. Methods A mixed-methods exploratory study was conducted among SI alumni and facilitators who had participated in at least one SI between 2004 and 2010. Alumni and facilitators completed an online short questionnaire, and a subset participated in an in-depth interview. Thematic analysis of the qualitative data was triangulated with quantitative results and CCGHR reports on SIs. Synthesis occurred through the development of a process model relevant to networking through the SIs. Results Through networking at the SIs, participants experienced decreased isolation and strengthened working relationships. Participants accessed new knowledge, opportunities, and resources through networking during the SI. Post-SI, participants reported ongoing contact and collaboration, although most participants desired more opportunities for interaction. They made suggestions for structural supports to networking among new global health researchers. Conclusions Networking at the SI contributed positively to opportunities for individuals, and contributed to the formation of a network of global health researchers. Intentional inclusion of networking in health research capacity strengthening initiatives, with supportive resources and infrastructure could create dynamic, sustainable networks accessible to global health researchers around the world. PMID:24460819

  13. Decision support systems and methods for complex networks

    Science.gov (United States)

    Huang, Zhenyu [Richland, WA; Wong, Pak Chung [Richland, WA; Ma, Jian [Richland, WA; Mackey, Patrick S [Richland, WA; Chen, Yousu [Richland, WA; Schneider, Kevin P [Seattle, WA

    2012-02-28

    Methods and systems for automated decision support in analyzing operation data from a complex network. Embodiments of the present invention utilize these algorithms and techniques not only to characterize the past and present condition of a complex network, but also to predict future conditions to help operators anticipate deteriorating and/or problem situations. In particular, embodiments of the present invention characterize network conditions from operation data using a state estimator. Contingency scenarios can then be generated based on those network conditions. For at least a portion of all of the contingency scenarios, risk indices are determined that describe the potential impact of each of those scenarios. Contingency scenarios with risk indices are presented visually as graphical representations in the context of a visual representation of the complex network. Analysis of the historical risk indices based on the graphical representations can then provide trends that allow for prediction of future network conditions.

  14. Network Forensics Method Based on Evidence Graph and Vulnerability Reasoning

    Directory of Open Access Journals (Sweden)

    Jingsha He

    2016-11-01

    Full Text Available As the Internet becomes larger in scale, more complex in structure and more diversified in traffic, the number of crimes that utilize computer technologies is also increasing at a phenomenal rate. To react to the increasing number of computer crimes, the field of computer and network forensics has emerged. The general purpose of network forensics is to find malicious users or activities by gathering and dissecting firm evidences about computer crimes, e.g., hacking. However, due to the large volume of Internet traffic, not all the traffic captured and analyzed is valuable for investigation or confirmation. After analyzing some existing network forensics methods to identify common shortcomings, we propose in this paper a new network forensics method that uses a combination of network vulnerability and network evidence graph. In our proposed method, we use vulnerability evidence and reasoning algorithm to reconstruct attack scenarios and then backtrack the network packets to find the original evidences. Our proposed method can reconstruct attack scenarios effectively and then identify multi-staged attacks through evidential reasoning. Results of experiments show that the evidence graph constructed using our method is more complete and credible while possessing the reasoning capability.

  15. Keystone Business Models for Network Security Processors

    Directory of Open Access Journals (Sweden)

    Arthur Low

    2013-07-01

    Full Text Available Network security processors are critical components of high-performance systems built for cybersecurity. Development of a network security processor requires multi-domain experience in semiconductors and complex software security applications, and multiple iterations of both software and hardware implementations. Limited by the business models in use today, such an arduous task can be undertaken only by large incumbent companies and government organizations. Neither the “fabless semiconductor” models nor the silicon intellectual-property licensing (“IP-licensing” models allow small technology companies to successfully compete. This article describes an alternative approach that produces an ongoing stream of novel network security processors for niche markets through continuous innovation by both large and small companies. This approach, referred to here as the "business ecosystem model for network security processors", includes a flexible and reconfigurable technology platform, a “keystone” business model for the company that maintains the platform architecture, and an extended ecosystem of companies that both contribute and share in the value created by innovation. New opportunities for business model innovation by participating companies are made possible by the ecosystem model. This ecosystem model builds on: i the lessons learned from the experience of the first author as a senior integrated circuit architect for providers of public-key cryptography solutions and as the owner of a semiconductor startup, and ii the latest scholarly research on technology entrepreneurship, business models, platforms, and business ecosystems. This article will be of interest to all technology entrepreneurs, but it will be of particular interest to owners of small companies that provide security solutions and to specialized security professionals seeking to launch their own companies.

  16. Biochemical Network Stochastic Simulator (BioNetS: software for stochastic modeling of biochemical networks

    Directory of Open Access Journals (Sweden)

    Elston Timothy C

    2004-03-01

    Full Text Available Abstract Background Intrinsic fluctuations due to the stochastic nature of biochemical reactions can have large effects on the response of biochemical networks. This is particularly true for pathways that involve transcriptional regulation, where generally there are two copies of each gene and the number of messenger RNA (mRNA molecules can be small. Therefore, there is a need for computational tools for developing and investigating stochastic models of biochemical networks. Results We have developed the software package Biochemical Network Stochastic Simulator (BioNetS for efficientlyand accurately simulating stochastic models of biochemical networks. BioNetS has a graphical user interface that allows models to be entered in a straightforward manner, and allows the user to specify the type of random variable (discrete or continuous for each chemical species in the network. The discrete variables are simulated using an efficient implementation of the Gillespie algorithm. For the continuous random variables, BioNetS constructs and numerically solvesthe appropriate chemical Langevin equations. The software package has been developed to scale efficiently with network size, thereby allowing large systems to be studied. BioNetS runs as a BioSpice agent and can be downloaded from http://www.biospice.org. BioNetS also can be run as a stand alone package. All the required files are accessible from http://x.amath.unc.edu/BioNetS. Conclusions We have developed BioNetS to be a reliable tool for studying the stochastic dynamics of large biochemical networks. Important features of BioNetS are its ability to handle hybrid models that consist of both continuous and discrete random variables and its ability to model cell growth and division. We have verified the accuracy and efficiency of the numerical methods by considering several test systems.

  17. A Model of Mental State Transition Network

    Science.gov (United States)

    Xiang, Hua; Jiang, Peilin; Xiao, Shuang; Ren, Fuji; Kuroiwa, Shingo

    Emotion is one of the most essential and basic attributes of human intelligence. Current AI (Artificial Intelligence) research is concentrating on physical components of emotion, rarely is it carried out from the view of psychology directly(1). Study on the model of artificial psychology is the first step in the development of human-computer interaction. As affective computing remains unpredictable, creating a reasonable mental model becomes the primary task for building a hybrid system. A pragmatic mental model is also the fundament of some key topics such as recognition and synthesis of emotions. In this paper a Mental State Transition Network Model(2) is proposed to detect human emotions. By a series of psychological experiments, we present a new way to predict coming human's emotions depending on the various current emotional states under various stimuli. Besides, people in different genders and characters are taken into consideration in our investigation. According to the psychological experiments data derived from 200 questionnaires, a Mental State Transition Network Model for describing the transitions in distribution among the emotions and relationships between internal mental situations and external are concluded. Further more the coefficients of the mental transition network model were achieved. Comparing seven relative evaluating experiments, an average precision rate of 0.843 is achieved using a set of samples for the proposed model.

  18. UAV Trajectory Modeling Using Neural Networks

    Science.gov (United States)

    Xue, Min

    2017-01-01

    Massive small unmanned aerial vehicles are envisioned to operate in the near future. While there are lots of research problems need to be addressed before dense operations can happen, trajectory modeling remains as one of the keys to understand and develop policies, regulations, and requirements for safe and efficient unmanned aerial vehicle operations. The fidelity requirement of a small unmanned vehicle trajectory model is high because these vehicles are sensitive to winds due to their small size and low operational altitude. Both vehicle control systems and dynamic models are needed for trajectory modeling, which makes the modeling a great challenge, especially considering the fact that manufactures are not willing to share their control systems. This work proposed to use a neural network approach for modelling small unmanned vehicle's trajectory without knowing its control system and bypassing exhaustive efforts for aerodynamic parameter identification. As a proof of concept, instead of collecting data from flight tests, this work used the trajectory data generated by a mathematical vehicle model for training and testing the neural network. The results showed great promise because the trained neural network can predict 4D trajectories accurately, and prediction errors were less than 2:0 meters in both temporal and spatial dimensions.

  19. Modelling crime linkage with Bayesian networks

    NARCIS (Netherlands)

    de Zoete, J.; Sjerps, M.; Lagnado, D.; Fenton, N.

    2015-01-01

    When two or more crimes show specific similarities, such as a very distinct modus operandi, the probability that they were committed by the same offender becomes of interest. This probability depends on the degree of similarity and distinctiveness. We show how Bayesian networks can be used to model

  20. Modeling Network Transition Constraints with Hypergraphs

    DEFF Research Database (Denmark)

    Harrod, Steven

    2011-01-01

    values. A directed hypergraph formulation is derived to address railway network sequencing constraints, and an experimental problem sample solved to estimate the magnitude of objective inflation when interaction effects are ignored. The model is used to demonstrate the value of advance scheduling...

  1. A neural network model for texture discrimination.

    Science.gov (United States)

    Xing, J; Gerstein, G L

    1993-01-01

    A model of texture discrimination in visual cortex was built using a feedforward network with lateral interactions among relatively realistic spiking neural elements. The elements have various membrane currents, equilibrium potentials and time constants, with action potentials and synapses. The model is derived from the modified programs of MacGregor (1987). Gabor-like filters are applied to overlapping regions in the original image; the neural network with lateral excitatory and inhibitory interactions then compares and adjusts the Gabor amplitudes in order to produce the actual texture discrimination. Finally, a combination layer selects and groups various representations in the output of the network to form the final transformed image material. We show that both texture segmentation and detection of texture boundaries can be represented in the firing activity of such a network for a wide variety of synthetic to natural images. Performance details depend most strongly on the global balance of strengths of the excitatory and inhibitory lateral interconnections. The spatial distribution of lateral connective strengths has relatively little effect. Detailed temporal firing activities of single elements in the lateral connected network were examined under various stimulus conditions. Results show (as in area 17 of cortex) that a single element's response to image features local to its receptive field can be altered by changes in the global context.

  2. Logical Modeling and Dynamical Analysis of Cellular Networks.

    Science.gov (United States)

    Abou-Jaoudé, Wassim; Traynard, Pauline; Monteiro, Pedro T; Saez-Rodriguez, Julio; Helikar, Tomáš; Thieffry, Denis; Chaouiya, Claudine

    2016-01-01

    The logical (or logic) formalism is increasingly used to model regulatory and signaling networks. Complementing these applications, several groups contributed various methods and tools to support the definition and analysis of logical models. After an introduction to the logical modeling framework and to several of its variants, we review here a number of recent methodological advances to ease the analysis of large and intricate networks. In particular, we survey approaches to determine model attractors and their reachability properties, to assess the dynamical impact of variations of external signals, and to consistently reduce large models. To illustrate these developments, we further consider several published logical models for two important biological processes, namely the differentiation of T helper cells and the control of mammalian cell cycle.

  3. Distributed Bayesian Networks for User Modeling

    DEFF Research Database (Denmark)

    Tedesco, Roberto; Dolog, Peter; Nejdl, Wolfgang

    2006-01-01

    The World Wide Web is a popular platform for providing eLearning applications to a wide spectrum of users. However – as users differ in their preferences, background, requirements, and goals – applications should provide personalization mechanisms. In the Web context, user models used...... of Web-based eLearning platforms. The scenario we are tackling assumes learners who use several systems over time, which are able to create partial Bayesian Networks for user models based on the local system context. In particular, we focus on how to merge these partial user models. Our merge mechanism...... efficiently combines distributed learner models without the need to exchange internal structure of local Bayesian networks, nor local evidence between the involved platforms....

  4. Network traffic model using GIPP and GIBP

    Science.gov (United States)

    Lee, Yong Duk; Van de Liefvoort, Appie; Wallace, Victor L.

    1998-10-01

    In telecommunication networks, the correlated nature of teletraffic patterns can have significant impact on queuing measures such as queue length, blocking and delay. There is, however, not yet a good general analytical description which can easily incorporate the correlation effect of the traffic, while at the same time maintaining the ease of modeling. The authors have shown elsewhere, that the covariance structures of the generalized Interrupted Poisson Process (GIPP) and the generalized Interrupted Bernoulli Process (GIBP) have an invariance property which makes them reasonably general, yet algebraically manageable, models for representing correlated network traffic. The GIPP and GIBP have a surprisingly rich sets of parameters, yet these invariance properties enable us to easily incorporate the covariance function as well as the interarrival time distribution into the model to better matchobservations. In this paper, we show an application of GIPP and GIBP for matching an analytical model to observed or experimental data.

  5. Cellular Neural Network-Based Methods for Distributed Network Intrusion Detection

    Directory of Open Access Journals (Sweden)

    Kang Xie

    2015-01-01

    Full Text Available According to the problems of current distributed architecture intrusion detection systems (DIDS, a new online distributed intrusion detection model based on cellular neural network (CNN was proposed, in which discrete-time CNN (DTCNN was used as weak classifier in each local node and state-controlled CNN (SCCNN was used as global detection method, respectively. We further proposed a new method for design template parameters of SCCNN via solving Linear Matrix Inequality. Experimental results based on KDD CUP 99 dataset show its feasibility and effectiveness. Emerging evidence has indicated that this new approach is affordable to parallelism and analog very large scale integration (VLSI implementation which allows the distributed intrusion detection to be performed better.

  6. Slow update stochastic simulation algorithms for modeling complex biochemical networks.

    Science.gov (United States)

    Ghosh, Debraj; De, Rajat K

    2017-10-30

    The stochastic simulation algorithm (SSA) based modeling is a well recognized approach to predict the stochastic behavior of biological networks. The stochastic simulation of large complex biochemical networks is a challenge as it takes a large amount of time for simulation due to high update cost. In order to reduce the propensity update cost, we proposed two algorithms: slow update exact stochastic simulation algorithm (SUESSA) and slow update exact sorting stochastic simulation algorithm (SUESSSA). We applied cache-based linear search (CBLS) in these two algorithms for improving the search operation for finding reactions to be executed. Data structure used for incorporating CBLS is very simple and the cost of maintaining this during propensity update operation is very low. Hence, time taken during propensity updates, for simulating strongly coupled networks, is very fast; which leads to reduction of total simulation time. SUESSA and SUESSSA are not only restricted to elementary reactions, they support higher order reactions too. We used linear chain model and colloidal aggregation model to perform a comparative analysis of the performances of our methods with the existing algorithms. We also compared the performances of our methods with the existing ones, for large biochemical networks including B cell receptor and FcϵRI signaling networks. Copyright © 2017 Elsevier B.V. All rights reserved.

  7. Approximate Subgradient Methods for Lagrangian Relaxations on Networks

    Science.gov (United States)

    Mijangos, Eugenio

    Nonlinear network flow problems with linear/nonlinear side con- straints can be solved by means of Lagrangian relaxations. The dual problem is the maximization of a dual function whose value is estimated by minimizing approximately a Lagrangian function on the set defined by the network constraints. We study alternative stepsizes in the approximate subgradient methods to solve the dual problem. Some basic convergence results are put forward. Moreover, we compare the quality of the computed solutions and the efficiency of these methods.

  8. A Selection Method for Pipe Network Boosting Plans

    Science.gov (United States)

    Qiu, Weiwei; Li, Mengyao; Weng, Haoyang

    2017-12-01

    Based on the fuzzy mathematics theory, a multi-objective fuzzy comprehensive evaluation method used for selection of pipe network boosting plans was proposed by computing relative membership matrix and weight vector for indexes. The example results show that the multi-objective fuzzy comprehensive evaluation method combining the indexes and the fuzzy relationship between them is suited to realities and can provide reference for decision of pipe network boosting plan.

  9. Model Predictive Control of Sewer Networks

    DEFF Research Database (Denmark)

    Pedersen, Einar B.; Herbertsson, Hannes R.; Niemann, Henrik

    2016-01-01

    The developments in solutions for management of urban drainage are of vital importance, as the amount of sewer water from urban areas continues to increase due to the increase of the world’s population and the change in the climate conditions. How a sewer network is structured, monitored and cont...... benchmark model. Due to the inherent constraints the applied approach is based on Model Predictive Control....

  10. Modeling Multistandard Wireless Networks in OPNET

    DEFF Research Database (Denmark)

    Zakrzewska, Anna; Berger, Michael Stübert; Ruepp, Sarah Renée

    2011-01-01

    Future wireless communication is emerging towards one heterogeneous platform. In this new environment wireless access will be provided by multiple radio technologies that are cooperating and complementing one another. The paper investigates the possibilities of developing such a multistandard...... system using OPNET Modeler. A network model consisting of LTE interworking with WLAN and WiMAX is considered from the radio resource management perspective. In particular, implementing a joint packet scheduler across multiple systems is discussed more in detail....

  11. A multi-scale network method for two-phase flow in porous media

    Energy Technology Data Exchange (ETDEWEB)

    Khayrat, Karim, E-mail: khayratk@ifd.mavt.ethz.ch; Jenny, Patrick

    2017-08-01

    Pore-network models of porous media are useful in the study of pore-scale flow in porous media. In order to extract macroscopic properties from flow simulations in pore-networks, it is crucial the networks are large enough to be considered representative elementary volumes. However, existing two-phase network flow solvers are limited to relatively small domains. For this purpose, a multi-scale pore-network (MSPN) method, which takes into account flow-rate effects and can simulate larger domains compared to existing methods, was developed. In our solution algorithm, a large pore network is partitioned into several smaller sub-networks. The algorithm to advance the fluid interfaces within each subnetwork consists of three steps. First, a global pressure problem on the network is solved approximately using the multiscale finite volume (MSFV) method. Next, the fluxes across the subnetworks are computed. Lastly, using fluxes as boundary conditions, a dynamic two-phase flow solver is used to advance the solution in time. Simulation results of drainage scenarios at different capillary numbers and unfavourable viscosity ratios are presented and used to validate the MSPN method against solutions obtained by an existing dynamic network flow solver.

  12. The Method of Leader’s Overthrow in Networks

    OpenAIRE

    Belik, Ivan; Jörnsten, Kurt

    2016-01-01

    Methods for leader’s detection and overthrow in networks are useful tools for decision-making in many real-life cases, such as criminal networks with hidden patterns or money laundering networks. In the given research, we represent the algorithms that detect and overthrow the most influential node to the weaker positions following the greedy method in terms of structural modifications. We employed the concept of Shapley value from the area of cooperative games to measure a node’s leadership a...

  13. Spatial Models and Networks of Living Systems

    DEFF Research Database (Denmark)

    Juul, Jeppe Søgaard

    When studying the dynamics of living systems, insight can often be gained by developing a mathematical model that can predict future behaviour of the system or help classify system characteristics. However, in living cells, organisms, and especially groups of interacting individuals, a large number....... Such systems are known to be stabilized by spatial structure. Finally, I analyse data from a large mobile phone network and show that people who are topologically close in the network have similar communication patterns. This main part of the thesis is based on six different articles, which I have co...

  14. Capacitive MEMS accelerometer wide range modeling using artificial neural network

    OpenAIRE

    A. Baharodimehr; A. Abolfazl Suratgar; H. Sadeghi

    2009-01-01

    This paper presents a nonlinear model for a capacitive microelectromechanical accelerometer (MEMA). System parameters ofthe accelerometer are developed using the effect of cubic term of the folded‐flexure spring. To solve this equation, we use theFEA method. The neural network (NN) uses the Levenberg‐Marquardt (LM) method for training the system to have a moreaccurate response. The designed NN can identify and predict the displacement of the movable mass of accelerometer. Thesimulation result...

  15. Capacitive MEMS accelerometer wide range modeling using artificial neural network

    Directory of Open Access Journals (Sweden)

    A. Baharodimehr

    2009-08-01

    Full Text Available This paper presents a nonlinear model for a capacitive microelectromechanical accelerometer (MEMA. System parameters ofthe accelerometer are developed using the effect of cubic term of the folded‐flexure spring. To solve this equation, we use theFEA method. The neural network (NN uses the Levenberg‐Marquardt (LM method for training the system to have a moreaccurate response. The designed NN can identify and predict the displacement of the movable mass of accelerometer. Thesimulation results are very promising.

  16. Method for gesture based modeling

    DEFF Research Database (Denmark)

    2006-01-01

    A computer program based method is described for creating models using gestures. On an input device, such as an electronic whiteboard, a user draws a gesture which is recognized by a computer program and interpreted relative to a predetermined meta-model. Based on the interpretation, an algorithm...... is assigned to the gesture drawn by the user. The executed algorithm may, for example, consist in creating a new model element, modifying an existing model element, or deleting an existing model element....

  17. An improved Bayesian network method for reconstructing gene regulatory network based on candidate auto selection.

    Science.gov (United States)

    Xing, Linlin; Guo, Maozu; Liu, Xiaoyan; Wang, Chunyu; Wang, Lei; Zhang, Yin

    2017-11-17

    The reconstruction of gene regulatory network (GRN) from gene expression data can discover regulatory relationships among genes and gain deep insights into the complicated regulation mechanism of life. However, it is still a great challenge in systems biology and bioinformatics. During the past years, numerous computational approaches have been developed for this goal, and Bayesian network (BN) methods draw most of attention among these methods because of its inherent probability characteristics. However, Bayesian network methods are time consuming and cannot handle large-scale networks due to their high computational complexity, while the mutual information-based methods are highly effective but directionless and have a high false-positive rate. To solve these problems, we propose a Candidate Auto Selection algorithm (CAS) based on mutual information and breakpoint detection to restrict the search space in order to accelerate the learning process of Bayesian network. First, the proposed CAS algorithm automatically selects the neighbor candidates of each node before searching the best structure of GRN. Then based on CAS algorithm, we propose a globally optimal greedy search method (CAS + G), which focuses on finding the highest rated network structure, and a local learning method (CAS + L), which focuses on faster learning the structure with little loss of quality. Results show that the proposed CAS algorithm can effectively reduce the search space of Bayesian networks through identifying the neighbor candidates of each node. In our experiments, the CAS + G method outperforms the state-of-the-art method on simulation data for inferring GRNs, and the CAS + L method is significantly faster than the state-of-the-art method with little loss of accuracy. Hence, the CAS based methods effectively decrease the computational complexity of Bayesian network and are more suitable for GRN inference.

  18. Mathematical models of electrical network systems theory and applications : an introduction

    CERN Document Server

    Kłos, Andrzej

    2017-01-01

    This book is for all those who are looking for a non-conventional mathematical model of electrical network systems. It presents a modern approach using linear algebra and derives various commonly unknown quantities and interrelations of network analysis. It also explores some applications of algebraic network model of and solves some examples of previously unsolved network problems in planning and operation of network systems. Complex mathematical aspects are illustrated and described in a way that is understandable for non-mathematicians. Discussing interesting concepts and practically useful methods of network analysis, it is a valuable resource for lecturers, students, engineers and research workers. .

  19. A study of structural properties of gene network graphs for mathematical modeling of integrated mosaic gene networks.

    Science.gov (United States)

    Petrovskaya, Olga V; Petrovskiy, Evgeny D; Lavrik, Inna N; Ivanisenko, Vladimir A

    2017-04-01

    Gene network modeling is one of the widely used approaches in systems biology. It allows for the study of complex genetic systems function, including so-called mosaic gene networks, which consist of functionally interacting subnetworks. We conducted a study of a mosaic gene networks modeling method based on integration of models of gene subnetworks by linear control functionals. An automatic modeling of 10,000 synthetic mosaic gene regulatory networks was carried out using computer experiments on gene knockdowns/knockouts. Structural analysis of graphs of generated mosaic gene regulatory networks has revealed that the most important factor for building accurate integrated mathematical models, among those analyzed in the study, is data on expression of genes corresponding to the vertices with high properties of centrality.

  20. Neural Network Model of memory retrieval

    Directory of Open Access Journals (Sweden)

    Stefano eRecanatesi

    2015-12-01

    Full Text Available Human memory can store large amount of information. Nevertheless, recalling is often achallenging task. In a classical free recall paradigm, where participants are asked to repeat abriefly presented list of words, people make mistakes for lists as short as 5 words. We present amodel for memory retrieval based on a Hopfield neural network where transition between itemsare determined by similarities in their long-term memory representations. Meanfield analysis ofthe model reveals stable states of the network corresponding (1 to single memory representationsand (2 intersection between memory representations. We show that oscillating feedback inhibitionin the presence of noise induces transitions between these states triggering the retrieval ofdifferent memories. The network dynamics qualitatively predicts the distribution of time intervalsrequired to recall new memory items observed in experiments. It shows that items having largernumber of neurons in their representation are statistically easier to recall and reveals possiblebottlenecks in our ability of retrieving memories. Overall, we propose a neural network model ofinformation retrieval broadly compatible with experimental observations and is consistent with ourrecent graphical model (Romani et al., 2013.

  1. Protocol independent transmission method in software defined optical network

    Science.gov (United States)

    Liu, Yuze; Li, Hui; Hou, Yanfang; Qiu, Yajun; Ji, Yuefeng

    2016-10-01

    With the development of big data and cloud computing technology, the traditional software-defined network is facing new challenges (e.i., ubiquitous accessibility, higher bandwidth, more flexible management and greater security). Using a proprietary protocol or encoding format is a way to improve information security. However, the flow, which carried by proprietary protocol or code, cannot go through the traditional IP network. In addition, ultra- high-definition video transmission service once again become a hot spot. Traditionally, in the IP network, the Serial Digital Interface (SDI) signal must be compressed. This approach offers additional advantages but also bring some disadvantages such as signal degradation and high latency. To some extent, HD-SDI can also be regard as a proprietary protocol, which need transparent transmission such as optical channel. However, traditional optical networks cannot support flexible traffics . In response to aforementioned challenges for future network, one immediate solution would be to use NFV technology to abstract the network infrastructure and provide an all-optical switching topology graph for the SDN control plane. This paper proposes a new service-based software defined optical network architecture, including an infrastructure layer, a virtualization layer, a service abstract layer and an application layer. We then dwell on the corresponding service providing method in order to implement the protocol-independent transport. Finally, we experimentally evaluate that proposed service providing method can be applied to transmit the HD-SDI signal in the software-defined optical network.

  2. Efficient parameter search for qualitative models of regulatory networks using symbolic model checking.

    Science.gov (United States)

    Batt, Gregory; Page, Michel; Cantone, Irene; Goessler, Gregor; Monteiro, Pedro; de Jong, Hidde

    2010-09-15

    Investigating the relation between the structure and behavior of complex biological networks often involves posing the question if the hypothesized structure of a regulatory network is consistent with the observed behavior, or if a proposed structure can generate a desired behavior. The above questions can be cast into a parameter search problem for qualitative models of regulatory networks. We develop a method based on symbolic model checking that avoids enumerating all possible parametrizations, and show that this method performs well on real biological problems, using the IRMA synthetic network and benchmark datasets. We test the consistency between IRMA and time-series expression profiles, and search for parameter modifications that would make the external control of the system behavior more robust. GNA and the IRMA model are available at http://ibis.inrialpes.fr/.

  3. Adaptation Methods in Mobile Communication Networks

    National Research Council Canada - National Science Library

    Vladimir Wieser

    2003-01-01

    Adaptation methods are the main tool for transmission rate maximization through the mobile channel and today the great attention is directed to them not only in theoretical domain but in standardization process, too...

  4. Adaptation Methods in Mobile Communication Networks

    National Research Council Canada - National Science Library

    Vladimir Wieser

    2003-01-01

      Adaptation methods are the main tool for transmission rate maximization through the mobile channel and today the great attention is directed to them not only in theoretical domain but in standardization process, too...

  5. A Bayesian Network View on Nested Effects Models

    Directory of Open Access Journals (Sweden)

    Fröhlich Holger

    2009-01-01

    Full Text Available Nested effects models (NEMs are a class of probabilistic models that were designed to reconstruct a hidden signalling structure from a large set of observable effects caused by active interventions into the signalling pathway. We give a more flexible formulation of NEMs in the language of Bayesian networks. Our framework constitutes a natural generalization of the original NEM model, since it explicitly states the assumptions that are tacitly underlying the original version. Our approach gives rise to new learning methods for NEMs, which have been implemented in the /Bioconductor package nem. We validate these methods in a simulation study and apply them to a synthetic lethality dataset in yeast.

  6. Dynamical modeling and analysis of large cellular regulatory networks

    Science.gov (United States)

    Bérenguier, D.; Chaouiya, C.; Monteiro, P. T.; Naldi, A.; Remy, E.; Thieffry, D.; Tichit, L.

    2013-06-01

    The dynamical analysis of large biological regulatory networks requires the development of scalable methods for mathematical modeling. Following the approach initially introduced by Thomas, we formalize the interactions between the components of a network in terms of discrete variables, functions, and parameters. Model simulations result in directed graphs, called state transition graphs. We are particularly interested in reachability properties and asymptotic behaviors, which correspond to terminal strongly connected components (or "attractors") in the state transition graph. A well-known problem is the exponential increase of the size of state transition graphs with the number of network components, in particular when using the biologically realistic asynchronous updating assumption. To address this problem, we have developed several complementary methods enabling the analysis of the behavior of large and complex logical models: (i) the definition of transition priority classes to simplify the dynamics; (ii) a model reduction method preserving essential dynamical properties, (iii) a novel algorithm to compact state transition graphs and directly generate compressed representations, emphasizing relevant transient and asymptotic dynamical properties. The power of an approach combining these different methods is demonstrated by applying them to a recent multilevel logical model for the network controlling CD4+ T helper cell response to antigen presentation and to a dozen cytokines. This model accounts for the differentiation of canonical Th1 and Th2 lymphocytes, as well as of inflammatory Th17 and regulatory T cells, along with many hybrid subtypes. All these methods have been implemented into the software GINsim, which enables the definition, the analysis, and the simulation of logical regulatory graphs.

  7. Dynamical modeling and analysis of large cellular regulatory networks.

    Science.gov (United States)

    Bérenguier, D; Chaouiya, C; Monteiro, P T; Naldi, A; Remy, E; Thieffry, D; Tichit, L

    2013-06-01

    The dynamical analysis of large biological regulatory networks requires the development of scalable methods for mathematical modeling. Following the approach initially introduced by Thomas, we formalize the interactions between the components of a network in terms of discrete variables, functions, and parameters. Model simulations result in directed graphs, called state transition graphs. We are particularly interested in reachability properties and asymptotic behaviors, which correspond to terminal strongly connected components (or "attractors") in the state transition graph. A well-known problem is the exponential increase of the size of state transition graphs with the number of network components, in particular when using the biologically realistic asynchronous updating assumption. To address this problem, we have developed several complementary methods enabling the analysis of the behavior of large and complex logical models: (i) the definition of transition priority classes to simplify the dynamics; (ii) a model reduction method preserving essential dynamical properties, (iii) a novel algorithm to compact state transition graphs and directly generate compressed representations, emphasizing relevant transient and asymptotic dynamical properties. The power of an approach combining these different methods is demonstrated by applying them to a recent multilevel logical model for the network controlling CD4+ T helper cell response to antigen presentation and to a dozen cytokines. This model accounts for the differentiation of canonical Th1 and Th2 lymphocytes, as well as of inflammatory Th17 and regulatory T cells, along with many hybrid subtypes. All these methods have been implemented into the software GINsim, which enables the definition, the analysis, and the simulation of logical regulatory graphs.

  8. Methods for inferring health-related social networks among coworkers from online communication patterns.

    Directory of Open Access Journals (Sweden)

    Luke J Matthews

    Full Text Available Studies of social networks, mapped using self-reported contacts, have demonstrated the strong influence of social connections on the propensity for individuals to adopt or maintain healthy behaviors and on their likelihood to adopt health risks such as obesity. Social network analysis may prove useful for businesses and organizations that wish to improve the health of their populations by identifying key network positions. Health traits have been shown to correlate across friendship ties, but evaluating network effects in large coworker populations presents the challenge of obtaining sufficiently comprehensive network data. The purpose of this study was to evaluate methods for using online communication data to generate comprehensive network maps that reproduce the health-associated properties of an offline social network. In this study, we examined three techniques for inferring social relationships from email traffic data in an employee population using thresholds based on: (1 the absolute number of emails exchanged, (2 logistic regression probability of an offline relationship, and (3 the highest ranked email exchange partners. As a model of the offline social network in the same population, a network map was created using social ties reported in a survey instrument. The email networks were evaluated based on the proportion of survey ties captured, comparisons of common network metrics, and autocorrelation of body mass index (BMI across social ties. Results demonstrated that logistic regression predicted the greatest proportion of offline social ties, thresholding on number of emails exchanged produced the best match to offline network metrics, and ranked email partners demonstrated the strongest autocorrelation of BMI. Since each method had unique strengths, researchers should choose a method based on the aspects of offline behavior of interest. Ranked email partners may be particularly useful for purposes related to health traits in a

  9. Methods for Inferring Health-Related Social Networks among Coworkers from Online Communication Patterns

    Science.gov (United States)

    Matthews, Luke J.; DeWan, Peter; Rula, Elizabeth Y.

    2013-01-01

    Studies of social networks, mapped using self-reported contacts, have demonstrated the strong influence of social connections on the propensity for individuals to adopt or maintain healthy behaviors and on their likelihood to adopt health risks such as obesity. Social network analysis may prove useful for businesses and organizations that wish to improve the health of their populations by identifying key network positions. Health traits have been shown to correlate across friendship ties, but evaluating network effects in large coworker populations presents the challenge of obtaining sufficiently comprehensive network data. The purpose of this study was to evaluate methods for using online communication data to generate comprehensive network maps that reproduce the health-associated properties of an offline social network. In this study, we examined three techniques for inferring social relationships from email traffic data in an employee population using thresholds based on: (1) the absolute number of emails exchanged, (2) logistic regression probability of an offline relationship, and (3) the highest ranked email exchange partners. As a model of the offline social network in the same population, a network map was created using social ties reported in a survey instrument. The email networks were evaluated based on the proportion of survey ties captured, comparisons of common network metrics, and autocorrelation of body mass index (BMI) across social ties. Results demonstrated that logistic regression predicted the greatest proportion of offline social ties, thresholding on number of emails exchanged produced the best match to offline network metrics, and ranked email partners demonstrated the strongest autocorrelation of BMI. Since each method had unique strengths, researchers should choose a method based on the aspects of offline behavior of interest. Ranked email partners may be particularly useful for purposes related to health traits in a social network. PMID

  10. Methods for inferring health-related social networks among coworkers from online communication patterns.

    Science.gov (United States)

    Matthews, Luke J; DeWan, Peter; Rula, Elizabeth Y

    2013-01-01

    Studies of social networks, mapped using self-reported contacts, have demonstrated the strong influence of social connections on the propensity for individuals to adopt or maintain healthy behaviors and on their likelihood to adopt health risks such as obesity. Social network analysis may prove useful for businesses and organizations that wish to improve the health of their populations by identifying key network positions. Health traits have been shown to correlate across friendship ties, but evaluating network effects in large coworker populations presents the challenge of obtaining sufficiently comprehensive network data. The purpose of this study was to evaluate methods for using online communication data to generate comprehensive network maps that reproduce the health-associated properties of an offline social network. In this study, we examined three techniques for inferring social relationships from email traffic data in an employee population using thresholds based on: (1) the absolute number of emails exchanged, (2) logistic regression probability of an offline relationship, and (3) the highest ranked email exchange partners. As a model of the offline social network in the same population, a network map was created using social ties reported in a survey instrument. The email networks were evaluated based on the proportion of survey ties captured, comparisons of common network metrics, and autocorrelation of body mass index (BMI) across social ties. Results demonstrated that logistic regression predicted the greatest proportion of offline social ties, thresholding on number of emails exchanged produced the best match to offline network metrics, and ranked email partners demonstrated the strongest autocorrelation of BMI. Since each method had unique strengths, researchers should choose a method based on the aspects of offline behavior of interest. Ranked email partners may be particularly useful for purposes related to health traits in a social network.

  11. Networking among young global health researchers through an intensive training approach: a mixed methods exploratory study.

    Science.gov (United States)

    Lenters, Lindsey M; Cole, Donald C; Godoy-Ruiz, Paula

    2014-01-25

    Networks are increasingly regarded as essential in health research aimed at influencing practice and policies. Less research has focused on the role networking can play in researchers' careers and its broader impacts on capacity strengthening in health research. We used the Canadian Coalition for Global Health Research (CCGHR) annual Summer Institute for New Global Health Researchers (SIs) as an opportunity to explore networking among new global health researchers. A mixed-methods exploratory study was conducted among SI alumni and facilitators who had participated in at least one SI between 2004 and 2010. Alumni and facilitators completed an online short questionnaire, and a subset participated in an in-depth interview. Thematic analysis of the qualitative data was triangulated with quantitative results and CCGHR reports on SIs. Synthesis occurred through the development of a process model relevant to networking through the SIs. Through networking at the SIs, participants experienced decreased isolation and strengthened working relationships. Participants accessed new knowledge, opportunities, and resources through networking during the SI. Post-SI, participants reported ongoing contact and collaboration, although most participants desired more opportunities for interaction. They made suggestions for structural supports to networking among new global health researchers. Networking at the SI contributed positively to opportunities for individuals, and contributed to the formation of a network of global health researchers. Intentional inclusion of networking in health research capacity strengthening initiatives, with supportive resources and infrastructure could create dynamic, sustainable networks accessible to global health researchers around the world.

  12. Producing a Set of Models for the Iron Homeostasis Network

    Directory of Open Access Journals (Sweden)

    Nicolas Mobilia

    2013-08-01

    Full Text Available This paper presents a method for modeling biological systems which combines formal techniques on intervals, numerical simulations and satisfaction of Signal Temporal Logic (STL formulas. The main modeling challenge addressed by this approach is the large uncertainty in the values of the parameters due to the experimental difficulties of getting accurate biological data. This method considers intervals for each parameter and a formal description of the expected behavior of the model. In a first step, it produces reduced intervals of possible parameter values. Then by performing a systematic search in these intervals, it defines sets of parameter values used in the next step. This procedure aims at finding a sub-space where the model robustly behaves as expected. We apply this method to the modeling of the cellular iron homeostasis network in erythroid progenitors. The produced model describes explicitly the regulation mechanism which acts at the translational level.

  13. A Hybrid Reliable Heuristic Mapping Method Based on Survivable Virtual Networks for Network Virtualization

    Directory of Open Access Journals (Sweden)

    Qiang Zhu

    2015-01-01

    Full Text Available The reliable mapping of virtual networks is one of the hot issues in network virtualization researches. Unlike the traditional protection mechanisms based on redundancy and recovery mechanisms, we take the solution of the survivable virtual topology routing problem for reference to ensure that the rest of the mapped virtual networks keeps connected under a single node failure condition in the substrate network, which guarantees the completeness of the virtual network and continuity of services. In order to reduce the cost of the substrate network, a hybrid reliable heuristic mapping method based on survivable virtual networks (Hybrid-RHM-SVN is proposed. In Hybrid-RHM-SVN, we formulate the reliable mapping problem as an integer linear program. Firstly, we calculate the primary-cut set of the virtual network subgraph where the failed node has been removed. Then, we use the ant colony optimization algorithm to achieve the approximate optimal mapping. The links in primary-cut set should select a substrate path that does not pass through the substrate node corresponding to the virtual node that has been removed first. The simulation results show that the acceptance rate of virtual networks, the average revenue of mapping, and the recovery rate of virtual networks are increased compared with the existing reliable mapping algorithms, respectively.

  14. HIV lipodystrophy case definition using artificial neural network modelling

    DEFF Research Database (Denmark)

    Ioannidis, John P A; Trikalinos, Thomas A; Law, Matthew

    2003-01-01

    OBJECTIVE: A case definition of HIV lipodystrophy has recently been developed from a combination of clinical, metabolic and imaging/body composition variables using logistic regression methods. We aimed to evaluate whether artificial neural networks could improve the diagnostic accuracy. METHODS......: The database of the case-control Lipodystrophy Case Definition Study was split into 504 subjects (265 with and 239 without lipodystrophy) used for training and 284 independent subjects (152 with and 132 without lipodystrophy) used for validation. Back-propagation neural networks with one or two middle layers...... were trained and validated. Results were compared against logistic regression models using the same information. RESULTS: Neural networks using clinical variables only (41 items) achieved consistently superior performance than logistic regression in terms of specificity, overall accuracy and area under...

  15. Fracture network modeling of a Hot Dry Rock geothermal reservoir

    Energy Technology Data Exchange (ETDEWEB)

    Robinson, B.A.

    1988-01-01

    Fluid flow and tracer transport in a fractured Hot Dry Rock (HDR) geothermal reservoir are modeled using fracture network modeling techniques. The steady state pressure and flow fields are solved for a two-dimensional, interconnected network of fractures with no-flow outer boundaries and constant-pressure source and sink points to simulate wellbore-fracture intersections. The tracer response is simulated by particle tracking, which follows the progress of a representative sample of individual tracer molecules traveling through the network. Solute retardation due to matrix diffusion and sorption is handled easily with these particle tracking methods. Matrix diffusion is shown to have an important effect in many fractured geothermal reservoirs, including those in crystalline formations of relatively low matrix porosity. Pressure drop and tracer behavior are matched for a fractured HDR reservoir tested at Fenton Hill, NM.

  16. Lipid Processing Technology: Building a Multilevel Modeling Network

    DEFF Research Database (Denmark)

    Díaz Tovar, Carlos Axel; Mustaffa, Azizul Azri; Mukkerikar, Amol

    2011-01-01

    in design and analysis of unit operations; iv) the information and models developed are used as building blocks in the development of methods and tools for computer-aided synthesis and design of process flowsheets (CAFD). The applicability of this methodology is highlighted in each level of modeling through......The aim of this work is to present the development of a computer aided multilevel modeling network for the systematic design and analysis of processes employing lipid technologies. This is achieved by decomposing the problem into four levels of modeling: i) pure component property modeling...... and a lipid-database of collected experimental data from industry and generated data from validated predictive property models, as well as modeling tools for fast adoption-analysis of property prediction models; ii) modeling of phase behavior of relevant lipid mixtures using the UNIFACCI model, development...

  17. Building a multilevel modeling network for lipid processing systems

    DEFF Research Database (Denmark)

    Mustaffa, Azizul Azri; Díaz Tovar, Carlos Axel; Hukkerikar, Amol

    2011-01-01

    data collected from existing process plants, and application of validated models in design and analysis of unit operations; iv) the information and models developed are used as building blocks in the development of methods and tools for computer-aided synthesis and design of process flowsheets (CAFD......The aim of this work is to present the development of a computer aided multilevel modeling network for the systematic design and analysis of processes employing lipid technologies. This is achieved by decomposing the problem into four levels of modeling: i) pure component property modeling...... and a lipid-database of collected experimental data from industry and generated data from validated predictive property models, as well as modeling tools for fast adoption-analysis of property prediction models; ii) modeling of phase behavior of relevant lipid mixtures using the UNIFAC-CI model, development...

  18. Neural network model for thermal inactivation of Salmonella Typhimurium to elimination in ground chicken: Acquisition of data by whole sample enrichment, miniature most-probable-number method

    Science.gov (United States)

    Predictive models are valuable tools for assessing food safety. Existing thermal inactivation models for Salmonella and ground chicken do not provide predictions above 71 degrees C, which is below the recommended final cooked temperature of 73.9 degrees C. They also do not predict when all Salmone...

  19. A Multiscale Model for the Brain Vascular Network

    Science.gov (United States)

    Grinberg, Leopold; Karniadakis, George

    2007-11-01

    Simulations of blood flow in arterial networks requires physiologicaly correct boundary condition at inlets and outlets. Outflow boundary conditions for the Macrovascular Network (MaN) can be imposed by solving a closure problem based on modeling the rest of the flow in ten millions arterioles (Mesovascular Network, MeN) and one billion capillaries (Microvascular Network, MiN). Numerical solution of the three-level MaN-MeN-MiN integration can be performed on the future generation of petaflop supercomputers. An alternative approach for the MaN simulation is to impose the clinically measured flow rates at outlets. We have developed a new method to incorporate such measurements at multiple outlets, it is based on imposing Neumann boundary condition for the velocity and time-dependent resistance boundary conditions for the pressure. The convergence of numerical solution for the outlet flow-rates is achieved immediately. The computational complexity of the method is comparable to the widely used constant pressure boundary condition. Our approach is verified on a model of Brain Vascular Network with tens of arterial segments and outlets.

  20. Performance modeling, loss networks, and statistical multiplexing

    CERN Document Server

    Mazumdar, Ravi

    2009-01-01

    This monograph presents a concise mathematical approach for modeling and analyzing the performance of communication networks with the aim of understanding the phenomenon of statistical multiplexing. The novelty of the monograph is the fresh approach and insights provided by a sample-path methodology for queueing models that highlights the important ideas of Palm distributions associated with traffic models and their role in performance measures. Also presented are recent ideas of large buffer, and many sources asymptotics that play an important role in understanding statistical multiplexing. I

  1. A Hierarchical Modeling for Reactive Power Optimization With Joint Transmission and Distribution Networks by Curve Fitting

    DEFF Research Database (Denmark)

    Ding, Tao; Li, Cheng; Huang, Can

    2017-01-01

    function of the slave model for the master model, which reflects the impacts of each slave model. Second, the transmission and distribution networks are decoupled at feeder buses, and all the distribution networks are coordinated by the master reactive power optimization model to achieve the global......In order to solve the reactive power optimization with joint transmission and distribution networks, a hierarchical modeling method is proposed in this paper. It allows the reactive power optimization of transmission and distribution networks to be performed separately, leading to a master......–slave structure and improves traditional centralized modeling methods by alleviating the big data problem in a control center. Specifically, the transmission-distribution-network coordination issue of the hierarchical modeling method is investigated. First, a curve-fitting approach is developed to provide a cost...

  2. An algebraic topological method for multimodal brain networks comparison

    Directory of Open Access Journals (Sweden)

    Tiago eSimas

    2015-07-01

    Full Text Available Understanding brain connectivity is one of the most important issues in neuroscience. Nonetheless, connectivity data can reflect either functional relationships of brain activities or anatomical connections between brain areas. Although both representations should be related, this relationship is not straightforward. We have devised a powerful method that allows different operations between networks that share the same set of nodes, by embedding them in a common metric space, enforcing transitivity to the graph topology. Here, we apply this method to construct an aggregated network from a set of functional graphs, each one from a different subject. Once this aggregated functional network is constructed, we use again our method to compare it with the structural connectivity to identify particular brain regions that differ in both modalities (anatomical and functional. Remarkably, these brain regions include functional areas that form part of the classical resting state networks. We conclude that our method -based on the comparison of the aggregated functional network- reveals some emerging features that could not be observed when the comparison is performed with the classical averaged functional network.

  3. Artificial Neural Network Model for Predicting Compressive

    Directory of Open Access Journals (Sweden)

    Salim T. Yousif

    2013-05-01

    Full Text Available   Compressive strength of concrete is a commonly used criterion in evaluating concrete. Although testing of the compressive strength of concrete specimens is done routinely, it is performed on the 28th day after concrete placement. Therefore, strength estimation of concrete at early time is highly desirable. This study presents the effort in applying neural network-based system identification techniques to predict the compressive strength of concrete based on concrete mix proportions, maximum aggregate size (MAS, and slump of fresh concrete. Back-propagation neural networks model is successively developed, trained, and tested using actual data sets of concrete mix proportions gathered from literature.    The test of the model by un-used data within the range of input parameters shows that the maximum absolute error for model is about 20% and 88% of the output results has absolute errors less than 10%. The parametric study shows that water/cement ratio (w/c is the most significant factor  affecting the output of the model.     The results showed that neural networks has strong potential as a feasible tool for predicting compressive strength of concrete.

  4. The research of elevator health diagnosis method based on Bayesian network

    Science.gov (United States)

    Liu, Chang; Zhang, Xinzheng; Liu, Xindong; Chen, Can

    2017-08-01

    Elevator, as a complex mechanical system, is hard to determine the factors that affect components’ status. In accordance with this special characteristic, the Elevator Fault Diagnosis Model is proposed based on Bayesian Network in this paper. The method uses different samples of the elevator and adopts Monte Carlo inference mechanism for Bayesian Network Model structure and parameter learning. Eventually, an elevator fault diagnosis model based on Bayesian network is established, which accords with the theory of elevator operation. In this paper, we use different kinds of fault data samples to test the method. Experimental results demonstrate the higher accuracy of our method. This paper provides a good assistant method by means of Fault prediction and Health diagnosis of elevator system at present.

  5. UAV Trajectory Modeling Using Neural Networks

    Science.gov (United States)

    Xue, Min

    2017-01-01

    Large amount of small Unmanned Aerial Vehicles (sUAVs) are projected to operate in the near future. Potential sUAV applications include, but not limited to, search and rescue, inspection and surveillance, aerial photography and video, precision agriculture, and parcel delivery. sUAVs are expected to operate in the uncontrolled Class G airspace, which is at or below 500 feet above ground level (AGL), where many static and dynamic constraints exist, such as ground properties and terrains, restricted areas, various winds, manned helicopters, and conflict avoidance among sUAVs. How to enable safe, efficient, and massive sUAV operations at the low altitude airspace remains a great challenge. NASA's Unmanned aircraft system Traffic Management (UTM) research initiative works on establishing infrastructure and developing policies, requirement, and rules to enable safe and efficient sUAVs' operations. To achieve this goal, it is important to gain insights of future UTM traffic operations through simulations, where the accurate trajectory model plays an extremely important role. On the other hand, like what happens in current aviation development, trajectory modeling should also serve as the foundation for any advanced concepts and tools in UTM. Accurate models of sUAV dynamics and control systems are very important considering the requirement of the meter level precision in UTM operations. The vehicle dynamics are relatively easy to derive and model, however, vehicle control systems remain unknown as they are usually kept by manufactures as a part of intellectual properties. That brings challenges to trajectory modeling for sUAVs. How to model the vehicle's trajectories with unknown control system? This work proposes to use a neural network to model a vehicle's trajectory. The neural network is first trained to learn the vehicle's responses at numerous conditions. Once being fully trained, given current vehicle states, winds, and desired future trajectory, the neural

  6. Communication devices for network-hopping communications and methods of network-hopping communications

    Science.gov (United States)

    Buttles, John W

    2013-04-23

    Wireless communication devices include a software-defined radio coupled to processing circuitry. The system controller is configured to execute computer programming code. Storage media is coupled to the system controller and includes computer programming code configured to cause the system controller to configure and reconfigure the software-defined radio to operate on each of a plurality of communication networks according to a selected sequence. Methods for communicating with a wireless device and methods of wireless network-hopping are also disclosed.

  7. Predicting the parameters of energy installations with laser ignition: Neural network models

    Directory of Open Access Journals (Sweden)

    Alexey A. Pastukhov

    2015-06-01

    Full Text Available This article considers the possibility of using artificial neural networks for predicting the parameters of the model energy installation with laser ignition. The main stages of creating a prognostic model based on an artificial neural network have been presented. Input data were analyzed by principal component method. The synthesized neural network was designed to predict the parameter value of the model in question. The artificial neural network was trained by a back-propagation algorithm. The efficiency of the artificial neural networks and their applicability to predicting parameter values of various rocket engine elements were demonstrated.

  8. An Efficient Synchronization Method for Wireless Networks

    Science.gov (United States)

    2013-06-01

    group-wise synchronization which is more e cient than rsync, is possible. This paper describes Dandelion , an algorithm that builds on the ideas of the...which is more efficient than rsync, is possible. This paper describes Dandelion , an algorithm that builds on the ideas of the rsync algorithm to...methods analyzed in this paper are compared using this metric. To meet this goal, this paper defines an epidemic-like algorithm called Dandelion that is

  9. Systems biology of plant molecular networks: from networks to models

    NARCIS (Netherlands)

    Valentim, F.L.

    2015-01-01

    Developmental processes are controlled by regulatory networks (GRNs), which are tightly coordinated networks of transcription factors (TFs) that activate and repress gene expression within a spatial and temporal context. In Arabidopsis thaliana, the key components and network structures of the GRNs

  10. Fast, moment-based estimation methods for delay network tomography

    Energy Technology Data Exchange (ETDEWEB)

    Lawrence, Earl Christophre [Los Alamos National Laboratory; Michailidis, George [U OF MICHIGAN; Nair, Vijayan N [U OF MICHIGAN

    2008-01-01

    Consider the delay network tomography problem where the goal is to estimate distributions of delays at the link-level using data on end-to-end delays. These measurements are obtained using probes that are injected at nodes located on the periphery of the network and sent to other nodes also located on the periphery. Much of the previous literature deals with discrete delay distributions by discretizing the data into small bins. This paper considers more general models with a focus on computationally efficient estimation. The moment-based schemes presented here are designed to function well for larger networks and for applications like monitoring that require speedy solutions.

  11. A BHR Composite Network-Based Visualization Method for Deformation Risk Level of Underground Space.

    Directory of Open Access Journals (Sweden)

    Wei Zheng

    Full Text Available This study proposes a visualization processing method for the deformation risk level of underground space. The proposed method is based on a BP-Hopfield-RGB (BHR composite network. Complex environmental factors are integrated in the BP neural network. Dynamic monitoring data are then automatically classified in the Hopfield network. The deformation risk level is combined with the RGB color space model and is displayed visually in real time, after which experiments are conducted with the use of an ultrasonic omnidirectional sensor device for structural deformation monitoring. The proposed method is also compared with some typical methods using a benchmark dataset. Results show that the BHR composite network visualizes the deformation monitoring process in real time and can dynamically indicate dangerous zones.

  12. An Entropy-Based Network Anomaly Detection Method

    Directory of Open Access Journals (Sweden)

    Przemysław Bereziński

    2015-04-01

    Full Text Available Data mining is an interdisciplinary subfield of computer science involving methods at the intersection of artificial intelligence, machine learning and statistics. One of the data mining tasks is anomaly detection which is the analysis of large quantities of data to identify items, events or observations which do not conform to an expected pattern. Anomaly detection is applicable in a variety of domains, e.g., fraud detection, fault detection, system health monitoring but this article focuses on application of anomaly detection in the field of network intrusion detection.The main goal of the article is to prove that an entropy-based approach is suitable to detect modern botnet-like malware based on anomalous patterns in network. This aim is achieved by realization of the following points: (i preparation of a concept of original entropy-based network anomaly detection method, (ii implementation of the method, (iii preparation of original dataset, (iv evaluation of the method.

  13. Decomposition method for analysis of closed queuing networks

    Directory of Open Access Journals (Sweden)

    Yu. G. Nesterov

    2014-01-01

    Full Text Available This article deals with the method to estimate the average residence time in nodes of closed queuing networks with priorities and a wide range of conservative disciplines to be served. The method is based on a decomposition of entire closed queuing network into a set of simple basic queuing systems such as M|GI|m|N for each node. The unknown average residence times in the network nodes are interrelated through a system of nonlinear equations. The fact that there is a solution of this system has been proved. An iterative procedure based on Newton-Kantorovich method is proposed for finding the solution of such system. This procedure provides fast convergence to solution. Today possibilities of proposed method are limited by known analytical solutions for simple basic queuing systems of M|GI|m|N type.

  14. Advances in dynamic network modeling in complex transportation systems

    CERN Document Server

    Ukkusuri, Satish V

    2013-01-01

    This book focuses on the latest in dynamic network modeling, including route guidance and traffic control in transportation systems and other complex infrastructure networks. Covers dynamic traffic assignment, flow modeling, mobile sensor deployment and more.

  15. A NEURAL OSCILLATOR-NETWORK MODEL OF TEMPORAL PATTERN GENERATION

    NARCIS (Netherlands)

    Schomaker, Lambert

    Most contemporary neural network models deal with essentially static, perceptual problems of classification and transformation. Models such as multi-layer feedforward perceptrons generally do not incorporate time as an essential dimension, whereas biological neural networks are inherently temporal

  16. Stochastic modelling and control of communication networks

    OpenAIRE

    Zuraniewski, P.W.

    2011-01-01

    The unprecedented growth of the Information Technologies sector observed within the past years creates an excellent opportunity to conduct new, exciting and interdisciplinary research. Increasing complexity of the communication networks calls for incorporating rigorously developed and reliable methods for traffic control and management. Mathematics may offer extremely valuable tools to achieve these goals but transforming an engineering problem into the mathematical one requires a good unders...

  17. Many Body Methods from Chemistry to Physics: Novel Computational Techniques for Materials-Specific Modelling: A Computational Materials Science and Chemistry Network

    Energy Technology Data Exchange (ETDEWEB)

    Millis, Andrew [Columbia Univ., New York, NY (United States). Dept. of Physics

    2016-11-17

    Understanding the behavior of interacting electrons in molecules and solids so that one can predict new superconductors, catalysts, light harvesters, energy and battery materials and optimize existing ones is the ``quantum many-body problem’’. This is one of the scientific grand challenges of the 21st century. A complete solution to the problem has been proven to be exponentially hard, meaning that straightforward numerical approaches fail. New insights and new methods are needed to provide accurate yet feasible approximate solutions. This CMSCN project brought together chemists and physicists to combine insights from the two disciplines to develop innovative new approaches. Outcomes included the Density Matrix Embedding method, a new, computationally inexpensive and extremely accurate approach that may enable first principles treatment of superconducting and magnetic properties of strongly correlated materials, new techniques for existing methods including an Adaptively Truncated Hilbert Space approach that will vastly expand the capabilities of the dynamical mean field method, a self-energy embedding theory and a new memory-function based approach to the calculations of the behavior of driven systems. The methods developed under this project are now being applied to improve our understanding of superconductivity, to calculate novel topological properties of materials and to characterize and improve the properties of nanoscale devices.

  18. Using structural equation modeling for network meta-analysis.

    Science.gov (United States)

    Tu, Yu-Kang; Wu, Yun-Chun

    2017-07-14

    Network meta-analysis overcomes the limitations of traditional pair-wise meta-analysis by incorporating all available evidence into a general statistical framework for simultaneous comparisons of several treatments. Currently, network meta-analyses are undertaken either within the Bayesian hierarchical linear models or frequentist generalized linear mixed models. Structural equation modeling (SEM) is a statistical method originally developed for modeling causal relations among observed and latent variables. As random effect is explicitly modeled as a latent variable in SEM, it is very flexible for analysts to specify complex random effect structure and to make linear and nonlinear constraints on parameters. The aim of this article is to show how to undertake a network meta-analysis within the statistical framework of SEM. We used an example dataset to demonstrate the standard fixed and random effect network meta-analysis models can be easily implemented in SEM. It contains results of 26 studies that directly compared three treatment groups A, B and C for prevention of first bleeding in patients with liver cirrhosis. We also showed that a new approach to network meta-analysis based on the technique of unrestricted weighted least squares (UWLS) method can also be undertaken using SEM. For both the fixed and random effect network meta-analysis, SEM yielded similar coefficients and confidence intervals to those reported in the previous literature. The point estimates of two UWLS models were identical to those in the fixed effect model but the confidence intervals were greater. This is consistent with results from the traditional pairwise meta-analyses. Comparing to UWLS model with common variance adjusted factor, UWLS model with unique variance adjusted factor has greater confidence intervals when the heterogeneity was larger in the pairwise comparison. The UWLS model with unique variance adjusted factor reflects the difference in heterogeneity within each comparison

  19. On the shape of posterior densities and credible sets in instrumental variable regression models with reduced rank: an application of flexible sampling methods using neural networks

    NARCIS (Netherlands)

    L.F. Hoogerheide (Lennart); J.F. Kaashoek (Johan); H.K. van Dijk (Herman)

    2005-01-01

    textabstractLikelihoods and posteriors of instrumental variable regression models with strong endogeneity and/or weak instruments may exhibit rather non-elliptical contours in the parameter space. This may seriously affect inference based on Bayesian credible sets. When approximating such contours

  20. Model of Opinion Spreading in Social Networks

    CERN Document Server

    Kanovsky, Igor

    2011-01-01

    We proposed a new model, which capture the main difference between information and opinion spreading. In information spreading additional exposure to certain information has a small effect. Contrary, when an actor is exposed to 2 opinioned actors the probability to adopt the opinion is significant higher than in the case of contact with one such actor (called by J. Kleinberg "the 0-1-2 effect"). In each time step if an actor does not have an opinion, we randomly choose 2 his network neighbors. If one of them has an opinion, the actor adopts opinion with some low probability, if two - with a higher probability. Opinion spreading was simulated on different real world social networks and similar random scale-free networks. The results show that small world structure has a crucial impact on tipping point time. The "0-1-2" effect causes a significant difference between ability of the actors to start opinion spreading. Actor is an influencer according to his topological position in the network.

  1. A Newly Developed Method for Computing Reliability Measures in a Water Supply Network

    Directory of Open Access Journals (Sweden)

    Jacek Malinowski

    2016-01-01

    Full Text Available A reliability model of a water supply network has beens examined. Its main features are: a topology that can be decomposed by the so-called state factorization into a (relativelysmall number of derivative networks, each having a series-parallel structure (1, binary-state components (either operative or failed with given flow capacities (2, a multi-state character of the whole network and its sub-networks - a network state is defined as the maximal flow between a source (sources and a sink (sinks (3, all capacities (component, network, and sub-network have integer values (4. As the network operates, its state changes due to component failures, repairs, and replacements. A newly developed method of computing the inter-state transition intensities has been presented. It is based on the so-called state factorization and series-parallel aggregation. The analysis of these intensities shows that the failure-repair process of the considered system is an asymptotically homogenous Markov process. It is also demonstrated how certain reliability parameters useful for the network maintenance planning can be determined on the basis of the asymptotic intensities. For better understanding of the presented method, an illustrative example is given. (original abstract

  2. ADOxx Modelling Method Conceptualization Environment

    Directory of Open Access Journals (Sweden)

    Nesat Efendioglu

    2017-04-01

    Full Text Available The importance of Modelling Methods Engineering is equally rising with the importance of domain specific languages (DSL and individual modelling approaches. In order to capture the relevant semantic primitives for a particular domain, it is necessary to involve both, (a domain experts, who identify relevant concepts as well as (b method engineers who compose a valid and applicable modelling approach. This process consists of a conceptual design of formal or semi-formal of modelling method as well as a reliable, migratable, maintainable and user friendly software development of the resulting modelling tool. Modelling Method Engineering cycle is often under-estimated as both the conceptual architecture requires formal verification and the tool implementation requires practical usability, hence we propose a guideline and corresponding tools to support actors with different background along this complex engineering process. Based on practical experience in business, more than twenty research projects within the EU frame programmes and a number of bilateral research initiatives, this paper introduces the phases, corresponding a toolbox and lessons learned with the aim to support the engineering of a modelling method. ”The proposed approach is illustrated and validated within use cases from three different EU-funded research projects in the fields of (1 Industry 4.0, (2 e-learning and (3 cloud computing. The paper discusses the approach, the evaluation results and derived outlooks.

  3. Application of Artificial Neural Networks in the Heart Electrical Axis Position Conclusion Modeling

    Science.gov (United States)

    Bakanovskaya, L. N.

    2016-08-01

    The article touches upon building of a heart electrical axis position conclusion model using an artificial neural network. The input signals of the neural network are the values of deflections Q, R and S; and the output signal is the value of the heart electrical axis position. Training of the network is carried out by the error propagation method. The test results allow concluding that the created neural network makes a conclusion with a high degree of accuracy.

  4. Mathematical model for spreading dynamics of social network worms

    Science.gov (United States)

    Sun, Xin; Liu, Yan-Heng; Li, Bin; Li, Jin; Han, Jia-Wei; Liu, Xue-Jie

    2012-04-01

    In this paper, a mathematical model for social network worm spreading is presented from the viewpoint of social engineering. This model consists of two submodels. Firstly, a human behavior model based on game theory is suggested for modeling and predicting the expected behaviors of a network user encountering malicious messages. The game situation models the actions of a user under the condition that the system may be infected at the time of opening a malicious message. Secondly, a social network accessing model is proposed to characterize the dynamics of network users, by which the number of online susceptible users can be determined at each time step. Several simulation experiments are carried out on artificial social networks. The results show that (1) the proposed mathematical model can well describe the spreading dynamics of social network worms; (2) weighted network topology greatly affects the spread of worms; (3) worms spread even faster on hybrid social networks.

  5. Application of network methods for understanding evolutionary dynamics in discrete habitats.

    Science.gov (United States)

    Greenbaum, Gili; Fefferman, Nina H

    2017-06-01

    In populations occupying discrete habitat patches, gene flow between habitat patches may form an intricate population structure. In such structures, the evolutionary dynamics resulting from interaction of gene-flow patterns with other evolutionary forces may be exceedingly complex. Several models describing gene flow between discrete habitat patches have been presented in the population-genetics literature; however, these models have usually addressed relatively simple settings of habitable patches and have stopped short of providing general methodologies for addressing nontrivial gene-flow patterns. In the last decades, network theory - a branch of discrete mathematics concerned with complex interactions between discrete elements - has been applied to address several problems in population genetics by modelling gene flow between habitat patches using networks. Here, we present the idea and concepts of modelling complex gene flows in discrete habitats using networks. Our goal is to raise awareness to existing network theory applications in molecular ecology studies, as well as to outline the current and potential contribution of network methods to the understanding of evolutionary dynamics in discrete habitats. We review the main branches of network theory that have been, or that we believe potentially could be, applied to population genetics and molecular ecology research. We address applications to theoretical modelling and to empirical population-genetic studies, and we highlight future directions for extending the integration of network science with molecular ecology. © 2017 John Wiley & Sons Ltd.

  6. Modeling regulatory networks with weight matrices

    DEFF Research Database (Denmark)

    Weaver, D.C.; Workman, Christopher; Stormo, Gary D.

    1999-01-01

    Systematic gene expression analyses provide comprehensive information about the transcriptional responseto different environmental and developmental conditions. With enough gene expression data points,computational biologists may eventually generate predictive computer models of transcription...... regulation.Such models will require computational methodologies consistent with the behavior of known biologicalsystems that remain tractable. We represent regulatory relationships between genes as linear coefficients orweights, with the "net" regulation influence on a gene's expression being...... the mathematical summation of theindependent regulatory inputs. Test regulatory networks generated with this approach display stable andcyclically stable gene expression levels, consistent with known biological systems. We include variables tomodel the effect of environmental conditions on transcription regulation...

  7. Artificial Neural Network Modeling of an Inverse Fluidized Bed ...

    African Journals Online (AJOL)

    The application of neural networks to model a laboratory scale inverse fluidized bed reactor has been studied. A Radial Basis Function neural network has been successfully employed for the modeling of the inverse fluidized bed reactor. In the proposed model, the trained neural network represents the kinetics of biological ...

  8. Modeling social influence through network autocorrelation : constructing the weight matrix

    NARCIS (Netherlands)

    Leenders, Roger Th. A. J.

    Many physical and social phenomena are embedded within networks of interdependencies, the so-called 'context' of these phenomena. In network analysis, this type of process is typically modeled as a network autocorrelation model. Parameter estimates and inferences based on autocorrelation models,

  9. Influence of rainfall observation network on model calibration and application

    Directory of Open Access Journals (Sweden)

    A. Bárdossy

    2008-01-01

    Full Text Available The objective in this study is to investigate the influence of the spatial resolution of the rainfall input on the model calibration and application. The analysis is carried out by varying the distribution of the raingauge network. A meso-scale catchment located in southwest Germany has been selected for this study. First, the semi-distributed HBV model is calibrated with the precipitation interpolated from the available observed rainfall of the different raingauge networks. An automatic calibration method based on the combinatorial optimization algorithm simulated annealing is applied. The performance of the hydrological model is analyzed as a function of the raingauge density. Secondly, the calibrated model is validated using interpolated precipitation from the same raingauge density used for the calibration as well as interpolated precipitation based on networks of reduced and increased raingauge density. Lastly, the effect of missing rainfall data is investigated by using a multiple linear regression approach for filling in the missing measurements. The model, calibrated with the complete set of observed data, is then run in the validation period using the above described precipitation field. The simulated hydrographs obtained in the above described three sets of experiments are analyzed through the comparisons of the computed Nash-Sutcliffe coefficient and several goodness-of-fit indexes. The results show that the model using different raingauge networks might need re-calibration of the model parameters, specifically model calibrated on relatively sparse precipitation information might perform well on dense precipitation information while model calibrated on dense precipitation information fails on sparse precipitation information. Also, the model calibrated with the complete set of observed precipitation and run with incomplete observed data associated with the data estimated using multiple linear regressions, at the locations treated as

  10. Specification and Estimation of Network Formation and Network Interaction Models with the Exponential Probability Distribution

    OpenAIRE

    Hsieh, Chih-Sheng; Lee, Lung fei

    2017-01-01

    In this paper, we model network formation and network interactions under a unified framework. The key feature of our model is to allow individuals to respond to incentives stemming from interaction benefits on certain activities when they choose friends (network links), while capturing homophily in terms of unobserved characteristic variables in network formation and activities. There are two advantages of this modeling approach: first, one can evaluate whether incentives from certain interac...

  11. Quantum-Like Bayesian Networks for Modeling Decision Making

    Directory of Open Access Journals (Sweden)

    Catarina eMoreira

    2016-01-01

    Full Text Available In this work, we explore an alternative quantum structure to perform quantum probabilistic inferences to accommodate the paradoxical findings of the Sure Thing Principle. We propose a Quantum-Like Bayesian Network, which consists in replacing classical probabilities by quantum probability amplitudes. However, since this approach suffers from the problem of exponential growth of quantum parameters, we also propose a similarity heuristic that automatically fits quantum parameters through vector similarities. This makes the proposed model general and predictive in contrast to the current state of the art models, which cannot be generalized for more complex decision scenarios and that only provide an explanatory nature for the observed paradoxes. In the end, the model that we propose consists in a nonparametric method for estimating inference effects from a statistical point of view. It is a statistical model that is simpler than the previous quantum dynamic and quantum-like models proposed in the literature. We tested the proposed network with several empirical data from the literature, mainly from the Prisoner's Dilemma game and the Two Stage Gambling game. The results obtained show that the proposed quantum Bayesian Network is a general method that can accommodate violations of the laws of classical probability theory and make accurate predictions regarding human decision-making in these scenarios.

  12. Comparison of surrogate models with different methods in ...

    Indian Academy of Sciences (India)

    Surrogate modelling is an effective tool for reducing computational burden of simulation optimization. In this article, polynomial regression (PR), radial basis function artificial neural network (RBFANN), and kriging methods were compared for building surrogate models of a multiphase flow simulation model in a simplified ...

  13. THE USE OF NEURAL NETWORK TECHNOLOGY TO MODEL SWIMMING PERFORMANCE

    Directory of Open Access Journals (Sweden)

    António José Silva

    2007-03-01

    Full Text Available The aims of the present study were: to identify the factors which are able to explain the performance in the 200 meters individual medley and 400 meters front crawl events in young swimmers, to model the performance in those events using non-linear mathematic methods through artificial neural networks (multi-layer perceptrons and to assess the neural network models precision to predict the performance. A sample of 138 young swimmers (65 males and 73 females of national level was submitted to a test battery comprising four different domains: kinanthropometric evaluation, dry land functional evaluation (strength and flexibility, swimming functional evaluation (hydrodynamics, hydrostatic and bioenergetics characteristics and swimming technique evaluation. To establish a profile of the young swimmer non-linear combinations between preponderant variables for each gender and swim performance in the 200 meters medley and 400 meters font crawl events were developed. For this purpose a feed forward neural network was used (Multilayer Perceptron with three neurons in a single hidden layer. The prognosis precision of the model (error lower than 0.8% between true and estimated performances is supported by recent evidence. Therefore, we consider that the neural network tool can be a good approach in the resolution of complex problems such as performance modeling and the talent identification in swimming and, possibly, in a wide variety of sports

  14. Decomposition method for zonal resource allocation problems in telecommunication networks

    Science.gov (United States)

    Konnov, I. V.; Kashuba, A. Yu

    2016-11-01

    We consider problems of optimal resource allocation in telecommunication networks. We first give an optimization formulation for the case where the network manager aims to distribute some homogeneous resource (bandwidth) among users of one region with quadratic charge and fee functions and present simple and efficient solution methods. Next, we consider a more general problem for a provider of a wireless communication network divided into zones (clusters) with common capacity constraints. We obtain a convex quadratic optimization problem involving capacity and balance constraints. By using the dual Lagrangian method with respect to the capacity constraint, we suggest to reduce the initial problem to a single-dimensional optimization problem, but calculation of the cost function value leads to independent solution of zonal problems, which coincide with the above single region problem. Some results of computational experiments confirm the applicability of the new methods.

  15. Exploring function prediction in protein interaction networks via clustering methods.

    Science.gov (United States)

    Trivodaliev, Kire; Bogojeska, Aleksandra; Kocarev, Ljupco

    2014-01-01

    Complex networks have recently become the focus of research in many fields. Their structure reveals crucial information for the nodes, how they connect and share information. In our work we analyze protein interaction networks as complex networks for their functional modular structure and later use that information in the functional annotation of proteins within the network. We propose several graph representations for the protein interaction network, each having different level of complexity and inclusion of the annotation information within the graph. We aim to explore what the benefits and the drawbacks of these proposed graphs are, when they are used in the function prediction process via clustering methods. For making this cluster based prediction, we adopt well established approaches for cluster detection in complex networks using most recent representative algorithms that have been proven as efficient in the task at hand. The experiments are performed using a purified and reliable Saccharomyces cerevisiae protein interaction network, which is then used to generate the different graph representations. Each of the graph representations is later analysed in combination with each of the clustering algorithms, which have been possibly modified and implemented to fit the specific graph. We evaluate results in regards of biological validity and function prediction performance. Our results indicate that the novel ways of presenting the complex graph improve the prediction process, although the computational complexity should be taken into account when deciding on a particular approach.

  16. Exploring function prediction in protein interaction networks via clustering methods.

    Directory of Open Access Journals (Sweden)

    Kire Trivodaliev

    Full Text Available Complex networks have recently become the focus of research in many fields. Their structure reveals crucial information for the nodes, how they connect and share information. In our work we analyze protein interaction networks as complex networks for their functional modular structure and later use that information in the functional annotation of proteins within the network. We propose several graph representations for the protein interaction network, each having different level of complexity and inclusion of the annotation information within the graph. We aim to explore what the benefits and the drawbacks of these proposed graphs are, when they are used in the function prediction process via clustering methods. For making this cluster based prediction, we adopt well established approaches for cluster detection in complex networks using most recent representative algorithms that have been proven as efficient in the task at hand. The experiments are performed using a purified and reliable Saccharomyces cerevisiae protein interaction network, which is then used to generate the different graph representations. Each of the graph representations is later analysed in combination with each of the clustering algorithms, which have been possibly modified and implemented to fit the specific graph. We evaluate results in regards of biological validity and function prediction performance. Our results indicate that the novel ways of presenting the complex graph improve the prediction process, although the computational complexity should be taken into account when deciding on a particular approach.

  17. Algebraic model checking for Boolean gene regulatory networks.

    Science.gov (United States)

    Tran, Quoc-Nam

    2011-01-01

    We present a computational method in which modular and Groebner bases (GB) computation in Boolean rings are used for solving problems in Boolean gene regulatory networks (BN). In contrast to other known algebraic approaches, the degree of intermediate polynomials during the calculation of Groebner bases using our method will never grow resulting in a significant improvement in running time and memory space consumption. We also show how calculation in temporal logic for model checking can be done by means of our direct and efficient Groebner basis computation in Boolean rings. We present our experimental results in finding attractors and control strategies of Boolean networks to illustrate our theoretical arguments. The results are promising. Our algebraic approach is more efficient than the state-of-the-art model checker NuSMV on BNs. More importantly, our approach finds all solutions for the BN problems.

  18. Challenges on Probabilistic Modeling for Evolving Networks

    OpenAIRE

    Ding, Jianguo; Bouvry, Pascal

    2013-01-01

    With the emerging of new networks, such as wireless sensor networks, vehicle networks, P2P networks, cloud computing, mobile Internet, or social networks, the network dynamics and complexity expands from system design, hardware, software, protocols, structures, integration, evolution, application, even to business goals. Thus the dynamics and uncertainty are unavoidable characteristics, which come from the regular network evolution and unexpected hardware defects, unavoidable software errors,...

  19. Steady-State Analysis of Genetic Regulatory Networks Modelled by Probabilistic Boolean Networks

    Directory of Open Access Journals (Sweden)

    Wei Zhang

    2006-04-01

    Full Text Available Probabilistic Boolean networks (PBNs have recently been introduced as a promising class of models of genetic regulatory networks. The dynamic behaviour of PBNs can be analysed in the context of Markov chains. A key goal is the determination of the steady-state (long-run behaviour of a PBN by analysing the corresponding Markov chain. This allows one to compute the long-term influence of a gene on another gene or determine the long-term joint probabilistic behaviour of a few selected genes. Because matrix-based methods quickly become prohibitive for large sizes of networks, we propose the use of Monte Carlo methods. However, the rate of convergence to the stationary distribution becomes a central issue. We discuss several approaches for determining the number of iterations necessary to achieve convergence of the Markov chain corresponding to a PBN. Using a recently introduced method based on the theory of two-state Markov chains, we illustrate the approach on a sub-network designed from human glioma gene expression data and determine the joint steadystate probabilities for several groups of genes.

  20. Translating biochemical network models between different kinetic formats.

    Science.gov (United States)

    Hadlich, Frieder; Noack, Stephan; Wiechert, Wolfgang

    2009-03-01

    Mechanistic biochemical network models describe the dynamics of intracellular metabolite pools in terms of substance concentrations, stoichiometry and reaction kinetics. Data from stimulus response experiments are currently the most informative source for in-vivo parameter estimation in such models. However, only a part of the parameters of classical enzyme kinetic models can usually be estimated from typical stimulus response data. For this reason, several alternative kinetic formats using different "languages" (e.g. linear, power laws, linlog, generic and convenience) have been proposed to reduce the model complexity. The present contribution takes a rigorous "multi-lingual" approach to data evaluation by translating biochemical network models from one kinetic format into another. For this purpose, a new high-performance algorithm has been developed and tested. Starting with a given model, it replaces as many kinetic terms as possible by alternative expressions while still reproducing the experimental data. Application of the algorithm to a published model for Escherichia coli's sugar metabolism demonstrates the power of the new method. It is shown that model translation is a powerful tool to investigate the information content of stimulus response data and the predictive power of models. Moreover, the local and global approximation capabilities of the models are elucidated and some pitfalls of traditional single model approaches to data evaluation are revealed.

  1. Dynamic Trust Models between Users over Social Networks

    Science.gov (United States)

    2016-03-30

    and a set of user activities from Epinions, which is a social media site of product reviews and consumer reports. In Epinions, a user u can create a...mediators, and 4) to analyze activities among users based on a non- negative matrix factorization (NMF) method. By using the datasets of item review scores...analyzed evolution of trust networks in social media sites from a perspective of mediators. To this end, we proposed two stochastic models that

  2. Simulation of heart rate variability model in a network

    Science.gov (United States)

    Cascaval, Radu C.; D'Apice, Ciro; D'Arienzo, Maria Pia

    2017-07-01

    We consider a 1-D model for the simulation of the blood flow in the cardiovascular system. As inflow condition we consider a model for the aortic valve. The opening and closing of the valve is dynamically determined by the pressure difference between the left ventricular and aortic pressures. At the outflow we impose a peripheral resistance model. To approximate the solution we use a numerical scheme based on the discontinuous Galerkin method. We also considering a variation in heart rate and terminal reflection coefficient due to monitoring of the pressure in the network.

  3. Aeronautical telecommunications network advances, challenges, and modeling

    CERN Document Server

    Musa, Sarhan M

    2015-01-01

    Addresses the Challenges of Modern-Day Air Traffic Air traffic control (ATC) directs aircraft in the sky and on the ground to safety, while the Aeronautical Telecommunications Network (ATN) comprises all systems and phases that assist in aircraft departure and landing. The Aeronautical Telecommunications Network: Advances, Challenges, and Modeling focuses on the development of ATN and examines the role of the various systems that link aircraft with the ground. The book places special emphasis on ATC-introducing the modern ATC system from the perspective of the user and the developer-and provides a thorough understanding of the operating mechanism of the ATC system. It discusses the evolution of ATC, explaining its structure and how it works; includes design examples; and describes all subsystems of the ATC system. In addition, the book covers relevant tools, techniques, protocols, and architectures in ATN, including MIPv6, air traffic control (ATC), security of air traffic management (ATM), very-high-frequenc...

  4. Neural Network Program Package for Prosody Modeling

    Directory of Open Access Journals (Sweden)

    J. Santarius

    2004-04-01

    Full Text Available This contribution describes the programme for one part of theautomatic Text-to-Speech (TTS synthesis. Some experiments (for example[14] documented the considerable improvement of the naturalness ofsynthetic speech, but this approach requires completing the inputfeature values by hand. This completing takes a lot of time for bigfiles. We need to improve the prosody by other approaches which useonly automatically classified features (input parameters. Theartificial neural network (ANN approach is used for the modeling ofprosody parameters. The program package contains all modules necessaryfor the text and speech signal pre-processing, neural network training,sensitivity analysis, result processing and a module for the creationof the input data protocol for Czech speech synthesizer ARTIC [1].

  5. A graph clustering method for community detection in complex networks

    Science.gov (United States)

    Zhou, HongFang; Li, Jin; Li, JunHuai; Zhang, FaCun; Cui, YingAn

    2017-03-01

    Information mining from complex networks by identifying communities is an important problem in a number of research fields, including the social sciences, biology, physics and medicine. First, two concepts are introduced, Attracting Degree and Recommending Degree. Second, a graph clustering method, referred to as AR-Cluster, is presented for detecting community structures in complex networks. Third, a novel collaborative similarity measure is adopted to calculate node similarities. In the AR-Cluster method, vertices are grouped together based on calculated similarity under a K-Medoids framework. Extensive experimental results on two real datasets show the effectiveness of AR-Cluster.

  6. Gene Expression Network Reconstruction by LEP Method Using Microarray Data

    Directory of Open Access Journals (Sweden)

    Na You

    2012-01-01

    Full Text Available Gene expression network reconstruction using microarray data is widely studied aiming to investigate the behavior of a gene cluster simultaneously. Under the Gaussian assumption, the conditional dependence between genes in the network is fully described by the partial correlation coefficient matrix. Due to the high dimensionality and sparsity, we utilize the LEP method to estimate it in this paper. Compared to the existing methods, the LEP reaches the highest PPV with the sensitivity controlled at the satisfactory level. A set of gene expression data from the HapMap project is analyzed for illustration.

  7. Neural network connectivity and response latency modelled by stochastic processes

    DEFF Research Database (Denmark)

    Tamborrino, Massimiliano

    is connected to thousands of other neurons. The rst question is: how to model neural networks through stochastic processes? A multivariate Ornstein-Uhlenbeck process, obtained as a diffusion approximation of a jump process, is the proposed answer. Obviously, dependencies between neurons imply dependencies...... between their spike times. Therefore, the second question is: how to detect neural network connectivity from simultaneously recorded spike trains? Answering this question corresponds to investigate the joint distribution of sequences of rst passage times. A non-parametric method based on copulas...... generation of pikes. When a stimulus is applied to the network, the spontaneous rings may prevail and hamper detection of the effects of the stimulus. Therefore, the spontaneous rings cannot be ignored and the response latency has to be detected on top of a background signal. Everything becomes more dicult...

  8. Neural network versus classical time series forecasting models

    Science.gov (United States)

    Nor, Maria Elena; Safuan, Hamizah Mohd; Shab, Noorzehan Fazahiyah Md; Asrul, Mohd; Abdullah, Affendi; Mohamad, Nurul Asmaa Izzati; Lee, Muhammad Hisyam

    2017-05-01

    Artificial neural network (ANN) has advantage in time series forecasting as it has potential to solve complex forecasting problems. This is because ANN is data driven approach which able to be trained to map past values of a time series. In this study the forecast performance between neural network and classical time series forecasting method namely seasonal autoregressive integrated moving average models was being compared by utilizing gold price data. Moreover, the effect of different data preprocessing on the forecast performance of neural network being examined. The forecast accuracy was evaluated using mean absolute deviation, root mean square error and mean absolute percentage error. It was found that ANN produced the most accurate forecast when Box-Cox transformation was used as data preprocessing.

  9. Mechanics, Models and Methods in Civil Engineering

    CERN Document Server

    Maceri, Franco

    2012-01-01

    „Mechanics, Models and Methods in Civil Engineering” collects leading papers dealing with actual Civil Engineering problems. The approach is in the line of the Italian-French school and therefore deeply couples mechanics and mathematics creating new predictive theories, enhancing clarity in understanding, and improving effectiveness in applications. The authors of the contributions collected here belong to the Lagrange Laboratory, an European Research Network active since many years. This book will be of a major interest for the reader aware of modern Civil Engineering.

  10. Large-Scale Recurrent Neural Network Based Modelling of Gene Regulatory Network Using Cuckoo Search-Flower Pollination Algorithm.

    Science.gov (United States)

    Mandal, Sudip; Khan, Abhinandan; Saha, Goutam; Pal, Rajat K

    2016-01-01

    The accurate prediction of genetic networks using computational tools is one of the greatest challenges in the postgenomic era. Recurrent Neural Network is one of the most popular but simple approaches to model the network dynamics from time-series microarray data. To date, it has been successfully applied to computationally derive small-scale artificial and real-world genetic networks with high accuracy. However, they underperformed for large-scale genetic networks. Here, a new methodology has been proposed where a hybrid Cuckoo Search-Flower Pollination Algorithm has been implemented with Recurrent Neural Network. Cuckoo Search is used to search the best combination of regulators. Moreover, Flower Pollination Algorithm is applied to optimize the model parameters of the Recurrent Neural Network formalism. Initially, the proposed method is tested on a benchmark large-scale artificial network for both noiseless and noisy data. The results obtained show that the proposed methodology is capable of increasing the inference of correct regulations and decreasing false regulations to a high degree. Secondly, the proposed methodology has been validated against the real-world dataset of the DNA SOS repair network of Escherichia coli. However, the proposed method sacrifices computational time complexity in both cases due to the hybrid optimization process.

  11. Large-Scale Recurrent Neural Network Based Modelling of Gene Regulatory Network Using Cuckoo Search-Flower Pollination Algorithm

    Directory of Open Access Journals (Sweden)

    Sudip Mandal

    2016-01-01

    Full Text Available The accurate prediction of genetic networks using computational tools is one of the greatest challenges in the postgenomic era. Recurrent Neural Network is one of the most popular but simple approaches to model the network dynamics from time-series microarray data. To date, it has been successfully applied to computationally derive small-scale artificial and real-world genetic networks with high accuracy. However, they underperformed for large-scale genetic networks. Here, a new methodology has been proposed where a hybrid Cuckoo Search-Flower Pollination Algorithm has been implemented with Recurrent Neural Network. Cuckoo Search is used to search the best combination of regulators. Moreover, Flower Pollination Algorithm is applied to optimize the model parameters of the Recurrent Neural Network formalism. Initially, the proposed method is tested on a benchmark large-scale artificial network for both noiseless and noisy data. The results obtained show that the proposed methodology is capable of increasing the inference of correct regulations and decreasing false regulations to a high degree. Secondly, the proposed methodology has been validated against the real-world dataset of the DNA SOS repair network of Escherichia coli. However, the proposed method sacrifices computational time complexity in both cases due to the hybrid optimization process.

  12. Towards an evolutionary model of transcription networks.

    Directory of Open Access Journals (Sweden)

    Dan Xie

    2011-06-01

    Full Text Available DNA evolution models made invaluable contributions to comparative genomics, although it seemed formidable to include non-genomic features into these models. In order to build an evolutionary model of transcription networks (TNs, we had to forfeit the substitution model used in DNA evolution and to start from modeling the evolution of the regulatory relationships. We present a quantitative evolutionary model of TNs, subjecting the phylogenetic distance and the evolutionary changes of cis-regulatory sequence, gene expression and network structure to one probabilistic framework. Using the genome sequences and gene expression data from multiple species, this model can predict regulatory relationships between a transcription factor (TF and its target genes in all species, and thus identify TN re-wiring events. Applying this model to analyze the pre-implantation development of three mammalian species, we identified the conserved and re-wired components of the TNs downstream to a set of TFs including Oct4, Gata3/4/6, cMyc and nMyc. Evolutionary events on the DNA sequence that led to turnover of TF binding sites were identified, including a birth of an Oct4 binding site by a 2nt deletion. In contrast to recent reports of large interspecies differences of TF binding sites and gene expression patterns, the interspecies difference in TF-target relationship is much smaller. The data showed increasing conservation levels from genomic sequences to TF-DNA interaction, gene expression, TN, and finally to morphology, suggesting that evolutionary changes are larger at molecular levels and smaller at functional levels. The data also showed that evolutionarily older TFs are more likely to have conserved target genes, whereas younger TFs tend to have larger re-wiring rates.

  13. Contributions and challenges for network models in cognitive neuroscience.

    Science.gov (United States)

    Sporns, Olaf

    2014-05-01

    The confluence of new approaches in recording patterns of brain connectivity and quantitative analytic tools from network science has opened new avenues toward understanding the organization and function of brain networks. Descriptive network models of brain structural and functional connectivity have made several important contributions; for example, in the mapping of putative network hubs and network communities. Building on the importance of anatomical and functional interactions, network models have provided insight into the basic structures and mechanisms that enable integrative neural processes. Network models have also been instrumental in understanding the role of structural brain networks in generating spatially and temporally organized brain activity. Despite these contributions, network models are subject to limitations in methodology and interpretation, and they face many challenges as brain connectivity data sets continue to increase in detail and complexity.

  14. Statistical modelling of neural networks in {gamma}-spectrometry applications

    Energy Technology Data Exchange (ETDEWEB)

    Vigneron, V.; Martinez, J.M. [CEA Centre d`Etudes de Saclay, 91 - Gif-sur-Yvette (France). Dept. de Mecanique et de Technologie; Morel, J.; Lepy, M.C. [CEA Centre d`Etudes de Saclay, 91 - Gif-sur-Yvette (France). Dept. des Applications et de la Metrologie des Rayonnements Ionisants

    1995-12-31

    Layered Neural Networks, which are a class of models based on neural computation, are applied to the measurement of uranium enrichment, i.e. the isotope ratio {sup 235} U/({sup 235} U + {sup 236} U + {sup 238} U). The usual method consider a limited number of {Gamma}-ray and X-ray peaks, and require previously calibrated instrumentation for each sample. But, in practice, the source-detector ensemble geometry conditions are critically different, thus a means of improving the above convention methods is to reduce the region of interest: this is possible by focusing on the K{sub {alpha}} X region where the three elementary components are present. Real data are used to study the performance of neural networks. Training is done with a Maximum Likelihood method to measure uranium {sup 235} U and {sup 238} U quantities in infinitely thick samples. (authors). 18 refs., 6 figs., 3 tabs.

  15. Modeling of regional warehouse network generation

    Directory of Open Access Journals (Sweden)

    Popov Pavel Vladimirovich

    2016-08-01

    Full Text Available One of the factors that has a significant impact on the socio-economic development of the Russian Federation’s regions is the logistics infrastructure. It provides integrated transportation and distribution service of material flows. One of the main elements of logistics infrastructure is a storage infrastructure, which includes distribution center, distribution-and-sortout and sortout warehouses. It is the most expedient to place distribution center in the vicinity of the regional center. One of the tasks of the distribution network creation within the regions of the Russian Federation is to determine the location, capacity and number of stores. When determining regional network location of general purpose warehouses methodological approaches to solving the problems of location of production and non-production can be used which depend on various economic factors. The mathematical models for solving relevant problems are the deployment models. However, the existing models focus on the dimensionless power storage. The purpose of the given work is to develop a model to determine the optimal location of general-purpose warehouses on the Russian Federation area. At the first stage of the work, the authors assess the main economic indicators influencing the choice of the location of general purpose warehouses. An algorithm for solving the first stage, based on ABC, discriminant and cluster analysis were proposed by the authors in earlier papers. At the second stage the specific locations of general purpose warehouses and their power is chosen to provide the cost minimization for the construction and subsequent maintenance of warehouses and transportation heterogeneous products. In order to solve this problem the authors developed a mathematical model that takes into account the possibility of delivery in heterogeneous goods from suppliers and manufacturers in the distribution and storage sorting with specified set of capacities. The model allows

  16. Bayesian Recurrent Neural Network for Language Modeling.

    Science.gov (United States)

    Chien, Jen-Tzung; Ku, Yuan-Chu

    2016-02-01

    A language model (LM) is calculated as the probability of a word sequence that provides the solution to word prediction for a variety of information systems. A recurrent neural network (RNN) is powerful to learn the large-span dynamics of a word sequence in the continuous space. However, the training of the RNN-LM is an ill-posed problem because of too many parameters from a large dictionary size and a high-dimensional hidden layer. This paper presents a Bayesian approach to regularize the RNN-LM and apply it for continuous speech recognition. We aim to penalize the too complicated RNN-LM by compensating for the uncertainty of the estimated model parameters, which is represented by a Gaussian prior. The objective function in a Bayesian classification network is formed as the regularized cross-entropy error function. The regularized model is constructed not only by calculating the regularized parameters according to the maximum a posteriori criterion but also by estimating the Gaussian hyperparameter by maximizing the marginal likelihood. A rapid approximation to a Hessian matrix is developed to implement the Bayesian RNN-LM (BRNN-LM) by selecting a small set of salient outer-products. The proposed BRNN-LM achieves a sparser model than the RNN-LM. Experiments on different corpora show the robustness of system performance by applying the rapid BRNN-LM under different conditions.

  17. Method of derivation and differentiation of mouse embryonic stem cells generating synchronous neuronal networks.

    Science.gov (United States)

    Gazina, Elena V; Morrisroe, Emma; Mendis, Gunarathna D C; Michalska, Anna E; Chen, Joseph; Nefzger, Christian M; Rollo, Benjamin N; Reid, Christopher A; Pera, Martin F; Petrou, Steven

    2018-01-01

    Stem cells-derived neuronal cultures hold great promise for in vitro disease modelling and drug screening. However, currently stem cells-derived neuronal cultures do not recapitulate the functional properties of primary neurons, such as network properties. Cultured primary murine neurons develop networks which are synchronised over large fractions of the culture, whereas neurons derived from mouse embryonic stem cells (ESCs) display only partly synchronised network activity and human pluripotent stem cells-derived neurons have mostly asynchronous network properties. Therefore, strategies to improve correspondence of derived neuronal cultures with primary neurons need to be developed to validate the use of stem cell-derived neuronal cultures as in vitro models. By combining serum-free derivation of ESCs from mouse blastocysts with neuronal differentiation of ESCs in morphogen-free adherent culture we generated neuronal networks with properties recapitulating those of mature primary cortical cultures. After 35days of differentiation ESC-derived neurons developed network activity very similar to that of mature primary cortical neurons. Importantly, ESC plating density was critical for network development. Compared to the previously published methods this protocol generated more synchronous neuronal networks, with high similarity to the networks formed in mature primary cortical culture. We have demonstrated that ESC-derived neuronal networks recapitulating key properties of mature primary cortical networks can be generated by optimising both stem cell derivation and differentiation. This validates the approach of using ESC-derived neuronal cultures for disease modelling and in vitro drug screening. Copyright © 2017 Elsevier B.V. All rights reserved.

  18. Optimizing neural network models: motivation and case studies

    OpenAIRE

    Harp, S A; T. Samad

    2012-01-01

    Practical successes have been achieved  with neural network models in a variety of domains, including energy-related industry. The large, complex design space presented by neural networks is only minimally explored in current practice. The satisfactory results that nevertheless have been obtained testify that neural networks are a robust modeling technology; at the same time, however, the lack of a systematic design approach implies that the best neural network models generally  rem...

  19. A Complex Network Approach to Distributional Semantic Models.

    Directory of Open Access Journals (Sweden)

    Akira Utsumi

    Full Text Available A number of studies on network analysis have focused on language networks based on free word association, which reflects human lexical knowledge, and have demonstrated the small-world and scale-free properties in the word association network. Nevertheless, there have been very few attempts at applying network analysis to distributional semantic models, despite the fact that these models have been studied extensively as computational or cognitive models of human lexical knowledge. In this paper, we analyze three network properties, namely, small-world, scale-free, and hierarchical properties, of semantic networks created by distributional semantic models. We demonstrate that the created networks generally exhibit the same properties as word association networks. In particular, we show that the distribution of the number of connections in these networks follows the truncated power law, which is also observed in an association network. This indicates that distributional semantic models can provide a plausible model of lexical knowledge. Additionally, the observed differences in the network properties of various implementations of distributional semantic models are consistently explained or predicted by considering the intrinsic semantic features of a word-context matrix and the functions of matrix weighting and smoothing. Furthermore, to simulate a semantic network with the observed network properties, we propose a new growing network model based on the model of Steyvers and Tenenbaum. The idea underlying the proposed model is that both preferential and random attachments are required to reflect different types of semantic relations in network growth process. We demonstrate that this model provides a better explanation of network behaviors generated by distributional semantic models.

  20. Methodical Principles for Determination of Optimum Breaking Places of Distributive Electrical Networks with Due Account of Supply Network of 110 kV and Higher

    Directory of Open Access Journals (Sweden)

    M. I. Fursanov

    2008-01-01

    Full Text Available A specified model and algorithm for optimization of slit points in a distributive 10 (6 kV electrical network with due account of supply network of 110 kV and higher have been developed in the paper. In order to determine loss values in supply network a special mathematical model of the closed network has been constructed and the model permits to execute the given operation with minimum computing expenses. The paper proposes and analyzes methods for registration of task limitations: damage due to insufficient supply of electric power, possible network overloads for permissible currents, power supply provision for the 1st category consumers, prohibition against switching in public network and switching-on of sectional apparatus being switched-off according to normal scheme.

  1. Outlier Detection Method Use for the Network Flow Anomaly Detection

    Directory of Open Access Journals (Sweden)

    Rimas Ciplinskas

    2016-06-01

    Full Text Available New and existing methods of cyber-attack detection are constantly being developed and improved because there is a great number of attacks and the demand to protect from them. In prac-tice, current methods of attack detection operates like antivirus programs, i. e. known attacks signatures are created and attacks are detected by using them. These methods have a drawback – they cannot detect new attacks. As a solution, anomaly detection methods are used. They allow to detect deviations from normal network behaviour that may show a new type of attack. This article introduces a new method that allows to detect network flow anomalies by using local outlier factor algorithm. Accom-plished research allowed to identify groups of features which showed the best results of anomaly flow detection according the highest values of precision, recall and F-measure.

  2. Modeling and Model Predictive Power and Rate Control of Wireless Communication Networks

    Directory of Open Access Journals (Sweden)

    Cunwu Han

    2014-01-01

    Full Text Available A novel power and rate control system model for wireless communication networks is presented, which includes uncertainties, input constraints, and time-varying delays in both state and control input. A robust delay-dependent model predictive power and rate control method is proposed, and the state feedback control law is obtained by solving an optimization problem that is derived by using linear matrix inequality (LMI techniques. Simulation results are given to illustrate the effectiveness of the proposed method.

  3. Two stage neural network modelling for robust model predictive control.

    Science.gov (United States)

    Patan, Krzysztof

    2017-11-02

    The paper proposes a novel robust model predictive control scheme realized by means of artificial neural networks. The neural networks are used twofold: to design the so-called fundamental model of a plant and to catch uncertainty associated with the plant model. In order to simplify the optimization process carried out within the framework of predictive control an instantaneous linearization is applied which renders it possible to define the optimization problem in the form of constrained quadratic programming. Stability of the proposed control system is also investigated by showing that a cost function is monotonically decreasing with respect to time. Derived robust model predictive control is tested and validated on the example of a pneumatic servomechanism working at different operating regimes. Copyright © 2017 ISA. Published by Elsevier Ltd. All rights reserved.

  4. Fractal modeling of natural fracture networks. Final report, June 1994--June 1995

    Energy Technology Data Exchange (ETDEWEB)

    Ferer, M.V.; Dean, B.H.; Mick, C.

    1996-04-01

    Recovery from naturally fractured, tight-gas reservoirs is controlled by the fracture network. Reliable characterization of the actual fracture network in the reservoir is severely limited. The location and orientation of fractures intersecting the borehole can be determined, but the length of these fractures cannot be unambiguously determined. Fracture networks can be determined for outcrops, but there is little reason to believe that the network in the reservoir should be identical because of the differences in stresses and history. Because of the lack of detailed information about the actual fracture network, modeling methods must represent the porosity and permeability associated with the fracture network, as accurately as possible with very little apriori information. Three rather different types of approaches have been used: (1) dual porosity simulations; (2) `stochastic` modeling of fracture networks, and (3) fractal modeling of fracture networks. Stochastic models which assume a variety of probability distributions of fracture characteristics have been used with some success in modeling fracture networks. The advantage of these stochastic models over the dual porosity simulations is that real fracture heterogeneities are included in the modeling process. In the sections provided in this paper the authors will present fractal analysis of the MWX site, using the box-counting procedure; (2) review evidence testing the fractal nature of fracture distributions and discuss the advantages of using their fractal analysis over a stochastic analysis; (3) present an efficient algorithm for producing a self-similar fracture networks which mimic the real MWX outcrop fracture network.

  5. Model-Based Method for Sensor Validation

    Science.gov (United States)

    Vatan, Farrokh

    2012-01-01

    Fault detection, diagnosis, and prognosis are essential tasks in the operation of autonomous spacecraft, instruments, and in situ platforms. One of NASA s key mission requirements is robust state estimation. Sensing, using a wide range of sensors and sensor fusion approaches, plays a central role in robust state estimation, and there is a need to diagnose sensor failure as well as component failure. Sensor validation can be considered to be part of the larger effort of improving reliability and safety. The standard methods for solving the sensor validation problem are based on probabilistic analysis of the system, from which the method based on Bayesian networks is most popular. Therefore, these methods can only predict the most probable faulty sensors, which are subject to the initial probabilities defined for the failures. The method developed in this work is based on a model-based approach and provides the faulty sensors (if any), which can be logically inferred from the model of the system and the sensor readings (observations). The method is also more suitable for the systems when it is hard, or even impossible, to find the probability functions of the system. The method starts by a new mathematical description of the problem and develops a very efficient and systematic algorithm for its solution. The method builds on the concepts of analytical redundant relations (ARRs).

  6. k-Degree Anonymity Model for Social Network Data Publishing

    Directory of Open Access Journals (Sweden)

    MACWAN, K. R.

    2017-11-01

    Full Text Available Publicly accessible platform for social networking has gained special attraction because of its easy data sharing. Data generated on such social network is analyzed for various activities like marketing, social psychology, etc. This requires preservation of sensitive attributes before it becomes easily accessible. Simply removing the personal identities of the users before publishing data is not enough to maintain the privacy of the individuals. The structure of the social network data itself reveals much information regarding its users and their connections. To resolve this problem, k-degree anonymous method is adopted. It emphasizes on the modification of the graph to provide at least k number of nodes that contain the same degree. However, this approach is not efficient on a huge amount of social data and the modification of the original data fails to maintain data usefulness. In addition to this, the current anonymization approaches focus on a degree sequence-based graph model which leads to major modification of the graph topological properties. In this paper, we have proposed an improved k-degree anonymity model that retain the social network structural properties and also to provide privacy to the individuals. Utility measurement approach for community based graph model is used to verify the performance of the proposed technique.

  7. Approximation methods for efficient learning of Bayesian networks

    CERN Document Server

    Riggelsen, C

    2008-01-01

    This publication offers and investigates efficient Monte Carlo simulation methods in order to realize a Bayesian approach to approximate learning of Bayesian networks from both complete and incomplete data. For large amounts of incomplete data when Monte Carlo methods are inefficient, approximations are implemented, such that learning remains feasible, albeit non-Bayesian. The topics discussed are: basic concepts about probabilities, graph theory and conditional independence; Bayesian network learning from data; Monte Carlo simulation techniques; and, the concept of incomplete data. In order to provide a coherent treatment of matters, thereby helping the reader to gain a thorough understanding of the whole concept of learning Bayesian networks from (in)complete data, this publication combines in a clarifying way all the issues presented in the papers with previously unpublished work.

  8. An Introduction to Network Psychometrics: Relating Ising Network Models to Item Response Theory Models.

    Science.gov (United States)

    Marsman, M; Borsboom, D; Kruis, J; Epskamp, S; van Bork, R; Waldorp, L J; Maas, H L J van der; Maris, G

    2017-11-07

    In recent years, network models have been proposed as an alternative representation of psychometric constructs such as depression. In such models, the covariance between observables (e.g., symptoms like depressed mood, feelings of worthlessness, and guilt) is explained in terms of a pattern of causal interactions between these observables, which contrasts with classical interpretations in which the observables are conceptualized as the effects of a reflective latent variable. However, few investigations have been directed at the question how these different models relate to each other. To shed light on this issue, the current paper explores the relation between one of the most important network models-the Ising model from physics-and one of the most important latent variable models-the Item Response Theory (IRT) model from psychometrics. The Ising model describes the interaction between states of particles that are connected in a network, whereas the IRT model describes the probability distribution associated with item responses in a psychometric test as a function of a latent variable. Despite the divergent backgrounds of the models, we show a broad equivalence between them and also illustrate several opportunities that arise from this connection.

  9. An investigation of the impact of using different methods for network meta-analysis: a protocol for an empirical evaluation.

    Science.gov (United States)

    Karahalios, Amalia Emily; Salanti, Georgia; Turner, Simon L; Herbison, G Peter; White, Ian R; Veroniki, Areti Angeliki; Nikolakopoulou, Adriani; Mckenzie, Joanne E

    2017-06-24

    Network meta-analysis, a method to synthesise evidence from multiple treatments, has increased in popularity in the past decade. Two broad approaches are available to synthesise data across networks, namely, arm- and contrast-synthesis models, with a range of models that can be fitted within each. There has been recent debate about the validity of the arm-synthesis models, but to date, there has been limited empirical evaluation comparing results using the methods applied to a large number of networks. We aim to address this gap through the re-analysis of a large cohort of published networks of interventions using a range of network meta-analysis methods. We will include a subset of networks from a database of network meta-analyses of randomised trials that have been identified and curated from the published literature. The subset of networks will include those where the primary outcome is binary, the number of events and participants are reported for each direct comparison, and there is no evidence of inconsistency in the network. We will re-analyse the networks using three contrast-synthesis methods and two arm-synthesis methods. We will compare the estimated treatment effects, their standard errors, treatment hierarchy based on the surface under the cumulative ranking (SUCRA) curve, the SUCRA value, and the between-trial heterogeneity variance across the network meta-analysis methods. We will investigate whether differences in the results are affected by network characteristics and baseline risk. The results of this study will inform whether, in practice, the choice of network meta-analysis method matters, and if it does, in what situations differences in the results between methods might arise. The results from this research might also inform future simulation studies.

  10. Social network models predict movement and connectivity in ecological landscapes

    Science.gov (United States)

    Fletcher, Robert J.; Acevedo, M.A.; Reichert, Brian E.; Pias, Kyle E.; Kitchens, Wiley M.

    2011-01-01

    Network analysis is on the rise across scientific disciplines because of its ability to reveal complex, and often emergent, patterns and dynamics. Nonetheless, a growing concern in network analysis is the use of limited data for constructing networks. This concern is strikingly relevant to ecology and conservation biology, where network analysis is used to infer connectivity across landscapes. In this context, movement among patches is the crucial parameter for interpreting connectivity but because of the difficulty of collecting reliable movement data, most network analysis proceeds with only indirect information on movement across landscapes rather than using observed movement to construct networks. Statistical models developed for social networks provide promising alternatives for landscape network construction because they can leverage limited movement information to predict linkages. Using two mark-recapture datasets on individual movement and connectivity across landscapes, we test whether commonly used network constructions for interpreting connectivity can predict actual linkages and network structure, and we contrast these approaches to social network models. We find that currently applied network constructions for assessing connectivity consistently, and substantially, overpredict actual connectivity, resulting in considerable overestimation of metapopulation lifetime. Furthermore, social network models provide accurate predictions of network structure, and can do so with remarkably limited data on movement. Social network models offer a flexible and powerful way for not only understanding the factors influencing connectivity but also for providing more reliable estimates of connectivity and metapopulation persistence in the face of limited data.

  11. Echo state network prediction method and its application in flue gas turbine condition prediction

    Science.gov (United States)

    Wang, Shaohong; Chen, Tao; Xu, Xiaoli

    2010-12-01

    On the background of the complex production process of fluid catalytic cracking energy recovery system in large-scale petrochemical refineries, this paper introduced an improved echo state network (ESN) model prediction method which is used to address the condition trend prediction problem of the key power equipment--flue gas turbine. Singular value decomposition method was used to obtain the ESN output weight. Through selecting the appropriate parameters and discarding small singular value, this method overcame the defective solution problem in the prediction by using the linear regression algorithm, improved the prediction performance of echo state network, and gave the network prediction process. In order to solve the problem of noise contained in production data, the translation-invariant wavelet transform analysis method is combined to denoise the noisy time series before prediction. Condition trend prediction results show the effectiveness of the proposed method.

  12. Variational methods in molecular modeling

    CERN Document Server

    2017-01-01

    This book presents tutorial overviews for many applications of variational methods to molecular modeling. Topics discussed include the Gibbs-Bogoliubov-Feynman variational principle, square-gradient models, classical density functional theories, self-consistent-field theories, phase-field methods, Ginzburg-Landau and Helfrich-type phenomenological models, dynamical density functional theory, and variational Monte Carlo methods. Illustrative examples are given to facilitate understanding of the basic concepts and quantitative prediction of the properties and rich behavior of diverse many-body systems ranging from inhomogeneous fluids, electrolytes and ionic liquids in micropores, colloidal dispersions, liquid crystals, polymer blends, lipid membranes, microemulsions, magnetic materials and high-temperature superconductors. All chapters are written by leading experts in the field and illustrated with tutorial examples for their practical applications to specific subjects. With emphasis placed on physical unders...

  13. Simulation of Foam Divot Weight on External Tank Utilizing Least Squares and Neural Network Methods

    Science.gov (United States)

    Chamis, Christos C.; Coroneos, Rula M.

    2007-01-01

    Simulation of divot weight in the insulating foam, associated with the external tank of the U.S. space shuttle, has been evaluated using least squares and neural network concepts. The simulation required models based on fundamental considerations that can be used to predict under what conditions voids form, the size of the voids, and subsequent divot ejection mechanisms. The quadratic neural networks were found to be satisfactory for the simulation of foam divot weight in various tests associated with the external tank. Both linear least squares method and the nonlinear neural network predicted identical results.

  14. A network-oriented business modeling environment

    Science.gov (United States)

    Bisconti, Cristian; Storelli, Davide; Totaro, Salvatore; Arigliano, Francesco; Savarino, Vincenzo; Vicari, Claudia

    The development of formal models related to the organizational aspects of an enterprise is fundamental when these aspects must be re-engineered and digitalized, especially when the enterprise is involved in the dynamics and value flows of a business network. Business modeling provides an opportunity to synthesize and make business processes, business rules and the structural aspects of an organization explicit, allowing business managers to control their complexity and guide an enterprise through effective decisional and strategic activities. This chapter discusses the main results of the TEKNE project in terms of software components that enable enterprises to configure, store, search and share models of any aspects of their business while leveraging standard and business-oriented technologies and languages to bridge the gap between the world of business people and IT experts and to foster effective business-to-business collaborations.

  15. Quantitative Method for Network Security Situation Based on Attack Prediction

    Directory of Open Access Journals (Sweden)

    Hao Hu

    2017-01-01

    Full Text Available Multistep attack prediction and security situation awareness are two big challenges for network administrators because future is generally unknown. In recent years, many investigations have been made. However, they are not sufficient. To improve the comprehensiveness of prediction, in this paper, we quantitatively convert attack threat into security situation. Actually, two algorithms are proposed, namely, attack prediction algorithm using dynamic Bayesian attack graph and security situation quantification algorithm based on attack prediction. The first algorithm aims to provide more abundant information of future attack behaviors by simulating incremental network penetration. Through timely evaluating the attack capacity of intruder and defense strategies of defender, the likely attack goal, path, and probability and time-cost are predicted dynamically along with the ongoing security events. Furthermore, in combination with the common vulnerability scoring system (CVSS metric and network assets information, the second algorithm quantifies the concealed attack threat into the surfaced security risk from two levels: host and network. Examples show that our method is feasible and flexible for the attack-defense adversarial network environment, which benefits the administrator to infer the security situation in advance and prerepair the critical compromised hosts to maintain normal network communication.

  16. Compartmentalization analysis using discrete fracture network models

    Energy Technology Data Exchange (ETDEWEB)

    La Pointe, P.R.; Eiben, T.; Dershowitz, W. [Golder Associates, Redmond, VA (United States); Wadleigh, E. [Marathon Oil Co., Midland, TX (United States)

    1997-08-01

    This paper illustrates how Discrete Fracture Network (DFN) technology can serve as a basis for the calculation of reservoir engineering parameters for the development of fractured reservoirs. It describes the development of quantitative techniques for defining the geometry and volume of structurally controlled compartments. These techniques are based on a combination of stochastic geometry, computational geometry, and graph the theory. The parameters addressed are compartment size, matrix block size and tributary drainage volume. The concept of DFN models is explained and methodologies to compute these parameters are demonstrated.

  17. Some queuing network models of computer systems

    Science.gov (United States)

    Herndon, E. S.

    1980-01-01

    Queuing network models of a computer system operating with a single workload type are presented. Program algorithms are adapted for use on the Texas Instruments SR-52 programmable calculator. By slightly altering the algorithm to process the G and H matrices row by row instead of column by column, six devices and an unlimited job/terminal population could be handled on the SR-52. Techniques are also introduced for handling a simple load dependent server and for studying interactive systems with fixed multiprogramming limits.

  18. Networks model of the East Turkistan terrorism

    Science.gov (United States)

    Li, Ben-xian; Zhu, Jun-fang; Wang, Shun-guo

    2015-02-01

    The presence of the East Turkistan terrorist network in China can be traced back to the rebellions on the BAREN region in Xinjiang in April 1990. This article intends to research the East Turkistan networks in China and offer a panoramic view. The events, terrorists and their relationship are described using matrices. Then social network analysis is adopted to reveal the network type and the network structure characteristics. We also find the crucial terrorist leader. Ultimately, some results show that the East Turkistan network has big hub nodes and small shortest path, and that the network follows a pattern of small world network with hierarchical structure.

  19. A Unified Access Model for Interconnecting Heterogeneous Wireless Networks

    Science.gov (United States)

    2015-05-01

    validation of the proposed network design for unified network access, and it lays the foundation for implementing a Software-Defined Networking ( SDN ...testing real-world applications. Most importantly, our simulation serves as a template for implementing a unified MAC layer network using SDN . SDN ...is a network program with a programmable, centralized control plane.4 SDN protocols can be used to mediate access between nodes of an HN. The method

  20. Measuring geographic access to health care: raster and network-based methods

    Directory of Open Access Journals (Sweden)

    Delamater Paul L

    2012-05-01

    Full Text Available Abstract Background Inequalities in geographic access to health care result from the configuration of facilities, population distribution, and the transportation infrastructure. In recent accessibility studies, the traditional distance measure (Euclidean has been replaced with more plausible measures such as travel distance or time. Both network and raster-based methods are often utilized for estimating travel time in a Geographic Information System. Therefore, exploring the differences in the underlying data models and associated methods and their impact on geographic accessibility estimates is warranted. Methods We examine the assumptions present in population-based travel time models. Conceptual and practical differences between raster and network data models are reviewed, along with methodological implications for service area estimates. Our case study investigates Limited Access Areas defined by Michigan’s Certificate of Need (CON Program. Geographic accessibility is calculated by identifying the number of people residing more than 30 minutes from an acute care hospital. Both network and raster-based methods are implemented and their results are compared. We also examine sensitivity to changes in travel speed settings and population assignment. Results In both methods, the areas identified as having limited accessibility were similar in their location, configuration, and shape. However, the number of people identified as having limited accessibility varied substantially between methods. Over all permutations, the raster-based method identified more area and people with limited accessibility. The raster-based method was more sensitive to travel speed settings, while the network-based method was more sensitive to the specific population assignment method employed in Michigan. Conclusions Differences between the underlying data models help to explain the variation in results between raster and network-based methods. Considering that the