WorldWideScience

Sample records for multiplicative mixed model

  1. On testing an unspecified function through a linear mixed effects model with multiple variance components.

    Science.gov (United States)

    Wang, Yuanjia; Chen, Huaihou

    2012-12-01

    We examine a generalized F-test of a nonparametric function through penalized splines and a linear mixed effects model representation. With a mixed effects model representation of penalized splines, we imbed the test of an unspecified function into a test of some fixed effects and a variance component in a linear mixed effects model with nuisance variance components under the null. The procedure can be used to test a nonparametric function or varying-coefficient with clustered data, compare two spline functions, test the significance of an unspecified function in an additive model with multiple components, and test a row or a column effect in a two-way analysis of variance model. Through a spectral decomposition of the residual sum of squares, we provide a fast algorithm for computing the null distribution of the test, which significantly improves the computational efficiency over bootstrap. The spectral representation reveals a connection between the likelihood ratio test (LRT) in a multiple variance components model and a single component model. We examine our methods through simulations, where we show that the power of the generalized F-test may be higher than the LRT, depending on the hypothesis of interest and the true model under the alternative. We apply these methods to compute the genome-wide critical value and p-value of a genetic association test in a genome-wide association study (GWAS), where the usual bootstrap is computationally intensive (up to 10(8) simulations) and asymptotic approximation may be unreliable and conservative. © 2012, The International Biometric Society.

  2. Generalized Additive Mixed-Models for Pharmacology Using Integrated Discrete Multiple Organ Co-Culture

    Science.gov (United States)

    Ingersoll, Thomas; Cole, Stephanie; Madren-Whalley, Janna; Booker, Lamont; Dorsey, Russell; Li, Albert; Salem, Harry

    2016-01-01

    Integrated Discrete Multiple Organ Co-culture (IDMOC) is emerging as an in-vitro alternative to in-vivo animal models for pharmacology studies. IDMOC allows dose-response relationships to be investigated at the tissue and organoid levels, yet, these relationships often exhibit responses that are far more complex than the binary responses often measured in whole animals. To accommodate departure from binary endpoints, IDMOC requires an expansion of analytic techniques beyond simple linear probit and logistic models familiar in toxicology. IDMOC dose-responses may be measured at continuous scales, exhibit significant non-linearity such as local maxima or minima, and may include non-independent measures. Generalized additive mixed-modeling (GAMM) provides an alternative description of dose-response that relaxes assumptions of independence and linearity. We compared GAMMs to traditional linear models for describing dose-response in IDMOC pharmacology studies. PMID:27110941

  3. Generalized Additive Mixed-Models for Pharmacology Using Integrated Discrete Multiple Organ Co-Culture.

    Directory of Open Access Journals (Sweden)

    Thomas Ingersoll

    Full Text Available Integrated Discrete Multiple Organ Co-culture (IDMOC is emerging as an in-vitro alternative to in-vivo animal models for pharmacology studies. IDMOC allows dose-response relationships to be investigated at the tissue and organoid levels, yet, these relationships often exhibit responses that are far more complex than the binary responses often measured in whole animals. To accommodate departure from binary endpoints, IDMOC requires an expansion of analytic techniques beyond simple linear probit and logistic models familiar in toxicology. IDMOC dose-responses may be measured at continuous scales, exhibit significant non-linearity such as local maxima or minima, and may include non-independent measures. Generalized additive mixed-modeling (GAMM provides an alternative description of dose-response that relaxes assumptions of independence and linearity. We compared GAMMs to traditional linear models for describing dose-response in IDMOC pharmacology studies.

  4. Optimization of end-members used in multiple linear regression geochemical mixing models

    Science.gov (United States)

    Dunlea, Ann G.; Murray, Richard W.

    2015-11-01

    Tracking marine sediment provenance (e.g., of dust, ash, hydrothermal material, etc.) provides insight into contemporary ocean processes and helps construct paleoceanographic records. In a simple system with only a few end-members that can be easily quantified by a unique chemical or isotopic signal, chemical ratios and normative calculations can help quantify the flux of sediment from the few sources. In a more complex system (e.g., each element comes from multiple sources), more sophisticated mixing models are required. MATLAB codes published in Pisias et al. solidified the foundation for application of a Constrained Least Squares (CLS) multiple linear regression technique that can use many elements and several end-members in a mixing model. However, rigorous sensitivity testing to check the robustness of the CLS model is time and labor intensive. MATLAB codes provided in this paper reduce the time and labor involved and facilitate finding a robust and stable CLS model. By quickly comparing the goodness of fit between thousands of different end-member combinations, users are able to identify trends in the results that reveal the CLS solution uniqueness and the end-member composition precision required for a good fit. Users can also rapidly check that they have the appropriate number and type of end-members in their model. In the end, these codes improve the user's confidence that the final CLS model(s) they select are the most reliable solutions. These advantages are demonstrated by application of the codes in two case studies of well-studied datasets (Nazca Plate and South Pacific Gyre).

  5. Generalized linear longitudinal mixed models with linear covariance structure and multiplicative random effects

    DEFF Research Database (Denmark)

    Holst, René; Jørgensen, Bent

    2015-01-01

    The paper proposes a versatile class of multiplicative generalized linear longitudinal mixed models (GLLMM) with additive dispersion components, based on explicit modelling of the covariance structure. The class incorporates a longitudinal structure into the random effects models and retains...... a marginal as well as a conditional interpretation. The estimation procedure is based on a computationally efficient quasi-score method for the regression parameters combined with a REML-like bias-corrected Pearson estimating function for the dispersion and correlation parameters. This avoids...... the multidimensional integral of the conventional GLMM likelihood and allows an extension of the robust empirical sandwich estimator for use with both association and regression parameters. The method is applied to a set of otholit data, used for age determination of fish....

  6. Resident space object tracking using an interacting multiple model mixing scheme

    Science.gov (United States)

    Lam, Quang M.

    2014-06-01

    A multiple model estimation scheme is proposed to enhance the robustness of a resident space object (RSO) tracker subject to its maneuverability uncertainties (unplanned or unknown jet firing activities) and other system variations. The concept is based on the Interacting Multiple Model (IMM) estimation scheme. Within the IMM framework, two Extended Kalman Filter (EKF) models: (i) a 6 State (Position and Velocity of a constant orbiting RSO) EKF and (ii) a 9 state (Position, Velocity, and Acceleration of a maneuvering RSO) EKF are designed and implemented to achieve RSO maneuvering detection and enhanced tracking accuracy. The IMM estimation scheme is capable of providing enhanced state vector estimation accuracy and consistent prediction of the RSO maneuvering status, thus offering an attractive design feature for future Space Situational Awareness (SSA) missions. The design concept is illustrated using the Matlab/Based Simulation testing environment.

  7. Multiple imputation of missing values was not necessary before performing a longitudinal mixed-model analysis

    NARCIS (Netherlands)

    Twisk, J.; de Boer, M.; de Vente, W.; Heymans, M.

    2013-01-01

    Background and Objectives: As a result of the development of sophisticated techniques, such as multiple imputation, the interest in handling missing data in longitudinal studies has increased enormously in past years. Within the field of longitudinal data analysis, there is a current debate on wheth

  8. Fisher information matrix for nonlinear mixed effects multiple response models: evaluation of the appropriateness of the first order linearization using a pharmacokinetic/pharmacodynamic model.

    Science.gov (United States)

    Bazzoli, Caroline; Retout, Sylvie; Mentré, France

    2009-06-30

    We focus on the Fisher information matrix used for design evaluation and optimization in nonlinear mixed effects multiple response models. We evaluate the appropriateness of its expression computed by linearization as proposed for a single response model. Using a pharmacokinetic-pharmacodynamic (PKPD) example, we first compare the computation of the Fisher information matrix with approximation to one derived from the observed matrix on a large simulation using the stochastic approximation expectation-maximization algorithm (SAEM). The expression of the Fisher information matrix for multiple responses is also evaluated by comparison with the empirical information obtained through a replicated simulation study using the first-order linearization estimation methods implemented in the NONMEM software (first-order (FO), first-order conditional estimate (FOCE)) and the SAEM algorithm in the MONOLIX software. The predicted errors given by the approximated information matrix are close to those given by the information matrix obtained without linearization using SAEM and to the empirical ones obtained with FOCE and SAEM. The simulation study also illustrates the accuracy of both FOCE and SAEM estimation algorithms when jointly modelling multiple responses and the major limitations of the FO method. This study highlights the appropriateness of the approximated Fisher information matrix for multiple responses, which is implemented in PFIM 3.0, an extension of the R function PFIM dedicated to design evaluation and optimization. It also emphasizes the use of this computing tool for designing population multiple response studies, as for instance in PKPD studies or in PK studies including the modelling of the PK of a drug and its active metabolite.

  9. Multiple Higgs-Portal and Gauge-Kinetic Mixings

    CERN Document Server

    Choi, S Y; Zerwas, P M

    2013-01-01

    We develop a phenomenological formalism for mixing effects between the Standard Model and hidden-sector fields, motivated by dark matter in the Universe as well as string theories. The scheme includes multiple Higgs-portal interactions in the scalar sector as well as multiple gauge-kinetic mixings in the abelian gauge sector. While some of the mixing effects can be cast in closed form, other elements can be controlled analytically only by means of perturbative expansions in the ratio of standard scales over large hidden scales. Higgs and vector-boson masses and mixings are illustrated numerically for characteristic processes.

  10. Bayesian quantile regression-based partially linear mixed-effects joint models for longitudinal data with multiple features.

    Science.gov (United States)

    Zhang, Hanze; Huang, Yangxin; Wang, Wei; Chen, Henian; Langland-Orban, Barbara

    2017-01-01

    In longitudinal AIDS studies, it is of interest to investigate the relationship between HIV viral load and CD4 cell counts, as well as the complicated time effect. Most of common models to analyze such complex longitudinal data are based on mean-regression, which fails to provide efficient estimates due to outliers and/or heavy tails. Quantile regression-based partially linear mixed-effects models, a special case of semiparametric models enjoying benefits of both parametric and nonparametric models, have the flexibility to monitor the viral dynamics nonparametrically and detect the varying CD4 effects parametrically at different quantiles of viral load. Meanwhile, it is critical to consider various data features of repeated measurements, including left-censoring due to a limit of detection, covariate measurement error, and asymmetric distribution. In this research, we first establish a Bayesian joint models that accounts for all these data features simultaneously in the framework of quantile regression-based partially linear mixed-effects models. The proposed models are applied to analyze the Multicenter AIDS Cohort Study (MACS) data. Simulation studies are also conducted to assess the performance of the proposed methods under different scenarios.

  11. ADVANCED MIXING MODELS

    Energy Technology Data Exchange (ETDEWEB)

    Lee, S; Richard Dimenna, R; David Tamburello, D

    2008-11-13

    The process of recovering the waste in storage tanks at the Savannah River Site (SRS) typically requires mixing the contents of the tank with one to four dual-nozzle jet mixers located within the tank. The typical criteria to establish a mixed condition in a tank are based on the number of pumps in operation and the time duration of operation. To ensure that a mixed condition is achieved, operating times are set conservatively long. This approach results in high operational costs because of the long mixing times and high maintenance and repair costs for the same reason. A significant reduction in both of these costs might be realized by reducing the required mixing time based on calculating a reliable indicator of mixing with a suitably validated computer code. The work described in this report establishes the basis for further development of the theory leading to the identified mixing indicators, the benchmark analyses demonstrating their consistency with widely accepted correlations, and the application of those indicators to SRS waste tanks to provide a better, physically based estimate of the required mixing time. Waste storage tanks at SRS contain settled sludge which varies in height from zero to 10 ft. The sludge has been characterized and modeled as micron-sized solids, typically 1 to 5 microns, at weight fractions as high as 20 to 30 wt%, specific gravities to 1.4, and viscosities up to 64 cp during motion. The sludge is suspended and mixed through the use of submersible slurry jet pumps. To suspend settled sludge, water is added to the tank as a slurry medium and stirred with the jet pump. Although there is considerable technical literature on mixing and solid suspension in agitated tanks, very little literature has been published on jet mixing in a large-scale tank. If shorter mixing times can be shown to support Defense Waste Processing Facility (DWPF) or other feed requirements, longer pump lifetimes can be achieved with associated operational cost and

  12. ADVANCED MIXING MODELS

    Energy Technology Data Exchange (ETDEWEB)

    Lee, S; Dimenna, R; Tamburello, D

    2011-02-14

    height from zero to 10 ft. The sludge has been characterized and modeled as micron-sized solids, typically 1 to 5 microns, at weight fractions as high as 20 to 30 wt%, specific gravities to 1.4, and viscosities up to 64 cp during motion. The sludge is suspended and mixed through the use of submersible slurry jet pumps. To suspend settled sludge, water is added to the tank as a slurry medium and stirred with the jet pump. Although there is considerable technical literature on mixing and solid suspension in agitated tanks, very little literature has been published on jet mixing in a large-scale tank. One of the main objectives in the waste processing is to provide feed of a uniform slurry composition at a certain weight percentage (e.g. typically {approx}13 wt% at SRS) over an extended period of time. In preparation of the sludge for slurrying, several important questions have been raised with regard to sludge suspension and mixing of the solid suspension in the bulk of the tank: (1) How much time is required to prepare a slurry with a uniform solid composition? (2) How long will it take to suspend and mix the sludge for uniform composition in any particular waste tank? (3) What are good mixing indicators to answer the questions concerning sludge mixing stated above in a general fashion applicable to any waste tank/slurry pump geometry and fluid/sludge combination?

  13. Summarizing EC50 estimates from multiple dose-response experiments: a comparison of a meta-analysis strategy to a mixed-effects model approach.

    Science.gov (United States)

    Jiang, Xiaoqi; Kopp-Schneider, Annette

    2014-05-01

    Dose-response studies are performed to investigate the potency of a compound. EC50 is the concentration of the compound that gives half-maximal response. Dose-response data are typically evaluated by using a log-logistic model that includes EC50 as one of the model parameters. Often, more than one experiment is carried out to determine the EC50 value for a compound, requiring summarization of EC50 estimates from a series of experiments. In this context, mixed-effects models are designed to estimate the average behavior of EC50 values over all experiments by considering the variabilities within and among experiments simultaneously. However, fitting nonlinear mixed-effects models is more complicated than in a linear situation, and convergence problems are often encountered. An alternative strategy is the application of a meta-analysis approach, which combines EC50 estimates obtained from separate log-logistic model fitting. These two proposed strategies to summarize EC50 estimates from multiple experiments are compared in a simulation study and real data example. We conclude that the meta-analysis strategy is a simple and robust method to summarize EC50 estimates from multiple experiments, especially suited in the case of a small number of experiments.

  14. A mixed relaxed clock model

    Science.gov (United States)

    2016-01-01

    Over recent years, several alternative relaxed clock models have been proposed in the context of Bayesian dating. These models fall in two distinct categories: uncorrelated and autocorrelated across branches. The choice between these two classes of relaxed clocks is still an open question. More fundamentally, the true process of rate variation may have both long-term trends and short-term fluctuations, suggesting that more sophisticated clock models unfolding over multiple time scales should ultimately be developed. Here, a mixed relaxed clock model is introduced, which can be mechanistically interpreted as a rate variation process undergoing short-term fluctuations on the top of Brownian long-term trends. Statistically, this mixed clock represents an alternative solution to the problem of choosing between autocorrelated and uncorrelated relaxed clocks, by proposing instead to combine their respective merits. Fitting this model on a dataset of 105 placental mammals, using both node-dating and tip-dating approaches, suggests that the two pure clocks, Brownian and white noise, are rejected in favour of a mixed model with approximately equal contributions for its uncorrelated and autocorrelated components. The tip-dating analysis is particularly sensitive to the choice of the relaxed clock model. In this context, the classical pure Brownian relaxed clock appears to be overly rigid, leading to biases in divergence time estimation. By contrast, the use of a mixed clock leads to more recent and more reasonable estimates for the crown ages of placental orders and superorders. Altogether, the mixed clock introduced here represents a first step towards empirically more adequate models of the patterns of rate variation across phylogenetic trees. This article is part of the themed issue ‘Dating species divergences using rocks and clocks’. PMID:27325829

  15. Mixed additive models

    Science.gov (United States)

    Carvalho, Francisco; Covas, Ricardo

    2016-06-01

    We consider mixed models y =∑i =0 w Xiβi with V (y )=∑i =1 w θiMi Where Mi=XiXi⊤ , i = 1, . . ., w, and µ = X0β0. For these we will estimate the variance components θ1, . . ., θw, aswell estimable vectors through the decomposition of the initial model into sub-models y(h), h ∈ Γ, with V (y (h ))=γ (h )Ig (h )h ∈Γ . Moreover we will consider L extensions of these models, i.e., y˚=Ly+ɛ, where L=D (1n1, . . ., 1nw) and ɛ, independent of y, has null mean vector and variance covariance matrix θw+1Iw, where w =∑i =1 n wi .

  16. The Additive Hazard Mixing Models

    Institute of Scientific and Technical Information of China (English)

    Ping LI; Xiao-liang LING

    2012-01-01

    This paper is concerned with the aging and dependence properties in the additive hazard mixing models including some stochastic comparisons.Further,some useful bounds of reliability functions in additive hazard mixing models are obtained.

  17. Generalized, Linear, and Mixed Models

    CERN Document Server

    McCulloch, Charles E; Neuhaus, John M

    2011-01-01

    An accessible and self-contained introduction to statistical models-now in a modernized new editionGeneralized, Linear, and Mixed Models, Second Edition provides an up-to-date treatment of the essential techniques for developing and applying a wide variety of statistical models. The book presents thorough and unified coverage of the theory behind generalized, linear, and mixed models and highlights their similarities and differences in various construction, application, and computational aspects.A clear introduction to the basic ideas of fixed effects models, random effects models, and mixed m

  18. Multiple Quantum Coherences (MQ) NMR and Entanglement Dynamics in the Mixed-Three-Spin XXX Heisenberg Model with Single-Ion Anisotropy

    Science.gov (United States)

    Arian Zad, Hamid

    2016-12-01

    We analytically investigate Multiple Quantum (MQ) NMR dynamics in a mixed-three-spin (1/2,1,1/2) system with XXX Heisenberg model at the front of an external homogeneous magnetic field B. A single-ion anisotropy property ζ is considered for the spin-1. The intensities dependence of MQ NMR coherences on their orders (zeroth and second orders) for two pairs of spins (1,1/2) and (1/2,1/2) of the favorite tripartite system are obtained. It is also investigated dynamics of the pairwise quantum entanglement for the bipartite (sub)systems (1,1/2) and (1/2,1/2) permanently coupled by, respectively, coupling constants J}1 and J}2, by means of concurrence and fidelity. Then, some straightforward comparisons are done between these quantities and the intensities of MQ NMR coherences and ultimately some interesting results are reported. We also show that the time evolution of MQ coherences based on the reduced density matrix of the pair spins (1,1/2) is closely connected with the dynamics of the pairwise entanglement. Finally, we prove that one can introduce MQ coherence of the zeroth order corresponds to the pair spins (1,1/2) as an entanglement witness at some special time intervals.

  19. Inferring polymorphism-induced regulatory gene networks active in human lymphocyte cell lines by weighted linear mixed model analysis of multiple RNA-Seq datasets.

    Directory of Open Access Journals (Sweden)

    Wensheng Zhang

    Full Text Available Single-nucleotide polymorphisms (SNPs contribute to the between-individual expression variation of many genes. A regulatory (trait-associated SNP is usually located near or within a (host gene, possibly influencing the gene's transcription or/and post-transcriptional modification. But its targets may also include genes that are physically farther away from it. A heuristic explanation of such multiple-target interferences is that the host gene transfers the SNP genotypic effects to the distant gene(s by a transcriptional or signaling cascade. These connections between the host genes (regulators and the distant genes (targets make the genetic analysis of gene expression traits a promising approach for identifying unknown regulatory relationships. In this study, through a mixed model analysis of multi-source digital expression profiling for 140 human lymphocyte cell lines (LCLs and the genotypes distributed by the international HapMap project, we identified 45 thousands of potential SNP-induced regulatory relationships among genes (the significance level for the underlying associations between expression traits and SNP genotypes was set at FDR < 0.01. We grouped the identified relationships into four classes (paradigms according to the two different mechanisms by which the regulatory SNPs affect their cis- and trans- regulated genes, modifying mRNA level or altering transcript splicing patterns. We further organized the relationships in each class into a set of network modules with the cis- regulated genes as hubs. We found that the target genes in a network module were often characterized by significant functional similarity, and the distributions of the target genes in three out of the four networks roughly resemble a power-law, a typical pattern of gene networks obtained from mutation experiments. By two case studies, we also demonstrated that significant biological insights can be inferred from the identified network modules.

  20. Discriminative Mixed-Membership Models

    Data.gov (United States)

    National Aeronautics and Space Administration — Although mixed-membership models have achieved great success in unsupervised learning, they have not been widely applied to classification problems. In this paper,...

  1. Kriging with mixed effects models

    Directory of Open Access Journals (Sweden)

    Alessio Pollice

    2007-10-01

    Full Text Available In this paper the effectiveness of the use of mixed effects models for estimation and prediction purposes in spatial statistics for continuous data is reviewed in the classical and Bayesian frameworks. A case study on agricultural data is also provided.

  2. Bayesian stable isotope mixing models

    Science.gov (United States)

    In this paper we review recent advances in Stable Isotope Mixing Models (SIMMs) and place them into an over-arching Bayesian statistical framework which allows for several useful extensions. SIMMs are used to quantify the proportional contributions of various sources to a mixtur...

  3. A mixed-model quantitative trait loci (QTL) analysis for multiple-environment trial data using environmental covariables for QTL-by-environment interactions, with an example in maize.

    Science.gov (United States)

    Boer, Martin P; Wright, Deanne; Feng, Lizhi; Podlich, Dean W; Luo, Lang; Cooper, Mark; van Eeuwijk, Fred A

    2007-11-01

    Complex quantitative traits of plants as measured on collections of genotypes across multiple environments are the outcome of processes that depend in intricate ways on genotype and environment simultaneously. For a better understanding of the genetic architecture of such traits as observed across environments, genotype-by-environment interaction should be modeled with statistical models that use explicit information on genotypes and environments. The modeling approach we propose explains genotype-by-environment interaction by differential quantitative trait locus (QTL) expression in relation to environmental variables. We analyzed grain yield and grain moisture for an experimental data set composed of 976 F(5) maize testcross progenies evaluated across 12 environments in the U.S. corn belt during 1994 and 1995. The strategy we used was based on mixed models and started with a phenotypic analysis of multi-environment data, modeling genotype-by-environment interactions and associated genetic correlations between environments, while taking into account intraenvironmental error structures. The phenotypic mixed models were then extended to QTL models via the incorporation of marker information as genotypic covariables. A majority of the detected QTL showed significant QTL-by-environment interactions (QEI). The QEI were further analyzed by including environmental covariates into the mixed model. Most QEI could be understood as differential QTL expression conditional on longitude or year, both consequences of temperature differences during critical stages of the growth.

  4. A detailed aerosol mixing state model for investigating interactions between mixing state, semivolatile partitioning, and coagulation

    Directory of Open Access Journals (Sweden)

    J. Lu

    2010-01-01

    Full Text Available A new method for describing externally mixed particles, the Detailed Aerosol Mixing State (DAMS representation, is presented in this study. This novel method classifies aerosols by both composition and size, using a user-specified mixing criterion to define boundaries between compositional populations. Interactions between aerosol mixing state, semivolatile partitioning, and coagulation are investigated with a Lagrangian box model that incorporates the DAMS approach. Model results predict that mixing state affects the amount and types of semivolatile organics that partition to available aerosol phases, causing external mixtures to produce a more size-varying composition than internal mixtures. Both coagulation and condensation contribute to the mixing of emitted particles, producing a collection of multiple compositionally distinct aerosol populations that exists somewhere between the extremes of a strictly external or internal mixture. The selection of mixing criteria has a significant impact on the size and type of individual populations that compose the modeled aerosol mixture.

  5. Linear mixed models in sensometrics

    DEFF Research Database (Denmark)

    Kuznetsova, Alexandra

    quality of decision making in Danish as well as international food companies and other companies using the same methods. The two open-source R packages lmerTest and SensMixed implement and support the methodological developments in the research papers as well as the ANOVA modelling part of the Consumer......Today’s companies and researchers gather large amounts of data of different kind. In consumer studies the objective is the collection of the data to better understand consumer acceptance of products. In such studies a number of persons (generally not trained) are selected in order to score products......, texture, sound - depending on the aim of a study. It is a common approach in both studies to consider persons coming from a larger population, which, from the statistical perspective, leads to the use of mixed effects models, where consumers/assessors enter as random effects (Lawless and Heymann, 1997...

  6. Mixed Effects Models for Complex Data

    CERN Document Server

    Wu, Lang

    2009-01-01

    Presenting effective approaches to address missing data, measurement errors, censoring, and outliers in longitudinal data, this book covers linear, nonlinear, generalized linear, nonparametric, and semiparametric mixed effects models. It links each mixed effects model with the corresponding class of regression model for cross-sectional data and discusses computational strategies for likelihood estimations of mixed effects models. The author briefly describes generalized estimating equations methods and Bayesian mixed effects models and explains how to implement standard models using R and S-Pl

  7. Multiple scattering of light by water cloud droplets with external and internal mixing of black carbon aerosols

    Institute of Scientific and Technical Information of China (English)

    Wang Hai-Hua; Sun Xian-Ming

    2012-01-01

    The mixture of water cloud droplets with black carbon impurities is modeled by external and internal mixing models.The internal mixing model is modeled with a two-layered sphere(water cloud droplets containing black carbon(BC)inclusions),and tihe single scattering and absorption characteristics are calculated at the visible wavelength of 0.55 μm by using the Lorenz Mie theory.The external mixing model is developed assuming that the same amount of BC particles are mixed with the water droplets externally.The multiple scattering characteristics we computed by using the Monte Carlo method.The results show that when the size of the BC aerosol is small,the reflection intensity of the internal mixing model is bigger than that of the external mixing model.However,if the size of the BC aerosol is big,the absorption of the internal mixing model will be larger than that of the external mixing model.

  8. Quark Mixing and Preon Model

    Science.gov (United States)

    Senju, H.

    1991-07-01

    Inspired by unique features of the preon-subpreon model, we propose a new scheme for quark mixing. In our scheme, the mass relations m_{d} << m_{s} << m_{b} and m_{u} << m_{c} << m_{t} are naturally understood. The resultant CKM matrix has very nice properties. The fact that |V_{us}| and |V_{cd}| are remarkably large compared with other off-diagonal elements is naturally understood. |V_{cb}| =~ |V_{ts}| is predicted and their small values are explained. |V_{ub}| and |V_{td}| are predicted to be much smaller than |V_{cb}|. The parametrization invariant measure of CP violation, J, is predicted to be |V_{ud}| |V_{ub}| |V_{td}| sin phi. The mass relations and mixings of q', q'', l_{s} and leptons are also discussed.

  9. Absolute distance measurement based on multiple self-mixing interferometry

    Science.gov (United States)

    Duan, Zhiwei; Yu, Yangyang; Gao, Bingkun; Jiang, Chunlei

    2017-04-01

    To improve the precision of distance measurement using laser Self-Mixing Interferometry (SMI) and compute short distance, we propose a method of Multiple Self-Mixing Interferometry (MSMI) that is modulated with a triangular wave. The principle of this method has been described in this paper. Experiments at different distances and amplitudes of modulation current are based on the proposed method. Low-priced and easily operated experimental devices are built. Experimental results show that a resolution of 2.7 mm can be achieved for absolute distance ranging from 2.2 to 23 cm.

  10. Automatic Modulation Recognition of Mixed Multiple Source Signals

    Science.gov (United States)

    Tan, Xiaobo; Zhang, Hang; Lu, Wei

    2011-03-01

    In this paper, automatic modulation recognition of mixed multiple source signals is discussed. At first, the algorithm of equivariant adaptive source separation (EASI) is employed to separate signals from their mixed waveforms. Four features of five modulated signals are extracted and then two classifiers, decision tree and neutral network are used to complete modulation classification. The effects of symbol shaping on features extraction and validation of source separation are also investigated. Simulations show that the average probability of correct recognition of the classifiers is very depended on the performance of source separation. When SNR (Signal to Noise Ratio) is larger than 15 dB and the number of mixed source signals is less than 4, the average probability of correct recognition is above 0.6 for decision tree classifier and 0.63 for neutral network classifier. Simulations and discussions about automatic modulation recognition for source signals surfed Rayleigh flat fading are also presented.

  11. Nonlinear Mixed-Effects Models for Repairable Systems Reliability

    Institute of Scientific and Technical Information of China (English)

    TAN Fu-rong; JIANG Zhi-bin; KUO Way; Suk Joo BAE

    2007-01-01

    Mixed-effects models, also called random-effects models, are a regression type of analysis which enables the analyst to not only describe the trend over time within each subject, but also to describe the variation among different subjects. Nonlinear mixed-effects models provide a powerful and flexible tool for handling the unbalanced count data. In this paper, nonlinear mixed-effects models are used to analyze the failure data from a repairable system with multiple copies. By using this type of models, statistical inferences about the population and all copies can be made when accounting for copy-to-copy variance. Results of fitting nonlinear mixed-effects models to nine failure-data sets show that the nonlinear mixed-effects models provide a useful tool for analyzing the failure data from multi-copy repairable systems.

  12. Analysis of a Mixed Strategy for Multiple Relay Networks

    CERN Document Server

    Rost, P

    2007-01-01

    In their landmark paper Cover and El Gamal proposed different coding strategies for the relay channel with a single relay supporting a communication pair. These strategies are the decode-and-forward and compress-and-forward approach, as well as a general lower bound on the capacity of a relay network which relies on the mixed application of the previous two strategies. So far, only parts of their work - the decode-and-forward and the compress-and-forward strategy - have been applied to networks with multiple relays. This paper derives a mixed strategy for multiple relay networks using a combined approach of partial decode-and-forward with N +1 levels and the ideas of successive refinement with different side information at the receivers. After describing the protocol structure, we present the achievable rates for the discrete memoryless relay channel as well as Gaussian multiple relay networks. Using these results we compare the mixed strategy with some special cases, e. g., multilevel decode-and-forward, dis...

  13. 纵向研究缺失数据多重填补及混合效应模型分析%Using multiple imputation and mixed-effects model on missing data:a longitudinal study

    Institute of Scientific and Technical Information of China (English)

    申宁宁; 房瑞玲; 高宇钊; 李少琼; 张军锋; 刘桂芬

    2015-01-01

    目的阐明马尔可夫链蒙特卡罗(MCMC)多重填补与重复测量资料混合效应线性模型分析的原理,完成纵向监测数据缺失模型的软件实现。方法根据222例高血压患者纵向监测的完全数据,产生缺失比例为18.92%的随机缺失数据集。应用MCMC多重填补方法,进行缺失值填补的模拟研究以及实例分析,并实现重复测量混合效应线性模型分析。结果模拟研究和实例分析表明,样本例数200,缺失比例20%,MCMC法多重填补5次所得结果最稳健;填补前缺失数据与完全数据的混合效应模型分析结果不同,填补后完整数据与完全数据的混合效应模型分析结果相同。结论 MCMC多重填补可以充分利用缺失资料信息,是处理缺失数据模型分析的有效方法之一;针对出现缺失的重复测量资料,结合应用混合效应模型与MCMC多重填补2种方法,从而得出更为符合客观实际的结果。%Objective To investigate the mechanisms of Markov Chain Monte Carlo (MCMC) multiple imputa-tion and mixed-effects linear model analysis of repeated measurement data, and to achieve software implementation of longitudinal monitoring on missing data model. Methods Depending on 222 longitudinal monitored complete data of patients with hypertension, a ratio of 18.92% random missing data set was generated. MCMC multiple imputation was used for simulation study and case study on multiple imputation of the missing value, and to achieve mixed-effects linear model analysis of repeated measurement data. Results The simulation study and case study showed that the findings of five-times MCMC multiple imputation on 200 samples with 20%missing data were the most reliable. The findings of mixed-effects model analysis between the missing data and the complete data were different before imputa-tion, which were same after imputation. Conclusion MCMC multiple imputation can take full advantage of the infor

  14. Rapid Confined Mixing Using Transverse Jets Part 2: Multiple Jets

    Science.gov (United States)

    Forliti, David; Salazar, David

    2012-11-01

    An experimental study has been conducted at the Air Force Research Laboratory at Edwards Air Force Base to investigate the properties of confined mixing devices that employ transverse jets. The experiment considers the mixing of water with a mixture of water and fluorescein, and planar laser induced fluorescence was used to measure instantaneous mixture fraction distributions in the cross section view. Part one of this study presents the scaling law development and results for a single confined transverse jet. Part two will describe the results of configurations including multiple transverse jets. The different regimes of mixing behavior, ranging from under to overpenetration of the transverse jets, are characterized in terms of a new scaling law parameter presented in part one. The level of unmixedness, a primary metric for mixing device performance, is quantified for different jet diameters, number of jets, and relative flow rates. It is apparent that the addition of a second transverse jet provides enhanced scalar uniformity in the main pipe flow cross section compared to a single jet. Three and six jet configurations also provide highly uniform scalar distributions. Turbulent scalar fluctuation intensities, spectral features, and spatial eigenfunctions using the proper orthogonal decomposition will be presented. Distribution A: Public Release, Public Affairs Clearance Number: 12656.

  15. Mixed models for predictive modeling in actuarial science

    NARCIS (Netherlands)

    Antonio, K.; Zhang, Y.

    2012-01-01

    We start with a general discussion of mixed (also called multilevel) models and continue with illustrating specific (actuarial) applications of this type of models. Technical details on (linear, generalized, non-linear) mixed models follow: model assumptions, specifications, estimation techniques

  16. Multiple Estimation Architecture in Discrete-Time Adaptive Mixing Control

    Directory of Open Access Journals (Sweden)

    Simone Baldi

    2013-05-01

    Full Text Available Adaptive mixing control (AMC is a recently developed control scheme for uncertain plants, where the control action coming from a bank of precomputed controller is mixed based on the parameter estimates generated by an on-line parameter estimator. Even if the stability of the control scheme, also in the presence of modeling errors and disturbances, has been shown analytically, its transient performance might be sensitive to the initial conditions of the parameter estimator. In particular, for some initial conditions, transient oscillations may not be acceptable in practical applications. In order to account for such a possible phenomenon and to improve the learning capability of the adaptive scheme, in this paper a new mixing architecture is developed, involving the use of parallel parameter estimators, or multi-estimators, each one working on a small subset of the uncertainty set. A supervisory logic, using performance signals based on the past and present estimation error, selects the parameter estimate to determine the mixing of the controllers. The stability and robustness properties of the resulting approach, referred to as multi-estimator adaptive mixing control (Multi-AMC, are analytically established. Besides, extensive simulations demonstrate that the scheme improves the transient performance of the original AMC with a single estimator. The control scheme and the analysis are carried out in a discrete-time framework, for easier implementation of the method in digital control.

  17. Mixed-mode modelling mixing methodologies for organisational intervention

    CERN Document Server

    Clarke, Steve; Lehaney, Brian

    2001-01-01

    The 1980s and 1990s have seen a growing interest in research and practice in the use of methodologies within problem contexts characterised by a primary focus on technology, human issues, or power. During the last five to ten years, this has given rise to challenges regarding the ability of a single methodology to address all such contexts, and the consequent development of approaches which aim to mix methodologies within a single problem situation. This has been particularly so where the situation has called for a mix of technological (the so-called 'hard') and human­ centred (so-called 'soft') methods. The approach developed has been termed mixed-mode modelling. The area of mixed-mode modelling is relatively new, with the phrase being coined approximately four years ago by Brian Lehaney in a keynote paper published at the 1996 Annual Conference of the UK Operational Research Society. Mixed-mode modelling, as suggested above, is a new way of considering problem situations faced by organisations. Traditional...

  18. Multiplicative LSTM for sequence modelling

    OpenAIRE

    Krause, Ben; Lu, Liang; Murray, Iain; Renals, Steve

    2016-01-01

    This paper introduces multiplicative LSTM, a novel hybrid recurrent neural network architecture for sequence modelling that combines the long short-term memory (LSTM) and multiplicative recurrent neural network architectures. Multiplicative LSTM is motivated by its flexibility to have very different recurrent transition functions for each possible input, which we argue helps make it more expressive in autoregressive density estimation. We show empirically that multiplicative LSTM outperforms ...

  19. Composite model with large mixing of neutrinos

    CERN Document Server

    Haba, N

    1999-01-01

    We suggest a simple composite model that induces the large flavor mixing of neutrino in the supersymmetric theory. This model has only one hyper-color in addition to the standard gauge group, which makes composite states of preons. In this model, {\\bf 10} and {\\bf 1} representations in SU(5) grand unified theory are composite states and produce the mass hierarchy. This explains why the large mixing is realized in the lepton sector, while the small mixing is realized in the quark sector. This model can naturally solve the atmospheric neutrino problem. We can also solve the solar neutrino problem by improving the model.

  20. Linear mixed models for longitudinal data

    CERN Document Server

    Molenberghs, Geert

    2000-01-01

    This paperback edition is a reprint of the 2000 edition. This book provides a comprehensive treatment of linear mixed models for continuous longitudinal data. Next to model formulation, this edition puts major emphasis on exploratory data analysis for all aspects of the model, such as the marginal model, subject-specific profiles, and residual covariance structure. Further, model diagnostics and missing data receive extensive treatment. Sensitivity analysis for incomplete data is given a prominent place. Several variations to the conventional linear mixed model are discussed (a heterogeity model, conditional linear mixed models). This book will be of interest to applied statisticians and biomedical researchers in industry, public health organizations, contract research organizations, and academia. The book is explanatory rather than mathematically rigorous. Most analyses were done with the MIXED procedure of the SAS software package, and many of its features are clearly elucidated. However, some other commerc...

  1. Quantifying uncertainty in stable isotope mixing models

    Science.gov (United States)

    Davis, Paul; Syme, James; Heikoop, Jeffrey; Fessenden-Rahn, Julianna; Perkins, George; Newman, Brent; Chrystal, Abbey E.; Hagerty, Shannon B.

    2015-05-01

    Mixing models are powerful tools for identifying biogeochemical sources and determining mixing fractions in a sample. However, identification of actual source contributors is often not simple, and source compositions typically vary or even overlap, significantly increasing model uncertainty in calculated mixing fractions. This study compares three probabilistic methods, Stable Isotope Analysis in R (SIAR), a pure Monte Carlo technique (PMC), and Stable Isotope Reference Source (SIRS) mixing model, a new technique that estimates mixing in systems with more than three sources and/or uncertain source compositions. In this paper, we use nitrate stable isotope examples (δ15N and δ18O) but all methods tested are applicable to other tracers. In Phase I of a three-phase blind test, we compared methods for a set of six-source nitrate problems. PMC was unable to find solutions for two of the target water samples. The Bayesian method, SIAR, experienced anchoring problems, and SIRS calculated mixing fractions that most closely approximated the known mixing fractions. For that reason, SIRS was the only approach used in the next phase of testing. In Phase II, the problem was broadened where any subset of the six sources could be a possible solution to the mixing problem. Results showed a high rate of Type I errors where solutions included sources that were not contributing to the sample. In Phase III some sources were eliminated based on assumed site knowledge and assumed nitrate concentrations, substantially reduced mixing fraction uncertainties and lowered the Type I error rate. These results demonstrate that valuable insights into stable isotope mixing problems result from probabilistic mixing model approaches like SIRS. The results also emphasize the importance of identifying a minimal set of potential sources and quantifying uncertainties in source isotopic composition as well as demonstrating the value of additional information in reducing the uncertainty in calculated

  2. Lagrangian mixing in an axisymmetric hurricane model

    Directory of Open Access Journals (Sweden)

    B. Rutherford

    2009-09-01

    Full Text Available This paper discusses the extension of established Lagrangian mixing measures to make them applicable to data extracted from a 2-D axisymmetric hurricane simulation. Because of the non-steady and unbounded characteristics of the simulation, the previous measures are extended to a moving frame approach to create time-dependent mixing rates that are dependent upon the initial time of particle integration, and are computed for nonlocal regions. The global measures of mixing derived from finite-time Lyapunov exponents, relative dispersion, and a measured mixing rate are applied to distinct regions representing different characteristic feautures within the model. It is shown that these time-dependent mixing rates exhibit correlations with maximal tangential winds during a quasi-steady state, establishing a connection between mixing and hurricane intensity.

  3. Mixed Self-adapting GA Optimal Scheduling Algorithm for a Multiple Resource Job-shop

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    With an aim at the job-shop scheduling problem of multiple resource constraints, this paper presents mixed self-adapting Genetic Algorithm (GA), and establishes a job-shop optimal scheduling model of multiple resource constraints based on the effect of priority scheduling rules in the heuristic algorithm upon the scheduling target. New coding regulations or rules are designed. The sinusoidal function is adopted as the self-adapting factor, thus making cross probability and variable probability automatically change with group adaptability in such a way as to overcome the shortcoming in the heuristic algorithm and common GA, so that the operation efficiency is improved. The results from real example simulation and comparison with other algorithms indicate that the mixed self-adapting GA algorithm can well solve the job-shop optimal scheduling problem under the constraints of various kinds of production resources such as machine-tools and cutting tools.

  4. Statistical Tests for Mixed Linear Models

    CERN Document Server

    Khuri, André I; Sinha, Bimal K

    2011-01-01

    An advanced discussion of linear models with mixed or random effects. In recent years a breakthrough has occurred in our ability to draw inferences from exact and optimum tests of variance component models, generating much research activity that relies on linear models with mixed and random effects. This volume covers the most important research of the past decade as well as the latest developments in hypothesis testing. It compiles all currently available results in the area of exact and optimum tests for variance component models and offers the only comprehensive treatment for these models a

  5. Multivariate generalized linear mixed models using R

    CERN Document Server

    Berridge, Damon Mark

    2011-01-01

    Multivariate Generalized Linear Mixed Models Using R presents robust and methodologically sound models for analyzing large and complex data sets, enabling readers to answer increasingly complex research questions. The book applies the principles of modeling to longitudinal data from panel and related studies via the Sabre software package in R. A Unified Framework for a Broad Class of Models The authors first discuss members of the family of generalized linear models, gradually adding complexity to the modeling framework by incorporating random effects. After reviewing the generalized linear model notation, they illustrate a range of random effects models, including three-level, multivariate, endpoint, event history, and state dependence models. They estimate the multivariate generalized linear mixed models (MGLMMs) using either standard or adaptive Gaussian quadrature. The authors also compare two-level fixed and random effects linear models. The appendices contain additional information on quadrature, model...

  6. Mixed-point geostatistical simulation: A combination of two- and multiple-point geostatistics

    Science.gov (United States)

    Cordua, Knud Skou; Hansen, Thomas Mejer; Gulbrandsen, Mats Lundh; Barnes, Christophe; Mosegaard, Klaus

    2016-09-01

    Multiple-point-based geostatistical methods are used to model complex geological structures. However, a training image containing the characteristic patterns of the Earth model has to be provided. If no training image is available, two-point (i.e., covariance-based) geostatistical methods are typically applied instead because these methods provide fewer constraints on the Earth model. This study is motivated by the case where 1-D vertical training images are available through borehole logs, whereas little or no information about horizontal dependencies exists. This problem is solved by developing theory that makes it possible to combine information from multiple- and two-point geostatistics for different directions, leading to a mixed-point geostatistical model. An example of combining information from the multiple-point-based single normal equation simulation algorithm and two-point-based sequential indicator simulation algorithm is provided. The mixed-point geostatistical model is used for conditional sequential simulation based on vertical training images from five borehole logs and a range parameter describing the horizontal dependencies.

  7. Flavor Mixing Phenomenology in Supersymmetric Models

    CERN Document Server

    Rehman, Muhammad

    2016-01-01

    This dissertation investigates the flavor mixing effects in supersymmetric models on electroweak precision observables, Higgs boson mass predictions, B-physics observables, quark flavor violating Higgs decays, lepton flavor violating charged lepton decays and lepton flavor violating Higgs decays. The flavor mixing effects are studied in model independent way i.e. by putting off-diagonal entries in the sfermion mass matrix by hand as well as in the minimal flavor violating constrained MSSM, where mixing can originate from CKM matrix in the case of squarks and from PMNS matrix in the case of sleptons. We found that flavor mixing can have large impact to some observables, enabling us to put new constraints on parameter space in supersymmetric models.

  8. Scotogenic model for co-bimaximal mixing

    CERN Document Server

    Ferreira, P M; Jurciukonis, D; Lavoura, L

    2016-01-01

    We present a scotogenic model, \\textit{i.e.}\\ a one-loop neutrino mass model with dark right-handed neutrino gauge singlets and one inert dark scalar gauge doublet $\\eta$, which has symmetries that lead to co-bimaximal mixing, \\textit{i.e.}\\ to an atmospheric mixing angle $\\theta_{23} = 45^\\circ$ and to a $CP$-violating phase $\\delta = \\pm \\pi/2$, while the mixing angle $\\theta_{13}$ remains arbitrary. The symmetries consist of softly broken lepton numbers $L_\\alpha$ ($\\alpha = e,\\mu,\\tau$), a non-standard $CP$ symmetry, and three $Z_2$ symmetries. We indicate two possibilities for extending the model to the quark sector. Since the model has, besides $\\eta$, three scalar gauge doublets, we perform a thorough discussion of its scalar sector. We demonstrate that it can accommodate a Standard Model-like scalar with mass $125\\, \\mathrm{GeV}$, with all the other charged and neutral scalars having much higher masses.

  9. Mixing model with multi-particle interactions for Lagrangian simulations of turbulent mixing

    Science.gov (United States)

    Watanabe, T.; Nagata, K.

    2016-08-01

    We report on the numerical study of the mixing volume model (MVM) for molecular diffusion in Lagrangian simulations of turbulent mixing problems. The MVM is based on the multi-particle interaction in a finite volume (mixing volume). A priori test of the MVM, based on the direct numerical simulations of planar jets, is conducted in the turbulent region and the interfacial layer between the turbulent and non-turbulent fluids. The results show that the MVM predicts well the mean effects of the molecular diffusion under various numerical and flow parameters. The number of the mixing particles should be large for predicting a value of the molecular diffusion term positively correlated to the exact value. The size of the mixing volume relative to the Kolmogorov scale η is important in the performance of the MVM. The scalar transfer across the turbulent/non-turbulent interface is well captured by the MVM especially with the small mixing volume. Furthermore, the MVM with multiple mixing particles is tested in the hybrid implicit large-eddy-simulation/Lagrangian-particle-simulation (LES-LPS) of the planar jet with the characteristic length of the mixing volume of O(100η). Despite the large mixing volume, the MVM works well and decays the scalar variance in a rate close to the reference LES. The statistics in the LPS are very robust to the number of the particles used in the simulations and the computational grid size of the LES. Both in the turbulent core region and the intermittent region, the LPS predicts a scalar field well correlated to the LES.

  10. Multiplicity description by gluon model

    CERN Document Server

    Kokoulina, E S

    2015-01-01

    Study of high multiplicity events in proton-proton interactions is carried out at the U-70 accelerator (IHEP, Protvino). These events are extremely rare. Usually, Monte Carlo codes underestimate topological cross sections in this region. The gluon dominance model (GDM) was offered to describe them. It is based on QCD and a phenomenological scheme of a hadronization stage. This model indicates a recombination mechanism of hadronization and a gluon fission. Future program of the SVD Collaboration is aimed at studying a long-standing puzzle of excess soft photon yield and its connection with high multiplicity at the U-70 and Nuclotron facility at JINR, Dubna.

  11. Mixed models theory and applications with R

    CERN Document Server

    Demidenko, Eugene

    2013-01-01

    Mixed modeling is one of the most promising and exciting areas of statistical analysis, enabling the analysis of nontraditional, clustered data that may come in the form of shapes or images. This book provides in-depth mathematical coverage of mixed models' statistical properties and numerical algorithms, as well as applications such as the analysis of tumor regrowth, shape, and image. The new edition includes significant updating, over 300 exercises, stimulating chapter projects and model simulations, inclusion of R subroutines, and a revised text format. The target audience continues to be g

  12. Modeling of Salt Solubilities in Mixed Solvents

    DEFF Research Database (Denmark)

    Chiavone-Filho, O.; Rasmussen, Peter

    2000-01-01

    A method to correlate and predict salt solubilities in mixed solvents using a UNIQUAC+Debye-Huckel model is developed. The UNIQUAC equation is applied in a form with temperature-dependent parameters. The Debye-Huckel model is extended to mixed solvents by properly evaluating the dielectric...... constants and the liquid densities of the solvent media. To normalize the activity coefficients, the symmetric convention is adopted. Thermochemical properties of the salt are used to estimate the solubility product. It is shown that the proposed procedure can describe with good accuracy a series of salt...

  13. Modeling of Salt Solubilities in Mixed Solvents

    DEFF Research Database (Denmark)

    Chiavone-Filho, O.; Rasmussen, Peter

    2000-01-01

    A method to correlate and predict salt solubilities in mixed solvents using a UNIQUAC+Debye-Huckel model is developed. The UNIQUAC equation is applied in a form with temperature-dependent parameters. The Debye-Huckel model is extended to mixed solvents by properly evaluating the dielectric...... constants and the liquid densities of the solvent media. To normalize the activity coefficients, the symmetric convention is adopted. Thermochemical properties of the salt are used to estimate the solubility product. It is shown that the proposed procedure can describe with good accuracy a series of salt...

  14. Cohesive mixed mode fracture modelling and experiments

    DEFF Research Database (Denmark)

    Walter, Rasmus; Olesen, John Forbes

    2008-01-01

    A nonlinear mixed mode model originally developed by Wernersson [Wernersson H. Fracture characterization of wood adhesive joints. Report TVSM-1006, Lund University, Division of Structural Mechanics; 1994], based on nonlinear fracture mechanics, is discussed and applied to model interfacial cracking...... in a steel–concrete interface. The model is based on the principles of Hillerborgs fictitious crack model, however, the Mode I softening description is modified taking into account the influence of shear. The model couples normal and shear stresses for a given combination of Mode I and II fracture...... curves, which may be interpreted using the nonlinear mixed mode model. The interpretation of test results is carried out in a two step inverse analysis applying numerical optimization tools. It is demonstrated how to perform the inverse analysis, which couples the assumed individual experimental load...

  15. Handbook of mixed membership models and their applications

    CERN Document Server

    Airoldi, Edoardo M; Erosheva, Elena A; Fienberg, Stephen E

    2014-01-01

    In response to scientific needs for more diverse and structured explanations of statistical data, researchers have discovered how to model individual data points as belonging to multiple groups. Handbook of Mixed Membership Models and Their Applications shows you how to use these flexible modeling tools to uncover hidden patterns in modern high-dimensional multivariate data. It explores the use of the models in various application settings, including survey data, population genetics, text analysis, image processing and annotation, and molecular biology.Through examples using real data sets, yo

  16. Multiple Model Approaches to Modelling and Control,

    DEFF Research Database (Denmark)

    Why Multiple Models?This book presents a variety of approaches which produce complex models or controllers by piecing together a number of simpler subsystems. Thisdivide-and-conquer strategy is a long-standing and general way of copingwith complexity in engineering systems, nature and human probl...

  17. Multivariate Generalized Linear Mixed Models Using R

    CERN Document Server

    Berridge, Damon M

    2011-01-01

    To provide researchers with the ability to analyze large and complex data sets using robust models, this book presents a unified framework for a broad class of models that can be applied using a dedicated R package (Sabre). The first five chapters cover the analysis of multilevel models using univariate generalized linear mixed models (GLMMs). The next few chapters extend to multivariate GLMMs and the last chapters address more specialized topics, such as parallel computing for large-scale analyses. Each chapter includes many real-world examples implemented using Sabre as well as exercises and

  18. Relating masses and mixing angles. A model-independent model

    Energy Technology Data Exchange (ETDEWEB)

    Hollik, Wolfgang Gregor [DESY, Hamburg (Germany); Saldana-Salazar, Ulises Jesus [CINVESTAV (Mexico)

    2016-07-01

    In general, mixing angles and fermion masses are seen to be independent parameters of the Standard Model. However, exploiting the observed hierarchy in the masses, it is viable to construct the mixing matrices for both quarks and leptons in terms of the corresponding mass ratios only. A closer view on the symmetry properties leads to potential realizations of that approach in extensions of the Standard Model. We discuss the application in the context of flavored multi-Higgs models.

  19. A Mathematical Calculation Model Using Biomarkers to Quantitatively Determine the Relative Source Proportion of Mixed Oils

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    It is difficult to identify the source(s) of mixed oils from multiple source rocks, and in particular the relative contribution of each source rock. Artificial mixing experiments using typical crude oils and ratios of different biomarkers show that the relative contribution changes are non-linear when two oils with different concentrations of biomarkers mix with each other. This may result in an incorrect conclusion if ratios of biomarkers and a simple binary linear equation are used to calculate the contribution proportion of each end-member to the mixed oil. The changes of biomarker ratios with the mixing proportion of end-member oils in the trinal mixing model are more complex than in the binary mixing model. When four or more oils mix, the contribution proportion of each end-member oil to the mixed oil cannot be calculated using biomarker ratios and a simple formula. Artificial mixing experiments on typical oils reveal that the absolute concentrations of biomarkers in the mixed oil cause a linear change with mixing proportion of each end-member. Mathematical inferences verify such linear changes. Some of the mathematical calculation methods using the absolute concentrations or ratios of biomarkers to quantitatively determine the proportion of each end-member in the mixed oils are deduced from the results of artificial experiments and by theoretical inference. Ratio of two biomarker compounds changes as a hyperbola with the mixing proportion in the binary mixing model,as a hyperboloid in the trinal mixing model, and as a hypersurface when mixing more than three endmembers. The mixing proportion of each end-member can be quantitatively determined with these mathematical models, using the absolute concentrations and the ratios of biomarkers. The mathematical calculation model is more economical, convenient, accurate and reliable than conventional artificial mixing methods.

  20. Improved testing inference in mixed linear models

    CERN Document Server

    Melo, Tatiane F N; Cribari-Neto, Francisco; 10.1016/j.csda.2008.12.007

    2011-01-01

    Mixed linear models are commonly used in repeated measures studies. They account for the dependence amongst observations obtained from the same experimental unit. Oftentimes, the number of observations is small, and it is thus important to use inference strategies that incorporate small sample corrections. In this paper, we develop modified versions of the likelihood ratio test for fixed effects inference in mixed linear models. In particular, we derive a Bartlett correction to such a test and also to a test obtained from a modified profile likelihood function. Our results generalize those in Zucker et al. (Journal of the Royal Statistical Society B, 2000, 62, 827-838) by allowing the parameter of interest to be vector-valued. Additionally, our Bartlett corrections allow for random effects nonlinear covariance matrix structure. We report numerical evidence which shows that the proposed tests display superior finite sample behavior relative to the standard likelihood ratio test. An application is also presente...

  1. Observation of Optical Undular Bores in Multiple Four-Wave Mixing

    National Research Council Canada - National Science Library

    Fatome, J; Finot, C; Millot, G; Armaroli, A; Trillo, S

    2014-01-01

    ... (strong multiple four-wave mixing). In particular, by exploiting an all-optical-fiber platform, we show that input modulations propagating in standard telecom fibers in the regime of weak normal dispersion lead to the formation of undular bores...

  2. Configuration mixing calculations in soluble models

    Science.gov (United States)

    Cambiaggio, M. C.; Plastino, A.; Szybisz, L.; Miller, H. G.

    1983-07-01

    Configuration mixing calculations have been performed in two quasi-spin models using basis states which are solutions of a particular set of Hartree-Fock equations. Each of these solutions, even those which do not correspond to the global minimum, is found to contain interesting physical information. Relatively good agreement with the exact lowest-lying states has been obtained. In particular, one obtains a better approximation to the ground state than that provided by Hartree-Fock.

  3. CFD Modeling of Mixed-Phase Icing

    Science.gov (United States)

    Zhang, Lifen; Liu, Zhenxia; Zhang, Fei

    2016-12-01

    Ice crystal ingestion at high altitude has been reported to be a threat for safe operation of aero-engine in recently. Ice crystals do not accrete on external surface because of cold environment. But when they enter the core flow of aero-engine, ice crystals melt partially into droplets due to higher temperature. Air-droplets-ice crystal is the mixed-phase, which will give rise to ice accretion on static and rotating components in compressor. Subsequently, compressor surge and engine shutdowns may occur. To provide a numerical tool to analyze this in detail, a numerical method was developed in this study. The mixed phase flow was solved using Eulerian-Lagrangian method. The dispersed phase was represented by one-way coupling. A thermodynamic model that considers mass and energy balance with ice crystals and droplets was presented as well. The icing code was implemented by the user-defined function of Fluent. The method of ice accretion under mixed-phase conditions was validated by comparing the results simulated on a cylinder with experimental data derived from literature. The predicted ice shape and mass agree with these data, thereby confirming the validity of the numerical method developed in this research for mixed-phase conditions.

  4. Experimental study of a multiplicative model of multiple ionospheric reflections

    Science.gov (United States)

    Mirkotan, S. F.; Zhuravlev, S. V.; Kosovtsov, Iu. N.

    1983-04-01

    An important parameter of a partially scattered ionospheric signal is the signal-noise energy parameter beta. A new method for determining beta sub n (where n is the multiplicity of reflection) has been proposed on the basis of the statistical multiplicative model of Mirkotan et al. (1981, 1982). This paper describes an experimental verification of the proposed method; data on beta sub n obtained by the traditional method and by the new method are compared. In addition, the validity of the multiplicative model is evaluated, and features of the mechanism responsible for the multiple scattering of an ionospheric signal are examined.

  5. Neutrino Mixing Discriminates Geo-reactor Models

    CERN Document Server

    Dye, S T

    2009-01-01

    Geo-reactor models suggest the existence of natural nuclear reactors at different deep-earth locations with loosely defined output power. Reactor fission products undergo beta decay with the emission of electron antineutrinos, which routinely escape the earth. Neutrino mixing distorts the energy spectrum of the electron antineutrinos. Characteristics of the distorted spectrum observed at the earth's surface could specify the location of a geo-reactor, discriminating the models and facilitating more precise power measurement. The existence of a geo-reactor with known position could enable a precision measurement of the neutrino oscillation parameter delta-mass-squared.

  6. MHD Turbulent Mixing Layers: Equilibrium Cooling Models

    CERN Document Server

    Esquivel, A; Cho, J; Lazarian, A; Leitner, S N

    2006-01-01

    We present models of turbulent mixing at the boundaries between hot (T~10^{6-7} K) and warm material (T~10^4 K) in the interstellar medium, using a three-dimensional magnetohydrodynamical code, with radiative cooling. The source of turbulence in our simulations is a Kelvin-Helmholtz instability, produced by shear between the two media. We found, that because the growth rate of the large scale modes in the instability is rather slow, it takes a significant amount of time (~1 Myr) for turbulence to produce effective mixing. We find that the total column densities of the highly ionized species (C IV, N V, and O VI) per interface (assuming ionization equilibrium) are similar to previous steady-state non-equilibrium ionization models, but grow slowly from log N ~10^{11} to a few 10^{12} cm^{-2} as the interface evolves. However, the column density ratios can differ significantly from previous estimates, with an order of magnitude variation in N(C IV)/N(O VI) as the mixing develops.

  7. Mixed Methods: Incorporating multiple learning styles into a measurements course

    Science.gov (United States)

    Pallone, Arthur

    2010-03-01

    The best scientists and engineers regularly combine creative and critical skill sets. As faculty, we are responsible to provide future scientists and engineers with those skills sets. EGR 390: Engineering Measurements at Murray State University is structured to actively engage students in the processes that develop and enhance those skills. Students learn through a mix of traditional lecture and homework, active discussion of open-ended questions, small group activities, structured laboratory exercises, oral and written communications exercises, student chosen team projects, and peer evaluations. Examples of each of these activities, the skill set addressed by each activity, outcomes from and effectiveness of each activity and recommendations for future directions in the EGR 390 course as designed will be presented.

  8. A model of quark and lepton mixing

    Energy Technology Data Exchange (ETDEWEB)

    King, Stephen F. [School of Physics and Astronomy, University of Southampton,Southampton, SO17 1BJ (United Kingdom)

    2014-01-22

    We propose a model of quark and lepton mixing based on the tetrahedral A{sub 4} family symmetry with quark-lepton unification via the tetra-colour Pati-Salam gauge group SU(4){sub PS}, together with SU(2){sub L}×U(1){sub R}. The “tetra-model” solves many of the flavour puzzles and remarkably gives ten predictions at leading order, including all six PMNS parameters. The Cabibbo angle is approximately given by θ{sub C}≈1/4, due to the tetra-vacuum alignment (1,4,2), providing the Cabibbo connection between quark and lepton mixing. Higher order corrections are responsible for the smaller quark mixing angles and CP violation and provide corrections to the Cabibbo and lepton mixing angles and phases. The tetra-model involves an SO(10)-like pattern of Dirac and heavy right-handed neutrino masses, with the strong up-type quark mass hierarchy cancelling in the see-saw mechanism, leading to a normal hierarchy of neutrino masses with an atmospheric angle in the first octant, θ{sub 23}{sup l}=40{sup ∘}±1{sup ∘}, a solar angle θ{sub 12}{sup l}=34{sup ∘}±1{sup ∘}, a reactor angle θ{sub 13}{sup l}=9.0{sup ∘}±0.5{sup ∘}, depending on the ratio of neutrino masses m{sub 2}/m{sub 3}, and a Dirac CP violating oscillation phase δ{sup l}=260{sup ∘}±5{sup ∘}.

  9. Toward Better Modeling of Supercritical Turbulent Mixing

    Science.gov (United States)

    Selle, Laurent; Okongo'o, Nora; Bellan, Josette; Harstad, Kenneth

    2008-01-01

    study was done as part of an effort to develop computational models representing turbulent mixing under thermodynamic supercritical (here, high pressure) conditions. The question was whether the large-eddy simulation (LES) approach, developed previously for atmospheric-pressure compressible-perfect-gas and incompressible flows, can be extended to real-gas non-ideal (including supercritical) fluid mixtures. [In LES, the governing equations are approximated such that the flow field is spatially filtered and subgrid-scale (SGS) phenomena are represented by models.] The study included analyses of results from direct numerical simulation (DNS) of several such mixing layers based on the Navier-Stokes, total-energy, and conservation- of-chemical-species governing equations. Comparison of LES and DNS results revealed the need to augment the atmospheric- pressure LES equations with additional SGS momentum and energy terms. These new terms are the direct result of high-density-gradient-magnitude regions found in the DNS and observed experimentally under fully turbulent flow conditions. A model has been derived for the new term in the momentum equation and was found to perform well at small filter size but to deteriorate with increasing filter size. Several alternative models were derived for the new SGS term in the energy equation that would need further investigations to determine if they are too computationally intensive in LES.

  10. Introduction to mixed modelling beyond regression and analysis of variance

    CERN Document Server

    Galwey, N W

    2007-01-01

    Mixed modelling is one of the most promising and exciting areas of statistical analysis, enabling more powerful interpretation of data through the recognition of random effects. However, many perceive mixed modelling as an intimidating and specialized technique.

  11. Mixing parameterizations in ocean climate modeling

    Science.gov (United States)

    Moshonkin, S. N.; Gusev, A. V.; Zalesny, V. B.; Byshev, V. I.

    2016-03-01

    Results of numerical experiments with an eddy-permitting ocean circulation model on the simulation of the climatic variability of the North Atlantic and the Arctic Ocean are analyzed. We compare the ocean simulation quality with using different subgrid mixing parameterizations. The circulation model is found to be sensitive to a mixing parametrization. The computation of viscosity and diffusivity coefficients by an original splitting algorithm of the evolution equations for turbulence characteristics is found to be as efficient as traditional Monin-Obukhov parameterizations. At the same time, however, the variability of ocean climate characteristics is simulated more adequately. The simulation of salinity fields in the entire study region improves most significantly. Turbulent processes have a large effect on the circulation in the long-term through changes in the density fields. The velocity fields in the Gulf Stream and in the entire North Atlantic Subpolar Cyclonic Gyre are reproduced more realistically. The surface level height in the Arctic Basin is simulated more faithfully, marking the Beaufort Gyre better. The use of the Prandtl number as a function of the Richardson number improves the quality of ocean modeling.

  12. A mixed methods study of multiple health behaviors among individuals with stroke

    Directory of Open Access Journals (Sweden)

    Matthew Plow

    2017-05-01

    Full Text Available Background Individuals with stroke often have multiple cardiovascular risk factors that necessitate promoting engagement in multiple health behaviors. However, observational studies of individuals with stroke have typically focused on promoting a single health behavior. Thus, there is a poor understanding of linkages between healthy behaviors and the circumstances in which factors, such as stroke impairments, may influence a single or multiple health behaviors. Methods We conducted a mixed methods convergent parallel study of 25 individuals with stroke to examine the relationships between stroke impairments and physical activity, sleep, and nutrition. Our goal was to gain further insight into possible strategies to promote multiple health behaviors among individuals with stroke. This study focused on physical activity, sleep, and nutrition because of their importance in achieving energy balance, maintaining a healthy weight, and reducing cardiovascular risks. Qualitative and quantitative data were collected concurrently, with the former being prioritized over the latter. Qualitative data was prioritized in order to develop a conceptual model of engagement in multiple health behaviors among individuals with stroke. Qualitative and quantitative data were analyzed independently and then were integrated during the inference stage to develop meta-inferences. The 25 individuals with stroke completed closed-ended questionnaires on healthy behaviors and physical function. They also participated in face-to-face focus groups and one-to-one phone interviews. Results We found statistically significant and moderate correlations between hand function and healthy eating habits (r = 0.45, sleep disturbances and limitations in activities of daily living (r =  − 0.55, BMI and limitations in activities of daily living (r =  − 0.49, physical activity and limitations in activities of daily living (r = 0.41, mobility impairments and BMI (r

  13. Mixing parametrizations for ocean climate modelling

    Science.gov (United States)

    Gusev, Anatoly; Moshonkin, Sergey; Diansky, Nikolay; Zalesny, Vladimir

    2016-04-01

    The algorithm is presented of splitting the total evolutionary equations for the turbulence kinetic energy (TKE) and turbulence dissipation frequency (TDF), which is used to parameterize the viscosity and diffusion coefficients in ocean circulation models. The turbulence model equations are split into the stages of transport-diffusion and generation-dissipation. For the generation-dissipation stage, the following schemes are implemented: the explicit-implicit numerical scheme, analytical solution and the asymptotic behavior of the analytical solutions. The experiments were performed with different mixing parameterizations for the modelling of Arctic and the Atlantic climate decadal variability with the eddy-permitting circulation model INMOM (Institute of Numerical Mathematics Ocean Model) using vertical grid refinement in the zone of fully developed turbulence. The proposed model with the split equations for turbulence characteristics is similar to the contemporary differential turbulence models, concerning the physical formulations. At the same time, its algorithm has high enough computational efficiency. Parameterizations with using the split turbulence model make it possible to obtain more adequate structure of temperature and salinity at decadal timescales, compared to the simpler Pacanowski-Philander (PP) turbulence parameterization. Parameterizations with using analytical solution or numerical scheme at the generation-dissipation step of the turbulence model leads to better representation of ocean climate than the faster parameterization using the asymptotic behavior of the analytical solution. At the same time, the computational efficiency left almost unchanged relative to the simple PP parameterization. Usage of PP parametrization in the circulation model leads to realistic simulation of density and circulation with violation of T,S-relationships. This error is majorly avoided with using the proposed parameterizations containing the split turbulence model

  14. Mixed Models: Combining Incompatible Scalar Models in Any Spacetime Dimension

    CERN Document Server

    Klauder, John R

    2016-01-01

    Traditionally, covariant scalar field theory models are either super renormalizable, strictly renormalizable, or nonrenormalizable. The goal of `Mixed Models' is to make sense of sums of these distinct examples, e.g., $g\\varphi^4_3+g'\\varphi^6_3+g''\\varphi^8_3$, which includes an example of each kind for spacetime dimension $n=3$. We show how the several interactions such mixed models have may be turned on and off in any order without any difficulties. Analogous results are shown for $g\\varphi^4_n+g'\\varphi^{138}_n$, etc., for all $n\\ge3$. Different categories hold for $n=2$ such as, e.g., ${g P(\\varphi)_2+g' N\\!P}(\\varphi)_2$, that involve polynomial ($P$) and suitable nonpolynomial ($N\\!P$) interactions, etc. Analogous situations for $n=1$ (time alone) offer simple `toy' examples of how such mixed models may be constructed.

  15. Forecasting Exchange Rates with Mixed Models

    Directory of Open Access Journals (Sweden)

    Laura Maria Badea

    2013-06-01

    Full Text Available Gaining accuracy in exchange rate forecasting applications provides true benefits for financial activities. Supported today by the advancements in computing power, machine learning techniques provide good alternatives to traditional time series estimation methods. Very approached in time series forecasting are Artificial Neural Networks (ANNs which offer robust results and allow a flexible data manipulation. When integrating both, the “white-box” feature of conventional methods and the complexity of machine learning techniques, forecasting models perform even better in terms of generated errors. In this study, input variables (independent variables are selected using an ARIMA technique and are further employed in differently configured multilayered feed-forward neural networks using Broyden-Fletcher-Goldfarb-Shanno (BFGS optimization algorithm to perform predictions on EUR/RON and CHF/RON exchange rates. Results in terms of mean squared error highlight good results when using mixed models.

  16. Mixed models in cerebral ischemia study

    Directory of Open Access Journals (Sweden)

    Matheus Henrique Dal Molin Ribeiro

    2016-06-01

    Full Text Available The data modeling from longitudinal studies stands out in the current scientific scenario, especially in the areas of health and biological sciences, which induces a correlation between measurements for the same observed unit. Thus, the modeling of the intra-individual dependency is required through the choice of a covariance structure that is able to receive and accommodate the sample variability. However, the lack of methodology for correlated data analysis may result in an increased occurrence of type I or type II errors and underestimate/overestimate the standard errors of the model estimates. In the present study, a Gaussian mixed model was adopted for the variable response latency of an experiment investigating the memory deficits in animals subjected to cerebral ischemia when treated with fish oil (FO. The model parameters estimation was based on maximum likelihood methods. Based on the restricted likelihood ratio test and information criteria, the autoregressive covariance matrix was adopted for errors. The diagnostic analyses for the model were satisfactory, since basic assumptions and results obtained corroborate with biological evidence; that is, the effectiveness of the FO treatment to alleviate the cognitive effects caused by cerebral ischemia was found.

  17. Numerical modeling of two-phase binary fluid mixing using mixed finite elements

    KAUST Repository

    Sun, Shuyu

    2012-07-27

    Diffusion coefficients of dense gases in liquids can be measured by considering two-phase binary nonequilibrium fluid mixing in a closed cell with a fixed volume. This process is based on convection and diffusion in each phase. Numerical simulation of the mixing often requires accurate algorithms. In this paper, we design two efficient numerical methods for simulating the mixing of two-phase binary fluids in one-dimensional, highly permeable media. Mathematical model for isothermal compositional two-phase flow in porous media is established based on Darcy\\'s law, material balance, local thermodynamic equilibrium for the phases, and diffusion across the phases. The time-lag and operator-splitting techniques are used to decompose each convection-diffusion equation into two steps: diffusion step and convection step. The Mixed finite element (MFE) method is used for diffusion equation because it can achieve a high-order and stable approximation of both the scalar variable and the diffusive fluxes across grid-cell interfaces. We employ the characteristic finite element method with moving mesh to track the liquid-gas interface. Based on the above schemes, we propose two methods: single-domain and two-domain methods. The main difference between two methods is that the two-domain method utilizes the assumption of sharp interface between two fluid phases, while the single-domain method allows fractional saturation level. Two-domain method treats the gas domain and the liquid domain separately. Because liquid-gas interface moves with time, the two-domain method needs work with a moving mesh. On the other hand, the single-domain method allows the use of a fixed mesh. We derive the formulas to compute the diffusive flux for MFE in both methods. The single-domain method is extended to multiple dimensions. Numerical results indicate that both methods can accurately describe the evolution of the pressure and liquid level. © 2012 Springer Science+Business Media B.V.

  18. Multiple-image encryption algorithm based on mixed image element and permutation

    Science.gov (United States)

    Zhang, Xiaoqiang; Wang, Xuesong

    2017-05-01

    To improve encryption efficiency and facilitate the secure transmission of multiple digital images, by defining the pure image element and mixed image element, this paper presents a new multiple-image encryption (MIE) algorithm based on the mixed image element and permutation, which can simultaneously encrypt any number of images. Firstly, segment the original images into pure image elements; secondly, scramble all the pure image elements with the permutation generated by the piecewise linear chaotic map (PWLCM) system; thirdly, combine mixed image elements into scrambled images; finally, diffuse the content of mixed image elements by performing the exclusive OR (XOR) operation among scrambled images and the chaotic image generated by another PWLCM system. The comparison with two similar algorithms is made. Experimental results and algorithm analyses show that the proposed MIE algorithm is very simple and efficient, which is suitable for practical image encryption.

  19. Nonequilibrium antiferromagnetic mixed-spin Ising model.

    Science.gov (United States)

    Godoy, Mauricio; Figueiredo, Wagner

    2002-09-01

    We studied an antiferromagnetic mixed-spin Ising model on the square lattice subject to two competing stochastic processes. The model system consists of two interpenetrating sublattices of spins sigma=1/2 and S=1, and we take only nearest neighbor interactions between pairs of spins. The system is in contact with a heat bath at temperature T, and the exchange of energy with the heat bath occurs via one-spin flip (Glauber dynamics). Besides, the system interacts with an external agency of energy, which supplies energy to it whenever two nearest neighboring spins are simultaneously flipped. By employing Monte Carlo simulations and a dynamical pair approximation, we found the phase diagram for the stationary states of the model in the plane temperature T versus the competition parameter between one- and two-spin flips p. We observed the appearance of three distinct phases, that are separated by continuous transition lines. We also determined the static critical exponents along these lines and we showed that this nonequilibrium model belongs to the universality class of the two-dimensional equilibrium Ising model.

  20. Flow of granular matter in a silo with multiple exit orifices: Jamming to mixing

    Science.gov (United States)

    Kamath, Sandesh; Kunte, Amit; Doshi, Pankaj; Orpe, Ashish V.

    2014-12-01

    We investigate the mixing characteristics of dry granular material while draining down a silo with multiple exit orifices. The mixing in the silo, which otherwise consists of noninteracting stagnant and flowing regions, is observed to improve significantly when the flow through specific orifices is stopped intermittently. This momentary stoppage of flow through the orifice is either controlled manually or is chosen by the system itself when the orifice width is small enough to cause spontaneous jamming and unjamming. We observe that the overall mixing behavior shows a systematic dependence on the frequency of closing and opening of specific orifices. In particular, the silo configuration employing random jamming and unjamming of any of the orifices shows early evidence of chaotic mixing. When operated in a multipass mode, the system exhibits a practical and efficient way of mixing particles.

  1. Multiple scattering Model in GEANT4

    CERN Document Server

    Urbàn, L

    2002-01-01

    We present a new multiple scattering (MSC) model to simulate the multiple scattering of charged particles in matter. This model does not use the Moliere formalism, it is based on the more complete Lewis theory. The model simulates the scattering of the particle after a given step, computes the path length correction and the lateral displacement as well.

  2. Prediction of microbial growth in mixed culture with a competition model.

    Science.gov (United States)

    Fujikawa, Hiroshi; Sakha, Mohammad Z

    2014-01-01

    Prediction of microbial growth in mixed culture was studied with a competition model that we had developed recently. The model, which is composed of the new logistic model and the Lotka-Volterra model, is shown to successfully describe the microbial growth of two species in mixed culture using Staphylococcus aureus, Escherichia coli, and Salmonella. With the parameter values of the model obtained from the experimental data on monoculture and mixed culture with two species, it then succeeded in predicting the simultaneous growth of the three species in mixed culture inoculated with various cell concentrations. To our knowledge, it is the first time for a prediction model for multiple (three) microbial species to be reported. The model, which is not built on any premise for specific microorganisms, may become a basic competition model for microorganisms in food and food materials.

  3. Mixed-model Regression for Variable-star Photometry

    Science.gov (United States)

    Dose, Eric

    2016-05-01

    Mixed-model regression, a recent advance from social-science statistics, applies directly to reducing one night's photometric raw data, especially for variable stars in fields with multiple comparison stars. One regression model per filter/passband yields any or all of: transform values, extinction values, nightly zero-points, rapid zero-point fluctuations ("cirrus effect"), ensemble comparisons, vignette and gradient removal arising from incomplete flat-correction, check-star and target-star magnitudes, and specific indications of unusually large catalog magnitude errors. When images from several different fields of view are included, the models improve without complicating the calculations. The mixed-model approach is generally robust to outliers and missing data points, and it directly yields 14 diagnostic plots, used to monitor data set quality and/or residual systematic errors - these diagnostic plots may in fact turn out to be the prime advantage of this approach. Also presented is initial work on a split-annulus approach to sky background estimation, intended to address the sensitivity of photometric observations to noise within the sky-background annulus.

  4. Estimation of growth parameters using a nonlinear mixed Gompertz model.

    Science.gov (United States)

    Wang, Z; Zuidhof, M J

    2004-06-01

    In order to maximize the utility of simulation models for decision making, accurate estimation of growth parameters and associated variances is crucial. A mixed Gompertz growth model was used to account for between-bird variation and heterogeneous variance. The mixed model had several advantages over the fixed effects model. The mixed model partitioned BW variation into between- and within-bird variation, and the covariance structure assumed with the random effect accounted for part of the BW correlation across ages in the same individual. The amount of residual variance decreased by over 55% with the mixed model. The mixed model reduced estimation biases that resulted from selective sampling. For analysis of longitudinal growth data, the mixed effects growth model is recommended.

  5. Modeling Multiple Causes of Carcinogenesis

    Energy Technology Data Exchange (ETDEWEB)

    Jones, T D

    1999-01-24

    An array of epidemiological results and databases on test animal indicate that risk of cancer and atherosclerosis can be up- or down-regulated by diet through a range of 200%. Other factors contribute incrementally and include the natural terrestrial environment and various human activities that jointly produce complex exposures to endotoxin-producing microorganisms, ionizing radiations, and chemicals. Ordinary personal habits and simple physical irritants have been demonstrated to affect the immune response and risk of disease. There tends to be poor statistical correlation of long-term risk with single agent exposures incurred throughout working careers. However, Agency recommendations for control of hazardous exposures to humans has been substance-specific instead of contextually realistic even though there is consistent evidence for common mechanisms of toxicological and carcinogenic action. That behavior seems to be best explained by molecular stresses from cellular oxygen metabolism and phagocytosis of antigenic invasion as well as breakdown of normal metabolic compounds associated with homeostatic- and injury-related renewal of cells. There is continually mounting evidence that marrow stroma, comprised largely of monocyte-macrophages and fibroblasts, is important to phagocytic and cytokinetic response, but the complex action of the immune process is difficult to infer from first-principle logic or biomarkers of toxic injury. The many diverse database studies all seem to implicate two important processes, i.e., the univalent reduction of molecular oxygen and breakdown of aginuine, an amino acid, by hydrolysis or digestion of protein which is attendant to normal antigen-antibody action. This behavior indicates that protection guidelines and risk coefficients should be context dependent to include reference considerations of the composite action of parameters that mediate oxygen metabolism. A logic of this type permits the realistic common-scale modeling of

  6. Determination of useful ranges of mixing conditions for glycerin Fatty Acid ester by multiple regression analysis.

    Science.gov (United States)

    Uchimoto, Takeaki; Iwao, Yasunori; Hattori, Hiroaki; Noguchi, Shuji; Itai, Shigeru

    2013-01-01

    The interaction of the effects of the triglycerin full behenate (TR-FB) concentration and the mixing time on lubrication and tablet properties were analyzed under a two-factor central composite design, and compared with those of magnesium stearate (Mg-St). Various amounts of lubricant (0.07-3.0%) were added to granules and mixed for 1-30 min. A multiple linear regression analysis was performed to identify the effect of the mixing conditions on each physicochemical property. The mixing conditions did not significantly affect the lubrication properties of TR-FB. For tablet properties, tensile strength decreased and disintegration time increased when the lubricant concentration and the mixing time were increased for Mg-St. The direct interaction of the Mg-St concentration and the mixing time had a significant negative effect on the disintegration time. In contrast, any mixing conditions of TR-FB did not affect the tablet properties. In addition, the range of mixing conditions which satisfied the lubrication and tablet property criteria was broader for TR-FB than that for Mg-St, suggesting that TR-FB allows tablets with high quality attributes to be produced consistently. Therefore, TR-FB is a potential lubricant alternative to Mg-St.

  7. A Mixed Integer Linear Program for Solving a Multiple Route Taxi Scheduling Problem

    Science.gov (United States)

    Montoya, Justin Vincent; Wood, Zachary Paul; Rathinam, Sivakumar; Malik, Waqar Ahmad

    2010-01-01

    Aircraft movements on taxiways at busy airports often create bottlenecks. This paper introduces a mixed integer linear program to solve a Multiple Route Aircraft Taxi Scheduling Problem. The outputs of the model are in the form of optimal taxi schedules, which include routing decisions for taxiing aircraft. The model extends an existing single route formulation to include routing decisions. An efficient comparison framework compares the multi-route formulation and the single route formulation. The multi-route model is exercised for east side airport surface traffic at Dallas/Fort Worth International Airport to determine if any arrival taxi time savings can be achieved by allowing arrivals to have two taxi routes: a route that crosses an active departure runway and a perimeter route that avoids the crossing. Results indicate that the multi-route formulation yields reduced arrival taxi times over the single route formulation only when a perimeter taxiway is used. In conditions where the departure aircraft are given an optimal and fixed takeoff sequence, accumulative arrival taxi time savings in the multi-route formulation can be as high as 3.6 hours more than the single route formulation. If the departure sequence is not optimal, the multi-route formulation results in less taxi time savings made over the single route formulation, but the average arrival taxi time is significantly decreased.

  8. Cabibbo Mixing in Superstring Derived Standard--like Models

    CERN Document Server

    Faraggi, A E; Faraggi, Alon E.; Halyo, Edi

    1993-01-01

    We examine the problem of generation mixing in realistic superstring derived standard--like models, constructed in the free fermionic formulation. We study the possible sources of family mixing in these models . In a specific model we estimate the Cabibbo angle. We argue that a Cabibbo angle of the correct order of magnitude can be obtained in these models.

  9. On Local Homogeneity and Stochastically Ordered Mixed Rasch Models

    Science.gov (United States)

    Kreiner, Svend; Hansen, Mogens; Hansen, Carsten Rosenberg

    2006-01-01

    Mixed Rasch models add latent classes to conventional Rasch models, assuming that the Rasch model applies within each class and that relative difficulties of items are different in two or more latent classes. This article considers a family of stochastically ordered mixed Rasch models, with ordinal latent classes characterized by increasing total…

  10. Multiple Imputation Strategies for Multiple Group Structural Equation Models

    Science.gov (United States)

    Enders, Craig K.; Gottschall, Amanda C.

    2011-01-01

    Although structural equation modeling software packages use maximum likelihood estimation by default, there are situations where one might prefer to use multiple imputation to handle missing data rather than maximum likelihood estimation (e.g., when incorporating auxiliary variables). The selection of variables is one of the nuances associated…

  11. Modeling and Reconstruction of Mixed Functional and Molecular Patterns

    Directory of Open Access Journals (Sweden)

    2006-01-01

    Full Text Available Functional medical imaging promises powerful tools for the visualization and elucidation of important disease-causing biological processes in living tissue. Recent research aims to dissect the distribution or expression of multiple biomarkers associated with disease progression or response, where the signals often represent a composite of more than one distinct source independent of spatial resolution. Formulating the task as a blind source separation or composite signal factorization problem, we report here a statistically principled method for modeling and reconstruction of mixed functional or molecular patterns. The computational algorithm is based on a latent variable model whose parameters are estimated using clustered component analysis. We demonstrate the principle and performance of the approaches on the breast cancer data sets acquired by dynamic contrast-enhanced magnetic resonance imaging.

  12. Dynamical modelling of coordinated multiple robot systems

    Science.gov (United States)

    Hayati, Samad

    1987-01-01

    The state of the art in the modeling of the dynamics of coordinated multiple robot manipulators is summarized and various problems related to this subject are discussed. It is recognized that dynamics modeling is a component used in the design of controllers for multiple cooperating robots. As such, the discussion addresses some problems related to the control of multiple robots. The techniques used to date in the modeling of closed kinematic chains are summarized. Various efforts made to date for the control of coordinated multiple manipulators is summarized.

  13. Multiple Realities: A Relationship Narrative Approach in Therapy with Black-White Mixed-Race Clients.

    Science.gov (United States)

    Rockquemore, Kerry Ann; Laszloffy, Tracey A.

    2003-01-01

    Emerging empirical research on racial identity formation among persons with one Black and one White parent reveals that multiple identity options are possible. Presents a relational narrative approach to therapy with Black-White mixed-race clients who experience systematic invalidation of their chosen racial identity through a detailed case…

  14. Multiple four-wave mixing and Kerr combs in a bichromatically pumped nonlinear fiber ring cavity.

    Science.gov (United States)

    Ceoldo, D; Bendahmane, A; Fatome, J; Millot, G; Hansson, T; Modotto, D; Wabnitz, S; Kibler, B

    2016-12-01

    We report numerical and experimental studies of multiple four-wave mixing processes emerging from dual-frequency pumping of a passive nonlinear fiber ring cavity. We observe the formation of a periodic train of nearly background-free soliton pulses associated with Kerr frequency combs. The generation of resonant dispersive waves is also reported.

  15. A Bayesian Missing Data Framework for Generalized Multiple Outcome Mixed Treatment Comparisons

    Science.gov (United States)

    Hong, Hwanhee; Chu, Haitao; Zhang, Jing; Carlin, Bradley P.

    2016-01-01

    Bayesian statistical approaches to mixed treatment comparisons (MTCs) are becoming more popular because of their flexibility and interpretability. Many randomized clinical trials report multiple outcomes with possible inherent correlations. Moreover, MTC data are typically sparse (although richer than standard meta-analysis, comparing only two…

  16. Blind channel identication of nonlinear folding mixing model

    Institute of Scientific and Technical Information of China (English)

    Su Yong; Xu Shangzhi; Ye Zhongfu

    2006-01-01

    Signals from multi-sensor systems are often mixtures of (statistically) independent sources by unknown mixing method. Blind source separation(BSS) and independent component analysis(ICA) are the methods to identify/recover the channels and the sources. BSS/ICA of nonlinear mixing models are difficult problems. For instance, the post-nonlinear model has been studied by several authors. It is noticed that in most cases, the proposed models are always with an invertible mixing. According to this fact there is an interesting question: how about the situation of the non-invertible non-linear mixing in BSS or ICA? A new simple non-linear mixing model is proposed with a kind of non-invertible mixing, the folding mixing, and method to identify its channel, blindly.

  17. PCR-Based Multiple Species Cell Counting for In Vitro Mixed Culture.

    Directory of Open Access Journals (Sweden)

    Ruijie Huang

    Full Text Available Changes of bacterial profiles in microbial communities are strongly associated with human health. There is an increasing need for multiple species research in vitro. To avoid high cost or measurement of a limited number of species, PCR-based multiple species cell counting (PCR-MSCC has been conceived. Species-specific sequence is defined as a unique sequence of one species in a multiple species mixed culture. This sequence is identified by comparing a random 1000 bp genomic sequence of one species with the whole genome sequences of the other species in the same artificial mixed culture. If absent in the other genomes, it is the species-specific sequence. Species-specific primers were designed based on the species-specific sequences. In the present study, ten different oral bacterial species were mixed and grown in Brain Heart Infusion Yeast Extract with 1% sucrose for 24 hours. Biofilm was harvested and processed for DNA extraction and q-PCR amplification with the species-specific primers. By comparing the q-PCR data of each species in the unknown culture with reference cultures, in which the cell number of each species was determined by colony forming units on agar plate, the cell number of that strain in the unknown mixed culture was calculated. This technique is reliable to count microorganism numbers that are less than 100,000 fold different from other species within the same culture. Theoretically, it can be used in detecting a species in a mixed culture of over 200 species. Currently PCR-MSCC is one of the most economic methods for quantifying single species cell numbers, especially for the low abundant species, in a multiple artificial mixed culture in vitro.

  18. PCR-Based Multiple Species Cell Counting for In Vitro Mixed Culture.

    Science.gov (United States)

    Huang, Ruijie; Zhang, Junjie; Yang, X Frank; Gregory, Richard L

    2015-01-01

    Changes of bacterial profiles in microbial communities are strongly associated with human health. There is an increasing need for multiple species research in vitro. To avoid high cost or measurement of a limited number of species, PCR-based multiple species cell counting (PCR-MSCC) has been conceived. Species-specific sequence is defined as a unique sequence of one species in a multiple species mixed culture. This sequence is identified by comparing a random 1000 bp genomic sequence of one species with the whole genome sequences of the other species in the same artificial mixed culture. If absent in the other genomes, it is the species-specific sequence. Species-specific primers were designed based on the species-specific sequences. In the present study, ten different oral bacterial species were mixed and grown in Brain Heart Infusion Yeast Extract with 1% sucrose for 24 hours. Biofilm was harvested and processed for DNA extraction and q-PCR amplification with the species-specific primers. By comparing the q-PCR data of each species in the unknown culture with reference cultures, in which the cell number of each species was determined by colony forming units on agar plate, the cell number of that strain in the unknown mixed culture was calculated. This technique is reliable to count microorganism numbers that are less than 100,000 fold different from other species within the same culture. Theoretically, it can be used in detecting a species in a mixed culture of over 200 species. Currently PCR-MSCC is one of the most economic methods for quantifying single species cell numbers, especially for the low abundant species, in a multiple artificial mixed culture in vitro.

  19. Application of a mixed DEA model to evaluate relative efficiency validity

    Institute of Scientific and Technical Information of China (English)

    2005-01-01

    Data envelopment analysis(DEA) model is widely used to evaluate the relative efficiency of producers. It is a kind of objective decision method with multiple indexes. However, the two basic models frequently used at present, the C2R model and the C2GS2 model have limitations when used alone,resulting in evaluations that are often unsatisfactory. In order to solve this problem, a mixed DEA model is built and is used to evaluate the validity of the business efficiency of listed companies. An explanation of how to use this mixed DEA model is offered and its feasibility is verified.

  20. Multiple and mixed Helicobacter pylori infections: Comparison of two epidemiological situations in Tunisia and France.

    Science.gov (United States)

    Ben Mansour, Khansa; Fendri, Chedlia; Battikh, Hajer; Garnier, Martine; Zribi, Meriem; Jlizi, Asma; Burucoa, Christophe

    2016-01-01

    Individuals can be infected by either a single or multiple strains of Helicobacter pylori. Multiple infection with genetically different isolates and particularly mixed infection with both antibiotic-susceptible and resistant isolates are difficult to detect and should impact the effectiveness of eradication treatment. It is largely assumed that multiple infections are more frequent in developing countries but an actual comparison developing/developed using a single methodology has never been reported. To compare the prevalence of multiple and mixed H. pylori infection in Tunisia and France, we conducted a prospective study including 42 H. pylori-culture positive infected patients (21 Tunisian and 21 French) never previously treated for H. pylori infection. One gastric biopsy was collected from antrum. Three to eleven (mean = 9) colonies were isolated from each biopsy. A total of 375 different isolates were genotyped using RAPD fingerprinting and antimicrobial susceptibility testing was performed on amoxicillin, clarithromycin, ciprofloxacin, rifampicin, tetracycline and metronidazole with E-tests. Multiple infection was defined by different RAPD fingerprintings among the different isolates from a single patient. Mixed infection was defined by different resistance profiles among the different isolates from a single patient. Multiple H. pylori infection is more prevalent in Tunisia than in France. It occurred in ten (48%) Tunisian patients and in one (5%) French patient (p < 0.001). Mixed infection is common (24%), it occurred in 4 (19%) Tunisian patients and in 6 (29%) French patients (p = 0.46) and was mainly (8/10) due to genetically related clones in single infection.

  1. A modified EM algorithm for estimation in generalized mixed models.

    Science.gov (United States)

    Steele, B M

    1996-12-01

    Application of the EM algorithm for estimation in the generalized mixed model has been largely unsuccessful because the E-step cannot be determined in most instances. The E-step computes the conditional expectation of the complete data log-likelihood and when the random effect distribution is normal, this expectation remains an intractable integral. The problem can be approached by numerical or analytic approximations; however, the computational burden imposed by numerical integration methods and the absence of an accurate analytic approximation have limited the use of the EM algorithm. In this paper, Laplace's method is adapted for analytic approximation within the E-step. The proposed algorithm is computationally straightforward and retains much of the conceptual simplicity of the conventional EM algorithm, although the usual convergence properties are not guaranteed. The proposed algorithm accommodates multiple random factors and random effect distributions besides the normal, e.g., the log-gamma distribution. Parameter estimates obtained for several data sets and through simulation show that this modified EM algorithm compares favorably with other generalized mixed model methods.

  2. Inference of ICF implosion core mix using experimental data and theoretical mix modeling

    Energy Technology Data Exchange (ETDEWEB)

    Sherrill, Leslie Welser [Los Alamos National Laboratory; Haynes, Donald A [Los Alamos National Laboratory; Cooley, James H [Los Alamos National Laboratory; Sherrill, Manolo E [Los Alamos National Laboratory; Mancini, Roberto C [UNR; Tommasini, Riccardo [LLNL; Golovkin, Igor E [PRISM COMP. SCIENCES; Haan, Steven W [LLNL

    2009-01-01

    The mixing between fuel and shell materials in Inertial Confinement Fusion (lCF) implosion cores is a current topic of interest. The goal of this work was to design direct-drive ICF experiments which have varying levels of mix, and subsequently to extract information on mixing directly from the experimental data using spectroscopic techniques. The experimental design was accomplished using hydrodynamic simulations in conjunction with Haan's saturation model, which was used to predict the mix levels of candidate experimental configurations. These theoretical predictions were then compared to the mixing information which was extracted from the experimental data, and it was found that Haan's mix model predicted trends in the width of the mix layer as a function of initial shell thickness. These results contribute to an assessment of the range of validity and predictive capability of the Haan saturation model, as well as increasing confidence in the methods used to extract mixing information from experimental data.

  3. A Note on the Identifiability of Generalized Linear Mixed Models

    DEFF Research Database (Denmark)

    Labouriau, Rodrigo

    2014-01-01

    I present here a simple proof that, under general regularity conditions, the standard parametrization of generalized linear mixed model is identifiable. The proof is based on the assumptions of generalized linear mixed models on the first and second order moments and some general mild regularity ...... conditions, and, therefore, is extensible to quasi-likelihood based generalized linear models. In particular, binomial and Poisson mixed models with dispersion parameter are identifiable when equipped with the standard parametrization......I present here a simple proof that, under general regularity conditions, the standard parametrization of generalized linear mixed model is identifiable. The proof is based on the assumptions of generalized linear mixed models on the first and second order moments and some general mild regularity...

  4. Normal form analysis of multiple bifurcations in incompletely mixed chemical reactors

    Science.gov (United States)

    Puhl, Andreas; Nicolis, Grégoire

    1987-07-01

    Using the theory of normal forms, we investigate the effects of mixing in a continuous flow stirred tank reactor (CSTR) for a reaction model exhibiting oscillatory behavior in the vicinity of a degenerated bifurcation point (here, a Takens-Bogdanov point). In addition we show without specification of a particular reaction system that, as long as reaction rates remain much slower than the inverse mixing time, incomplete mixing introduces a new bifurcation parameter for nonpremixed feeding conditions, whereas premixed feeding conditions merely lead to a renormalization of flow rate.

  5. Modeling Dynamic Effects of the Marketing Mix on Market Shares

    NARCIS (Netherlands)

    D. Fok (Dennis); R. Paap (Richard); Ph.H.B.F. Franses (Philip Hans)

    2003-01-01

    textabstractTo comprehend the competitive structure of a market, it is important to understand the short-run and long-run effects of the marketing mix on market shares. A useful model to link market shares with marketing-mix variables, like price and promotion, is the market share attraction model.

  6. Modeling Dynamic Effects of the Marketing Mix on Market Shares

    NARCIS (Netherlands)

    D. Fok (Dennis); R. Paap (Richard); Ph.H.B.F. Franses (Philip Hans)

    2003-01-01

    textabstractTo comprehend the competitive structure of a market, it is important to understand the short-run and long-run effects of the marketing mix on market shares. A useful model to link market shares with marketing-mix variables, like price and promotion, is the market share attraction model.

  7. Pricing Model of Multiattribute Derivatives Based on Mixed Process

    Institute of Scientific and Technical Information of China (English)

    2000-01-01

    By Analyzing the behavior and character of derivative security, the authorsestablished a pricing model of multiattribute derivative security whose underlying asset pricingprocess is a mixed process, and obtained a new model for option pricing of multiattribute derivatives based on mixed process, and improved some original results.

  8. Modeling the oxygen uptake kinetics during exercise testing of patients with chronic obstructive pulmonary diseases using nonlinear mixed models

    DEFF Research Database (Denmark)

    Baty, Florent; Ritz, Christian; van Gestel, Arnoldus

    2016-01-01

    regression. Simultaneous modeling of multiple kinetics requires nonlinear mixed models methodology. To the best of our knowledge, no such curve-fitting approach has been used to analyze multiple [Formula: see text]O2 kinetics in both research and clinical practice so far. METHODS: In the present study, we...... describe functionality of the R package medrc that extends the framework of the commonly used packages drc and nlme and allows fitting nonlinear mixed effects models for automated nonlinear regression modeling. The methodology was applied to a data set including 6MWT [Formula: see text]O2 kinetics from 61...... patients with chronic obstructive pulmonary disease (disease severity stage II to IV). The mixed effects approach was compared to a traditional curve-by-curve approach. RESULTS: A six-parameter nonlinear regression model was jointly fitted to the set of [Formula: see text]O2 kinetics. Significant...

  9. Modeling the oxygen uptake kinetics during exercise testing of patients with chronic obstructive pulmonary diseases using nonlinear mixed models

    DEFF Research Database (Denmark)

    Baty, Florent; Ritz, Christian; van Gestel, Arnoldus;

    2016-01-01

    regression. Simultaneous modeling of multiple kinetics requires nonlinear mixed models methodology. To the best of our knowledge, no such curve-fitting approach has been used to analyze multiple [Formula: see text]O2 kinetics in both research and clinical practice so far. METHODS: In the present study, we...... describe functionality of the R package medrc that extends the framework of the commonly used packages drc and nlme and allows fitting nonlinear mixed effects models for automated nonlinear regression modeling. The methodology was applied to a data set including 6MWT [Formula: see text]O2 kinetics from 61...... patients with chronic obstructive pulmonary disease (disease severity stage II to IV). The mixed effects approach was compared to a traditional curve-by-curve approach. RESULTS: A six-parameter nonlinear regression model was jointly fitted to the set of [Formula: see text]O2 kinetics. Significant...

  10. Models of neutrino mass, mixing and CP violation

    Science.gov (United States)

    King, Stephen F.

    2015-12-01

    In this topical review we argue that neutrino mass and mixing data motivates extending the Standard Model (SM) to include a non-Abelian discrete flavour symmetry in order to accurately predict the large leptonic mixing angles and {C}{P} violation. We begin with an overview of the SM puzzles, followed by a description of some classic lepton mixing patterns. Lepton mixing may be regarded as a deviation from tri-bimaximal mixing, with charged lepton corrections leading to solar mixing sum rules, or tri-maximal lepton mixing leading to atmospheric mixing rules. We survey neutrino mass models, using a roadmap based on the open questions in neutrino physics. We then focus on the seesaw mechanism with right-handed neutrinos, where sequential dominance (SD) can account for large lepton mixing angles and {C}{P} violation, with precise predictions emerging from constrained SD (CSD). We define the flavour problem and discuss progress towards a theory of favour using GUTs and discrete family symmetry. We classify models as direct, semidirect or indirect, according to the relation between the Klein symmetry of the mass matrices and the discrete family symmetry, in all cases focussing on spontaneous {C}{P} violation. Finally we give two examples of realistic and highly predictive indirect models with CSD, namely an A to Z of flavour with Pati-Salam and a fairly complete A 4 × SU(5) SUSY GUT of flavour, where both models have interesting implications for leptogenesis.

  11. Multiplicity Control in Structural Equation Modeling

    Science.gov (United States)

    Cribbie, Robert A.

    2007-01-01

    Researchers conducting structural equation modeling analyses rarely, if ever, control for the inflated probability of Type I errors when evaluating the statistical significance of multiple parameters in a model. In this study, the Type I error control, power and true model rates of famsilywise and false discovery rate controlling procedures were…

  12. Molecular Thermodynamic Modeling of Mixed Solvent Solubility

    DEFF Research Database (Denmark)

    Ellegaard, Martin Dela; Abildskov, Jens; O’Connell, John P.

    2010-01-01

    A method based on statistical mechanical fluctuation solution theory for composition derivatives of activity coefficients is employed for estimating dilute solubilities of 11 solid pharmaceutical solutes in nearly 70 mixed aqueous and nonaqueous solvent systems. The solvent mixtures range from...... nearly ideal to strongly nonideal. The database covers a temperature range from 293 to 323 K. Comparisons with available data and other existing solubility methods show that the method successfully describes a variety of observed mixed solvent solubility behaviors using solute−solvent parameters from...

  13. TESTS FOR VARIANCE COMPONENTS IN VARYING COEFFICIENT MIXED MODELS

    National Research Council Canada - National Science Library

    Zaixing Li; Yuedong Wang; Ping Wu; Wangli Xu; Lixing Zhu

    2012-01-01

    .... To address the question of whether a varying coefficient mixed model can be reduced to a simpler varying coefficient model, we develop one-sided tests for the null hypothesis that all the variance components are zero...

  14. A multifluid mix model with material strength effects

    Energy Technology Data Exchange (ETDEWEB)

    Chang, C. H. [Los Alamos National Laboratory; Scannapieco, A. J. [Los Alamos National Laboratory

    2012-04-23

    We present a new multifluid mix model. Its features include material strength effects and pressure and temperature nonequilibrium between mixing materials. It is applicable to both interpenetration and demixing of immiscible fluids and diffusion of miscible fluids. The presented model exhibits the appropriate smooth transition in mathematical form as the mixture evolves from multiphase to molecular mixing, extending its applicability to the intermediate stages in which both types of mixing are present. Virtual mass force and momentum exchange have been generalized for heterogeneous multimaterial mixtures. The compression work has been extended so that the resulting species energy equations are consistent with the pressure force and material strength.

  15. Software engineering the mixed model for genome-wide association studies on large samples.

    Science.gov (United States)

    Zhang, Zhiwu; Buckler, Edward S; Casstevens, Terry M; Bradbury, Peter J

    2009-11-01

    Mixed models improve the ability to detect phenotype-genotype associations in the presence of population stratification and multiple levels of relatedness in genome-wide association studies (GWAS), but for large data sets the resource consumption becomes impractical. At the same time, the sample size and number of markers used for GWAS is increasing dramatically, resulting in greater statistical power to detect those associations. The use of mixed models with increasingly large data sets depends on the availability of software for analyzing those models. While multiple software packages implement the mixed model method, no single package provides the best combination of fast computation, ability to handle large samples, flexible modeling and ease of use. Key elements of association analysis with mixed models are reviewed, including modeling phenotype-genotype associations using mixed models, population stratification, kinship and its estimation, variance component estimation, use of best linear unbiased predictors or residuals in place of raw phenotype, improving efficiency and software-user interaction. The available software packages are evaluated, and suggestions made for future software development.

  16. Modeling a Rain-Induced Mixed Layer

    Science.gov (United States)

    1990-06-01

    te -)-A-- e e -2)- . (7) ’&Z AZ Az D Using the exponential relations with trigonometry , equation (7) becomes, Ok n) 3 (I- cos2ikAz)+ D (1- cos ikAz...completely unknown because there are no prior studies which predict what portion of total energy may go into subsurface mixing. The biggest obstacle

  17. Models of Neutrino Mass, Mixing and CP Violation

    CERN Document Server

    King, Stephen F

    2015-01-01

    In this topical review we argue that neutrino mass and mixing data motivates extending the Standard Model to include a non-Abelian discrete flavour symmetry in order to accurately predict the large leptonic mixing angles and CP violation. We begin with an overview of the Standard Model puzzles, followed by a description of some classic lepton mixing patterns. Lepton mixing may be regarded as a deviation from tri-bimaximal mixing, with charged lepton corrections leading to solar mixing sum rules, or tri-maximal lepton mixing leading to atmospheric mixing rules. We survey neutrino mass models, using a roadmap based on the open questions in neutrino physics. We then focus on the seesaw mechanism with right-handed neutrinos, where sequential dominance (SD) can account for large lepton mixing angles and CP violation, with precise predictions emerging from constrained SD (CSD). We define the flavour problem and discuss progress towards a theory of flavour using GUTs and discrete family symmetry. We classify models ...

  18. Modeling and characterization of multiple coupled lines

    Science.gov (United States)

    Tripathi, Alok

    1999-10-01

    A configuration-oriented circuit model for multiple coupled lines in an inhomogeneous medium is developed and presented in this thesis. This circuit model consists of a network of uncoupled transmission lines and is readily modeled with simulation tools like LIBRA© and SPICE ©. It provides an equivalent circuit representation which is simple and topologically meaningful as compared to the model based on modal decomposition. The configuration-oriented model is derived by decomposing the immittance matrices associated with an n coupled line 2n-port system. Time- and frequency- domain simulations of typical coupled line multiports are included to exemplify the utility of the model. The model is useful for the simulation and design of general single and multilayer coupled line components, such as filters and couplers, and for the investigation of signal integrity issues including crosstalk in interconnects associated with high speed digital and mixed signal electronic modules and packages. It is shown that multiconductor lossless structures in an inhomogeneous medium can be characterized by multiport time-domain reflection (MR) measurements. A synthesis technique of an equivalent lossless (non-dispersive) uniform multiconductor n coupled lines (UMCL) 2n-port system from the measured discrete time-domain reflection response is presented. This procedure is based on the decomposition of the characteristic immittance matrices of the UMCL in terms of partial mode immittance matrices. The decomposition scheme leads to the discrete transition matrix function of a UMCL 2n-port system. This in turn establishes a relationship between the normal-mode parameters of the UMCL and the measured impulse reflection and transmission response. Equivalence between the synthesis procedure presented in this thesis and the solution of a special form of an algebraic Riccati matrix equation whose solution can lead to the normal-mode parameters and a real termination network is illustrated. In

  19. Validation of a Theoretical Model of Diagnostic Classroom Assessment: A Mixed Methods Study

    Science.gov (United States)

    Koh, Nancy

    2012-01-01

    The purpose of the study was to validate a theoretical model of diagnostic, formative classroom assessment called, "Proximal Assessment for Learner Diagnosis" (PALD). To achieve its purpose, the study employed a two-stage, mixed-methods design. The study utilized multiple data sources from 11 elementary level mathematics teachers who…

  20. Software engineering the mixed model for genome-wide association studies on large samples

    Science.gov (United States)

    Mixed models improve the ability to detect phenotype-genotype associations in the presence of population stratification and multiple levels of relatedness in genome-wide association studies (GWAS), but for large data sets the resource consumption becomes impractical. At the same time, the sample siz...

  1. A mixed integer program to model spatial wildfire behavior and suppression placement decisions

    Science.gov (United States)

    Erin J. Belval; Yu Wei; Michael. Bevers

    2015-01-01

    Wildfire suppression combines multiple objectives and dynamic fire behavior to form a complex problem for decision makers. This paper presents a mixed integer program designed to explore integrating spatial fire behavior and suppression placement decisions into a mathematical programming framework. Fire behavior and suppression placement decisions are modeled using...

  2. An Investigation of Item Fit Statistics for Mixed IRT Models

    Science.gov (United States)

    Chon, Kyong Hee

    2009-01-01

    The purpose of this study was to investigate procedures for assessing model fit of IRT models for mixed format data. In this study, various IRT model combinations were fitted to data containing both dichotomous and polytomous item responses, and the suitability of the chosen model mixtures was evaluated based on a number of model fit procedures.…

  3. Modeling of Mixed Decision Making Process

    OpenAIRE

    yahia, Nesrine Ben; Bellamine, Narjès; Ghezala, Henda Ben

    2012-01-01

    Decision making whenever and wherever it is happened is key to organizations success. In order to make correct decision, individuals, teams and organizations need both knowledge management (to manage content) and collaboration (to manage group processes) to make that more effective and efficient. In this paper, we explain the knowledge management and collaboration convergence. Then, we propose a formal description of mixed and multimodal decision making (MDM) process where decision may be mad...

  4. Modeling of Mixed Decision Making Process

    OpenAIRE

    Yahia, Nesrine Ben; Bellamine, Narjès; Ghezala, Henda Ben

    2012-01-01

    Decision making whenever and wherever it is happened is key to organizations success. In order to make correct decision, individuals, teams and organizations need both knowledge management (to manage content) and collaboration (to manage group processes) to make that more effective and efficient. In this paper, we explain the knowledge management and collaboration convergence. Then, we propose a formal description of mixed and multimodal decision making (MDM) process where decision may be mad...

  5. Lagrangian Mixing in an Axisymmetric Hurricane Model

    Science.gov (United States)

    2010-07-23

    important role for intensification. The proposed mechanisms are either direct and mechanical or indirect and thermodynamic. Direct and mechanical...2001), and Green et al. (2006), and applied in a study of Koh and Legras (2002) to the strato - spheric polar vortex. Relative dispersion was studied...winds delayed 4 minutes for the BL inflow, with linear best fit and norm of residuals. nent role for mixing in the region, which is related to hurri

  6. On the coalescence-dispersion modeling of turbulent molecular mixing

    Science.gov (United States)

    Givi, Peyman; Kosaly, George

    1987-01-01

    The general coalescence-dispersion (C/D) closure provides phenomenological modeling of turbulent molecular mixing. The models of Curl and Dopazo and O'Brien appear as two limiting C/D models that bracket the range of results one can obtain by various models. This finding is used to investigate the sensitivtiy of the results to the choice of the model. Inert scalar mixing is found to be less model-sensitive than mixing accompanied by chemical reaction. Infinitely fast chemistry approximation is used to relate the C/D approach to Toor's earlier results. Pure mixing and infinite rate chemistry calculations are compared to study further a recent result of Hsieh and O'Brien who found that higher concentration moments are not sensitive to chemistry.

  7. Nonlinear diffusion model for Rayleigh-Taylor mixing.

    Science.gov (United States)

    Boffetta, G; De Lillo, F; Musacchio, S

    2010-01-22

    The complex evolution of turbulent mixing in Rayleigh-Taylor convection is studied in terms of eddy diffusivity models for the mean temperature profile. It is found that a nonlinear model, derived within the general framework of Prandtl mixing theory, reproduces accurately the evolution of turbulent profiles obtained from numerical simulations. Our model allows us to give very precise predictions for the turbulent heat flux and for the Nusselt number in the ultimate state regime of thermal convection.

  8. Nonlinear diffusion model for Rayleigh-Taylor mixing

    CERN Document Server

    Boffetta, G; Musacchio, S

    2010-01-01

    The complex evolution of turbulent mixing in Rayleigh-Taylor convection is studied in terms of eddy diffusiviy models for the mean temperature profile. It is found that a non-linear model, derived within the general framework of Prandtl mixing theory, reproduces accurately the evolution of turbulent profiles obtained from numerical simulations. Our model allows to give very precise predictions for the turbulent heat flux and for the Nusselt number in the ultimate state regime of thermal convection.

  9. Multiple Model Approaches to Modelling and Control,

    DEFF Research Database (Denmark)

    on the ease with which prior knowledge can be incorporated. It is interesting to note that researchers in Control Theory, Neural Networks,Statistics, Artificial Intelligence and Fuzzy Logic have more or less independently developed very similar modelling methods, calling them Local ModelNetworks, Operating...... of introduction of existing knowledge, as well as the ease of model interpretation. This book attempts to outlinemuch of the common ground between the various approaches, encouraging the transfer of ideas.Recent progress in algorithms and analysis is presented, with constructive algorithms for automated model...

  10. Discrete Flavor Symmetries and Models of Neutrino Mixing

    CERN Document Server

    Altarelli, Guido

    2010-01-01

    We review the application of non abelian discrete groups to the theory of neutrino masses and mixing, which is strongly suggested by the agreement of the Tri-Bimaximal mixing pattern with experiment. After summarizing the motivation and the formalism, we discuss specific models, based on A4, S4 and other finite groups, and their phenomenological implications, including lepton flavor violating processes, leptogenesis and the extension to quarks. In alternative to Tri-Bimaximal mixing the application of discrete flavor symmetries to quark-lepton complementarity and Bimaximal Mixing is also considered.

  11. Kinetic mixing effect in the 3 -3 -1 -1 model

    Science.gov (United States)

    Dong, P. V.; Si, D. T.

    2016-06-01

    We show that the mixing effect of the neutral gauge bosons in the 3 -3 -1 -1 model comes from two sources. The first one is due to the 3 -3 -1 -1 gauge symmetry breaking as usual, whereas the second one results from the kinetic mixing between the gauge bosons of U (1 )X and U (1 )N groups, which are used to determine the electric charge and baryon minus lepton numbers, respectively. Such mixings modify the ρ -parameter and the known couplings of Z with fermions. The constraints that arise from flavor-changing neutral currents due to the gauge boson mixings and nonuniversal fermion generations are also given.

  12. Mapping vulnerability of multiple aquifers using multiple models and fuzzy logic to objectively derive model structures.

    Science.gov (United States)

    Nadiri, Ata Allah; Sedghi, Zahra; Khatibi, Rahman; Gharekhani, Maryam

    2017-09-01

    Driven by contamination risks, mapping Vulnerability Indices (VI) of multiple aquifers (both unconfined and confined) is investigated by integrating the basic DRASTIC framework with multiple models overarched by Artificial Neural Networks (ANN). The DRASTIC framework is a proactive tool to assess VI values using the data from the hydrosphere, lithosphere and anthroposphere. However, a research case arises for the application of multiple models on the ground of poor determination coefficients between the VI values and non-point anthropogenic contaminants. The paper formulates SCFL models, which are derived from the multiple model philosophy of Supervised Committee (SC) machines and Fuzzy Logic (FL) and hence SCFL as their integration. The Fuzzy Logic-based (FL) models include: Sugeno Fuzzy Logic (SFL), Mamdani Fuzzy Logic (MFL), Larsen Fuzzy Logic (LFL) models. The basic DRASTIC framework uses prescribed rating and weighting values based on expert judgment but the four FL-based models (SFL, MFL, LFL and SCFL) derive their values as per internal strategy within these models. The paper reports that FL and multiple models improve considerably on the correlation between the modeled vulnerability indices and observed nitrate-N values and as such it provides evidence that the SCFL multiple models can be an alternative to the basic framework even for multiple aquifers. The study area with multiple aquifers is in Varzeqan plain, East Azerbaijan, northwest Iran. Copyright © 2017 Elsevier B.V. All rights reserved.

  13. Perturbative estimates of lepton mixing angles in unified models

    Energy Technology Data Exchange (ETDEWEB)

    Antusch, Stefan [Max-Planck-Institut fuer Physik (Werner-Heisenberg-Institut), Foehringer Ring 6, 80805 Muenchen (Germany)], E-mail: antusch@mppmu.mpg.de; King, Stephen F. [School of Physics and Astronomy, University of Southampton, Southampton, SO17 1BJ (United Kingdom); Malinsky, Michal [Department of Theoretical Physics, School of Engineering Sciences, Royal Institute of Technology (KTH) - AlbaNova University Center, Roslagstullsbacken 21, SE-106 91 Stockholm (Sweden)

    2009-10-11

    Many unified models predict two large neutrino mixing angles, with the charged lepton mixing angles being small and quark-like, and the neutrino masses being hierarchical. Assuming this, we present simple approximate analytic formulae giving the lepton mixing angles in terms of the underlying high energy neutrino mixing angles together with small perturbations due to both charged lepton corrections and renormalisation group (RG) effects, including also the effects of third family canonical normalization (CN). We apply the perturbative formulae to the ubiquitous case of tri-bimaximal neutrino mixing at the unification scale, in order to predict the theoretical corrections to mixing angle predictions and sum rule relations, and give a general discussion of all limiting cases. We also discuss the implications for the sum rule relations of the measurement of a non-zero reactor angle, as hinted at by recent experimental measurements.

  14. CREDO-MIX - DIGITAL MODEL PROJECT

    OpenAIRE

    Белятинський, А. О.; Національний авіаційний університет; Чичикало, Л. Г.; Національний авіаційний університет; Резнік, О. М.; Національний авіаційний університет

    2013-01-01

    System CREDO-MIX which is intended for the decision of problems of designing of general plans of the enterprises, transport constructions, inhabited and civil objects is considered. Рассмотрена система CREDO_MIX, которая предназначена для решения задач проектирования генеральных планов предприятий, транспортных сооружений и жилищно-гражданских объектов. Розглянуто систему CREDO_MIX, яка призначена для вирішення завдань проектування генеральних планів підприємств, транспортних споруд і ж...

  15. Mixed finite elements for global tide models

    CERN Document Server

    Cotter, Colin J

    2014-01-01

    We study mixed finite element methods for the linearized rotating shallow water equations with linear drag and forcing terms. By means of a strong energy estimate for an equivalent second-order formulation for the linearized momentum, we prove long-time stability of the system without energy accumulation -- the geotryptic state. A priori error estimates for the linearized momentum and free surface elevation are given in $L^2$ as well as for the time derivative and divergence of the linearized momentum. Numerical results confirm the theoretical results regarding both energy damping and convergence rates.

  16. Shell model of optimal passive-scalar mixing

    Science.gov (United States)

    Miles, Christopher; Doering, Charles

    2015-11-01

    Optimal mixing is significant to process engineering within industries such as food, chemical, pharmaceutical, and petrochemical. An important question in this field is ``How should one stir to create a homogeneous mixture while being energetically efficient?'' To answer this question, we consider an initially unmixed scalar field representing some concentration within a fluid on a periodic domain. This passive-scalar field is advected by the velocity field, our control variable, constrained by a physical quantity such as energy or enstrophy. We consider two objectives: local-in-time (LIT) optimization (what will maximize the mixing rate now?) and global-in-time (GIT) optimization (what will maximize mixing at the end time?). Throughout this work we use the H-1 mix-norm to measure mixing. To gain a better understanding, we provide a simplified mixing model by using a shell model of passive-scalar advection. LIT optimization in this shell model gives perfect mixing in finite time for the energy-constrained case and exponential decay to the perfect-mixed state for the enstrophy-constrained case. Although we only enforce that the time-average energy (or enstrophy) equals a chosen value in GIT optimization, interestingly, the optimal control keeps this value constant over time.

  17. Profile construction in experimental choice designs for mixed logit models

    NARCIS (Netherlands)

    Sandor, Z; Wedel, M

    2002-01-01

    A computationally attractive model for the analysis of conjoint choice experiments is the mixed multinomial logit model, a multinomial logit model in which it is assumed that the coefficients follow a (normal) distribution across subjects. This model offers the advantage over the standard

  18. Joint modeling of longitudinal data in multiple behavioral change.

    Science.gov (United States)

    Charnigo, Richard; Kryscio, Richard; Bardo, Michael T; Lynam, Donald; Zimmerman, Rick S

    2011-06-01

    Multiple behavioral change is an exciting and evolving research area, albeit one that presents analytic challenges to investigators. This manuscript considers the problem of modeling jointly trajectories for two or more possibly non-normally distributed dependent variables, such as marijuana smoking and risky sexual activity, collected longitudinally. Of particular scientific interest is applying such modeling to elucidate the nature of the interaction, if any, between an intervention and personal characteristics, such as sensation seeking and impulsivity. The authors describe three analytic approaches: generalized linear mixed modeling, group-based trajectory modeling, and latent growth curve modeling. In particular, the authors identify identify the strengths and weaknesses of these analytic approaches and assess their impact (or lack thereof) on the psychological and behavioral science literature. The authors also compare what investigators have been doing analytically versus what they might want to be doing in the future and discuss the implications for basic and translational research.

  19. Comparison of multiplicative heterogeneous variance adjustment models for genetic evaluations.

    Science.gov (United States)

    Márkus, Sz; Mäntysaari, E A; Strandén, I; Eriksson, J-Å; Lidauer, M H

    2014-06-01

    Two heterogeneous variance adjustment methods and two variance models were compared in a simulation study. The method used for heterogeneous variance adjustment in the Nordic test-day model, which is a multiplicative method based on Meuwissen (J. Dairy Sci., 79, 1996, 310), was compared with a restricted multiplicative method where the fixed effects were not scaled. Both methods were tested with two different variance models, one with a herd-year and the other with a herd-year-month random effect. The simulation study was built on two field data sets from Swedish Red dairy cattle herds. For both data sets, 200 herds with test-day observations over a 12-year period were sampled. For one data set, herds were sampled randomly, while for the other, each herd was required to have at least 10 first-calving cows per year. The simulations supported the applicability of both methods and models, but the multiplicative mixed model was more sensitive in the case of small strata sizes. Estimation of variance components for the variance models resulted in different parameter estimates, depending on the applied heterogeneous variance adjustment method and variance model combination. Our analyses showed that the assumption of a first-order autoregressive correlation structure between random-effect levels is reasonable when within-herd heterogeneity is modelled by year classes, but less appropriate for within-herd heterogeneity by month classes. Of the studied alternatives, the multiplicative method and a variance model with a random herd-year effect were found most suitable for the Nordic test-day model for dairy cattle evaluation.

  20. A Nonparametric Approach for Assessing Goodness-of-Fit of IRT Models in a Mixed Format Test

    Science.gov (United States)

    Liang, Tie; Wells, Craig S.

    2015-01-01

    Investigating the fit of a parametric model plays a vital role in validating an item response theory (IRT) model. An area that has received little attention is the assessment of multiple IRT models used in a mixed-format test. The present study extends the nonparametric approach, proposed by Douglas and Cohen (2001), to assess model fit of three…

  1. Security enhanced multiple-image authentication based on cascaded optical interference and sparse phase mixed encoding

    Science.gov (United States)

    Wang, Qu; Alfalou, A.; Brosseau, C.

    2016-08-01

    An interference-based cascaded filtering method is proposed to perform multiple-image authentication. By using spatial phase mixed encoding technique and phase retrieval iteration in Fresnel transform domain, multiple original images are encoded in two phase-only cipher texts. Using correct keys in an interference-based configuration, one can only recover a noisy image without any secret information revealed. A cascaded phase-only filtering structure, instead of correlation methods, is applied to perform authentication where the decrypted image is converted into a pre-specified irregular pattern that functions as authentication criterion. The proposed structure can strengthen security greatly because authentication output strongly depends on the decrypted images and authentication keys. Moreover, the decryption and authentication procedures can be completed optically in a more compact way than previous methods. Simulation results have been given to prove the effectiveness of this proposal and evaluate its performance.

  2. Multiplicative earthquake likelihood models incorporating strain rates

    Science.gov (United States)

    Rhoades, D. A.; Christophersen, A.; Gerstenberger, M. C.

    2017-01-01

    SUMMARYWe examine the potential for strain-rate variables to improve long-term earthquake likelihood models. We derive a set of multiplicative hybrid earthquake likelihood models in which cell rates in a spatially uniform baseline model are scaled using combinations of covariates derived from earthquake catalogue data, fault data, and strain-rates for the New Zealand region. Three components of the strain rate estimated from GPS data over the period 1991-2011 are considered: the shear, rotational and dilatational strain rates. The hybrid model parameters are optimised for earthquakes of M 5 and greater over the period 1987-2006 and tested on earthquakes from the period 2012-2015, which is independent of the strain rate estimates. The shear strain rate is overall the most informative individual covariate, as indicated by Molchan error diagrams as well as multiplicative modelling. Most models including strain rates are significantly more informative than the best models excluding strain rates in both the fitting and testing period. A hybrid that combines the shear and dilatational strain rates with a smoothed seismicity covariate is the most informative model in the fitting period, and a simpler model without the dilatational strain rate is the most informative in the testing period. These results have implications for probabilistic seismic hazard analysis and can be used to improve the background model component of medium-term and short-term earthquake forecasting models.

  3. Discrete choice models with multiplicative error terms

    DEFF Research Database (Denmark)

    Fosgerau, Mogens; Bierlaire, Michel

    2009-01-01

    differences. We develop some properties of this type of model and show that in several cases the change from an additive to a multiplicative formulation, maintaining a specification of V, may lead to a large improvement in fit, sometimes larger than that gained from introducing random coefficients in V....

  4. Constitutive mixed mode model for cracks in concrete

    DEFF Research Database (Denmark)

    Jacobsen, J.S.; Poulsen, P.N.; Olesen, J.F.;

    2013-01-01

    The scope of the paper is to set up a constitutive mixed mode model for cracks in concrete. The model is formulated at macro level and includes the most important micro scale effects. An associated plasticity model inspired by the modified Cam clay model is established. The hardening parameters...... is determined from the topographic information and the constitutive model is thereby purely mechanically based. Using the actual topographic description the model is validated against experimental results for mixed mode crack openings....... are based on the standard Mode I tensile softening response and the response for Mode I crushing. The roughness of the crack is included through a topographic description of the crack surface. The constitutive behavior is based on the integration of local contributions. The local mixed mode ratio...

  5. Digital Waveguides versus Finite Difference Structures: Equivalence and Mixed Modeling

    Directory of Open Access Journals (Sweden)

    Karjalainen Matti

    2004-01-01

    Full Text Available Digital waveguides and finite difference time domain schemes have been used in physical modeling of spatially distributed systems. Both of them are known to provide exact modeling of ideal one-dimensional (1D band-limited wave propagation, and both of them can be composed to approximate two-dimensional (2D and three-dimensional (3D mesh structures. Their equal capabilities in physical modeling have been shown for special cases and have been assumed to cover generalized cases as well. The ability to form mixed models by joining substructures of both classes through converter elements has been proposed recently. In this paper, we formulate a general digital signal processing (DSP-oriented framework where the functional equivalence of these two approaches is systematically elaborated and the conditions of building mixed models are studied. An example of mixed modeling of a 2D waveguide is presented.

  6. A Multiple Model Approach to Modeling Based on LPF Algorithm

    Institute of Scientific and Technical Information of China (English)

    2001-01-01

    Input-output data fitting methods are often used for unknown-structure nonlinear system modeling. Based on model-on-demand tactics, a multiple model approach to modeling for nonlinear systems is presented. The basic idea is to find out, from vast historical system input-output data sets, some data sets matching with the current working point, then to develop a local model using Local Polynomial Fitting (LPF) algorithm. With the change of working points, multiple local models are built, which realize the exact modeling for the global system. By comparing to other methods, the simulation results show good performance for its simple, effective and reliable estimation.``

  7. Mixing Model Performance in Non-Premixed Turbulent Combustion

    Science.gov (United States)

    Pope, Stephen B.; Ren, Zhuyin

    2002-11-01

    In order to shed light on their qualitative and quantitative performance, three different turbulent mixing models are studied in application to non-premixed turbulent combustion. In previous works, PDF model calculations with detailed kinetics have been shown to agree well with experimental data for non-premixed piloted jet flames. The calculations from two different groups using different descriptions of the chemistry and turbulent mixing are capable of producing the correct levels of local extinction and reignition. The success of these calculations raises several questions, since it is not clear that the mixing models used contain an adequate description of the processes involved. To address these questions, three mixing models (IEM, modified Curl and EMST) are applied to a partially-stirred reactor burning hydrogen in air. The parameters varied are the residence time and the mixing time scale. For small relative values of the mixing time scale (approaching the perfectly-stirred limit) the models yield the same extinction behavior. But for larger values, the behavior is distictly different, with EMST being must resistant to extinction.

  8. A Comparison of Item Fit Statistics for Mixed IRT Models

    Science.gov (United States)

    Chon, Kyong Hee; Lee, Won-Chan; Dunbar, Stephen B.

    2010-01-01

    In this study we examined procedures for assessing model-data fit of item response theory (IRT) models for mixed format data. The model fit indices used in this study include PARSCALE's G[superscript 2], Orlando and Thissen's S-X[superscript 2] and S-G[superscript 2], and Stone's chi[superscript 2*] and G[superscript 2*]. To investigate the…

  9. Modeling Recycling Asphalt Pavement Processing Technologies in Asphalt Mixing Plants

    OpenAIRE

    Simonas Tamaliūnas; Henrikas Sivilevičius

    2011-01-01

    The article presents reclaimed asphalt pavement (RAP) processing technologies and equipment models used in the asphalt mixing plant (AMP). The schematic model indicating all possible ways to process RAP in AMP is shown. The model calculating the needed temperature of mineral materials used for heating RAP is given and an example of such calculation is provided.Article in Lithuanian

  10. Modeling Recycling Asphalt Pavement Processing Technologies in Asphalt Mixing Plants

    Directory of Open Access Journals (Sweden)

    Simonas Tamaliūnas

    2011-04-01

    Full Text Available The article presents reclaimed asphalt pavement (RAP processing technologies and equipment models used in the asphalt mixing plant (AMP. The schematic model indicating all possible ways to process RAP in AMP is shown. The model calculating the needed temperature of mineral materials used for heating RAP is given and an example of such calculation is provided.Article in Lithuanian

  11. Security and reliability analysis of diversity combining techniques in SIMO mixed RF/FSO with multiple users

    KAUST Repository

    Abd El-Malek, Ahmed H.

    2016-07-26

    In this paper, we investigate the impact of different diversity combining techniques on the security and reliability analysis of a single-input-multiple-output (SIMO) mixed radio frequency (RF)/free space optical (FSO) relay network with opportunistic multiuser scheduling. In this model, the user of the best channel among multiple users communicates with a multiple antennas relay node over an RF link, and then, the relay node employs amplify-and-forward (AF) protocol in retransmitting the user data to the destination over an FSO link. Moreover, the authorized transmission is assumed to be attacked by a single passive RF eavesdropper equipped with multiple antennas. Therefore, the system security reliability trade-off analysis is investigated. Closed-form expressions for the system outage probability and the system intercept probability are derived. Then, the newly derived expressions are simplified to their asymptotic formulas at the high signal-to-noise- ratio (SNR) region. Numerical results are presented to validate the achieved exact and asymptotic results and to illustrate the impact of various system parameters on the system performance. © 2016 IEEE.

  12. Markov and mixed models with applications

    DEFF Research Database (Denmark)

    Mortensen, Stig Bousgaard

    This thesis deals with mathematical and statistical models with focus on applications in pharmacokinetic and pharmacodynamic (PK/PD) modelling. These models are today an important aspect of the drug development in the pharmaceutical industry and continued research in statistical methodology within...... as a deterministic mean value using ordinary differential equations to which a random error is added. This thesis explores methods based on stochastic differential equations (SDEs) to extend the models to more adequately describe both true random biological variations and also variations due to unknown...... the individual in almost any thinkable way. This project focuses on measuring the eects on sleep in both humans and animals. The sleep process is usually analyzed by categorizing small time segments into a number of sleep states and this can be modelled using a Markov process. For this purpose new methods...

  13. Analysis of an incomplete longitudinal composite variable using a marginalized random effects model and multiple imputation.

    Science.gov (United States)

    Gosho, Masahiko; Maruo, Kazushi; Ishii, Ryota; Hirakawa, Akihiro

    2016-11-16

    The total score, which is calculated as the sum of scores in multiple items or questions, is repeatedly measured in longitudinal clinical studies. A mixed effects model for repeated measures method is often used to analyze these data; however, if one or more individual items are not measured, the method cannot be directly applied to the total score. We develop two simple and interpretable procedures that infer fixed effects for a longitudinal continuous composite variable. These procedures consider that the items that compose the total score are multivariate longitudinal continuous data and, simultaneously, handle subject-level and item-level missing data. One procedure is based on a multivariate marginalized random effects model with a multiple of Kronecker product covariance matrices for serial time dependence and correlation among items. The other procedure is based on a multiple imputation approach with a multivariate normal model. In terms of the type-1 error rate and the bias of treatment effect in total score, the marginalized random effects model and multiple imputation procedures performed better than the standard mixed effects model for repeated measures analysis with listwise deletion and single imputations for handling item-level missing data. In particular, the mixed effects model for repeated measures with listwise deletion resulted in substantial inflation of the type-1 error rate. The marginalized random effects model and multiple imputation methods provide for a more efficient analysis by fully utilizing the partially available data, compared to the mixed effects model for repeated measures method with listwise deletion.

  14. Multiplicity within Singularity: Racial Categorization and Recognizing “Mixed Race” in Singapore

    Directory of Open Access Journals (Sweden)

    Zarine L. Rocha

    2011-01-01

    Full Text Available “Race” and racial categories play a significant role in everyday life and state organization in Singapore. While multiplicity and diversity are important characteristics of Singaporean society, Singapore’s multiracial ideology is firmly based on separate, racialized groups, leaving little room for racial projects reflecting more complex identifications. This article explores national narratives of race, culture and belonging as they have developed over time, used as a tool for the state, and re-emerging in discourses of hybridity and “double-barrelled” racial identifications. Multiracialism, as a maintained structural feature of Singaporean society, is both challenged and reinforced by new understandings of hybridity and older conceptions of what it means to be “mixed race” in a (post-colonial society. Tracing the temporal thread of racial categorization through a lens of mixedness, this article places the Singaporean case within emerging work on hybridity and recognition of “mixed race”. It illustrates how state-led understandings of race and “mixed race” describe processes of both continuity and change, with far-reaching practical and ideological impacts.

  15. Multiple models adaptive feedforward decoupling controller

    Institute of Scientific and Technical Information of China (English)

    Wang Xin; Li Shaoyuan; Wang Zhongjie

    2005-01-01

    When the parameters of the system change abruptly, a new multivariable adaptive feedforward decoupling controller using multiple models is presented to improve the transient response. The system models are composed of multiple fixed models, one free-running adaptive model and one re-initialized adaptive model. The fixed models are used to provide initial control to the process. The re-initialized adaptive model can be reinitialized as the selected model to improve the adaptation speed. The free-running adaptive controller is added to guarantee the overall system stability. At each instant, the best system model is selected according to the switching index and the corresponding controller is designed. During the controller design, the interaction is viewed as the measurable disturbance and eliminated by the choice of the weighting polynomial matrix. It not only eliminates the steady-state error but also decouples the system dynamically. The global convergence is obtained and several simulation examples are presented to illustrate the effectiveness of the proposed controller.

  16. Multiple or mixed cerebral microbleeds and dementia in patients with vascular risk factors.

    Science.gov (United States)

    Miwa, Kaori; Tanaka, Makiko; Okazaki, Shuhei; Yagita, Yoshiki; Sakaguchi, Manabu; Mochizuki, Hideki; Kitagawa, Kazuo

    2014-08-12

    To investigate whether cerebral microbleeds (CMBs) are independently associated with incident dementia in patients with vascular risk factors. Using data from a Japanese cohort of participants with vascular risk factors in an observational study from 2001, we evaluated the association between CMBs at baseline and incident dementia. Baseline brain MRI was used to determine small-vessel disease (CMBs, lacunar infarcts, and white matter hyperintensities) and brain atrophy. Cox proportional hazards analyses were performed for predictors of dementia adjusting for age, sex, APOE ε4 allele, educational level, baseline Mini-Mental State Examination score, cerebrovascular events, vascular risk factors, and MRI findings. Of the 524 subjects (mean age 68 ± 8.3 years, 57.6% male, 12.8 ± 2.6 years of schooling, 21.6% CMBs), 44 patients with incident dementia (20 Alzheimer disease, 18 vascular dementia, 3 mixed-type, and 3 other) were diagnosed during the median 7.5-year follow-up. In multivariate analysis, the presence of overall CMBs was not associated with an increased risk of incident all-cause dementia (p = 0.15). However, multiple CMBs (≥ 2) or mixed (lobar and deep) CMBs were associated with the increased risk of all-cause dementia, whereas strictly lobar CMBs showed no association with any dementia. Multiple CMBs or mixed CMBs independently showed higher risk of all-cause dementia. Our results reinforce the hypothesis that CMBs exert deleterious effects on dementia incidence, suggesting that this association may be mediated by vascular burden. © 2014 American Academy of Neurology.

  17. Realistic face modeling based on multiple deformations

    Institute of Scientific and Technical Information of China (English)

    GONG Xun; WANG Guo-yin

    2007-01-01

    On the basis of the assumption that the human face belongs to a linear class, a multiple-deformation model is proposed to recover face shape from a few points on a single 2D image. Compared to the conventional methods, this study has the following advantages. First, the proposed modified 3D sparse deforming model is a noniterative approach that can compute global translation efficiently and accurately. Subsequently, the overfitting problem can be alleviated based on the proposed multiple deformation model. Finally, by keeping the main features, the texture generated is realistic. The comparison results show that this novel method outperforms the existing methods by using ground truth data and that realistic 3D faces can be recovered efficiently from a single photograph.

  18. A Model of Quark and Lepton Mixing and Mass Hierarchy

    CERN Document Server

    Barr, S M

    2015-01-01

    It is shown that an idea proposed in 1996 that relates in a qualitatively correct way the inter-family mass hierarchies of the up quarks, down quarks, charged leptons, and neutrinos, can be combined with a predictive scheme recently proposed for relating quark mixing and neutrino mixing. In the resulting model, the entire flavor structure of the quarks and leptons is expressible in terms of two "master matrices": a diagonal matrix that gives the inter-family mass ratios, and an off-diagonal matrix that controls all flavor mixing.

  19. Model for Dynamic Multiple of CPPI Strategy

    Directory of Open Access Journals (Sweden)

    Guangyuan Xing

    2014-01-01

    Full Text Available Focusing on the parameter “Multiple” of CPPI strategy, this study proposes a dynamic setting model of multiple for gap risk management purpose. First, CPPI gap risk is measured as the probability that the value loss of active asset exceeds its allowed maximum drop determined by a given multiple setting. Moreover, according to the statistical estimation using SV-EVT approach, a dynamic choice of multiple is detailed as a function of time-varying asset volatility, expected loss, and the possibility of occurrence of extreme events in the active asset returns illustrated empirically on Shanghai composite index data. This study not only enriches the literature of dynamic proportion portfolio insurance, but also provides a practical reference for CPPI investors to choose a moderate risky exposure achieving gap risk management, which promotes CPPI’s application in emerging capital market.

  20. A Mixed Effects Randomized Item Response Model

    Science.gov (United States)

    Fox, J.-P.; Wyrick, Cheryl

    2008-01-01

    The randomized response technique ensures that individual item responses, denoted as true item responses, are randomized before observing them and so-called randomized item responses are observed. A relationship is specified between randomized item response data and true item response data. True item response data are modeled with a (non)linear…

  1. A revision of sexual mixing matrices in models of sexually transmitted infection.

    Science.gov (United States)

    Walker, Robert; Nickson, Carolyn; Lew, Jie-Bin; Smith, Megan; Canfell, Karen

    2012-11-30

    Two sexual mixing matrices previously used in models of sexually transmitted infections (STIs) are intended to calculate the probability of sexual interaction between age groups and sexual behaviour subgroups. When these matrices are used to specify multiple criteria for how people select sexual partners (such as age group and sexual behaviour class), their conditional probability structure means that they have in practice been prone to misuse. We constructed revised mixing matrices that incorporate a corrected conditional probability structure and then used one of them to examine the effect of this revision on population modelling of STIs. Using a dynamic model of human papillomavirus (HPV) transmission as an example, we examined changes to estimates of HPV prevalence and the relative reduction in age-standardised HPV incidence after the commencement of publicly funded HPV vaccination in Australia. When all other model specifications were left unchanged, the revised mixing matrix initially led to estimates of age-specific oncogenic HPV prevalence that were up to 11% higher than our previous models at certain ages. After re-calibrating the model by modifying unobservable parameters characterising HPV natural history, the revised mixing matrix yielded similar estimates to our previous models, predicting that vaccination would lead to relative HPV incidence reductions of 43% and 85% by 2010 and 2050, respectively, compared with 43% and 86% using the unrevised mixing matrix formulation. Our revised mixing matrix offers a rigorous alternative to commonly used mixing matrices, which can be used to reliably and explicitly accommodate conditional probabilities, with appropriate re-calibration of unobservable model parameters.

  2. DIFFUSION MODEL OF CREAMY- AND VEGETABLE SPREADS MIXING

    Directory of Open Access Journals (Sweden)

    A. N. Ostrikov

    2015-01-01

    Full Text Available Summary .A mathematical model of the process of mixing cream- and vegetable spread was developed. In modeling the diffusion understanding of the nature of the process were used, allowing escape from the apparatus geometry. After turning on the mixer the mixing process begins. Its duration can be determined by the behavior of the tracer particles introduced into the agitated medium in a predetermined quantity through the free liquid surface within a short period of time. If tracer particles have the same density with the surrounding bulk liquid phase, then the path of movement of the particles and the fluid are identical. The degree of homogeneity of the composition can be stirred calculated by the coefficient of variation, which is identified by the local concentrations of tracer particles in the volume of stirred medium. The task of a one-dimensional particle transport in the plane layer of the mixed liquid is solved for their calculation. The calculated ratios obtained allow us to calculate the particle concentration at any point in the volume being mixed at random times. Based on the experiment effective mixing coefficients are identified and relations for their assessment, depending on the Reynolds number of the mixer in the range studied variations of process are offered. Using the time dependence of the variation coefficient characterizing the homogenity of the system being mixed, it is possible to determine the duration of mixing to obtain the product with the desired uniformity and homogeneity of the product under the definition of a predetermined duration of the mixing process. The variation coefficient %, indicating a sufficiently good uniformity of the spread composition was found for the spread №1, being mixed with a stirrer rotating at a speed of n=150 rev / min, and the dimensionless length of the process Fo =0,0935 for obtaining estimated relations. Using the proposed calculation algorithm one can estimate the homogeneity of the

  3. Modeling of a Multiple Digital Automatic Gain Control System

    Institute of Scientific and Technical Information of China (English)

    WANG Jingdian; LU Xiuhong; ZHANG Li

    2008-01-01

    Automatic gain control (AGC) has been used in many applications. The key features of AGC, including a steady state output and static/dynamic timing response, depend mainly on key parameters such as the reference and the filter coefficients. A simple model developed to describe AGC systems based on several simple assumptions shows that AGC always converges to the reference and that the timing constant depends on the filter coefficients. Measures are given to prevent oscillations and limit cycle effects. The simple AGC system is adapted to a multiple AGC system for a TV tuner in a much more efficient model. Simulations using the C language are 16 times faster than those with MATLAB, and 10 times faster than those with a mixed register transfer level (RTL)-simulation program with integrated circuit emphasis (SPICE) model.

  4. Linear mixed models a practical guide using statistical software

    CERN Document Server

    West, Brady T; Galecki, Andrzej T

    2006-01-01

    Simplifying the often confusing array of software programs for fitting linear mixed models (LMMs), Linear Mixed Models: A Practical Guide Using Statistical Software provides a basic introduction to primary concepts, notation, software implementation, model interpretation, and visualization of clustered and longitudinal data. This easy-to-navigate reference details the use of procedures for fitting LMMs in five popular statistical software packages: SAS, SPSS, Stata, R/S-plus, and HLM. The authors introduce basic theoretical concepts, present a heuristic approach to fitting LMMs based on bo

  5. Formulation and Validation of an Efficient Computational Model for a Dilute, Settling Suspension Undergoing Rotational Mixing

    Energy Technology Data Exchange (ETDEWEB)

    Sprague, Michael A.; Stickel, Jonathan J.; Sitaraman, Hariswaran; Crawford, Nathan C.; Fischer, Paul F.

    2017-04-11

    Designing processing equipment for the mixing of settling suspensions is a challenging problem. Achieving low-cost mixing is especially difficult for the application of slowly reacting suspended solids because the cost of impeller power consumption becomes quite high due to the long reaction times (batch mode) or due to large-volume reactors (continuous mode). Further, the usual scale-up metrics for mixing, e.g., constant tip speed and constant power per volume, do not apply well for mixing of suspensions. As an alternative, computational fluid dynamics (CFD) can be useful for analyzing mixing at multiple scales and determining appropriate mixer designs and operating parameters. We developed a mixture model to describe the hydrodynamics of a settling cellulose suspension. The suspension motion is represented as a single velocity field in a computationally efficient Eulerian framework. The solids are represented by a scalar volume-fraction field that undergoes transport due to particle diffusion, settling, fluid advection, and shear stress. A settling model and a viscosity model, both functions of volume fraction, were selected to fit experimental settling and viscosity data, respectively. Simulations were performed with the open-source Nek5000 CFD program, which is based on the high-order spectral-finite-element method. Simulations were performed for the cellulose suspension undergoing mixing in a laboratory-scale vane mixer. The settled-bed heights predicted by the simulations were in semi-quantitative agreement with experimental observations. Further, the simulation results were in quantitative agreement with experimentally obtained torque and mixing-rate data, including a characteristic torque bifurcation. In future work, we plan to couple this CFD model with a reaction-kinetics model for the enzymatic digestion of cellulose, allowing us to predict enzymatic digestion performance for various mixing intensities and novel reactor designs.

  6. Multivariate Survival Mixed Models for Genetic Analysis of Longevity Traits

    DEFF Research Database (Denmark)

    Pimentel Maia, Rafael; Madsen, Per; Labouriau, Rodrigo

    2013-01-01

    A class of multivariate mixed survival models for continuous and discrete time with a complex covariance structure is introduced in a context of quantitative genetic applications. The methods introduced can be used in many applications in quantitative genetics although the discussion presented...... concentrates on longevity studies. The framework presented allows to combine models based on continuous time with models based on discrete time in a joint analysis. The continuous time models are approximations of the frailty model in which the hazard function will be assumed to be piece-wise constant....... The discrete time models used are multivariate variants of the discrete relative risk models. These models allow for regular parametric likelihood-based inference by exploring a coincidence of their likelihood functions and the likelihood functions of suitably defined multivariate generalized linear mixed...

  7. Multivariate Survival Mixed Models for Genetic Analysis of Longevity Traits

    DEFF Research Database (Denmark)

    Pimentel Maia, Rafael; Madsen, Per; Labouriau, Rodrigo

    2014-01-01

    A class of multivariate mixed survival models for continuous and discrete time with a complex covariance structure is introduced in a context of quantitative genetic applications. The methods introduced can be used in many applications in quantitative genetics although the discussion presented...... concentrates on longevity studies. The framework presented allows to combine models based on continuous time with models based on discrete time in a joint analysis. The continuous time models are approximations of the frailty model in which the hazard function will be assumed to be piece-wise constant....... The discrete time models used are multivariate variants of the discrete relative risk models. These models allow for regular parametric likelihood-based inference by exploring a coincidence of their likelihood functions and the likelihood functions of suitably defined multivariate generalized linear mixed...

  8. Teaching Service Modelling to a Mixed Class: An Integrated Approach

    Science.gov (United States)

    Deng, Jeremiah D.; Purvis, Martin K.

    2015-01-01

    Service modelling has become an increasingly important area in today's telecommunications and information systems practice. We have adapted a Network Design course in order to teach service modelling to a mixed class of both the telecommunication engineering and information systems backgrounds. An integrated approach engaging mathematics teaching…

  9. Teaching the Mixed Model Design: A Flowchart to Facilitate Understanding.

    Science.gov (United States)

    Mills, Jamie D.

    2005-01-01

    The Mixed Model (MM) design, sometimes known as a Split-Plot design, is very popular in educational research. This model can be used to examine the effects of several independent variables on a dependent variable and it offers a more powerful alternative to the completely randomized design. The MM design considers both a between-subjects factor,…

  10. Analyzing Mixed-Dyadic Data Using Structural Equation Models

    Science.gov (United States)

    Peugh, James L.; DiLillo, David; Panuzio, Jillian

    2013-01-01

    Mixed-dyadic data, collected from distinguishable (nonexchangeable) or indistinguishable (exchangeable) dyads, require statistical analysis techniques that model the variation within dyads and between dyads appropriately. The purpose of this article is to provide a tutorial for performing structural equation modeling analyses of cross-sectional…

  11. Wax Precipitation Modeled with Many Mixed Solid Phases

    DEFF Research Database (Denmark)

    Heidemann, Robert A.; Madsen, Jesper; Stenby, Erling Halfdan

    2005-01-01

    The behavior of the Coutinho UNIQUAC model for solid wax phases has been examined. The model can produce as many mixed solid phases as the number of waxy components. In binary mixtures, the solid rich in the lighter component contains little of the heavier component but the second phase shows sub...

  12. An Interface Stretching-Diffusion Model for Mixing-Limited Reactions During Convective Mixing

    Science.gov (United States)

    Hidalgo, J. J.; Dentz, M.; Cabeza, Y.; Carrera, J.

    2014-12-01

    We study the behavior of mixing-limited dissolution reactions under the unstable flow conditions caused by a Rayleigh-Bénard convective instability in a two fluids system. The reactions produce a dissolution pattern that follows the ascending fluids's interface where the largest concentration gradients and maximum mixing are found. Contrary to other chemical systems, the mixing history engraved by the dissolution does not map out the fingering geometry of the unstable flow. The temporal scaling of the mixing Χ and the reaction rate r are explained by a stretching-diffusion model of the interface between the fluids. The model accurately reproduces the three observed regimes: a diffusive regime at which Χ, r ~ t-1/2; a convective regime of at which the interface contracts to the Batchelor scale resulting in a constant Χf and r independent of the Rayleigh number; and an attenuated convection regime in which Χ and r decay faster than diffusion as t-3/2 and t-1, respectevely, because of the decompression of the interface and weakened reactions caused by the accumulation of dissolved fluid below the interface.

  13. In vivo models of multiple myeloma (MM).

    Science.gov (United States)

    Sanchez, Eric; Chen, Haiming; Berenson, James R

    2014-06-01

    The development of the plasma cell tumor (PCT) model was the first widely accepted in vivo model of multiple myeloma (MM). Potter and colleagues used this chemically induced PCT model to study the pathophysiology of malignant plasma cells and also used it to screen anti-MM agents. Two decades later the C57BL/KaLwRij mouse strain was found to spontaneously develop MM. Testing of pamidronate using this endogenously arising MM model revealed significant reductions in MM-associated bone disease, which was subsequently confirmed in human trials in MM patients. Transgenic models have also been developed in which the MM is localized in the bone marrow causing lytic bone lesions. Experiments in a transgenic model showed that a new oral proteasome inhibitor was effective at reducing MM burden. A clinical trial later confirmed this observation and validated the model. The xenograft model has been used to grow human MM in immunocompromised mice. The xenograft models of MM have been very useful in optimizing drug schedules and doses, which have helped in the treatments given to MM patients. However, in vivo models have been criticized for having a low clinical predictive power of new chemical entities (NCEs). Despite this, the knowledge gained from in vivo models of MM has without a doubt benefited MM patients.

  14. Effects of mixing in threshold models of social behavior

    CERN Document Server

    Akhmetzhanov, Andrei R; Dushoff, Jonathan

    2013-01-01

    We consider the dynamics of an extension of the influential Granovetter model of social behavior, where individuals are affected by their personal preferences and observation of the neighbors' behavior. Individuals are arranged in a network (usually, the square lattice) and each has a state and a fixed threshold for behavior changes. We simulate the system asynchronously either by picking a random individual and either update its state or exchange it with another randomly chosen individual (mixing). We describe the dynamics analytically in the fast-mixing limit by using the mean-field approximation and investigate it mainly numerically in case of a finite mixing. We show that the dynamics converge to a manifold in state space, which determines the possible equilibria, and show how to estimate the projection of manifold by using simulated trajectories, emitted from different initial points. We show that the effects of considering the network can be decomposed into finite-neighborhood effects, and finite-mixing...

  15. Discrete symmetries and model-independent patterns of lepton mixing

    CERN Document Server

    Hernandez, D

    2012-01-01

    In the context of discrete flavor symmetries, we elaborate a method that allows one to obtain relations between the mixing parameters in a model-independent way. Under very general conditions, we show that flavor groups of the von Dyck type, that are not necessarily finite, determine the absolute values of the entries of one column of the mixing matrix. We apply our formalism to finite subgroups of the infinite von Dyck groups, such as the modular groups, and find cases that yield an excellent agreement with the best fit values for the mixing angles. We explore the Klein group as the residual symmetry of the neutrino sector and explain the permutation property that appears between the elements of the mixing matrix in this case.

  16. Discrete symmetries and model-independent patterns of lepton mixing

    Science.gov (United States)

    Hernandez, D.; Smirnov, A. Yu.

    2013-03-01

    In the context of discrete flavor symmetries, we elaborate a method that allows one to obtain relations between the mixing parameters in a model-independent way. Under very general conditions, we show that flavor groups of the von Dyck type, that are not necessarily finite, determine the absolute values of the entries of one column of the mixing matrix. We apply our formalism to finite subgroups of the infinite von Dyck groups, such as the modular groups, and find cases that yield an excellent agreement with the best fit values for the mixing angles. We explore the Klein group as the residual symmetry of the neutrino sector and explain the permutation property that appears between the elements of the mixing matrix in this case.

  17. Metapopulation epidemic models with heterogeneous mixing and travel behaviour

    CERN Document Server

    Apolloni, Andrea; Ramasco, Jose' J; Jensen, Pablo; Colizza, Vittoria

    2014-01-01

    The complex interplay between population movements in space and non-homogeneous mixing patterns have so far hindered the fundamental understanding of the conditions for spatial invasion through a general theoretical framework. To address this issue, we present an analytical modelling approach taking into account such interplay under general conditions of mobility and interactions, in the simplifying assumption of two population classes. We describe a spatially structured population with non-homogeneous mixing and travel behaviour through a multi-host stochastic epidemic metapopulation model. Different population partitions, mixing patterns and mobility structures are considered, along with a specific application for the study of the role of age partition in the early spread of the 2009 H1N1 pandemic influenza. We provide a complete mathematical formulation of the model and derive a semi-analytical expression of the threshold condition for global invasion of an emerging infectious disease in the metapopulation...

  18. Fermion masses and mixing in $\\Delta(27)$ flavour model

    CERN Document Server

    Abbas, Mohammed

    2014-01-01

    An extension of the Standard Model (SM) based on the non-Abelian discrete group $\\Delta(27)$ is considered. The $\\Delta(27)$ flavour symmetry is spontaneously broken only by gauge singlet scalar fields, therefore our model is free from any flavour changing neural current. We show that the model accounts simultaneously for the observed quark and lepton masses and their mixing. In the quark sector, we find that the up quark mass matrix is flavour diagonal and the Cabbibo-Kobayashi-Maskawa (CKM) mixing matrix arises from down quarks. In the lepton sector, we show that the charged lepton mass matrix is almost diagonal. We also adopt type-I seesaw mechanism to generate neutrino masses. A deviated mixing matrix from tri-bimaximal Maki-Nakagawa-Sakata (MNS), with $\\sin\\theta_{13} \\sim 0.13$ and $\\sin^2 \\theta_{23} \\sim 0.41$, is naturally produced.

  19. TIME SERIES FORECASTING WITH MULTIPLE CANDIDATE MODELS: SELECTING OR COMBINING?

    Institute of Scientific and Technical Information of China (English)

    YU Lean; WANG Shouyang; K. K. Lai; Y.Nakamori

    2005-01-01

    Various mathematical models have been commonly used in time series analysis and forecasting. In these processes, academic researchers and business practitioners often come up against two important problems. One is whether to select an appropriate modeling approach for prediction purposes or to combine these different individual approaches into a single forecast for the different/dissimilar modeling approaches. Another is whether to select the best candidate model for forecasting or to mix the various candidate models with different parameters into a new forecast for the same/similar modeling approaches. In this study, we propose a set of computational procedures to solve the above two issues via two judgmental criteria. Meanwhile, in view of the problems presented in the literature, a novel modeling technique is also proposed to overcome the drawbacks of existing combined forecasting methods. To verify the efficiency and reliability of the proposed procedure and modeling technique, the simulations and real data examples are conducted in this study.The results obtained reveal that the proposed procedure and modeling technique can be used as a feasible solution for time series forecasting with multiple candidate models.

  20. Mixed

    Directory of Open Access Journals (Sweden)

    Pau Baya

    2011-05-01

    Full Text Available Remenat (Catalan (Mixed, "revoltillo" (Scrambled in Spanish, is a dish which, in Catalunya, consists of a beaten egg cooked with vegetables or other ingredients, normally prawns or asparagus. It is delicious. Scrambled refers to the action of mixing the beaten egg with other ingredients in a pan, normally using a wooden spoon Thought is frequently an amalgam of past ideas put through a spinner and rhythmically shaken around like a cocktail until a uniform and dense paste is made. This malleable product, rather like a cake mixture can be deformed pulling it out, rolling it around, adapting its shape to the commands of one’s hands or the tool which is being used on it. In the piece Mixed, the contortion of the wood seeks to reproduce the plasticity of this slow heavy movement. Each piece lays itself on the next piece consecutively like a tongue of incandescent lava slowly advancing but with unstoppable inertia.

  1. Observation of Optical Undular Bores in Multiple Four-Wave Mixing

    Directory of Open Access Journals (Sweden)

    J. Fatome

    2014-05-01

    Full Text Available We demonstrate that wave-breaking dramatically affects the dynamics of nonlinear frequency conversion processes that operate in the regime of high efficiency (strong multiple four-wave mixing. In particular, by exploiting an all-optical-fiber platform, we show that input modulations propagating in standard telecom fibers in the regime of weak normal dispersion lead to the formation of undular bores (dispersive shock waves that mimic the typical behavior of dispersive hydrodynamics exhibited, e.g., by gravity waves and tidal bores. Thanks to the nonpulsed nature of the beat signal employed in our experiment, we are able to clearly observe how the periodic nature of the input modulation forces adjacent undular bores to collide elastically.

  2. Observation of Optical Undular Bores in Multiple Four-Wave Mixing

    Science.gov (United States)

    Fatome, J.; Finot, C.; Millot, G.; Armaroli, A.; Trillo, S.

    2014-04-01

    We demonstrate that wave-breaking dramatically affects the dynamics of nonlinear frequency conversion processes that operate in the regime of high efficiency (strong multiple four-wave mixing). In particular, by exploiting an all-optical-fiber platform, we show that input modulations propagating in standard telecom fibers in the regime of weak normal dispersion lead to the formation of undular bores (dispersive shock waves) that mimic the typical behavior of dispersive hydrodynamics exhibited, e.g., by gravity waves and tidal bores. Thanks to the nonpulsed nature of the beat signal employed in our experiment, we are able to clearly observe how the periodic nature of the input modulation forces adjacent undular bores to collide elastically.

  3. Variable bit rate video traffic modeling by multiplicative multifractal model

    Institute of Scientific and Technical Information of China (English)

    Huang Xiaodong; Zhou Yuanhua; Zhang Rongfu

    2006-01-01

    Multiplicative multifractal process could well model video traffic. The multiplier distributions in the multiplicative multifractal model for video traffic are investigated and it is found that Gaussian is not suitable for describing the multipliers on the small time scales. A new statistical distribution-symmetric Pareto distribution is introduced. It is applied instead of Gaussian for the multipliers on those scales. Based on that, the algorithm is updated so that symmetric pareto distribution and Gaussian distribution are used to model video traffic but on different time scales. The simulation results demonstrate that the algorithm could model video traffic more accurately.

  4. Application of Multiple Evaluation Models in Brazil

    Directory of Open Access Journals (Sweden)

    Rafael Victal Saliba

    2008-07-01

    Full Text Available Based on two different samples, this article tests the performance of a number of Value Drivers commonly used for evaluating companies by finance practitioners, through simple regression models of cross-section type which estimate the parameters associated to each Value Driver, denominated Market Multiples. We are able to diagnose the behavior of several multiples in the period 1994-2004, with an outlook also on the particularities of the economic activities performed by the sample companies (and their impacts on the performance through a subsequent analysis with segregation of companies in the sample by sectors. Extrapolating simple multiples evaluation standards from analysts of the main financial institutions in Brazil, we find that adjusting the ratio formulation to allow for an intercept does not provide satisfactory results in terms of pricing errors reduction. Results found, in spite of evidencing certain relative and absolute superiority among the multiples, may not be generically representative, given samples limitation.

  5. Multiple grass mixes as opposed to single grasses for allergen immunotherapy in allergic rhinitis.

    Science.gov (United States)

    Gangl, K; Niederberger, V; Valenta, R

    2013-11-01

    Grass pollen allergy affects approximately 40% of allergic patients. Subcutaneous allergen immunotherapy (SCIT) is the only allergen-specific and disease-modifying treatment available. Currently available therapeutic vaccines for the treatment of grass pollen allergy are based on natural grass pollen extracts which are either made from pollen of one cross-reactive grass species or from several related grass species. Clinical studies have shown that SCIT performed with timothy grass pollen extract is effective for the treatment of grass pollen allergy. Moreover, it has been demonstrated that recombinant timothy grass pollen allergens contain the majority of relevant epitopes and can be used for SCIT in clinical trials. However, recent in vitro studies have suggested that mixes consisting of allergen extracts from several related grass species may have advantages for SCIT over single allergen extracts. Here, we review current knowledge regarding the disease-relevant allergens in grass pollen allergy, available clinical studies comparing SCIT with allergen extracts from timothy grass or from mixes of several related grass species of the Pooideae subfamily, in vitro cross-reactivity studies performed with natural allergen extracts and recombinant allergens and SCIT studies performed with recombinant timothy grass pollen allergens. In vitro and clinical studies performed with natural allergen extracts reveal no relevant advantages of using multiple grass mixes as opposed to single grass pollen extracts. Several studies analysing the molecular composition of natural allergen extracts and the molecular profile of patients' immune responses after SCIT with allergen extracts indicate that the major limitation for the production of a high quality grass pollen vaccine resides in intrinsic features of natural allergen extracts which can only be overcome with recombinant allergen-based technologies.

  6. Computer modeling of ORNL storage tank sludge mobilization and mixing

    Energy Technology Data Exchange (ETDEWEB)

    Terrones, G.; Eyler, L.L.

    1993-09-01

    This report presents and analyzes the results of the computer modeling of mixing and mobilization of sludge in horizontal, cylindrical storage tanks using submerged liquid jets. The computer modeling uses the TEMPEST computational fluid dynamics computer program. The horizontal, cylindrical storage tank configuration is similar to the Melton Valley Storage Tanks (MVST) at Oak Ridge National (ORNL). The MVST tank contents exhibit non-homogeneous, non-Newtonian rheology characteristics. The eventual goals of the simulations are to determine under what conditions sludge mobilization using submerged liquid jets is feasible in tanks of this configuration, and to estimate mixing times required to approach homogeneity of the contents of the tanks.

  7. The Parisi formula for mixed p-spin models

    CERN Document Server

    Panchenko, Dmitry

    2011-01-01

    The Parisi formula for the free energy in the Sherrington-Kirkpatrick and mixed p-spin models for even p \\geq 2 was proved in the seminal work of Michel Talagrand, [24]. In this paper we prove the Parisi formula for general mixed p-spin models which also include p-spin interactions for odd p. Most of the ideas used in the paper are well known and can now be combined following a recent proof of the Parisi ultrametricity conjecture in [17].

  8. Incremental activity modeling in multiple disjoint cameras.

    Science.gov (United States)

    Loy, Chen Change; Xiang, Tao; Gong, Shaogang

    2012-09-01

    Activity modeling and unusual event detection in a network of cameras is challenging, particularly when the camera views are not overlapped. We show that it is possible to detect unusual events in multiple disjoint cameras as context-incoherent patterns through incremental learning of time delayed dependencies between distributed local activities observed within and across camera views. Specifically, we model multicamera activities using a Time Delayed Probabilistic Graphical Model (TD-PGM) with different nodes representing activities in different decomposed regions from different views and the directed links between nodes encoding their time delayed dependencies. To deal with visual context changes, we formulate a novel incremental learning method for modeling time delayed dependencies that change over time. We validate the effectiveness of the proposed approach using a synthetic data set and videos captured from a camera network installed at a busy underground station.

  9. Generalized linear mixed models modern concepts, methods and applications

    CERN Document Server

    Stroup, Walter W

    2012-01-01

    PART I The Big PictureModeling BasicsWhat Is a Model?Two Model Forms: Model Equation and Probability DistributionTypes of Model EffectsWriting Models in Matrix FormSummary: Essential Elements for a Complete Statement of the ModelDesign MattersIntroductory Ideas for Translating Design and Objectives into ModelsDescribing ""Data Architecture"" to Facilitate Model SpecificationFrom Plot Plan to Linear PredictorDistribution MattersMore Complex Example: Multiple Factors with Different Units of ReplicationSetting the StageGoals for Inference with Models: OverviewBasic Tools of InferenceIssue I: Data

  10. A brief introduction to regression designs and mixed-effects modelling by a recent convert

    OpenAIRE

    Balling, Laura Winther

    2008-01-01

    This article discusses the advantages of multiple regression designs over the factorial designs traditionally used in many psycholinguistic experiments. It is shown that regression designs are typically more informative, statistically more powerful and better suited to the analysis of naturalistic tasks. The advantages of including both fixed and random effects are demonstrated with reference to linear mixed-effects models, and problems of collinearity, variable distribution and variable sele...

  11. A system dynamics model to determine products mix

    Directory of Open Access Journals (Sweden)

    Mahtab Hajghasem

    2014-02-01

    Full Text Available This paper presents an implementation of system dynamics model to determine appropriate product mix by considering various factors such as labor, materials, overhead, etc. for an Iranian producer of cosmetic and sanitary products. The proposed model of this paper considers three hypotheses including the relationship between product mix and profitability, optimum production capacity and having minimum amount of storage to take advantage of low cost production. The implementation of system dynamics on VENSIM software package has confirmed all three hypotheses of the survey and suggested that in order to reach better mix product, it is necessary to reach optimum production planning, take advantage of all available production capacities and use inventory management techniques.

  12. A latent factor linear mixed model for high-dimensional longitudinal data analysis.

    Science.gov (United States)

    An, Xinming; Yang, Qing; Bentler, Peter M

    2013-10-30

    High-dimensional longitudinal data involving latent variables such as depression and anxiety that cannot be quantified directly are often encountered in biomedical and social sciences. Multiple responses are used to characterize these latent quantities, and repeated measures are collected to capture their trends over time. Furthermore, substantive research questions may concern issues such as interrelated trends among latent variables that can only be addressed by modeling them jointly. Although statistical analysis of univariate longitudinal data has been well developed, methods for modeling multivariate high-dimensional longitudinal data are still under development. In this paper, we propose a latent factor linear mixed model (LFLMM) for analyzing this type of data. This model is a combination of the factor analysis and multivariate linear mixed models. Under this modeling framework, we reduced the high-dimensional responses to low-dimensional latent factors by the factor analysis model, and then we used the multivariate linear mixed model to study the longitudinal trends of these latent factors. We developed an expectation-maximization algorithm to estimate the model. We used simulation studies to investigate the computational properties of the expectation-maximization algorithm and compare the LFLMM model with other approaches for high-dimensional longitudinal data analysis. We used a real data example to illustrate the practical usefulness of the model. Copyright © 2013 John Wiley & Sons, Ltd.

  13. modelling of far modelling of far-field mixing o field mixing o ambient ...

    African Journals Online (AJOL)

    User

    Moreover, the study by [19] carried out economic analysis and ... of assimilative capacity in optimal flow pollution control and concluded by drawing attention to the need to include ... support and the theory of mixing of the pollutants in the near ...

  14. The Worm Process for the Ising Model is Rapidly Mixing

    Science.gov (United States)

    Collevecchio, Andrea; Garoni, Timothy M.; Hyndman, Timothy; Tokarev, Daniel

    2016-09-01

    We prove rapid mixing of the worm process for the zero-field ferromagnetic Ising model, on all finite connected graphs, and at all temperatures. As a corollary, we obtain a fully-polynomial randomized approximation scheme for the Ising susceptibility, and for a certain restriction of the two-point correlation function.

  15. The 4s web-marketing mix model

    NARCIS (Netherlands)

    Constantinides, Efthymios

    2002-01-01

    This paper reviews the criticism on the 4Ps Marketing Mix framework, the most popular tool of traditional marketing management, and categorizes the main objections of using the model as the foundation of physical marketing. It argues that applying the traditional approach, based on the 4Ps paradigm,

  16. The 4s web-marketing mix model

    NARCIS (Netherlands)

    Constantinides, Efthymios

    2002-01-01

    This paper reviews the criticism on the 4Ps Marketing Mix framework, the most popular tool of traditional marketing management, and categorizes the main objections of using the model as the foundation of physical marketing. It argues that applying the traditional approach, based on the 4Ps paradigm,

  17. Development of stable isotope mixing models in ecology - Fremantle

    Science.gov (United States)

    More than 40 years ago, stable isotope analysis methods used in geochemistry began to be applied to ecological studies. One common application is using mathematical mixing models to sort out the proportional contributions of various sources to a mixture. Examples include contri...

  18. Development of stable isotope mixing models in ecology - Dublin

    Science.gov (United States)

    More than 40 years ago, stable isotope analysis methods used in geochemistry began to be applied to ecological studies. One common application is using mathematical mixing models to sort out the proportional contributions of various sources to a mixture. Examples include contri...

  19. Historical development of stable isotope mixing models in ecology

    Science.gov (United States)

    More than 40 years ago, stable isotope analysis methods used in geochemistry began to be applied to ecological studies. One common application is using mathematical mixing models to sort out the proportional contributions of various sources to a mixture. Examples include contri...

  20. Development of stable isotope mixing models in ecology - Sydney

    Science.gov (United States)

    More than 40 years ago, stable isotope analysis methods used in geochemistry began to be applied to ecological studies. One common application is using mathematical mixing models to sort out the proportional contributions of various sources to a mixture. Examples include contri...

  1. Development of stable isotope mixing models in ecology - Perth

    Science.gov (United States)

    More than 40 years ago, stable isotope analysis methods used in geochemistry began to be applied to ecological studies. One common application is using mathematical mixing models to sort out the proportional contributions of various sources to a mixture. Examples include contri...

  2. Sensitivity Analysis of Mixed Models for Incomplete Longitudinal Data

    Science.gov (United States)

    Xu, Shu; Blozis, Shelley A.

    2011-01-01

    Mixed models are used for the analysis of data measured over time to study population-level change and individual differences in change characteristics. Linear and nonlinear functions may be used to describe a longitudinal response, individuals need not be observed at the same time points, and missing data, assumed to be missing at random (MAR),…

  3. Longitudinal mixed-effects models for latent cognitive function

    NARCIS (Netherlands)

    Hout, van den Ardo; Fox, Jean-Paul; Muniz-Terrera, Graciela

    2015-01-01

    A mixed-effects regression model with a bent-cable change-point predictor is formulated to describe potential decline of cognitive function over time in the older population. For the individual trajectories, cognitive function is considered to be a latent variable measured through an item response t

  4. COMBINING SOURCES IN STABLE ISOTOPE MIXING MODELS: ALTERNATIVE METHODS

    Science.gov (United States)

    Stable isotope mixing models are often used to quantify source contributions to a mixture. Examples include pollution source identification; trophic web studies; analysis of water sources for soils, plants, or water bodies; and many others. A common problem is having too many s...

  5. Comparing Bayesian stable isotope mixing models: Which tools are best for sediments?

    Science.gov (United States)

    Morris, David; Macko, Stephen

    2016-04-01

    Bayesian stable isotope mixing models have received much attention as a means of coping with multiple sources and uncertainty in isotope ecology (e.g. Phillips et al., 2014), enabling the probabilistic determination of the contributions made by each food source to the total diet of the organism in question. We have applied these techniques to marine sediments for the first time. The sediments of the Chukchi Sea and Beaufort Sea offer an opportunity to utilize these models for organic geochemistry, as there are three likely sources of organic carbon; pelagic phytoplankton, sea ice algae and terrestrial material from rivers and coastal erosion, as well as considerable variation in the marine δ13C values. Bayesian mixing models using bulk δ13C and δ15N data from Shelf Basin Interaction samples allow for the probabilistic determination of the contributions made by each of the sources to the organic carbon budget, and can be compared with existing source contribution estimates based upon biomarker models (e.g. Belicka & Harvey, 2009, Faux, Belicka, & Rodger Harvey, 2011). The δ13C of this preserved material varied from -22.1 to -16.7‰ (mean -19.4±1.3‰), while δ15N varied from 4.1 to 7.6‰ (mean 5.7±1.1‰). Using the SIAR model, we found that water column productivity was the source of between 50 and 70% of the organic carbon buried in this portion of the western Arctic with the remainder mainly supplied by sea ice algal productivity (25-35%) and terrestrial inputs (15%). With many mixing models now available, this study will compare SIAR with MixSIAR and the new FRUITS model. Monte Carlo modeling of the mixing polygon will be used to validate the models, and hierarchical models will be utilised to glean more information from the data set.

  6. Practical likelihood analysis for spatial generalized linear mixed models

    DEFF Research Database (Denmark)

    Bonat, W. H.; Ribeiro, Paulo Justiniano

    2016-01-01

    We investigate an algorithm for maximum likelihood estimation of spatial generalized linear mixed models based on the Laplace approximation. We compare our algorithm with a set of alternative approaches for two datasets from the literature. The Rhizoctonia root rot and the Rongelap are, respectiv......We investigate an algorithm for maximum likelihood estimation of spatial generalized linear mixed models based on the Laplace approximation. We compare our algorithm with a set of alternative approaches for two datasets from the literature. The Rhizoctonia root rot and the Rongelap are...... of Laplace approximation include the computation of the maximized log-likelihood value, which can be used for model selection and tests, and the possibility to obtain realistic confidence intervals for model parameters based on profile likelihoods. The Laplace approximation also avoids the tuning...

  7. Low-order models of biogenic ocean mixing

    Science.gov (United States)

    Dabiri, J. O.; Rosinelli, D.; Koumoutsakos, P.

    2009-12-01

    Biogenic ocean mixing, the process whereby swimming animals may affect ocean circulation, has primarily been studied using order-of-magnitude theoretical estimates and a small number of field observations. We describe numerical simulations of arrays of simplified animal shapes migrating in inviscid fluid and at finite Reynolds numbers. The effect of density stratification is modeled in the fluid dynamic equations of motion by a buoyancy acceleration term, which arises due to perturbations to the density field by the migrating bodies. The effects of fluid viscosity, body spacing, and array configuration are investigated to identify scenarios in which a meaningful contribution to ocean mixing by swimming animals is plausible.

  8. Dynamic Behaviors of Mix-game Model and Its Applications

    CERN Document Server

    Gou, C

    2005-01-01

    This paper proposes a modification to Minority Game (MG) by adding some agents who play majority game into MG. So it is referred to as Mix-game. Through simulations, this paper finds out that the fluctuations of local volatilities change a lot by adding some agents who play majority game into MG, but the stylized features of MG do not change obviously except agents with memory length 1 and2. This paper also uses mix-game to model Shanghai stock market and to do prediction about Shanghai index.

  9. Quark mixing in the discrete dark matter model

    CERN Document Server

    Toorop, Reinier de Adelhart; Morisi, Stefano

    2011-01-01

    We consider a model in which dark matter is stable as it is charged under a Z2 symmetry that is residual after an A4 flavour symmetry is broken. We consider the possibility to generate the quark masses by charging the quarks appropriately under A4. We find that it is possible to generate the CKM mixing matrix by an interplay of renormalisable and dimension-six operators. In this set-up, we predict the third neutrino mixing angle to be large and the dark matter relic density to be in the correct range. However, low energy observables - in particular meson-antimeson oscillations - strongly limit the available parameter space.

  10. Modeling condensation with a noncondensable gas for mixed convection flow

    Science.gov (United States)

    Liao, Yehong

    2007-05-01

    This research theoretically developed a novel mixed convection model for condensation with a noncondensable gas. The model developed herein is comprised of three components: a convection regime map; a mixed convection correlation; and a generalized diffusion layer model. These components were developed in a way to be consistent with the three-level methodology in MELCOR. The overall mixed convection model was implemented into MELCOR and satisfactorily validated with data covering a wide variety of test conditions. In the development of the convection regime map, two analyses with approximations of the local similarity method were performed to solve the multi-component two-phase boundary layer equations. The first analysis studied effects of the bulk velocity on a basic natural convection condensation process and setup conditions to distinguish natural convection from mixed convection. It was found that the superimposed velocity increases condensation heat transfer by sweeping away the noncondensable gas accumulated at the condensation boundary. The second analysis studied effects of the buoyancy force on a basic forced convection condensation process and setup conditions to distinguish forced convection from mixed convection. It was found that the superimposed buoyancy force increases condensation heat transfer by thinning the liquid film thickness and creating a steeper noncondensable gas concentration profile near the condensation interface. In the development of the mixed convection correlation accounting for suction effects, numerical data were obtained from boundary layer analysis for the three convection regimes and used to fit a curve for the Nusselt number of the mixed convection regime as a function of the Nusselt numbers of the natural and forced convection regimes. In the development of the generalized diffusion layer model, the driving potential for mass transfer was expressed as the temperature difference between the bulk and the liquid-gas interface

  11. Fluctuations in a mixed IS-LM business cycle model

    Directory of Open Access Journals (Sweden)

    Hamad Talibi Alaoui

    2008-09-01

    Full Text Available In the present paper, we extend a delayed IS-LM business cycle model by introducing an additional advance (anticipated capital stock in the investment function. The resulting model is represented in terms of mixed differential equations. For the deviating argument $au$ (advance and delay being a bifurcation parameter we investigate the local stability and the local Hopf bifurcation. Also some numerical simulations are given to support the theoretical analysis.

  12. [download] (969dlmap: An R Package for Mixed Model QTL and Association Analysis

    Directory of Open Access Journals (Sweden)

    B. Emma Huang

    2012-08-01

    Full Text Available dlmap is a software package capable of mapping quantitative trait loci (QTL in a variety of genetic studies. Unlike most other QTL mapping packages, dlmap is built on a linear mixed model platform, and thus can simultaneously handle multiple sources of genetic and environmental variation. Furthermore, it can accommodate both experimental crosses and association mapping populations within a versatile modeling framework. The software implements a mapping algorithm with separate detection and localization stages in a user-friendly manner. It accepts data in various common formats, has a flexible modeling environment, and summarizes results both graphically and numerically.

  13. Plasma interfacial mixing layers: Comparisons of fluid and kinetic models

    Science.gov (United States)

    Vold, Erik; Yin, Lin; Taitano, William; Albright, B. J.; Chacon, Luis; Simakov, Andrei; Molvig, Kim

    2016-10-01

    We examine plasma transport across an initial discontinuity between two species by comparing fluid and kinetic models. The fluid model employs a kinetic theory approximation for plasma transport in the limit of small Knudsen number. The kinetic simulations include explicit particle-in-cell simulations (VPIC) and a new implicit Vlasov-Fokker-Planck code, iFP. The two kinetic methods are shown to be in close agreement for many aspects of the mixing dynamics at early times (to several hundred collision times). The fluid model captures some of the earliest time dynamic behavior seen in the kinetic results, and also generally agrees with iFP at late times when the total pressure gradient relaxes and the species transport is dominated by slow diffusive processes. The results show three distinct phases of the mixing: a pressure discontinuity forms across the initial interface (on times of a few collisions), the pressure perturbations propagate away from the interfacial mixing region (on time scales of an acoustic transit) and at late times the pressure relaxes in the mix region leaving a non-zero center of mass flow velocity. The center of mass velocity associated with the outward propagating pressure waves is required to conserve momentum in the rest frame. Work performed under the auspices of the U.S. DOE by the LANS, LLC, Los Alamos National Laboratory under Contract No. DE-AC52-06NA25396. Funding provided by the Advanced Simulation and Computing (ASC) Program.

  14. Mixed-ability secondary science in one urban school district: A multiple case study

    Science.gov (United States)

    Tworek, Francis A.

    The standards and accountability movements demand that all students be given the opportunity to learn more science than ever before. However, there is much uncertainty about how educators should proceed with this task. Issues of concern include achievement gaps, tracking, and graduation requirements. The purpose of this multiple case study was to explore the challenges identified by four secondary science teachers in one urban public school district as they taught classes that included students representing a wide range of abilities and prior academic success. These mixed-ability science classes were generally defined as science classes which are required for high school graduation but which have no academic prerequisites. The central research questions in this qualitative study were: (1) How do secondary science teachers describe the challenges they face while teaching a mixed-ability science course required for graduation when the course has no prerequisites; and (2) What strategies do they use to deal with these challenges? Data collection was confined to four cases within one Midwest urban school district during the 2004-2005 school year. Each case involved one class taught by an individual teacher. One case was an 8th grade science class at a middle school. The other three cases represented three district-required courses in three different high schools: 9th grade biology, 10th grade chemistry, and 11th grade physics. Data sources included interviews with the teachers, observations in their classrooms, district achievement and demographic data, and school documents. Three themes emerged from the cross-case analysis: (1) a sense of belonging; (2) the teacher's focus; and (3) successful learning. The final chapter discusses the implications of these themes and makes recommendations for further study.

  15. Simple mixing model for pressurized thermal shock applications

    Energy Technology Data Exchange (ETDEWEB)

    Chexal, B.; Chao, J.; Nickell, R.; Griesbach, T. (Electric Power Research Inst., Palo Alto, CA (USA))

    1983-02-01

    The phenomenon of fluid/thermal mixing in the cold leg and downcomer of a Pressurized Water Reactor (PWR) has been a critical issue related to the concern of pressurized thermal shock. The question of imperfect mixing arises when the possibility of cold emergency core cooling water contacting the vessel wall during an overcooling transient could produce thermal stresses large enough to initiate a flaw in a radiation embrittled vessel wall. The temperature of the fluid in contact with the vessel wall is crucial to a determination of vessel integrity since temperature affects both the stresses and the material toughness of the vessel material. A simple mixing model is described which was developed as part of the EPRI pressurized thermal shock program for evaluation of reactor vessel integrity.

  16. Dynamic behaviours of mix-game model and its application

    Institute of Scientific and Technical Information of China (English)

    Gou Cheng-Ling

    2006-01-01

    In this paper a minority game (MG) is modified by adding into it some agents who play a majority game. Such a game is referred to as a mix-game. The highlight of this model is that the two groups of agents in the mix-game have different bounded abilities to deal with historical information and to count their own performance. Through simulations,it is found that the local volatilities change a lot by adding some agents who play the majority game into the MG,and the change of local volatilities greatly depends on different combinations of historical memories of the two groups.Furthermore, the analyses of the underlying mechanisms for this finding are made. The applications of mix-game mode are also given as an example.

  17. Upscaling of Mixing Processes using a Spatial Markov Model

    Science.gov (United States)

    Bolster, Diogo; Sund, Nicole; Porta, Giovanni

    2016-11-01

    The Spatial Markov model is a model that has been used to successfully upscale transport behavior across a broad range of spatially heterogeneous flows, with most examples to date coming from applications relating to porous media. In its most common current forms the model predicts spatially averaged concentrations. However, many processes, including for example chemical reactions, require an adequate understanding of mixing below the averaging scale, which means that knowledge of subscale fluctuations, or closures that adequately describe them, are needed. Here we present a framework, consistent with the Spatial Markov modeling framework, that enables us to do this. We apply and present it as applied to a simple example, a spatially periodic flow at low Reynolds number. We demonstrate that our upscaled model can successfully predict mixing by comparing results from direct numerical simulations to predictions with our upscaled model. To this end we focus on predicting two common metrics of mixing: the dilution index and the scalar dissipation. For both metrics our upscaled predictions very closely match observed values from the DNS. This material is based upon work supported by NSF Grants EAR-1351625 and EAR-1417264.

  18. Modelling the interplay of multiple cues in prosodic focus marking

    Directory of Open Access Journals (Sweden)

    Anja Arnhold

    2017-03-01

    Full Text Available Focus marking is an important function of prosody in many languages. While many phonological accounts concentrate on fundamental frequency (F0, studies have established several additional cues to information structure. However, the relationship between these cues is rarely investigated. We simultaneously analyzed five prosodic cues to focus—F0 range, word duration, intensity, voice quality, the location of the F0 maximum, and the occurrence of pauses—in a set of 947 simple Subject Verb Object (SVO sentences uttered by 17 native speakers of Finnish. Using random forest and generalized additive mixed modelling, we investigated the systematicity of prosodic focus marking, the importance of each cue as a predictor, and their functional shape. Results indicated a highly consistent differentiation between narrow focus and givenness, marked by at least F0 range, word duration, intensity, and the location of the F0 maximum, with F0 range being the most important predictor. No cue had a linear relationship with focus condition. To account for the simultaneous significance of several predictors, we argue that these findings support treating multiple prosodic cues to focus in Finnish as correlates of prosodic phrasing. Thus, we suggest that prosodic phrasing, having multiple functions, is also marked with multiple cues to enhance communicative efficiency.

  19. Asteroid Models from Multiple Data Sources

    CERN Document Server

    Durech, J; Delbo, M; Kaasalainen, M; Viikinkoski, M

    2015-01-01

    In the past decade, hundreds of asteroid shape models have been derived using the lightcurve inversion method. At the same time, a new framework of 3-D shape modeling based on the combined analysis of widely different data sources such as optical lightcurves, disk-resolved images, stellar occultation timings, mid-infrared thermal radiometry, optical interferometry, and radar delay-Doppler data, has been developed. This multi-data approach allows the determination of most of the physical and surface properties of asteroids in a single, coherent inversion, with spectacular results. We review the main results of asteroid lightcurve inversion and also recent advances in multi-data modeling. We show that models based on remote sensing data were confirmed by spacecraft encounters with asteroids, and we discuss how the multiplication of highly detailed 3-D models will help to refine our general knowledge of the asteroid population. The physical and surface properties of asteroids, i.e., their spin, 3-D shape, densit...

  20. Mixtures of multiplicative cascade models in geochemistry

    Directory of Open Access Journals (Sweden)

    F. P. Agterberg

    2007-05-01

    Full Text Available Multifractal modeling of geochemical map data can help to explain the nature of frequency distributions of element concentration values for small rock samples and their spatial covariance structure. Useful frequency distribution models are the lognormal and Pareto distributions which plot as straight lines on logarithmic probability and log-log paper, respectively. The model of de Wijs is a simple multiplicative cascade resulting in discrete logbinomial distribution that closely approximates the lognormal. In this model, smaller blocks resulting from dividing larger blocks into parts have concentration values with constant ratios that are scale-independent. The approach can be modified by adopting random variables for these ratios. Other modifications include a single cascade model with ratio parameters that depend on magnitude of concentration value. The Turcotte model, which is another variant of the model of de Wijs, results in a Pareto distribution. Often a single straight line on logarithmic probability or log-log paper does not provide a good fit to observed data and two or more distributions should be fitted. For example, geochemical background and anomalies (extremely high values have separate frequency distributions for concentration values and for local singularity coefficients. Mixtures of distributions can be simulated by adding the results of separate cascade models. Regardless of properties of background, an unbiased estimate can be obtained of the parameter of the Pareto distribution characterizing anomalies in the upper tail of the element concentration frequency distribution or lower tail of the local singularity distribution. Computer simulation experiments and practical examples are used to illustrate the approach.

  1. Bayesian Option Pricing Using Mixed Normal Heteroskedasticity Models

    DEFF Research Database (Denmark)

    Rombouts, Jeroen V.K.; Stentoft, Lars Peter

    While stochastic volatility models improve on the option pricing error when compared to the Black-Scholes-Merton model, mispricings remain. This paper uses mixed normal heteroskedasticity models to price options. Our model allows for significant negative skewness and time varying higher order...... moments of the risk neutral distribution. Parameter inference using Gibbs sampling is explained and we detail how to compute risk neutral predictive densities taking into account parameter uncertainty. When forecasting out-of-sample options on the S&P 500 index, substantial improvements are found compared...

  2. Glueball-Quarkonium Mixing in the Quark and Chromon Model

    CERN Document Server

    Zhang, Pengming; Xie, Ju-Jun; Yoon, J H; Cho, Y M

    2016-01-01

    The Abelian decomposition of QCD which decomposes the gluons to the color neutral binding gluons (the neurons) and the colored valence gluons (the chromons) gauge independently naturally generalizes the quark model to the quark and chromon model which can play the central role in hadron spectroscopy. We discuss how the quark and chromon model describes the glueballs and the glueball-quarkonium mixing in QCD. We present the numerical analysis of glueball-quarkonium mixing in $0^{++}$, $2^{++}$, and $0^{-+}$ sectors below 2 GeV, and show that in the $0^{++}$ sector $f_0(500)$ and $f_0(1500)$, in the $2^{++}$ sector $f_2(1950)$, and in the $0^{-+}$ sector $\\eta(1405)$ and $\\eta(1475)$ could be identified as predominantly the glueball states. We discuss the physical implications of our result.

  3. Comparison of mixed layer models predictions with experimental data

    Energy Technology Data Exchange (ETDEWEB)

    Faggian, P.; Riva, G.M. [CISE Spa, Divisione Ambiente, Segrate (Italy); Brusasca, G. [ENEL Spa, CRAM, Milano (Italy)

    1997-10-01

    The temporal evolution of the PBL vertical structure for a North Italian rural site, situated within relatively large agricultural fields and almost flat terrain, has been investigated during the period 22-28 June 1993 by experimental and modellistic point of view. In particular, the results about a sunny day (June 22) and a cloudy day (June 25) are presented in this paper. Three schemes to estimate mixing layer depth have been compared, i.e. Holzworth (1967), Carson (1973) and Gryning-Batchvarova models (1990), which use standard meteorological observations. To estimate their degree of accuracy, model outputs were analyzed considering radio-sounding meteorological profiles and stability atmospheric classification criteria. Besides, the mixed layer depths prediction were compared with the estimated values obtained by a simple box model, whose input requires hourly measures of air concentrations and ground flux of {sup 222}Rn. (LN)

  4. Modelling the development of mixing height in near equatorial region

    Energy Technology Data Exchange (ETDEWEB)

    Samah, A.A. [Univ. of Malaya, Air Pollution Research Unit, Kuala Lumpur (Malaysia)

    1997-10-01

    Most current air pollution models were developed for mid-latitude conditions and as such many of the empirical parameters used were based on observations taken in the mid-latitude boundary layer which is physically different from that of the equatorial boundary layer. In the equatorial boundary layer the Coriolis parameter f is small or zero and moisture plays a more important role in the control of stability and the surface energy balance. Therefore air pollution models such as the OMLMULTI or the ADMS which were basically developed for mid-latitude conditions must be applied with some caution and would need some adaptation to properly simulate the properties of equatorial boundary layer. This work elucidates some of the problems of modelling the evolution of mixing height in the equatorial region. The mixing height estimates were compared with routine observations taken during a severe air pollution episodes in Malaysia. (au)

  5. Assessing correlation of clustered mixed outcomes from a multivariate generalized linear mixed model.

    Science.gov (United States)

    Chen, Hsiang-Chun; Wehrly, Thomas E

    2015-02-20

    The classic concordance correlation coefficient measures the agreement between two variables. In recent studies, concordance correlation coefficients have been generalized to deal with responses from a distribution from the exponential family using the univariate generalized linear mixed model. Multivariate data arise when responses on the same unit are measured repeatedly by several methods. The relationship among these responses is often of interest. In clustered mixed data, the correlation could be present between repeated measurements either within the same observer or between different methods on the same subjects. Indices for measuring such association are needed. This study proposes a series of indices, namely, intra-correlation, inter-correlation, and total correlation coefficients to measure the correlation under various circumstances in a multivariate generalized linear model, especially for joint modeling of clustered count and continuous outcomes. The proposed indices are natural extensions of the concordance correlation coefficient. We demonstrate the methodology with simulation studies. A case example of osteoarthritis study is provided to illustrate the use of these proposed indices. Copyright © 2014 John Wiley & Sons, Ltd.

  6. A marketing mix model for a complex and turbulent environment

    Directory of Open Access Journals (Sweden)

    R. B. Mason

    2007-12-01

    Full Text Available Purpose: This paper is based on the proposition that the choice of marketing tactics is determined, or at least significantly influenced, by the nature of the company’s external environment. It aims to illustrate the type of marketing mix tactics that are suggested for a complex and turbulent environment when marketing and the environment are viewed through a chaos and complexity theory lens. Design/Methodology/Approach: Since chaos and complexity theories are proposed as a good means of understanding the dynamics of complex and turbulent markets, a comprehensive review and analysis of literature on the marketing mix and marketing tactics from a chaos and complexity viewpoint was conducted. From this literature review, a marketing mix model was conceptualised.Findings: A marketing mix model considered appropriate for success in complex and turbulent environments was developed. In such environments, the literature suggests destabilising marketing activities are more effective, whereas stabilising type activities are more effective in simple, stable environments. Therefore the model proposes predominantly destabilising type tactics as appropriate for a complex and turbulent environment such as is currently being experienced in South Africa. Implications: This paper is of benefit to marketers by emphasising a new way to consider the future marketing activities of their companies. How this model can assist marketers and suggestions for research to develop and apply this model are provided. It is hoped that the model suggested will form the basis of empirical research to test its applicability in the turbulent South African environment. Originality/Value: Since businesses and markets are complex adaptive systems, using complexity theory to understand how to cope in complex, turbulent environments is necessary, but has not been widely researched. In fact, most chaos and complexity theory work in marketing has concentrated on marketing strategy, with

  7. Numerical Simulation of Multiplicity and Stability of Mixed Convection in Rotating Curved Ducts

    Directory of Open Access Journals (Sweden)

    Wang Liqiu

    2005-01-01

    Full Text Available A numerical study is made on the fully developed bifurcation structure and stability of the mixed convection in rotating curved ducts of square cross-section with the emphasis on the effect of buoyancy force. The rotation can be positive or negative. The fluid can be heated or cooled. The study reveals the rich solution and flow structures and complicated stability features. One symmetric and two symmetric/asymmetric solution branches are found with seventy five limit points and fourteen bifurcation points. The flows on these branches can be symmetric, asymmetric, 2-cell, and up to 14-cell structures. Dynamic responses of the multiple solutions to finite random disturbances are examined by the direct transient computation. It is found that possible physically realizable fully developed flows evolve, as the variation of buoyancy force, from a stable steady multicell state at a large buoyancy force of cooling to the coexistence of three stable steady multicell states, a temporal periodic oscillation state, the coexistence of periodic oscillation and chaotic oscillation, a chaotic temporal oscillation, a subharmonic-bifurcation-driven asymmetric oscillating state, and a stable steady 2-cell state at large buoyancy force of heating.

  8. Water diffusion in bicelles and the mixed bicelle model.

    Science.gov (United States)

    Soong, Ronald; Macdonald, Peter M

    2009-01-06

    To test a prediction of the mixed bicelle model, stimulated echo (STE) pulsed field gradient (PFG) (1)H nuclear magnetic resonance (NMR) measurements of water diffusion between and across bicellar lamellae were performed in positively and negatively magnetically aligned bicelles, composed of mixtures of DHPC (1,2-dihexanoyl-sn-glycero-3-phosphocholine) and DMPC (1,2-dimyristoyl-sn-glycero-3-phosphocholine), as a function of temperature and of the proportion of added short-chain lipid DHPC. (31)P NMR spectra obtained for each situation confirmed that the DHPC undergoes fast exchange between curved and planar regions as per the mixed bicelle model and permitted an estimate of the proportion of the two DHPC populations. Water diffusion across the bicellar lamellae was shown to scale directly with q*, the fraction of edge versus planar phospholipid, rather than simply the ratio q, the global fraction of long-chain to short-chain phospholipid. Geometric modeling of the dependence of water diffusion on q* suggested an upper limit of 400 A for the size of DHPC-rich toroidal perforations within the bicelle lamellae. These findings constitute an independent confirmation of the mixed bicelle model in which DHPC is not confined to edge regions but enjoys, instead, a finite miscibility with DMPC.

  9. Fermion Masses and Mixing in General Warped Extra Dimensional Models

    CERN Document Server

    Frank, Mariana; Pourtolami, Nima; Toharia, Manuel

    2015-01-01

    We analyze fermion masses and mixing in a general warped extra dimensional model, where all the Standard Model (SM) fields, including the Higgs, are allowed to propagate in the bulk. In this context, a slightly broken flavor symmetry imposed universally on all fermion fields, without distinction, can generate the full flavor structure of the SM, including quarks, charged leptons and neutrinos. For quarks and charged leptons, the exponential sensitivity of their wave-functions to small flavor breaking effects yield naturally hierarchical masses and mixing as it is usual in warped models with fermions in the bulk. In the neutrino sector, the exponential wave-function factors can be flavor-blind and thus insensitive to the small flavor symmetry breaking effects, directly linking their masses and mixing angles to the flavor symmetric structure of the 5D neutrino Yukawa couplings. The Higgs must be localized in the bulk and the model is naturally more successful in generalized warped scenarios where the metric bac...

  10. Fermion masses and mixing in general warped extra dimensional models

    Science.gov (United States)

    Frank, Mariana; Hamzaoui, Cherif; Pourtolami, Nima; Toharia, Manuel

    2015-06-01

    We analyze fermion masses and mixing in a general warped extra dimensional model, where all the Standard Model (SM) fields, including the Higgs, are allowed to propagate in the bulk. In this context, a slightly broken flavor symmetry imposed universally on all fermion fields, without distinction, can generate the full flavor structure of the SM, including quarks, charged leptons and neutrinos. For quarks and charged leptons, the exponential sensitivity of their wave functions to small flavor breaking effects yield hierarchical masses and mixing as it is usual in warped models with fermions in the bulk. In the neutrino sector, the exponential wave-function factors can be flavor blind and thus insensitive to the small flavor symmetry breaking effects, directly linking their masses and mixing angles to the flavor symmetric structure of the five-dimensional neutrino Yukawa couplings. The Higgs must be localized in the bulk and the model is more successful in generalized warped scenarios where the metric background solution is different than five-dimensional anti-de Sitter (AdS5 ). We study these features in two simple frameworks, flavor complimentarity and flavor democracy, which provide specific predictions and correlations between quarks and leptons, testable as more precise data in the neutrino sector becomes available.

  11. Nanoroughness localization of excitons in GaAs multiple quantum wells studied by transient four-wave mixing

    DEFF Research Database (Denmark)

    Birkedal, Dan; Vadim, Lyssenko; Pantke, Karl-Heinz

    1995-01-01

    The interface roughness on a nanometer scale plays a decisive role in dephasing of excitons in GaAs multiple quantum wells. The excitonic four-wave mixing signal shows a free polarization decay and a corresponding homogeneously broadened line from areas with interface roughness on a scale larger ...

  12. A mixed model reduction method for preserving selected physical information

    Science.gov (United States)

    Zhang, Jing; Zheng, Gangtie

    2017-03-01

    A new model reduction method in the frequency domain is presented. By mixedly using the model reduction techniques from both the time domain and the frequency domain, the dynamic model is condensed to selected physical coordinates, and the contribution of slave degrees of freedom is taken as a modification to the model in the form of effective modal mass of virtually constrained modes. The reduced model can preserve the physical information related to the selected physical coordinates such as physical parameters and physical space positions of corresponding structure components. For the cases of non-classical damping, the method is extended to the model reduction in the state space but still only contains the selected physical coordinates. Numerical results are presented to validate the method and show the effectiveness of the model reduction.

  13. Mixed-Membership Stochastic Block-Models for Transactional Networks

    CERN Document Server

    Shafiei, Mahdi

    2010-01-01

    Transactional network data can be thought of as a list of one-to-many communications(e.g., email) between nodes in a social network. Most social network models convert this type of data into binary relations between pairs of nodes. We develop a latent mixed membership model capable of modeling richer forms of transactional network data, including relations between more than two nodes. The model can cluster nodes and predict transactions. The block-model nature of the model implies that groups can be characterized in very general ways. This flexible notion of group structure enables discovery of rich structure in transactional networks. Estimation and inference are accomplished via a variational EM algorithm. Simulations indicate that the learning algorithm can recover the correct generative model. Interesting structure is discovered in the Enron email dataset and another dataset extracted from the Reddit website. Analysis of the Reddit data is facilitated by a novel performance measure for comparing two soft ...

  14. Renormalisation running of masses and mixings in UED models

    CERN Document Server

    Cornell, A S; Liu, Lu-Xin; Tarhini, Ahmad

    2012-01-01

    We review the Universal Extra-Dimensional Model compactified on a S1/Z2 orbifold, and the renormalisation group evolution of quark and lepton masses, mixing angles and phases both in the UED extension of the Standard Model and of the Minimal Supersymmetric Standard Model. We consider two typical scenarios: all matter fields propagating in the bulk, and matter fields constrained to the brane. The resulting renormalisation group evolution equations in these scenarios are compared with the existing results in the literature, together with their implications.

  15. Modelling of the Self Sum-Frequency-Mixing Laser

    Institute of Scientific and Technical Information of China (English)

    CHEN Xue-Yuan; LUO Zun-Du; HUANG Yi-Dong

    2001-01-01

    A theoretical model of the self sum-frequency-mixing (SFM) laser generated by a single crystal is proposed, in which spatial distribution of the pump and circulating fundamental lasers with arbitrary beam waists are taken into account. The model is then applied to two kinds of crystals of current interest, Nd:YAl3(BO3)4 and Nd:Ca4 GdO(BO3 )a. Numerical analyses of the self-SFM laser properties predict and confirm some experimental results. The model proposed is not limited to self-SFM lasers and may be applied to general analyses of the fundamental or nonlinear laser generation with Gaussian beams.

  16. A Non-Fickian Mixing Model for Stratified Turbulent Flows

    Science.gov (United States)

    2013-09-30

    Berselli et al., 2011) and in ocean models ( Marques and Özgökmen, 2012). Our approach in Özgökmen et al. (2012) is perhaps the first truly multi-scale...Transport in Star Eddies: Star eddies have been observed from MODIS SST images in both the summer 2011 and winter 2012 LatMix cruises. I have...published, refereed]. Marques , G.M. and T.M. Özgökmen: On modeling the turbulent exchange in buoyancy-driven fronts. Ocean Modelling [submitted

  17. Multiple Temperature Model for Near Continuum Flows

    Energy Technology Data Exchange (ETDEWEB)

    XU, Kun; Liu, Hongwei [Hong Kong University of Science and Technology, Kowloon (Hong Kong); Jiang, Jianzheng [Chinese Academy ofSciences, Beijing (China)

    2007-09-15

    In the near continuum flow regime, the flow may have different translational temperatures in different directions. It is well known that for increasingly rarefied flow fields, the predictions from continuum formulation, such as the Navier-Stokes equations, lose accuracy. These inaccuracies may be partially due to the single temperature assumption in the Navier-Stokes equations. Here, based on the gas-kinetic Bhatnagar-Gross-Krook (BGK) equation, a multitranslational temperature model is proposed and used in the flow calculations. In order to fix all three translational temperatures, two constraints are additionally proposed to model the energy exchange in different directions. Based on the multiple temperature assumption, the Navier-Stokes relation between the stress and strain is replaced by the temperature relaxation term, and the Navier-Stokes assumption is recovered only in the limiting case when the flow is close to the equilibrium with the same temperature in different directions. In order to validate the current model, both the Couette and Poiseuille flows are studied in the transition flow regime.

  18. Analysis of mixed model in gear transmission based on ADAMS

    Science.gov (United States)

    Li, Xiufeng; Wang, Yabin

    2012-09-01

    The traditional method of mechanical gear driving simulation includes gear pair method and solid to solid contact method. The former has higher solving efficiency but lower results accuracy; the latter usually obtains higher precision of results while the calculation process is complex, also it is not easy to converge. Currently, most of the researches are focused on the description of geometric models and the definition of boundary conditions. However, none of them can solve the problems fundamentally. To improve the simulation efficiency while ensure the results with high accuracy, a mixed model method which uses gear tooth profiles to take the place of the solid gear to simulate gear movement is presented under these circumstances. In the process of modeling, build the solid models of the mechanism in the SolidWorks firstly; Then collect the point coordinates of outline curves of the gear using SolidWorks API and create fit curves in Adams based on the point coordinates; Next, adjust the position of those fitting curves according to the position of the contact area; Finally, define the loading conditions, boundary conditions and simulation parameters. The method provides gear shape information by tooth profile curves; simulates the mesh process through tooth profile curve to curve contact and offer mass as well as inertia data via solid gear models. This simulation process combines the two models to complete the gear driving analysis. In order to verify the validity of the method presented, both theoretical derivation and numerical simulation on a runaway escapement are conducted. The results show that the computational efficiency of the mixed model method is 1.4 times over the traditional method which contains solid to solid contact. Meanwhile, the simulation results are more closely to theoretical calculations. Consequently, mixed model method has a high application value regarding to the study of the dynamics of gear mechanism.

  19. Maximal atmospheric neutrino mixing in an SU(5) model

    Science.gov (United States)

    Grimus, W.; Lavoura, L.

    2003-05-01

    We show that maximal atmospheric and large solar neutrino mixing can be implemented in SU(5) gauge theories, by making use of the U(1) F symmetry associated with a suitably defined family number F, together with a Z2 symmetry which does not commute with F. U(1) F is softly broken by the mass terms of the right-handed neutrino singlets, which are responsible for the seesaw mechanism; in additio n, U(1) F is also spontaneously broken at the electroweak scale. In our scenario, lepton mixing stems exclusively from the right-handed-neutrino Majorana mass matrix, whereas the CKM matrix originates solely in the up-type-quark sector. We show that, despite the non-supersymmetric character of our model, unification of the gauge couplings can be achieved at a scale 1016 GeV particula r solution to this problem which yields results almost identical to the ones of the minimal supersymmetric standard model.

  20. Including source uncertainty and prior information in the analysis of stable isotope mixing models.

    Science.gov (United States)

    Ward, Eric J; Semmens, Brice X; Schindler, Daniel E

    2010-06-15

    Stable isotope mixing models offer a statistical framework for estimating the contribution of multiple sources (such as prey) to a mixture distribution. Recent advances in these models have estimated the source proportions using Bayesian methods, but have not explicitly accounted for uncertainty in the mean and variance of sources. We demonstrate that treating these quantities as unknown parameters can reduce bias in the estimated source contributions, although model complexity is increased (thereby increasing the variance of estimates). The advantages of this fully Bayesian approach are particularly apparent when the source geometry is poor or sample sizes are small. A second benefit to treating source quantities as parameters is that prior source information can be included. We present findings from 9 lake food-webs, where the consumer of interest (fish) has a diet composed of 5 sources: aquatic insects, snails, zooplankton, amphipods, and terrestrial insects. We compared the traditional Bayesian stable isotope mixing model with fixed source parameters to our fully Bayesian model-with and without an informative prior. The informative prior has much less impact than the choice of model-the traditional mixing model with fixed source parameters estimates the diet to be dominated by aquatic insects, while the fully Bayesian model estimates the diet to be more balanced but with greater importance of zooplankton. The findings from this example demonstrate that there can be stark differences in inference between the two model approaches, particularly when the source geometry of the mixing model is poor. These analyses also emphasize the importance of investing substantial effort toward characterizing the variation in the isotopic characteristics of source pools to appropriately quantify uncertainties in their contributions to consumers in food webs.

  1. Shell Model Depiction of Isospin Mixing in sd Shell

    Energy Technology Data Exchange (ETDEWEB)

    Lam, Yi Hua; Smirnova, Nadya A. [CENBG (CNRS/IN2P3 - Universite Bordeaux 1) Chemin du Solarium, 33175 Gradignan (France); Caurier, Etienne [IPHC, IN2P3-CNRS et Universite Louis Pasteur, 67037 Strasbourg (France)

    2011-11-30

    We constructed a new empirical isospin-symmetry breaking (ISB) Hamiltonian in the sd(1s{sub 1/2}, 0d{sub 5/2} and 0d{sub 3/2}) shell-model space. In this contribution, we present its application to two important case studies: (i){beta}-delayed proton emission from {sup 22}Al and (ii) isospin-mixing correction to superallowed 0{sup +}{yields}0{sup +}{beta}-decay ft-values.

  2. The 4s web-marketing mix model

    OpenAIRE

    Constantinides, Efthymios

    2002-01-01

    This paper reviews the criticism on the 4Ps Marketing Mix framework, the most popular tool of traditional marketing management, and categorizes the main objections of using the model as the foundation of physical marketing. It argues that applying the traditional approach, based on the 4Ps paradigm, is also a poor choice in the case of virtual marketing and identifies two main limitations of the framework in online environments: the drastically diminished role of the Ps and the lack of any st...

  3. Eigenstates and eigenergies of seven bosonic modes mixing models

    Institute of Scientific and Technical Information of China (English)

    詹志明; 李伟斌; 杨文星

    2005-01-01

    We present the explicit analytical results of all the eigenstates and eigenvalues by using a parameter λ without the assumption of Bethe ansatz for three different kinds of seven bosonic modes mixing models. It is shown that the parameter is determined by the roots of a simple polynomial. Besides, we also accurately obtain the explicit analytical expressions of infinite eigenstates and energies without any unknown parameter.

  4. Car Delay Model near Bus Stops with Mixed Traffic Flow

    OpenAIRE

    Yang Xiaobao; Huan Mei; Gao Ziyou

    2013-01-01

    This paper proposes a model for estimating car delays at bus stops under mixed traffic using probability theory and queuing theory. The roadway is divided to serve motorized and nonmotorized traffic streams. Bus stops are located on the nonmotorized lanes. When buses dwell at the stop, they block the bicycles. Thus, two conflict points between car stream and other traffic stream are identified. The first conflict point occurs as bicycles merge to the motorized lane to avoid waiting behind the...

  5. Higgs-radion mixing in stabilized brane world models

    Science.gov (United States)

    Boos, Edward E.; Bunichev, Viacheslav E.; Perfilov, Maxim A.; Smolyakov, Mikhail N.; Volobuev, Igor P.

    2015-11-01

    We consider a quartic interaction of the Higgs and Goldberger-Wise fields, which connects the mechanism of the extra dimension size stabilization with spontaneous symmetry breaking on our brane and gives rise to a coupling of the Higgs field to the radion and its KK tower. We estimate a possible influence of this coupling on the Higgs-radion mixing and study restrictions on model parameters from the LHC data.

  6. Effects of mixing in threshold models of social behavior

    Science.gov (United States)

    Akhmetzhanov, Andrei R.; Worden, Lee; Dushoff, Jonathan

    2013-07-01

    We consider the dynamics of an extension of the influential Granovetter model of social behavior, where individuals are affected by their personal preferences and observation of the neighbors’ behavior. Individuals are arranged in a network (usually the square lattice), and each has a state and a fixed threshold for behavior changes. We simulate the system asynchronously by picking a random individual and we either update its state or exchange it with another randomly chosen individual (mixing). We describe the dynamics analytically in the fast-mixing limit by using the mean-field approximation and investigate it mainly numerically in the case of finite mixing. We show that the dynamics converge to a manifold in state space, which determines the possible equilibria, and show how to estimate the projection of this manifold by using simulated trajectories, emitted from different initial points. We show that the effects of considering the network can be decomposed into finite-neighborhood effects, and finite-mixing-rate effects, which have qualitatively similar effects. Both of these effects increase the tendency of the system to move from a less-desired equilibrium to the “ground state.” Our findings can be used to probe shifts in behavioral norms and have implications for the role of information flow in determining when social norms that have become unpopular in particular communities (such as foot binding or female genital cutting) persist or vanish.

  7. Nested by design: model fitting and interpretation in a mixed model era

    National Research Council Canada - National Science Library

    Schielzeth, Holger; Nakagawa, Shinichi; Freckleton, Robert

    2013-01-01

    ...‐effects models offer a powerful framework to do so. Nested effects can usually be fitted using the syntax for crossed effects in mixed models, provided that the coding reflects implicit nesting...

  8. Mixed-Symmetry Shell-Model Calculations in Nuclear Physics

    CERN Document Server

    Gueorguiev, V G

    2010-01-01

    We consider a novel approach to the nuclear shell model. The one-dimensional harmonic oscillator in a box is used to introduce the concept of an oblique-basis shell-model theory. By implementing the Lanczos method for diagonalization of large matrices, and the Cholesky algorithm for solving generalized eigenvalue problems, the method is applied to nuclei. The mixed-symmetry basis combines traditional spherical shell-model states with SU(3) collective configurations. We test the validity of this mixed-symmetry scheme on 24Mg and 44Ti. Results for 24Mg, obtained using the Wilthental USD intersection in a space that spans less than 10% of the full-space, reproduce the binding energy within 2% as well as an accurate reproduction of the low-energy spectrum and the structure of the states - 90% overlap with the exact eigenstates. In contrast, for an m-scheme calculation, one needs about 60% of the full space to obtain compatible results. Calculations for 44Ti support the mixed-mode scheme although the pure SU(3) ca...

  9. Study on system dynamics of evolutionary mix-game models

    Science.gov (United States)

    Gou, Chengling; Guo, Xiaoqian; Chen, Fang

    2008-11-01

    Mix-game model is ameliorated from an agent-based MG model, which is used to simulate the real financial market. Different from MG, there are two groups of agents in Mix-game: Group 1 plays a majority game and Group 2 plays a minority game. These two groups of agents have different bounded abilities to deal with historical information and to count their own performance. In this paper, we modify Mix-game model by assigning the evolution abilities to agents: if the winning rates of agents are smaller than a threshold, they will copy the best strategies the other agent has; and agents will repeat such evolution at certain time intervals. Through simulations this paper finds: (1) the average winning rates of agents in Group 1 and the mean volatilities increase with the increases of the thresholds of Group 1; (2) the average winning rates of both groups decrease but the mean volatilities of system increase with the increase of the thresholds of Group 2; (3) the thresholds of Group 2 have greater impact on system dynamics than the thresholds of Group 1; (4) the characteristics of system dynamics under different time intervals of strategy change are similar to each other qualitatively, but they are different quantitatively; (5) As the time interval of strategy change increases from 1 to 20, the system behaves more and more stable and the performances of agents in both groups become better also.

  10. Multiple Retrieval Models and Regression Models for Prior Art Search

    CERN Document Server

    Lopez, Patrice

    2009-01-01

    This paper presents the system called PATATRAS (PATent and Article Tracking, Retrieval and AnalysiS) realized for the IP track of CLEF 2009. Our approach presents three main characteristics: 1. The usage of multiple retrieval models (KL, Okapi) and term index definitions (lemma, phrase, concept) for the three languages considered in the present track (English, French, German) producing ten different sets of ranked results. 2. The merging of the different results based on multiple regression models using an additional validation set created from the patent collection. 3. The exploitation of patent metadata and of the citation structures for creating restricted initial working sets of patents and for producing a final re-ranking regression model. As we exploit specific metadata of the patent documents and the citation relations only at the creation of initial working sets and during the final post ranking step, our architecture remains generic and easy to extend.

  11. Short communication: Alteration of priors for random effects in Gaussian linear mixed model

    DEFF Research Database (Denmark)

    Vandenplas, Jérémie; Christensen, Ole Fredslund; Gengler, Nicholas

    2014-01-01

    , multiple-trait predictions of lactation yields, and Bayesian approaches integrating external information into genetic evaluations) need to alter both the mean and (co)variance of the prior distributions and, to our knowledge, most software packages available in the animal breeding community do not permit......Linear mixed models, for which the prior multivariate normal distributions of random effects are assumed to have a mean equal to 0, are commonly used in animal breeding. However, some statistical analyses (e.g., the consideration of a population under selection into a genomic scheme breeding...... such alterations. Therefore, the aim of this study was to propose a method to alter both the mean and (co)variance of the prior multivariate normal distributions of random effects of linear mixed models while using currently available software packages. The proposed method was tested on simulated examples with 3...

  12. Efficient estimation of moments in linear mixed models

    CERN Document Server

    Wu, Ping; Zhu, Li-Xing; 10.3150/10-BEJ330

    2012-01-01

    In the linear random effects model, when distributional assumptions such as normality of the error variables cannot be justified, moments may serve as alternatives to describe relevant distributions in neighborhoods of their means. Generally, estimators may be obtained as solutions of estimating equations. It turns out that there may be several equations, each of them leading to consistent estimators, in which case finding the efficient estimator becomes a crucial problem. In this paper, we systematically study estimation of moments of the errors and random effects in linear mixed models.

  13. Teaching Service Modelling to a Mixed Class: An Integrated Approach

    Directory of Open Access Journals (Sweden)

    Jeremiah D. DENG

    2015-04-01

    Full Text Available Service modelling has become an increasingly important area in today's telecommunications and information systems practice. We have adapted a Network Design course in order to teach service modelling to a mixed class of both the telecommunication engineering and information systems backgrounds. An integrated approach engaging mathematics teaching with strategies such as problem-solving, visualization, and the use of examples and simulations, has been developed. From assessment on student learning outcomes, it is indicated that the proposed course delivery approach succeeded in bringing out comparable and satisfactory performance from students of different educational backgrounds.

  14. A new estimate of the parameters in linear mixed models

    Institute of Scientific and Technical Information of China (English)

    王松桂; 尹素菊

    2002-01-01

    In linear mixed models, there are two kinds of unknown parameters: one is the fixed effect, theother is the variance component. In this paper, new estimates of these parameters, called the spectral decom-position estimates, are proposed, Some important statistical properties of the new estimates are established,in particular the linearity of the estimates of the fixed effects with many statistical optimalities. A new methodis applied to two important models which are used in economics, finance, and mechanical fields. All estimatesobtained have good statistical and practical meaning.

  15. An A4 x Z4 model for neutrino mixing

    CERN Document Server

    BenTov, Yoni; Zee, A

    2012-01-01

    The A4 x U(1) flavor model of He, Keum, and Volkas is extended to provide a minimal modification to tribimaximal mixing that accommodates a nonzero reactor angle theta13 ~ 0.1. The sequestering problem is circumvented by forbidding superheavy scales and large coupling constants which would otherwise generate sizable RG flows. The model is compatible with (but does not require) a stable or metastable dark matter candidate in the form of a complex scalar field with unit charge under a discrete subgroup Z4 of the U(1) flavor symmetry.

  16. Current Status of cosmological models with mixed dark matter

    CERN Document Server

    Mikheeva, E V

    2000-01-01

    An analysis of cosmological mixed dark matter models in spatially flat Friedmann Universe with zero $\\Lambda$-term is presented. We argue that the introduction of cosmic gravity waves helps to satisfy observational constraints. The analysis of models is based on the confrontation with the mass function of clusters of galaxies and the CMB anisotropy. The implication of Press-Schechter formalism allowed to constrain $\\sigma_8=0.52 \\pm 0.01$. This normalisation of the spectrum of density perturbations has been used to calculate numerically the value of the large scale CMB anisotropy and the relative contribution of cosmological gravitational waves, T/S. We found that increasing $\\Omega_\

  17. A Gaussian Mixed Model for Learning Discrete Bayesian Networks.

    Science.gov (United States)

    Balov, Nikolay

    2011-02-01

    In this paper we address the problem of learning discrete Bayesian networks from noisy data. Considered is a graphical model based on mixture of Gaussian distributions with categorical mixing structure coming from a discrete Bayesian network. The network learning is formulated as a Maximum Likelihood estimation problem and performed by employing an EM algorithm. The proposed approach is relevant to a variety of statistical problems for which Bayesian network models are suitable - from simple regression analysis to learning gene/protein regulatory networks from microarray data.

  18. Mixed Portmanteau Test for Diagnostic Checking of Time Series Models

    Directory of Open Access Journals (Sweden)

    Sohail Chand

    2014-01-01

    Full Text Available Model criticism is an important stage of model building and thus goodness of fit tests provides a set of tools for diagnostic checking of the fitted model. Several tests are suggested in literature for diagnostic checking. These tests use autocorrelation or partial autocorrelation in the residuals to criticize the adequacy of fitted model. The main idea underlying these portmanteau tests is to identify if there is any dependence structure which is yet unexplained by the fitted model. In this paper, we suggest mixed portmanteau tests based on autocorrelation and partial autocorrelation functions of the residuals. We derived the asymptotic distribution of the mixture test and studied its size and power using Monte Carlo simulations.

  19. In vivo models of multiple system atrophy.

    Science.gov (United States)

    Fernagut, Pierre-Olivier; Ghorayeb, Imad; Diguet, Elsa; Tison, François

    2005-08-01

    Multiple system atrophy (MSA) is a sporadic adult-onset neurodegenerative disorder of unknown etiology clinically characterized by a combination of parkinsonian, pyramidal, and cerebellar signs. Levodopa-unresponsive parkinsonism is present in 80% of MSA cases, and this dominant clinical presentation (MSA-P) is associated with a combined degeneration of the substantia nigra pars compacta and the striatum in anatomically related areas. The limited knowledge of the pathophysiology of MSA and the lack of therapeutic strategies prompted the development of lesion models reproducing striatonigral degeneration, the substrate of levodopa-unresponsive parkinsonism in MSA-P. This method was carried out first in rats with two different stereotaxic strategies using either two neurotoxins ("double toxin-double lesion") or a single neurotoxin ("single toxin-double lesion"). Double-lesioned rat models showed severe motor impairment compared to those with a single nigral or striatal lesion and helped to mimic different stages of the disease. Systemic models were also developed in mice and primates using the nigral toxin 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (MPTP) and the striatal toxin 3-nitropropionic (3-NP). In mice, although MPTP reduced the subsequent sensitivity to 3-NP in a sequential lesion, simultaneous nigral and striatal insults were shown to exacerbate striatal damage. MPTP-treated monkeys displayed a significant worsening of parkinsonism and a loss of levodopa-responsiveness after the appearance of hindlimb dystonia and striatal lesion formation induced by subsequent 3-NP intoxication. The different species and intoxication paradigms used will be useful to investigate functional changes in substantia nigra and striatum and to define neuroprotective, neurorestorative, or symptomatic therapeutic strategies.

  20. Modeling the oxygen uptake kinetics during exercise testing of patients with chronic obstructive pulmonary diseases using nonlinear mixed models

    Directory of Open Access Journals (Sweden)

    Florent Baty

    2016-06-01

    Full Text Available Abstract Background The six-minute walk test (6MWT is commonly used to quantify exercise capacity in patients with several cardio-pulmonary diseases. Oxygen uptake ( V ̇ $\\dot {\\mathrm {V}}$ O2 kinetics during 6MWT typically follow 3 distinct phases (rest, exercise, recovery that can be modeled by nonlinear regression. Simultaneous modeling of multiple kinetics requires nonlinear mixed models methodology. To the best of our knowledge, no such curve-fitting approach has been used to analyze multiple V ̇ $\\dot {\\mathrm {V}}$ O2 kinetics in both research and clinical practice so far. Methods In the present study, we describe functionality of the R package medrc that extends the framework of the commonly used packages drc and nlme and allows fitting nonlinear mixed effects models for automated nonlinear regression modeling. The methodology was applied to a data set including 6MWT V ̇ $\\dot {\\mathrm {V}}$ O2 kinetics from 61 patients with chronic obstructive pulmonary disease (disease severity stage II to IV. The mixed effects approach was compared to a traditional curve-by-curve approach. Results A six-parameter nonlinear regression model was jointly fitted to the set of V ̇ $\\dot {\\mathrm {V}}$ O2 kinetics. Significant differences between disease stages were found regarding steady state V ̇ $\\dot {\\mathrm {V}}$ O2 during exercise, V ̇ $\\dot {\\mathrm {V}}$ O2 level after recovery and V ̇ $\\dot {\\mathrm {V}}$ O2 inflection point in the recovery phase. Estimates obtained by the mixed effects approach showed standard errors that were consistently lower as compared to the curve-by-curve approach. Conclusions Hereby we demonstrate the novelty and usefulness of this methodology in the context of physiological exercise testing.

  1. Mixed-mode oscillations in a multiple time scale phantom bursting system

    CERN Document Server

    Krupa, Maciej; Desroches, Mathieu; Clément, Frédérique

    2012-01-01

    In this work we study mixed mode oscillations in a model of secretion of GnRH (Gonadotropin Releasing Hormone). The model is a phantom burster consisting of two feedforward coupled FitzHugh-Nagumo systems, with three time scales. The forcing system (Regulator) evolves on the slowest scale and acts by moving the slow nullcline of the forced system (Secretor). There are three modes of dynamics: pulsatility (transient relaxation oscillation), surge (quasi steady state) and small oscillations related to the passage of the slow nullcline through a fold point of the fast nullcline. We derive a variety of reductions, taking advantage of the mentioned features of the system. We obtain two results; one on the local dynamics near the fold in the parameter regime corresponding to the presence of small oscillations and the other on the global dynamics, more specifically on the existence of an attracting limit cycle. Our local result is a rigorous characterization of small canards and sectors of rotation in the case of fo...

  2. The Dependence of Global Ocean Modeling on Background Diapycnal Mixing

    Directory of Open Access Journals (Sweden)

    Zengan Deng

    2014-01-01

    Full Text Available The Argo-derived background diapycnal mixing (BDM proposed by Deng et al. (in publish is introduced to and applied in Hybrid Coordinate Ocean Model (HYCOM. Sensitive experiments are carried out using HYCOM to detect the responses of ocean surface temperature and Meridional Overturning Circulation (MOC to BDM in a global context. Preliminary results show that utilizing a constant BDM, with the same order of magnitude as the realistic one, may cause significant deviation in temperature and MOC. It is found that the dependence of surface temperature and MOC on BDM is prominent. Surface temperature is decreased with the increase of BDM, because diapycnal mixing can promote the deep cold water return to the upper ocean. Comparing to the control run, more striking MOC changes can be caused by the larger variation in BDM.

  3. Detecting the violation of variance homogeneity in mixed models.

    Science.gov (United States)

    Fang, Xicheng; Li, Jialiang; Wong, Weng Kee; Fu, Bo

    2016-12-01

    Mixed-effects models are increasingly used in many areas of applied science. Despite their popularity, there is virtually no systematic approach for examining the homogeneity of the random-effects covariance structure commonly assumed for such models. We propose two tests for evaluating the homogeneity of the covariance structure assumption across subjects: one is based on the covariance matrices computed from the fitted model and the other is based on the empirical variation computed from the estimated random effects. We used simulation studies to compare performances of the two tests for detecting violations of the homogeneity assumption in the mixed-effects models and showed that they were able to identify abnormal clusters of subjects with dissimilar random-effects covariance structures; in particular, their removal from the fitted model might change the signs and the magnitudes of important predictors in the analysis. In a case study, we applied our proposed tests to a longitudinal cohort study of rheumatoid arthritis patients and compared their abilities to ascertain whether the assumption of covariance homogeneity for subject-specific random effects holds. © The Author(s) 2014.

  4. Mixing height computation from a numerical weather prediction model

    Energy Technology Data Exchange (ETDEWEB)

    Jericevic, A. [Croatian Meteorological and Hydrological Service, Zagreb (Croatia); Grisogono, B. [Univ. of Zagreb, Zagreb (Croatia). Andrija Mohorovicic Geophysical Inst., Faculty of Science

    2004-07-01

    Dispersion models require hourly values of the mixing height, H, that indicates the existence of turbulent mixing. The aim of this study was to investigate a model ability and characteristics in the prediction of H. The ALADIN, limited area numerical weather prediction (NWP) model for short-range 48-hour forecasts was used. The bulk Richardson number (R{sub iB}) method was applied to determine the height of the atmospheric boundary layer at one grid point nearest to Zagreb, Croatia. This specific location was selected because there were available radio soundings and the verification of the model could be done. Critical value of bulk Richardson number R{sub iBc}=0.3 was used. The values of H, modelled and measured, for 219 days at 12 UTC are compared, and the correlation coefficient of 0.62 is obtained. This indicates that ALADIN can be used for the calculation of H in the convective boundary layer. For the stable boundary layer (SBL), the model underestimated H systematically. Results showed that R{sub iBc} evidently increases with the increase of stability. Decoupling from the surface in the very SBL was detected, which is a consequence of the flow ease resulting in R{sub iB} becoming very large. Verification of the practical usage of the R{sub iB} method for H calculations from NWP model was performed. The necessity for including other stability parameters (e.g., surface roughness length) was evidenced. Since ALADIN model is in operational use in many European countries, this study would help the others in pre-processing NWP data for input to dispersion models. (orig.)

  5. Box-Cox Mixed Logit Model for Travel Behavior Analysis

    Science.gov (United States)

    Orro, Alfonso; Novales, Margarita; Benitez, Francisco G.

    2010-09-01

    To represent the behavior of travelers when they are deciding how they are going to get to their destination, discrete choice models, based on the random utility theory, have become one of the most widely used tools. The field in which these models were developed was halfway between econometrics and transport engineering, although the latter now constitutes one of their principal areas of application. In the transport field, they have mainly been applied to mode choice, but also to the selection of destination, route, and other important decisions such as the vehicle ownership. In usual practice, the most frequently employed discrete choice models implement a fixed coefficient utility function that is linear in the parameters. The principal aim of this paper is to present the viability of specifying utility functions with random coefficients that are nonlinear in the parameters, in applications of discrete choice models to transport. Nonlinear specifications in the parameters were present in discrete choice theory at its outset, although they have seldom been used in practice until recently. The specification of random coefficients, however, began with the probit and the hedonic models in the 1970s, and, after a period of apparent little practical interest, has burgeoned into a field of intense activity in recent years with the new generation of mixed logit models. In this communication, we present a Box-Cox mixed logit model, original of the authors. It includes the estimation of the Box-Cox exponents in addition to the parameters of the random coefficients distribution. Probability of choose an alternative is an integral that will be calculated by simulation. The estimation of the model is carried out by maximizing the simulated log-likelihood of a sample of observed individual choices between alternatives. The differences between the predictions yielded by models that are inconsistent with real behavior have been studied with simulation experiments.

  6. Application of a mixing-ratios based formulation to model mixing-driven dissolution experiments

    Science.gov (United States)

    Guadagnini, Alberto; Sanchez-Vila, Xavier; Saaltink, Maarten W.; Bussini, Michele; Berkowitz, Brian

    2009-05-01

    We address the question of how one can combine theoretical and numerical modeling approaches with limited measurements from laboratory flow cell experiments to realistically quantify salient features of complex mixing-driven multicomponent reactive transport problems in porous media. Flow cells are commonly used to examine processes affecting reactive transport through porous media, under controlled conditions. An advantage of flow cells is their suitability for relatively fast and reliable experiments, although measuring spatial distributions of a state variable within the cell is often difficult. In general, fluid is sampled only at the flow cell outlet, and concentration measurements are usually interpreted in terms of integrated reaction rates. In reactive transport problems, however, the spatial distribution of the reaction rates within the cell might be more important than the bulk integrated value. Recent advances in theoretical and numerical modeling of complex reactive transport problems [De Simoni M, Carrera J, Sanchez-Vila X, Guadagnini A. A procedure for the solution of multicomponent reactive transport problems. Water Resour Res 2005;41:W11410. doi: 10.1029/2005WR004056, De Simoni M, Sanchez-Vila X, Carrera J, Saaltink MW. A mixing ratios-based formulation for multicomponent reactive transport. Water Resour Res 2007;43:W07419. doi: 10.1029/2006WR005256] result in a methodology conducive to a simple exact expression for the space-time distribution of reaction rates in the presence of homogeneous or heterogeneous reactions in chemical equilibrium. The key points of the methodology are that a general reactive transport problem, involving a relatively high number of chemical species, can be formulated in terms of a set of decoupled partial differential equations, and the amount of reactants evolving into products depends on the rate at which solutions mix. The main objective of the current study is to show how this methodology can be used in conjunction

  7. Resolution of a Challenge for Solvation Modeling: Calculation of Dicarboxylic Acid Dissociation Constants Using Mixed Discrete-Continuum Solvation Models

    Energy Technology Data Exchange (ETDEWEB)

    Marenich, Aleksandr; Ding, Wendu; Cramer, Christopher J.; Truhlar, Donald G.

    2012-06-07

    First and second dissociation constants (pKa values) of oxalic acid, malonic acid, and adipic acid were computed by using a number of theoretical protocols based on density functional theory and using both continuum solvation models and mixed discrete-continuum solvation models. We show that fully implicit solvation models (in which the entire solvent is represented by a dielectric continuum) fail badly for dicarboxylic acids with mean unsigned errors averaged over six pKa values) of 2.4-9.0 log units, depending on the particular implicit model used. The use of water-solute clusters and accounting for multiple conformations in solution significantly improve the performance of both generalized Born solvation models and models that solve the nonhomogeneous dielectric Poisson equation for bulk electrostatics. The four most successful models have mean unsigned errors of only 0.6-0.8 log units.

  8. Linear mixed models a practical guide using statistical software

    CERN Document Server

    West, Brady T; Galecki, Andrzej T

    2014-01-01

    Highly recommended by JASA, Technometrics, and other journals, the first edition of this bestseller showed how to easily perform complex linear mixed model (LMM) analyses via a variety of software programs. Linear Mixed Models: A Practical Guide Using Statistical Software, Second Edition continues to lead readers step by step through the process of fitting LMMs. This second edition covers additional topics on the application of LMMs that are valuable for data analysts in all fields. It also updates the case studies using the latest versions of the software procedures and provides up-to-date information on the options and features of the software procedures available for fitting LMMs in SAS, SPSS, Stata, R/S-plus, and HLM.New to the Second Edition A new chapter on models with crossed random effects that uses a case study to illustrate software procedures capable of fitting these models Power analysis methods for longitudinal and clustered study designs, including software options for power analyses and suggest...

  9. Mixing Study in an Unbaffled Stirred Precipitator Using LES Modelling

    Directory of Open Access Journals (Sweden)

    Murielle Bertrand

    2012-01-01

    Full Text Available This paper describes the CFD modelling of a reactor operating in the nuclear industry using LES approach. The reactor consists of an unbaffled stirred tank reactor in which plutonium precipitation reactions are carried out. The flow generated in such a precipitator is complex and there is very little information available in the literature about unbaffled reactors stirred with magnetic rod. That is why a hydrodynamic modelling has been developed using computational fluid dynamics (CFD in order to get accurate description of mixing phenomena inside the precipitator and therefore to be able to predict the solid particle properties. Due to the strong turbulence anisotropy, the turbulence transport simulation is achieved by a large eddy simulation (LES approach which gives unsteady solutions. The numerical simulations are performed in 3D using the Trio_U code developed at the Commissariat à l'Énergie Atomique. The predictive performances of the modelling are analysed through a mixing phenomena study. Both experimental and numerical studies are performed. This work shows how hydrodynamics inside the reactor can have a noticeable effect on the precipitate properties and how LES modelling is a very effective tool for the process control.

  10. Modelling rainfall amounts using mixed-gamma model for Kuantan district

    Science.gov (United States)

    Zakaria, Roslinazairimah; Moslim, Nor Hafizah

    2017-05-01

    An efficient design of flood mitigation and construction of crop growth models depend upon good understanding of the rainfall process and characteristics. Gamma distribution is usually used to model nonzero rainfall amounts. In this study, the mixed-gamma model is applied to accommodate both zero and nonzero rainfall amounts. The mixed-gamma model presented is for the independent case. The formulae of mean and variance are derived for the sum of two and three independent mixed-gamma variables, respectively. Firstly, the gamma distribution is used to model the nonzero rainfall amounts and the parameters of the distribution (shape and scale) are estimated using the maximum likelihood estimation method. Then, the mixed-gamma model is defined for both zero and nonzero rainfall amounts simultaneously. The formulae of mean and variance for the sum of two and three independent mixed-gamma variables derived are tested using the monthly rainfall amounts from rainfall stations within Kuantan district in Pahang Malaysia. Based on the Kolmogorov-Smirnov goodness of fit test, the results demonstrate that the descriptive statistics of the observed sum of rainfall amounts is not significantly different at 5% significance level from the generated sum of independent mixed-gamma variables. The methodology and formulae demonstrated can be applied to find the sum of more than three independent mixed-gamma variables.

  11. Linking effort and fishing mortality in a mixed fisheries model

    DEFF Research Database (Denmark)

    Thøgersen, Thomas Talund; Hoff, Ayoe; Frost, Hans Staby

    2012-01-01

    in fish stocks has led to overcapacity in many fisheries, leading to incentives for overfishing. Recent research has shown that the allocation of effort among fleets can play an important role in mitigating overfishing when the targeting covers a range of species (multi-species—i.e., so-called mixed...... fisheries), while simultaneously optimising the overall economic performance of the fleets. The so-called FcubEcon model, in particular, has elucidated both the biologically and economically optimal method for allocating catches—and thus effort—between fishing fleets, while ensuring that the quotas...

  12. ROBUST ESTIMATION IN PARTIAL LINEAR MIXED MODEL FOR LONGITUDINAL DATA

    Institute of Scientific and Technical Information of China (English)

    Qin Guoyou; Zhu Zhongyi

    2008-01-01

    In this article, robust generalized estimating equation for the analysis of par- tial linear mixed model for longitudinal data is used. The authors approximate the non- parametric function by a regression spline. Under some regular conditions, the asymptotic properties of the estimators are obtained. To avoid the computation of high-dimensional integral, a robust Monte Carlo Newton-Raphson algorithm is used. Some simulations are carried out to study the performance of the proposed robust estimators. In addition, the authors also study the robustness and the efficiency of the proposed estimators by simulation. Finally, two real longitudinal data sets are analyzed.

  13. Delta-tilde interpretation of standard linear mixed model results

    DEFF Research Database (Denmark)

    Brockhoff, Per Bruun; Amorim, Isabel de Sousa; Kuznetsova, Alexandra

    2016-01-01

    effects relative to the residual error and to choose the proper effect size measure. For multi-attribute bar plots of F-statistics this amounts, in balanced settings, to a simple transformation of the bar heights to get them transformed into depicting what can be seen as approximately the average pairwise...... for factors with differences in number of levels. For mixed models, where in general the relevant error terms for the fixed effects are not the pure residual error, it is suggested to base the d-prime-like interpretation on the residual error. The methods are illustrated on a multifactorial sensory profile...... inherently challenging effect size measure estimates in ANOVA settings....

  14. A brief introduction to regression designs and mixed-effects modelling by a recent convert

    DEFF Research Database (Denmark)

    Balling, Laura Winther

    2008-01-01

    This article discusses the advantages of multiple regression designs over the factorial designs traditionally used in many psycholinguistic experiments. It is shown that regression designs are typically more informative, statistically more powerful and better suited to the analysis of naturalistic...... tasks. The advantages of including both fixed and random effects are demonstrated with reference to linear mixed-effects models, and problems of collinearity, variable distribution and variable selection are discussed. The advantages of these techniques are exemplified in an analysis of a word...

  15. A model for imperfect mixing in a CSTR

    Science.gov (United States)

    Bar-Eli, Kedma; Noyes, Richard M.

    1986-09-01

    When a chemical reaction is carried out in a continuously stirred tank reactor, the behavior may be significantly affected by the efficiency with which the entering chemicals are mixed with the main contents of the reactor. We have developed a model for this effect which assumes that a feed of premixed chemicals remains for a while in totally segregated packets before they are rapidly and perfectly mixed with the rest of the system. The time of this initial segregation is affected by the efficiency of stirring in the reactor. The model has been tested by computations on a mechanism developed by Roelofs et al. for a reaction which would oscillate even in a closed system. It has also been tested by computations on the rapid autocatalytic oxidation of cerous ion by bromate in the presence of a small amount of bromide. The results are qualitatively consistent with effects observed experimentally and in computations with other models including a somewhat similar one by Kumpinsky and Epstein. More quantitative tests should recognize the difference whether two streams of chemicals enter the reactor independently or are premixed before they do so.

  16. Modeling of speed distribution for mixed bicycle traffic flow

    Directory of Open Access Journals (Sweden)

    Cheng Xu

    2015-11-01

    Full Text Available Speed is a fundamental measure of traffic performance for highway systems. There were lots of results for the speed characteristics of motorized vehicles. In this article, we studied the speed distribution for mixed bicycle traffic which was ignored in the past. Field speed data were collected from Hangzhou, China, under different survey sites, traffic conditions, and percentages of electric bicycle. The statistics results of field data show that the total mean speed of electric bicycles is 17.09 km/h, 3.63 km/h faster and 27.0% higher than that of regular bicycles. Normal, log-normal, gamma, and Weibull distribution models were used for testing speed data. The results of goodness-of-fit hypothesis tests imply that the log-normal and Weibull model can fit the field data very well. Then, the relationships between mean speed and electric bicycle proportions were proposed using linear regression models, and the mean speed for purely electric bicycles or regular bicycles can be obtained. The findings of this article will provide effective help for the safety and traffic management of mixed bicycle traffic.

  17. REGRESSION ANALYSIS OF PRODUCTIVITY USING MIXED EFFECT MODEL

    Directory of Open Access Journals (Sweden)

    Siana Halim

    2007-01-01

    Full Text Available Production plants of a company are located in several areas that spread across Middle and East Java. As the production process employs mostly manpower, we suspected that each location has different characteristics affecting the productivity. Thus, the production data may have a spatial and hierarchical structure. For fitting a linear regression using the ordinary techniques, we are required to make some assumptions about the nature of the residuals i.e. independent, identically and normally distributed. However, these assumptions were rarely fulfilled especially for data that have a spatial and hierarchical structure. We worked out the problem using mixed effect model. This paper discusses the model construction of productivity and several characteristics in the production line by taking location as a random effect. The simple model with high utility that satisfies the necessary regression assumptions was built using a free statistic software R version 2.6.1.

  18. Integrable mixing of A_{n-1} type vertex models

    CERN Document Server

    Grillo, S

    2002-01-01

    Given a family of monodromy matrices {T_u; u=1,...,K} corresponding to integrable anisotropic vertex models of A_{n_u-1}-type, we build up a related mixed vertex model by means of gluing the lattices on which they are defined, in such a way that integrability property is preserved. Algebraically, the gluing process is implemented through one dimensional representations of rectangular matrix algebras A(R_p,R_q), where R_n indicates the R-matrix associated to the standard Hopf algebra deformation of the simple Lie algebra A_{n-1}. We show that algebraic Bethe ansatz can be applied, and the resulting nested equations are identical to the ones corresponding to an A_{n-1} quasi- periodic model with n=min{n_u; u=1,...,K}.

  19. A Grand {Delta}(96) Multiplication-Sign SU(5) Flavour Model

    Energy Technology Data Exchange (ETDEWEB)

    King, Stephen F., E-mail: king@soton.ac.uk [School of Physics and Astronomy, University of Southampton, Southampton, SO17 1BJ (United Kingdom); Luhn, Christoph, E-mail: christoph.luhn@durham.ac.uk [Institute for Particle Physics Phenomenology, University of Durham, Durham, DH1 3LE (United Kingdom); Stuart, Alexander J., E-mail: a.stuart@soton.ac.uk [School of Physics and Astronomy, University of Southampton, Southampton, SO17 1BJ (United Kingdom)

    2013-02-11

    Recent results from the Daya Bay and RENO reactor experiments have measured the smallest lepton mixing angle and found it to have a value of {theta}{sub 13} Almost-Equal-To 9 Degree-Sign . This result presents a new challenge for the existing paradigms of discrete flavour symmetries which attempt to describe all quark and lepton masses and mixing angles. Here we propose a Supersymmetric Grand Unified Theory of Flavour based on {Delta}(96) Multiplication-Sign SU(5), together with a U(1) Multiplication-Sign Z{sub 3} symmetry, including a full discussion of {Delta}(96) in a convenient basis. The Grand {Delta}(96) Multiplication-Sign SU(5) Flavour Model relates the quark mixing angles and masses in the form of the Gatto-Sartori-Tonin relation and realises the Georgi-Jarlskog mass relations between the charged leptons and down-type quarks. We predict a Bi-trimaximal (not Tri-bimaximal) form of neutrino mixing matrix, which, after including charged lepton corrections with zero phase, leads to the following GUT scale predictions for the atmospheric, solar, and reactor mixing angles: {theta}{sub 23} Almost-Equal-To 36.9 Degree-Sign , {theta}{sub 12} Almost-Equal-To 32.7 Degree-Sign and {theta}{sub 13} Almost-Equal-To 9.6 Degree-Sign , in good agreement with recent global fits, and a zero Dirac CP phase {delta} Almost-Equal-To 0.

  20. Identification of Demand Models of Multiple Purchases

    OpenAIRE

    Itai Sher; Kyoo il Kim

    2012-01-01

    We study the nonparametric identification of distributions of utility functions in a multiple purchase setting with a finite number of consumers. Each utility function takes as arguments subsets or, alternatively, quantities of the multiple goods. We exploit mathematical insights from auction theory to generically identify the distribution of utility functions. We use price variation and aggregate data on the sales of each product, but not on individual level purchases or the total sales of b...

  1. Mixing height derived from the DMI-HIRLAM NWP model, and used for ETEX dispersion modelling

    Energy Technology Data Exchange (ETDEWEB)

    Soerensen, J.H.; Rasmussen, A. [Danish Meteorological Inst., Copenhagen (Denmark)

    1997-10-01

    For atmospheric dispersion modelling it is of great significance to estimate the mixing height well. Mesoscale and long-range diffusion models using output from numerical weather prediction (NWP) models may well use NWP model profiles of wind, temperature and humidity in computation of the mixing height. This is dynamically consistent, and enables calculation of the mixing height for predicted states of the atmosphere. In autumn 1994, the European Tracer Experiment (ETEX) was carried out with the objective to validate atmospheric dispersion models. The Danish Meteorological Institute (DMI) participates in the model evaluations with the Danish Emergency Response Model of the Atmosphere (DERMA) using NWP model data from the DMI version of the High Resolution Limited Area Model (HIRLAM) as well as from the global model of the European Centre for Medium-Range Weather Forecast (ECMWF). In DERMA, calculation of mixing heights are performed based on a bulk Richardson number approach. Comparing with tracer gas measurements for the first ETEX experiment, a sensitivity study is performed for DERMA. Using DMI-HIRLAM data, the study shows that optimum values of the critical bulk Richardson number in the range 0.15-0.35 are adequate. These results are in agreement with recent mixing height verification studies against radiosonde data. The fairly large range of adequate critical values is a signature of the robustness of the method. Direct verification results against observed missing heights from operational radio-sondes released under the ETEX plume are presented. (au) 10 refs.

  2. Local Genealogies in a Linear Mixed Model for Genome-wide Association Mapping in Complex Pedigreed Populations

    DEFF Research Database (Denmark)

    Sahana, Goutam; Mailund, Thomas; Lund, Mogens Sandø

    2011-01-01

    be extended to incorporate other effects in a straightforward and rigorous fashion. Here, we present a complementary approach, called ‘GENMIX (genealogy based mixed model)’ which combines advantages from two powerful GWAS methods: genealogy-based haplotype grouping and MMA. Subjects and Methods: We validated......Introduction: The state-of-the-art for dealing with multiple levels of relationship among the samples in genome-wide association studies (GWAS) is unified mixed model analysis (MMA). This approach is very flexible, can be applied to both family-based and population-based samples, and can...

  3. System dynamics of behaviour-evolutionary mix-game models

    Science.gov (United States)

    Gou, Cheng-Ling; Gao, Jie-Ping; Chen, Fang

    2010-11-01

    In real financial markets there are two kinds of traders: one is fundamentalist, and the other is a trend-follower. The mix-game model is proposed to mimic such phenomena. In a mix-game model there are two groups of agents: Group 1 plays the majority game and Group 2 plays the minority game. In this paper, we investigate such a case that some traders in real financial markets could change their investment behaviours by assigning the evolutionary abilities to agents: if the winning rates of agents are smaller than a threshold, they will join the other group; and agents will repeat such an evolution at certain time intervals. Through the simulations, we obtain the following findings: (i) the volatilities of systems increase with the increase of the number of agents in Group 1 and the times of behavioural changes of all agents; (ii) the performances of agents in both groups and the stabilities of systems become better if all agents take more time to observe their new investment behaviours; (iii) there are two-phase zones of market and non-market and two-phase zones of evolution and non-evolution; (iv) parameter configurations located within the cross areas between the zones of markets and the zones of evolution are suited for simulating the financial markets.

  4. System dynamics of behaviour-evolutionary mix-game models

    Institute of Scientific and Technical Information of China (English)

    Gou Cheng-Ling; Gao Jie-Ping; Chen Fang

    2010-01-01

    In real financial markets there are two kinds of traders:one is fundamentalist,and the other is a trend-follower.The mix-game model is proposed to mimic such phenomena.In a mix-game model there are two groups of agents:Group 1 plays the majority game and Group 2 plays the minority game.In this paper,we investigate such a case that some traders in real financial markets could change their investment behaviours by assigning the evolutionary abilities to agents:if the winning rates of agents are smaller than a threshold,they will join the other group;and agents will repeat such an evolution at certain time intervals.Through the simulations,we obtain the following findings:(i) the volatilities of systems increase with the increase of the number of agents in Group 1 and the times of behavioural changes of all agents;(ii) the performances of agents in both groups and the stabilities of systems become better if all agents take more time to observe their new investment behaviours;(iii) there are two-phase zones of market and non-market and two-phase zones of evolution and non-evolution;(iv) parameter configurations located within the cross areas between the zones of markets and the zones of evolution are suited for simulating the financial markets.

  5. Explaining clinical behaviors using multiple theoretical models.

    Science.gov (United States)

    Eccles, Martin P; Grimshaw, Jeremy M; MacLennan, Graeme; Bonetti, Debbie; Glidewell, Liz; Pitts, Nigel B; Steen, Nick; Thomas, Ruth; Walker, Anne; Johnston, Marie

    2012-10-17

    , the mean construct scores were above the mid-point on the scale with median values across the five behaviors generally being above four out of seven and the range being from 1.53 to 6.01. Across all of the theories, the highest proportion of the variance explained was always for intention and the lowest was for behavior. The Knowledge-Attitudes-Behavior Model performed poorly across all behaviors and dependent variables; CSSRM also performed poorly. For TPB, SCT, II, and LT across the five behaviors, we predicted median R2 of 25% to 42.6% for intention, 6.2% to 16% for behavioral simulation, and 2.4% to 6.3% for behavior. We operationalized multiple theories measuring across five behaviors. Continuing challenges that emerge from our work are: better specification of behaviors, better operationalization of theories; how best to appropriately extend the range of theories; further assessment of the value of theories in different settings and groups; exploring the implications of these methods for the management of chronic diseases; and moving to experimental designs to allow an understanding of behavior change.

  6. Explaining clinical behaviors using multiple theoretical models

    Directory of Open Access Journals (Sweden)

    Eccles Martin P

    2012-10-01

    the five surveys. For the predictor variables, the mean construct scores were above the mid-point on the scale with median values across the five behaviors generally being above four out of seven and the range being from 1.53 to 6.01. Across all of the theories, the highest proportion of the variance explained was always for intention and the lowest was for behavior. The Knowledge-Attitudes-Behavior Model performed poorly across all behaviors and dependent variables; CSSRM also performed poorly. For TPB, SCT, II, and LT across the five behaviors, we predicted median R2 of 25% to 42.6% for intention, 6.2% to 16% for behavioral simulation, and 2.4% to 6.3% for behavior. Conclusions We operationalized multiple theories measuring across five behaviors. Continuing challenges that emerge from our work are: better specification of behaviors, better operationalization of theories; how best to appropriately extend the range of theories; further assessment of the value of theories in different settings and groups; exploring the implications of these methods for the management of chronic diseases; and moving to experimental designs to allow an understanding of behavior change.

  7. Goodness-of-fit tests in mixed models

    KAUST Repository

    Claeskens, Gerda

    2009-05-12

    Mixed models, with both random and fixed effects, are most often estimated on the assumption that the random effects are normally distributed. In this paper we propose several formal tests of the hypothesis that the random effects and/or errors are normally distributed. Most of the proposed methods can be extended to generalized linear models where tests for non-normal distributions are of interest. Our tests are nonparametric in the sense that they are designed to detect virtually any alternative to normality. In case of rejection of the null hypothesis, the nonparametric estimation method that is used to construct a test provides an estimator of the alternative distribution. © 2009 Sociedad de Estadística e Investigación Operativa.

  8. A mixing evolution model for bidirectional microblog user networks

    Science.gov (United States)

    Yuan, Wei-Guo; Liu, Yun

    2015-08-01

    Microblogs have been widely used as a new form of online social networking. Based on the user profile data collected from Sina Weibo, we find that the number of microblog user bidirectional friends approximately corresponds with the lognormal distribution. We then build two microblog user networks with real bidirectional relationships, both of which have not only small-world and scale-free but also some special properties, such as double power-law degree distribution, disassortative network, hierarchical and rich-club structure. Moreover, by detecting the community structures of the two real networks, we find both of their community scales follow an exponential distribution. Based on the empirical analysis, we present a novel evolution network model with mixed connection rules, including lognormal fitness preferential and random attachment, nearest neighbor interconnected in the same community, and global random associations in different communities. The simulation results show that our model is consistent with real network in many topology features.

  9. Characteristics of the mixing volume model with the interactions among spatially distributed particles for Lagrangian simulations of turbulent mixing

    Science.gov (United States)

    Watanabe, Tomoaki; Nagata, Koji

    2016-11-01

    The mixing volume model (MVM), which is a mixing model for molecular diffusion in Lagrangian simulations of turbulent mixing problems, is proposed based on the interactions among spatially distributed particles in a finite volume. The mixing timescale in the MVM is derived by comparison between the model and the subgrid scale scalar variance equation. A-priori test of the MVM is conducted based on the direct numerical simulations of planar jets. The MVM is shown to predict well the mean effects of the molecular diffusion under various conditions. However, a predicted value of the molecular diffusion term is positively correlated to the exact value in the DNS only when the number of the mixing particles is larger than two. Furthermore, the MVM is tested in the hybrid implicit large-eddy-simulation/Lagrangian-particle-simulation (ILES/LPS). The ILES/LPS with the present mixing model predicts well the decay of the scalar variance in planar jets. This work was supported by JSPS KAKENHI Nos. 25289030 and 16K18013. The numerical simulations presented in this manuscript were carried out on the high performance computing system (NEC SX-ACE) in the Japan Agency for Marine-Earth Science and Technology.

  10. A phase mixing model for the frequency-doubling illusion.

    Science.gov (United States)

    Wielaard, James; Smith, R Theodore

    2013-10-01

    We introduce a temporal phase mixing model for a description of the frequency-doubling illusion (FDI). The model is generic in the sense that it can be set to refer to retinal ganglion cells, lateral geniculate cells, as well as simple cells in the primary visual cortex (V1). Model parameters, however, strongly suggest that the FDI originates in the cortex. The model shows how noise in the response phases of cells in V1, or in further processing of these phases, easily produces observed behavior of FDI onset as a function of spatiotemporal frequencies. It also shows how this noise can accommodate physiologically plausible spatial delays in comparing neural signals over a distance. The model offers an explanation for the disappearance of the FDI at sufficiently high spatial frequencies via increasingly correlated coding of neighboring grating stripes. Further, when the FDI is equated to vanishing perceptual discrimination between asynchronous contrast-reversal gratings, the model proposes the possibility that the FDI shows a resonance behavior at sufficiently high spatial frequencies, by which it is alternately perceived and not perceived in sequential temporal frequency bands.

  11. Using Flow Electrodes in Multiple Reactors in Series for Continuous Energy Generation from Capacitive Mixing

    KAUST Repository

    Hatzell, Marta C.

    2014-12-09

    Efficient conversion of “mixing energy” to electricity through capacitive mixing (CapMix) has been limited by low energy recoveries, low power densities, and noncontinuous energy production resulting from intermittent charging and discharging cycles. We show here that a CapMix system based on a four-reactor process with flow electrodes can generate constant and continuous energy, providing a more flexible platform for harvesting mixing energy. The power densities were dependent on the flow-electrode carbon loading, with 5.8 ± 0.2 mW m–2 continuously produced in the charging reactor and 3.3 ± 0.4 mW m–2 produced in the discharging reactor (9.2 ± 0.6 mW m–2 for the whole system) when the flow-electrode carbon loading was 15%. Additionally, when the flow-electrode electrolyte ion concentration increased from 10 to 20 g L–1, the total power density of the whole system (charging and discharging) increased to 50.9 ± 2.5 mW m–2.

  12. Cabibbo--Kobayashi--Maskawa Mixing in Superstring Derived Standard--like Models

    CERN Document Server

    Faraggi, A E; Faraggi, Alon E.; Halyo, Edi

    1994-01-01

    We examine the problem of three generation quark flavor mixing in realistic, superstring derived standard--like models, constructed in the free fermionic formulation. We study the sources of family mixing in these models and discuss the necessary conditions to obtain a realistic Cabibbo--Kobayashi--Maskawa (CKM) mixing matrix. In a specific model, we estimate the mixing angles and discuss the weak CP violating phase. We argue that the superstring standard--like models can produce a realistic CKM mixing matrix. We discuss the possible textures of quark mass matrices that may be obtained in these models.

  13. Linear models for sound from supersonic reacting mixing layers

    Science.gov (United States)

    Chary, P. Shivakanth; Samanta, Arnab

    2016-12-01

    We perform a linearized reduced-order modeling of the aeroacoustic sound sources in supersonic reacting mixing layers to explore their sensitivities to some of the flow parameters in radiating sound. Specifically, we investigate the role of outer modes as the effective flow compressibility is raised, when some of these are expected to dominate over the traditional Kelvin-Helmholtz (K-H) -type central mode. Although the outer modes are known to be of lesser importance in the near-field mixing, how these radiate to the far-field is uncertain, on which we focus. On keeping the flow compressibility fixed, the outer modes are realized via biasing the respective mean densities of the fast (oxidizer) or slow (fuel) side. Here the mean flows are laminar solutions of two-dimensional compressible boundary layers with an imposed composite (turbulent) spreading rate, which we show to significantly alter the growth of instability waves by saturating them earlier, similar to in nonlinear calculations, achieved here via solving the linear parabolized stability equations. As the flow parameters are varied, instability of the slow modes is shown to be more sensitive to heat release, potentially exceeding equivalent central modes, as these modes yield relatively compact sound sources with lesser spreading of the mixing layer, when compared to the corresponding fast modes. In contrast, the radiated sound seems to be relatively unaffected when the mixture equivalence ratio is varied, except for a lean mixture which is shown to yield a pronounced effect on the slow mode radiation by reducing its modal growth.

  14. Modelling Mixed Discrete-Continuous Domains for Planning

    CERN Document Server

    Fox, M; 10.1613/jair.2044

    2011-01-01

    In this paper we present pddl+, a planning domain description language for modelling mixed discrete-continuous planning domains. We describe the syntax and modelling style of pddl+, showing that the language makes convenient the modelling of complex time-dependent effects. We provide a formal semantics for pddl+ by mapping planning instances into constructs of hybrid automata. Using the syntax of HAs as our semantic model we construct a semantic mapping to labelled transition systems to complete the formal interpretation of pddl+ planning instances. An advantage of building a mapping from pddl+ to HA theory is that it forms a bridge between the Planning and Real Time Systems research communities. One consequence is that we can expect to make use of some of the theoretical properties of HAs. For example, for a restricted class of HAs the Reachability problem (which is equivalent to Plan Existence) is decidable. pddl+ provides an alternative to the continuous durative action model of pddl2.1, adding a more flex...

  15. Affine LIBOR Models with Multiple Curves

    DEFF Research Database (Denmark)

    Grbac, Zorana; Papapantoleon, Antonis; Schoenmakers, John

    2015-01-01

    We introduce a multiple curve framework that combines tractable dynamics and semianalytic pricing formulas with positive interest rates and basis spreads. Negative rates and positive spreads can also be accommodated in this framework. The dynamics of overnight indexed swap and LIBOR rates...... with dependent LIBOR rates is developed that allows for an efficient and accurate calibration to a system of caplet prices....

  16. Marginal and mixed-effects models in the analysis of human papillomavirus natural history data.

    Science.gov (United States)

    Xue, Xiaonan; Gange, Stephen J; Zhong, Ye; Burk, Robert D; Minkoff, Howard; Massad, L Stewart; Watts, D Heather; Kuniholm, Mark H; Anastos, Kathryn; Levine, Alexandra M; Fazzari, Melissa; D'Souza, Gypsyamber; Plankey, Michael; Palefsky, Joel M; Strickler, Howard D

    2010-01-01

    Human papillomavirus (HPV) natural history has several characteristics that, at least from a statistical perspective, are not often encountered elsewhere in infectious disease and cancer research. There are, for example, multiple HPV types, and infection by each HPV type may be considered separate events. Although concurrent infections are common, the prevalence, incidence, and duration/persistence of each individual HPV can be separately measured. However, repeated measures involving the same subject tend to be correlated. The probability of detecting any given HPV type, for example, is greater among individuals who are currently positive for at least one other HPV type. Serial testing for HPV over time represents a second form of repeated measures. Statistical inferences that fail to take these correlations into account would be invalid. However, methods that do not use all the data would be inefficient. Marginal and mixed-effects models can address these issues but are not frequently used in HPV research. The current study provides an overview of these methods and then uses HPV data from a cohort of HIV-positive women to illustrate how they may be applied, and compare their results. The findings show the greater efficiency of these models compared with standard logistic regression and Cox models. Because mixed-effects models estimate subject-specific associations, they sometimes gave much higher effect estimates than marginal models, which estimate population-averaged associations. Overall, the results show that marginal and mixed-effects models are efficient for studying HPV natural history, but also highlight the importance of understanding how these models differ.

  17. Modeling of mixed-mode chromatography of peptides.

    Science.gov (United States)

    Bernardi, Susanna; Gétaz, David; Forrer, Nicola; Morbidelli, Massimo

    2013-03-29

    Mixed-mode chromatographic materials are more and more often used for the purification of biomolecules, such as peptides and proteins. In many instances they in fact exhibit better selectivity values and therefore improve the purification efficiency compared to classical materials. In this work, a model to describe biomolecules retention in cation-exchange/reversed-phase (CIEX-RP) mixed-mode columns under diluted conditions has been developed. The model accounts for the effect of the salt and organic modifier concentration on the biomolecule Henry coefficient through three parameters: α, β and γ. The α parameter is related to the adsorption strength and ligand density, β represents the number of organic modifier molecules necessary to displace one adsorbed biomolecule and γ represents the number of salt molecules necessary to desorb one biomolecule. The latter parameter is strictly related to the number of charges on the biomolecule surface interacting with the ion-exchange ligands and it is shown experimentally that its value is close to the biomolecule net charge. The model reliability has been validated by a large set of experimental data including retention times of two different peptides (goserelin and insulin) on five columns: a reversed-phase C8 column and four CIEX-RP columns with different percentages of sulfonic groups and various concentration values of the salt and organic modifier. It has been found that the percentage of sulfonic groups on the surface strongly affects the peptides adsorption strength, and in particular, in the cases investigated, a CIEX ligand density around 0.04μmol/m(2) leads to optimal retention values.

  18. Efficient material flow in mixed model assembly lines.

    Science.gov (United States)

    Alnahhal, Mohammed; Noche, Bernd

    2013-01-01

    In this study, material flow from decentralized supermarkets to stations in mixed model assembly lines using tow (tugger) trains is investigated. Train routing, scheduling, and loading problems are investigated in parallel to minimize the number of trains, variability in loading and in routes lengths, and line-side inventory holding costs. The general framework for solving these problems in parallel contains analytical equations, Dynamic Programming (DP), and Mixed Integer Programming (MIP). Matlab in conjunction with LP-solve software was used to formulate the problem. An example was presented to explain the idea. Results which were obtained in very short CPU time showed the effect of using time buffer among routes on the feasible space and on the optimal solution. Results also showed the effect of the objective, concerning reducing the variability in loading, on the results of routing, scheduling, and loading. Moreover, results showed the importance of considering the maximum line-side inventory beside the capacity of the train in the same time in finding the optimal solution.

  19. Mixed Frequency Data Sampling Regression Models: The R Package midasr

    Directory of Open Access Journals (Sweden)

    Eric Ghysels

    2016-08-01

    Full Text Available When modeling economic relationships it is increasingly common to encounter data sampled at different frequencies. We introduce the R package midasr which enables estimating regression models with variables sampled at different frequencies within a MIDAS regression framework put forward in work by Ghysels, Santa-Clara, and Valkanov (2002. In this article we define a general autoregressive MIDAS regression model with multiple variables of different frequencies and show how it can be specified using the familiar R formula interface and estimated using various optimization methods chosen by the researcher. We discuss how to check the validity of the estimated model both in terms of numerical convergence and statistical adequacy of a chosen regression specification, how to perform model selection based on a information criterion, how to assess forecasting accuracy of the MIDAS regression model and how to obtain a forecast aggregation of different MIDAS regression models. We illustrate the capabilities of the package with a simulated MIDAS regression model and give two empirical examples of application of MIDAS regression.

  20. Mixed effects modeling of proliferation rates in cell-based models: consequence for pharmacogenomics and cancer.

    Directory of Open Access Journals (Sweden)

    Hae Kyung Im

    2012-02-01

    Full Text Available The International HapMap project has made publicly available extensive genotypic data on a number of lymphoblastoid cell lines (LCLs. Building on this resource, many research groups have generated a large amount of phenotypic data on these cell lines to facilitate genetic studies of disease risk or drug response. However, one problem that may reduce the usefulness of these resources is the biological noise inherent to cellular phenotypes. We developed a novel method, termed Mixed Effects Model Averaging (MEM, which pools data from multiple sources and generates an intrinsic cellular growth rate phenotype. This intrinsic growth rate was estimated for each of over 500 HapMap cell lines. We then examined the association of this intrinsic growth rate with gene expression levels and found that almost 30% (2,967 out of 10,748 of the genes tested were significant with FDR less than 10%. We probed further to demonstrate evidence of a genetic effect on intrinsic growth rate by determining a significant enrichment in growth-associated genes among genes targeted by top growth-associated SNPs (as eQTLs. The estimated intrinsic growth rate as well as the strength of the association with genetic variants and gene expression traits are made publicly available through a cell-based pharmacogenomics database, PACdb. This resource should enable researchers to explore the mediating effects of proliferation rate on other phenotypes.

  1. A Unified Mutual Coupling Model for Multiple Antenna Systems

    Institute of Scientific and Technical Information of China (English)

    WU Yu-jiang; NIE Zai-ping

    2006-01-01

    A unified mutual coupling model for multiple antenna communication systems based on moment methods is proposed. This model combines antenna coupling and RF front-end circuit coupling, thus providing a more accurate and complete analysis of the mutual coupling effect on multiple antenna systems.

  2. WOMBAT: a tool for mixed model analyses in quantitative genetics by restricted maximum likelihood (REML).

    Science.gov (United States)

    Meyer, Karin

    2007-11-01

    WOMBAT is a software package for quantitative genetic analyses of continuous traits, fitting a linear, mixed model; estimates of covariance components and the resulting genetic parameters are obtained by restricted maximum likelihood. A wide range of models, comprising numerous traits, multiple fixed and random effects, selected genetic covariance structures, random regression models and reduced rank estimation are accommodated. WOMBAT employs up-to-date numerical and computational methods. Together with the use of efficient compilers, this generates fast executable programs, suitable for large scale analyses. Use of WOMBAT is illustrated for a bivariate analysis. The package consists of the executable program, available for LINUX and WINDOWS environments, manual and a set of worked example, and can be downloaded free of charge from (http://agbu. une.edu.au/~kmeyer/wombat.html).

  3. COMPUTATIONAL FLUID DYNAMICS MODELING OF SCALED HANFORD DOUBLE SHELL TANK MIXING - CFD MODELING SENSITIVITY STUDY RESULTS

    Energy Technology Data Exchange (ETDEWEB)

    JACKSON VL

    2011-08-31

    The primary purpose of the tank mixing and sampling demonstration program is to mitigate the technical risks associated with the ability of the Hanford tank farm delivery and celtification systems to measure and deliver a uniformly mixed high-level waste (HLW) feed to the Waste Treatment and Immobilization Plant (WTP) Uniform feed to the WTP is a requirement of 24590-WTP-ICD-MG-01-019, ICD-19 - Interface Control Document for Waste Feed, although the exact definition of uniform is evolving in this context. Computational Fluid Dynamics (CFD) modeling has been used to assist in evaluating scaleup issues, study operational parameters, and predict mixing performance at full-scale.

  4. Computational Modeling and Experimental Facts of Mixed Self- Assembly Systems.

    Science.gov (United States)

    Messina, Paula V; Besada-Porto, Jose Miguel; Rial, Ramón; González-Díaz, Humberto; Ruso, Juan M

    2016-01-01

    The formation of liposomes, nanoparticle micelles, and related systems by mixtures of drugs and/or surfactants is of major relevance for the design of drug delivery systems. We can design new systems using different compounds. Traditionally these systems are created by trial and error using experimental data. However, in most cases measuring all the possible combinations represents a extensive work and almost always unaffordable. In this sense, we can use theoretical concepts and develop computational models to predict different physicochemical properties of self-aggregation processes of mixed molecular systems. In a previous work, we developed a new PT-LFER model (Linear Free Energy Relationships, LFER, combined with Perturbation Theory, PT, ideas) for binary systems. The best PT-LFER model found predicted the effects of 25000 perturbations over nine different properties of binary systems. The present work has two parts. Firstly, we carry out an analysis on the new results on the applications and experimental-theoretical studies of binary selfassembled systems. In the second part, we report for the first time, a new experimental-theoretic study of the NaDC-DTAB binary system. For this purpose, we have combined experimental procedures plus physicochemical thermodynamic framework with the PT-LFER model reported in our previous work.

  5. Bayesian Gaussian Copula Factor Models for Mixed Data.

    Science.gov (United States)

    Murray, Jared S; Dunson, David B; Carin, Lawrence; Lucas, Joseph E

    2013-06-01

    Gaussian factor models have proven widely useful for parsimoniously characterizing dependence in multivariate data. There is a rich literature on their extension to mixed categorical and continuous variables, using latent Gaussian variables or through generalized latent trait models acommodating measurements in the exponential family. However, when generalizing to non-Gaussian measured variables the latent variables typically influence both the dependence structure and the form of the marginal distributions, complicating interpretation and introducing artifacts. To address this problem we propose a novel class of Bayesian Gaussian copula factor models which decouple the latent factors from the marginal distributions. A semiparametric specification for the marginals based on the extended rank likelihood yields straightforward implementation and substantial computational gains. We provide new theoretical and empirical justifications for using this likelihood in Bayesian inference. We propose new default priors for the factor loadings and develop efficient parameter-expanded Gibbs sampling for posterior computation. The methods are evaluated through simulations and applied to a dataset in political science. The models in this paper are implemented in the R package bfa.

  6. State-shared model for multiple-input multiple-output systems

    Institute of Scientific and Technical Information of China (English)

    Zhenhua TIAN; Karlene A. HOO

    2005-01-01

    This work proposes a method to construct a state-shared model for multiple-input multiple-output (MIMO)systems. A state-shared model is defined as a linear time invariant state-space structure that is driven by measurement signals-the plant outputs and the manipulated variables, but shared by different multiple input/output models. The genesis of the state-shared model is based on a particular reduced non-minimal realization. Any such realization necessarily fulfills the requirement that the output of the state-shared model is an asymptotically correct estimate of the output of the plant, if the process model is selected appropriately. The approach is demonstrated on a nonlinear MIMO system- a physiological model of calcium fluxes that controls muscle contraction and relaxation in human cardiac myocytes.

  7. Evaluation of Aerosol Mixing State Classes in the GISS Modele-matrix Climate Model Using Single-particle Mass Spectrometry Measurements

    Science.gov (United States)

    Bauer, Susanne E.; Ault, Andrew; Prather, Kimberly A.

    2013-01-01

    Aerosol particles in the atmosphere are composed of multiple chemical species. The aerosol mixing state, which describes how chemical species are mixed at the single-particle level, provides critical information on microphysical characteristics that determine the interaction of aerosols with the climate system. The evaluation of mixing state has become the next challenge. This study uses aerosol time-of-flight mass spectrometry (ATOFMS) data and compares the results to those of the Goddard Institute for Space Studies modelE-MATRIX (Multiconfiguration Aerosol TRacker of mIXing state) model, a global climate model that includes a detailed aerosol microphysical scheme. We use data from field campaigns that examine a variety of air mass regimens (urban, rural, and maritime). At all locations, polluted areas in California (Riverside, La Jolla, and Long Beach), a remote location in the Sierra Nevada Mountains (Sugar Pine) and observations from Jeju (South Korea), the majority of aerosol species are internally mixed. Coarse aerosol particles, those above 1 micron, are typically aged, such as coated dust or reacted sea-salt particles. Particles below 1 micron contain large fractions of organic material, internally-mixed with sulfate and black carbon, and few external mixtures. We conclude that observations taken over multiple weeks characterize typical air mass types at a given location well; however, due to the instrumentation, we could not evaluate mass budgets. These results represent the first detailed comparison of single-particle mixing states in a global climate model with real-time single-particle mass spectrometry data, an important step in improving the representation of mixing state in global climate models.

  8. Modeling of mixing in stirred bioreactors 4. mixing time for aerated bacteria, yeasts and fungus broths

    Directory of Open Access Journals (Sweden)

    Cascaval Dan

    2004-01-01

    Full Text Available The mixing time for bioreactors depends mainly on the rheoiogicai properties of the broths, the biomass concentration and morphology, mixing system characteristics and fermentation conditions. For quantifying the influence of these factors on the mixing efficiency for stirred bioreactors, aerated broths of bacteria (P. shermanii, yeasts (S. cerevisiae and fungi (P. chrysogenum, free mycelia and mycelial aggregates of different concentrations have been investigated using a laboratory bioreactor with a double turbine impeller. The experimental data indicated that the influence of the rotation speed, aeration rate and stirrer positions on the mixing intensity strongly differ from one system to another and must be correlated with the microorganism characteristics, namely: the biomass concentration and morphology. Moreover, compared with non-aerated broths, variations of the mixing time with the considered parameters are very different, due to the complex flow mechanism of gas-liquid dispersions. By means of the experimental data and using a multiregression analysis method some mathematical correlations for the mixing time of the general form: tm = a1*Cx2+a2*Cx+a3*IgVa+a4-N2+a5-N+a6/a7*L2+a8*L+a9 were established. The proposed equations offer good agreement with the experiments, the average deviation being ±6.7% - ±9.4 and are adequate for the flow regime Re < 25,000.

  9. Latent Fundamentals Arbitrage with a Mixed Effects Factor Model

    Directory of Open Access Journals (Sweden)

    Andrei Salem Gonçalves

    2012-09-01

    Full Text Available We propose a single-factor mixed effects panel data model to create an arbitrage portfolio that identifies differences in firm-level latent fundamentals. Furthermore, we show that even though the characteristics that affect returns are unknown variables, it is possible to identify the strength of the combination of these latent fundamentals for each stock by following a simple approach using historical data. As a result, a trading strategy that bought the stocks with the best fundamentals (strong fundamentals portfolio and sold the stocks with the worst ones (weak fundamentals portfolio realized significant risk-adjusted returns in the U.S. market for the period between July 1986 and June 2008. To ensure robustness, we performed sub period and seasonal analyses and adjusted for trading costs and we found further empirical evidence that using a simple investment rule, that identified these latent fundamentals from the structure of past returns, can lead to profit.

  10. Vertimill™ pilot scale tests simulated by perfect mixing model

    Directory of Open Access Journals (Sweden)

    Douglas Batista Mazzinghy

    2014-07-01

    Full Text Available Minas-Rio Project, Anglo American property, located in Brazil, considers Vertimill™ to make the particle size distribution adequate to feed slurry pipeline. A pilot test campaign was carried out at Metso's pilot plant facility located in York city, Pennsylvania State, USA, to provide information to scale up the industrial grinding circuit. The perfect mixing model, normally used to simulate ball mills, was used to compare the direct and reverse circuit configurations. The simulations were based on the appearance function determined from the laboratory tests using a batch tube mill. The combined breakage rate/discharge rate function (r/d was determined from Vertimill™ feed and product particle size distributions obtained from pilot tests. The residence time was estimated considering the mill hold-up and solids flow rate. The simulation results show that there are no significant differences between direct and reverse circuits for the sample tested.

  11. A mixed integer linear programming model applied in barge planning for Omya

    Directory of Open Access Journals (Sweden)

    David Bredström

    2015-12-01

    Full Text Available This article presents a mathematical model for barge transport planning on the river Rhine, which is part of a decision support system (DSS recently taken into use by the Swiss company Omya. The system is operated by Omya’s regional office in Cologne, Germany, responsible for distribution planning at the regional distribution center (RDC in Moerdijk, the Netherlands. The distribution planning is a vital part of supply chain management of Omya’s production of Norwegian high quality calcium carbonate slurry, supplied to European paper manufacturers. The DSS operates within a vendor managed inventory (VMI setting, where the customer inventories are monitored by Omya, who decides upon the refilling days and quantities delivered by barges. The barge planning problem falls into the category of inventory routing problems (IRP and is further characterized with multiple products, heterogeneous fleet with availability restrictions (the fleet is owned by third party, vehicle compartments, dependency of barge capacity on water-level, multiple customer visits, bounded customer inventories and rolling planning horizon. There are additional modelling details which had to be considered to make it possible to employ the model in practice at a sufficient level of detail. To the best of our knowledge, we have not been able to find similar models covering all these aspects in barge planning. This article presents the developed mixed-integer programming model and discusses practical experience with its solution. Briefly, it also puts the model into the context of the entire business case of value chain optimization in Omya.

  12. Building a Bridge from Moments to PDF's: A New Approach to Finding PDF Mixing Models

    CERN Document Server

    Schüler, Lennart; Knabner, Peter; Attinger, Sabine

    2016-01-01

    Probability density function (PDF) methods are a promising alternative to predicting the transport of solutes in groundwater under uncertainty. They make it possible to derive the evolution equations of the mean concentration and the concentration variance, used in moment methods. A mixing model, also known as a dissipation model, is essential for both methods. Finding a satisfactory mixing model is still an open question and due to the rather elaborate PDF methods, a difficult undertaking. Both the PDF equation and the concentration variance equation depend on the same mixing model. This connection is used to find and test an improved mixing model for the much easier to handle concentration variance. Subsequently, this mixing model is transferred to the PDF equation and tested. The newly proposed mixing model yields significantly improved results for both variance modelling and PDF modelling.

  13. Modeling Multiple Risks: Hidden Domain of Attraction

    CERN Document Server

    Mitra, Abhimanyu

    2011-01-01

    Hidden regular variation is a sub-model of multivariate regular variation and facilitates accurate estimation of joint tail probabilities. We generalize the model of hidden regular variation to what we call hidden domain of attraction. We exhibit examples that illustrate the need for a more general model and discuss detection and estimation techniques.

  14. Multiple Solutions of Mixed Convective MHD Casson Fluid Flow in a Channel

    Directory of Open Access Journals (Sweden)

    Jawad Raza

    2016-01-01

    Full Text Available A numerical investigation is made to determine the occurrence of the multiple solutions of MHD Casson fluid in a porous channel. Governing partial differential equation of the proposed problem converted into nonlinear ordinary differential equations by using similarity transformation. Numerical technique known as shooting method is used to investigate the existence of the multiple solutions for the variations of different parameters. Effects of physical parameters on velocity profile, temperature, concentration, and skin friction are presented in pictorial and tabulation representation.

  15. Multiple-membership multiple-classification models for social network and group dependences

    OpenAIRE

    Tranmer, Mark; Steel, David; Browne, William J

    2014-01-01

    The social network literature on network dependences has largely ignored other sources of dependence, such as the school that a student attends, or the area in which an individual lives. The multilevel modelling literature on school and area dependences has, in turn, largely ignored social networks. To bridge this divide, a multiple-membership multiple-classification modelling approach for jointly investigating social network and group dependences is presented. This allows social network and ...

  16. Modeling of RFID-Enabled Real-Time Manufacturing Execution System in Mixed-Model Assembly Lines

    Directory of Open Access Journals (Sweden)

    Zhixin Yang

    2015-01-01

    Full Text Available To quickly respond to the diverse product demands, mixed-model assembly lines are well adopted in discrete manufacturing industries. Besides the complexity in material distribution, mixed-model assembly involves a variety of components, different process plans and fast production changes, which greatly increase the difficulty for agile production management. Aiming at breaking through the bottlenecks in existing production management, a novel RFID-enabled manufacturing execution system (MES, which is featured with real-time and wireless information interaction capability, is proposed to identify various manufacturing objects including WIPs, tools, and operators, etc., and to trace their movements throughout the production processes. However, being subject to the constraints in terms of safety stock, machine assignment, setup, and scheduling requirements, the optimization of RFID-enabled MES model for production planning and scheduling issues is a NP-hard problem. A new heuristical generalized Lagrangian decomposition approach has been proposed for model optimization, which decomposes the model into three subproblems: computation of optimal configuration of RFID senor networks, optimization of production planning subjected to machine setup cost and safety stock constraints, and optimization of scheduling for minimized overtime. RFID signal processing methods that could solve unreliable, redundant, and missing tag events are also described in detail. The model validity is discussed through algorithm analysis and verified through numerical simulation. The proposed design scheme has important reference value for the applications of RFID in multiple manufacturing fields, and also lays a vital research foundation to leverage digital and networked manufacturing system towards intelligence.

  17. Extending the linear model with R generalized linear, mixed effects and nonparametric regression models

    CERN Document Server

    Faraway, Julian J

    2005-01-01

    Linear models are central to the practice of statistics and form the foundation of a vast range of statistical methodologies. Julian J. Faraway''s critically acclaimed Linear Models with R examined regression and analysis of variance, demonstrated the different methods available, and showed in which situations each one applies. Following in those footsteps, Extending the Linear Model with R surveys the techniques that grow from the regression model, presenting three extensions to that framework: generalized linear models (GLMs), mixed effect models, and nonparametric regression models. The author''s treatment is thoroughly modern and covers topics that include GLM diagnostics, generalized linear mixed models, trees, and even the use of neural networks in statistics. To demonstrate the interplay of theory and practice, throughout the book the author weaves the use of the R software environment to analyze the data of real examples, providing all of the R commands necessary to reproduce the analyses. All of the ...

  18. Differential expression analysis for RNAseq using Poisson mixed models.

    Science.gov (United States)

    Sun, Shiquan; Hood, Michelle; Scott, Laura; Peng, Qinke; Mukherjee, Sayan; Tung, Jenny; Zhou, Xiang

    2017-06-20

    Identifying differentially expressed (DE) genes from RNA sequencing (RNAseq) studies is among the most common analyses in genomics. However, RNAseq DE analysis presents several statistical and computational challenges, including over-dispersed read counts and, in some settings, sample non-independence. Previous count-based methods rely on simple hierarchical Poisson models (e.g. negative binomial) to model independent over-dispersion, but do not account for sample non-independence due to relatedness, population structure and/or hidden confounders. Here, we present a Poisson mixed model with two random effects terms that account for both independent over-dispersion and sample non-independence. We also develop a scalable sampling-based inference algorithm using a latent variable representation of the Poisson distribution. With simulations, we show that our method properly controls for type I error and is generally more powerful than other widely used approaches, except in small samples (n <15) with other unfavorable properties (e.g. small effect sizes). We also apply our method to three real datasets that contain related individuals, population stratification or hidden confounders. Our results show that our method increases power in all three data compared to other approaches, though the power gain is smallest in the smallest sample (n = 6). Our method is implemented in MACAU, freely available at www.xzlab.org/software.html. © The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research.

  19. Simulation of longitudinal exposure data with variance-covariance structures based on mixed models.

    Science.gov (United States)

    Song, Peng; Xue, Jianping; Li, Zhilin

    2013-03-01

    Longitudinal data are important in exposure and risk assessments, especially for pollutants with long half-lives in the human body and where chronic exposures to current levels in the environment raise concerns for human health effects. It is usually difficult and expensive to obtain large longitudinal data sets for human exposure studies. This article reports a new simulation method to generate longitudinal data with flexible numbers of subjects and days. Mixed models are used to describe the variance-covariance structures of input longitudinal data. Based on estimated model parameters, simulation data are generated with similar statistical characteristics compared to the input data. Three criteria are used to determine similarity: the overall mean and standard deviation, the variance components percentages, and the average autocorrelation coefficients. Upon the discussion of mixed models, a simulation procedure is produced and numerical results are shown through one human exposure study. Simulations of three sets of exposure data successfully meet above criteria. In particular, simulations can always retain correct weights of inter- and intrasubject variances as in the input data. Autocorrelations are also well followed. Compared with other simulation algorithms, this new method stores more information about the input overall distribution so as to satisfy the above multiple criteria for statistical targets. In addition, it generates values from numerous data sources and simulates continuous observed variables better than current data methods. This new method also provides flexible options in both modeling and simulation procedures according to various user requirements.

  20. A time dependent mixing model to close PDF equations for transport in heterogeneous aquifers

    Science.gov (United States)

    Schüler, L.; Suciu, N.; Knabner, P.; Attinger, S.

    2016-10-01

    Probability density function (PDF) methods are a promising alternative to predicting the transport of solutes in groundwater under uncertainty. They make it possible to derive the evolution equations of the mean concentration and the concentration variance, used in moment methods. The mixing model, describing the transport of the PDF in concentration space, is essential for both methods. Finding a satisfactory mixing model is still an open question and due to the rather elaborate PDF methods, a difficult undertaking. Both the PDF equation and the concentration variance equation depend on the same mixing model. This connection is used to find and test an improved mixing model for the much easier to handle concentration variance. Subsequently, this mixing model is transferred to the PDF equation and tested. The newly proposed mixing model yields significantly improved results for both variance modelling and PDF modelling.

  1. The transition model test for serial dependence in mixed-effects models for binary data

    DEFF Research Database (Denmark)

    Breinegaard, Nina; Rabe-Hesketh, Sophia; Skrondal, Anders

    2016-01-01

    Generalized linear mixed models for longitudinal data assume that responses at different occasions are conditionally independent, given the random effects and covariates. Although this assumption is pivotal for consistent estimation, violation due to serial dependence is hard to assess by model...... the targeted root mean squared error of approximation (TRSMEA) as a measure of the population misfit due to serial dependence....

  2. Cruise observation and numerical modeling of turbulent mixing in the Pearl River estuary in summer

    Science.gov (United States)

    Pan, Jiayi; Gu, Yanzhen

    2016-06-01

    The turbulent mixing in the Pearl River estuary and plume area is analyzed by using cruise data and simulation results of the Regional Ocean Model System (ROMS). The cruise observations reveal that strong mixing appeared in the bottom layer on larger ebb in the estuary. Modeling simulations are consistent with the observation results, and suggest that inside the estuary and in the near-shore water, the mixing is stronger on ebb than on flood. The mixing generation mechanism analysis based on modeling data reveals that bottom stress is responsible for the generation of turbulence in the estuary, for the re-circulating plume area, internal shear instability plays an important role in the mixing, and wind may induce the surface mixing in the plume far-field. The estuary mixing is controlled by the tidal strength, and in the re-circulating plume bulge, the wind stirring may reinforce the internal shear instability mixing.

  3. A ternary age-mixing model to explain contaminant occurrence in a deep supply well.

    Science.gov (United States)

    Jurgens, Bryant C; Bexfield, Laura M; Eberts, Sandra M

    2014-09-01

    The age distribution of water from a public-supply well in a deep alluvial aquifer was estimated and used to help explain arsenic variability in the water. The age distribution was computed using a ternary mixing model that combines three lumped parameter models of advection-dispersion transport of environmental tracers, which represent relatively recent recharge (post-1950s) containing volatile organic compounds (VOCs), old intermediate depth groundwater (about 6500 years) that was free of drinking-water contaminants, and very old, deep groundwater (more than 21,000 years) containing arsenic above the USEPA maximum contaminant level of 10 µg/L. The ternary mixing model was calibrated to tritium, chloroflorocarbon-113, and carbon-14 (14C) concentrations that were measured in water samples collected on multiple occasions. Variability in atmospheric 14C over the past 50,000 years was accounted for in the interpretation of (14) C as a tracer. Calibrated ternary models indicate the fraction of deep, very old groundwater entering the well varies substantially throughout the year and was highest following long periods of nonoperation or infrequent operation, which occured during the winter season when water demand was low. The fraction of young water entering the well was about 11% during the summer when pumping peaked to meet water demand and about 3% to 6% during the winter months. This paper demonstrates how collection of multiple tracers can be used in combination with simplified models of fluid flow to estimate the age distribution and thus fraction of contaminated groundwater reaching a supply well under different pumping conditions.

  4. A Dirty Model for Multiple Sparse Regression

    CERN Document Server

    Jalali, Ali; Sanghavi, Sujay

    2011-01-01

    Sparse linear regression -- finding an unknown vector from linear measurements -- is now known to be possible with fewer samples than variables, via methods like the LASSO. We consider the multiple sparse linear regression problem, where several related vectors -- with partially shared support sets -- have to be recovered. A natural question in this setting is whether one can use the sharing to further decrease the overall number of samples required. A line of recent research has studied the use of \\ell_1/\\ell_q norm block-regularizations with q>1 for such problems; however these could actually perform worse in sample complexity -- vis a vis solving each problem separately ignoring sharing -- depending on the level of sharing. We present a new method for multiple sparse linear regression that can leverage support and parameter overlap when it exists, but not pay a penalty when it does not. A very simple idea: we decompose the parameters into two components and regularize these differently. We show both theore...

  5. Mixed axion/neutralino cold dark matter in supersymmetric models

    Energy Technology Data Exchange (ETDEWEB)

    Baer, Howard; Lessa, Andre; Rajagopalan, Shibi; Sreethawong, Warintorn, E-mail: baer@nhn.ou.edu, E-mail: lessa@nhn.ou.edu, E-mail: shibi@nhn.ou.edu, E-mail: wstan@nhn.ou.edu [Dept. of Physics and Astronomy, University of Oklahoma, Norman, OK 73019 (United States)

    2011-06-01

    We consider supersymmetric (SUSY) models wherein the strong CP problem is solved by the Peccei-Quinn (PQ) mechanism with a concommitant axion/axino supermultiplet. We examine R-parity conserving models where the neutralino is the lightest SUSY particle, so that a mixture of neutralinos and axions serve as cold dark matter (a Z-tilde {sub 1} CDM). The mixed a Z-tilde {sub 1} CDM scenario can match the measured dark matter abundance for SUSY models which typically give too low a value of the usual thermal neutralino abundance, such as models with wino-like or higgsino-like dark matter. The usual thermal neutralino abundance can be greatly enhanced by the decay of thermally-produced axinos (ã) to neutralinos, followed by neutralino re-annihilation at temperatures much lower than freeze-out. In this case, the relic density is usually neutralino dominated, and goes as ∼ (f{sub a}/N)/m{sub ã}{sup 3/2}. If axino decay occurs before neutralino freeze-out, then instead the neutralino abundance can be augmented by relic axions to match the measured abundance. Entropy production from late-time axino decays can diminish the axion abundance, but ultimately not the neutralino abundance. In a Z-tilde {sub 1} CDM models, it may be possible to detect both a WIMP and an axion as dark matter relics. We also discuss possible modifications of our results due to production and decay of saxions. In the appendices, we present expressions for the Hubble expansion rate and the axion and neutralino relic densities in radiation, matter and decaying-particle dominated universes.

  6. Analysis of fluid mixing characteristics in reactor vessel downcomer using Theofanous and Wallis` mixing model. (DVI Case)

    Energy Technology Data Exchange (ETDEWEB)

    Cho, Bong Hyun; Kim, Hwan Yeol; Kang, Hyung Seok; Bae, Yoon Young

    1997-05-01

    Direct injection of emergency core cooling water into the reactor vessel downcomer annulus (DVI) is an unique feature of the four-train safety injection system of Korean Next Generation Reactor(KNGR). In this study, in order to evaluate the fluid mixing characteristics of the injected water for DVI case, we have suggested for application to DVI, Theofanous` regional mixing model and Wallis` experiments of flow regimes for injection water to the annulus. Theofanous`model was developed as a fluid mixing model in reactor vessel downcomer for the case of Cold Leg Injection(CLI). We have established a procedure for calculating fluid mixing temperature, calculated the mixing temperature for SBLOCA and MSLB, and compared them to those of CLI. In general, the fluid temperatures across the reactor vessel beltline are higher than 110 deg F, the RT{sub NDT} of EOL for reactor vessel material, and the values are within the acceptable limits of PTS concern. (author). 6 tabs., 21 figs., 11 refs.

  7. MATRIX (Multiconfiguration Aerosol TRacker of mIXing state: an aerosol microphysical module for global atmospheric models

    Directory of Open Access Journals (Sweden)

    S. E. Bauer

    2008-05-01

    Full Text Available A new aerosol microphysical module MATRIX, the Multiconfiguation Aerosol TRacker of mIXing state, and its application in the Goddard Institute for Space Studies (GISS climate model (ModelE is described. This module, which is based on the quadrature method of moments (QMOM, represents nucleation, condensation, coagulation, internal and external mixing, and cloud-drop activation and provides aerosol particle mass and number concentration and particle size information for up to 16 mixed-mode aerosol populations. Internal and external mixing among aerosol components sulfate, nitrate, ammonium, carbonaceous aerosols, dust and sea-salt particles are represented. The solubility of each aerosol mode, which is explicitly calculated based on its soluble and insoluble components, enables calculation of the dependence of cloud drop activation on the microphysical characterization of multiple soluble modes. A detailed model description and results of box-model simulations of various mode configurations are presented. The number concentration of aerosol particles activated to cloud drops depends on the mode configuration. Simulations on the global scale with the GISS climate model are evaluated against aircraft and station measurements of aerosol mass and number concentration and particle size. The model accurately captures the observed size distributions in the aitken and accumulation modes up to particle diameter 1 μm, in which sulfate, nitrate, black and organic carbon are predominantly located; however the model underestimates coarse-mode number concentration and size, especially in the marine environment.

  8. Characterization of Pairwise Correlations from Multiple Quantum Correlated Beams Generated from Cascaded Four-Wave Mixing Processes.

    Science.gov (United States)

    Wang, Hailong; Cao, Leiming; Jing, Jietai

    2017-01-10

    We theoretically characterize the performance of the pairwise correlations (PCs) from multiple quantum correlated beams based on the cascaded four-wave mixing (FWM) processes. The presence of the PCs with quantum corre- lation in these systems can be verified by calculating the degree of intensity difference squeezing for any pair of all the output fields. The quantum correlation characteristics of all the PCs under different cascaded schemes are also discussed in detail and the repulsion effect between PCs in these cascaded FWM processes is theoretically predicted. Our results open the way for the classification and application of quantum states generated from the cascaded FWM processes.

  9. Predictability of Shanghai Stock Market by Agent-based Mix-game Model

    CERN Document Server

    Gou, C

    2005-01-01

    This paper reports the effort of using agent-based mix-game model to predict financial time series. It introduces the prediction methodology by means of mix-game model and gives an example of its application to forecasting Shanghai Index. The results show that this prediction methodology is effective and agent-based mix-game model is a potential good model to predict time series of financial markets.

  10. Feedback model evaluation of high-mix product manufacturing

    Science.gov (United States)

    King, Dion; Cheng, Mingjen; Lu, Aho; Mao, Zhibiao; Liang, Curtis

    2006-03-01

    As the patterns are getting smaller, the difficulty to control a margin-tight process expands exponentially. The use of the Automated Process Control (APC), therefore, becomes a widely employed mean in photolithography process to control overlay and CD variations. The accuracy of APC is dependent upon the amount of the previous process data. However, in a foundry with high-mix products it is typical that there are not enough historic data points for accurate calculation of process parameters for a low volume product. The consequence is the high rework rate of pilot runs and test runes due to poor process parameter prediction for overlay. Several studies of the method for predicting the overlay correction have been reported. The key to build a good prediction model is to break the overlay errors down to several parts. Some are equipment or technology related errors, which are shared by all products. Others are the characteristic for certain products, for instance, mask error or special alignment marks. In the production environment the former parts are updated in real time by data feedback from processing all kinds of products. The low volume products or pilot products can share the information. Thus we can achieve a more accurate control or prediction for a new product. In this paper we provide a new model for predicting the process parameter settings of overlay for a pilot run or a product not being run on a tool for a long period of time. This new model is a Simplified Cerebellar Manipulation Arithmetic Controller (SCMAC), which is one kind of Neural Network (NN) model. We assume each part of overlay errors is a cell in SCMAC and build the whole cell table by using this assumption. The final overlay correction value is the sum of a group of cells, which is activated by one lot information. We will also present the details of the building and training of this new SCMAC model. The prediction accuracy of SCMAC in overlay parameters is also evaluated. According to

  11. Extended Mixed-Efects Item Response Models with the MH-RM Algorithm

    Science.gov (United States)

    Chalmers, R. Philip

    2015-01-01

    A mixed-effects item response theory (IRT) model is presented as a logical extension of the generalized linear mixed-effects modeling approach to formulating explanatory IRT models. Fixed and random coefficients in the extended model are estimated using a Metropolis-Hastings Robbins-Monro (MH-RM) stochastic imputation algorithm to accommodate for…

  12. The use of mixed models in a modified Iowa Gambling Task and a prisoner's dilemma game

    Directory of Open Access Journals (Sweden)

    Jean Stockard

    2007-02-01

    Full Text Available Researchers in the decision making tradition usually analyze multiple decisions within experiments by aggregating choices across individuals and using the individual subject as the unit of analysis. This approach can mask important variations and patterns within the data. Specifically, it ignores variations in decisions across a task or game and possible influences of characteristics of the subject or the experiment on these variations. We demonstrate, by reanalyzing data from two previously published articles, how a mixed model analysis addresses these limitations. Our results, with a modified Iowa gambling task and a prisoner's dilemma game, illustrate the ways in which such an analysis can test hypotheses not possible with other techniques, is more parsimonious, and is more likely to be faithful to theoretical models.

  13. Models of mixed irradiation with a 'reciprocal-time' pattern of the repair function

    Energy Technology Data Exchange (ETDEWEB)

    Suzuki, Shozo; Miura, Yuri; Mizuno, Shoichi [Tokyo Metropolitan Inst. of Gerontology (Japan); Furusawa, Yoshiya [National Inst. of Radiological Sciences, Chiba (Japan)

    2002-09-01

    Suzuki presented models for mixed irradiation with two and multiple types of radiation by extending the Zaider and Rossi model, which is based on the theory of dual radiation action. In these models, the repair function was simply assumed to be semi-logarithmically linear (i.e., monoexponential), or a first-order process, which has been experimentally contradicted. Fowler, however, suggested that the repair of radiation damage might be largely a second-order process rather than a first-order one, and presented data in support of this hypothesis. In addition, a second-order repair function is preferred to an n-exponential repair function for the reason that only one parameter is used in the former instead of 2n-1 parameters for the latter, although both repair functions show a good fit to the experimental data. However, according to a second-order repair function, the repair rate depends on the dose, which is incompatible with the experimental data. We, therefore, revised the models for mixed irradiation by Zaider and Rossi and by Suzuki, by substituting a 'reciprocal-time' pattern of the repair function, which is derived from the assumption that the repair rate is independent of the dose in a second-order repair function, for a first-order one in reduction and interaction factors of the models, although the underlying mechanism for this assumption cannot be well-explained. The reduction factor, which reduces the contribution of the square of a dose to cell killing in the linear-quadratic model and its derivatives, and the interaction factor, which also reduces the contribution of the interaction of two or more doses of different types of radiation, were formulated by using a 'reciprocal-time' patterns of the repair function. Cell survivals calculated from the older and the newly modified models were compared in terms of the dose-rate by assuming various types of single and mixed irradiation. The result implies that the newly modified models for

  14. SDG and qualitative trend based model multiple scale validation

    Science.gov (United States)

    Gao, Dong; Xu, Xin; Yin, Jianjin; Zhang, Hongyu; Zhang, Beike

    2017-09-01

    Verification, Validation and Accreditation (VV&A) is key technology of simulation and modelling. For the traditional model validation methods, the completeness is weak; it is carried out in one scale; it depends on human experience. The SDG (Signed Directed Graph) and qualitative trend based multiple scale validation is proposed. First the SDG model is built and qualitative trends are added to the model. And then complete testing scenarios are produced by positive inference. The multiple scale validation is carried out by comparing the testing scenarios with outputs of simulation model in different scales. Finally, the effectiveness is proved by carrying out validation for a reactor model.

  15. Structural model analysis of multiple quantitative traits.

    Directory of Open Access Journals (Sweden)

    Renhua Li

    2006-07-01

    Full Text Available We introduce a method for the analysis of multilocus, multitrait genetic data that provides an intuitive and precise characterization of genetic architecture. We show that it is possible to infer the magnitude and direction of causal relationships among multiple correlated phenotypes and illustrate the technique using body composition and bone density data from mouse intercross populations. Using these techniques we are able to distinguish genetic loci that affect adiposity from those that affect overall body size and thus reveal a shortcoming of standardized measures such as body mass index that are widely used in obesity research. The identification of causal networks sheds light on the nature of genetic heterogeneity and pleiotropy in complex genetic systems.

  16. Mixed Dark Matter in Left-Right Symmetric Models

    CERN Document Server

    Berlin, Asher; Hooper, Dan; Mohlabeng, Gopolang

    2016-01-01

    Motivated by the recently reported diboson and dijet excesses in Run 1 data at ATLAS and CMS, we explore models of mixed dark matter in left-right symmetric theories. In this study, we calculate the relic abundance and the elastic scattering cross section with nuclei for a number of dark matter candidates that appear within the fermionic multiplets of left-right symmetric models. In contrast to the case of pure multiplets, WIMP-nucleon scattering proceeds at tree-level, and hence the projected reach of future direct detection experiments such as LUX-ZEPLIN and XENON1T will cover large regions of parameter space for TeV-scale thermal dark matter. Decays of the heavy charged W' boson to particles in the dark sector can potentially shift the right-handed gauge coupling to larger values when fixed to the rate of the Run 1 excesses, moving towards the theoretically attractive scenario, gR = gL. This region of parameter space may be probed by future collider searches for new Higgs bosons or electroweak fermions.

  17. Mixed dark matter in left-right symmetric models

    Energy Technology Data Exchange (ETDEWEB)

    Berlin, Asher [Department of Physics, University of Chicago,Chicago, Illinois 60637 (United States); Fox, Patrick J. [Theoretical Physics Department, Fermilab,Batavia, Illinois 60510 (United States); Hooper, Dan [Center for Particle Astrophysics, Fermi National Accelerator Laboratory,Batavia, Illinois 60510 (United States); Department of Astronomy and Astrophysics, University of Chicago,Chicago, Illinois 60637 (United States); Mohlabeng, Gopolang [Center for Particle Astrophysics, Fermi National Accelerator Laboratory,Batavia, Illinois 60510 (United States); Department of Physics and Astronomy, University of Kansas,Lawrence, Kansas 66045 (United States)

    2016-06-08

    Motivated by the recently reported diboson and dijet excesses in Run 1 data at ATLAS and CMS, we explore models of mixed dark matter in left-right symmetric theories. In this study, we calculate the relic abundance and the elastic scattering cross section with nuclei for a number of dark matter candidates that appear within the fermionic multiplets of left-right symmetric models. In contrast to the case of pure multiplets, WIMP-nucleon scattering proceeds at tree-level, and hence the projected reach of future direct detection experiments such as LUX-ZEPLIN and XENON1T will cover large regions of parameter space for TeV-scale thermal dark matter. Decays of the heavy charged W{sup ′} boson to particles in the dark sector can potentially shift the right-handed gauge coupling to larger values when fixed to the rate of the Run 1 excesses, moving towards the theoretically attractive scenario, g{sub R}=g{sub L}. This region of parameter space may be probed by future collider searches for new Higgs bosons or electroweak fermions.

  18. Car Delay Model near Bus Stops with Mixed Traffic Flow

    Directory of Open Access Journals (Sweden)

    Yang Xiaobao

    2013-01-01

    Full Text Available This paper proposes a model for estimating car delays at bus stops under mixed traffic using probability theory and queuing theory. The roadway is divided to serve motorized and nonmotorized traffic streams. Bus stops are located on the nonmotorized lanes. When buses dwell at the stop, they block the bicycles. Thus, two conflict points between car stream and other traffic stream are identified. The first conflict point occurs as bicycles merge to the motorized lane to avoid waiting behind the stopping buses. The second occurs as buses merge back to the motorized lane. The average car delay is estimated as the sum of the average delay at these two conflict points and the delay resulting from following the slower bicycles that merged into the motorized lane. Data are collected to calibrate and validate the developed model from one site in Beijing. The sensitivity of car delay to various operation conditions is examined. The results show that both bus stream and bicycle stream have significant effects on car delay. At bus volumes above 200 vehicles per hour, the curbside stop design is not appropriate because of the long car delays. It can be replaced by the bus bay design.

  19. Multiple View Stereo by Reflectance Modeling

    DEFF Research Database (Denmark)

    Kim, Sujung; Kim, Seong Dae; Dahl, Anders Lindbjerg

    2012-01-01

    we argue that a visual metric based on a surface reflectance model should be founded on more observations than the degrees of freedom (dof) of the reflectance model. If (partly) specular surfaces are to be handled, this implies a model with at least two dof. In this paper, we propose to construct...... visual metrics of more than one dof using the DAISY methodology, which compares favorably to the state of the art in the experiments carried out. These experiments are based on a novel data set of eight scenes with diffuse and specular surfaces and accompanying ground truth. The performance of six...

  20. A single predator multiple prey model with prey mutation

    Science.gov (United States)

    Mullan, Rory; Abernethy, Gavin M.; Glass, David H.; McCartney, Mark

    2016-11-01

    A multiple species predator-prey model is expanded with the introduction of a coupled map lattice for the prey, allowing the prey to mutate discretely into other prey species. The model is examined in its single predator, multiple mutating prey form. Two unimodal maps are used for the underlying dynamics of the prey species, with different predation strategies being used. Conclusions are drawn on how varying the control parameters of the model governs the overall behaviour and survival of the species. It is observed that in such a complex system, with multiple mutating prey, a large range of non-linear dynamics is possible.

  1. Statistical selection of multiple-input multiple-output nonlinear dynamic models of spike train transformation.

    Science.gov (United States)

    Song, Dong; Chan, Rosa H M; Marmarelis, Vasilis Z; Hampson, Robert E; Deadwyler, Sam A; Berger, Theodore W

    2007-01-01

    Multiple-input multiple-output nonlinear dynamic model of spike train to spike train transformations was previously formulated for hippocampal-cortical prostheses. This paper further described the statistical methods of selecting significant inputs (self-terms) and interactions between inputs (cross-terms) of this Volterra kernel-based model. In our approach, model structure was determined by progressively adding self-terms and cross-terms using a forward stepwise model selection technique. Model coefficients were then pruned based on Wald test. Results showed that the reduced kernel models, which contained much fewer coefficients than the full Volterra kernel model, gave good fits to the novel data. These models could be used to analyze the functional interactions between neurons during behavior.

  2. Infinite multiple membership relational modeling for complex networks

    DEFF Research Database (Denmark)

    Mørup, Morten; Schmidt, Mikkel Nørgaard; Hansen, Lars Kai

    2011-01-01

    Learning latent structure in complex networks has become an important problem fueled by many types of networked data originating from practically all fields of science. In this paper, we propose a new non-parametric Bayesian multiple-membership latent feature model for networks. Contrary to exist......Learning latent structure in complex networks has become an important problem fueled by many types of networked data originating from practically all fields of science. In this paper, we propose a new non-parametric Bayesian multiple-membership latent feature model for networks. Contrary...... to existing multiplemembership models that scale quadratically in the number of vertices the proposed model scales linearly in the number of links admitting multiple-membership analysis in large scale networks. We demonstrate a connection between the single membership relational model and multiple membership...

  3. Breast Radiotherapy with Mixed Energy Photons; a Model for Optimal Beam Weighting.

    Science.gov (United States)

    Birgani, Mohammadjavad Tahmasebi; Fatahiasl, Jafar; Hosseini, Seyed Mohammad; Bagheri, Ali; Behrooz, Mohammad Ali; Zabiehzadeh, Mansour; Meskani, Reza; Gomari, Maryam Talaei

    2015-01-01

    Utilization of high energy photons (>10 MV) with an optimal weight using a mixed energy technique is a practical way to generate a homogenous dose distribution while maintaining adequate target coverage in intact breast radiotherapy. This study represents a model for estimation of this optimal weight for day to day clinical usage. For this purpose, treatment planning computed tomography scans of thirty-three consecutive early stage breast cancer patients following breast conservation surgery were analyzed. After delineation of the breast clinical target volume (CTV) and placing opposed wedge paired isocenteric tangential portals, dosimeteric calculations were conducted and dose volume histograms (DVHs) were generated, first with pure 6 MV photons and then these calculations were repeated ten times with incorporating 18 MV photons (ten percent increase in weight per step) in each individual patient. For each calculation two indexes including maximum dose in the breast CTV (Dmax) and the volume of CTV which covered with 95% Isodose line (VCTV, 95%IDL) were measured according to the DVH data and then normalized values were plotted in a graph. The optimal weight of 18 MV photons was defined as the intersection point of Dmax and VCTV, 95%IDL graphs. For creating a model to predict this optimal weight multiple linear regression analysis was used based on some of the breast and tangential field parameters. The best fitting model for prediction of 18 MV photons optimal weight in breast radiotherapy using mixed energy technique, incorporated chest wall separation plus central lung distance (Adjusted R2=0.776). In conclusion, this study represents a model for the estimation of optimal beam weighting in breast radiotherapy using mixed photon energy technique for routine day to day clinical usage.

  4. Modeling 210Pb-derived mixing activity in ocean margin sediments: Diffusive versus nonlocal mixing

    NARCIS (Netherlands)

    Soetaert, K.E.R.; Herman, P.M.J.; Middelburg, J.J.; Heip, C.H.R.; De Stigter, H.; Van Weering, T.C.E.; Epping, E.; Helder, W.

    1996-01-01

    The influence of sediment mixing on activity versus depth profiles of the radionuclide (210)pb in the upper 20 cm of the sediments has been investigated along a depth transect (208 m- 4500 m, 17 stations) in the OMEX study area (Goban Spur, NE Atlantic Ocean). A hierarchical family of bioturbation/n

  5. Prediction of stock markets by the evolutionary mix-game model

    Science.gov (United States)

    Chen, Fang; Gou, Chengling; Guo, Xiaoqian; Gao, Jieping

    2008-06-01

    This paper presents the efforts of using the evolutionary mix-game model, which is a modified form of the agent-based mix-game model, to predict financial time series. Here, we have carried out three methods to improve the original mix-game model by adding the abilities of strategy evolution to agents, and then applying the new model referred to as the evolutionary mix-game model to forecast the Shanghai Stock Exchange Composite Index. The results show that these modifications can improve the accuracy of prediction greatly when proper parameters are chosen.

  6. Oxygen reduction kinetics on mixed conducting SOFC model cathodes

    Energy Technology Data Exchange (ETDEWEB)

    Baumann, F.S.

    2006-07-01

    The kinetics of the oxygen reduction reaction at the surface of mixed conducting solid oxide fuel cell (SOFC) cathodes is one of the main limiting factors to the performance of these promising systems. For ''realistic'' porous electrodes, however, it is usually very difficult to separate the influence of different resistive processes. Therefore, a suitable, geometrically well-defined model system was used in this work to enable an unambiguous distinction of individual electrochemical processes by means of impedance spectroscopy. The electrochemical measurements were performed on dense thin film microelectrodes, prepared by PLD and photolithography, of mixed conducting perovskite-type materials. The first part of the thesis consists of an extensive impedance spectroscopic investigation of La0.6Sr0.4Co0.8Fe0.2O3 (LSCF) microelectrodes. An equivalent circuit was identified that describes the electrochemical properties of the model electrodes appropriately and enables an unambiguous interpretation of the measured impedance spectra. Hence, the dependencies of individual electrochemical processes such as the surface exchange reaction on a wide range of experimental parameters including temperature, dc bias and oxygen partial pressure could be studied. As a result, a comprehensive set of experimental data has been obtained, which was previously not available for a mixed conducting model system. In the course of the experiments on the dc bias dependence of the electrochemical processes a new and surprising effect was discovered: It could be shown that a short but strong dc polarisation of a LSCF microelectrode at high temperature improves its electrochemical performance with respect to the oxygen reduction reaction drastically. The electrochemical resistance associated with the oxygen surface exchange reaction, initially the dominant contribution to the total electrode resistance, can be reduced by two orders of magnitude. This &apos

  7. Quantifying inter- and intra-population niche variability using hierarchical bayesian stable isotope mixing models.

    Science.gov (United States)

    Semmens, Brice X; Ward, Eric J; Moore, Jonathan W; Darimont, Chris T

    2009-07-09

    Variability in resource use defines the width of a trophic niche occupied by a population. Intra-population variability in resource use may occur across hierarchical levels of population structure from individuals to subpopulations. Understanding how levels of population organization contribute to population niche width is critical to ecology and evolution. Here we describe a hierarchical stable isotope mixing model that can simultaneously estimate both the prey composition of a consumer diet and the diet variability among individuals and across levels of population organization. By explicitly estimating variance components for multiple scales, the model can deconstruct the niche width of a consumer population into relevant levels of population structure. We apply this new approach to stable isotope data from a population of gray wolves from coastal British Columbia, and show support for extensive intra-population niche variability among individuals, social groups, and geographically isolated subpopulations. The analytic method we describe improves mixing models by accounting for diet variability, and improves isotope niche width analysis by quantitatively assessing the contribution of levels of organization to the niche width of a population.

  8. Multivariate t nonlinear mixed-effects models for multi-outcome longitudinal data with missing values.

    Science.gov (United States)

    Wang, Wan-Lun; Lin, Tsung-I

    2014-07-30

    The multivariate nonlinear mixed-effects model (MNLMM) has emerged as an effective tool for modeling multi-outcome longitudinal data following nonlinear growth patterns. In the framework of MNLMM, the random effects and within-subject errors are assumed to be normally distributed for mathematical tractability and computational simplicity. However, a serious departure from normality may cause lack of robustness and subsequently make invalid inference. This paper presents a robust extension of the MNLMM by considering a joint multivariate t distribution for the random effects and within-subject errors, called the multivariate t nonlinear mixed-effects model. Moreover, a damped exponential correlation structure is employed to capture the extra serial correlation among irregularly observed multiple repeated measures. An efficient expectation conditional maximization algorithm coupled with the first-order Taylor approximation is developed for maximizing the complete pseudo-data likelihood function. The techniques for the estimation of random effects, imputation of missing responses and identification of potential outliers are also investigated. The methodology is motivated by a real data example on 161 pregnant women coming from a study in a private fertilization obstetrics clinic in Santiago, Chile and used to analyze these data.

  9. ID Model Construction and Validation: A Multiple Intelligences Case

    Science.gov (United States)

    Tracey, Monica W.; Richey, Rita C.

    2007-01-01

    This is a report of a developmental research study that aimed to construct and validate an instructional design (ID) model that incorporates the theory and practice of multiple intelligences (MI). The study consisted of three phases. In phase one, the theoretical foundations of multiple Intelligences and ID were examined to guide the development…

  10. Multiple Social Networks, Data Models and Measures for

    DEFF Research Database (Denmark)

    Magnani, Matteo; Rossi, Luca

    2017-01-01

    Multiple Social Network Analysis is a discipline defining models, measures, methodologies, and algorithms to study multiple social networks together as a single social system. It is particularly valuable when the networks are interconnected, e.g., the same actors are present in more than one...... network....

  11. Metabolic modelling of polyhydroxyalkanoate copolymers production by mixed microbial cultures

    Directory of Open Access Journals (Sweden)

    Reis Maria AM

    2008-07-01

    Full Text Available Abstract Background This paper presents a metabolic model describing the production of polyhydroxyalkanoate (PHA copolymers in mixed microbial cultures, using mixtures of acetic and propionic acid as carbon source material. Material and energetic balances were established on the basis of previously elucidated metabolic pathways. Equations were derived for the theoretical yields for cell growth and PHA production on mixtures of acetic and propionic acid as functions of the oxidative phosphorylation efficiency, P/O ratio. The oxidative phosphorylation efficiency was estimated from rate measurements, which in turn allowed the estimation of the theoretical yield coefficients. Results The model was validated with experimental data collected in a sequencing batch reactor (SBR operated under varying feeding conditions: feeding of acetic and propionic acid separately (control experiments, and the feeding of acetic and propionic acid simultaneously. Two different feast and famine culture enrichment strategies were studied: (i either with acetate or (ii with propionate as carbon source material. Metabolic flux analysis (MFA was performed for the different feeding conditions and culture enrichment strategies. Flux balance analysis (FBA was used to calculate optimal feeding scenarios for high quality PHA polymers production, where it was found that a suitable polymer would be obtained when acetate is fed in excess and the feeding rate of propionate is limited to ~0.17 C-mol/(C-mol.h. The results were compared with published pure culture metabolic studies. Conclusion Acetate was more conducive toward the enrichment of a microbial culture with higher PHA storage fluxes and yields as compared to propionate. The P/O ratio was not only influenced by the selected microbial culture, but also by the carbon substrate fed to each culture, where higher P/O ratio values were consistently observed for acetate than propionate. MFA studies suggest that when mixtures of

  12. Modelling of rate effects at multiple scales

    DEFF Research Database (Denmark)

    Pedersen, R.R.; Simone, A.; Sluys, L. J.

    2008-01-01

    At the macro- and meso-scales a rate dependent constitutive model is used in which visco-elasticity is coupled to visco-plasticity and damage. A viscous length scale effect is introduced to control the size of the fracture process zone. By comparison of the widths of the fracture process zone......, the length scale in the meso-model and the macro-model can be coupled. In this fashion, a bridging of length scales can be established. A computational analysis of  a Split Hopkinson bar test at medium and high impact load is carried out at macro-scale and meso-scale including information from  the micro-scale....

  13. FBR for catalytic propylene polymerization: Controlled mixing and reactor modeling

    NARCIS (Netherlands)

    Meier, G.B.; Weickert, G.; Swaaij, van W.P.M.

    2002-01-01

    Particle mixing and segregation have been studied in a small-scale fluidized-bed reactor (FBR) under pressure. The solids mixing is relatively faster than the residence time of catalyst particles in the case of a polymerization process, but smaller particles accumulate in the upper zone. Semibatch p

  14. Control design approaches for nonlinear systems using multiple models

    Institute of Scientific and Technical Information of China (English)

    Junyong ZHAI; Shumin FEI; Feipeng DA

    2007-01-01

    It is difficult to realize control for some complex nonlinear systems operated in different operating regions.Based on developing local models for different operating regions of the process, a novel algorithm using multiple models is proposed. It utilizes dynamic model bank to establish multiple local models, and their membership functions are defined according to respective regions. Then the nonlinear system is approximated to a weighted combination of the local models.The stability of the nonlinear system is proven. Finally, simulations are given to demonstrate the validity of the proposed method.

  15. Animal model of human disease. Multiple myeloma

    NARCIS (Netherlands)

    Radl, J.; Croese, J.W.; Zurcher, C.; Enden-Vieveen, M.H.M. van den; Leeuw, A.M. de

    1988-01-01

    Animal models of spontaneous and induced plasmacytomas in some inbred strains of mice have proven to be useful tools for different studies on tumorigenesis and immunoregulation. Their wide applicability and the fact that after their intravenous transplantation, the recipient mice developed bone

  16. Genomic Heritability of Bovine Growth Using a Mixed Model

    Directory of Open Access Journals (Sweden)

    Jihye Ryu

    2014-11-01

    Full Text Available This study investigated heritability for bovine growth estimated with genomewide single nucleotide polymorphism (SNP information obtained from a DNA microarray chip. Three hundred sixty seven Korean cattle were genotyped with the Illumina BovineSNP50 BeadChip, and 39,112 SNPs of 364 animals filtered by quality assurance were analyzed to estimate heritability of body weights at 6, 9, 12, 15, 18, 21, and 24 months of age. Restricted maximum likelihood estimate of heritability was obtained using covariance structure of genomic relationships among animals in a mixed model framework. Heritability estimates ranged from 0.58 to 0.76 for body weights at different ages. The heritability estimates using genomic information in this study were larger than those which had been estimated previously using pedigree information. The results revealed a trend that the heritability for body weight increased at a younger age (6 months. This suggests an early genetic evaluation for bovine growth using genomic information to increase genetic merits of animals.

  17. A MIXED LUBRICATION MODEL MODIFIED BY SURFACES' FRACTAL CHARACTERISTICS

    Institute of Scientific and Technical Information of China (English)

    孟凡明; 张有云

    2003-01-01

    Fractal characteristics are introduced into solving lubrication problems. Based on the analysis of the relationship between roughness and engineering surfaces' fractal characteristics and by introducing fractal parameters into the mixed lubrication equation, the relationship between flow factors and fractal dimensions is analyzed. The results show that the pressure flow factors' values increase, while the shear flow factor decreases, with the increasing length to width ratio of a representative asperity γ at the same fractal dimension. It can be also found that these factors experience more irregular and significant variations and show the higher resolution and the local optimal and the worst fractal dimensions, by a fractal dimension D, compared with the oil film thickness to roughness ratio h/Rq. As an example of application of the model to solve the lubrication of the piston skirt in an engine, the frictional force and the load capacity of the oil film in a cylinder were analyzed. The results reveal that the oil film frictional force and the load capacity fluctuate with increasing fractal dimension, showing big values at the small D and smaller ones and slightly variable in the range of bigger one, at the same crank angle.

  18. Study of Self-Organization Model of Multiple Mobile Robot

    OpenAIRE

    Li Shu-qin; Ceng Xian-yi; Xia De-shen

    2006-01-01

    A good organization model of multiple mobile robot should be able to improve the efficiency of the system, reduce the complication of robot interactions, and detract the difficulty of computation. From the sociology aspect of topology, structure and organization, this paper studies the multiple mobile robot organization formation and running mechanism in the dynamic, complicated and unknown environment. It presents and describes in detail a Hierarchical- Web Recursive Organization Model (HWRO...

  19. Airport choice model in multiple airport regions

    Directory of Open Access Journals (Sweden)

    Claudia Muñoz

    2017-02-01

    Full Text Available Purpose: This study aims to analyze travel choices made by air transportation users in multi airport regions because it is a crucial component when planning passenger redistribution policies. The purpose of this study is to find a utility function which makes it possible to know the variables that influence users’ choice of the airports on routes to the main cities in the Colombian territory. Design/methodology/approach: This research generates a Multinomial Logit Model (MNL, which is based on the theory of maximizing utility, and it is based on the data obtained on revealed and stated preference surveys applied to users who reside in the metropolitan area of Aburrá Valley (Colombia. This zone is the only one in the Colombian territory which has two neighboring airports for domestic flights. The airports included in the modeling process were Enrique Olaya Herrera (EOH Airport and José María Córdova (JMC Airport. Several structure models were tested, and the MNL proved to be the most significant revealing the common variables that affect passenger airport choice include the airfare, the price to travel the airport, and the time to get to the airport. Findings and Originality/value: The airport choice model which was calibrated corresponds to a valid powerful tool used to calculate the probability of each analyzed airport of being chosen for domestic flights in the Colombian territory. This is done bearing in mind specific characteristic of each of the attributes contained in the utility function. In addition, these probabilities will be used to calculate future market shares of the two airports considered in this study, and this will be done generating a support tool for airport and airline marketing policies.

  20. Teaching students to apply multiple physical modeling methods

    NARCIS (Netherlands)

    Wiegers, T.; Verlinden, J.C.; Vergeest, J.S.M.

    2014-01-01

    Design students should be able to explore a variety of shapes before elaborating one particular shape. Current modelling courses don’t address this issue. We developed the course Rapid Modelling, which teaches students to explore multiple shape models in a short time, applying different methods and

  1. A model for multiple scattering in GEANT4

    CERN Document Server

    Urbán, László

    2006-01-01

    We present a model to simulate the multiple scattering of charged particles in matter. The model is based on Lewis theory; it does not use the Moliere formalism. It simulates the scattering of a charged particle after a given step, computes the path length correction and the lateral displacement as well. This model is used in GEANT4.

  2. MULTIPLE IMPUTATION OF MISSING DATA IN SUSTAINABLE DEVELOPMENT MODELLING

    OpenAIRE

    Roberto Benedetti; Rita Lima; Alessandro Pandimiglio

    2006-01-01

    A multiple imputation technique is proposed to measure sustainable development using models of structural equations (LISREL) for the treatment of missing data. The reliability of such technique is verified comparing the estimation model with missing data to the estimation model with imputed data. The results show that the missing data problem significantly affect the estimation.

  3. Teaching students to apply multiple physical modeling methods

    NARCIS (Netherlands)

    Wiegers, T.; Verlinden, J.C.; Vergeest, J.S.M.

    2014-01-01

    Design students should be able to explore a variety of shapes before elaborating one particular shape. Current modelling courses don’t address this issue. We developed the course Rapid Modelling, which teaches students to explore multiple shape models in a short time, applying different methods and

  4. Generating synthetic wave climates for coastal modelling: a linear mixed modelling approach

    Science.gov (United States)

    Thomas, C.; Lark, R. M.

    2013-12-01

    Numerical coastline morphological evolution models require wave climate properties to drive morphological change through time. Wave climate properties (typically wave height, period and direction) may be temporally fixed, culled from real wave buoy data, or allowed to vary in some way defined by a Gaussian or other pdf. However, to examine sensitivity of coastline morphologies to wave climate change, it seems desirable to be able to modify wave climate time series from a current to some new state along a trajectory, but in a way consistent with, or initially conditioned by, the properties of existing data, or to generate fully synthetic data sets with realistic time series properties. For example, mean or significant wave height time series may have underlying periodicities, as revealed in numerous analyses of wave data. Our motivation is to develop a simple methodology to generate synthetic wave climate time series that can change in some stochastic way through time. We wish to use such time series in a coastline evolution model to test sensitivities of coastal landforms to changes in wave climate over decadal and centennial scales. We have worked initially on time series of significant wave height, based on data from a Waverider III buoy located off the coast of Yorkshire, England. The statistical framework for the simulation is the linear mixed model. The target variable, perhaps after transformation (Box-Cox), is modelled as a multivariate Gaussian, the mean modelled as a function of a fixed effect, and two random components, one of which is independently and identically distributed (iid) and the second of which is temporally correlated. The model was fitted to the data by likelihood methods. We considered the option of a periodic mean, the period either fixed (e.g. at 12 months) or estimated from the data. We considered two possible correlation structures for the second random effect. In one the correlation decays exponentially with time. In the second

  5. PREDICTION OF THE MIXING ENTHALPIES OF BINARY LIQUID ALLOYS BY MOLECULAR INTERACTION VOLUME MODEL

    Institute of Scientific and Technical Information of China (English)

    H.W.Yang; D.P.Tao; Z.H.Zhou

    2008-01-01

    The mixing enthalpies of 23 binary liquid alloys are calculated by molecular interaction volume model (MIVM), which is a two-parameter model with the partial molar infinite dilute mixing enthalpies. The predicted values are in agreement with the experimental data and then indicate that the model is reliable and convenient.

  6. Estimating marginal properties of quantitative real-time PCR data using nonlinear mixed models

    DEFF Research Database (Denmark)

    Gerhard, Daniel; Bremer, Melanie; Ritz, Christian

    2014-01-01

    A unified modeling framework based on a set of nonlinear mixed models is proposed for flexible modeling of gene expression in real-time PCR experiments. Focus is on estimating the marginal or population-based derived parameters: cycle thresholds and ΔΔc(t), but retaining the conditional mixed mod...

  7. Mixed-Mode Oscillations in a piecewise linear system with multiple time scale coupling

    Science.gov (United States)

    Fernández-García, S.; Krupa, M.; Clément, F.

    2016-10-01

    In this work, we analyze a four dimensional slow-fast piecewise linear system with three time scales presenting Mixed-Mode Oscillations. The system possesses an attractive limit cycle along which oscillations of three different amplitudes and frequencies can appear, namely, small oscillations, pulses (medium amplitude) and one surge (largest amplitude). In addition to proving the existence and attractiveness of the limit cycle, we focus our attention on the canard phenomena underlying the changes in the number of small oscillations and pulses. We analyze locally the existence of secondary canards leading to the addition or subtraction of one small oscillation and describe how this change is globally compensated for or not with the addition or subtraction of one pulse.

  8. Enhancement of four-wave mixing via interference of multiple plasmonic conversion paths

    Science.gov (United States)

    Singh, Shailendra K.; Abak, M. Kurtulus; Tasgin, Mehmet Emre

    2016-01-01

    Recent experiments demonstrate that plasmonic resonators can enhance the four-wave mixing (FWM) process by several orders of magnitude, due to the localization of the incident fields. We show that, when the plasmonic resonator is coupled to two quantum emitters, a three orders of magnitude enhancement can be obtained on top of the enhancement due to the localization. We explicitly demonstrate—on an expression for the steady-state FWM amplitude—how the presence of a Fano resonance leads to the cancellation of nonresonant terms in a FWM process. A cancellation in the denominator gives rise to an enhancement in the nonlinearity. The explicit demonstration we present here guides one to a method for achieving even larger enhancement factors by introducing additional coupling terms. The method is also applicable to Fano resonances induced by all-plasmonic couplings, which are easier to control in experiments.

  9. Green communication: The enabler to multiple business models

    DEFF Research Database (Denmark)

    Lindgren, Peter; Clemmensen, Suberia; Taran, Yariv

    2010-01-01

    Companies stand at the forefront of a new business model reality with new potentials - that will change their basic understanding and practice of running their business models radically. One of the drivers to this change is green communication, its strong relation to green business models and its...... possibility to enable lower energy consumption. This paper shows how green communication enables innovation of green business models and multiple business models running simultaneously in different markets to different customers....

  10. Mixed isoparametric finite element models of laminated composite shells

    Science.gov (United States)

    Noor, A. K.; Andersen, C. M.

    1977-01-01

    Mixed shear-flexible isoparametric elements are presented for the stress and free vibration analysis of laminated composite shallow shells. Both triangular and quadrilateral elements are considered. The 'generalized' element stiffness, consistent mass, and consistent load coefficients are obtained by using a modified form of the Hellinger-Reissner mixed variational principle. Group-theoretic techniques are used in conjunction with computerized symbolic integration to obtain analytic expressions for the stiffness, mass and load coefficients. A procedure is outlined for efficiently handling the resulting system of algebraic equations. The accuracy of the mixed isoparametric elements developed is demonstrated by means of numerical examples, and their advantages over commonly used displacement elements are discussed.

  11. The sensitivity of stratocumulus-capped mixed layers to cloud droplet concentration: do LES and mixed-layer models agree?

    Directory of Open Access Journals (Sweden)

    J. Uchida

    2010-05-01

    Full Text Available The sensitivity of a stratocumulus-capped mixed layer to a change in cloud droplet concentration is evaluated with a large-eddy simulation (LES and a mixed layer model (MLM. The strength of the second aerosol indirect effect simulated by the two model types agrees within 50% for cases in which the LES-simulated boundary layer remains well mixed, if the MLM entrainment closure includes the effects of cloud droplet sedimentation.

    To achieve this agreement, parameters in the MLM entrainment closure and the drizzle parameterization must be retuned to match the LES. This is because the LES advection scheme and microphysical parameterization significantly bias the entrainment rate and precipitation profile compared to observational best guesses. Before this modification, the MLM simulates more liquid water path and much more drizzle at a given droplet concentration than the LES and is more sensitive to droplet concentration, even undergoing a drizzle-induced boundary layer collapse at low droplet concentrations. After this modification, both models predict a comparable decrease of cloud liquid water path as droplet concentration increases, cancelling 30–50% of the Twomey effect for our case. The agreement breaks down at the lowest simulated droplet concentrations, for which the boundary layer in the LES is not well mixed.

    Our results highlight issues with both types of model. Potential LES biases due to inadequate resolution, subgrid mixing and parameterized microphysics must be carefully considered when trying to make a quantitative inference of the second indirect effect from an LES of a stratocumulus-topped boundary layer. On the other hand, even slight internal decoupling of the boundary layer invalidates the central assumption of an MLM, substantially limiting the range of conditions that MLM-predicted sensitivities to droplet concentration are meaningful.

  12. The sensitivity of stratocumulus-capped mixed layers to cloud droplet concentration: do LES and mixed-layer models agree?

    Directory of Open Access Journals (Sweden)

    P. N. Blossey

    2009-12-01

    Full Text Available The sensitivity of a stratocumulus-capped mixed layer to a change in cloud droplet concentration is evaluated with a large-eddy simulation (LES and a mixed layer model (MLM, to see if the two model types agree on the strength of the second aerosol indirect effect. Good agreement can be obtained if the MLM entrainment closure explicitly reduces entrainment efficiency proportional to the rate of cloud droplet sedimentation at cloud top for cases in which the LES-simulated boundary layer remains well mixed, with a single peak in the vertical profile of vertical velocity variance.

    To achieve this agreement, the MLM entrainment closure and the drizzle parameterization must be modified from their observationally-based defaults. This is because the LES advection scheme and microphysical parameterization significantly bias the entrainment rate and precipitation profile compared to observational best guesses. Before this modification, the MLM simulates more liquid water path and much more drizzle at a given droplet concentration than the LES and is more sensitive to droplet concentration, even undergoing a drizzle-induced boundary layer collapse at low droplet concentrations. After this modification, both models predict a similar decrease of cloud liquid water path as droplet concentration increases, cancelling 30–50% of the Twomey effect for our case. The agreement breaks down at the lowest simulated droplet concentrations, for which the boundary layer in the LES is not well mixed.

    Our results highlight issues with both types of model. Potential LES biases due to inadequate resolution, subgrid mixing and microphysics must be carefully considered when trying to make a quantitative inference of the second indirect effect from an LES of a stratocumulus-topped boundary layer. On the other hand, even slight internal decoupling of the boundary layer invalidates MLM-predicted sensitivity to droplet concentrations.

  13. Analyzing Association Mapping in Pedigree-Based GWAS Using a Penalized Multitrait Mixed Model.

    Science.gov (United States)

    Liu, Jin; Yang, Can; Shi, Xingjie; Li, Cong; Huang, Jian; Zhao, Hongyu; Ma, Shuangge

    2016-07-01

    Genome-wide association studies (GWAS) have led to the identification of many genetic variants associated with complex diseases in the past 10 years. Penalization methods, with significant numerical and statistical advantages, have been extensively adopted in analyzing GWAS. This study has been partly motivated by the analysis of Genetic Analysis Workshop (GAW) 18 data, which have two notable characteristics. First, the subjects are from a small number of pedigrees and hence related. Second, for each subject, multiple correlated traits have been measured. Most of the existing penalization methods assume independence between subjects and traits and can be suboptimal. There are a few methods in the literature based on mixed modeling that can accommodate correlations. However, they cannot fully accommodate the two types of correlations while conducting effective marker selection. In this study, we develop a penalized multitrait mixed modeling approach. It accommodates the two different types of correlations and includes several existing methods as special cases. Effective penalization is adopted for marker selection. Simulation demonstrates its satisfactory performance. The GAW 18 data are analyzed using the proposed method. © 2016 WILEY PERIODICALS, INC.

  14. A Multiple-Reception Access Protocol with Interruptions with Mixed Priorities in CDMA Networks

    Institute of Scientific and Technical Information of China (English)

    Lu Xiaowen; Zhu Jinkang

    2003-01-01

    A novel access protocol called Multiple-Reception Access Protocol (MRAP) and its modification MRAP/WI are proposed. In this protocol, all colliding users with a common code can be identified by the base station due to the offset of arrival time Thus they can retransmit access requests under the base station's control. Furthermore new arrivals with higher priority level can interrupt the lower retransmission in order to reduce its access delay although it increases the lower priority's delay. Simulation results of MRAP and MRAP/WI are given in order to highlight the superior performance of the proposed approach.

  15. MULTIPLE LIVER ABSCESS BY MIXED BACTERIAL ETIOLOGY: AN UNUSUAL CASE REPORT

    Directory of Open Access Journals (Sweden)

    Mannur

    2012-11-01

    Full Text Available ABSTRACT: Pyogenic liver abscess is a serious disease, which is potentially fatal if left untreated. In developed countries, pyogenic abscesses are the most common but worldwide, amoebae are the most common cause. We report a 60-ye ar-old diabetic woman with a 2 months history of pain abdomen, 1 month history of high fev er and anorexia who had multiple liver abscess caused by anaerobic Actinomyces species and Enterococcus faecalis and was complicated by peritonitis. Treatment included prompt percutaneous drainage coupled with long-term intravenous administration of Amikacin, M etronidazole and Piperacillin/ Tazobactum. The patient later died due to peritoniti s.

  16. Entrepreneurial intention modeling using hierarchical multiple regression

    Directory of Open Access Journals (Sweden)

    Marina Jeger

    2014-12-01

    Full Text Available The goal of this study is to identify the contribution of effectuation dimensions to the predictive power of the entrepreneurial intention model over and above that which can be accounted for by other predictors selected and confirmed in previous studies. As is often the case in social and behavioral studies, some variables are likely to be highly correlated with each other. Therefore, the relative amount of variance in the criterion variable explained by each of the predictors depends on several factors such as the order of variable entry and sample specifics. The results show the modest predictive power of two dimensions of effectuation prior to the introduction of the theory of planned behavior elements. The article highlights the main advantages of applying hierarchical regression in social sciences as well as in the specific context of entrepreneurial intention formation, and addresses some of the potential pitfalls that this type of analysis entails.

  17. Modeling of mixing processes: Fluids, particulates, and powders

    Energy Technology Data Exchange (ETDEWEB)

    Ottino, J.M.; Hansen, S. [Northwestern Univ., Evanston, IL (United States)

    1995-12-31

    Work under this grant involves two main areas: (1) Mixing of Viscous Liquids, this first area comprising aggregation, fragmentation and dispersion, and (2) Mixing of Powders. In order to produce a coherent self-contained picture, we report primarily on results obtained under (1), and within this area, mostly on computational studies of particle aggregation in regular and chaotic flows. Numerical simulations show that the average cluster size of compact clusters grows algebraically, while the average cluster size of fractal clusters grows exponentially; companion mathematical arguments are used to describe the initial growth of average cluster size and polydispersity. It is found that when the system is well mixed and the capture radius independent of mass, the polydispersity is constant for long-times and the cluster size distribution is self-similar. Furthermore, our simulations indicate that the fractal nature of the clusters is dependent upon the mixing.

  18. A framework for meta-analysis of veterinary drug pharmacokinetic data using mixed effect modeling.

    Science.gov (United States)

    Li, Mengjie; Gehring, Ronette; Lin, Zhoumeng; Riviere, Jim

    2015-04-01

    Combining data from available studies is a useful approach to interpret the overwhelming amount of data generated in medical research from multiple studies. Paradoxically, in veterinary medicine, lack of data requires integrating available data to make meaningful population inferences. Nonlinear mixed-effects modeling is a useful tool to apply meta-analysis to diverse pharmacokinetic (PK) studies of veterinary drugs. This review provides a summary of the characteristics of PK data of veterinary drugs and how integration of these data may differ from human PK studies. The limits of meta-analysis include the sophistication of data mining, and generation of misleading results caused by biased or poor quality data. The overriding strength of meta-analysis applied to this field is that robust statistical analysis of the diverse sparse data sets inherent to veterinary medicine applications can be accomplished, thereby allowing population inferences to be made.

  19. Linear mixed-effects models to describe individual tree crown width for China-fir in Fujian Province, southeast China.

    Directory of Open Access Journals (Sweden)

    Xu Hao

    Full Text Available A multiple linear model was developed for individual tree crown width of Cunninghamia lanceolata (Lamb. Hook in Fujian province, southeast China. Data were obtained from 55 sample plots of pure China-fir plantation stands. An Ordinary Linear Least Squares (OLS regression was used to establish the crown width model. To adjust for correlations between observations from the same sample plots, we developed one level linear mixed-effects (LME models based on the multiple linear model, which take into account the random effects of plots. The best random effects combinations for the LME models were determined by the Akaike's information criterion, the Bayesian information criterion and the -2logarithm likelihood. Heteroscedasticity was reduced by three residual variance functions: the power function, the exponential function and the constant plus power function. The spatial correlation was modeled by three correlation structures: the first-order autoregressive structure [AR(1], a combination of first-order autoregressive and moving average structures [ARMA(1,1], and the compound symmetry structure (CS. Then, the LME model was compared to the multiple linear model using the absolute mean residual (AMR, the root mean square error (RMSE, and the adjusted coefficient of determination (adj-R2. For individual tree crown width models, the one level LME model showed the best performance. An independent dataset was used to test the performance of the models and to demonstrate the advantage of calibrating LME models.

  20. Multiple orthogonal polynomials of mixed type: Gauss-Borel factorization and the multi-component 2D Toda hierarchy

    CERN Document Server

    Álvarez-Fernández, Carlos; Mañas, Manuel

    2010-01-01

    Multiple orthogonality is considered in the realm of a Gauss-Borel factorization problem for a semi-infinite moment matrix. Perfect combinations of weights and a finite Borel measure are constructed in terms of M-Nikishin systems. These perfect combinations ensure that the problem of mixed multiple orthogonality has a unique solution, that can be obtained from the solution to a Gauss-Borel factorization problem for a semi-infinite matrix, which plays the role of a moment matrix. This leads to sequences of multiple orthogonal polynomials, their duals and second kind functions. It also gives the corresponding linear forms that are bi-orthogonal to the dual linear forms. Expressions for these objects in terms of determinants from the moment matrix are given, recursion relations are found, which imply a multi-diagonal Jacobi type matrix with double staircase shape, and results like the ABC theorem or the Christoffel-Darboux formula are re-derived in this context (using the factorization problem and the generalize...

  1. Exploring Mixed Membership Stochastic Block Models via Non-negative Matrix Factorization

    KAUST Repository

    Peng, Chengbin

    2014-12-01

    Many real-world phenomena can be modeled by networks in which entities and connections are represented by nodes and edges respectively. When certain nodes are highly connected with each other, those nodes forms a cluster, which is called community in our context. It is usually assumed that each node belongs to one community only, but evidences in biology and social networks reveal that the communities often overlap with each other. In other words, one node can probably belong to multiple communities. In light of that, mixed membership stochastic block models (MMB) have been developed to model those networks with overlapping communities. Such a model contains three matrices: two incidence matrices indicating in and out connections and one probability matrix. When the probability of connections for nodes between communities are significantly small, the parameter inference problem to this model can be solved by a constrained non-negative matrix factorization (NMF) algorithm. In this paper, we explore the connection between the two models and propose an algorithm based on NMF to infer the parameters of MMB. The proposed algorithms can detect overlapping communities regardless of knowing or not the number of communities. Experiments show that our algorithm can achieve a better community detection performance than the traditional NMF algorithm. © 2014 IEEE.

  2. Exploring the Emotional Experience of Same-Sex Parents by Mixing Creatively Multiple Qualitative Methods

    Directory of Open Access Journals (Sweden)

    Alessandro Pratesi PhD, MA

    2012-04-01

    Full Text Available In this paper I address some of the main challenges and benefits of doing qualitative research with a specific type of ‘informal caregivers’, i.e. those who have been thus far excluded from the conceptual category of “normal” caregivers and from normal research on informal care: same-sex parents. The research presented in this paper is an example of a qualitative, inclusive approach to studying the felt and lived experience of 33 same-sex parents. It draws on a wider study on 80 informal caregivers, who were different in terms of gender, type of care, marital status, and sexual orientation. Its aim was to offer a more inclusive interpretation and a more reliable discourse on family care and parenthood. The research objective was to gain insights into the emotional mechanisms through which the dynamics of inclusion or exclusion are interactionally and situationally constructed and/or challenged while doing care. In this paper I illustrate the mix of creative, qualitative methods I employed to explore the experiences of a group of same-sex parents living in Philadelphia (USA.

  3. Experimental and Measurement Uncertainty Associated with Characterizing Slurry Mixing Performance of Pulsating Jets at Multiple Scales

    Energy Technology Data Exchange (ETDEWEB)

    Bamberger, Judith A.; Piepel, Gregory F.; Enderlin, Carl W.; Amidan, Brett G.; Heredia-Langner, Alejandro

    2015-09-10

    Understanding how uncertainty manifests itself in complex experiments is important for developing the testing protocol and interpreting the experimental results. This paper describes experimental and measurement uncertainties, and how they can depend on the order of performing experimental tests. Experiments with pulse-jet mixers in tanks at three scales were conducted to characterize the performance of transient-developing periodic flows in Newtonian slurries. Other test parameters included the simulant, solids concentration, and nozzle exit velocity. Critical suspension velocity and cloud height were the metrics used to characterize Newtonian slurry flow associated with mobilization and mixing. During testing, near-replicate and near-repeat tests were conducted. The experimental results were used to quantify the combined experimental and measurement uncertainties using standard deviations and percent relative standard deviations (%RSD) The uncertainties in critical suspension velocity and cloud height tend to increase with the values of these responses. Hence, the %RSD values are the more appropriate summary measure of near-replicate testing and measurement uncertainty.

  4. Analysis of oligonucleotide array experiments with repeated measures using mixed models

    Directory of Open Access Journals (Sweden)

    Getchell Thomas V

    2004-12-01

    Full Text Available Abstract Background Two or more factor mixed factorial experiments are becoming increasingly common in microarray data analysis. In this case study, the two factors are presence (Patients with Alzheimer's disease or absence (Control of the disease, and brain regions including olfactory bulb (OB or cerebellum (CER. In the design considered in this manuscript, OB and CER are repeated measurements from the same subject and, hence, are correlated. It is critical to identify sources of variability in the analysis of oligonucleotide array experiments with repeated measures and correlations among data points have to be considered. In addition, multiple testing problems are more complicated in experiments with multi-level treatments or treatment combinations. Results In this study we adopted a linear mixed model to analyze oligonucleotide array experiments with repeated measures. We first construct a generalized F test to select differentially expressed genes. The Benjamini and Hochberg (BH procedure of controlling false discovery rate (FDR at 5% was applied to the P values of the generalized F test. For those genes with significant generalized F test, we then categorize them based on whether the interaction terms were significant or not at the α-level (αnew = 0.0033 determined by the FDR procedure. Since simple effects may be examined for the genes with significant interaction effect, we adopt the protected Fisher's least significant difference test (LSD procedure at the level of αnew to control the family-wise error rate (FWER for each gene examined. Conclusions A linear mixed model is appropriate for analysis of oligonucleotide array experiments with repeated measures. We constructed a generalized F test to select differentially expressed genes, and then applied a specific sequence of tests to identify factorial effects. This sequence of tests applied was designed to control for gene based FWER.

  5. Analysis of oligonucleotide array experiments with repeated measures using mixed models.

    Science.gov (United States)

    Li, Hao; Wood, Constance L; Getchell, Thomas V; Getchell, Marilyn L; Stromberg, Arnold J

    2004-12-30

    Two or more factor mixed factorial experiments are becoming increasingly common in microarray data analysis. In this case study, the two factors are presence (Patients with Alzheimer's disease) or absence (Control) of the disease, and brain regions including olfactory bulb (OB) or cerebellum (CER). In the design considered in this manuscript, OB and CER are repeated measurements from the same subject and, hence, are correlated. It is critical to identify sources of variability in the analysis of oligonucleotide array experiments with repeated measures and correlations among data points have to be considered. In addition, multiple testing problems are more complicated in experiments with multi-level treatments or treatment combinations. In this study we adopted a linear mixed model to analyze oligonucleotide array experiments with repeated measures. We first construct a generalized F test to select differentially expressed genes. The Benjamini and Hochberg (BH) procedure of controlling false discovery rate (FDR) at 5% was applied to the P values of the generalized F test. For those genes with significant generalized F test, we then categorize them based on whether the interaction terms were significant or not at the alpha-level (alphanew = 0.0033) determined by the FDR procedure. Since simple effects may be examined for the genes with significant interaction effect, we adopt the protected Fisher's least significant difference test (LSD) procedure at the level of alphanew to control the family-wise error rate (FWER) for each gene examined. A linear mixed model is appropriate for analysis of oligonucleotide array experiments with repeated measures. We constructed a generalized F test to select differentially expressed genes, and then applied a specific sequence of tests to identify factorial effects. This sequence of tests applied was designed to control for gene based FWER.

  6. The vineyard yeast microbiome, a mixed model microbial map.

    Directory of Open Access Journals (Sweden)

    Mathabatha Evodia Setati

    Full Text Available Vineyards harbour a wide variety of microorganisms that play a pivotal role in pre- and post-harvest grape quality and will contribute significantly to the final aromatic properties of wine. The aim of the current study was to investigate the spatial distribution of microbial communities within and between individual vineyard management units. For the first time in such a study, we applied the Theory of Sampling (TOS to sample gapes from adjacent and well established commercial vineyards within the same terroir unit and from several sampling points within each individual vineyard. Cultivation-based and molecular data sets were generated to capture the spatial heterogeneity in microbial populations within and between vineyards and analysed with novel mixed-model networks, which combine sample correlations and microbial community distribution probabilities. The data demonstrate that farming systems have a significant impact on fungal diversity but more importantly that there is significant species heterogeneity between samples in the same vineyard. Cultivation-based methods confirmed that while the same oxidative yeast species dominated in all vineyards, the least treated vineyard displayed significantly higher species richness, including many yeasts with biocontrol potential. The cultivatable yeast population was not fully representative of the more complex populations seen with molecular methods, and only the molecular data allowed discrimination amongst farming practices with multivariate and network analysis methods. Importantly, yeast species distribution is subject to significant intra-vineyard spatial fluctuations and the frequently reported heterogeneity of tank samples of grapes harvested from single vineyards at the same stage of ripeness might therefore, at least in part, be due to the differing microbiota in different sections of the vineyard.

  7. The vineyard yeast microbiome, a mixed model microbial map.

    Science.gov (United States)

    Setati, Mathabatha Evodia; Jacobson, Daniel; Andong, Ursula-Claire; Bauer, Florian Franz; Bauer, Florian

    2012-01-01

    Vineyards harbour a wide variety of microorganisms that play a pivotal role in pre- and post-harvest grape quality and will contribute significantly to the final aromatic properties of wine. The aim of the current study was to investigate the spatial distribution of microbial communities within and between individual vineyard management units. For the first time in such a study, we applied the Theory of Sampling (TOS) to sample gapes from adjacent and well established commercial vineyards within the same terroir unit and from several sampling points within each individual vineyard. Cultivation-based and molecular data sets were generated to capture the spatial heterogeneity in microbial populations within and between vineyards and analysed with novel mixed-model networks, which combine sample correlations and microbial community distribution probabilities. The data demonstrate that farming systems have a significant impact on fungal diversity but more importantly that there is significant species heterogeneity between samples in the same vineyard. Cultivation-based methods confirmed that while the same oxidative yeast species dominated in all vineyards, the least treated vineyard displayed significantly higher species richness, including many yeasts with biocontrol potential. The cultivatable yeast population was not fully representative of the more complex populations seen with molecular methods, and only the molecular data allowed discrimination amongst farming practices with multivariate and network analysis methods. Importantly, yeast species distribution is subject to significant intra-vineyard spatial fluctuations and the frequently reported heterogeneity of tank samples of grapes harvested from single vineyards at the same stage of ripeness might therefore, at least in part, be due to the differing microbiota in different sections of the vineyard.

  8. Factors Affecting Malnutrition in Developing Countries: A Linear Mixed Model Approach

    Directory of Open Access Journals (Sweden)

    Sohair F. Higazi

    2012-11-01

    Full Text Available  AbstractThe main objective of this study is to pinpoint the main factors that affect the percentage who suffers of malnutrition in developing countries. Three locations are randomly chosen: Asia, Africa, and Middle east and North Africa ( MENA; A total of 96 countries were chosen randomly from 137  developing countries of the three locations; and were cross classified by " Location" and  " Human Development Index (HDI as high, middle, and low (UNDP,  2005.  Data for the study was compiled from FAO (2005. The analysis started with seven explanatory variables and the dependent variable; however, stepwise regression reveals that the average Protein intake and Infant mortality rate were the only two significant variables. "Location and "HDI" are dummy coded and OLS regression is performed using the two significant variables, but the only significant variable was the "average protein intake". OLS multiple regression Model is re-applied to the data using dummy variables technique with interaction with the "average Protein intake", nine regression equations were reached.The Linear Mixed effect Models are also applied, using "location" as the random factor and "HDI" as the fixed factor. Five models were applied: (1 a null model (baseline modelwhere no predictors are introduced to the model; (2 the fixed model: where predictors used are the  covariate and the HDI; (3 the random model: where predictors used are  the covariate and Location ; (4 the mixed model: where predictors used are the covariate and the HDI I  ( fixed and the location( random; and (5 the random coefficient model: where predictors used are  the covariate ,  the HDI Index  and the location but produces different prediction equations that differ in slopes and intercepts. Models are compared based on information criterions. The random coefficient model produces the least criterion values and thus fits better than all previous ones. A comparison between the Random Coefficient

  9. Factors Affecting Malnutrition in Developing Countries: A Linear Mixed Model Approach

    Directory of Open Access Journals (Sweden)

    Sohair F. Higazi

    2012-11-01

    Full Text Available  AbstractThe main objective of this study is to pinpoint the main factors that affect the percentage who suffers of malnutrition in developing countries. Three locations are randomly chosen: Asia, Africa, and Middle east and North Africa ( MENA; A total of 96 countries were chosen randomly from 137  developing countries of the three locations; and were cross classified by " Location" and  " Human Development Index (HDI as high, middle, and low (UNDP,  2005.  Data for the study was compiled from FAO (2005. The analysis started with seven explanatory variables and the dependent variable; however, stepwise regression reveals that the average Protein intake and Infant mortality rate were the only two significant variables. "Location and "HDI" are dummy coded and OLS regression is performed using the two significant variables, but the only significant variable was the "average protein intake". OLS multiple regression Model is re-applied to the data using dummy variables technique with interaction with the "average Protein intake", nine regression equations were reached.The Linear Mixed effect Models are also applied, using "location" as the random factor and "HDI" as the fixed factor. Five models were applied: (1 a null model (baseline modelwhere no predictors are introduced to the model; (2 the fixed model: where predictors used are the  covariate and the HDI; (3 the random model: where predictors used are  the covariate and Location ; (4 the mixed model: where predictors used are the covariate and the HDI I  ( fixed and the location( random; and (5 the random coefficient model: where predictors used are  the covariate ,  the HDI Index  and the location but produces different prediction equations that differ in slopes and intercepts. Models are compared based on information criterions. The random coefficient model produces the least criterion values and thus fits better than all previous ones. A comparison between the Random Coefficient

  10. An Ant-Based Model for Multiple Sequence Alignment

    CERN Document Server

    Guinand, Frédéric

    2008-01-01

    Multiple sequence alignment is a key process in today's biology, and finding a relevant alignment of several sequences is much more challenging than just optimizing some improbable evaluation functions. Our approach for addressing multiple sequence alignment focuses on the building of structures in a new graph model: the factor graph model. This model relies on block-based formulation of the original problem, formulation that seems to be one of the most suitable ways for capturing evolutionary aspects of alignment. The structures are implicitly built by a colony of ants laying down pheromones in the factor graphs, according to relations between blocks belonging to the different sequences.

  11. Evolving Four Part Harmony Using a Multiple Worlds Model

    DEFF Research Database (Denmark)

    Scirea, Marco; Brown, Joseph Alexander

    2015-01-01

    This application of the Multiple Worlds Model examines a collaborative fitness model for generating four part harmonies. In this model we have multiple populations and the fitness of the individuals is based on the ability of a member from each population to work with the members of other...... populations. We present the result of two experiments: the generation of compositions, given a static voice line, both in a constrained and unconstrained harmonic framework. The remaining three voices are evolved using this collaborative fitness function, which looks for a number of classical composition...

  12. Efficient Adoption and Assessment of Multiple Process Improvement Reference Models

    Directory of Open Access Journals (Sweden)

    Simona Jeners

    2013-06-01

    Full Text Available A variety of reference models such as CMMI, COBIT or ITIL support IT organizations to improve their processes. These process improvement reference models (IRMs cover different domains such as IT development, IT Services or IT Governance but also share some similarities. As there are organizations that address multiple domains and need to coordinate their processes in their improvement we present MoSaIC, an approach to support organizations to efficiently adopt and conform to multiple IRMs. Our solution realizes a semantic integration of IRMs based on common meta-models. The resulting IRM integration model enables organizations to efficiently implement and asses multiple IRMs and to benefit from synergy effects.

  13. Degenerate four-wave mixing in room-temperature GaAs/GaAlAs multiple quantum well structures

    Science.gov (United States)

    Miller, D. A. B.; Chemla, D. S.; Eilenberger, D. J.; Smith, P. W.; Gossard, A. C.; Wiegman, W.

    1983-06-01

    Degenerate four-wave mixing (DFWM) is of current interest both for practical applications (e.g., phase conjugation) and as a physical probe. DFWM makes it possible to detect very small nonlinear changes in refraction. In connection with the present investigation, the first observations of DFWM in GaAs/GaAlAs multiple quantum well structures (MQW's) at room temperature are reported. By combining DFWM and nonlinear absorption results, a direct measurement of the nonlinear refraction near the band gap of the MQW is conducted. The obtained value is compared with previous estimates. The measurements are of practical importance for possible low-power optical devices compatible with laser diodes based either on DFWM, nonlinear refraction (such as optical bistability) of nonlinear absorption. The MQW samples were grown by molecular beam epitaxy (MBE) on GaAs substrates, with the MQW layers sandwiched between GaAlAs cap layers which are transparent at the considered wavelengths.

  14. A methodology to calibrate pedestrian walker models using multiple objectives

    NARCIS (Netherlands)

    Campanella, M.C.; Daamen, W.; Hoogendoorn, S.P.

    2012-01-01

    The application of walker models to simulate real situations require accuracy in several traffic situations. One strategy to obtain a generic model is to calibrate the parameters in several situations using multiple-objective functions in the optimization process. In this paper, we propose a general

  15. Multilayer Numerical Modeling of Flows through Vegetation Using a Mixing-Length Turbulence Model

    Directory of Open Access Journals (Sweden)

    Hector Barrios-Piña

    2014-07-01

    Full Text Available This work focuses on the effects of vegetation on a fluid flow pattern. In this numerical research, we verify the applicability of a simpler turbulence model than the commonly used k-" model to predict the mean flow through vegetation. The novel characteristic of this turbulence model is that the horizontal mixing-length is explicitly calculated and coupled with a multi-layer approach for the vertical mixing-length, within a general three-dimensional eddy-viscosity formulation. This mixing-length turbulence model has been validated in previous works for different kinds of non-vegetated flows. The hydrodynamic numerical model used for simulations is based on the Reynolds-averaged Navier–Stokes equations for shallow water flows, where a vegetation shear stress term is considered to reproduce the effects of drag forces on flow. A second-order approximation is used for spatial discretization and a semi-implicit Lagrangian–Eulerian scheme is used for time discretization. In order to validate the numerical results, we compare them against experimental data reported in the literature. The comparisons are carried out for two cases of study: submerged vegetation and submerged and emergent vegetation, both within an open channel flow.

  16. Hierarchical Bayesian modeling of random and residual variance-covariance matrices in bivariate mixed effects models.

    Science.gov (United States)

    Bello, Nora M; Steibel, Juan P; Tempelman, Robert J

    2010-06-01

    Bivariate mixed effects models are often used to jointly infer upon covariance matrices for both random effects (u) and residuals (e) between two different phenotypes in order to investigate the architecture of their relationship. However, these (co)variances themselves may additionally depend upon covariates as well as additional sets of exchangeable random effects that facilitate borrowing of strength across a large number of clusters. We propose a hierarchical Bayesian extension of the classical bivariate mixed effects model by embedding additional levels of mixed effects modeling of reparameterizations of u-level and e-level (co)variances between two traits. These parameters are based upon a recently popularized square-root-free Cholesky decomposition and are readily interpretable, each conveniently facilitating a generalized linear model characterization. Using Markov Chain Monte Carlo methods, we validate our model based on a simulation study and apply it to a joint analysis of milk yield and calving interval phenotypes in Michigan dairy cows. This analysis indicates that the e-level relationship between the two traits is highly heterogeneous across herds and depends upon systematic herd management factors.

  17. A Proposed Model of Retransformed Qualitative Data within a Mixed Methods Research Design

    Science.gov (United States)

    Palladino, John M.

    2009-01-01

    Most models of mixed methods research design provide equal emphasis of qualitative and quantitative data analyses and interpretation. Other models stress one method more than the other. The present article is a discourse about the investigator's decision to employ a mixed method design to examine special education teachers' advocacy and…

  18. A Proposed Model of Retransformed Qualitative Data within a Mixed Methods Research Design

    Science.gov (United States)

    Palladino, John M.

    2009-01-01

    Most models of mixed methods research design provide equal emphasis of qualitative and quantitative data analyses and interpretation. Other models stress one method more than the other. The present article is a discourse about the investigator's decision to employ a mixed method design to examine special education teachers' advocacy and…

  19. Translational mixed-effects PKPD modelling of recombinant human growth hormone - from hypophysectomized rat to patients

    DEFF Research Database (Denmark)

    Thorsted, A; Thygesen, P; Agersø, H;

    2016-01-01

    BACKGROUND AND PURPOSE: We aimed to develop a mechanistic mixed-effects pharmacokinetic (PK)-pharmacodynamic (PD) (PKPD) model for recombinant human growth hormone (rhGH) in hypophysectomized rats and to predict the human PKPD relationship. EXPERIMENTAL APPROACH: A non-linear mixed-effects model...

  20. Immersed boundary lattice Boltzmann model based on multiple relaxation times.

    Science.gov (United States)

    Lu, Jianhua; Han, Haifeng; Shi, Baochang; Guo, Zhaoli

    2012-01-01

    As an alterative version of the lattice Boltzmann models, the multiple relaxation time (MRT) lattice Boltzmann model introduces much less numerical boundary slip than the single relaxation time (SRT) lattice Boltzmann model if some special relationship between the relaxation time parameters is chosen. On the other hand, most current versions of the immersed boundary lattice Boltzmann method, which was first introduced by Feng and improved by many other authors, suffer from numerical boundary slip as has been investigated by Le and Zhang. To reduce such a numerical boundary slip, an immerse boundary lattice Boltzmann model based on multiple relaxation times is proposed in this paper. A special formula is given between two relaxation time parameters in the model. A rigorous analysis and the numerical experiments carried out show that the numerical boundary slip reduces dramatically by using the present model compared to the single-relaxation-time-based model.

  1. Running Effects on Lepton Mixing Angles in Flavour Models with Type I Seesaw

    CERN Document Server

    Lin, Y; Paris, A

    2009-01-01

    We study renormalization group running effects on neutrino mixing patterns when a (type I) seesaw model is implemented by suitable flavour symmetries. We are particularly interested in mass-independent mixing patterns to which the widely studied tribimaximal mixing pattern belongs. In this class of flavour models, the running contribution from neutrino Yukawa coupling, which is generally dominant at energies above the seesaw threshold, can be absorbed by a small shift on neutrino mass eigenvalues leaving mixing angles unchanged. Consequently, in the whole running energy range, the change in mixing angles is due to the contribution coming from charged lepton sector. Subsequently, we analyze in detail these effects in an explicit flavour model for tribimaximal neutrino mixing based on an A4 discrete symmetry group. We find that for normally ordered light neutrinos, the tribimaximal prediction is essentially stable under renormalization group evolution. On the other hand, in the case of inverted hierarchy, the d...

  2. Finite mixture models for the computation of isotope ratios in mixed isotopic samples

    Science.gov (United States)

    Koffler, Daniel; Laaha, Gregor; Leisch, Friedrich; Kappel, Stefanie; Prohaska, Thomas

    2013-04-01

    Finite mixture models have been used for more than 100 years, but have seen a real boost in popularity over the last two decades due to the tremendous increase in available computing power. The areas of application of mixture models range from biology and medicine to physics, economics and marketing. These models can be applied to data where observations originate from various groups and where group affiliations are not known, as is the case for multiple isotope ratios present in mixed isotopic samples. Recently, the potential of finite mixture models for the computation of 235U/238U isotope ratios from transient signals measured in individual (sub-)µm-sized particles by laser ablation - multi-collector - inductively coupled plasma mass spectrometry (LA-MC-ICPMS) was demonstrated by Kappel et al. [1]. The particles, which were deposited on the same substrate, were certified with respect to their isotopic compositions. Here, we focus on the statistical model and its application to isotope data in ecogeochemistry. Commonly applied evaluation approaches for mixed isotopic samples are time-consuming and are dependent on the judgement of the analyst. Thus, isotopic compositions may be overlooked due to the presence of more dominant constituents. Evaluation using finite mixture models can be accomplished unsupervised and automatically. The models try to fit several linear models (regression lines) to subgroups of data taking the respective slope as estimation for the isotope ratio. The finite mixture models are parameterised by: • The number of different ratios. • Number of points belonging to each ratio-group. • The ratios (i.e. slopes) of each group. Fitting of the parameters is done by maximising the log-likelihood function using an iterative expectation-maximisation (EM) algorithm. In each iteration step, groups of size smaller than a control parameter are dropped; thereby the number of different ratios is determined. The analyst only influences some control

  3. Numerical modeling of mixing in large stably stratified enclosures using TRACMIX++

    Science.gov (United States)

    Christensen, Jakob

    This PhD dissertation focuses on the numerical modeling of stably stratified large enclosures. In stably stratified volumes, the distribution of temperature, species concentration etc become essentially 1-D throughout most of the enclosure. When the fluid in an enclosure is stratified, wall boundary buoyant jets, forced buoyant jets (injection of fluid) and natural convection plumes become the primary sources of mixing. The time constants for the buoyant jets may be considered as much smaller than the time constant for the mixing of the stratified ambient fluid, provided the combined volume occupied by the buoyant jets is small compared to the volume of the enclosure. Therefore, fluid transport by the buoyant jets may be considered as occurring instantaneously. For this reason this work focuses on deriving a numerical method which is able to solve the 1-D vertical fluid conservation equations, as given in Peterson (1994). Starting with the Eulerian fluid conservation equations given in Peterson (1994), a set of Lagrangian fluid conservation equations were derived. Combining the Lagrangian approach with operator splitting such that the convective step and the diffusive step is separated renders a very efficient, accurate, and stable numerical method as it is shown in this text. Since the stratified flow field frequently exhibits very strong gradients or so-called fronts, the generation of these fronts has to be accurately detected and tracked by the numerical method. Flow in stably stratified large enclosure has typically been modeled in the past using 1- or 2-zone models. The present model is new in that it belongs to the K-zone models where the number of zones is arbitrarily large and depends on the complexity of the solution and the accuracy requirement set by the user. Because fronts are present in the flow field, a Lagrangian type numerical method is used. A Lagrangian method facilitates front tracking and prevents numerical diffusion from altering the shape of

  4. Numerical modelling of sandstone uniaxial compression test using a mix-mode cohesive fracture model

    CERN Document Server

    Gui, Yilin; Kodikara, Jayantha

    2015-01-01

    A mix-mode cohesive fracture model considering tension, compression and shear material behaviour is presented, which has wide applications to geotechnical problems. The model considers both elastic and inelastic displacements. Inelastic displacement comprises fracture and plastic displacements. The norm of inelastic displacement is used to control the fracture behaviour. Meantime, a failure function describing the fracture strength is proposed. Using the internal programming FISH, the cohesive fracture model is programmed into a hybrid distinct element algorithm as encoded in Universal Distinct Element Code (UDEC). The model is verified through uniaxial tension and direct shear tests. The developed model is then applied to model the behaviour of a uniaxial compression test on Gosford sandstone. The modelling results indicate that the proposed cohesive fracture model is capable of simulating combined failure behaviour applicable to rock.

  5. Multiple QoS modeling and algorithm in computational grid

    Institute of Scientific and Technical Information of China (English)

    Li Chunlin; Feng Meilai; Li Layuan

    2007-01-01

    Multiple QoS modeling and algorithm in grid system is considered.Grid QoS requirements can be formulated as a utility function for each task as a weighted sum of its each dimensional QoS utility functions.Multiple QoS constraint resource scheduling optimization in computational grid is distributed to two subproblems: optimization of grid user and grid resource provider.Grid QoS scheduling can be achieved by solving sub problems via an iterative algorithm.

  6. Modeling considerations for using expression data from multiple species.

    Science.gov (United States)

    Siewert, Elizabeth; Kechris, Katerina J

    2013-10-15

    Although genome-wide expression data sets from multiple species are now more commonly generated, there have been few studies on how to best integrate this type of correlated data into models. Starting with a single-species, linear regression model that predicts transcription factor binding sites as a case study, we investigated how best to take into account the correlated expression data when extending this model to multiple species. Using a multivariate regression model, we accounted for the phylogenetic relationships among the species in two ways: (i) a repeated-measures model, where the error term is constrained; and (ii) a Bayesian hierarchical model, where the prior distributions of the regression coefficients are constrained. We show that both multiple-species models improve predictive performance over the single-species model. When compared with each other, the repeated-measures model outperformed the Bayesian model. We suggest a possible explanation for the better performance of the model with the constrained error term. Copyright © 2013 John Wiley & Sons, Ltd.

  7. MATRIX (Multiconfiguration Aerosol TRacker of mIXing state: an aerosol microphysical module for global atmospheric models

    Directory of Open Access Journals (Sweden)

    S. E. Bauer

    2008-10-01

    Full Text Available A new aerosol microphysical module MATRIX, the Multiconfiguration Aerosol TRacker of mIXing state, and its application in the Goddard Institute for Space Studies (GISS climate model (ModelE are described. This module, which is based on the quadrature method of moments (QMOM, represents nucleation, condensation, coagulation, internal and external mixing, and cloud-drop activation and provides aerosol particle mass and number concentration and particle size information for up to 16 mixed-mode aerosol populations. Internal and external mixing among aerosol components sulfate, nitrate, ammonium, carbonaceous aerosols, dust and sea-salt particles are represented. The solubility of each aerosol population, which is explicitly calculated based on its soluble and insoluble components, enables calculation of the dependence of cloud drop activation on the microphysical characterization of multiple soluble aerosol populations.

    A detailed model description and results of box-model simulations of various aerosol population configurations are presented. The box model experiments demonstrate the dependence of cloud activating aerosol number concentration on the aerosol population configuration; comparisons to sectional models are quite favorable. MATRIX is incorporated into the GISS climate model and simulations are carried out primarily to assess its performance/efficiency for global-scale atmospheric model application. Simulation results were compared with aircraft and station measurements of aerosol mass and number concentration and particle size to assess the ability of the new method to yield data suitable for such comparison. The model accurately captures the observed size distributions in the Aitken and accumulation modes up to particle diameter 1 μm, in which sulfate, nitrate, black and organic carbon are predominantly located; however the model underestimates coarse-mode number concentration and size, especially in the marine environment

  8. MATRIX (Multiconfiguration Aerosol TRacker of mIXing state): an aerosol microphysical module for global atmospheric models

    Energy Technology Data Exchange (ETDEWEB)

    Bauer,S.E.; Wright, D.L.; Koch, D.; Lewis, E.R.; McGraw, R.; Chang, L.-S.; Schwartz, S.E.; Ruedy, R.

    2008-10-21

    A new aerosol microphysical module MATRIX, the Multiconfiguration Aerosol TRacker of mIXing state, and its application in the Goddard Institute for Space Studies (GISS) climate model (ModelE) are described. This module, which is based on the quadrature method of moments (QMOM), represents nucleation, condensation, coagulation, internal and external mixing, and cloud-drop activation and provides aerosol particle mass and number concentration and particle size information for up to 16 mixed-mode aerosol populations. Internal and external mixing among aerosol components sulfate, nitrate, ammonium, carbonaceous aerosols, dust and sea-salt particles are represented. The solubility of each aerosol population, which is explicitly calculated based on its soluble and insoluble components, enables calculation of the dependence of cloud drop activation on the microphysical characterization of multiple soluble aerosol populations. A detailed model description and results of box-model simulations of various aerosol population configurations are presented. The box model experiments demonstrate the dependence of cloud activating aerosol number concentration on the aerosol population configuration; comparisons to sectional models are quite favorable. MATRIX is incorporated into the GISS climate model and simulations are carried out primarily to assess its performance/efficiency for global-scale atmospheric model application. Simulation results were compared with aircraft and station measurements of aerosol mass and number concentration and particle size to assess the ability of the new method to yield data suitable for such comparison. The model accurately captures the observed size distributions in the Aitken and accumulation modes up to particle diameter 1 {micro}m, in which sulfate, nitrate, black and organic carbon are predominantly located; however the model underestimates coarse-mode number concentration and size, especially in the marine environment. This is more likely due

  9. Models and measures of mixing and effective diffusion

    CERN Document Server

    Lin, Zhi; Doering, Charles R

    2010-01-01

    Mixing a passive scalar field by stirring can be measured in a variety of ways including tracer particle dispersion, via the flux-gradient relationship, or by suppression of scalar concentration variations in the presence of inhomogeneous sources and sinks. The mixing efficiency or efficacy of a particular flow is often expressed in terms of enhanced diffusivity and quantified as an effective diffusion coefficient. In this work we compare and contrast several notions of effective diffusivity. We thoroughly examine the fundamental case of a steady sinusoidal shear flow mixing a scalar sustained by a steady sinusoidal source-sink distribution to explore apparent quantitative inconsistencies among the measures. Ultimately the conflicts are attributed to the noncommutative asymptotic limits of large P$\\acute{\\text{e}}$clet number and large length-scale separation. We then propose another approach, a generalization of Batchelor's 1949 theory of diffusion in homogeneous turbulence, that helps unify the particle dis...

  10. Effects of internal mixing and aggregate morphology on optical properties of black carbon using a discrete dipole approximation model

    Directory of Open Access Journals (Sweden)

    B. Scarnato

    2012-10-01

    , such as a decrease in the intensity and multiple modes at different angles corresponding to different mixing states.

    DDSCAT, being flexible on the geometry and refractive index of the particle, can be used to study the effect of mixing state and complex morphology on optical properties of realistic BC aggregates. This study shows that DDSCAT predicts morphology and mixing state dependent optical properties that have been reported previously and are relevant to radiative transfer and climate modeling and interpretation of remote sensing measurements.

  11. A time-dependent Mixing Model for PDF Methods in Heterogeneous Aquifers

    Science.gov (United States)

    Schüler, Lennart; Suciu, Nicolae; Knabner, Peter; Attinger, Sabine

    2016-04-01

    Predicting the transport of groundwater contaminations remains a demanding task, especially with respect to the heterogeneity of the subsurface and the large measurement uncertainties. A risk analysis also includes the quantification of the uncertainty in order to evaluate how accurate the predictions are. Probability density function (PDF) methods are a promising alternative to predicting the transport of solutes in groundwater under uncertainty. They make it possible to derive the evolution equations of the mean concentration and the concentration variance, which can be used as a first measure of uncertainty. A mixing model, also known as a dissipation model, is essential for both methods. Finding a satisfactory mixing model is still an open question and due to the rather elaborate PDF methods, a difficult undertaking. Both the PDF equation and the concentration variance equation depend on the same mixing model. This connection is used to find and test an improved mixing model for the much easier to handle concentration variance. Subsequently, this mixing model is transferred to the PDF equation and tested. The newly proposed mixing model yields significantly improved results for both variance modelling and PDF modelling. The implications of the new mixing model for different kinds of flow conditions are discussed and some comments are made on efficiently handling spatially resolved higher moments.

  12. AgMIP Training in Multiple Crop Models and Tools

    Science.gov (United States)

    Boote, Kenneth J.; Porter, Cheryl H.; Hargreaves, John; Hoogenboom, Gerrit; Thornburn, Peter; Mutter, Carolyn

    2015-01-01

    The Agricultural Model Intercomparison and Improvement Project (AgMIP) has the goal of using multiple crop models to evaluate climate impacts on agricultural production and food security in developed and developing countries. There are several major limitations that must be overcome to achieve this goal, including the need to train AgMIP regional research team (RRT) crop modelers to use models other than the ones they are currently familiar with, plus the need to harmonize and interconvert the disparate input file formats used for the various models. Two activities were followed to address these shortcomings among AgMIP RRTs to enable them to use multiple models to evaluate climate impacts on crop production and food security. We designed and conducted courses in which participants trained on two different sets of crop models, with emphasis on the model of least experience. In a second activity, the AgMIP IT group created templates for inputting data on soils, management, weather, and crops into AgMIP harmonized databases, and developed translation tools for converting the harmonized data into files that are ready for multiple crop model simulations. The strategies for creating and conducting the multi-model course and developing entry and translation tools are reviewed in this chapter.

  13. Non-linear mixed-effects pharmacokinetic/pharmacodynamic modelling in NLME using differential equations

    DEFF Research Database (Denmark)

    Tornøe, Christoffer Wenzel; Agersø, Henrik; Madsen, Henrik

    2004-01-01

    The standard software for non-linear mixed-effect analysis of pharmacokinetic/phar-macodynamic (PK/PD) data is NONMEM while the non-linear mixed-effects package NLME is an alternative as tong as the models are fairly simple. We present the nlmeODE package which combines the ordinary differential...... equation (ODE) solver package odesolve and the non-Linear mixed effects package NLME thereby enabling the analysis of complicated systems of ODEs by non-linear mixed-effects modelling. The pharmacokinetics of the anti-asthmatic drug theophylline is used to illustrate the applicability of the nlme...

  14. Mixed Models: Combining incompatible scalar models in any space-time dimension

    Science.gov (United States)

    Klauder, John R.

    2017-01-01

    Traditionally, covariant scalar field theory models are either super renormalizable, strictly renormalizable, or nonrenormalizable. The goal of “Mixed Models” is to make sense of sums of these distinct examples, e.g. gφ34 + g‧φ 36 + g″φ 38, which includes an example of each kind for space-time dimension n = 3. We show how the several interactions such mixed models have may be turned on and off in any order without any difficulties. Analogous results are shown for gφn4 + g‧φ n138, etc. for all n ≥ 3. Different categories hold for n = 2 such as, e.g. gP(φ)2 + g‧NP(φ) 2, that involve polynomial (P) and suitable nonpolynomial (NP) interactions, etc. Analogous situations for n = 1 (time alone) offer simple “toy” examples of how such mixed models may be constructed. As a general rule, if the introduction of a specific interaction term reduces the domain of the free classical action, we invariably find that the introduction of the associated quantum interaction leads, effectively, to a “nonrenormalizable” quantum theory. However, in special cases, a classical interaction that does not reduce the domain of the classical free action may generate an “unsatisfactory” quantum theory, which generally involves a model-specific, different approach to become “satisfactory.” We will encounter both situations in our analysis.

  15. Modelling subject-specific childhood growth using linear mixed-effect models with cubic regression splines.

    Science.gov (United States)

    Grajeda, Laura M; Ivanescu, Andrada; Saito, Mayuko; Crainiceanu, Ciprian; Jaganath, Devan; Gilman, Robert H; Crabtree, Jean E; Kelleher, Dermott; Cabrera, Lilia; Cama, Vitaliano; Checkley, William

    2016-01-01

    Childhood growth is a cornerstone of pediatric research. Statistical models need to consider individual trajectories to adequately describe growth outcomes. Specifically, well-defined longitudinal models are essential to characterize both population and subject-specific growth. Linear mixed-effect models with cubic regression splines can account for the nonlinearity of growth curves and provide reasonable estimators of population and subject-specific growth, velocity and acceleration. We provide a stepwise approach that builds from simple to complex models, and account for the intrinsic complexity of the data. We start with standard cubic splines regression models and build up to a model that includes subject-specific random intercepts and slopes and residual autocorrelation. We then compared cubic regression splines vis-à-vis linear piecewise splines, and with varying number of knots and positions. Statistical code is provided to ensure reproducibility and improve dissemination of methods. Models are applied to longitudinal height measurements in a cohort of 215 Peruvian children followed from birth until their fourth year of life. Unexplained variability, as measured by the variance of the regression model, was reduced from 7.34 when using ordinary least squares to 0.81 (p linear mixed-effect models with random slopes and a first order continuous autoregressive error term. There was substantial heterogeneity in both the intercept (p linear regression equation for both estimation and prediction of population- and individual-level growth in height. We show that cubic regression splines are superior to linear regression splines for the case of a small number of knots in both estimation and prediction with the full linear mixed effect model (AIC 19,352 vs. 19,598, respectively). While the regression parameters are more complex to interpret in the former, we argue that inference for any problem depends more on the estimated curve or differences in curves rather

  16. On the thermoluminescent interactive multiple-trap system (IMTS) model: is it a simple model?

    Energy Technology Data Exchange (ETDEWEB)

    Gil T, M. I.; Perez C, L. [UNAM, Facultad de Quimica, Ciudad Universitaria, 04510 Ciudad de Mexico (Mexico); Cruz Z, E.; Furetta, C.; Roman L, J., E-mail: ecruz@nucleares.unam.mx [UNAM, Instituto de Ciencias Nucleares, Ciudad Universitaria, 04510 Ciudad de Mexico (Mexico)

    2016-10-15

    In the thermally stimulated luminescence phenomenon, named thermoluminescence (Tl), the electrons and holes generated by the radiation-matter interaction can be trapped by the metastable levels in the band gap of the solid. Following, the electron can be thermally releases into the conduction band and a radiatively recombination with hole close to the recombination center occurred and the glow curve is emitted. However, the complex mechanism of trapping and thermally releases occurred in the band gap of solid. Some models, such as; first, second and general-order kinetics, have been well established to explain the behaviour of the glow curves and their defects recombination mechanism. In this work, expressions for and Interactive Multiple-Trap System model (IMTS) was obtained assuming: a set of discrete electron traps (active traps At), another set of thermally disconnected trap (TDT) and a recombination center (Rc) too. A numerical analysis based on the Levenberg-Marquardt method in conjunction with an implicit Rosenbrock method was taken into account to simulate the glow curve. The numerical method was tested through synthetic Tl glow curves for a wide range of trap parameters. The activation energy and kinetics order were determined using values from the General Order Kinetics (GOK) model as entry data to IMTS model. This model was tested using the experimental glow curves obtained from Ce or Eu-doped MgF{sub 2}(LiF) polycrystals samples. Results shown that the IMTS model can predict more accurately the behavior of the Tl glow curves that those obtained by the GOK modified by Rasheedy and by the Mixed Order Kinetics model. (Author)

  17. Modeling microstructural evolution of multiple texture components during recrystallization

    DEFF Research Database (Denmark)

    Vandermeer, R.A.; Juul Jensen, D.

    1994-01-01

    using stereological point and lineal measurements of microstructural properties in combination with EBSP analysis for orientation determinations. The potential of the models to describe the observed recrystallization behavior of heavily cold-rolled commercial aluminum was demonstrated. A successful MPM......Models were formulated in an effort to characterize recrystallization in materials with multiple texture components. The models are based on a microstructural path methodology (MPM). Experimentally the microstructural evolution of conmmercial aluminum during recrystallization was characterized...

  18. Mixed-domain multi-simulator statistical device modeling and yiel-driven design

    OpenAIRE

    Bandler, J.W.; Biernacki, R.M.; S. H. Chen

    1997-01-01

    We present mixed-domain, multi-simulator approaches to device modeling and yield-driven optimization. Intelligent computational interfaces combine and enhance the features of otherwise disjoint simulators. Time-domain, frequency-domain and electromagnetic simulations are integrated for efficient statistical modeling and design with mixed-domain specifications. Our approach is demonstrated by statistical modeling of GaAs MESFETs and yield optimization using, simultaneously, SPICE device models...

  19. Subgrid-scale heat flux modeling for large eddy simulation of turbulent mixed convection

    OpenAIRE

    Morar, Dejan

    2014-01-01

    In the present work, new subgrid-scale (SGS) heat flux model for large eddy simulation (LES) of turbulent mixed convection is developed. The new model explicitly includes the buoyancy production term. It is based on the algebraic equations and dynamic procedure is applied to calculate model coefficients. An experiment on turbulent mixed convection to water in a vertical duct is used for validation of the model.

  20. Mixed-domain multi-simulator statistical device modeling and yiel-driven design

    OpenAIRE

    Bandler, J.W.; Biernacki, R.M.; Chen, S H

    1997-01-01

    We present mixed-domain, multi-simulator approaches to device modeling and yield-driven optimization. Intelligent computational interfaces combine and enhance the features of otherwise disjoint simulators. Time-domain, frequency-domain and electromagnetic simulations are integrated for efficient statistical modeling and design with mixed-domain specifications. Our approach is demonstrated by statistical modeling of GaAs MESFETs and yield optimization using, simultaneously, SPICE device models...

  1. Multiple comparisons in genetic association studies: a hierarchical modeling approach.

    Science.gov (United States)

    Yi, Nengjun; Xu, Shizhong; Lou, Xiang-Yang; Mallick, Himel

    2014-02-01

    Multiple comparisons or multiple testing has been viewed as a thorny issue in genetic association studies aiming to detect disease-associated genetic variants from a large number of genotyped variants. We alleviate the problem of multiple comparisons by proposing a hierarchical modeling approach that is fundamentally different from the existing methods. The proposed hierarchical models simultaneously fit as many variables as possible and shrink unimportant effects towards zero. Thus, the hierarchical models yield more efficient estimates of parameters than the traditional methods that analyze genetic variants separately, and also coherently address the multiple comparisons problem due to largely reducing the effective number of genetic effects and the number of statistically "significant" effects. We develop a method for computing the effective number of genetic effects in hierarchical generalized linear models, and propose a new adjustment for multiple comparisons, the hierarchical Bonferroni correction, based on the effective number of genetic effects. Our approach not only increases the power to detect disease-associated variants but also controls the Type I error. We illustrate and evaluate our method with real and simulated data sets from genetic association studies. The method has been implemented in our freely available R package BhGLM (http://www.ssg.uab.edu/bhglm/).

  2. Manifold learning for object tracking with multiple nonlinear models.

    Science.gov (United States)

    Nascimento, Jacinto C; Silva, Jorge G; Marques, Jorge S; Lemos, Joao M

    2014-04-01

    This paper presents a novel manifold learning algorithm for high-dimensional data sets. The scope of the application focuses on the problem of motion tracking in video sequences. The framework presented is twofold. First, it is assumed that the samples are time ordered, providing valuable information that is not presented in the current methodologies. Second, the manifold topology comprises multiple charts, which contrasts to the most current methods that assume one single chart, being overly restrictive. The proposed algorithm, Gaussian process multiple local models (GP-MLM), can deal with arbitrary manifold topology by decomposing the manifold into multiple local models that are probabilistic combined using Gaussian process regression. In addition, the paper presents a multiple filter architecture where standard filtering techniques are integrated within the GP-MLM. The proposed approach exhibits comparable performance of state-of-the-art trackers, namely multiple model data association and deep belief networks, and compares favorably with Gaussian process latent variable models. Extensive experiments are presented using real video data, including a publicly available database of lip sequences and left ventricle ultrasound images, in which the GP-MLM achieves state of the art results.

  3. A Bayesian Hierarchical Model for Relating Multiple SNPs within Multiple Genes to Disease Risk

    Directory of Open Access Journals (Sweden)

    Lewei Duan

    2013-01-01

    Full Text Available A variety of methods have been proposed for studying the association of multiple genes thought to be involved in a common pathway for a particular disease. Here, we present an extension of a Bayesian hierarchical modeling strategy that allows for multiple SNPs within each gene, with external prior information at either the SNP or gene level. The model involves variable selection at the SNP level through latent indicator variables and Bayesian shrinkage at the gene level towards a prior mean vector and covariance matrix that depend on external information. The entire model is fitted using Markov chain Monte Carlo methods. Simulation studies show that the approach is capable of recovering many of the truly causal SNPs and genes, depending upon their frequency and size of their effects. The method is applied to data on 504 SNPs in 38 candidate genes involved in DNA damage response in the WECARE study of second breast cancers in relation to radiotherapy exposure.

  4. Linking effort and fishing mortality in a mixed fisheries model

    DEFF Research Database (Denmark)

    Thøgersen, Thomas Talund; Hoff, Ayoe; Frost, Hans Staby

    2012-01-01

    in fish stocks has led to overcapacity in many fisheries, leading to incentives for overfishing. Recent research has shown that the allocation of effort among fleets can play an important role in mitigating overfishing when the targeting covers a range of species (multi-species—i.e., so-called mixed...

  5. Nonlinearity detection in hyperspectral images using a polynomial post-nonlinear mixing model.

    Science.gov (United States)

    Altmann, Yoann; Dobigeon, Nicolas; Tourneret, Jean-Yves

    2013-04-01

    This paper studies a nonlinear mixing model for hyperspectral image unmixing and nonlinearity detection. The proposed model assumes that the pixel reflectances are nonlinear functions of pure spectral components contaminated by an additive white Gaussian noise. These nonlinear functions are approximated by polynomials leading to a polynomial post-nonlinear mixing model. We have shown in a previous paper that the parameters involved in the resulting model can be estimated using least squares methods. A generalized likelihood ratio test based on the estimator of the nonlinearity parameter is proposed to decide whether a pixel of the image results from the commonly used linear mixing model or from a more general nonlinear mixing model. To compute the test statistic associated with the nonlinearity detection, we propose to approximate the variance of the estimated nonlinearity parameter by its constrained Cramér-Rao bound. The performance of the detection strategy is evaluated via simulations conducted on synthetic and real data. More precisely, synthetic data have been generated according to the standard linear mixing model and three nonlinear models from the literature. The real data investigated in this study are extracted from the Cuprite image, which shows that some minerals seem to be nonlinearly mixed in this image. Finally, it is interesting to note that the estimated abundance maps obtained with the post-nonlinear mixing model are in good agreement with results obtained in previous studies.

  6. [Mixed transcortical aphasia due to multiple deep white matter infarction in the dominant cerebral hemisphere: a case report].

    Science.gov (United States)

    Sato, K; Sakajiri, K; Komai, K; Yoshikawa, H; Takamori, M; Notoya, M

    1997-08-01

    We report a case of mixed transcortical aphasia (MTA) due to multiple cerebral infarction in the dominant hemisphere in an 80-year-old right-handed woman without hemiplegia. Her spontaneous speech was markedly reduced and auditory comprehension, reading and writing were severely disturbed. Although the repetition of sentences (at most 3 words) was relatively preserved, her speech was echolalic. Brain MRI showed bilateral multiple deep white matter infarction and subcortical infarction of the left parietal lobe, including left angular gyrus, but no abnormal signal intensities were detected in either Wernicke's or Broca's area. SPECT indicated a significant decrease in mean cerebral blood flow in both hemispheres, but there was no focal hypoperfusion in either speech area. We thought that the focal hypoperfusion observed in the right cerebellum indicated crossed cerebellar diaschisis. Electroencephalogram showed a diffuse reduction in the incidence of alpha waves in the left cerebral hemisphere. From these findings, we suggest that widespread hypofunction in the dominant hemisphere was important for the occurrence of MTA.

  7. Core Hunter II: fast core subset selection based on multiple genetic diversity measures using Mixed Replica search

    Directory of Open Access Journals (Sweden)

    Beukelaer Herman De

    2012-11-01

    Full Text Available Abstract Background Sampling core subsets from genetic resources while maintaining as much as possible the genetic diversity of the original collection is an important but computationally complex task for gene bank managers. The Core Hunter computer program was developed as a tool to generate such subsets based on multiple genetic measures, including both distance measures and allelic diversity indices. At first we investigate the effect of minimum (instead of the default mean distance measures on the performance of Core Hunter. Secondly, we try to gain more insight into the performance of the original Core Hunter search algorithm through comparison with several other heuristics working with several realistic datasets of varying size and allelic composition. Finally, we propose a new algorithm (Mixed Replica search for Core Hunter II with the aim of improving the diversity of the constructed core sets and their corresponding generation times. Results Our results show that the introduction of minimum distance measures leads to core sets in which all accessions are sufficiently distant from each other, which was not always obtained when optimizing mean distance alone. Comparison of the original Core Hunter algorithm, Replica Exchange Monte Carlo (REMC, with simpler heuristics shows that the simpler algorithms often give very good results but with lower runtimes than REMC. However, the performance of the simpler algorithms is slightly worse than REMC under lower sampling intensities and some heuristics clearly struggle with minimum distance measures. In comparison the new advanced Mixed Replica search algorithm (MixRep, which uses heterogeneous replicas, was able to sample core sets with equal or higher diversity scores than REMC and the simpler heuristics, often using less computation time than REMC. Conclusion The REMC search algorithm used in the original Core Hunter computer program performs well, sometimes leading to slightly better results

  8. Measurements of the aerosol chemical composition and mixing state in the Po Valley using multiple spectroscopic techniques

    Science.gov (United States)

    Decesari, S.; Allan, J.; Plass-Duelmer, C.; Williams, B. J.; Paglione, M.; Facchini, M. C.; O'Dowd, C.; Harrison, R. M.; Gietl, J. K.; Coe, H.; Giulianelli, L.; Gobbi, G. P.; Lanconelli, C.; Carbone, C.; Worsnop, D.; Lambe, A. T.; Ahern, A. T.; Moretti, F.; Tagliavini, E.; Elste, T.; Gilge, S.; Zhang, Y.; Dall'Osto, M.

    2014-11-01

    The use of co-located multiple spectroscopic techniques can provide detailed information on the atmospheric processes regulating aerosol chemical composition and mixing state. So far, field campaigns heavily equipped with aerosol mass spectrometers have been carried out mainly in large conurbations and in areas directly affected by their outflow, whereas lesser efforts have been dedicated to continental areas characterised by a less dense urbanisation. We present here the results obtained at a background site in the Po Valley, Italy, in summer 2009. For the first time in Europe, six state-of-the-art spectrometric techniques were used in parallel: aerosol time-of-flight mass spectrometer (ATOFMS), two aerosol mass spectrometers (high-resolution time-of-flight aerosol mass spectrometer - HR-ToF-AMS and soot particle aerosol mass spectrometer - SP-AMS), thermal desorption aerosol gas chromatography (TAG), chemical ionisation mass spectrometry (CIMS) and (offline) proton nuclear magnetic resonance (1H-NMR) spectroscopy. The results indicate that, under high-pressure conditions, atmospheric stratification at night and early morning hours led to the accumulation of aerosols produced by anthropogenic sources distributed over the Po Valley plain. Such aerosols include primary components such as black carbon (BC), secondary semivolatile compounds such as ammonium nitrate and amines and a class of monocarboxylic acids which correspond to the AMS cooking organic aerosol (COA) already identified in urban areas. In daytime, the entrainment of aged air masses in the mixing layer is responsible for the accumulation of low-volatility oxygenated organic aerosol (LV-OOA) and also for the recycling of non-volatile primary species such as black carbon. According to organic aerosol source apportionment, anthropogenic aerosols accumulating in the lower layers overnight accounted for 38% of organic aerosol mass on average, another 21% was accounted for by aerosols recirculated in

  9. Complexities in Isolation and Purification of Multiple Viruses from Mixed Viral Infections: Viral Interference, Persistence and Exclusion.

    Directory of Open Access Journals (Sweden)

    Naveen Kumar

    Full Text Available Successful purification of multiple viruses from mixed infections remains a challenge. In this study, we investigated peste des petits ruminants virus (PPRV and foot-and-mouth disease virus (FMDV mixed infection in goats. Rather than in a single cell type, cytopathic effect (CPE of the virus was observed in cocultured Vero/BHK-21 cells at 6th blind passage (BP. PPRV, but not FMDV could be purified from the virus mixture by plaque assay. Viral RNA (mixture transfection in BHK-21 cells produced FMDV but not PPRV virions, a strategy which we have successfully employed for the first time to eliminate the negative-stranded RNA virus from the virus mixture. FMDV phenotypes, such as replication competent but noncytolytic, cytolytic but defective in plaque formation and, cytolytic but defective in both plaque formation and standard FMDV genome were observed respectively, at passage level BP8, BP15 and BP19 and hence complicated virus isolation in the cell culture system. Mixed infection was not found to induce any significant antigenic and genetic diversity in both PPRV and FMDV. Further, we for the first time demonstrated the viral interference between PPRV and FMDV. Prior transfection of PPRV RNA, but not Newcastle disease virus (NDV and rotavirus RNA resulted in reduced FMDV replication in BHK-21 cells suggesting that the PPRV RNA-induced interference was specifically directed against FMDV. On long-term coinfection of some acute pathogenic viruses (all possible combinations of PPRV, FMDV, NDV and buffalopox virus in Vero cells, in most cases, one of the coinfecting viruses was excluded at passage level 5 suggesting that the long-term coinfection may modify viral persistence. To the best of our knowledge, this is the first documented evidence describing a natural mixed infection of FMDV and PPRV. The study not only provides simple and reliable methodologies for isolation and purification of two epidemiologically and economically important groups of

  10. Emergence of parochial altruism in well-mixed populations of multiple groups

    Science.gov (United States)

    Gao, Shiping; Wu, Te; Nie, Suli; Wang, Long

    2015-10-01

    Understanding the evolution of parochial altruism is of great importance. We here institute an analytical model to study the emergence of parochial altruism in group-structured populations. Individuals' strategy is contingent on interacting partners' group property. Only when sharing common tag(s), they play the prisoner's dilemma game; otherwise they play the punishment game. The conditions for the emergence of parochial altruism are specified for weak selection. Emergence of parochial altruism is promoted by assortment as well as by intergroup punishment. Furthermore, the affiliation plays a negative (positive) role in the emergence of parochial altruism for low (high) mutation.

  11. Analyzing the Mixing Dynamics of an Industrial Batch Bin Blender via Discrete Element Modeling Method

    Directory of Open Access Journals (Sweden)

    Maitraye Sen

    2017-04-01

    Full Text Available A discrete element model (DEM has been developed for an industrial batch bin blender in which three different types of materials are mixed. The mixing dynamics have been evaluated from a model-based study with respect to the blend critical quality attributes (CQAs which are relative standard deviation (RSD and segregation intensity. In the actual industrial setup, a sensor mounted on the blender lid is used to determine the blend composition in this region. A model-based analysis has been used to understand the mixing efficiency in the other zones inside the blender and to determine if the data obtained near the blender-lid region are able to provide a good representation of the overall blend quality. Sub-optimal mixing zones have been identified and other potential sampling locations have been investigated in order to obtain a good approximation of the blend variability. The model has been used to study how the mixing efficiency can be improved by varying the key processing parameters, i.e., blender RPM/speed, fill level/volume and loading order. Both segregation intensity and RSD reduce at a lower fill level and higher blender RPM and are a function of the mixing time. This work demonstrates the use of a model-based approach to improve process knowledge regarding a pharmaceutical mixing process. The model can be used to acquire qualitative information about the influence of different critical process parameters and equipment geometry on the mixing dynamics.

  12. Mixed finite element - discontinuous finite volume element discretization of a general class of multicontinuum models

    Science.gov (United States)

    Ruiz-Baier, Ricardo; Lunati, Ivan

    2016-10-01

    We present a novel discretization scheme tailored to a class of multiphase models that regard the physical system as consisting of multiple interacting continua. In the framework of mixture theory, we consider a general mathematical model that entails solving a system of mass and momentum equations for both the mixture and one of the phases. The model results in a strongly coupled and nonlinear system of partial differential equations that are written in terms of phase and mixture (barycentric) velocities, phase pressure, and saturation. We construct an accurate, robust and reliable hybrid method that combines a mixed finite element discretization of the momentum equations with a primal discontinuous finite volume-element discretization of the mass (or transport) equations. The scheme is devised for unstructured meshes and relies on mixed Brezzi-Douglas-Marini approximations of phase and total velocities, on piecewise constant elements for the approximation of phase or total pressures, as well as on a primal formulation that employs discontinuous finite volume elements defined on a dual diamond mesh to approximate scalar fields of interest (such as volume fraction, total density, saturation, etc.). As the discretization scheme is derived for a general formulation of multicontinuum physical systems, it can be readily applied to a large class of simplified multiphase models; on the other, the approach can be seen as a generalization of these models that are commonly encountered in the literature and employed when the latter are not sufficiently accurate. An extensive set of numerical test cases involving two- and three-dimensional porous media are presented to demonstrate the accuracy of the method (displaying an optimal convergence rate), the physics-preserving properties of the mixed-primal scheme, as well as the robustness of the method (which is successfully used to simulate diverse physical phenomena such as density fingering, Terzaghi's consolidation

  13. Comparative quantification of physically and numerically induced mixing in ocean models

    Science.gov (United States)

    Burchard, Hans; Rennau, Hannes

    A diagnostic method for calculating physical and numerical mixing of tracers in ocean models is presented. The physical mixing is defined as the turbulent mean tracer variance decay rate. The numerical mixing due to discretisation errors of tracer advection schemes is shown to be the decay rate between the advected square of the tracer variance and the square of the advected tracer and can be easily implemented into any ocean model. The applicability of the method is demonstrated for four test cases: (i) a one-dimensional linear advection equation with periodic boundary conditions, (ii) a two-dimensional flat-bottom lock exchange test case without mixing, (iii) a two-dimensional marginal sea overflow study with mixing and entrainment and (iv) the DOME test case with a dense bottom current propagating down a broad linear slope. The method has a number of advantages over previously introduced estimates for numerical mixing.

  14. Statistical Modelling of Cardiovascular Data. An Introduction to Linear Mixed Models

    OpenAIRE

    Gonçalves, Paulo; Lenoir, Christophe; Heymes, Christophe; Swynghedauw, Bernard; Lavergne, Christian

    2005-01-01

    Most of statistical approaches in cardiovascular research were based on variance analysis (ANOVA). However, most of the time, the assumption that data are independent is violated since several measures are performed on the same subject (repeated measures). In addition, the presence of intra- and inter-observers variability can potentially obscure significant differences. The linear mixed model (LMM) is an extended multivariate linear regression method of analysis that accounts for both fixed ...

  15. Modeling Temporal Behavior in Large Networks: A Dynamic Mixed-Membership Model

    Energy Technology Data Exchange (ETDEWEB)

    Rossi, R; Gallagher, B; Neville, J; Henderson, K

    2011-11-11

    Given a large time-evolving network, how can we model and characterize the temporal behaviors of individual nodes (and network states)? How can we model the behavioral transition patterns of nodes? We propose a temporal behavior model that captures the 'roles' of nodes in the graph and how they evolve over time. The proposed dynamic behavioral mixed-membership model (DBMM) is scalable, fully automatic (no user-defined parameters), non-parametric/data-driven (no specific functional form or parameterization), interpretable (identifies explainable patterns), and flexible (applicable to dynamic and streaming networks). Moreover, the interpretable behavioral roles are generalizable, computationally efficient, and natively supports attributes. We applied our model for (a) identifying patterns and trends of nodes and network states based on the temporal behavior, (b) predicting future structural changes, and (c) detecting unusual temporal behavior transitions. We use eight large real-world datasets from different time-evolving settings (dynamic and streaming). In particular, we model the evolving mixed-memberships and the corresponding behavioral transitions of Twitter, Facebook, IP-Traces, Email (University), Internet AS, Enron, Reality, and IMDB. The experiments demonstrate the scalability, flexibility, and effectiveness of our model for identifying interesting patterns, detecting unusual structural transitions, and predicting the future structural changes of the network and individual nodes.

  16. Model Analysis of Influences of Aerosol Mixing State upon Its Optical Properties in East Asia

    Institute of Scientific and Technical Information of China (English)

    HAN Xiao; ZHANG Meigen; ZHU Lingyun; XU Liren

    2013-01-01

    The air quality model system RAMS (Regional Atmospheric Modeling System)-CMAQ (Models-3 Community Multi-scale Air Quality) coupled with an aerosol optical/radiative module was applied to investigate the impact of different aerosol mixing states (i.e.,externally mixed,half externally and half internally mixed,and internally mixed) on radiative forcing in East Asia.The simulation results show that the aerosol optical depth (AOD) generally increased when the aerosol mixing state changed from externally mixed to internally mixed,while the single scattering albedo (SSA) decreased.Therefore,the scattering and absorption properties of aerosols can be significantly affected by the change of aerosol mixing states.Comparison of simulated and observed SSAs at five AERONET (Aerosol Robotic Network) sites suggests that SSA could be better estimated by considering aerosol particles to be internally mixed.Model analysis indicates that the impact of aerosol mixing state upon aerosol direct radiative forcing (DRF) is complex.Generally,the cooling effect of aerosols over East Asia are enhanced in the northern part of East Asia (Northern China,Korean peninsula,and the surrounding area of Japan) and are reduced in the southern part of East Asia (Sichuan Basin and Southeast China) by internal mixing process,and the variation range can reach ±5 W m-2.The analysis shows that the internal mixing between inorganic salt and dust is likely the main reason that the cooling effect strengthens.Conversely,the internal mixture of anthropogenic aerosols,including sulfate,nitrate,ammonium,black carbon,and organic carbon,could obviously weaken the cooling effect.

  17. A Finite Element Model for Mixed Porohyperelasticity with Transport, Swelling, and Growth.

    Science.gov (United States)

    Armstrong, Michelle Hine; Buganza Tepole, Adrián; Kuhl, Ellen; Simon, Bruce R; Vande Geest, Jonathan P

    2016-01-01

    The purpose of this manuscript is to establish a unified theory of porohyperelasticity with transport and growth and to demonstrate the capability of this theory using a finite element model developed in MATLAB. We combine the theories of volumetric growth and mixed porohyperelasticity with transport and swelling (MPHETS) to derive a new method that models growth of biological soft tissues. The conservation equations and constitutive equations are developed for both solid-only growth and solid/fluid growth. An axisymmetric finite element framework is introduced for the new theory of growing MPHETS (GMPHETS). To illustrate the capabilities of this model, several example finite element test problems are considered using model geometry and material parameters based on experimental data from a porcine coronary artery. Multiple growth laws are considered, including time-driven, concentration-driven, and stress-driven growth. Time-driven growth is compared against an exact analytical solution to validate the model. For concentration-dependent growth, changing the diffusivity (representing a change in drug) fundamentally changes growth behavior. We further demonstrate that for stress-dependent, solid-only growth of an artery, growth of an MPHETS model results in a more uniform hoop stress than growth in a hyperelastic model for the same amount of growth time using the same growth law. This may have implications in the context of developing residual stresses in soft tissues under intraluminal pressure. To our knowledge, this manuscript provides the first full description of an MPHETS model with growth. The developed computational framework can be used in concert with novel in-vitro and in-vivo experimental approaches to identify the governing growth laws for various soft tissues.

  18. Improving Mixed-phase Cloud Parameterization in Climate Model with the ACRF Measurements

    Energy Technology Data Exchange (ETDEWEB)

    Wang, Zhien [Univ. of Wyoming, Laramie, WY (United States)

    2016-12-13

    Mixed-phase cloud microphysical and dynamical processes are still poorly understood, and their representation in GCMs is a major source of uncertainties in overall cloud feedback in GCMs. Thus improving mixed-phase cloud parameterizations in climate models is critical to reducing the climate forecast uncertainties. This study aims at providing improved knowledge of mixed-phase cloud properties from the long-term ACRF observations and improving mixed-phase clouds simulations in the NCAR Community Atmosphere Model version 5 (CAM5). The key accomplishments are: 1) An improved retrieval algorithm was developed to provide liquid droplet concentration for drizzling or mixed-phase stratiform clouds. 2) A new ice concentration retrieval algorithm for stratiform mixed-phase clouds was developed. 3) A strong seasonal aerosol impact on ice generation in Arctic mixed-phase clouds was identified, which is mainly attributed to the high dust occurrence during the spring season. 4) A suite of multi-senor algorithms was applied to long-term ARM observations at the Barrow site to provide a complete dataset (LWC and effective radius profile for liquid phase, and IWC, Dge profiles and ice concentration for ice phase) to characterize Arctic stratiform mixed-phase clouds. This multi-year stratiform mixed-phase cloud dataset provides necessary information to study related processes, evaluate model stratiform mixed-phase cloud simulations, and improve model stratiform mixed-phase cloud parameterization. 5). A new in situ data analysis method was developed to quantify liquid mass partition in convective mixed-phase clouds. For the first time, we reliably compared liquid mass partitions in stratiform and convective mixed-phase clouds. Due to the different dynamics in stratiform and convective mixed-phase clouds, the temperature dependencies of liquid mass partitions are significantly different due to much higher ice concentrations in convective mixed phase clouds. 6) Systematic evaluations

  19. Swell impact on wind stress and atmospheric mixing in a regional coupled atmosphere-wave model

    Science.gov (United States)

    Wu, Lichuan; Rutgersson, Anna; Sahlée, Erik; Guo Larsén, Xiaoli

    2016-07-01

    Over the ocean, the atmospheric turbulence can be significantly affected by swell waves. Change in the atmospheric turbulence affects the wind stress and atmospheric mixing over swell waves. In this study, the influence of swell on atmospheric mixing and wind stress is introduced into an atmosphere-wave-coupled regional climate model, separately and combined. The swell influence on atmospheric mixing is introduced into the atmospheric mixing length formula by adding a swell-induced contribution to the mixing. The swell influence on the wind stress under wind-following swell, moderate-range wind, and near-neutral and unstable stratification conditions is introduced by changing the roughness length. Five year simulation results indicate that adding the swell influence on atmospheric mixing has limited influence, only slightly increasing the near-surface wind speed; in contrast, adding the swell influence on wind stress reduces the near-surface wind speed. Introducing the wave influence roughness length has a larger influence than does adding the swell influence on mixing. Compared with measurements, adding the swell influence on both atmospheric mixing and wind stress gives the best model performance for the wind speed. The influence varies with wave characteristics for different sea basins. Swell occurs infrequently in the studied area, and one could expect more influence in high-swell-frequency areas (i.e., low-latitude ocean). We conclude that the influence of swell on atmospheric mixing and wind stress should be considered when developing climate models.

  20. Bootstrapping Mixed Correlators in the 3D Ising Model

    CERN Document Server

    Kos, Filip; Simmons-Duffin, David

    2014-01-01

    We study the conformal bootstrap for systems of correlators involving non-identical operators. The constraints of crossing symmetry and unitarity for such mixed correlators can be phrased in the language of semidefinite programming. We apply this formalism to the simplest system of mixed correlators in 3D CFTs with a $\\mathbb{Z}_2$ global symmetry. For the leading $\\mathbb{Z}_2$-odd operator $\\sigma$ and $\\mathbb{Z}_2$-even operator $\\epsilon$, we obtain numerical constraints on the allowed dimensions $(\\Delta_\\sigma, \\Delta_\\epsilon)$ assuming that $\\sigma$ and $\\epsilon$ are the only relevant scalars in the theory. These constraints yield a small closed region in $(\\Delta_\\sigma, \\Delta_\\epsilon)$ space compatible with the known values in the 3D Ising CFT.

  1. Mixed Higher Order Variational Model for Image Recovery

    Directory of Open Access Journals (Sweden)

    Pengfei Liu

    2014-01-01

    Full Text Available A novel mixed higher order regularizer involving the first and second degree image derivatives is proposed in this paper. Using spectral decomposition, we reformulate the new regularizer as a weighted L1-L2 mixed norm of image derivatives. Due to the equivalent formulation of the proposed regularizer, an efficient fast projected gradient algorithm combined with monotone fast iterative shrinkage thresholding, called, FPG-MFISTA, is designed to solve the resulting variational image recovery problems under majorization-minimization framework. Finally, we demonstrate the effectiveness of the proposed regularization scheme by the experimental comparisons with total variation (TV scheme, nonlocal TV scheme, and current second degree methods. Specifically, the proposed approach achieves better results than related state-of-the-art methods in terms of peak signal to ratio (PSNR and restoration quality.

  2. Modeling continuous self-report measures of perceived emotion using generalized additive mixed models.

    Science.gov (United States)

    McKeown, Gary J; Sneddon, Ian

    2014-03-01

    Emotion research has long been dominated by the "standard method" of displaying posed or acted static images of facial expressions of emotion. While this method has been useful, it is unable to investigate the dynamic nature of emotion expression. Although continuous self-report traces have enabled the measurement of dynamic expressions of emotion, a consensus has not been reached on the correct statistical techniques that permit inferences to be made with such measures. We propose generalized additive models and generalized additive mixed models as techniques that can account for the dynamic nature of such continuous measures. These models allow us to hold constant shared components of responses that are due to perceived emotion across time, while enabling inference concerning linear differences between groups. The generalized additive mixed model approach is preferred, as it can account for autocorrelation in time series data and allows emotion decoding participants to be modeled as random effects. To increase confidence in linear differences, we assess the methods that address interactions between categorical variables and dynamic changes over time. In addition, we provide comments on the use of generalized additive models to assess the effect size of shared perceived emotion and discuss sample sizes. Finally, we address additional uses, the inference of feature detection, continuous variable interactions, and measurement of ambiguity.

  3. Higgs-radion mixing in stabilized brane world models

    CERN Document Server

    Boos, Edward E; Perfilov, Maxim A; Smolyakov, Mikhail N; Volobuev, Igor P

    2015-01-01

    We consider a quartic interaction of the Higgs and Goldberger-Wise fields, which connects the mechanism of the extra dimension size stabilization with spontaneous symmetry breaking on our brane and gives rise to a coupling of the Higgs field to the radion and its KK tower. We estimate a possible influence of this coupling on the Higgs-radion mixing and study its experimental consequences.

  4. Photonic states mixing beyond the plasmon hybridization model

    Science.gov (United States)

    Suryadharma, Radius N. S.; Iskandar, Alexander A.; Tjia, May-On

    2016-07-01

    A study is performed on a photonic-state mixing-pattern in an insulator-metal-insulator cylindrical silver nanoshell and its rich variations induced by changes in the geometry and dielectric media of the system, representing the combined influences of plasmon coupling strength and cavity effects. This study is performed in terms of the photonic local density of states (LDOS) calculated using the Green tensor method, in order to elucidate those combined effects. The energy profiles of LDOS inside the dielectric core are shown to exhibit consistently growing number of redshifted photonic states due to an enhanced plasmon coupling induced state mixing arising from decreased shell thickness, increased cavity size effect, and larger symmetry breaking effect induced by increased permittivity difference between the core and the background media. Further, an increase in cavity size leads to increased additional peaks that spread out toward the lower energy regime. A systematic analysis of those variations for a silver nanoshell with a fixed inner radius in vacuum background reveals a certain pattern of those growing number of redshifted states with an analytic expression for the corresponding energy downshifts, signifying a photonic state mixing scheme beyond the commonly adopted plasmon hybridization scheme. Finally, a remarkable correlation is demonstrated between the LDOS energy profiles outside the shell and the corresponding scattering efficiencies.

  5. Photonic states mixing beyond the plasmon hybridization model

    Energy Technology Data Exchange (ETDEWEB)

    Suryadharma, Radius N. S.; Iskandar, Alexander A., E-mail: iskandar@fi.itb.ac.id; Tjia, May-On [Physics of Magnetism and Photonics Research Division, Faculty of Mathematics and Natural Sciences, Institut Teknologi Bandung, Jl. Ganesha 10, Bandung 40132 (Indonesia)

    2016-07-28

    A study is performed on a photonic-state mixing-pattern in an insulator-metal-insulator cylindrical silver nanoshell and its rich variations induced by changes in the geometry and dielectric media of the system, representing the combined influences of plasmon coupling strength and cavity effects. This study is performed in terms of the photonic local density of states (LDOS) calculated using the Green tensor method, in order to elucidate those combined effects. The energy profiles of LDOS inside the dielectric core are shown to exhibit consistently growing number of redshifted photonic states due to an enhanced plasmon coupling induced state mixing arising from decreased shell thickness, increased cavity size effect, and larger symmetry breaking effect induced by increased permittivity difference between the core and the background media. Further, an increase in cavity size leads to increased additional peaks that spread out toward the lower energy regime. A systematic analysis of those variations for a silver nanoshell with a fixed inner radius in vacuum background reveals a certain pattern of those growing number of redshifted states with an analytic expression for the corresponding energy downshifts, signifying a photonic state mixing scheme beyond the commonly adopted plasmon hybridization scheme. Finally, a remarkable correlation is demonstrated between the LDOS energy profiles outside the shell and the corresponding scattering efficiencies.

  6. A Collaborative Scheduling Model for the Supply-Hub with Multiple Suppliers and Multiple Manufacturers

    Directory of Open Access Journals (Sweden)

    Guo Li

    2014-01-01

    Full Text Available This paper investigates a collaborative scheduling model in the assembly system, wherein multiple suppliers have to deliver their components to the multiple manufacturers under the operation of Supply-Hub. We first develop two different scenarios to examine the impact of Supply-Hub. One is that suppliers and manufacturers make their decisions separately, and the other is that the Supply-Hub makes joint decisions with collaborative scheduling. The results show that our scheduling model with the Supply-Hub is a NP-complete problem, therefore, we propose an auto-adapted differential evolution algorithm to solve this problem. Moreover, we illustrate that the performance of collaborative scheduling by the Supply-Hub is superior to separate decision made by each manufacturer and supplier. Furthermore, we also show that the algorithm proposed has good convergence and reliability, which can be applicable to more complicated supply chain environment.

  7. Seniors managing multiple medications: using mixed methods to view the home care safety lens.

    Science.gov (United States)

    Lang, Ariella; Macdonald, Marilyn; Marck, Patricia; Toon, Lynn; Griffin, Melissa; Easty, Tony; Fraser, Kimberly; MacKinnon, Neil; Mitchell, Jonathan; Lang, Eddy; Goodwin, Sharon

    2015-12-12

    . There is a need for policy makers, health system leaders, care providers, researchers, and educators to work with home care clients and caregivers on three key messages for improvement: adapt care delivery models to the home care landscape; develop a palette of user-centered tools to support medication safety in the home; and strengthen health systems integration.

  8. First Look at Photometric Reduction via Mixed-Model Regression (Poster abstract)

    Science.gov (United States)

    Dose, E.

    2016-12-01

    (Abstract only) Mixed-model regression is proposed as a new approach to photometric reduction, especially for variable-star photometry in several filters. Mixed-model regression adds to normal multivariate regression certain "random effects": categorical-variable terms that model and extract specific systematic errors such as image-to-image zero-point fluctuations (cirrus effect) or even errors in comp-star catalog magnitudes.

  9. Design evaluation and optimisation in crossover pharmacokinetic studies analysed by nonlinear mixed effects models

    OpenAIRE

    Nguyen, Thu Thuy; Bazzoli, Caroline; Mentré, France

    2012-01-01

    International audience; Bioequivalence or interaction trials are commonly studied in crossover design and can be analysed by nonlinear mixed effects models as an alternative to noncompartmental approach. We propose an extension of the population Fisher information matrix in nonlinear mixed effects models to design crossover pharmacokinetic trials, using a linearisation of the model around the random effect expectation, including within-subject variability and discrete covariates fixed or chan...

  10. Multiple commodities in statistical microeconomics: Model and market

    Science.gov (United States)

    Baaquie, Belal E.; Yu, Miao; Du, Xin

    2016-11-01

    A statistical generalization of microeconomics has been made in Baaquie (2013). In Baaquie et al. (2015), the market behavior of single commodities was analyzed and it was shown that market data provides strong support for the statistical microeconomic description of commodity prices. The case of multiple commodities is studied and a parsimonious generalization of the single commodity model is made for the multiple commodities case. Market data shows that the generalization can accurately model the simultaneous correlation functions of up to four commodities. To accurately model five or more commodities, further terms have to be included in the model. This study shows that the statistical microeconomics approach is a comprehensive and complete formulation of microeconomics, and which is independent to the mainstream formulation of microeconomics.

  11. 3D scene modeling from multiple range views

    Science.gov (United States)

    Sequeira, Vitor; Goncalves, Joao G. M.; Ribeiro, M. Isabel

    1995-09-01

    This paper presents a new 3D scene analysis system that automatically reconstructs the 3D geometric model of real-world scenes from multiple range images acquired by a laser range finder on board of a mobile robot. The reconstruction is achieved through an integrated procedure including range data acquisition, geometrical feature extraction, registration, and integration of multiple views. Different descriptions of the final 3D scene model are obtained: a polygonal triangular mesh, a surface description in terms of planar and biquadratics surfaces, and a 3D boundary representation. Relevant experimental results from the complete 3D scene modeling are presented. Direct applications of this technique include 3D reconstruction and/or update of architectual or industrial plans into a CAD model, design verification of buildings, navigation of autonomous robots, and input to virtual reality systems.

  12. Particle multiplicities and particle ratios in excluded volume model

    CERN Document Server

    Mishra, M

    2008-01-01

    One of the most surprising results is to find that a consistent description of all the experimental results on particle multiplicities and particle ratios obtained from the lowest AGS to the highest RHIC energies is possible within the framework of a thermal statistical model. We propose here a thermodynamically consistent excluded-volume model involving an interacting multi-component hadron gas. We find that the energy dependence of the total multiplicities of strange and non-strange hadrons obtained in this model agrees closely with the experimental results. It indicates that the freeze out volume of the fireball is uniformly the same for all the particles. We have also compared the variation of the particle ratios such as $/, /, K^{-}/K^{+}, \\bar{p}/p, \\bar{\\Lambda}/\\Lambda, \\bar{\\Xi}/\\Xi, \\bar{\\Omega}/\\Omega, /, /, /$ and $/$ with respect to the center-of-mass energy as predicted by our model with the recent experimental data.

  13. A Survey of Health Care Models that Encompass Multiple Departments

    NARCIS (Netherlands)

    Vanberkel, Peter T.; Boucherie, Richardus J.; Hans, Elias W.; Hurink, Johann L.; Litvak, Nelli

    2009-01-01

    In this survey we review quantitative health care models to illustrate the extent to which they encompass multiple hospital departments. The paper provides general overviews of the relationships that exists between major hospital departments and describes how these relationships are accounted for by

  14. A survey of health care models that encompass multiple departments

    NARCIS (Netherlands)

    Vanberkel, P.T.; Boucherie, Richardus J.; Hans, Elias W.; Hurink, Johann L.; Litvak, Nelli

    2009-01-01

    In this survey we review quantitative health care models to illustrate the extent to which they encompass multiple hospital departments. The paper provides general overviews of the relationships that exists between major hospital departments and describes how these relationships are accounted for by

  15. EAE : imperfect but useful models of multiple sclerosis

    NARCIS (Netherlands)

    't Hart, Bert A.; Gran, Bruno; Weissert, Robert

    2011-01-01

    The high failure rate of immunotherapies in multiple sclerosis (MS) clinical trials demonstrates problems in translating new treatment concepts from animal models to the patient. One main reason for this 'immunotherapy gap' is the usage of immunologically immature, microbiologically clean and geneti

  16. Multiple-Model Adaptive Switching Control for Uncertain Multivariable Systems

    NARCIS (Netherlands)

    Baldi, Simone; Battistelli, Giorgio; Mari, Daniele; Mosca, Edoardo; Tesi, Pietro

    2011-01-01

    This paper addresses the problem of controlling an uncertain multi-input multi-output (MIMO) system by means of adaptive switching control schemes. In particular, the paper aims at extending the approach of multiple-model unfalsified adaptive switched control, so far restricted to single-input singl

  17. Geant4 models for simulation of multiple scattering

    CERN Document Server

    Ivanchenko, V N; Maire, M; Urban, L

    2010-01-01

    Recent progress in development of single and multiple scattering models within the Geant4 toolkit is presented. Different options available to users are discussed. The comparisons with the data are shown. The trade of precision versus CPU performance is discussed with the focus on LHC detectors simulation

  18. Fraction Multiplication and Division Models: A Practitioner Reference Paper

    Science.gov (United States)

    Ervin, Heather K.

    2017-01-01

    It is well documented in literature that rational number is an important area of understanding in mathematics. Therefore, it follows that teachers and students need to have an understanding of rational number and related concepts such as fraction multiplication and division. This practitioner reference paper examines models that are important to…

  19. Multiple Imputation of Predictor Variables Using Generalized Additive Models

    NARCIS (Netherlands)

    de Jong, Roel; van Buuren, Stef; Spiess, Martin

    2016-01-01

    The sensitivity of multiple imputation methods to deviations from their distributional assumptions is investigated using simulations, where the parameters of scientific interest are the coefficients of a linear regression model, and values in predictor variables are missing at random. The performanc

  20. A Simple and Unified Model for Spanwise Mixing in Multistage Axial Flow COmpressors

    Institute of Scientific and Technical Information of China (English)

    S.-M.Li; M.-Z.Chen

    1992-01-01

    A basic equation system for meridional throughflow fileds in multistage axial flow compressors has been deduced,containing many unknown correlation terms,which describe different kinds of spanwise mixing mechanism in a unified form.The equation system shows that spanwise mixing of meridional flows in compressors is attributed to three kinds of mechanism:molecular motion,turbulent diffusion,and circumferential non-uniformities,the last of which includes secondary flow effects and others,Therefore the equation system unifles the two models for spanwise mixing coefficients defined and introduced into the basic equation system,a novel,much simpler equation system,without additional unknown correlation terms included,has been obtained.This novel equation system makes throughflow computations including mixing far easier for multistage compressors .It has been rigorously shown that these apparent mixing coefficients contain full information of all the three kinds of mixing mechanism,so that the simpler equation system can also be taken as a unified model for meridional flows with all the dinds of the mixing effects.Calculations of the flow through multistage machines have been made by incorporating the new model into a streamline curvature throughflow calculation method and the improved agreement with experimental data has been obtained.It is believed that the simpler equation system can be apphed to the flows not only in subsonic but in transonic and supersonic compressors if an appropriate model is propsed for the apparent mixing coeffcients.

  1. Modeling relationships between calving traits: a comparison between standard and recursive mixed models

    Directory of Open Access Journals (Sweden)

    Gianola Daniel

    2010-01-01

    Full Text Available Abstract Background The use of structural equation models for the analysis of recursive and simultaneous relationships between phenotypes has become more popular recently. The aim of this paper is to illustrate how these models can be applied in animal breeding to achieve parameterizations of different levels of complexity and, more specifically, to model phenotypic recursion between three calving traits: gestation length (GL, calving difficulty (CD and stillbirth (SB. All recursive models considered here postulate heterogeneous recursive relationships between GL and liabilities to CD and SB, and between liability to CD and liability to SB, depending on categories of GL phenotype. Methods Four models were compared in terms of goodness of fit and predictive ability: 1 standard mixed model (SMM, a model with unstructured (covariance matrices; 2 recursive mixed model 1 (RMM1, assuming that residual correlations are due to the recursive relationships between phenotypes; 3 RMM2, assuming that correlations between residuals and contemporary groups are due to recursive relationships between phenotypes; and 4 RMM3, postulating that the correlations between genetic effects, contemporary groups and residuals are due to recursive relationships between phenotypes. Results For all the RMM considered, the estimates of the structural coefficients were similar. Results revealed a nonlinear relationship between GL and the liabilities both to CD and to SB, and a linear relationship between the liabilities to CD and SB. Differences in terms of goodness of fit and predictive ability of the models considered were negligible, suggesting that RMM3 is plausible. Conclusions The applications examined in this study suggest the plausibility of a nonlinear recursive effect from GL onto CD and SB. Also, the fact that the most restrictive model RMM3, which assumes that the only cause of correlation is phenotypic recursion, performs as well as the others indicates that the

  2. An extended macro traffic flow model accounting for multiple optimal velocity functions with different probabilities

    Science.gov (United States)

    Cheng, Rongjun; Ge, Hongxia; Wang, Jufeng

    2017-08-01

    Due to the maximum velocity and safe headway distance of the different vehicles are not exactly the same, an extended macro model of traffic flow with the consideration of multiple optimal velocity functions with probabilities is proposed in this paper. By means of linear stability theory, the new model's linear stability condition considering multiple probabilities optimal velocity is obtained. The KdV-Burgers equation is derived to describe the propagating behavior of traffic density wave near the neutral stability line through nonlinear analysis. The numerical simulations of influences of multiple maximum velocities and multiple safety distances on model's stability and traffic capacity are carried out. The cases of two different kinds of maximum speeds with same safe headway distance, two different types of safe headway distances with same maximum speed and two different max velocities and two different time-gaps are all explored by numerical simulations. First cases demonstrate that when the proportion of vehicles with a larger vmax increase, the traffic tends to unstable, which also means that jerk and brakes is not conducive to traffic stability and easier to result in stop and go phenomenon. Second cases show that when the proportion of vehicles with greater safety spacing increases, the traffic tends to be unstable, which also means that too cautious assumptions or weak driving skill is not conducive to traffic stability. Last cases indicate that increase of maximum speed is not conducive to traffic stability, while reduction of the safe headway distance is conducive to traffic stability. Numerical simulation manifests that the mixed driving and traffic diversion does not have effect on the traffic capacity when traffic density is low or heavy. Numerical results also show that mixed driving should be chosen to increase the traffic capacity when the traffic density is lower, while the traffic diversion should be chosen to increase the traffic capacity when

  3. Multiple-relaxation-time model for the correct thermohydrodynamic equations.

    Science.gov (United States)

    Zheng, Lin; Shi, Baochang; Guo, Zhaoli

    2008-08-01

    A coupling lattice Boltzmann equation (LBE) model with multiple relaxation times is proposed for thermal flows with viscous heat dissipation and compression work. In this model the fixed Prandtl number and the viscous dissipation problems in the energy equation, which exist in most of the LBE models, are successfully overcome. The model is validated by simulating the two-dimensional Couette flow, thermal Poiseuille flow, and the natural convection flow in a square cavity. It is found that the numerical results agree well with the analytical solutions and/or other numerical results.

  4. Infinite Multiple Membership Relational Modeling for Complex Networks

    DEFF Research Database (Denmark)

    Mørup, Morten; Schmidt, Mikkel Nørgaard; Hansen, Lars Kai

    Learning latent structure in complex networks has become an important problem fueled by many types of networked data originating from practically all fields of science. In this paper, we propose a new non-parametric Bayesian multiplemembership latent feature model for networks. Contrary to existing...... multiplemembership models that scale quadratically in the number of vertices the proposedmodel scales linearly in the number of links admittingmultiple-membership analysis in large scale networks. We demonstrate a connection between the single membership relational model and multiple membership models and show...

  5. Incorporating Student Mobility in Achievement Growth Modeling: A Cross-Classified Multiple Membership Growth Curve Model

    Science.gov (United States)

    Grady, Matthew W.; Beretvas, S. Natasha

    2010-01-01

    Multiple membership random effects models (MMREMs) have been developed for use in situations where individuals are members of multiple higher level organizational units. Despite their availability and the frequency with which multiple membership structures are encountered, no studies have extended the MMREM approach to hierarchical growth curve…

  6. Fluid Flow and Mixing in Non-Isothermal Water Model of Continuous Casting Tundish

    Institute of Scientific and Technical Information of China (English)

    Mehdi ALIZADEH; Hossein EDRIS; Ali SHAFYEI

    2008-01-01

    Fluid flow and mixing of molten steel in a twin-slab-strand continuous casting tundish were investigated using a mixing model under non-isothermal conditions. This model led to a set of ordinary differential equations that were solved with a Runge-Kutta algorithm. Steady state water modeling was carried out under non-isothermal conditions. Experimental data obtained from the water model were used to calibrate the mixing model. Owing to the presence of a mixed convection in the non-isothermal conditions, a channelizing flow would be created in the fluid inside the tundish. A mixing model was designed that was capable of predicting RTD (residence time distribution) curves for different cases in non-isothermal conditions. The relationship between RTD parameters and the Tu (tundish Richardson number) was obtained for various cases under non-isothermal conditions. The results show that the RTD parameters were completely different under isothermal and non-isothermal conditions. The comparison of the RTD curves between the isothermal and non-isothermal conditions presents that the extent of mixing in the tundish in nonisothermal conditions is lower than the mixing extent in isothermal conditions.

  7. Vertical mixing in atmospheric tracer transport models: error characterization and propagation

    Directory of Open Access Journals (Sweden)

    C. Gerbig

    2008-02-01

    Full Text Available Imperfect representation of vertical mixing near the surface in atmospheric transport models leads to uncertainties in modelled tracer mixing ratios. When using the atmosphere as an integrator to derive surface-atmosphere exchange from mixing ratio observations made in the atmospheric boundary layer, this uncertainty has to be quantified and taken into account. A comparison between radiosonde-derived mixing heights and mixing heights derived from ECMWF meteorological data during May–June 2005 in Europe revealed random discrepancies of about 40% for the daytime with insignificant bias errors, and much larger values approaching 100% for nocturnal mixing layers with bias errors also exceeding 50%. The Stochastic Time Inverted Lagrangian Transport (STILT model was used to propagate this uncertainty into CO2 mixing ratio uncertainties, accounting for spatial and temporal error covariance. Average values of 3 ppm were found for the 2 month period, indicating that this represents a large fraction of the overall uncertainty. A pseudo data experiment shows that the error propagation with STILT avoids biases in flux retrievals when applied in inversions. The results indicate that flux inversions employing transport models based on current generation meteorological products have misrepresented an important part of the model error structure likely leading to biases in the estimated mean and uncertainties. We strongly recommend including the solution presented in this work: better, higher resolution atmospheric models, a proper description of correlated random errors, and a modification of the overall sampling strategy.

  8. Factors contributing to the accumulation of reproductive isolation: A mixed model approach.

    Science.gov (United States)

    Castillo, Dean M

    2017-08-01

    The analysis of large datasets describing reproductive isolation between species has been extremely influential in the study of speciation. However, the statistical methods currently used for these data limit the ability to make direct inferences about the factors predicting the evolution of reproductive isolation. As a result, our understanding of iconic patterns and rules of speciation rely on indirect analyses that have clear statistical limitations. Phylogenetic mixed models are commonly used in ecology and evolution, but have not been applied to studies of reproductive isolation. Here I describe a flexible framework using phylogenetic mixed models to analyze data collected at different evolutionary scales, to test both categorical and continuous predictor variables, and to test the effect of multiple predictors on rates and patterns of reproductive isolation simultaneously. I demonstrate the utility of this framework by re-analyzing four classic datasets, from both animals and plants, and evaluating several hypotheses that could not be tested in the original studies: In the Drosophila and Bufonidae datasets, I found support for more rapid accumulation of reproductive isolation in sympatric species pairs compared to allopatric species pairs. Using Silene and Nolana, I found no evidence supporting the hypothesis that floral differentiation elevates postzygotic reproductive isolation. The faster accumulation of postzygotic isolation in sympatry is likely the result of species coexistence determined by the level of postzygotic isolation between species. In addition, floral trait divergence does not appear to translate into pleiotropic effects on postzygotic reproductive isolation. Overall, these methods can allow researchers to test new hypotheses using a single statistical method, while remedying the statistical limitations of several previous methods.

  9. Bayes factor between Student t and Gaussian mixed models within an animal breeding context

    Directory of Open Access Journals (Sweden)

    García-Cortés Luis

    2008-07-01

    Full Text Available Abstract The implementation of Student t mixed models in animal breeding has been suggested as a useful statistical tool to effectively mute the impact of preferential treatment or other sources of outliers in field data. Nevertheless, these additional sources of variation are undeclared and we do not know whether a Student t mixed model is required or if a standard, and less parameterized, Gaussian mixed model would be sufficient to serve the intended purpose. Within this context, our aim was to develop the Bayes factor between two nested models that only differed in a bounded variable in order to easily compare a Student t and a Gaussian mixed model. It is important to highlight that the Student t density converges to a Gaussian process when degrees of freedom tend to infinity. The twomodels can then be viewed as nested models that differ in terms of degrees of freedom. The Bayes factor can be easily calculated from the output of a Markov chain Monte Carlo sampling of the complex model (Student t mixed model. The performance of this Bayes factor was tested under simulation and on a real dataset, using the deviation information criterion (DIC as the standard reference criterion. The two statistical tools showed similar trends along the parameter space, although the Bayes factor appeared to be the more conservative. There was considerable evidence favoring the Student t mixed model for data sets simulated under Student t processes with limited degrees of freedom, and moderate advantages associated with using the Gaussian mixed model when working with datasets simulated with 50 or more degrees of freedom. For the analysis of real data (weight of Pietrain pigs at six months, both the Bayes factor and DIC slightly favored the Student t mixed model, with there being a reduced incidence of outlier individuals in this population.

  10. Swell impact on wind stress and atmospheric mixing in a regional coupled atmosphere-wave model

    DEFF Research Database (Denmark)

    Wu, Lichuan; Rutgersson, Anna; Sahlée, Erik;

    2016-01-01

    Over the ocean, the atmospheric turbulence can be significantly affected by swell waves. Change in the atmospheric turbulence affects the wind stress and atmospheric mixing over swell waves. In this study, the influence of swell on atmospheric mixing and wind stress is introduced into an atmosphere......-wave-coupled regional climate model, separately and combined. The swell influence on atmospheric mixing is introduced into the atmospheric mixing length formula by adding a swell-induced contribution to the mixing. The swell influence on the wind stress under wind-following swell, moderate-range wind, and near......-neutral and unstable stratification conditions is introduced by changing the roughness length. Five year simulation results indicate that adding the swell influence on atmospheric mixing has limited influence, only slightly increasing the near-surface wind speed; in contrast, adding the swell influence on wind stress...

  11. Multiple ontologies in action: composite annotations for biosimulation models.

    Science.gov (United States)

    Gennari, John H; Neal, Maxwell L; Galdzicki, Michal; Cook, Daniel L

    2011-02-01

    There now exists a rich set of ontologies that provide detailed semantics for biological entities of interest. However, there is not (nor should there be) a single source ontology that provides all the necessary semantics for describing biological phenomena. In the domain of physiological biosimulation models, researchers use annotations to convey semantics, and many of these annotations require the use of multiple reference ontologies. Therefore, we have developed the idea of composite annotations that access multiple ontologies to capture the physics-based meaning of model variables. These composite annotations provide the semantic expressivity needed to disambiguate the often-complex features of biosimulation models, and can be used to assist with model merging and interoperability. In this paper, we demonstrate the utility of composite annotations for model merging by describing their use within SemGen, our semantics-based model composition software. More broadly, if orthogonal reference ontologies are to meet their full potential, users need tools and methods to connect and link these ontologies. Our composite annotations and the SemGen tool provide one mechanism for leveraging multiple reference ontologies.

  12. Generative models: Human embryonic stem cells and multiple modeling relations.

    Science.gov (United States)

    Fagan, Melinda Bonnie

    2016-04-01

    Model organisms are at once scientific models and concrete living things. It is widely assumed by philosophers of science that (1) model organisms function much like other kinds of models, and (2) that insofar as their scientific role is distinctive, it is in virtue of representing a wide range of biological species and providing a basis for generalizations about those targets. This paper uses the case of human embryonic stem cells (hESC) to challenge both assumptions. I first argue that hESC can be considered model organisms, analogous to classic examples such as Escherichia coli and Drosophila melanogaster. I then discuss four contrasts between the epistemic role of hESC in practice, and the assumptions about model organisms noted above. These contrasts motivate an alternative view of model organisms as a network of systems related constructively and developmentally to one another. I conclude by relating this result to other accounts of model organisms in recent philosophy of science. Copyright © 2015 Elsevier Ltd. All rights reserved.

  13. Weibull model of multiplicity distribution in hadron-hadron collisions

    Science.gov (United States)

    Dash, Sadhana; Nandi, Basanta K.; Sett, Priyanka

    2016-06-01

    We introduce the use of the Weibull distribution as a simple parametrization of charged particle multiplicities in hadron-hadron collisions at all available energies, ranging from ISR energies to the most recent LHC energies. In statistics, the Weibull distribution has wide applicability in natural processes that involve fragmentation processes. This provides a natural connection to the available state-of-the-art models for multiparticle production in hadron-hadron collisions, which involve QCD parton fragmentation and hadronization. The Weibull distribution describes the multiplicity data at the most recent LHC energies better than the single negative binomial distribution.

  14. Dynamic force spectroscopy on multiple bonds: experiments and model

    CERN Document Server

    Erdmann, T; Nassoy, P; Schwarz, U S

    2007-01-01

    We probe the dynamic strength of multiple biotin-streptavidin adhesion bonds under linear loading using the biomembrane force probe setup for dynamic force spectroscopy. Measured rupture force histograms are compared to results from a master equation model for the stochastic dynamics of bond rupture under load. This allows us to extract the distribution of the number of initially closed bonds. We also extract the molecular parameters of the adhesion bonds, in good agreement with earlier results from single bond experiments. Our analysis shows that the peaks in the measured histograms are not simple multiples of the single bond values, but follow from a superposition procedure which generates different peak positions.

  15. Dramatic robustness of a multiple delay dispersed interferometer to spectrograph errors: how mixing delays reduces or cancels wavelength drift

    Science.gov (United States)

    Erskine, David J.; Linder, E.; Wishnow, E.; Edelstein, J.; Sirk, M.; Muirhead, P.; Lloyd, J.; Kim, A.

    2016-08-01

    We describe demonstrations of remarkable robustness to instrumental noises by using a multiple delay externally dispersed interferometer (EDI) on stellar observations at the Hale telescope. Previous observatory EDI demonstrations used a single delay. The EDI (also called "TEDI") boosted the 2,700 resolution of the native TripleSpec NIR spectrograph (950-2450 nm) by as much as 10x to 27,000, using 7 overlapping delays up to 3 cm. We observed superb rejection of fixed pattern noises due to bad pixels, since the fringing signal responds only to changes in multiple exposures synchronous to the applied delay dithering. Remarkably, we observed a 20x reduction of reaction in the output spectrum to PSF shifts of the native spectrograph along the dispersion direction, using our standard processing. This allowed high resolution observations under conditions of severe and irregular PSF drift otherwise not possible without the interferometer. Furthermore, we recently discovered an improved method of weighting and mixing data between pairs of delays that can theoretically further reduce the net reaction to PSF drift to zero. We demonstrate a 350x reduction in reaction to a native PSF shift using a simple simulation. This technique could similarly reduce radial velocity noise for future EDI's that use two delays overlapped in delay space (or a single delay overlapping the native peak). Finally, we show an extremely high dynamic range EDI measurement of our ThAr lamp compared to a literature ThAr spectrum, observing weak features ( 0.001x height of nearest strong line) that occur between the major lines. Because of individuality of each reference lamp, accurate knowledge of its spectrum between the (unfortunately) sparse major lines is important for precision radial velocimetry.

  16. Unit physics performance of a mix model in Eulerian fluid computations

    Energy Technology Data Exchange (ETDEWEB)

    Vold, Erik [Los Alamos National Laboratory; Douglass, Rod [Los Alamos National Laboratory

    2011-01-25

    In this report, we evaluate the performance of a K-L drag-buoyancy mix model, described in a reference study by Dimonte-Tipton [1] hereafter denoted as [D-T]. The model was implemented in an Eulerian multi-material AMR code, and the results are discussed here for a series of unit physics tests. The tests were chosen to calibrate the model coefficients against empirical data, principally from RT (Rayleigh-Taylor) and RM (Richtmyer-Meshkov) experiments, and the present results are compared to experiments and to results reported in [D-T]. Results show the Eulerian implementation of the mix model agrees well with expectations for test problems in which there is no convective flow of the mass averaged fluid, i.e., in RT mix or in the decay of homogeneous isotropic turbulence (HIT). In RM shock-driven mix, the mix layer moves through the Eulerian computational grid, and there are differences with the previous results computed in a Lagrange frame [D-T]. The differences are attributed to the mass averaged fluid motion and examined in detail. Shock and re-shock mix are not well matched simultaneously. Results are also presented and discussed regarding model sensitivity to coefficient values and to initial conditions (IC), grid convergence, and the generation of atomically mixed volume fractions.

  17. On the formulation of the dynamic mixed subgrid-scale model

    NARCIS (Netherlands)

    Vreman, A.W.; Geurts, Bernardus J.; Kuerten, Johannes G.M.

    1994-01-01

    The dynamic mixed subgrid‐scale model of Zang et al. [Phys. Fluids A 5, 3186 (1993)] (DMM1) is modified with respect to the incorporation of the similarity model in order to remove a mathematical inconsistency. Compared to DMM1, the magnitude of the dynamic model coefficient of the modified model

  18. The Impact of Varied Discrimination Parameters on Mixed-Format Item Response Theory Model Selection

    Science.gov (United States)

    Whittaker, Tiffany A.; Chang, Wanchen; Dodd, Barbara G.

    2013-01-01

    Whittaker, Chang, and Dodd compared the performance of model selection criteria when selecting among mixed-format IRT models and found that the criteria did not perform adequately when selecting the more parameterized models. It was suggested by M. S. Johnson that the problems when selecting the more parameterized models may be because of the low…

  19. Neuroprotection in a novel mouse model of multiple sclerosis.

    Directory of Open Access Journals (Sweden)

    Katie Lidster

    Full Text Available Multiple sclerosis is an immune-mediated, demyelinating and neurodegenerative disease that currently lacks any neuroprotective treatments. Innovative neuroprotective trial designs are required to hasten the translational process of drug development. An ideal target to monitor the efficacy of strategies aimed at treating multiple sclerosis is the visual system, which is the most accessible part of the human central nervous system. A novel C57BL/6 mouse line was generated that expressed transgenes for a myelin oligodendrocyte glycoprotein-specific T cell receptor and a retinal ganglion cell restricted-Thy1 promoter-controlled cyan fluorescent protein. This model develops spontaneous or induced optic neuritis, in the absence of paralytic disease normally associated with most rodent autoimmune models of multiple sclerosis. Demyelination and neurodegeneration could be monitored longitudinally in the living animal using electrophysiology, visual sensitivity, confocal scanning laser ophthalmoscopy and optical coherence tomography all of which are relevant to human trials. This model offers many advantages, from a 3Rs, economic and scientific perspective, over classical experimental autoimmune encephalomyelitis models that are associated with substantial suffering of animals. Optic neuritis in this model led to inflammatory damage of axons in the optic nerve and subsequent loss of retinal ganglion cells in the retina. This was inhibited by the systemic administration of a sodium channel blocker (oxcarbazepine or intraocular treatment with siRNA targeting caspase-2. These novel approaches have relevance to the future treatment of neurodegeneration of MS, which has so far evaded treatment.

  20. The Brown Muck of $B^0$ and $B^0_s$ Mixing: Beyond the Standard Model

    Energy Technology Data Exchange (ETDEWEB)

    Bouchard, Christopher Michael [Univ. of Illinois, Urbana-Champaign, IL (United States)

    2011-01-01

    Standard Model contributions to neutral $B$ meson mixing begin at the one loop level where they are further suppressed by a combination of the GIM mechanism and Cabibbo suppression. This combination makes $B$ meson mixing a promising probe of new physics, where as yet undiscovered particles and/or interactions can participate in the virtual loops. Relating underlying interactions of the mixing process to experimental observation requires a precise calculation of the non-perturbative process of hadronization, characterized by hadronic mixing matrix elements. This thesis describes a calculation of the hadronic mixing matrix elements relevant to a large class of new physics models. The calculation is performed via lattice QCD using the MILC collaboration's gauge configurations with $2+1$ dynamical sea quarks.

  1. Model-independent analysis of B-$\\overline{B}$ mixing and CP violation in B decays

    CERN Document Server

    Goto, T; Okada, Y; Tanaka, M

    1996-01-01

    We present a framework to analyze effects of new physics beyond the standard model on B-\\bar B mixing and CP violation in B decays in a model-independent manner. Assuming that tree level decay amplitudes are dominated by the standard model ones, new physics contribution to the B-\\bar B mixing can be extracted from several measurements at B factories. Using this framework, we show the present constraint on new physics contribution to the B-\\bar B mixing, and illustrate constraints expected to be given by future experiments at B factories. We also point out a possibility that CP asymmetries in B\\rightarrow\\psi K_S, B\\rightarrow\\pi\\pi, and B\\rightarrow DK modes look consistent with the standard model, even if a large new physics contribution is present in the B-\\bar B mixing.

  2. Preconditioning of Nonlinear Mixed Effects Models for Stabilisation of Variance-Covariance Matrix Computations

    National Research Council Canada - National Science Library

    Aoki, Yasunori; Nordgren, Rikard; Hooker, Andrew C

    2016-01-01

    ... a bottleneck in the analysis. We propose a preconditioning method for non-linear mixed effects models used in pharmacometric analyses to stabilise the computation of the variance-covariance matrix...

  3. Experimental testing and modeling analysis of solute mixing at water distribution pipe junctions.

    Science.gov (United States)

    Shao, Yu; Jeffrey Yang, Y; Jiang, Lijie; Yu, Tingchao; Shen, Cheng

    2014-06-01

    Flow dynamics at a pipe junction controls particle trajectories, solute mixing and concentrations in downstream pipes. The effect can lead to different outcomes of water quality modeling and, hence, drinking water management in a distribution network. Here we have investigated solute mixing behavior in pipe junctions of five hydraulic types, for which flow distribution factors and analytical equations for network modeling are proposed. First, based on experiments, the degree of mixing at a cross is found to be a function of flow momentum ratio that defines a junction flow distribution pattern and the degree of departure from complete mixing. Corresponding analytical solutions are also validated using computational-fluid-dynamics (CFD) simulations. Second, the analytical mixing model is further extended to double-Tee junctions. Correspondingly the flow distribution factor is modified to account for hydraulic departure from a cross configuration. For a double-Tee(A) junction, CFD simulations show that the solute mixing depends on flow momentum ratio and connection pipe length, whereas the mixing at double-Tee(B) is well represented by two independent single-Tee junctions with a potential water stagnation zone in between. Notably, double-Tee junctions differ significantly from a cross in solute mixing and transport. However, it is noted that these pipe connections are widely, but incorrectly, simplified as cross junctions of assumed complete solute mixing in network skeletonization and water quality modeling. For the studied pipe junction types, analytical solutions are proposed to characterize the incomplete mixing and hence may allow better water quality simulation in a distribution network. Published by Elsevier Ltd.

  4. Multiplicative models for survival percentiles: estimating percentile ratios and multiplicative interaction in the metric of time

    Directory of Open Access Journals (Sweden)

    Andrea Bellavia

    2016-09-01

    Full Text Available Evaluating percentiles of survival was proposed as a possible method to analyze time-to-event outcomes. This approach sets the cumulative risk of the event of interest to a specific proportion and evaluates the time by which this proportion is attainedIn this context, exposure-outcome associations can be expressed in terms of differences in survival percentiles, expressing the difference in survival time by which different subgroups of the study population experience the same proportion of events, or in terms of percentile ratios, expressing the strength of the exposure in accelerating the time to the event. Additive models for conditional survival percentiles have been introduced, and their use to estimate multivariable-adjusted percentile differences, and additive interaction on the metric of time has been described. On the other hand, the percentile ratio has never been fully described, neither statistical methods have been presented for its models-based estimation. To bridge this gap, we provide a detailed presentation of the percentile ratio as a relative measure to assess exposure-outcome associations in the context of time-to-event analysis, discussing its interpretation and advantages. We then introduce multiplicative statistical models for conditional survival percentiles, and present their use in estimating percentile ratios and multiplicative interactions in the metric of time. The introduction of multiplicative models for survival percentiles allows researchers to apply this approach in a large variety of context where multivariable adjustment is required, enriching the potentials of the percentile approach as a flexible and valuable tool to evaluate time-to-event outcomes in medical research.

  5. Forecasting relativistic electron flux using dynamic multiple regression models

    Directory of Open Access Journals (Sweden)

    H.-L. Wei

    2011-02-01

    Full Text Available The forecast of high energy electron fluxes in the radiation belts is important because the exposure of modern spacecraft to high energy particles can result in significant damage to onboard systems. A comprehensive physical model of processes related to electron energisation that can be used for such a forecast has not yet been developed. In the present paper a systems identification approach is exploited to deduce a dynamic multiple regression model that can be used to predict the daily maximum of high energy electron fluxes at geosynchronous orbit from data. It is shown that the model developed provides reliable predictions.

  6. Modeling transcriptional networks in Drosophila development at multiple scales.

    Science.gov (United States)

    Wunderlich, Zeba; DePace, Angela H

    2011-12-01

    Quantitative models of developmental processes can provide insights at multiple scales. Ultimately, models may be particularly informative for key questions about network level behavior during development such as how does the system respond to environmental perturbation, or operate reliably in different genetic backgrounds? The transcriptional networks that pattern the Drosophila embryo have been the subject of numerous quantitative experimental studies coupled to modeling frameworks in recent years. In this review, we describe three studies that consider these networks at different levels of molecular detail and therefore result in different types of insights. We also discuss other developmental transcriptional networks operating in Drosophila, with the goal of highlighting what additional insights they may provide.

  7. A proposed experimental platform for measuring the properties of warm dense mixtures: Testing the applicability of the linear mixing model

    Science.gov (United States)

    Hawreliak, James

    2017-06-01

    This paper presents a proposed experimental technique for investigating the impact of chemical interactions in warm dense liquid mixtures. It uses experimental equation of state (EOS) measurements of warm dense liquid mixtures with different compositions to determine the deviation from the linear mixing model. Statistical mechanics is used to derive the EOS of a mixture with a constant pressure linear mixing term (Amagat's rule) and an interspecies interaction term. A ratio between the particle density of two different compositions of mixtures, K(P, T)i: ii, is defined. By comparing this ratio for a range of mixtures, the impact of interspecies interactions can be studied. Hydrodynamic simulations of mixtures with different carbon/hydrogen ratios are used to demonstrate the application of this proposed technique to multiple shock and ramp compression experiments. The limit of the pressure correction that can be measured due to interspecies interactions using this methodology is determined by the uncertainty in the density measurement.

  8. robustlmm: An R Package for Robust Estimation of Linear Mixed-Effects Models

    Directory of Open Access Journals (Sweden)

    Manuel Koller

    2016-12-01

    Full Text Available As any real-life data, data modeled by linear mixed-effects models often contain outliers or other contamination. Even little contamination can drive the classic estimates far away from what they would be without the contamination. At the same time, datasets that require mixed-effects modeling are often complex and large. This makes it difficult to spot contamination. Robust estimation methods aim to solve both problems: to provide estimates where contamination has only little influence and to detect and flag contamination. We introduce an R package, robustlmm, to robustly fit linear mixed-effects models. The package's functions and methods are designed to closely equal those offered by lme4, the R package that implements classic linear mixed-effects model estimation in R. The robust estimation method in robustlmm is based on the random effects contamination model and the central contamination model. Contamination can be detected at all levels of the data. The estimation method does not make any assumption on the data's grouping structure except that the model parameters are estimable. robustlmm supports hierarchical and non-hierarchical (e.g., crossed grouping structures. The robustness of the estimates and their asymptotic efficiency is fully controlled through the function interface. Individual parts (e.g., fixed effects and variance components can be tuned independently. In this tutorial, we show how to fit robust linear mixed-effects models using robustlmm, how to assess the model fit, how to detect outliers, and how to compare different fits.

  9. S-UTD-CH model in multiple diffractions

    Science.gov (United States)

    Baris Tabakcioglu, Mehmet

    2016-05-01

    The propagation of electromagnetic waves in empty space is an extremely simplified case. Thus, the significant question is how an electromagnetic wave propagates in an environment with obstacles such as buildings, trees or hills. Electromagnetic waves are partially reflected and partially diffracted from these obstacles. To predict the relative path loss of electromagnetic waves at the receiving position, many electromagnetic-wave propagation models have been proposed. These propagation models can be classified into models based on numerical integration and those based on ray tracing. Uniform theory of diffraction (UTD) and slope-UTD (S-UTD) models are ray-tracing-based propagation models and are briefly explained in this paper. In addition, detailed information is provided about the improved slope UTD model, which is called the S-UTD with Convex Hull (S-UTD-CH) model. The fundamentals of the S-UTD-CH model are the S-UTD, convex hull and Fresnel zone concept. In particular, the S-UTD-CH model can be applied to multiple diffraction scenarios in the transition region. Moreover, the S-UTD-CH model is considered an optimum model in terms of its accuracy and calculation or computation time. Widespread simulation results are provided to compare the models based on theoretical rays in terms of prediction accuracy and computation time. To compare these models, different operation frequencies and transmitting antenna heights are considered by using a high-performance computing technique.

  10. Short-term monitoring of the Spanish Government balance with mixed-frequencies models

    OpenAIRE

    Teresa Leal; Diego J. Pedregal; Javier J. Pérez

    2009-01-01

    We construct multivariate, state-space mixed-frequencies models for the main componentsof the Spanish General Government sector made up of blocks for each one of its subsectors: Central Government, Social Security and aggregate of Regional and Local government sectors. Each block is modelled through its total revenue and expenditure categories, and encompasses a number of indicators, depending on data availability. The mixed-frequencies approach is particularly relevant for the case of Spain,...

  11. Balancing mixed-model assembly lines: A computational evaluation of objectives to smoothen workload

    OpenAIRE

    Emde, Simon; Boysen, Nils; Scholl, Armin

    2010-01-01

    Abstract Mixed-model assembly lines are widely used in a range of production settings, such as the final assembly of the automotive and electronics industries, where they are applied to mass-produce standardized commodities. One of the greatest challenges when installing and reconfiguring these lines is the vast product variety modern mixed-model assembly lines have to cope with. Traditionally, product variety is bypassed during mid-term assembly line balancing by applying a joint ...

  12. A Weighted Multiobjective Optimization Method for Mixed-Model Assembly Line Problem

    OpenAIRE

    Şükran Şeker; Mesut Özgürler; Mehmet Tanyaş

    2013-01-01

    Mixed-model assembly line (MMAL) is a type of assembly line where several distinct models of a product are assembled. MMAL is applied in many industrial environments today because of its greater variety in demand. This paper considers the objective of minimizing the work overload (i.e., the line balancing problem) and station-to-station product flows. Generally, transportation time between stations are ignored in the literature. In this paper, Multiobjective Mixed-Integer Programming (MOMIP)...

  13. Mixed-Effects State Space Models for Analysis of Longitudinal Dynamic Systems

    OpenAIRE

    Liu, Dacheng; Lu, Tao; Niu, Xu-Feng; Wu, Hulin

    2010-01-01

    The rapid development of new biotechnologies allows us to deeply understand biomedical dynamic systems in more detail and at a cellular level. Many of the subject-specific biomedical systems can be described by a set of differential or difference equations which are similar to engineering dynamic systems. In this paper, motivated by HIV dynamic studies, we propose a class of mixed-effects state space models based on the longitudinal feature of dynamic systems. State space models with mixed-ef...

  14. Horizontal mixing coefficients for two-dimensional chemical models calculated from National Meteorological Center Data

    Science.gov (United States)

    Newman, P. A.; Schoeberl, M. R.; Plumb, R. A.

    1986-01-01

    Calculations of the two-dimensional, species-independent mixing coefficients for two-dimensional chemical models for the troposphere and stratosphere are performed using quasi-geostrophic potential vorticity fluxes and gradients from 4 years of National Meteorological Center data for the four seasons in both hemispheres. Results show that the horizontal mixing coefficient values for the winter lower stratosphere are broadly consistent with those currently employed in two-dimensional models, but the horizontal mixing coefficient values in the northern winter upper stratosphere are much larger than those usually used.

  15. Fermion masses and mixing in SU(5)×D4 × U(1) model

    Science.gov (United States)

    Ahl Laamara, R.; Loualidi, M. A.; Miskaoui, M.; Saidi, E. H.

    2017-03-01

    We propose a supersymmetric SU (5) ×Gf GUT model with flavor symmetry Gf =D4 × U (1) providing a good description of fermion masses and mixing. The model has twenty eight free parameters, eighteen are fixed to produce approximative experimental values of the physical parameters in the quark and charged lepton sectors. In the neutrino sector, the TBM matrix is generated at leading order through type I seesaw mechanism, and the deviation from TBM studied to reconcile with the phenomenological values of the mixing angles. Other features in the charged sector such as Georgi-Jarlskog relations and CKM mixing matrix are also studied.

  16. Mixed deterministic statistical modelling of regional ozone air pollution

    KAUST Repository

    Kalenderski, Stoitchko Dimitrov

    2011-03-17

    We develop a physically motivated statistical model for regional ozone air pollution by separating the ground-level pollutant concentration field into three components, namely: transport, local production and large-scale mean trend mostly dominated by emission rates. The model is novel in the field of environmental spatial statistics in that it is a combined deterministic-statistical model, which gives a new perspective to the modelling of air pollution. The model is presented in a Bayesian hierarchical formalism, and explicitly accounts for advection of pollutants, using the advection equation. We apply the model to a specific case of regional ozone pollution-the Lower Fraser valley of British Columbia, Canada. As a predictive tool, we demonstrate that the model vastly outperforms existing, simpler modelling approaches. Our study highlights the importance of simultaneously considering different aspects of an air pollution problem as well as taking into account the physical bases that govern the processes of interest. © 2011 John Wiley & Sons, Ltd..

  17. Biases in modeled surface snow BC mixing ratios in prescribed aerosol climate model runs

    OpenAIRE

    Doherty, S. J.; C. M. Bitz; M. G. Flanner

    2014-01-01

    A series of recent studies have used prescribed aerosol deposition flux fields in climate model runs to assess forcing by black carbon in snow. In these studies, the prescribed mass deposition flux of BC to surface snow is decoupled from the mass deposition flux of snow water to the surface. Here we use a series of offline calculations to show that this approach results, on average, in a~factor of about 1.5–2.5 high bias in annual-mean surface snow BC mixing ratios in three ...

  18. A PDP model of the simultaneous perception of multiple objects

    Science.gov (United States)

    Henderson, Cynthia M.; McClelland, James L.

    2011-06-01

    Illusory conjunctions in normal and simultanagnosic subjects are two instances where the visual features of multiple objects are incorrectly 'bound' together. A connectionist model explores how multiple objects could be perceived correctly in normal subjects given sufficient time, but could give rise to illusory conjunctions with damage or time pressure. In this model, perception of two objects benefits from lateral connections between hidden layers modelling aspects of the ventral and dorsal visual pathways. As with simultanagnosia, simulations of dorsal lesions impair multi-object recognition. In contrast, a large ventral lesion has minimal effect on dorsal functioning, akin to dissociations between simple object manipulation (retained in visual form agnosia and semantic dementia) and object discrimination (impaired in these disorders) [Hodges, J.R., Bozeat, S., Lambon Ralph, M.A., Patterson, K., and Spatt, J. (2000), 'The Role of Conceptual Knowledge: Evidence from Semantic Dementia', Brain, 123, 1913-1925; Milner, A.D., and Goodale, M.A. (2006), The Visual Brain in Action (2nd ed.), New York: Oxford]. It is hoped that the functioning of this model might suggest potential processes underlying dorsal and ventral contributions to the correct perception of multiple objects.

  19. A Multiple Reaction Modelling Framework for Microbial Electrochemical Technologies

    Science.gov (United States)

    Oyetunde, Tolutola; Sarma, Priyangshu M.; Ahmad, Farrukh; Rodríguez, Jorge

    2017-01-01

    A mathematical model for the theoretical evaluation of microbial electrochemical technologies (METs) is presented that incorporates a detailed physico-chemical framework, includes multiple reactions (both at the electrodes and in the bulk phase) and involves a variety of microbial functional groups. The model is applied to two theoretical case studies: (i) A microbial electrolysis cell (MEC) for continuous anodic volatile fatty acids (VFA) oxidation and cathodic VFA reduction to alcohols, for which the theoretical system response to changes in applied voltage and VFA feed ratio (anode-to-cathode) as well as membrane type are investigated. This case involves multiple parallel electrode reactions in both anode and cathode compartments; (ii) A microbial fuel cell (MFC) for cathodic perchlorate reduction, in which the theoretical impact of feed flow rates and concentrations on the overall system performance are investigated. This case involves multiple electrode reactions in series in the cathode compartment. The model structure captures interactions between important system variables based on first principles and provides a platform for the dynamic description of METs involving electrode reactions both in parallel and in series and in both MFC and MEC configurations. Such a theoretical modelling approach, largely based on first principles, appears promising in the development and testing of MET control and optimization strategies. PMID:28054959

  20. Are mixed explicit/implicit solvation models reliable for studying phosphate hydrolysis? A comparative study of continuum, explicit and mixed solvation models.

    Energy Technology Data Exchange (ETDEWEB)

    Kamerlin, Shina C. L.; Haranczyk, Maciej; Warshel, Arieh

    2009-05-01

    Phosphate hydrolysis is ubiquitous in biology. However, despite intensive research on this class of reactions, the precise nature of the reaction mechanism remains controversial. In this work, we have examined the hydrolysis of three homologous phosphate diesters. The solvation free energy was simulated by means of either an implicit solvation model (COSMO), hybrid quantum mechanical / molecular mechanical free energy perturbation (QM/MM-FEP) or a mixed solvation model in which N water molecules were explicitly included in the ab initio description of the reacting system (where N=1-3), with the remainder of the solvent being implicitly modelled as a continuum. Here, both COSMO and QM/MM-FEP reproduce Delta Gobs within an error of about 2kcal/mol. However, we demonstrate that in order to obtain any form of reliable results from a mixed model, it is essential to carefully select the explicit water molecules from short QM/MM runs that act as a model for the true infinite system. Additionally, the mixed models tend to be increasingly inaccurate the more explicit water molecules are placed into the system. Thus, our analysis indicates that this approach provides an unreliable way for modelling phosphate hydrolysis in solution.