Lutz's spontaneous sedimentation technique and the paleoparasitological analysis of sambaqui (shell mound) sediments

Science.gov (United States)

Camacho, Morgana; Pessanha, Thaíla; Leles, Daniela; Dutra, Juliana MF; Silva, Rosângela; de Souza, Sheila Mendonça; Araujo, Adauto

2013-01-01

Parasite findings in sambaquis (shell mounds) are scarce. Although the 121 shell mound samples were previously analysed in our laboratory, we only recently obtained the first positive results. In the sambaqui of Guapi, Rio de Janeiro, Brazil, paleoparasitological analysis was performed on sediment samples collected from various archaeological layers, including the superficial layer as a control. Eggs of Acanthocephala, Ascaridoidea and Heterakoidea were found in the archaeological layers. We applied various techniques and concluded that Lutz's spontaneous sedimentation technique is effective for concentrating parasite eggs in sambaqui soil for microscopic analysis. PMID:23579793

Mound-ACT*DE*CONSM feasibility study. Phase 2: Final report

International Nuclear Information System (INIS)

1994-12-01

A portion of the abandoned Miami-Erie Canal paralleling the Greater Miami River receives the runoff and storm-water discharge from Mound Laboratory. In 1969, a low-level plutonium leak contaminated sediment as far away as 1.5 mi from the Mound site along the old canal system. An estimated one million cubic feet of sediment requires remediation. The technology being evaluated for the remediation of the low-level plutonium-238 contamination of the sediment involves two processes: washing the sediments with ACT*DE*CON SM solution to dissolve the contaminant, followed by extraction of the solution and processing with the MAG*SEP SM process to concentrate the contaminant and allow reuse of the ACT*DE*CON SM solution. The processes are being optimized for pilot-scale and field demonstration. Phase 2 of the project primarily involved identification at the laboratory scale of the optimal ACT*DE*CON SM formulation, identification of the ion-exchanger and MAG*SEP SM particles, verification of the plutonium mobility in the treated soil, and evaluation of other process parameters according to a series of tasks

Solar-powered ventilation of African termite mounds.

Science.gov (United States)

Ocko, Samuel A; King, Hunter; Andreen, David; Bardunias, Paul; Turner, J Scott; Soar, Rupert; Mahadevan, L

2017-09-15

How termite mounds function to facilitate climate control is still only partially understood. Recent experimental evidence in the mounds of a single species, the south Asian termite Odontotermes obesus , suggests that the daily oscillations of radiant heating associated with diurnal insolation patterns drive convective flow within them. How general this mechanism is remains unknown. To probe this, we consider the mounds of the African termite Macrotermes michaelseni , which thrives in a very different environment. By directly measuring air velocities and temperatures within the mound, we see that the overall mechanisms and patterns involved are similar to that in the south Asian species. However, there are also some notable differences between the physiology of these mounds associated with the temporal variations in radiant heating patterns and CO 2 dynamics. Because of the difference between direct radiant heating driven by the position of the sun in African conditions, and the more shaded south Asian environments, we see changes in the convective flows in the two types of mounds. Furthermore, we also see that the south Asian mounds show a significant overturning of stratified gases, once a day, while the African mounds have a relatively uniform concentration of CO 2 Overall, our observations show that despite these differences, termite architectures can harness periodic solar heating to drive ventilation inside them in very different environments, functioning as an external lung, with clear implications for human engineering. © 2017. Published by The Company of Biologists Ltd.

Rubble Mound Breakwater Failure Modes

DEFF Research Database (Denmark)

Burcharth, H. F.; Z., Liu

1995-01-01

The RMBFM-Project (Rubble Mound Breakwater Failure Modes) is sponsored by the Directorate General XII of the Commission of the European Communities under the Contract MAS-CT92- 0042, with the objective of contributing to the development of rational methods for the design of rubble mound breakwate...

Feasibility of a Mound-designed transportable calorimeter

International Nuclear Information System (INIS)

Duff, M.F.; Fellers, C.L.

1979-01-01

The feasibility of operating a Mound twin resistance bridge calorimeter outside a temperature-controlled water bath was demonstrated. An existing calorimeter was retrofit with two additional jackets through which water was transferred from an external reservoir. Comparison of test results collected before and after the retrofit indicated that the calorimeter performance was not degraded by this modification. Similarly designed calorimeters have potential applications in laboratories where equipment space is limited for inspectors who are required to transport their assay instrumentation

Analysis of Rubble Mound Breakwaters

DEFF Research Database (Denmark)

Mettam, J.D.; Allsop, N.W.H.; Bonafous, P.

Working Group 12 was set up to consider the analysis of rubble mound breakwaters with a view to achieving a better understanding of safety aspects. The working group decided to develop the practical application of risk analysis in the design of rubble mound breakwaters by using partial coefficien...

Formation and Control of Self-Sealing High Permeability Groundwater Mounds in Impermeable Sediment: Implications for SUDS and Sustainable Pressure Mound Management

Directory of Open Access Journals (Sweden)

David D. J. Antia

2009-10-01

Full Text Available A groundwater mound (or pressure mound is defined as a volume of fluid dominated by viscous flow contained within a sediment volume where the dominant fluid flow is by Knudsen Diffusion. High permeability self-sealing groundwater mounds can be created as part of a sustainable urban drainage scheme (SUDS using infiltration devices. This study considers how they form, and models their expansion and growth as a function of infiltration device recharge. The mounds grow through lateral macropore propagation within a Dupuit envelope. Excess pressure relief is through propagating vertical surge shafts. These surge shafts can, when they intersect the ground surface result, in high volume overland flow. The study considers that the creation of self-sealing groundwater mounds in matrix supported (clayey sediments (intrinsic permeability = 10–8 to 10–30 m3 m–2 s–1 Pa–1 is a low cost, sustainable method which can be used to dispose of large volumes of storm runoff (<20→2,000 m3/24 hr storm/infiltration device and raise groundwater levels. However, the inappropriate location of pressure mounds can result in repeated seepage and ephemeral spring formation associated with substantial volumes of uncontrolled overland flow. The flow rate and flood volume associated with each overland flow event may be substantially larger than the associated recharge to the pressure mound. In some instances, the volume discharged as overland flow in a few hours may exceed the total storm water recharge to the groundwater mound over the previous three weeks. Macropore modeling is used within the context of a pressure mound poro-elastic fluid expulsion model in order to analyze this phenomena and determine (i how this phenomena can be used to extract large volumes of stored filtered storm water (at high flow rates from within a self-sealing high permeability pressure mound and (ii how self-sealing pressure mounds (created using storm water infiltration can be used to

Mound site environmental monitoring report for calendar year 1993

International Nuclear Information System (INIS)

1994-08-01

The purpose of this report is to inform the public about the impact of Mound operations on the population and the environment. Mound is a government-owned facility operated by EG ampersand G Mound Applied Technologies for the U.S. Department of Energy (DOE). This integrated production, development, and research site performs work in support of DOE's weapon and energy related programs, with emphasis on explosive, nuclear and energy technologies. The Mound Plant, named after the Miamisburg Indian Mound adjacent to the site, comprises 120 buildings on 124 hectares (306 acres) of land in Miamisburg, Ohio, approximately 16 km (10 mi) southwest of Dayton. The Great Miami River, which flows through the city of Miamisburg, dominates the landscape of the five-county region surrounding Mound. The river valley is highly industrialized. The rest of the region is predominately farm land dotted with light industry and small communities. The climate is moderate. The geologic record preserved in the rocks underlying Mound indicates that the area has been relatively stable since the beginning of the Paleozoic Era more than 500 million years ago. No buildings at Mound are located in a floodplain or in areas considered wetlands. Included in the report are the following: perspective on radiation; radionuclide releases from Mound; Dose limites; doses from Mound Operations; Results of the environmental Monitoring Program; Ground water monitoring program; environmental restoration program; quality assurance for environmental data

Temperature fluctuations inside savanna termite mounds: Do size and plant shade matter?

Science.gov (United States)

Ndlovu, M; Pérez-Rodríguez, A

2018-05-01

Mound building termites are key ecosystem engineers of subtropical savanna regions. Mounds allow termites to maintain suitable conditions for termite reproduction and food cultivation ('fungus gardens'). We studied how the internal mound temperature of Macrotermes natalensis, a dominant mound-building termite of the subtropical savanna of southern Africa, responds to a number of environmental variables. We used general additive mixed models (GAMM) to determine how external temperature, mound size (volume) and the amount of vegetation shade affects mound internal temperature over a 24-h period. Internal mound temperature varied daily following changes of the external temperature, although the range of variation was much smaller. Active termite mounds maintained a higher internal temperature than inactive ones, and mound activity reinforced the positive effect of mound size and moderated the negative effect of vegetation shade on internal temperatures. In turn, external temperature fluctuations equally affected active and inactive mounds. Large mounds maintained near optimal internal temperatures compared to smaller sized mounds. We therefore conclude that termite mound size is a stronger determinant of internal mound temperature stability compared to plant shade cover. Copyright © 2018 Elsevier Ltd. All rights reserved.

Aerodynamics of Ventilation in Termite Mounds

Science.gov (United States)

Bailoor, Shantanu; Yaghoobian, Neda; Turner, Scott; Mittal, Rajat

2017-11-01

Fungus-cultivating termites collectively build massive, complex mounds which are much larger than the size of an individual termite and effectively use natural wind and solar energy, as well as the energy generated by the colony's own metabolic activity to maintain the necessary environmental condition for the colony's survival. We seek to understand the aerodynamics of ventilation and thermoregulation of termite mounds through computational modeling. A simplified model accounting for key mound features, such as soil porosity and internal conduit network, is subjected to external draft conditions. The role of surface flow conditions in the generation of internal flow patterns and the ability of the mound to transport gases and heat from the nursery are examined. The understanding gained from our study could be used to guide sustainable bio-inspired passive HVAC system design, which could help optimize energy utilization in commercial and residential buildings. This research is supported by a seed Grant from the Environment, Energy Sustainability and Health Institute of the Johns Hopkins University.

Mound technology for isolation of decommissioned NPPs

International Nuclear Information System (INIS)

Korovkin, S.V.; Tutunina, E.V.

2012-01-01

The problem of NPPs' decommissioning calls for immediate attention. Today the most socially acceptable solution is green lawn, but due to the difficulty of this option, alternative solutions are being developed as well. The authors believe that the option is isolation of shut-down NPPs in-situ by covering them with layers of inert materials, resulting in the formation of a mound. In this case the reactor building itself becomes a repository that holds solid radioactive wastes generated over the time of unit operation. Spent fuel is to be shipped out of the site. A layer of inert materials several meters thick guarantees secure protection against ionising radiation and unauthorised access to the structures in isolation. The structures inside the mound are also inaccessible to ground waters. The green mound concept is considered as well as the mound backfilling technology which excludes collapse under the weight of inert materials that form the mound. It is pointed out that never-completed Voronezh nuclear heating plant is the optimal object for field-testing of the suggested technology [ru

Diurnal respiration of a termite mound

Science.gov (United States)

King, Hunter; Ocko, Samuel; Mahadevan, L.

2014-11-01

Many species of fungus-harvesting termites build largely empty, massive mound structures which protrude from the ground above their subterranean nests. It has been long proposed that the function of these mounds is to facilitate exchange of heat, humidity, and respiratory gases; this would give the colony a controlled climate in which to raise fungus and brood. However, the specific mechanism by which the mound achieves ventilation has remained a topic of debate, as direct measurement of internal air flows has remained difficult. By directly measuring these elusive, tiny flows with a custom sensor, we find that the mound architecture of the species Odontotermes obesus takes advantage of daily oscillations in ambient temperature to drive convection and gas transport. This contradicts previous theories, which point to internal metabolic heating and external wind as driving forces. Our result, a novel example of deriving useful work from a fluctuating scalar parameter, should contribute to better understanding insect swarm construction and possible development in passive human architecture, both of which have been spurred by previous research on termites. We acknowledge support from HFSP.

Termite Mounds Effects on Soil Properties in the Atlantic Forest Biome

Directory of Open Access Journals (Sweden)

Sandra Santana de Lima

2018-03-01

Full Text Available ABSTRACT Termites have peculiar activities in the soil, inducing significant changes in the soil properties. The objective of this study was to assess physical and chemical properties and soil organic matter to evaluate the effect of termite activity and termite mounds on the soil. Two toposequences were selected and divided in slope thirds (shoulder, backslope, and footslope. In each of these, four termite mounds were selected. Samples were taken from the soils and termite mounds (top, center, and base along with a variety of termites for identification. Analyses were carried out for physical, soil texture, and chemical properties, as well as for particle size and chemical fractioning of organic matter. The species Cornitermes cumulans was found in all mounds. Soil with termite mound presented higher clay content, acidity, and Al3+ content. Phosphorus contents differed considerably between mound material and soil. Sum of bases and cation exchange capacity of the soil were higher in mounds, and differed within the mounds, according to the sampling height. Total organic carbon and particulate carbon content were highest at the mound base. A marked disparity was observed between the contents of humic substances in the mounds and surrounding soil, with humin fraction differences in distinct topographic position. The high nutrient contents detected in the termite mounds confirm the importance of termites in concentrating nutrients.

Mound site environmental report for calendar year 1992

International Nuclear Information System (INIS)

Bauer, L.R.

1993-07-01

The purpose of this report is to inform the public about the impact of Mound operations on the population and the environment. Mound is a government-owned facility operated by EG ampersand G Mound Applied Technologies for the US Department of Energy (DOE). This integrated production, development, and research site performs work in support of DOE's weapon and energy related programs, with emphasis on explosive, nuclear and energy technologies

Shallow water mud-mounds of the Early Devonian Buchan Group, East Gippsland, Australia

Science.gov (United States)

Tosolini, A.-M. P.; Wallace, M. W.; Gallagher, S. J.

2012-12-01

The Lower Devonian Rocky Camp Member of the Murrindal Limestone, Buchan Group of southeastern Australia consists of a series of carbonate mud-mounds and smaller lagoonal bioherms. The Rocky Camp mound is the best exposed of the mud-mounds and has many characteristics in common with Waulsortian (Carboniferous) mounds. Detailed paleoecological and sedimentological studies indicate that the mound initially accumulated in the photic zone, in contrast to most of the previously recorded mud-mounds. Five facies are present in the mud-mound: a Dasycladacean Wackestone Facies at the base of the mound represents a moderate energy, shallow water bank environment within the photic zone. A Crinioidal Wackestone Facies was deposited in a laterally equivalent foreslope setting. A Poriferan-Crinoidal Mudstone Facies developed in a quiet, deeper water, lee-side mound setting associated with a minor relative sea-level rise. A Stromatoporoid-Coralline Packstone Facies in the upper part of the mound deposited in a high-energy, fair-weather wave base, mound-front environment. The crest of the mound is represented by a Crinoidal-Receptaculitid Packstone Facies indicative of a moderate-energy mound-top environment in the photic zone, sheltered by the mound-front stromatoporoid-coral communities. A mound flank facies is present on the southern side of the mound and this consists of high-energy crinoidal grainstones. Mud-mound deposition was terminated by a transgression that deposited dark gray, fossil-poor marl of the overlying Taravale Formation. The Rocky Camp mound appears to have originated in shallow water photic zone conditions and grew into a high-energy environment, with the mound being eventually colonized by corals and stromatoporoids. The indications of a high-energy environment during later mound growth (growth form of colonial metazoans and grainstones of the flanking facies) suggest that the micrite in the mound was autochthonous and implies the presence of an energy

Temporal variability in shell mound formation at Albatross Bay, northern Australia.

Directory of Open Access Journals (Sweden)

Simon J Holdaway

Full Text Available We report the results of 212 radiocarbon determinations from the archaeological excavation of 70 shell mound deposits in the Wathayn region of Albatross Bay, Australia. This is an intensive study of a closely co-located group of mounds within a geographically restricted area in a wider region where many more shell mounds have been reported. Valves from the bivalve Tegillarca granosa (Linnaeus, 1758 were dated. The dates obtained are used to calculate rates of accumulation for the shell mound deposits. These demonstrate highly variable rates of accumulation both within and between mounds. We assess these results in relation to likely mechanisms of shell deposition and show that rates of deposition are affected by time-dependent processes both during the accumulation of shell deposits and during their subsequent deformation. This complicates the interpretation of the rates at which shell mound deposits appear to have accumulated. At Wathayn, there is little temporal or spatial consistency in the rates at which mounds accumulated. Comparisons between the Wathayn results and those obtained from shell deposits elsewhere, both in the wider Albatross Bay region and worldwide, suggest the need for caution when deriving behavioural inferences from shell mound deposition rates, and the need for more comprehensive sampling of individual mounds and groups of mounds.

Termite mounds harness diurnal temperature oscillations for ventilation.

Science.gov (United States)

King, Hunter; Ocko, Samuel; Mahadevan, L

2015-09-15

Many species of millimetric fungus-harvesting termites collectively build uninhabited, massive mound structures enclosing a network of broad tunnels that protrude from the ground meters above their subterranean nests. It is widely accepted that the purpose of these mounds is to give the colony a controlled microclimate in which to raise fungus and brood by managing heat, humidity, and respiratory gas exchange. Although different hypotheses such as steady and fluctuating external wind and internal metabolic heating have been proposed for ventilating the mound, the absence of direct in situ measurement of internal air flows has precluded a definitive mechanism for this critical physiological function. By measuring diurnal variations in flow through the surface conduits of the mounds of the species Odontotermes obesus, we show that a simple combination of geometry, heterogeneous thermal mass, and porosity allows the mounds to use diurnal ambient temperature oscillations for ventilation. In particular, the thin outer flutelike conduits heat up rapidly during the day relative to the deeper chimneys, pushing air up the flutes and down the chimney in a closed convection cell, with the converse situation at night. These cyclic flows in the mound flush out CO2 from the nest and ventilate the colony, in an unusual example of deriving useful work from thermal oscillations.

Mound facility physical characterization

Energy Technology Data Exchange (ETDEWEB)

Tonne, W.R.; Alexander, B.M.; Cage, M.R.; Hase, E.H.; Schmidt, M.J.; Schneider, J.E.; Slusher, W.; Todd, J.E.

1993-12-01

The purpose of this report is to provide a baseline physical characterization of Mound`s facilities as of September 1993. The baseline characterizations are to be used in the development of long-term future use strategy development for the Mound site. This document describes the current missions and alternative future use scenarios for each building. Current mission descriptions cover facility capabilities, physical resources required to support operations, current safety envelope and current status of facilities. Future use scenarios identify potential alternative future uses, facility modifications required for likely use, facility modifications of other uses, changes to safety envelope for the likely use, cleanup criteria for each future use scenario, and disposition of surplus equipment. This Introductory Chapter includes an Executive Summary that contains narrative on the Functional Unit Material Condition, Current Facility Status, Listing of Buildings, Space Plans, Summary of Maintenance Program and Repair Backlog, Environmental Restoration, and Decontamination and Decommissioning Programs. Under Section B, Site Description, is a brief listing of the Site PS Development, as well as Current Utility Sources. Section C contains Site Assumptions. A Maintenance Program Overview, as well as Current Deficiencies, is contained within the Maintenance Program Chapter.

Geophysical Survey of Poverty Point UNESCO World Heritage Site Mound A

Science.gov (United States)

Frazer, W.; Bourke, J. R.; De Smet, T.; Nikulin, A.

2017-12-01

Poverty Point is an UNESCO World Heritage Site located in northern Louisiana, known for its six earthwork ridges and mounds of archeological significance. The largest of these earthworks and most significant feature on the site, Mound A is over 70 feet (21 m) high and 640 feet (200 m) long. To construct this mound, it would have taken about 16 million basket loads of dirt which weight approximately 50 lbs. each (23 kg). The current archeological theory describing the construction of Mound A states it was built in three months at most, with some suggesting construction times as short as a month, but beyond this not much else is known about Mound A or Poverty Point. The pace of Mound A's construction has been used as evidence to support the idea that there was a central leader directing its construction and that the population inhabiting the site was more socio-politically complex than previous hunter-gatherer populations in North America. Evidence of heterogeneity and stratigraphic layering, however, is an indication of a slow mound construction over centuries by a relatively egalitarian hunter-gather society. A greater understanding of the construction style and timeline for the construction of Mound A will lead to a greater understanding to the site, its people their lifestyles. Mound Builders have been known to cap mounds they have built if they were to be built in stages so if Mound A was built in stages it is likely capped with some more dense material than the dirt surrounding it. To better understand the construction history of Mound A we collected photogrammetry, seismic reflection, ground-penetrating radar, frequency-domain electromagnetic-induction, resistivity, and magnetometry data over the mound. The seismic data had a normal moveout correction, it was stacked and migrated. Additionally, with the application of quadcopter-based photogrammetry a three-dimensional digital model of Mound A was developed to display and assist in further understanding and

Iron microbial communities in Belgian Frasnian carbonate mounds

OpenAIRE

Boulvain, F.; De Ridder, C.; Mamet, B.; Preat, A.; Gillan, D.

2001-01-01

The Belgian Frasnian carbonate mounds occur in three stratigraphic levels in an overall backstepping succession. Petit-Mont and Arche Members form the famous red and grey “marble” exploited for ornamental stone since Roman times. The evolution and distribution of the facies in the mounds is thought to be associated with ecologic evolution and relative sea-level fluctuations. Iron oxides exist in five forms in the Frasnian mounds; four are undoubtedly endobiotic organized structures: (1) micro...

Are termite mounds biofilters for methane? - Challenges and new approaches to quantify methane oxidation in termite mounds

Science.gov (United States)

Nauer, Philipp A.; Hutley, Lindsay B.; Bristow, Mila; Arndt, Stefan K.

2015-04-01

Methane emissions from termites contribute around 3% to global methane in the atmosphere, although the total source estimate for termites is the most uncertain among all sources. In tropical regions, the relative source contribution of termites can be far higher due to the high biomass and relative importance of termites in plant decomposition. Past research focused on net emission measurements and their variability, but little is known about underlying processes governing these emissions. In particular, microbial oxidation of methane (MOX) within termite mounds has rarely been investigated. In well-studied ecosystems featuring an oxic matrix above an anoxic methane-producing habitat (e.g. landfills or sediments), the fraction of oxidized methane (fox) can reach up to 90% of gross production. However, conventional mass-balance approaches to apportion production and consumption processes can be challenging to apply in the complex-structured and almost inaccessible environment of a termite mound. In effect, all field-based data on termite-mound MOX is based on one study that measured isotopic shifts in produced and emitted methane. In this study a closed-system isotope fractionation model was applied and estimated fox ranged from 10% to almost 100%. However, it is shown here that by applying an open-system isotope-pool model, the measured isotopic shifts can also be explained by physical transport of methane alone. Different field-based methods to quantify MOX in termite mounds are proposed which do not rely on assumptions of physical gas transport. A simple approach is the use of specific inhibitors for MOX, e.g. difluoromethane (CH2F2), combined with chamber-based flux measurements before and after their application. Data is presented on the suitability of different inhibitors and first results of their application in the field. Alternatively, gas-tracer methods allow the quantification of methane oxidation and reaction kinetics without knowledge of physical gas

Facies architecture and diagenesis of Belgian Late Frasnian carbonate mounds

OpenAIRE

Boulvain, Frédéric

2001-01-01

Late Frasnian Petit-Mont Member carbonate mounds occur in the southern pail of the Dinant Synclinorium and in the Philippeville Anticline (SW Belgium). These mounds are 30 to 80 m thick and 100 to 250 m in diameter. They are embedded in shale, nodular shale and argillaceous limestone. Based on facies mapping of 14 buildups and related off-mound sediments, these mounds typically started from below the photic and storm wave base zones and builtup into shallow water environments. Above an argill...

Simulation of Groundwater Mounding Beneath Hypothetical Stormwater Infiltration Basins

Science.gov (United States)

Carleton, Glen B.

2010-01-01

Groundwater mounding occurs beneath stormwater management structures designed to infiltrate stormwater runoff. Concentrating recharge in a small area can cause groundwater mounding that affects the basements of nearby homes and other structures. Methods for quantitatively predicting the height and extent of groundwater mounding beneath and near stormwater Finite-difference groundwater-flow simulations of infiltration from hypothetical stormwater infiltration structures (which are typically constructed as basins or dry wells) were done for 10-acre and 1-acre developments. Aquifer and stormwater-runoff characteristics in the model were changed to determine which factors are most likely to have the greatest effect on simulating the maximum height and maximum extent of groundwater mounding. Aquifer characteristics that were changed include soil permeability, aquifer thickness, and specific yield. Stormwater-runoff variables that were changed include magnitude of design storm, percentage of impervious area, infiltration-structure depth (maximum depth of standing water), and infiltration-basin shape. Values used for all variables are representative of typical physical conditions and stormwater management designs in New Jersey but do not include all possible values. Results are considered to be a representative, but not all-inclusive, subset of likely results. Maximum heights of simulated groundwater mounds beneath stormwater infiltration structures are the most sensitive to (show the greatest change with changes to) soil permeability. The maximum height of the groundwater mound is higher when values of soil permeability, aquifer thickness, or specific yield are decreased or when basin depth is increased or the basin shape is square (and values of other variables are held constant). Changing soil permeability, aquifer thickness, specific yield, infiltration-structure depth, or infiltration-structure shape does not change the volume of water infiltrated, it changes the

Environmental assessment for Mound Plant decontamination and decommissioning projects, Mound Plant, Miamisburg, Ohio

International Nuclear Information System (INIS)

1995-05-01

The U.S. Department of Energy (DOE) has prepared an Environmental Assessment (EA) for seven decontamination and decommissioning (D ampersand D) projects at the Mound Plant in Miamisburg, Ohio, that have not been previously addressed in the Final Environmental Impact Statement for the Mound Facility (June 1979). Based on the information presented in the EA, the DOE has determined that the proposed action is not a major Federal action significantly affecting the quality of the human environment within the meaning of the National Environmental Policy Act (NEPA) of 1969. Therefore, the preparation of an Environmental Impact Statement (EIS) is not required and the Department is issuing this Finding of No Significant Impact (FONSI)

Influence of soil pedological properties on termite mound stability

OpenAIRE

Jouquet, Pascal; Guilleux, N.; Caner, L.; Chintakunta, S.; Ameline, M.; Shanbhag, R. R.

2016-01-01

This study investigated the influence of soil properties on the density and shape of epigeous fungus-growing termite nests in a dry deciduous forest in Karnataka, India. In this environment, Odontotermes obesus produces cathedral shaped mounds. Their density, shape (height and volume) and soil physicochemical properties were analyzed in ferralsol and vertisol environments. No significant difference was observed in O. obesus mound density (n = 2.7 mound ha(-1) on average in the vertisol and fe...

IODP Expedition 307 Drills Cold-Water Coral Mound Along the Irish Continental Margin

Directory of Open Access Journals (Sweden)

Trevor Williams

2006-03-01

Full Text Available Introduction Over the past decade, oceanographic and geophysical surveys along the slope of the Porcupine Seabight off the southwestern continental margin of Ireland have identified upwards of a thousand enigmatic mound-like structures (Figs. 1 and 2. The mounds of the Porcupine Seabight rise from the seafl oor in water depths of 600–900 m and formimpressive conical bodies several kilometers wide and up to 200 m high. Although a few mounds such as Thérèse Mound and Galway Mound are covered by a thriving thicket of coldwater corals, most mound tops and fl anks are covered by dead coral rubble or are entirely buried by sediment (De Mol et al., 2002; Fig. 2, Beyer et al., 2003. Lophelia pertusa (Fig.3 and Madrepora oculata are the most prominent cold-water corals growing without photosynthetic symbionts. The widespread discovery of large and numerous coral-bearing banks and the association of these corals with the mounds have generated signifi cant interest as to the composition, origin and development of these mound structures.Challenger Mound, in the Belgica mound province, has an elongated shape oriented along a north-northeast to south-southwest axis and ispartially buried under Pleistocene drift sediments. In high-resolution seismic profiles the mounds appear to root on an erosion surface (van Rooij et al., 2003. During IODP Expedition307 the Challenger Mound in the Porcupine Seabight was drilled with the goal of unveiling the origin and depositional processes withinthese intriguing sedimentary structures. Challenger Mound, unlike its near neighbors the Thérèse and Galway mounds, has little to no livecoral coverage and, therefore, was chosen as the main target for drilling activities, so that no living ecosystem would be disturbed.

Soil Physical and Chemical Properties in Epigeal Termite Mounds in Pastures

Directory of Open Access Journals (Sweden)

Sandra Santana de Lima

2018-03-01

Full Text Available ABSTRACT We characterized soil physical and chemical properties and soil organic matter in epigeal termite mounds in pastures to evaluate the changes promoted by termites in comparison to an adjacent area. We selected seven active epigeal termite mounds in the municipality of Seropédica, state of Rio de Janeiro, Brazil. Soil samples were collected from top, center and base positions of each mound, at 0.50 and 1.50 m distance from the base of the mound. We identified individuals of the genus Embiratermes, Velocitermes, and Orthognathotermes. The humin fraction predominated over the humic and fulvic acid fractions both in mounds and adjacent soil. The amount of organic matter and the mineral fractions (mineral-associated organic carbon - MOC varied among builder species. The studied chemical attributes point to a higher concentration of nutrients in the mounds than in the adjacent soil.

Environmental survey preliminary report, Mound Plant, Miamisburg, Ohio

Energy Technology Data Exchange (ETDEWEB)

1987-03-01

This report presents the preliminary findings from the first phase of the Environmental Survey of the United States Department of Energy (DOE) Mound Plant, conducted August 18 through 29, 1986. The objective of the Survey is to identify environmental problems and areas of environmental risk associated with the Mound Plant. The Survey covers all environmental media and all areas of environmental regulation. It is being performed in accordance with the DOE Environmental Survey Manual. The on-site phase of the Survey involves the review of existing site environmental data, observations of the operations carried on at the Mound Plant, and interviews with site personnel. The Survey found no environmental problems at the Mound Plant that represent an immediate threat to human life. The environmental problems identified at the Mound Plant by the Survey confirm that the site is confronted with a number of environmental problems which are by and large a legacy from past practices at a time when environmental problems were less well understood. Theses problems vary in terms of their magnitude and risk, as described in this report. Although the sampling and analysis performed by the Mound Plant Survey will assist in further identifying environmental problems at the site, a complete understanding of the significance of some of the environmental problems identified requires a level of study and characterization that is beyond the scope of the Survey. Actions currently under way or planned at the site, particularly the Phase II activities of the Comprehensive Environmental Analysis and Response Program (CEARP) as developed and implemented by the Albuquerque Operations Office, will contribute toward meeting this requirement. 85 refs., 24 figs., 20 tabs.

Methane fluxes from the mound-building termite species of North Australian savannas

Science.gov (United States)

Jamali, H.; Livesely, S. J.; Arndt, S. K.; Dawes-Gromadzki, T.; Cook, G. D.; Hutley, L.

2009-04-01

556.2±254.9 µg CH4-C/m3/h in dry season. While mounds of M. nervosus had diel variations in methane fluxes in the field, no diel variation was observed when incubated under constant laboratory temperature for 24 hours. This demonstrates that diel variation was not due to the movement of termites in and out of the mounds, but was due to temperature variation. Methane flux varied significantly according to termite species and at seasonal and diel time scales which, if not accounted for, could result in large under- or over-estimation of methane emissions from termites when flux data are extrapolated to landscape scales.

The Porcupine Bank Canyon coral mounds: oceanographic and topographic steering of deep-water carbonate mound development and associated phosphatic deposition

Science.gov (United States)

Mazzini, A.; Akhmetzhanov, A.; Monteys, X.; Ivanov, M.

2012-06-01

The head of a canyon system extending along the western Porcupine Bank (west of Ireland) and which accommodates a large field of giant carbonate mounds was investigated during two cruises (INSS 2000 and TTR-13). Multibeam and sidescan sonar data (600-1,150 m water depth) suggest that the pre-existing seabed topography acts as a significant factor controlling mound distribution and shape. The mounds are concentrated along the edges of the canyon or are associated with a complex fault system traced around the canyon head, comprising escarpments up to 60 m high and several km long. The sampling for geochemical and petrographic analysis of numerous types of authigenic deposits was guided by sidescan sonar and video recordings. Calcite-cemented biogenic rubble was observed at the top and on the flanks of the carbonate mounds, being associated with both living and dead corals ( Lophelia pertusa, Madrepora oculata and occasional Desmophyllum cristagalli). This can plausibly be explained by dissolution of coral debris facilitated by strong currents along the mound tops and flanks. In turn, the dissolved carbon is recycled and precipitated as interstitial micrite. Calcite, dolomite and phosphatic hardgrounds were identified in samples from the escarpment framing the eastern part of the survey area. The laterally extensive phosphatic hardgrounds represent a novel discovery in the region, supplying hard substrata for the establishment of new coral colonies. Based on existing knowledge of regional oceanographic conditions, complemented with new CTD measurements, it is suggested that water column stratification, enhanced bottom currents, and upwelling facilitate the deposition of organic matter, followed by phosphatisation leading to the formation of phosphate-glauconite deposits. The occurrence of strong bottom currents was confirmed by means of video observations combined with acoustic and sampling data, providing circumstantial evidence of fine- to medium-grained sand

Rainfall and soil properties influence termite mound abundance and height: A case study with Odontotermes obesus (Macrotermitinae) mounds in the Indian Western Ghats forests

OpenAIRE

Kabbaj, Meyssoun; Sundararaj, Ramachandran; Jouquet, Pascal

2017-01-01

Several fungus-growing termite species build mounds, or termitaria, that are conspicuous features of African and Asian landscapes. Studies of the genus Macrotermes in Africa have established that their mounds provide an environment buffered against extremes of temperature and humidity, as well as protection from predators, and are correspondingly modified in composition. However, no studies are available in the specific context of the Asian continent where termite mounds are also abundant. He...

Rainfall and soil properties influence termite mound abundance and height : a case study with Odontotermes obesus (Macrotermitinae) mounds in the Indian Western Ghats forests

OpenAIRE

Shanbhag, R. R.; Kabbaj, M.; Sundararaj, R.; Jouquet, Pascal

2017-01-01

Several fungus-growing termite species build mounds, or termitaria, that are conspicuous features of African and Asian landscapes. Studies of the genus Macrotermes in Africa have established that their mounds provide an environment buffered against extremes of temperature and humidity, as well as protection from predators, and are correspondingly modified in composition. However, no studies are available in the specific context of the Asian continent where termite mounds are also abundant. He...

Contact area calculation between elastic solids bounded by mound rough surfaces

NARCIS (Netherlands)

Palasantzas, G

In this work, we investigate the influence of mound roughness on the contact area between elastic bodies. The mound roughness is described by the r.m.s. roughness amplitude w, the average mound separation Lambda, and the system correlation length xi. In general, the real contact area has a complex

Nutrient dynamics and plant assemblages of Macrotermes falciger mounds in a savanna ecosystem

Science.gov (United States)

Muvengwi, Justice; Ndagurwa, Hilton G. T.; Nyenda, Tatenda; Mbiba, Monicah

2016-10-01

Termites through mound construction and foraging activities contribute significantly to carbon and nutrient fluxes in nutrient-poor savannas. Despite this recognition, studies on the influence of termite mounds on carbon and nitrogen dynamics in sub-tropical savannas are limited. In this regard, we examined soil nutrient concentrations, organic carbon and nitrogen mineralization in incubation experiments in mounds of Macrotermes falciger and surrounding soils of sub-tropical savanna, northeast Zimbabwe. We also addressed whether termite mounds altered the plant community and if effects were similar across functional groups i.e. grasses, forbs or woody plants. Mound soils had significantly higher silt and clay content, pH and concentrations of calcium (Ca), magnesium (Mg), potassium (K), organic carbon (C), ammonium (NH4+) and nitrate (NO3-) than surrounding soils, with marginal differences in phosphorus (P) and sodium (Na) between mounds and matrix soils. Nutrient enrichment increased by a factor ranging from 1.5 for C, 4.9 for Mg up to 10.3 for Ca. Although C mineralization, nitrification and nitrification fraction were similar between mounds and matrix soils, nitrogen mineralization was elevated on mounds relative to surrounding matrix soils. As a result, termite mounds supported unique plant communities rich and abundant in woody species but less diverse in grasses and forbs than the surrounding savanna matrix in response to mound-induced shifts in soil parameters specifically increased clay content, drainage and water availability, nutrient status and base cation (mainly Ca, Mg and Na) concentration. In conclusion, by altering soil properties such as texture, moisture content and nutrient status, termite mounds can alter the structure and composition of sub-tropical savanna plant communities, and these results are consistent with findings in other savanna systems suggesting that increase in soil clay content, nutrient status and associated changes in the plant

Radiocarbon dating of large termite mounds of the miombo woodland of Katanga, DR Congo

Science.gov (United States)

Erens, Hans; Boudin, Mathieu; Mees, Florias; Dumon, Mathijs; Mujinya, Basile; Van Strydonck, Mark; Baert, Geert; Boeckx, Pascal; Van Ranst, Eric

2015-04-01

The miombo woodlands of South Katanga (D.R. Congo) are characterized by a high spatial density of large conic termite mounds built by Macrotermes falciger (3 to 5 ha-1, ~5 m high, ~15 m in diameter). The time it takes for these mounds to attain this size is still largely unknown. In this study, the age of four of these mounds is determined by 14C-dating the acid-insoluble organic carbon fraction of samples taken along the central vertical axis of two active and two abandoned mounds. The age sequence in the active mounds is erratic, but the results for the abandoned mounds show a logical increase of 14C-age with depth. The ages measured at 50 cm above ground level were 2335 - 2119 cal yr BP for the large abandoned mound (630 cm high), and 796 - 684 cal yr BP for the small abandoned mound (320 cm high). Cold-water-extractable organic carbon (CWEOC) measurements combined with spectroscopic analysis revealed that the lower parts of the active mounds may have been contaminated with recent carbon that leached from the active nest. Nonetheless, this method appears to provide reliable age estimates of large, abandoned termite mounds, which are older than previously estimated. Furthermore, historical mound growth rates seem to correspond to past temperature changes, suggesting a relation between past environmental conditions and mound occupancy. Keywords : 14C, water-extractable carbon, low-temperature combustion

Use of termite mounds in geochemical exploration in North Ethiopia [rapid communication

Science.gov (United States)

Kebede, Fassil

2004-09-01

The geochemistry of the termite mounds was studied in lower Giba River basin, Kolla Tambien district, northern Ethiopia to show that they are useful in searching for metals. Specimens from the termite mounds and parent materials were collected to quantify gold, silver, copper, zinc, cobalt, manganese, iron and nickel. The results of the geochemical analysis of the samples indicated that these metals exist both in the termite mound and the parent material in the surrounding area. Correlation analysis shows that termite mounds and the parent materials are positively correlated for gold ( r = 0.75∗), copper ( r = 0.77∗), silver ( r = 0.56∗) and manganese ( r = 0.72). This positive correlation leads to the conclusion that there is a direct relation between the concentration of metals in termite mound and the parent rocks. Termite mounds can therefore be used as tools in exploring for these metals.

Characteristics and origin of Earth-mounds on the Eastern Snake River Plain, Idaho

International Nuclear Information System (INIS)

Tullis, J.A.

1995-09-01

Earth-mounds are common features on the Eastern Snake River Plain, Idaho. The mounds are typically round or oval in plan view, <0.5 m in height, and from 8 to 14 m in diameter. They are found on flat and sloped surfaces, and appear less frequently in lowland areas. The mounds have formed on deposits of multiple sedimentary environments. Those studied included alluvial gravel terraces along the Big Lost River (late Pleistocene/early Holocene age), alluvial fan segments on the flanks of the Lost River Range (Bull Lake and Pinedale age equivalents), and loess/slopewash sediments overlying basalt flows. Backhoe trenches were dug to allow characterization of stratigraphy and soil development. Each mound has features unique to the depositional and pedogenic history of the site; however, there are common elements to all mounds that are linked to the history of mound formation. Each mound has a open-quotes floorclose quotes of a sediment or basement rock of significantly different hydraulic conductivity than the overlying sediment. These paleosurfaces are overlain by finer-grained sediments, typically loess or flood-overbank deposits. Mounds formed in environments where a sufficient thickness of fine-grained sediment held pore water in a system open to the migration to a freezing front. Heaving of the sediment occurred by the growth of ice lenses. Mound formation occurred at the end of the Late Pleistocene or early in the Holocene, and was followed by pedogenesis. Soils in the mounds were subsequently altered by bioturbation, buried by eolian deposition, and eroded by slopewash runoff. These secondary processes played a significant role in maintaining or increasing the mound/intermound relief

Characteristics and origin of Earth-mounds on the Eastern Snake River Plain, Idaho

Energy Technology Data Exchange (ETDEWEB)

Tullis, J.A.

1995-09-01

Earth-mounds are common features on the Eastern Snake River Plain, Idaho. The mounds are typically round or oval in plan view, <0.5 m in height, and from 8 to 14 m in diameter. They are found on flat and sloped surfaces, and appear less frequently in lowland areas. The mounds have formed on deposits of multiple sedimentary environments. Those studied included alluvial gravel terraces along the Big Lost River (late Pleistocene/early Holocene age), alluvial fan segments on the flanks of the Lost River Range (Bull Lake and Pinedale age equivalents), and loess/slopewash sediments overlying basalt flows. Backhoe trenches were dug to allow characterization of stratigraphy and soil development. Each mound has features unique to the depositional and pedogenic history of the site; however, there are common elements to all mounds that are linked to the history of mound formation. Each mound has a {open_quotes}floor{close_quotes} of a sediment or basement rock of significantly different hydraulic conductivity than the overlying sediment. These paleosurfaces are overlain by finer-grained sediments, typically loess or flood-overbank deposits. Mounds formed in environments where a sufficient thickness of fine-grained sediment held pore water in a system open to the migration to a freezing front. Heaving of the sediment occurred by the growth of ice lenses. Mound formation occurred at the end of the Late Pleistocene or early in the Holocene, and was followed by pedogenesis. Soils in the mounds were subsequently altered by bioturbation, buried by eolian deposition, and eroded by slopewash runoff. These secondary processes played a significant role in maintaining or increasing the mound/intermound relief.

Independent technical review of the Mound Plant

Energy Technology Data Exchange (ETDEWEB)

1994-06-01

This report documents an Independent Technical Review (ITR) of the facilities, organizations, plans, and activities required to transition particular elements of the Mound Plant from Defense Program (DP) funded operation as appropriate either to community developed reuse or safe deactivation leading to decontamination and decommissioning (D&D). The review was conducted at the request of the Dr. Willis Bixby, Deputy Assistant Secretary, U.S. Department of Energy EM-60, Office of Facility Transition and Management and is a consensus of the nine member ITR Team. Information for the review was drawn from documents provided to the ITR Team by the Miamisburg Area Office (MB) of the DOE, EG&G, the City of Miamisburg, and others; and from presentations, discussions, interviews, and facility inspections at the Mound Plant during the weeks of March 14 and March 28, 1994. During the week of April 25, 1994, the ITR Team met at Los Alamos, New Mexico to develop consensus recommendations. A presentation of the core recommendations was made at the Mound Plant on May 5, 1994. This is an independent assessment of information available to, and used by, the Mound Plant personnel. Repetition of the information is not meant to imply discovery by the ITR Team. Team members, however, acting as independent reviewers, frequently assess the information from a perspective that differs significantly from that of the Mound Plant personnel. The report is based on information obtained and conditions observed during the March 1994 review interval. The ITR process and normal site work often initiate rapid, beneficial changes in understanding and organization immediately following the review. These changes frequently alter conditions observed during the review, but the report does not address changes subsequent to the review interval.

Plant Mounds as Concentration and Stabilization Agents for Actinide Soil Contaminants in Nevada

Energy Technology Data Exchange (ETDEWEB)

D.S. Shafer; J. Gommes

2009-02-03

Plant mounds or blow-sand mounds are accumulations of soil particles and plant debris around the base of shrubs and are common features in deserts in the southwestern United States. An important factor in their formation is that shrubs create surface roughness that causes wind-suspended particles to be deposited and resist further suspension. Shrub mounds occur in some plant communities on the Nevada Test Site, the Nevada Test and Training Range (NTTR), and Tonopah Test Range (TTR), including areas of surface soil contamination from past nuclear testing. In the 1970s as part of early studies to understand properties of actinides in the environment, the Nevada Applied Ecology Group (NAEG) examined the accumulation of isotopes of Pu, 241Am, and U in plant mounds at safety experiment and storage-transportation test sites of nuclear devices. Although aerial concentrations of these contaminants were highest in the intershrub or desert pavement areas, the concentration in mounds were higher than in equal volumes of intershrub or desert pavement soil. The NAEG studies found the ratio of contaminant concentration of actinides in soil to be greater (1.6 to 2.0) in shrub mounds than in the surrounding areas of desert pavement. At Project 57 on the NTTR, 17 percent of the area was covered in mounds while at Clean Slate III on the TTR, 32 percent of the area was covered in mounds. If equivalent volumes of contaminated soil were compared between mounds and desert pavement areas at these sites, then the former might contain as much as 34 and 62 percent of the contaminant inventory, respectively. Not accounting for radionuclides associated with shrub mounds would cause the inventory of contaminants and potential exposure to be underestimated. In addition, preservation of shrub mounds could be important part of long-term stewardship if these sites are closed by fencing and posting with administrative controls.

Food preferences and mound-building behaviour of the mound-building mice Mus spicilegus

Science.gov (United States)

Hölzl, Michaela; Krištofík, Ján; Darolová, Alžbeta; Hoi, Herbert

2011-10-01

Optimal foraging strategies and food choice are influenced by various factors, e.g. availability, size and caloric content of the food type and predation risk. However, food choice criteria may change when food is not eaten immediately but has to be carried to a storage site for later use. For example, handling time in terms of harvesting and transport time should be optimized, particularly when the risk of predation is high. Thus, it is not clear whether food selected by hoarding animals reflects their food preference due to intrinsic features of the food type, e.g. size, caloric or lipid content, or whether the food type selected is a compromise that also considers the handling time required for harvesting and transport. We investigate this question in relation to food hoarding behaviour in mound-building mice. In autumn, mound-building mice Mus spicilegus collect seeds and other plant material and cover it with soil. Such above-ground storage is quite unusual for rodents. Here, we investigated whether there is a relationship between the seed species preferred as building materials and those preferred for food. We conducted a seed preference test using three most collected weed species for mound building. Controlling factors like food availability or predation risk, mice prefer Setaria spp. as food, although Amaranthus spp. and Chenopodium spp. were preferentially harvested and stored. By including the availability of the three species, our experimental results were confirmed, namely, a clear preference for Setaria spp. Also, handling time and seed size revealed to influence plant choice.

Morphology and spatial patterns of Macrotermes mounds in the SE Katanga, D.R. Congo

Science.gov (United States)

Bazirake Mujinya, Basile; Mees, Florias; Erens, Hans; Baert, Geert; Van Ranst, Eric

2015-04-01

The spatial distribution patterns and morphological characteristics of Macrotermes falciger mounds were investigated in the Lubumbashi area, D.R. Congo. Examination of the spatial patterns of M. falciger mounds on high resolution satellite images reveals a mean areal number density of 2.9 ± 0.4 mounds ha-1. The high relative number of inactive mounds in the region, along with their regular distribution pattern, suggests that current termite mound occurrences are largely palaeostructures. Mound positions in the habitat are consistent with intraspecific competition rather than soil and substrate characteristics as controlling factor. Detailed morphological description of five deep termite-mound profiles (~7 m height/depth) shows that carbonate pedofeatures are present in all studied profiles, in contrast to the control soils. They mainly occur in the form of soft powdery masses, nodules and coatings on ped faces, all clearly pedogenic. Carbonate coatings occur mainly between 1 m above the soil surface and 1 m below that level in all mound profiles. Carbonate nodules do show a different distribution pattern at each site. Furthermore, when the studied profiles are considered to represent a toposequence, the stone layer occurs at greater depth in topographically low areas compared to crest and slope positions, which is mainly conditioned by erosion. The clay content of epigeal mounds increases from the summit to the toe slope, which can be largely related to differences in parent material. The Mn-Fe oxide concentrations occurring in all studied termite mound profiles reflect a seasonally high perched water table beneath the mound, which is more pronounced at the lower slope positions.

Transition and Closeout of the Former DOE Mound Plant Site: Lessons Learned

International Nuclear Information System (INIS)

Carpenter, C. P.; Marks, M. L.; Smiley, S.L.; Gallaher, D. M.

2006-01-01

The U.S. Department of Energy's (DOE's) Office of Environmental Management (EM) manages the Miamisburg Closure Project (MCP) by cleaning up the Mound site, located in Miamisburg, Ohio, to specific environmental standards, conveying all excess land parcels to the Miamisburg Mound Community Improvement Corporation, and transferring all continuing DOE post-closure responsibilities to the Office of Legacy Management (LM). Presently, the EM cleanup contract of the Mound site with CH2M Hill Mound Inc. is scheduled for completion on March 31, 2006. LM manages the Mound transition efforts and also post-closure responsibilities at other DOE sites via a contract with the S.M. Stoller Corporation. The programmatic transfer from EM to LM is scheduled to take place on October 1, 2006. The transition of the Mound site has required substantial integration and coordination between the EM and LM. Several project management principles have been implemented to help facilitate the transfer of programmatic responsibility. As a result, several lessons learned have been identified to help streamline and improve integration and coordination of the transfer process. Lessons learned from the Mound site transition project are considered a work in progress and have been summarized according to a work breakdown structure for specific functional areas in the transition schedule. The functional areas include program management, environmental, records management, information technology, property management, stakeholder and regulatory relations, procurement, worker pension and benefits, and project closeout. Specific improvements or best practices have been recognized and documented by the Mound transition team. The Mound site is one of three major cleanup sites within the EM organization scheduled for completion in 2006. EM, EM cleanup contractor, LM, and LM post-closure contractor have identified lessons learned during the transition and closure of the Mound site. The transition effort from

Geochemical prospecting for rare earth elements using termite mound materials

Science.gov (United States)

Horiuchi, Yu; Ohno, Tetsuji; Hoshino, Mihoko; Shin, Ki-Cheol; Murakami, Hiroyasu; Tsunematsu, Maiko; Watanabe, Yasushi

2014-12-01

The Blockspruit fluorite prospect, located in North West State of the Republic of South Africa, occurs within an actinolite rock zone that was emplaced into the Kenkelbos-type granite of Proterozoic age. There are a large number of termite mounds in the prospect. For geochemical prospecting for rare earth elements (REEs), in total, 200 samples of termite mound material were collected from actinolite rock and granite zones in the prospect. Geochemical analyses of these termite mound materials were conducted by two methods: portable X-ray fluorescence (XRF) spectrometry and inductively coupled plasma-mass spectrometry (ICP-MS). Comparison of the two methods broadly indicates positive correlations of REEs (La, Ce, Pr, Nd, and Y), in particular Y and La having a strong correlation. As the result of modal abundance analyses, the actinolite rock at surface mainly consists of ferro-actinolite (89.89 wt%) and includes xenotime (0.26 wt%) and monazite (0.21 wt%) grains as REE minerals. Termite mound materials from actinolite rock also contain xenotime (0.27 wt%) and monazite (0.41 wt%) grains. In addition, termite mound materials from the actinolite rock zone have high hematite and Fe silicate contents compared to those from granite zone. These relationships suggest that REE minerals in termite mound materials originate form actinolite rock. Geochemical anomaly maps of Y, La, and Fe concentrations drawn based on the result of the portable XRF analyses show that high concentrations of these elements trend from SW to NE which broadly correspond to occurrences of actinolite body. These results indicate that termite mounds are an effective tool for REE geochemical prospection in the study area for both light REEs and Y, but a more detailed survey is required to establish the distribution of the actinolite rock body.

Layered hydrothermal barite-sulfide mound field, East Diamante Caldera, Mariana volcanic arc

Science.gov (United States)

Hein, James R.; de Ronde, Cornel E. J.; Koski, Randolph A.; Ditchburn, Robert G.; Mizell, Kira; Tamura, Yoshihiko; Stern, Robert J.; Conrad, Tracey; Ishizuka, Osamu; Leybourne, Matthew I.

2014-01-01

East Diamante is a submarine volcano in the southern Mariana arc that is host to a complex caldera ~5 × 10 km (elongated ENE-WSW) that is breached along its northern and southwestern sectors. A large field of barite-sulfide mounds was discovered in June 2009 and revisited in July 2010 with the R/V Natsushima, using the ROV Hyper-Dolphin. The mound field occurs on the northeast flank of a cluster of resurgent dacite domes in the central caldera, near an active black smoker vent field. A 40Ar/39Ar age of 20,000 ± 4000 years was obtained from a dacite sample. The mound field is aligned along a series of fractures and extends for more than 180 m east-west and >120 m north-south. Individual mounds are typically 1 to 3 m tall and 0.5 to 2 m wide, with lengths from about 3 to 8 m. The mounds are dominated by barite + sphalerite layers with the margins of each layer composed of barite with disseminated sulfides. Rare, inactive spires and chimneys sit atop some mounds and also occur as clusters away from the mounds. Iron and Mn oxides are currently forming small (caldera, mineralization resulted from focused flow along small segments of linear fractures rather than from a point source, typical of hydrothermal chimney fields. Based on the mineral assemblage, the maximum fluid temperatures were ~260°C, near the boiling point for the water depths of the mound field (367–406 m). Lateral fluid flow within the mounds precipitated interstitial sphalerite, silica, and Pb minerals within a network of barite with disseminated sulfides; silica was the final phase to precipitate. The current low-temperature precipitation of Fe and Mn oxides and silica may represent rejuvenation of the system.

Beads from Inhumation Rite Burials of Gnezdovo Burial Mound

Directory of Open Access Journals (Sweden)

Dobrova Olga P.

2017-12-01

Full Text Available The beads from 33 inhumation burials at Gnezdovo burial mound are examined in the article. The beads (total 367 were crafted from stretched tube (258, stretched stick (3, winding (45, press molding (2 pcs., welding (2 pcs., and mosaic beads (9 pcs.. The burial mound contains virtually no broken beads, including the settlement's most common yellow glass beads. Besides glass beads, cornelian, crystal, amber and faience beads have been registered among the burial mound material, as well as beads crafted with metal. Apart from beads, grave inventories contained a series of pendants with a bead strung on a wire ring. The considered complexes contain five pendants of this type. Besides Gnezdovo, similar pendants have been discovered in Kiev, Timerev, Pskov and Vladimir barrows. A comparison between bead sets from Gnezdovo and Kiev burial mounds allows to conclude that the general composition and occurrence frequency of beads is identical for these burials. At the same time, beads crafted with rock crystal, cornelian and metal are more frequently discovered in Kiev inhumations.

"Magnetic" termite mound surfaces are oriented to suit wind and shade conditions.

Science.gov (United States)

Jacklyn, Peter M

1992-09-01

The termites Amitermes meridionalis and A. laurensis construct remarkable meridional or "magnetic" mounds in northern Australia. These mounds vary geographically in mean orientation in a manner that suggests such variation is an adaptive response to local environmental conditions. Theoretical modelling of solar irradiance and mound rotation experiments show that maintenance of an eastern face temperature plateau during the dry season is the most likely physical basis for the mound orientation response. Subsequent heat transfer analysis shows that habitat wind speed and shading conditions also affect face temperature gradients such as the rate of eastern face temperature change. It is then demonstrated that the geographic variation in mean mound orientation follows the geographic variation in long-term wind speed and shading conditions across northern Australia such that an eastern face temperature plateau is maintained in all locations.

The Surales, Self-Organized Earth-Mound Landscapes Made by Earthworms in a Seasonal Tropical Wetland.

Directory of Open Access Journals (Sweden)

Anne Zangerlé

Full Text Available The formation, functioning and emergent properties of patterned landscapes have recently drawn increased attention, notably in semi-arid ecosystems. We describe and analyze a set of similarly spectacular landforms in seasonal tropical wetlands. Surales landscapes, comprised of densely packed, regularly spaced mounds, cover large areas of the Orinoco Llanos. Although descriptions of surales date back to the 1940's, their ecology is virtually unknown. From data on soil physical and chemical properties, soil macrofauna, vegetation and aerial imagery, we provide evidence of the spatial extent of surales and how they form and develop. Mounds are largely comprised of earthworm casts. Recognizable, recently produced casts account for up to one-half of total soil mass. Locally, mounds are relatively constant in size, but vary greatly across sites in diameter (0.5-5 m and height (from 0.3 m to over 2 m. This variation appears to reflect a chronosequence of surales formation and growth. Mound shape (round to labyrinth varies across elevational gradients. Mounds are initiated when large earthworms feed in shallowly flooded soils, depositing casts that form 'towers' above water level. Using permanent galleries, each earthworm returns repeatedly to the same spot to deposit casts and to respire. Over time, the tower becomes a mound. Because each earthworm has a restricted foraging radius, there is net movement of soil to the mound from the surrounding area. As the mound grows, its basin thus becomes deeper, making initiation of a new mound nearby more difficult. When mounds already initiated are situated close together, the basin between them is filled and mounds coalesce to form larger composite mounds. Over time, this process produces mounds up to 5 m in diameter and 2 m tall. Our results suggest that one earthworm species drives self-organizing processes that produce keystone structures determining ecosystem functioning and development.

The Surales, Self-Organized Earth-Mound Landscapes Made by Earthworms in a Seasonal Tropical Wetland.

Science.gov (United States)

Zangerlé, Anne; Renard, Delphine; Iriarte, José; Suarez Jimenez, Luz Elena; Adame Montoya, Kisay Lorena; Juilleret, Jérôme; McKey, Doyle

2016-01-01

The formation, functioning and emergent properties of patterned landscapes have recently drawn increased attention, notably in semi-arid ecosystems. We describe and analyze a set of similarly spectacular landforms in seasonal tropical wetlands. Surales landscapes, comprised of densely packed, regularly spaced mounds, cover large areas of the Orinoco Llanos. Although descriptions of surales date back to the 1940's, their ecology is virtually unknown. From data on soil physical and chemical properties, soil macrofauna, vegetation and aerial imagery, we provide evidence of the spatial extent of surales and how they form and develop. Mounds are largely comprised of earthworm casts. Recognizable, recently produced casts account for up to one-half of total soil mass. Locally, mounds are relatively constant in size, but vary greatly across sites in diameter (0.5-5 m) and height (from 0.3 m to over 2 m). This variation appears to reflect a chronosequence of surales formation and growth. Mound shape (round to labyrinth) varies across elevational gradients. Mounds are initiated when large earthworms feed in shallowly flooded soils, depositing casts that form 'towers' above water level. Using permanent galleries, each earthworm returns repeatedly to the same spot to deposit casts and to respire. Over time, the tower becomes a mound. Because each earthworm has a restricted foraging radius, there is net movement of soil to the mound from the surrounding area. As the mound grows, its basin thus becomes deeper, making initiation of a new mound nearby more difficult. When mounds already initiated are situated close together, the basin between them is filled and mounds coalesce to form larger composite mounds. Over time, this process produces mounds up to 5 m in diameter and 2 m tall. Our results suggest that one earthworm species drives self-organizing processes that produce keystone structures determining ecosystem functioning and development.

The Surales, Self-Organized Earth-Mound Landscapes Made by Earthworms in a Seasonal Tropical Wetland

Science.gov (United States)

Iriarte, José; Suarez Jimenez, Luz Elena; Adame Montoya, Kisay Lorena; Juilleret, Jérôme; McKey, Doyle

2016-01-01

The formation, functioning and emergent properties of patterned landscapes have recently drawn increased attention, notably in semi-arid ecosystems. We describe and analyze a set of similarly spectacular landforms in seasonal tropical wetlands. Surales landscapes, comprised of densely packed, regularly spaced mounds, cover large areas of the Orinoco Llanos. Although descriptions of surales date back to the 1940’s, their ecology is virtually unknown. From data on soil physical and chemical properties, soil macrofauna, vegetation and aerial imagery, we provide evidence of the spatial extent of surales and how they form and develop. Mounds are largely comprised of earthworm casts. Recognizable, recently produced casts account for up to one-half of total soil mass. Locally, mounds are relatively constant in size, but vary greatly across sites in diameter (0.5–5 m) and height (from 0.3 m to over 2 m). This variation appears to reflect a chronosequence of surales formation and growth. Mound shape (round to labyrinth) varies across elevational gradients. Mounds are initiated when large earthworms feed in shallowly flooded soils, depositing casts that form ‘towers’ above water level. Using permanent galleries, each earthworm returns repeatedly to the same spot to deposit casts and to respire. Over time, the tower becomes a mound. Because each earthworm has a restricted foraging radius, there is net movement of soil to the mound from the surrounding area. As the mound grows, its basin thus becomes deeper, making initiation of a new mound nearby more difficult. When mounds already initiated are situated close together, the basin between them is filled and mounds coalesce to form larger composite mounds. Over time, this process produces mounds up to 5 m in diameter and 2 m tall. Our results suggest that one earthworm species drives self-organizing processes that produce keystone structures determining ecosystem functioning and development. PMID:27168157

Variability of soil properties within large termite mounds in South Katanga, DRC - origins and applications.

Science.gov (United States)

Erens, Hans; Bazirake Mujinya, Basile; Boeckx, Pascal; Baert, Geert; Mees, Florias; Van Ranst, Eric

2014-05-01

The miombo woodlands of South Katanga (D.R. Congo) are characterized by a high spatial density of large conic termite mounds built by Macrotermes falciger (3 to 5 ha-1). With an average height of 5.05 m and diameter of 14.88 m, these are some of the largest biogenic structures in the world. The mound material is known to differ considerably from the surrounding Ferralsols. Specifically, mound material exhibits a finer texture, higher CEC and exchangeable basic cation content, lower organic matter content, and an accumulation of phosphorous, nitrate and secondary carbonates. However, as demonstrated by the present study, these soil properties are far from uniform within the volume of the mound. The termites' nesting and foraging activity, combined with pedogenic processes over extended periods of time, generates a wide range of physical, chemical, and biological conditions in different parts of the mound. Analysis of samples taken along a cross-section of a large active mound allowed generating contour plots, thus visualizing the variability of soil properties within the mound. The central columns of three other mounds were sampled to confirm apparent trends. The contour plots show that the mounds comprise four functional zones: (i) the active nest, found at the top; (ii) an accumulation zone , in more central parts of the mound; (iii) a dense inactive zone, surrounding the accumulation zone and consisting of accumulated erosion products from former active nests; and (iv) the outer mantle, characterized by intense varied biological activity and by a well-developed soil structure. Intermittent leaching plays a key role in explaining these patterns. Using radiocarbon dating, we found that some of these mounds are at least 2000 years old. Their current size and shape is likely the result of successive stages of erosion and rebuilding, in the course of alternating periods of mound abandonment and recolonization. Over time, termite foraging combined with limited leaching

Wave Run-up on the Zeebrugge Rubble Mound Breakwater

DEFF Research Database (Denmark)

De Rouck, Julien; Van de Walle, Björn; Troch, Peter

2007-01-01

A clear difference between full-scale wave run-up measurements and small-scale model test results had been noticed during a MAST II project. This finding initiated a thorough study of wave run-up through the European MAST III OPTICREST project. Full-scale measurement have been carried out...... on the Zeebrugge rubble mound breakwater. This breakwater has been modeled in three laboratories: two 2D models at a scale of 1:30 and one 3D model at a scale of 1:40 have been buildt at Flanders Hydraulics (Belgium), at Universidad Politécnica de Valencia (Spain), and at Aalborg University (Denmark). Wave run......-up has been measured by a digital run-up gauge. This gauge has proven to measure wave run-up more accurately than the traditional wire gauge. Wave spectra measured in Zeebrugge have been reproduced in the laboratories. Results of small-scale model tests and full-scale measurements results have been...

Environmental assessment for commercialization of the Mound Plant

International Nuclear Information System (INIS)

1994-01-01

In November 1993 US DOE decided to phase out operations at the Mound Plant in Miamisburg, Ohio, with the goal of releasing the site for commercial use. The broad concept is to transform the plant into an advanced manufacturing center with the main focus on commercializing products and other technology. DOE proposes to lease portions of the Mound Plant to commercial enterprises. This Environmental Impact statement has a finding of no significant impact in reference to such action

How Termite Mounds Breath?

Science.gov (United States)

Saxena, Saurabh; Yaghoobian, Neda

2017-11-01

Fungus-cultivating termites of the subfamily Macrotermitinae that are extensively found throughout sub-Saharan Africa and south East Asia are one species of termites that collectively build massive, uninhabited, complex structures. These structures, which are much larger than the size of an individual termite, effectively use natural wind and solar energies and the energy embodied in colony's metabolic activity to maintain the necessary condition for termite survival. These mounds enclose a subterranean nest, where the termite live and cultivate fungus, as well as a complex network of tunnels consisting of a large, vertically oriented central chimney, surface conduits, and lateral connectives that connect the chimney and the surface conduits. In this study, we use computational modeling to explore the combined interaction of geometry, heterogeneous thermal mass, and porosity with the external turbulent wind and solar radiation to investigate the physical principles and fundamental aero-thermodynamics underlying the controlled and stable climate of termite mounds. Exploitation of natural resources of wind and solar energies in these natural systems for the purpose of ventilation will lead to new lessons for improving human habitats conditions.

Methane oxidation by termite mounds estimated by the carbon isotopic composition of methane

Science.gov (United States)

Sugimoto, Atsuko; Inoue, Tetsushi; Kirtibutr, Nit; Abe, Takuya

1998-12-01

Emission rates and carbon isotope ratios of CH4, emitted by workers of termites, and of CH4, emitted from their mounds, were observed in a dry evergreen forest in Thailand to estimate the proportion of CH4 oxidized during emission through the mound. The δ13C of CH4 emitted from a termite mound (-70.9 to -82.4‰) was higher than that of CH4 emitted by workers in the mound (-85.4 to -97. l‰). Using a fractionation factor (a = 0.987) for oxidation of CH4 which was obtained in the incubation experiment, an emission factor defined as (CH4 emitted from a termite mound/CH4 produced by termites) was calculated. The emission factor obtained in each termite mound was nearly zero for Macrotermes (fungus-growing termites), of which the nest has a thick soil wall and subterrannean termites, and 0.17 to 0.47 for Termitinae (small-mound-making termites). Global CH4 emission by termites was estimated on the basis of the CH4 emission rates by workers and termite biomass with the emission factors. The calculated result was 1.5 to 7.4 Tg/y (0.3 to 1.3% of total source), which is considerably smaller than the estimate by the IPCC [1994].

Upper Silurian reef mounds on a shallowing carbonate ramp, Devon Island, Arctic Canada

Energy Technology Data Exchange (ETDEWEB)

Dixon, O A [Ottawa Univ., ON (Canada); Graf, G C [Chevron Canada Resources, Calgary, AB (Canada)

1992-03-01

Near Gascoyne Inlet, the topmost Douro and lowermost Barlow Inlet formations record overall upward shallowing from ramp to shallow shelf conditions. This transitional sequence contains bioherms of various sizes, from small isolated reef mounds 1-2 m across to larger, compound reef mounds over 50 m thick and 60 m across, as well as distictive inter- and pre-reef mound facies. The larger reef mounds show stages intermediate in character between those in sponge-dominated reef mounds of the Douro Formation and in larger stromatoporoid-crinoid dominated reefs in the Barlow Inlet Formation. Three principal reef mounds developed in turn. An initial partly lithified lime mudstone, containing scattered corals and apparently relict sponge-cryptomicrobial fabrics, developed on sheets of oncolitic storm debris in mainly low energy conditions between storm and fairweather wave bases. With gradual shallowing and progressively higher energy conditions above fairweather wave base, a middle facies of coral- and crinoid-rich mudstone developed. An abrupt deepening restored conditions of low energy, and the ensuing upper facies of the reef mounds is more varied, comprising sparsely fossiliferous and locally fenestral lime mudstones, patchy coral bafflestone and bindstone, coarse encrinites and substantially culminating stromatoporoid bindstone. 36 refs., 14 figs., 5 tabs.

Monthly fluctuation of termite caste proportions (Isoptera) within fire ant mounds (hymenoptera: formicidae)

Science.gov (United States)

Thomas G. Shelton; J.T. Vogt; Marla J. Tanley; Arthur G. Appel

2003-01-01

Monthly abundance and caste proportions of subterranean termites (Reticulitennes spp.) inhabiting red imported fire ant (Solenopsis invicta Buren) mounds were recorded during 1999 and 2000 from a relatively undisturbed forest edge in Tuskegee, Alabama. Temperature data were also recorded at these mounds; mean air, soil, and mound temperatures followed a sine model over...

Environmental assessment of coal waste mounds in Japan using remote sensing techniques

Energy Technology Data Exchange (ETDEWEB)

Lewis, A J; Gotoh, K; Aoyama, K; Aoki, S [Louisiana State University, Baton Rouge, LA (United States). Department of Geography and Anthropology

1993-01-01

Focuses on the application of remote sensing techniques to the study of coal waste mounds. The situation at the coal waste mounds in Fukuoka, Japan is cited. Guidelines on film parameters, photographic keys and tasks required to inventory, monitor and manage coal waste mounds in Japan are addressed. Application of photogrammetry, remote sensing, aerial photography and satellite imagery techniques in monitoring spoil banks is reviewed. Applicability of the techniques is discussed. 24 refs.

The relationships between termite mound CH4/CO2 emissions and internal concentration ratios are species specific

Directory of Open Access Journals (Sweden)

H. Jamali

2013-04-01

Full Text Available We investigated the relative importance of CH4 and CO2 fluxes from soil and termite mounds at four different sites in the tropical savannas of northern Australia near Darwin and assessed different methods to indirectly predict CH4 fluxes based on CO2 fluxes and internal gas concentrations. The annual flux from termite mounds and surrounding soil was dominated by CO2 with large variations among sites. On a carbon dioxide equivalent (CO2-e basis, annual CH4 flux estimates from termite mounds were 5- to 46-fold smaller than the concurrent annual CO2 flux estimates. Differences between annual soil CO2 and soil CH4 (CO2-e fluxes were even greater, soil CO2 fluxes being almost three orders of magnitude greater than soil CH4 (CO2-e fluxes at site. The contribution of CH4 and CO2 emissions from termite mounds to the total CH4 and CO2 emissions from termite mounds and soil in CO2-e was less than 1%. There were significant relationships between mound CH4 flux and mound CO2 flux, enabling the prediction of CH4 flux from measured CO2 flux; however, these relationships were clearly termite species specific. We also observed significant relationships between mound flux and gas concentration inside mound, for both CH4 and CO2, and for all termite species, thereby enabling the prediction of flux from measured mound internal gas concentration. However, these relationships were also termite species specific. Using the relationship between mound internal gas concentration and flux from one species to predict mound fluxes from other termite species (as has been done in the past would result in errors of more than 5-fold for mound CH4 flux and 3-fold for mound CO2 flux. This study highlights that CO2 fluxes from termite mounds are generally more than one order of magnitude greater than CH4 fluxes. There are species-specific relationships between CH4 and CO2 fluxes from a mound, and between the inside mound concentration of a gas and the mound flux emission of the

The relationships between termite mound CH4/CO2 emissions and internal concentration ratios are species specific

Science.gov (United States)

Jamali, H.; Livesley, S. J.; Hutley, L. B.; Fest, B.; Arndt, S. K.

2013-04-01

We investigated the relative importance of CH4 and CO2 fluxes from soil and termite mounds at four different sites in the tropical savannas of northern Australia near Darwin and assessed different methods to indirectly predict CH4 fluxes based on CO2 fluxes and internal gas concentrations. The annual flux from termite mounds and surrounding soil was dominated by CO2 with large variations among sites. On a carbon dioxide equivalent (CO2-e) basis, annual CH4 flux estimates from termite mounds were 5- to 46-fold smaller than the concurrent annual CO2 flux estimates. Differences between annual soil CO2 and soil CH4 (CO2-e) fluxes were even greater, soil CO2 fluxes being almost three orders of magnitude greater than soil CH4 (CO2-e) fluxes at site. The contribution of CH4 and CO2 emissions from termite mounds to the total CH4 and CO2 emissions from termite mounds and soil in CO2-e was less than 1%. There were significant relationships between mound CH4 flux and mound CO2 flux, enabling the prediction of CH4 flux from measured CO2 flux; however, these relationships were clearly termite species specific. We also observed significant relationships between mound flux and gas concentration inside mound, for both CH4 and CO2, and for all termite species, thereby enabling the prediction of flux from measured mound internal gas concentration. However, these relationships were also termite species specific. Using the relationship between mound internal gas concentration and flux from one species to predict mound fluxes from other termite species (as has been done in the past) would result in errors of more than 5-fold for mound CH4 flux and 3-fold for mound CO2 flux. This study highlights that CO2 fluxes from termite mounds are generally more than one order of magnitude greater than CH4 fluxes. There are species-specific relationships between CH4 and CO2 fluxes from a mound, and between the inside mound concentration of a gas and the mound flux emission of the same gas, but

The occurrence and development of peat mounds on King George Island (Maritime Antarctic

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Jerzy Fabiszewski

2014-01-01

Full Text Available On King George Island, South Shetlands Islands, a type of peat formation has been discovered which has not previously been reported from the Antarctic. These formations are in shape of mounds up to 7x 15 m in area, with a peat layer of about I m thick. About twenty five cm below the surface there is a layer of permanently frozen peat. The mounds are covered by living mosses (Polytrichum alpinum and Drepanocladus uncinatus, Antarctic hair grass (Deschampsia antarctica and lichens. Erosion fissures occurring on the surface are evidence of contemporary drying and cessation of the mound's growth. The initial phase of the development of the mounds began with a community dominated by Calliergidium austro-stramineum and Deschampsia antarctica, and their further development has been due to peat accumulation formed almost entirely by Calliergidium. The location of the mounds is near a penguin rookery, which clearly conditioned the minerotrophic character of these formations, as compared with the "moss peat banks" formed by Chorisodontium aciphyllum and Polytrichum al-pestre. Moreover, the peat mounds differ from the latter in several ways, e.g. rate of growth and floristic composition. Radiocarbon dating of peat from the base of one mound gave an age of 4090±60 years B.P. This suggests that the age of the tundra on King George Island is about 5000-4000 years.

Stability Of Rubble Mound Breakwaters Using High Density Rock

DEFF Research Database (Denmark)

Burcharth, H. F.; Beck, J. B.

2000-01-01

The present paper discusses the effect of mass density on stability of rubble mound breakwaters. A short literature review of existing knowledge is give to establish a background for the ongoing research. Furthermore, several model tests are described in which the stability of rubble mound...... breakwaters with armour stones of different densities are investigated. The results from the model test are discussed with respect to application and further research....

SPATIAL VARIABILITY AND VITALITY OF EPIGEOUS TERMITE MOUNDS IN PASTURES OF MATO GROSSO DO SUL, BRAZIL

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Sandra Santana Lima

2015-02-01

Full Text Available Epigeous termite mounds are frequently observed in pasture areas, but the processes regulating their population dynamics are poorly known. This study evaluated epigeous termite mounds in cultivated grasslands used as pastures, assessing their spatial distribution by means of geostatistics and evaluating their vitality. The study was conducted in the Cerrado biome in the municipality of Rio Brilhante, Mato Grosso do Sul, Brazil. In two pasture areas (Pasture 1 and Pasture 2, epigeous mounds (nests were georeferenced and analyzed for height, circumference and vitality (inhabited or not. The area occupied by the mounds was calculated and termite specimens were collected for taxonomic identification. The spatial distribution pattern of the mounds was analyzed with geostatistical procedures. In both pasture areas, all epigeous mounds were built by the same species, Cornitermes cumulans. The mean number of mounds per hectare was 68 in Pasture 1 and 127 in Pasture 2, representing 0.4 and 1 % of the entire area, respectively. A large majority of the mounds were active (vitality, 91 % in Pasture 1 and 84 % in Pasture 2. A “pure nugget effect” was observed in the semivariograms of height and nest circumference in both pastures reflecting randomized spatial distribution and confirming that the distribution of termite mounds in pastures had a non-standard distribution.

Elimination of the Mound-Building Termite, Nasutitermes exitiosus (Isoptera: Termitidae) in South-Eastern Australia Using Bistrifluron Bait.

Science.gov (United States)

Webb, Garry A; Mcclintock, Charles

2015-12-01

Bistrifluron, a benzoylphenylurea compound, was evaluated for efficacy against Nasutitermes exitiosus (Hill), a mound-building species in southern Australia. Bistrifluron bait (trade name Xterm) was delivered as containerized pellets inserted into plastic feeding stations implanted in the sides of mounds-60 g for bistrifluron bait-treated mounds and 120 g of blank bait for untreated mounds. Termites actively tunneled in the gaps between pellets and removed bait from the canisters. All five treated mounds were eventually eliminated, and all five untreated mounds remained active at the end of the trial. Four of the five treated mounds were considered dead and excavated after 26 wk, but there were earlier signs of mound distress-reduced repair of experimental casement damage and reduced activity in bait canisters by 22 wk and reduced internal mound temperature after 11 wk. One treated mound showed activity in the bait station right through until almost the end of the trial (47 wk), but excavation at 49 wk showed no further activity in the mound. The five untreated colonies removed on average 97% of blank bait offered, while the five treated colonies removed on average 39.1% of bait offered. There was a wide variation in temperature profiles of mounds (up to 15°C for both minimum and maximum internal temperatures), from the beginning of the trial and even before the effects of baiting were evident. © The Authors 2015. Published by Oxford University Press on behalf of Entomological Society of America. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Permanent groundwater storage in basaltic dyke fractures and termite mound viability

Science.gov (United States)

Mège, Daniel; Rango, Tewodros

2010-04-01

Many basaltic dykes of the Ethiopian flood basalt province are observed in the northwestern Ethiopian lowlands. In this area, the termites preferentially build their epigeous mounds on the top of dolerite dykes. The relationship between termite mounds and dykes is investigated from the analysis of their distribution along one of these dykes, of thickness 2-5 m, that we could follow over 2000 m. Termite mounds are periodically spaced (mean distance 63 m, R2 = 0.995), and located exclusively where the topographic relief of the dyke is not more than 2 m above the surrounding area. From these observations and from the geological context, a hydrological circuit model is proposed in which (1) dykes are preferential conduits for groundwater drainage during the rainy season due to pervasive jointing, (2) during the dry season, the portion of the dyke forming a local topographic relief area dries up more quickly than the surroundings, the elevation difference between the dyke summit and the surroundings being a factor restricting termite mound development. For dyke topographic relief >2 m, drying is an obstacle for maintaining the appropriate humidity for the termite colony life. Periodic termite mound spacing is unlikely to be related to dyke or other geological properties. It is more likely related to termite population behaviour, perhaps to clay shortage, which restricts termite population growth by limiting the quantity of building material available for mound extension, and triggers exploration for a new colonization site that will be located along the dyke at a distance from the former colony that may be controlled by the extent of the zone covered by its trail pheromones. This work brings out the importance of dykes in channelling and storing groundwater in semiarid regions, and shows that dykes can store groundwater permanently in such settings even though the dry season is half the year long. It contributes also to shedding light on water supply conditions

Sub-kilometre (intra-crater) mounds in Utopia Planitia, Mars: character, occurrence and possible formation hypotheses

Science.gov (United States)

Soare, Richard J.; Conway, Susan J.; Pearce, Geoffrey D.; Costard, François; Séjourné, Antoine

2013-08-01

At the middle latitudes of Utopia Planitia (˜35-45°N; ˜65-101°E) hundreds of small-sized mounds located in sub-kilometre impact craters dot the landscape. Their shape varies from circular to crescentic and their height ranges from ˜10 to 50 m. Often, metre to decametre pitting is observed, as is metres-thick banding or stratification. Mound albedo is relatively high, i.e. ˜0.16. The plain's terrain in the region, previously linked to the latitude-dependent mantle (LDM) of ice-dust, displays pitting and albedo similar to the small intra-crater mounds. Some workers have suggested that the mounds and the plain's terrain share a common ice-dust origin. If so, then scrutinising the mounds could provide analogical insight on the key geological characteristics and spatial distribution of the LDM itself. Other workers have hypothesised that the mounds are eroded sedimentary landforms or periglacial mounds underlain by a perennial ice-core (closed-system pingos). In this article we develop and then discuss each of the three mound-hypotheses in a much more substantial manner than has been done hitherto. Towards this end we use high-resolution images, present a detailed regional-map of mound distribution and establish a regional platform of topographical analysis using MOLA data superposed on a large-scale CTX mosaic. Although the ice-dust hypothesis is consistent with some observations and measurements, we find that a (loess-based) sedimentary hypothesis shows greater plausibility. Of the three hypotheses evaluated, the pingo or periglacial one is the weakest.

Molluskan fauna in two shell mounds in the State of Parana coast, Brazil

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Marcos de Vasconcellos Gernet

2011-09-01

Full Text Available The shell mounds are artificial formations consisting mostly of mollusk shells used in the feeding of the prehistoric peoples which inhabited our coast. These sites are found throughout the Brazilian coast, and hundreds of them were cataloged in the State of Paraná since the 1940s. The fragility of these sites, their importance as evidences of our prehistoric period, and its abrupt disappearance, justify the need for new researches which contribute to contextualize and draw up plans to preserve this heritage. The works related to the molluskan fauna found in the shell mounds are restricted to refer to the most common species and, sometimes, just their popular names. A greater knowledge on these prehistoric inhabitants’ diet allows a better understanding of ancient natural ecosystems. The survey of mollusks was carried out in the shell mounds Guaraguaçu and Boguaçu, in the towns of Pontal do Parana and Guaratuba, respectively, and performed through visual inspection, reading of specialized bibliography and comparison to previous works on the fauna of the shell mounds in the State of Parana coast. Altogether, 29 species were observed in the shell mound Guaraguaçu and 17 species were observed in the shell mound Boguaçu, resulting in a total of 31 species.

Estimating Groundwater Mounding in Sloping Aquifers for Managed Aquifer Recharge.

Science.gov (United States)

Zlotnik, Vitaly A; Kacimov, Anvar; Al-Maktoumi, Ali

2017-11-01

Design of managed aquifer recharge (MAR) for augmentation of groundwater resources often lacks detailed data, and simple diagnostic tools for evaluation of the water table in a broad range of parameters are needed. In many large-scale MAR projects, the effect of a regional aquifer base dip cannot be ignored due to the scale of recharge sources (e.g., wadis, streams, reservoirs). However, Hantush's (1967) solution for a horizontal aquifer base is commonly used. To address sloping aquifers, a new closed-form analytical solution for water table mound accounts for the geometry and orientation of recharge sources at the land surface with respect to the aquifer base dip. The solution, based on the Dupiuit-Forchheimer approximation, Green's function method, and coordinate transformations is convenient for computing. This solution reveals important MAR traits in variance with Hantush's solution: mounding is limited in time and space; elevation of the mound is strongly affected by the dip angle; and the peak of the mound moves over time. These findings have important practical implications for assessment of various MAR scenarios, including waterlogging potential and determining proper rates of recharge. Computations are illustrated for several characteristic MAR settings. © 2017, National Ground Water Association.

The relationship between termite mound CH4/CO2 emissions and internal concentration ratios are species specific

Science.gov (United States)

Jamali, H.; Livesley, S. J.; Hutley, L. B.; Fest, B.; Arndt, S. K.

2012-12-01

1. We investigated the relative importance of CH4 and CO2 fluxes from soil and termite mounds at four different sites in the tropical savannas of Northern Australia near Darwin and assessed different methods to indirectly predict CH4 fluxes based on CO2 fluxes and internal gas concentrations. 2. The annual flux from termite mounds and surrounding soil was dominated by CO2 with large variations among sites. On a CO2-e basis, annual CH4 flux estimates from termite mounds were 5- to 46-fold smaller than the concurrent annual CO2 flux estimates. Differences between annual soil CO2 and soil CH4 (CO2-e) fluxes were even greater, soil CO2 fluxes being almost three orders of magnitude greater than soil CH4 (CO2-e) fluxes at site. 3. There were significant relationships between mound CH4 flux and mound CO2 flux, enabling the prediction of CH4 flux from measured CO2 flux, however, these relationships were clearly termite species specific. 4. We also observed significant relationships between mound flux and gas concentration inside mound, for both CH4 and CO2, and for all termite species, thereby enabling the prediction of flux from measured mound internal gas concentration. However, these relationships were also termite species specific. Using the relationship between mound internal gas concentration and flux from one species to predict mound fluxes from other termite species (as has been done in past) would result in errors of more than 5-fold for CH4 and 3-fold for CO2. 5. This study highlights that CO2 fluxes from termite mounds are generally more than one order of magnitude greater than CH4 fluxes. There are species-specific relationships between CH4 and CO2 fluxes from a~mound, and between the inside mound concentration of a gas and the mound flux emission of the same gas, but these relationships vary greatly among termite species. Consequently, there is no generic relationship that will allow for the prediction of CH4 fluxes from termite mounds of all species.

Greener management practices - ash mound reclamation

Energy Technology Data Exchange (ETDEWEB)

Kapur, S.L.; Shyam, A.K.; Soni, R. [National Thermal Power Corp. Ltd., New Delhi (India)

2002-12-01

The dry ash handling system at Dadri has been pioneered for the first time in India by the National Thermal Power Corporation (NTPC). The system is similar to that at the Drax power station in England. The paper reports the successful experimental trials carried out on vegetation of temporary ash mounds to assess the growth potential of local herbs, shrubs, trees and grasses directly on ash with no soil cover or fertiliser. These were extended to trials directly on the available (completed) mound surfaces. The grass Cynodon dactylon germinated well as did seeds of tree species including the Casurarina and Eucalyptus. It is hoped that efforts at Dadri will ultimately transform the ash into a productive and self sustaining ecosystem, as leaf fall adds additional organic material and the weathering process continues. 6 refs., 6 figs.

Stability of Monolithic Rubble Mound Breakwater Crown Walls Subjected to Impulsive Loading

DEFF Research Database (Denmark)

Nørgaard, Jørgen Harck; Andersen, Lars Vabbersgaard; Andersen, Thomas Lykke

2012-01-01

This paper evaluates the validity of a simple onedimensional dynamic analysis as well as a FEM model to determine the sliding of a rubble mound breakwater crown wall. The evaluation is based on a case example with real wave load time series and displacements measured from two-dimensional physical...... model tests. The outcome is a more reliable evaluation of the applicability of simple dynamic calculations for the estimation of sliding distances of rubble mound superstructures. This is of great practical importance since many existing rubble mound crown walls are subjected to increasing wave loads...

Indigenous utilization of termite mounds and their sustainability in a rice growing village of the central plain of Laos.

Science.gov (United States)

Miyagawa, Shuichi; Koyama, Yusaku; Kokubo, Mika; Matsushita, Yuichi; Adachi, Yoshinao; Sivilay, Sengdeaune; Kawakubo, Nobumitsu; Oba, Shinya

2011-08-18

The objective of this study was to investigate the indigenous utilization of termite mounds and termites in a rain-fed rice growing village in the central plain of Laos, where rice production is low and varies year-to-year, and to assess the possibility of sustainable termite mound utilization in the future. This research was carried out from 2007 to 2009. The termites were collected from their mounds and surrounding areas and identified. Twenty villagers were interviewed on their use of termites and their mounds in the village. Sixty-three mounds were measured to determine their dimensions in early March, early July and middle to late November, 2009. Eleven species of Termitidae were recorded during the survey period. It was found that the villagers use termite mounds as fertilizer for growing rice, vegetable beds and charcoal kilns. The villagers collected termites for food and as feed for breeding fish. Over the survey period, 81% of the mounds surveyed increased in volume; however, the volume was estimated to decrease by 0.114 m3 mound(-1) year(-1) on average due to several mounds being completely cut out. It was concluded that current mound utilization by villagers is not sustainable. To ensure sustainable termite utilization in the future, studies should be conducted to enhance factors that promote mound restoration by termites. Furthermore, it will be necessary to improve mound conservation methods used by the villagers after changes in the soil mass of mounds in paddy fields and forests has been measured accurately. The socio-economic factors that affect mound utilization should also be studied.

Indigenous utilization of termite mounds and their sustainability in a rice growing village of the central plain of Laos

Directory of Open Access Journals (Sweden)

Sivilay Sengdeaune

2011-08-01

Full Text Available Abstract Background The objective of this study was to investigate the indigenous utilization of termite mounds and termites in a rain-fed rice growing village in the central plain of Laos, where rice production is low and varies year-to-year, and to assess the possibility of sustainable termite mound utilization in the future. This research was carried out from 2007 to 2009. Methods The termites were collected from their mounds and surrounding areas and identified. Twenty villagers were interviewed on their use of termites and their mounds in the village. Sixty-three mounds were measured to determine their dimensions in early March, early July and middle to late November, 2009. Results Eleven species of Termitidae were recorded during the survey period. It was found that the villagers use termite mounds as fertilizer for growing rice, vegetable beds and charcoal kilns. The villagers collected termites for food and as feed for breeding fish. Over the survey period, 81% of the mounds surveyed increased in volume; however, the volume was estimated to decrease by 0.114 m3 mound-1 year-1 on average due to several mounds being completely cut out. Conclusion It was concluded that current mound utilization by villagers is not sustainable. To ensure sustainable termite utilization in the future, studies should be conducted to enhance factors that promote mound restoration by termites. Furthermore, it will be necessary to improve mound conservation methods used by the villagers after changes in the soil mass of mounds in paddy fields and forests has been measured accurately. The socio-economic factors that affect mound utilization should also be studied.

The hydrology and preservation condition in the flat topped burial mound Klangshøj at Vennebjerg in Vendsyssel

DEFF Research Database (Denmark)

Breuning-Madsen, Henrik; Henriksen, Peter Steen; Kristensen, Jeppe Ågård

2016-01-01

Klangshøj is a flat-topped burial mound similar to the Royal Jelling mounds, although smaller. The myths tell that a well has existed on top of the mound as at Jelling and a spring had flown at the base of the mound. In order to verify the myths and a similar hydrology in Klangshøj as found...... borings, where undecomposed plant remnants, occasionally greenish, were observed. A 14C-dating showed that the mound was built in the Viking Age. The hydrology in Klangshøj is the same as in the Jelling mounds, with a permeable bioturbation zone covering almost impermeable, distinct sod layers. This form...

Active hydrothermal and non-active massive sulfide mound investigation using a new multiparameter chemical sensor

Science.gov (United States)

Han, C.; Wu, G.; Qin, H.; Wang, Z.

2012-12-01

Investigation of active hydrothermal mound as well as non-active massive sulfide mound are studied recently. However, there is still lack of in-situ detection method for the non-active massive sulfide mound. Even though Transient ElectroMagnetic (TEM) and Electric Self-potential (SP) methods are good, they both are labour, time and money cost work. We proposed a new multiparameter chemical sensor method to study the seafloor active hydrothermal mound as well as non-active massive sulfide mound. This sensor integrates Eh, S2- ions concentration and pH electrochemical electrodes together, and could found chemical change caused by the active hydrothermal vent, even weak chemical abnormalities by non-active massive sulfide hydrothermal mound which MARP and CTD sometimes cannot detect. In 2012, the 1st Leg of the Chinese 26th cruise, the multiparameter chemical sensor was carried out with the deepsea camera system over the Carlsberg Ridge in Indian Ocean by R/V DAYANGYIHAO. It was shown small Eh and S2- ions concentration abnormal around a site at Northwest Indian ridge. This site was also evidenced by the TV grab. In the 2nd Leg of the same cruise in June, this chemical sensor was carried out with TEM and SP survey system. The chemical abnormalities are matched very well with both TEM and SP survey results. The results show that the multiparameter chemical sensor method not only can detect active hydrothermal mound, but also can find the non-active massive sulfide hydrothermal mound.

Differences between bacterial communities in the gut of a soil-feeding termite (Cubitermes niokoloensis) and its mounds.

Science.gov (United States)

Fall, Saliou; Hamelin, Jérôme; Ndiaye, Farma; Assigbetse, Komi; Aragno, Michel; Chotte, Jean Luc; Brauman, Alain

2007-08-01

In tropical ecosystems, termite mound soils constitute an important soil compartment covering around 10% of African soils. Previous studies have shown (S. Fall, S. Nazaret, J. L. Chotte, and A. Brauman, Microb. Ecol. 28:191-199, 2004) that the bacterial genetic structure of the mounds of soil-feeding termites (Cubitermes niokoloensis) is different from that of their surrounding soil. The aim of this study was to characterize the specificity of bacterial communities within mounds with respect to the digestive and soil origins of the mound. We have compared the bacterial community structures of a termite mound, termite gut sections, and surrounding soil using PCR-denaturing gradient gel electrophoresis (DGGE) analysis and cloning and sequencing of PCR-amplified 16S rRNA gene fragments. DGGE analysis revealed a drastic difference between the genetic structures of the bacterial communities of the termite gut and the mound. Analysis of 266 clones, including 54 from excised bands, revealed a high level of diversity in each biota investigated. The soil-feeding termite mound was dominated by the Actinobacteria phylum, whereas the Firmicutes and Proteobacteria phyla dominate the gut sections of termites and the surrounding soil, respectively. Phylogenetic analyses revealed a distinct clustering of Actinobacteria phylotypes between the mound and the surrounding soil. The Actinobacteria clones of the termite mound were diverse, distributed among 10 distinct families, and like those in the termite gut environment lightly dominated by the Nocardioidaceae family. Our findings confirmed that the soil-feeding termite mound (C. niokoloensis) represents a specific bacterial habitat in the tropics.

Towards the Automatic Detection of Pre-Existing Termite Mounds through UAS and Hyperspectral Imagery.

Science.gov (United States)

Sandino, Juan; Wooler, Adam; Gonzalez, Felipe

2017-09-24

The increased technological developments in Unmanned Aerial Vehicles (UAVs) combined with artificial intelligence and Machine Learning (ML) approaches have opened the possibility of remote sensing of extensive areas of arid lands. In this paper, a novel approach towards the detection of termite mounds with the use of a UAV, hyperspectral imagery, ML and digital image processing is intended. A new pipeline process is proposed to detect termite mounds automatically and to reduce, consequently, detection times. For the classification stage, several ML classification algorithms' outcomes were studied, selecting support vector machines as the best approach for their role in image classification of pre-existing termite mounds. Various test conditions were applied to the proposed algorithm, obtaining an overall accuracy of 68%. Images with satisfactory mound detection proved that the method is "resolution-dependent". These mounds were detected regardless of their rotation and position in the aerial image. However, image distortion reduced the number of detected mounds due to the inclusion of a shape analysis method in the object detection phase, and image resolution is still determinant to obtain accurate results. Hyperspectral imagery demonstrated better capabilities to classify a huge set of materials than implementing traditional segmentation methods on RGB images only.

Ant and termite mound coinhabitants in the wetlands of Santo Antonio da Patrulha, Rio Grande do Sul, Brazil

Directory of Open Access Journals (Sweden)

E. Diehl

Full Text Available This paper reports on ant and termite species inhabiting the mounds (murundus found in three wetland sites in Santo Antonio da Patrulha. Ants and termites were found in 100% of the mounds of two sites and in 20% of those in the third site. Colonies of Camponotus fastigatus were found inhabiting all the mounds, while colonies of Brachymyrmex sp., Linepithema sp., Pheidole sp., and/or Solenopsis sp. were collected in less than 30% of the mounds. In the mounds of the three sites, colonies of Anoplotermes sp. and/or Aparatermes sp. termites were found together with the ant colonies. Another cohabiting termite species, Cortaritermes sp., was found only in the mounds of one site. The results suggest that C. fastigatus is the species building the mounds, with the other species, whether ants or termites, being the inquilines.

Ant and termite mound coinhabitants in the wetlands of Santo Antonio da Patrulha, Rio Grande do Sul, Brazil.

Science.gov (United States)

Diehl, E; Junqueira, L K; Berti-Filho, E

2005-08-01

This paper reports on ant and termite species inhabiting the mounds (murundus) found in three wetland sites in Santo Antonio da Patrulha. Ants and termites were found in 100% of the mounds of two sites and in 20% of those in the third site. Colonies of Camponotus fastigatus were found inhabiting all the mounds, while colonies of Brachymyrmex sp., Linepithema sp., Pheidole sp., and/or Solenopsis sp. were collected in less than 30% of the mounds. In the mounds of the three sites, colonies of Anoplotermes sp. and/or Aparatermes sp. termites were found together with the ant colonies. Another cohabiting termite species, Cortaritermes sp., was found only in the mounds of one site. The results suggest that C. fastigatus is the species building the mounds, with the other species, whether ants or termites, being the inquilines.

Stochastic Design of Rubble Mound Breakwaters

DEFF Research Database (Denmark)

Nielsen, Søren R.K.; Burcharth, Hans F.

The paper presents a level III reliability method from which the armour layer of rubble mound breakwaters can be designed, so that the total costs of construction price and expected maintaince expenses are minimized. Since the physics of the wave-structure interaction are not yet fully understood...

Three-dimensional architecture and development of Danianbryozoan mounds at Limhamn, south-west Sweden, usingground-penetrating radar

DEFF Research Database (Denmark)

Nielsen, Lars; Schack von Brockdorff, A.; Bjerager, Morten Gustav Erik

2009-01-01

in the Limhamn limestone quarry, south-west Sweden, obtained from combined reflected ground-penetrating radar signals and outcrop analysis provide new information about the architecture and growth development of such mounds. The mounds are composed of bryozoan limestone and dark-grey to black flint bands which...... outline mound geometries. Ground-penetrating radar data sections are collected over a 120 m by 60 m grid of data lines with trace spacing of 0·25 m, providing a depth penetration of 7 to 12 m and a vertical resolution of ca 0·30 m. The ground-penetrating radar images outline the geometry of the internal...... layering of the mounds which, typically, have widths and lengths of 30 to 60 m and heights of 5 to 10 m. Mound architecture and growth show great variability in the ground-penetrating radar images. Small-scale mound structures with a palaeorelief of only a few metres may constitute the basis for growth...

Dynamic environments of fungus-farming termite mounds exert growth-modulating effects on fungal crop parasites.

Science.gov (United States)

Katariya, Lakshya; Ramesh, Priya B; Borges, Renee M

2018-03-01

This study investigated for the first time the impact of the internal mound environment of fungus-growing termites on the growth of fungal crop parasites. Mounds of the termite Odontotermes obesus acted as (i) temperature and relative humidity (RH) 'stabilisers' showing dampened daily variation and (ii) 'extreme environments' exhibiting elevated RH and CO 2 levels, compared to the outside. Yet, internal temperatures exhibited seasonal dynamics as did daily and seasonal CO 2 levels. During in situ experiments under termite-excluded conditions within the mound, the growth of the crop parasite Pseudoxylaria was greater inside than outside the mound, i.e., Pseudoxylaria is 'termitariophilic'. Also, ex situ experiments on parasite isolates differing in growth rates and examined under controlled conditions in the absence of termites revealed a variable effect with fungal growth decreasing only under high CO 2 and low temperature conditions, reflecting the in situ parasite growth fluctuations. In essence, the parasite appears to be adapted to survive in the termite mound. Thus the mound microclimate does not inhibit the parasite but the dynamic environmental conditions of the mound affect its growth to varying extents. These results shed light on the impact of animal-engineered structures on parasite ecology, independent of any direct role of animal engineers. © 2017 Society for Applied Microbiology and John Wiley & Sons Ltd.

Bacterial density and community structure associated with aggregate size fractions of soil-feeding termite mounds.

Science.gov (United States)

Fall, S; Nazaret, S; Chotte, J L; Brauman, A

2004-08-01

The building and foraging activities of termites are known to modify soil characteristics such as the heterogeneity. In tropical savannas the impact of the activity of soil-feeding termites ( Cubitermes niokoloensis) has been shown to affect the properties of the soil at the aggregate level by creating new soil microenvironments (aggregate size fractions) [13]. These changes were investigated in greater depth by looking at the microbial density (AODC) and the genetic structure (automated rRNA intergenic spacer analysis: ARISA) of the communities in the different aggregate size fractions (i.e., coarse sand, fine sand, coarse silt, fine silt, and dispersible clays) separated from compartments (internal and external wall) of three Cubitermes niokoloensis mounds. The bacterial density of the mounds was significantly higher (1.5 to 3 times) than that of the surrounding soil. Within the aggregate size fractions, the termite building activity resulted in a significant increase in bacterial density within the coarser fractions (>20 mum). Multivariate analysis of the ARISA profiles revealed that the bacterial genetic structures of unfractionated soil and soil aggregate size fractions of the three mounds was noticeably different from the savanna soil used as a reference. Moreover, the microbial community associated with the different microenvironments in the three termite mounds revealed three distinct clusters formed by the aggregate size fractions of each mound. Except for the 2-20 mum fraction, these results suggest that the mound microbial genetic structure is more dependent upon microbial pool affiliation (the termite mound) than on the soil location (aggregate size fraction). The causes of the specificity of the microbial community structure of termite mound aggregate size fractions are discussed.

Biogeochemical study of termite mounds: a case study from Tummalapalle area of Andhra Pradesh, India.

Science.gov (United States)

Arveti, Nagaraju; Reginald, S; Kumar, K Sunil; Harinath, V; Sreedhar, Y

2012-04-01

Termite mounds are abundant components of Tummalapalle area of uranium mineralization of Cuddapah District of Andhra Pradesh, India. The systematic research has been carried out on the application of termite mound sampling to mineral exploration in this region. The distribution of chemical elements Cu, Pb, Zn, Ni, Co, Cr, Li, Rb, Sr, Ba, and U were studied both in termite soils and adjacent surface soils. Uranium accumulations were noticed in seven termite mounds ranging from 10 to 36 ppm. A biogeochemical parameter called "Biological Absorption Coefficient" of the termite mounds indicated the termite affected soils contained huge amounts of chemical elements than the adjacent soils.

Innovative rubble mound breakwaters for overtopping wave energy conversion

DEFF Research Database (Denmark)

Vicinanza, Diego; Contestabile, Pasquale; Nørgaard, Jørgen Quvang Harck

2014-01-01

to the sea through turbines. Wave loadings and average wave overtopping rate at the rear side of the rubble mound breakwater and in the front reservoir are discussed on the basis of physical 2-D model tests carried out at Aalborg University (DK). The experiments have been analyzed and compared with results...... from model tests and wave load design formulae by Nørgaard et al. (2013) for traditional rubble mound crown walls. The existing prediction methods seem unable to predict the hydraulic performances and loadings on the front reservoir and thus new prediction formulae are proposed based on the new...

Geochemical characteristics and early diagenesis of recent carbonate mound sediments in the Gulf of Cadiz

Science.gov (United States)

Hamaekers, Helen; Foubert, Anneleen; Wienberg, Claudia; Hebbeln, Dierk; Swennen, Rudy

2010-05-01

Cold-water coral carbonate mounds occur in patches along the continental margin of the North Atlantic Ocean, from northern Norway down to Mauretania. Recent research has been focused on carbonate mounds in the Gulf of Cadiz, especially along the Moroccan margin. The Pen Duick, the Renard and the Vernadsky carbonate mound provinces in the Gulf of Cádiz are only some of the mound provinces which have been the subject of several recent research projects (Foubert et al., 2008; Wienberg et al., 2009). No living scleractinians could be found on top of those carbonate mounds. During cruise 64PE284 of RV Pelagia, gravity cores have been taken through carbonate mounds in the Carbonate Mound Provinces (CMP) SE of Yuma mud volcano and N of Meknes mud volcano. These cores have been analysed by several methods such as Magnetic Susceptibility (MS), X-Ray Fluorescence (XRF), Inductive Coupled Plasma Optical Emission Spectroscopy (ICP-OES) and X-Ray Diffraction (XRD) to determine the geochemical characteristics of carbonate mounds, which can be used to quantify the effects of early diagenetic processes which may have altered the palaeo-environmental characteristics of the carbonate mounds. Dating has been done with 14C and U/Th methods pointing to mound growth phases being restricted to glacial periods. XRF and ICP-OES measurements give both qualitative and quantitative data of the chemical composition of the core. The main elements that have been analysed are Ca, Si, Fe, Sr, Al, K, Mg, Ti. According to the trend they follow, they can be devided in two groups, representative for the two encountered fraction types. These two fraction types (biogenic carbonate-rich fraction and terrigenous silicate-rich fraction) can be coupled to interglacial/glacial palaeo-environmental conditions. XRD measurements give an overview of the mineralogical composition of the cores. Thin sections, analysed by cathodeluminescence and classical optical petrography, and micro-CT scans are used to

Formation of Burial Mounds of the Sarmatian Time in the Basin of the Esaulovsky Aksai River

Directory of Open Access Journals (Sweden)

Elena A. Korobkova

2017-09-01

Full Text Available The article deals with the features of the formation of the burial mounds in the basin of the Esaulovsky Aksai river in the Sarmatian period. Most of the burial mounds of the region begin to form in the Bronze Age and continue to function throughout the early, middle and early late-Sarmatian periods. Most of the burial mounds were located on the watersheds and above-flood terraces of different levels. All of them are characterized by same principles of planning, barrows in them are stretched in a chain in the natural form of the terrace on which the burial mound was built. The territories developed already in the Bronze Age were chosen for creating mounds in the early Sarmatian period. The main part of them is concentrated on a small section landplot of the middle course of the Esaulovsky Aksai river. During the Middle Sarmatian period, the main part of barrows were also located in the middle course of the Esaulovsky Aksai, but represented 2 plots. One of these plots continues to use large burial mounds of the previous period, and the other one undergoes the creation of small barrow groups consisting usually of two-three barrows containing the richest burials of the region with the “classical” set of Middle Sarmatian features. In the late Sarmatian period, as well as in the previous stages of the Sarmatian culture, the burial mounds of the middle course of the Esaulovsky Aksai continue to be used, which cease to function no later than at the first half of the 3rd century AD. But the territory of actively used burial mounds changes, and the main complexes of that time concentrate in the upper reaches, where new burial mounds are created and continue to function until the end of the Sarmatian era.

Plutonium, americium, and uranium in blow-sand mounds of safety-shot sites at the Nevada Test Site and the Tonopah Test Range

International Nuclear Information System (INIS)

Essington, E.H.; Gilbert, R.O.; Wireman, D.L.; Brady, D.N.; Fowler, E.B.

1977-01-01

Blow-sand mounds or miniature sand dunes and mounds created by burrowing activities of animals were investigated by the Nevada Applied Ecology Group (NAEG) to determine the influence of mounds on plutonium, americium, and uranium distributions and inventories in areas of the Nevada Test Site and Tonopah Test Range. Those radioactive elements were added to the environment as a result of safety experiments of nuclear devices. Two studies were conducted. The first was to estimate the vertical distribution of americium in the blow-sand mounds and in the desert pavement surrounding the mounds. The second was to estimate the amount or concentration of the radioactive materials accumulated in the mound relative to the desert pavement. Five mound types were identified in which plutonium, americium, and uranium concentrations were measured: grass, shrub, complex, animal, and diffuse. The mount top (that portion above the surrounding land surface datum), the mound bottom (that portion below the mound to a depth of 5 cm below the surrounding land surface datum), and soil from the immediate area surrounding the mound were compared separately to determine if the radioactive elements had concentrated in the mounds. Results of the studies indicate that the mounds exhibit higher concentrations of plutonium, americium, and uranium than the immediate surrounding soil. The type of mound does not appear to have influenced the amount of the radioactive material found in the mound except for the animal mounds where the burrowing activities appear to have obliterated distribution patterns

Mound cyclone incinerator. Volume I. Description and performance

International Nuclear Information System (INIS)

Klingler, L.M.

1981-01-01

The Mound cyclone incinerator was developed to fill a need for a simple, relaible incinerator for volume reduction of dry solid waste contaminated with plutonium-238. Although the basic design of the incinerator is for batch burning of solid combustible waste, the incinerator has also been adapted to volume reduction of other waste forms. Specialized waste feeding equipment enables continuous burning of both solid and liquid waste, including full scintillation vials. Modifications to the incinerator offgas system enable burning of waste contaminated with isotopes other than plutonium-238. This document presents the design and performance characteristics of the Mound Cyclone Incinerator for incineration of both solid and liquid waste. Suggestions are included for adaptation of the incinerator to specialized waste materials

Mound Plant Environmental Monitoring Plan

International Nuclear Information System (INIS)

Bauer, L.R.; Tullis, M.S.; Paulick, R.P.; Roush, L.L.

1994-07-01

The purpose of this Environmental Monitoring Plan (EMP) is to describe the environmental monitoring and surveillance programs in place at Mound. The Plan is required by DOE Order 5400.1 (DOE, 1990). The programs described in the EMP are required by the DOE 5400 Order series and by the Environmental Regulatory Guide for Radiological Effluent Monitoring and Environment Surveillance (DOE 1991a), referred to as the Regulatory Guide throughout this Plan

Manipulation/Extraction of Adatom on a Mound: AG(111)

International Nuclear Information System (INIS)

Yildirim, H.

2004-01-01

We present results of an extensive study of the manipulation/extraction of an atom from a small Ag mound on Ag(111) using a Ag tip. Molecular dynamics (MD) and molecular static (MS) simulations were carried out using interaction potentials from the embedded atom method. In order to evaluate the manipulation capabilities of the tip, we first examine in detail the characteristics of the energy landscape in the absence of the tip. We find that the energy barrier for the extraction of the Ag atom, either through lateral (sliding downwards) or through vertical (climbing upwards) diffusion, to be about 0.3 eV. We show that the presence of the tip lowers the energy barrier for both lateral and vertical diffusion. We find that when the tip is above the edge of the mound (at a height of 2.43 A A from the Ag atom) the barrier for diffusion drops to 0.032 eV for lateral and 0.18 eV for vertical manipulation. We discuss the effect of the tip shape and geometry on the energetics, and present a detailed explanation of how the adatom is extracted from a mound in good agreement with experimental observations

Zonation of Microbial Communities by a Hydrothermal Mound in the Atlantis II Deep (the Red Sea)

KAUST Repository

Wang, Yong

2015-10-20

In deep-sea geothermal rift zones, the dispersal of hydrothermal fluids of moderately-high temperatures typically forms subseafloor mounds. Major mineral components of the crust covering the mound are barite and metal sulfides. As a result of the continental rifting along the Red Sea, metalliferous sediments accumulate on the seafloor of the Atlantis II Deep. In the present study, a barite crust was identified in a sediment core from the Atlantis II Deep, indicating the formation of a hydrothermal mound at the sampling site. Here, we examined how such a dense barite crust could affect the local environment and the distribution of microbial inhabitants. Our results demonstrate distinctive features of mineral components and microbial communities in the sediment layers separated by the barite crust. Within the mound, archaea accounted for 65% of the community. In contrast, the sediments above the barite boundary were overwhelmed by bacteria. The composition of microbial communities under the mound was similar to that in the sediments of the nearby Discovery Deep and marine cold seeps. This work reveals the zonation of microbial communities after the formation of the hydrothermal mound in the subsurface sediments of the rift basin.

Zonation of Microbial Communities by a Hydrothermal Mound in the Atlantis II Deep (the Red Sea.

Directory of Open Access Journals (Sweden)

Yong Wang

Full Text Available In deep-sea geothermal rift zones, the dispersal of hydrothermal fluids of moderately-high temperatures typically forms subseafloor mounds. Major mineral components of the crust covering the mound are barite and metal sulfides. As a result of the continental rifting along the Red Sea, metalliferous sediments accumulate on the seafloor of the Atlantis II Deep. In the present study, a barite crust was identified in a sediment core from the Atlantis II Deep, indicating the formation of a hydrothermal mound at the sampling site. Here, we examined how such a dense barite crust could affect the local environment and the distribution of microbial inhabitants. Our results demonstrate distinctive features of mineral components and microbial communities in the sediment layers separated by the barite crust. Within the mound, archaea accounted for 65% of the community. In contrast, the sediments above the barite boundary were overwhelmed by bacteria. The composition of microbial communities under the mound was similar to that in the sediments of the nearby Discovery Deep and marine cold seeps. This work reveals the zonation of microbial communities after the formation of the hydrothermal mound in the subsurface sediments of the rift basin.

Zonation of Microbial Communities by a Hydrothermal Mound in the Atlantis II Deep (the Red Sea)

KAUST Repository

Wang, Yong; Li, Jiang Tao; He, Li Sheng; Yang, Bo; Gao, Zhao Ming; Cao, Hui Luo; Batang, Zenon B.; Al-Suwailem, Abdulaziz M.; Qian, Pei-Yuan

2015-01-01

In deep-sea geothermal rift zones, the dispersal of hydrothermal fluids of moderately-high temperatures typically forms subseafloor mounds. Major mineral components of the crust covering the mound are barite and metal sulfides. As a result of the continental rifting along the Red Sea, metalliferous sediments accumulate on the seafloor of the Atlantis II Deep. In the present study, a barite crust was identified in a sediment core from the Atlantis II Deep, indicating the formation of a hydrothermal mound at the sampling site. Here, we examined how such a dense barite crust could affect the local environment and the distribution of microbial inhabitants. Our results demonstrate distinctive features of mineral components and microbial communities in the sediment layers separated by the barite crust. Within the mound, archaea accounted for 65% of the community. In contrast, the sediments above the barite boundary were overwhelmed by bacteria. The composition of microbial communities under the mound was similar to that in the sediments of the nearby Discovery Deep and marine cold seeps. This work reveals the zonation of microbial communities after the formation of the hydrothermal mound in the subsurface sediments of the rift basin.

Parallel evolution of mound-building and grass-feeding in Australian nasute termites.

Science.gov (United States)

Arab, Daej A; Namyatova, Anna; Evans, Theodore A; Cameron, Stephen L; Yeates, David K; Ho, Simon Y W; Lo, Nathan

2017-02-01

Termite mounds built by representatives of the family Termitidae are among the most spectacular constructions in the animal kingdom, reaching 6-8 m in height and housing millions of individuals. Although functional aspects of these structures are well studied, their evolutionary origins remain poorly understood. Australian representatives of the termitid subfamily Nasutitermitinae display a wide variety of nesting habits, making them an ideal group for investigating the evolution of mound building. Because they feed on a variety of substrates, they also provide an opportunity to illuminate the evolution of termite diets. Here, we investigate the evolution of termitid mound building and diet, through a comprehensive molecular phylogenetic analysis of Australian Nasutitermitinae. Molecular dating analysis indicates that the subfamily has colonized Australia on three occasions over the past approximately 20 Myr. Ancestral-state reconstruction showed that mound building arose on multiple occasions and from diverse ancestral nesting habits, including arboreal and wood or soil nesting. Grass feeding appears to have evolved from wood feeding via ancestors that fed on both wood and leaf litter. Our results underscore the adaptability of termites to ancient environmental change, and provide novel examples of parallel evolution of extended phenotypes. © 2017 The Author(s).

Sulphur Extraction at Bryan Mound

Energy Technology Data Exchange (ETDEWEB)

Kirby, Carolyn L [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Lord, Anna C. Snider [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States)

2015-08-01

The Bryan Mound caprock was subjected to extens ive sulphur mining prior to the development of the Strategic Petroleum Reserve. Undoubtedl y, the mining has modified the caprock integrity. Cavern wells at Bryan Mound have been subject to a host of well integr ity concerns with many likely compromised by the cavernous capro ck, surrounding corrosive environment (H ₂ SO ₄ ), and associated elevated residual temperatures al l of which are a product of the mining activities. The intent of this study was to understand the sulphur mining process and how the mining has affected the stability of the caprock and how the compromised caprock has influenced the integrity of the cavern wells. After an extensiv e search to collect pert inent information through state agencies, literature sear ches, and the Sandia SPR librar y, a better understanding of the caprock can be inferred from the knowledge gaine d. Specifically, the discovery of the original ore reserve map goes a long way towards modeling caprock stability. In addition the gained knowledge of sulphur mining - subs idence, superheated corrosive wa ters, and caprock collapse - helps to better predict the post mi ning effects on wellbore integrity. This page intentionally left blank

Pre-Columbian landscape impact and agriculture in the Monumental Mound region of the Llanos de Moxos, lowland Bolivia

Science.gov (United States)

Whitney, Bronwen S.; Dickau, Ruth; Mayle, Francis E.; Soto, J. Daniel; Iriarte, José

2013-09-01

We present a multiproxy study of land use by a pre-Columbian earth mounds culture in the Bolivian Amazon. The Monumental Mounds Region (MMR) is an archaeological sub-region characterized by hundreds of pre-Columbian habitation mounds associated with a complex network of canals and causeways, and situated in the forest-savanna mosaic of the Llanos de Moxos. Pollen, phytolith, and charcoal analyses were performed on a sediment core from a large lake (14 km2), Laguna San José (14°56.97'S, 64°29.70'W). We found evidence of high levels of anthropogenic burning from AD 400 to AD 1280, corroborating dated occupation layers in two nearby excavated habitation mounds. The charcoal decline pre-dates the arrival of Europeans by at least 100 yr, and challenges the notion that the mounds culture declined because of European colonization. We show that the surrounding savanna soils were sufficiently fertile to support crops, and the presence of maize throughout the record shows that the area was continuously cultivated despite land-use change at the end of the earth mounds culture. We suggest that burning was largely confined to the savannas, rather than forests, and that pre-Columbian deforestation was localized to the vicinity of individual habitation mounds, whereas the inter-mound areas remained largely forested.

Estimating total 239240Pu in blow-sand mounds of two safety-shot sites

International Nuclear Information System (INIS)

Gilbert, R.O.; Essington, E.H.

1977-01-01

A study for estimating the total amount (inventory) of 239 240 Pu in blow-sand mounds at two safety-shot sites (Area 13-Project 57 on the Nellis Air Force Base and Clean Slate 3 on the Tonopah Test Range in Nevada) is described. The total amount in blow-sand mounds at these two sites is estimated to be 5.8 +- 1.3 (total +- standard error) and 10.6 +- 2.5 curies, respectively. The total 239 240 Pu in mounds plus desert pavement areas, both to a depth of 5 cm below desert pavement level, is estimated to be 39 +- 5.7 curies at the Project 57 site and 36 +- 4.8 curies at Clean Slate 3. These estimates are compared with the somewhat higher estimates of 46 +- 9 and 37 +- 5.4 curies reported that pertain to only the top 5 cm of mounds and desert pavement. The possibility is discussed that these differences are due to sampling variability arising from the skewed nature of plutonium concentrations, particularly near ground zero

Slumping of brine mounds : bounds on behaviour

NARCIS (Netherlands)

Philips, J.R.; Duijn, van C.J.

1996-01-01

Two modifications of the approximate analysis of interface motion during two-fluid density-driven flows of De Josselin de Jong (Proc. Euromech., 143: 75–82, 1981) are applied to the slumping of finite two-dimensional and axisymmetric brine mounds. Both lead to simple similarity solutions. One

POTENTIAL IMPACT OF BLENDING RESIDUAL SOLIDS FROM TANKS 18/19 MOUNDS WITH TANK 7 OPERATIONS

Energy Technology Data Exchange (ETDEWEB)

Eibling, R; Erich Hansen, E; Bradley Pickenheim, B

2007-03-29

High level waste tanks 18F and 19F have residual mounds of waste which may require removal before the tanks can be closed. Conventional slurry pump technology, previously used for waste removal and tank cleaning, has been incapable of removing theses mounds from tanks 18F and 19F. A mechanical cleaning method has been identified that is potentially capable of removing and transferring the mound material to tank 7F for incorporation in a sludge batch for eventual disposal in high level waste glass by the Defense Waste Processing Facility. The Savannah River National Laboratory has been requested to evaluate whether the material transferred from tanks 18F/19F by the mechanical cleaning technology can later be suspended in Tank 7F by conventional slurry pumps after mixing with high level waste sludge. The proposed mechanical cleaning process for removing the waste mounds from tanks 18 and 19 may utilize a high pressure water jet-eductor that creates a vacuum to mobilize solids. The high pressure jet is also used to transport the suspended solids. The jet-eductor system will be mounted on a mechanical crawler for movement around the bottom of tanks 18 and 19. Based on physical chemical property testing of the jet-eductor system processed IE-95 zeolite and size-reduced IE-95 zeolite, the following conclusions were made: (1) The jet-eductor system processed zeolite has a mean and median particle size (volume basis) of 115.4 and 43.3 microns in water. Preferential settling of these large particles is likely. (2) The jet-eductor system processed zeolite rapidly generates settled solid yield stresses in excess of 11,000 Pascals in caustic supernates and will not be easily retrieved from Tank 7 with the existing slurry pump technology. (3) Settled size-reduced IE-95 zeolite (less than 38 microns) in caustic supernate does not generate yield stresses in excess of 600 Pascals in less than 30 days. (4) Preferential settling of size-reduced zeolite is a function of the amount of

Application of 5700.6B, quality assurance, to ES and H programs: Mound's approach and results

International Nuclear Information System (INIS)

Edling, D.A.

1985-01-01

Quality Assurance has always been integral to Mound's production and support operations. Weapons material and other designated material for WR programs are processed and controlled per the requirements of DOE/AL Quality Control Policy QC-1. Mound's non-WR activities, such as siting, design, construction, testing, operation, maintenance, development and production of materials, components, and systems, and acquisition of research and technology data are to be processed and controlled per the requirements of AL Order 5700.6. This paper presents an overview of the entire Quality Assurance Program at Mound and specifically addresses Mound's formal application of Quality Assurance to our comprehensive Environmental, Safety and Health (ES and H) Programs. 4 figures, 1 table

Do Epigeal Termite Mounds Increase the Diversity of Plant Habitats in a Tropical Rain Forest in Peninsular Malaysia?

Science.gov (United States)

Beaudrot, Lydia; Du, Yanjun; Rahman Kassim, Abdul; Rejmánek, Marcel; Harrison, Rhett D.

2011-01-01

The extent to which environmental heterogeneity can account for tree species coexistence in diverse ecosystems, such as tropical rainforests, is hotly debated, although the importance of spatial variability in contributing to species co-existence is well recognized. Termites contribute to the micro-topographical and nutrient spatial heterogeneity of tropical forests. We therefore investigated whether epigeal termite mounds could contribute to the coexistence of plant species within a 50 ha plot at Pasoh Forest Reserve, Malaysia. Overall, stem density was significantly higher on mounds than in their immediate surroundings, but tree species diversity was significantly lower. Canonical correspondence analysis showed that location on or off mounds significantly influenced species distribution when stems were characterized by basal area. Like studies of termite mounds in other ecosystems, our results suggest that epigeal termite mounds provide a specific microhabitat for the enhanced growth and survival of certain species in these species-rich tropical forests. However, the extent to which epigeal termite mounds facilitate species coexistence warrants further investigation. PMID:21625558

Design And Construction Of Mounds For Breakwaters And Coastal Protection

DEFF Research Database (Denmark)

Burcharth, Hans F.; Barends, F.B.J.; Brebner, A.

Design and construction of mound breakwaters has during the last 5 to 10 years entered a new era. The major reason for that is the realization of problems encountered as it became necessary to erect port structures on more exposed shores and in deeper waters. As a consequence of that the P.I.A.N....... they were exposed to. The following sections discuss the stability of mound breakwaters, reasons for failure and design principles. A number of major failures are mentioned specifically. In each case an attempt has been made to explore and explain the reason for the failure....

2014 Strategic Petroleum Reserve Bryan Mound Well Integrity Grading Report.

Energy Technology Data Exchange (ETDEWEB)

Roberts, Barry L; Lord, David; Lord, Anna C. Snider; Bettin, Giorgia; Sobolik, Steven R.; Rudeen, David Keith; Eldredge, Lisa L. (FFPO); Wynn, Karen (FFPO); Checkai, Dean (FFPO); Osborne, Gerad (FFPO); Moore, Darryl (FFPO)

2015-04-01

This report summarizes the work performed in the prioritization of cavern access wells for remediation and monitoring at the Bryan Mound Strategic Petroleum Reserve site. The grading included consideration of all 47 wells at the Bryan Mound site, with each well receiving a separate grade for remediation and monitoring. Numerous factors affecting well integrity were incorporated into the grading including casing survey results, cavern pressure history, results from geomechanical simulations, and site geologic factors. The factors and grading framework used here are the same as those used in developing similar well remediation and monitoring priorities at the Big Hill Strategic Petroleum Reserve Site.

Shrub mound formation and stability on semi-arid slopes in the Northern Negev Desert of Israel: A field and simulation study

NARCIS (Netherlands)

Buis, E.; Temme, A.J.A.M.; Veldkamp, A.; Boeken, B.; Jongmans, A.G.; Breemen, van N.; Schoorl, J.M.

2010-01-01

In semi-arid areas vegetation is scarce and often dominated by individual shrubs on raised mounds. The processes of formation of these mounds are diverse and still debated. Often, shrub mound formation is directly related to the formation of vegetation patterns, thereby assuming that shrub mound

Comparison of two carbonate mound sequences in the Lower Ordovician El Paso Formation, west Texas and southern New Mexico

Energy Technology Data Exchange (ETDEWEB)

Clemons, R.E.

1985-01-01

The El Paso Formations consists of four members, in ascending order: Hitt Canyon, Jose McKelligon and Padre. Mounds in the McKelligon Member exposed in the southern Franklin Mountains were described by Toomey (1970). Most of these mounds are small but one large one is 5.8 m thick and about 13.7 m long in outcrop. The mound rock is chiefly bioclastic wackestone with minor packstone and boundstone. The varied fauna contains echinoderms, sponges and spicules, gastropods, trilobites, digitate algae, Nuia, Girvanella, Pulchrilamina, Calathium, and minor brachiopods and cephalopods. Intraclastic, bioclastic grainstone fills channels cut in the mounds. Similar, but smaller and less spectacular mounds occur in the McKelligon Member in the Florida, Big Hatchet, and Caballo Mountains, Lone Mountain, Cooke's Range, and elsewhere in southwestern New Mexico. A second type of mound is common in the upper part of the Hitt Canyon Member in the Cooke's Range, Red Hills, Caballo and Big Hatchet Mountains. These mounds also are typically small but one in the Red Hills is 13.7 m thick and about 30 m long in outcrop. The mound complex is about 75-80% SH-C and LLH-C stromatolite boundstone and bioclastic wackestone. The remaining 20-25% is bioclastic packstone and grainstone between the SH-C stromatolites and filling channels cut in the mound complex. The limited fauna contains small fragments of echinoderms, gastropods, trilobites, spicules, and Nuia.

Elimination of Coptotermes lacteus (Froggatt) (Blattodea: Rhinotemitidae) Colonies Using Bistrifluron Bait Applied through In-Ground Bait Stations Surrounding Mounds.

Science.gov (United States)

Webb, Garry

2017-09-12

The efficacy of bistrifluron termite bait was evaluated using in-ground bait stations placed around Coptotermes lacteus mounds in south-eastern Australia during late summer and autumn (late February to late May 2012). Four in-ground bait stations containing timber billets were placed around each of twenty mounds. Once sufficient numbers of in-ground stations were infested by termites, mounds were assigned to one of four groups (one, two, three or four 120 g bait canisters or 120 to 480 g bait in total per mound) and bait canisters installed. One mound, nominally assigned treatment with two canisters ultimately had no termite interception in any of the four in-ground stations and not treated. Eighteen of the remaining 19 colonies were eliminated by 12 weeks after bait placement, irrespective of bait quantity removed (range 43 to 480 g). Measures of colony decline-mound repair capability and internal core temperature-did not accurately reflect the colony decline, as untreated colonies showed a similar pattern of decline in both repair capability and internal mound core temperature. However, during the ensuing spring-summer period, capacity to repair the mound was restored in untreated colonies and the internal core temperature profile was similar to the previous spring-summer period which indicated that these untreated colonies remained healthy.

Quantum deletion: Beyond the no-deletion principle

International Nuclear Information System (INIS)

Adhikari, Satyabrata

2005-01-01

Suppose we are given two identical copies of an unknown quantum state and we wish to delete one copy from among the given two copies. The quantum no-deletion principle restricts us from perfectly deleting a copy but it does not prohibit us from deleting a copy approximately. Here we construct two types of a 'universal quantum deletion machine' which approximately deletes a copy such that the fidelity of deletion does not depend on the input state. The two types of universal quantum deletion machines are (1) a conventional deletion machine described by one unitary operator and (2) a modified deletion machine described by two unitary operators. Here it is shown that the modified deletion machine deletes a qubit with fidelity 3/4, which is the maximum limit for deleting an unknown quantum state. In addition to this we also show that the modified deletion machine retains the qubit in the first mode with average fidelity 0.77 (approx.) which is slightly greater than the fidelity of measurement for two given identical states, showing how precisely one can determine its state [S. Massar and S. Popescu, Phys. Rev. Lett. 74, 1259 (1995)]. We also show that the deletion machine itself is input state independent, i.e., the information is not hidden in the deleting machine, and hence we can delete the information completely from the deletion machine

Safe shutdown of Defense Program facilities at the Mound Plant, Miamisburg, Ohio

International Nuclear Information System (INIS)

Anderson, H.F.; Bantz, P.D.; Luthy, D.F.

1996-01-01

The Mound Plant was one of several production sites in the US Department of Energy's Defense Programs (DP) Weapons Complex. As a result of the downsizing of the weapons program, certain operations at Mound are being transferred to other DOE sites and the DP buildings at Mound are being shutdown. The objectives of the program are to reduce the hazardous and financial liabilities to DOE and to foster the reuse of facilities for economic development. The overall program is described. The process began with the categorization of excess DP buildings into three groups depending on their anticipated future use. The draft DOE/EM-60 Acceptance Criteria were used to develop a detailed shutdown checklist as the foundation of the process. The overall program budget, schedule, ad options for disposition of materials and components is presented. Accomplishments in FY94 and FY95 are described. By the end of FY95, all excess energetic materials and components, all excess chemicals (from non-radiation areas) and significant amounts of radioactive materials have been removed from the site. By the end of FY95, 47 of the 72 buildings in the program have been taken through all ten of the draft EM-60 acceptance criteria. Lessons learned, based on experience at Mound to date, are summarized

The beneficial role of rubble mound coastal structures on seawater oxygenation

Directory of Open Access Journals (Sweden)

E. I. Daniil

2000-10-01

Full Text Available The beneficial role of rubble mound coastal structures on oxygenation under the effect of waves is discussed, based on analytical considerations and experimental data from laboratory experiments with permeable and impermeable structures. Significant oxygenation of the wave-protected area was observed as a result of horizontal transport through the permeable structure. A two-cell model describing the transport of dissolved oxygen (DO near a rubble mound breakwater structure was developed and used for the determination of the oxygen transfer coefficients from the experimental data. Oxygen transfer through the air–water interface is considered a source term in the transport equation and the oxygen flux through the structure is taken into account. The mass transport equations for both sides of the structure are solved analytically in terms of time evolution of DO concentration. The behaviour of the solution is illustrated for three different characteristic cases of initial conditions. The oxygen transfer through the air-water interface in the wave-influenced area increases the DO content in the area; the resulting oxygen flux through the structure is discussed. The analytical results depend on the initial conditions, the oxygen transfer coefficient and the exchange flow rate through the structure. Experiments with impermeable structures show that air water oxygen transfer in the harbour area is negligible in the absence of waves. In addition the ratio of the horizontal DO flux to the vertical flux into the seaward side tends towards a constant value, independent of the initial conditions.Key words: Oceanography: physical (air-sea interactions; surface waves and tides

Deletion 22q13.3 syndrome

Directory of Open Access Journals (Sweden)

Phelan Mary C

2008-05-01

Full Text Available Abstract The deletion 22q13.3 syndrome (deletion 22q13 syndrome or Phelan-McDermid syndrome is a chromosome microdeletion syndrome characterized by neonatal hypotonia, global developmental delay, normal to accelerated growth, absent to severely delayed speech, and minor dysmorphic features. The deletion occurs with equal frequency in males and females and has been reported in mosaic and non-mosaic forms. Due to lack of clinical recognition and often insufficient laboratory testing, the syndrome is under-diagnosed and its true incidence remains unknown. Common physical traits include long eye lashes, large or unusual ears, relatively large hands, dysplastic toenails, full brow, dolicocephaly, full cheeks, bulbous nose, and pointed chin. Behavior is autistic-like with decreased perception of pain and habitual chewing or mouthing. The loss of 22q13.3 can result from simple deletion, translocation, ring chromosome formation and less common structural changes affecting the long arm of chromosome 22, specifically the region containing the SHANK3 gene. The diagnosis of deletion 22q13 syndrome should be considered in all cases of hypotonia of unknown etiology and in individuals with absent speech. Although the deletion can sometimes be detected by high resolution chromosome analysis, fluorescence in situ hybridization (FISH or array comparative genomic hybridization (CGH is recommended for confirmation. Differential diagnosis includes syndromes associated with hypotonia, developmental delay, speech delay and/or autistic-like affect (Prader-Willi, Angelman, Williams, Smith-Magenis, Fragile X, Sotos, FG, trichorhinophalangeal and velocardiofacial syndromes, autism spectrum disorders, cerebral palsy. Genetic counseling is recommended and parental laboratory studies should be considered to identify cryptic rearrangements and detect parental mosaicism. Prenatal diagnosis should be offered for future pregnancies in those families with inherited rearrangements

A Preliminary Study on Termite Mound Soil as Agricultural Soil for Crop Production in South West, Nigeria

Directory of Open Access Journals (Sweden)

O. E. Omofunmi

2017-08-01

Full Text Available It is a popular belief of the people in the Southern region of Nigeria that a land infested with termite usually brings prosperity to the land owner regardless of the type of its usage. Therefore, the present study assessed termite mounds soil properties which are important to crop production. Two soil samples were collected and their physical and chemical properties determined in accordance with American Public Health Association (APHA, 2005. Data were analyzed using descriptive statistics. The textural classes showed that the termite mound soil was sand clay loam while the surrounding soil was clay loam. This results revealed that: Termites’ activity induced significant chemical changes in the soil possible due to the materials used in building their nests. There was increase the concentrations of nitrogen, phosphorus, Potassium, calcium and magnesium higher in the termite’s mounds, while the micro-nutrients (zinc, iron and copper except sulphur and manganese lower in the soil infested by termites. There were significant differences (p ≥ 0.05 between termite mound soil and surrounding soil. It showed highly positive correlation between termite mound and surrounding soil (r= 0.92. The concentration of the soil properties around the termite mound are within the range of soil nutrients suitable for arable crop production. Termite mound soil is recommended to be used as an alternative to local farmers who cannot afford to buy expensive inorganic fertilizers.

Elimination of Coptotermes lacteus (Froggatt (Blattodea: Rhinotemitidae Colonies Using Bistrifluron Bait Applied through In-Ground Bait Stations Surrounding Mounds

Directory of Open Access Journals (Sweden)

Garry Webb

2017-09-01

Full Text Available The efficacy of bistrifluron termite bait was evaluated using in-ground bait stations placed around Coptotermes lacteus mounds in south-eastern Australia during late summer and autumn (late February to late May 2012. Four in-ground bait stations containing timber billets were placed around each of twenty mounds. Once sufficient numbers of in-ground stations were infested by termites, mounds were assigned to one of four groups (one, two, three or four 120 g bait canisters or 120 to 480 g bait in total per mound and bait canisters installed. One mound, nominally assigned treatment with two canisters ultimately had no termite interception in any of the four in-ground stations and not treated. Eighteen of the remaining 19 colonies were eliminated by 12 weeks after bait placement, irrespective of bait quantity removed (range 43 to 480 g. Measures of colony decline—mound repair capability and internal core temperature—did not accurately reflect the colony decline, as untreated colonies showed a similar pattern of decline in both repair capability and internal mound core temperature. However, during the ensuing spring–summer period, capacity to repair the mound was restored in untreated colonies and the internal core temperature profile was similar to the previous spring–summer period which indicated that these untreated colonies remained healthy.

Physiological and biogeochemical traits of bleaching and recovery in the mounding species of coral Porites lobata: implications for resilience in mounding corals.

Directory of Open Access Journals (Sweden)

Stephen J Levas

Full Text Available Mounding corals survive bleaching events in greater numbers than branching corals. However, no study to date has determined the underlying physiological and biogeochemical trait(s that are responsible for mounding coral holobiont resilience to bleaching. Furthermore, the potential of dissolved organic carbon (DOC as a source of fixed carbon to bleached corals has never been determined. Here, Porites lobata corals were experimentally bleached for 23 days and then allowed to recover for 0, 1, 5, and 11 months. At each recovery interval a suite of analyses were performed to assess their recovery (photosynthesis, respiration, chlorophyll a, energy reserves, tissue biomass, calcification, δ(13C of the skeletal, δ(13C, and δ(15N of the animal host and endosymbiont fractions. Furthermore, at 0 months of recovery, the assimilation of photosynthetically acquired and zooplankton-feeding acquired carbon into the animal host, endosymbiont, skeleton, and coral-mediated DOC were measured via (13C-pulse-chase labeling. During the first month of recovery, energy reserves and tissue biomass in bleached corals were maintained despite reductions in chlorophyll a, photosynthesis, and the assimilation of photosynthetically fixed carbon. At the same time, P. lobata corals catabolized carbon acquired from zooplankton and seemed to take up DOC as a source of fixed carbon. All variables that were negatively affected by bleaching recovered within 5 to 11 months. Thus, bleaching resilience in the mounding coral P. lobata is driven by its ability to actively catabolize zooplankton-acquired carbon and seemingly utilize DOC as a significant fixed carbon source, facilitating the maintenance of energy reserves and tissue biomass. With the frequency and intensity of bleaching events expected to increase over the next century, coral diversity on future reefs may favor not only mounding morphologies but species like P. lobata, which have the ability to utilize heterotrophic

Efficiency of fipronil in the control of the mound-building termite, Nasutitermes sp. (Isoptera: Termitidae) in sugarcane

OpenAIRE

Melo Fo, Reinaldo M.; Veiga, Antônio F.S.L.

1998-01-01

The efficiency of fipronil was evaluated in field conditions at different dosages and two formulations, against Nasutitermes sp. (isopteran: Termitidae) in sugarcane (Sccharum sp.). Termite mounds were indentified, measured and drilled until cellulosic chamber to allow insecticide application. Nine treatments were tested with ten replications in a completely randomized design and each termite mound considered as an experimental unit. after 50 days the termite mounds were opened and the mortal...

A methodology for the analysis of damage progression in rubble mound breakwaters

OpenAIRE

Campos Duque, Álvaro

2016-01-01

Nowadays, risk based designs as well as reliable rehabilitation and maintenance strategies are essential when dealing with coastal structures. In this sense, the probability of failure due to instability of the armour layer is one of the main issues in rubble mound breakwaters, and so is improving the knowledge on its deterioration rate. Both stability and damage progression on rubble mound breakwaters have been studied for more than 80 years, using different approaches, under regular/irregul...

Antarctic Mirabilite Mounds as Mars Analogs: The Lewis Cliffs Ice Tongue Revisited

Science.gov (United States)

Socki, Richard A.; Sun, Tao; Niles, Paul B.; Harvey, Ralph P.; Bish, David L.; Tonui, Eric

2012-01-01

It has been proposed, based on geomorphic and geochemical arguments, that subsurface water has played an important role in the history of water on the planet Mars [1]. Subsurface water, if present, could provide a protected and long lived environment for potential life. Discovery of gullies [2] and recurring slopes [3] on Mars suggest the potential for subsurface liquid water or brines. Recent attention has also focused on small (the mid to high latitudes on the surface of Mars which may be caused by eruptions of subsurface fluids [4, 5]. We have identified massive but highly localized Na-sulfate deposits (mirabilite mounds, Na2SO4 .10H2O) that may be derived from subsurface fluids and may provide insight into the processes associated with subsurface fluids on Mars. The mounds are found on the end moraine of the Lewis Cliffs Ice Tongue (LCIT) [6] in the Transantarctic Mountains, Antarctica, and are potential terrestrial analogs for mounds observed on the martian surface. The following characteristics distinguish LCIT evaporite mounds from other evaporite mounds found in Antarctic coastal environments and/or the McMurdo Dry Valleys: (1) much greater distance from the open ocean (approx.500 km); (2) higher elevation (approx.2200 meters); and (3) colder average annual temperature (average annual temperature = -30 C for LCIT [7] vs. 20 C at sea level in the McMurdo region [8]. Furthermore, the recent detection of subsurface water ice (inferred as debris-covered glacial ice) by the Mars Reconnaissance Orbiter [9] supports the use of an Antarctic glacial environment, particularly with respect to the mirabilite deposits described in this work, as an ideal terrestrial analog for understanding the geochemistry associated with near-surface martian processes. S and O isotopic compositions.

Implementation of linear bias corrections for calorimeters at Mound

International Nuclear Information System (INIS)

Barnett, T.M.

1993-01-01

In the past, Mound has generally made relative bias corrections as part of the calibration of individual calorimeters. The correction made was the same over the entire operating range of the calorimeter, regardless of the magnitude of the range. Recently, an investigation was performed to check the relevancy of using linear bias corrections to calibrate the calorimeters. The bias is obtained by measuring calibrated plutonium and/or electrical heat standards over the operating range of the calorimeter. The bias correction is then calculated using a simple least squares fit (y = mx + b) of the bias in milliwatts over the operating range of the calorimeter in watts. The equation used is B i = B 0 + (B w * W m ), where B i is the bias at any given power in milliwatts, B 0 is the intercept (absolute bias in milliwatts), B w is the slope (relative bias in milliwatts per watt), and W m is the measured power in watts. The results of the study showed a decrease in the random error of bias corrected data for most of the calorimeters which are operated over a large wattage range (greater than an order of magnitude). The linear technique for bias correction has been fully implemented at Mound and has been included in the Technical Manual, ''A Measurement Control Program for Radiometric Calorimeters at Mound'' (MD-21900)

A Preliminary Study on Elimination of Colonies of the Mound Building Termite Macrotermes gilvus (Hagen Using a Chlorfluazuron Termite Bait in the Philippines

Directory of Open Access Journals (Sweden)

Partho Dhang

2011-11-01

Full Text Available The effectiveness of a chlorfluazuron termite bait in eliminating colonies of the termite species Macrotermes gilvus (Hagen was evaluated under field conditions. Three active termite mounds were chosen for this study, two acted as test mounds and the other as the control. Four In-Ground Stations (IGS were installed around each mound. Interception occurred almost immediately in all the stations, which were subsequently baited. The control mound was fed a bait matrix lacking the active ingredient. Stations were re-baited every 2 weeks for 10–12 weeks until bait consumption ceased in the test mounds. The mounds were left undisturbed for four more weeks before being destructively sampled. The desiccated remains of workers, soldiers, late instars and queen were found upon sampling the treated mounds. A few live termites were located in one treated mound but were darkly pigmented indicating bait consumption. The control mound remained healthy and did not show any visible sign of negative impact. The bait successfully suppressed or eliminated both M. gilvus colonies within 16 weeks from commencement of feeding.

Modelling effects of tree population dynamics, tree throw and pit-mound formation/diffusion on microtopography over time in different forest settings

Science.gov (United States)

Martin, Y. E.; Johnson, E. A.; Gallaway, J.; Chaikina, O.

2011-12-01

Herein we conduct a followup investigation to an earlier research project in which we developed a numerical model of tree population dynamics, tree throw, and sediment transport associated with the formation of pit-mound features for Hawk Creek watershed, Canadian Rockies (Gallaway et al., 2009). We extend this earlier work by exploring the most appropriate transport relations to simulate the diffusion over time of newly-formed pit-pound features due to tree throw. We combine our earlier model with a landscape development model that can incorporate these diffusive transport relations. Using these combined models, changes in hillslope microtopography over time associated with the formation of pit-mound features and their decay will be investigated. The following ideas have motivated this particular study: (i) Rates of pit-mound degradation remain a source of almost complete speculation, as there is almost no long-term information on process rates. Therefore, we will attempt to tackle the issue of pit-mound degradation in a methodical way that can guide future field studies; (ii) The degree of visible pit-mound topography at any point in time on the landscape is a joint function of the rate of formation of new pit-mound features due to tree death/topple and their magnitude vs. the rate of decay of pit-mound features. An example of one interesting observation that arises is the following: it appears that pit-mound topography is often more pronounced in some eastern North American forests vs. field sites along the eastern slopes of the Canadian Rockies. Why is this the case? Our investigation begins by considering whether pit-mound decay might occur by linear or nonlinear diffusion. What differences might arise depending on which diffusive approach is adopted? What is the magnitude of transport rates associated with these possible forms of transport relations? We explore linear and nonlinear diffusion at varying rates and for different sizes of pit-mound pairs using a

Differences between bacterial communities in the gut of a soil-feeding termite (Cubitermes niokoloensis) and its mounds

OpenAIRE

Fall, Saliou; Hamelin, J.; Ndiaye, Farma; Assigbetse, Komi; Aragno, M.; Chotte, Jean-Luc; Brauman, Alain

2007-01-01

In tropical ecosystems, termite mound soils constitute an important soil compartment covering around 10% of African soils. Previous studies have shown (S. Fall, S. Nazaret, J. L. Chotte, and A. Brauman, Microb. Ecol. 28:191-199, 2004) that the bacterial genetic structure of the mounds of soil-feeding termites (Cubitermes niokoloensis) is different from that of their surrounding soil. The aim of this study was to characterize the specificity of bacterial communities within mounds with respect ...

Diversity And Abundance Of Deep-Water Coral Mounds In The Straits Of Florida: A Result of Adaptability To Local Environments?

Science.gov (United States)

Correa, T. B.; Grasmueck, M.; Eberli, G.; Viggiano, D. A.; Rosenberg, A.; Reed, J. K.

2007-12-01

To improve the understanding of the Florida-Bahamas deep-water coral mound ecosystem, Autonomous Underwater Vehicle (AUV) surveys were conducted on five coral mound fields throughout the Straits of Florida (three sites at the base of slope of Great Bahama Bank (GBB), one in the middle of the Straits (MS) and one at the base of the Miami Terrace (MT)) in water depths of 590 to 860 m. The AUV provides high-resolution bathymetric maps, sub-bottom profiles and oceanographic data. The AUV survey sites were subsequently groundtruthed via sample collection and video transects, using the Johnson Sealink submersible. Contrary to previous surveys, we found a high diversity in coral mound morphology between sites separated by 15 to 80 km. The MT site is characterized by sinusoidal coral mound ridges, while the MS site contains densely clustered small coral mounds. Meanwhile, mounds of the GBB region are better developed, with some individual mounds reaching up to 90 m in height. Benthic coverage of live corals also differs between sites; the GBB sites are characterized by mounds densely covered by large thickets of live corals, while small thickets of mostly dead corals dominate the MT and MS sites. Several environmental factors may explain these differences. For example, bottom current patterns change between sites. The MT and the MS sites have a unidirectional regime (southward or northward flow, respectively), whereas the GBB sites have a tidal current regime. Sedimentation patterns as depicted by sub-bottom profiles also vary between the sites; coral mounds in the GBB area appear to receive higher sediment input, which can significantly enhance mound growth rates as the reef framework baffles and traps mobile sediments. However, coral mounds that cannot keep-up with the sedimentation rate are buried. Therefore, in the high sedimentation areas of GBB, flourishing live coral mounds are limited to elevated positions (i.e. plateaus, ridges crests) where sediment accumulation

Fast detection of deletion breakpoints using quantitative PCR

Directory of Open Access Journals (Sweden)

Gulshara Abildinova

2016-01-01

Full Text Available Abstract The routine detection of large and medium copy number variants (CNVs is well established. Hemizygotic deletions or duplications in the large Duchenne muscular dystrophy DMD gene responsible for Duchenne and Becker muscular dystrophies are routinely identified using multiple ligation probe amplification and array-based comparative genomic hybridization. These methods only map deleted or duplicated exons, without providing the exact location of breakpoints. Commonly used methods for the detection of CNV breakpoints include long-range PCR and primer walking, their success being limited by the deletion size, GC content and presence of DNA repeats. Here, we present a strategy for detecting the breakpoints of medium and large CNVs regardless of their size. The hemizygous deletion of exons 45-50 in the DMD gene and the large autosomal heterozygous PARK2 deletion were used to demonstrate the workflow that relies on real-time quantitative PCR to narrow down the deletion region and Sanger sequencing for breakpoint confirmation. The strategy is fast, reliable and cost-efficient, making it amenable to widespread use in genetic laboratories.

Wave Induced Loading and Stability of Rubble Mound Breakwaters

DEFF Research Database (Denmark)

Hald, Tue

conducting model tests very large variability in e.g. the degree of stability is observed. This background motivated the investigations conducted in the present study. The objective was to investigate and clarify which wave parameters are important for the hydraulic stability of the armour layer on typical...... rubble mound breakwaters. Furthermore, it was intended to quantify the influence on the stability of each parameter. Focus was put on the wave induced loading on single armour stones and the relation to the stability. Based on existing literature the state of physical understanding of the processes...... and the stability were investigated. At Aalborg University model tests with an idealized model of a rubble mound breakwater were conducted and formed the basis for a detailed parametric investigation of the wave induced loading. Based on analyses of the experimental data wave-force models were derived containing...

Slope Stability Estimation of the Kościuszko Mound in Cracow

Science.gov (United States)

Wrana, Bogumił; Pietrzak, Natalia

2015-06-01

In the paper, the slope stability problem of the Kościuszko Mound in Cracow, Poland is considered. The slope stability analysis was performed using Plaxis FEM program. The outer surface of the mound has complex geometry. The slope of the cone is not uniform in all directions, on the surface of the cone are pedestrian paths. Due to its complicated geometry it was impossible to do computing by Plaxis input pre-procesor. The initial element mesh was generated using Autodesk Autocad 3D and next it was updated by Plaxis program. The soil parameters were adopted in accordance with the detailed geological soil testing performed in 2012. Calculating model includes geogrids. The upper part was covered by MacMat geogrid, while the lower part of the Mound was reinforced using Terramesh Matt geogrid. The slope analysis was performed by successives reduction of φ /c parameters. The total multiplayer ΣMsf is used to define the value of the soil strength parameters. The article presents the results of slope stability before and after the rainfall during 33 days of precipitation in flood of 2010.

Optimized design for heavy mound venturi

Directory of Open Access Journals (Sweden)

Xing Futang

2017-01-01

Full Text Available The venturi scrubber is one of the most efficient gas cleaning devices for removal of contaminating particles in industrial flue-gas purification processes. The velocity of the gas entering the scrubber is one of the key factors influencing its dust-removal efficiency. In this study, the shapes of the heavy mound and tube wall are optimized, allowing the girth area to become linearly adjustable. The resulting uniformity of velocity distribution is verified numerically.

Spatial patterns and morphology of termite (Macrotermes falciger) mounds in the upper Katanga, D.R. Congo

NARCIS (Netherlands)

Mujinya, B.B.; Adam, M.Y.O.; Mees, F.; Bogaert, J.; Vranken, I.; Erens, H.; Baert, G.; Ngongo, M.; Ranst, van E.

2014-01-01

This study examines the spatial distribution patterns and morphological characteristics of Macrotermes falciger mounds in the peri-urban zone of Lubumbashi, D.R. Congo. Spatial patterns of mounds were assessed using high-resolution satellite images for 24 plots of variable size (3 to 27 ha). Soil

Models of formation and activity of spring mounds in the mechertate-chrita-sidi el hani system, eastern Tunisia: implications for the habitability of Mars.

Science.gov (United States)

Essefi, Elhoucine; Komatsu, Goro; Fairén, Alberto G; Chan, Marjorie A; Yaich, Chokri

2014-08-28

Spring mounds on Earth and on Mars could represent optimal niches of life development. If life ever occurred on Mars, ancient spring deposits would be excellent localities to search for morphological or chemical remnants of an ancient biosphere. In this work, we investigate models of formation and activity of well-exposed spring mounds in the Mechertate-Chrita-Sidi El Hani (MCSH) system, eastern Tunisia. We then use these models to explore possible spring mound formation on Mars. In the MCSH system, the genesis of the spring mounds is a direct consequence of groundwater upwelling, triggered by tectonics and/or hydraulics. As they are oriented preferentially along faults, they can be considered as fault spring mounds, implying a tectonic influence in their formation process. However, the hydraulic pressure generated by the convergence of aquifers towards the surface of the system also allows consideration of an origin as artesian spring mounds. In the case of the MCSH system, our geologic data presented here show that both models are valid, and we propose a combined hydro-tectonic model as the likely formation mechanism of artesian-fault spring mounds. During their evolution from the embryonic (early) to the islet ("island") stages, spring mounds are also shaped by eolian accumulations and induration processes. Similarly, spring mounds have been suggested to be relatively common in certain provinces on the Martian surface, but their mode of formation is still a matter of debate. We propose that the tectonic, hydraulic, and combined hydro-tectonic models describing the spring mounds at MCSH could be relevant as Martian analogs because: (i) the Martian subsurface may be over pressured, potentially expelling mineral-enriched waters as spring mounds on the surface; (ii) the Martian subsurface may be fractured, causing alignment of the spring mounds in preferential orientations; and (iii) indurated eolian sedimentation and erosional remnants are common features on Mars

Models of Formation and Activity of Spring Mounds in the Mechertate-Chrita-Sidi El Hani System, Eastern Tunisia: Implications for the Habitability of Mars

Directory of Open Access Journals (Sweden)

Elhoucine Essefi

2014-08-01

Full Text Available Spring mounds on Earth and on Mars could represent optimal niches of life development. If life ever occurred on Mars, ancient spring deposits would be excellent localities to search for morphological or chemical remnants of an ancient biosphere. In this work, we investigate models of formation and activity of well-exposed spring mounds in the Mechertate-Chrita-Sidi El Hani (MCSH system, eastern Tunisia. We then use these models to explore possible spring mound formation on Mars. In the MCSH system, the genesis of the spring mounds is a direct consequence of groundwater upwelling, triggered by tectonics and/or hydraulics. As they are oriented preferentially along faults, they can be considered as fault spring mounds, implying a tectonic influence in their formation process. However, the hydraulic pressure generated by the convergence of aquifers towards the surface of the system also allows consideration of an origin as artesian spring mounds. In the case of the MCSH system, our geologic data presented here show that both models are valid, and we propose a combined hydro-tectonic model as the likely formation mechanism of artesian-fault spring mounds. During their evolution from the embryonic (early to the islet (“island” stages, spring mounds are also shaped by eolian accumulations and induration processes. Similarly, spring mounds have been suggested to be relatively common in certain provinces on the Martian surface, but their mode of formation is still a matter of debate. We propose that the tectonic, hydraulic, and combined hydro-tectonic models describing the spring mounds at MCSH could be relevant as Martian analogs because: (i the Martian subsurface may be over pressured, potentially expelling mineral-enriched waters as spring mounds on the surface; (ii the Martian subsurface may be fractured, causing alignment of the spring mounds in preferential orientations; and (iii indurated eolian sedimentation and erosional remnants are common

Effects of Erosion from Mounds of Different Termite Genera on Distinct Functional Grassland Types in an African Savannah.

Science.gov (United States)

Gosling, Cleo M; Cromsigt, Joris P G M; Mpanza, Nokukhanya; Olff, Han

A key aspect of savannah vegetation heterogeneity is mosaics formed by two functional grassland types, bunch grasslands, and grazing lawns. We investigated the role of termites, important ecosystem engineers, in creating high-nutrient patches in the form of grazing lawns. Some of the ways termites can contribute to grazing lawn development is through erosion of soil from aboveground mounds to the surrounding soil surface. This may alter the nutrient status of the surrounding soils. We hypothesize that the importance of this erosion varies with termite genera, depending on feeding strategy and mound type. To test this, we simulated erosion by applying mound soil from three termite genera ( Macrotermes , Odontotermes , and Trinervitermes ) in both a field experiment and a greenhouse experiment. In the greenhouse experiment, we found soils with the highest macro nutrient levels (formed by Trinervitermes ) promoted the quality and biomass of both a lawn ( Digitaria longiflora ) and a bunch ( Sporobolus pyramidalis ) grass species. In the field we found that soils with the highest micro nutrient levels (formed by Macrotermes ) showed the largest increase in cover of grazing lawn species. By linking the different nutrient availability of the mounds to the development of different grassland states, we conclude that the presence of termite mounds influences grassland mosaics, but that the type of mound plays a crucial role in determining the nature of the effects.

An overview of plutonium-238 decontamination and decommissioning (D and D) projects at Mound

International Nuclear Information System (INIS)

Bond, W.H.; Davis, W.P.; Draper, D.G.; Geichman, J.R.; Harris, J.C.; Jaeger, R.R.; Sohn, R.L.

1987-01-01

Mound is currently decontaminating for restricted reuse and/or decommissioning for conditional release four major plutonium-238 contaminated facilities that contained 1700 linear feet of gloveboxes and associated equipment and services. Several thousand linear feet of external underground piping, associated tanks, and contaminated soil are being removed. Two of the facilities contain ongoing operations and will be reused for both radioactive and nonradioactive programs. Two others will be completely demolished and the land area will become available for future DOE building sites. An overview of the successful techniques and equipment used in the decontamination and decommissioning of individual pieces of equipment, gloveboxes, services, laboratories, sections of buildings, entire buildings, and external underground piping, tanks, and soil in a highly populated residential area is described and pictorially presented

The long term sustainability of Mound Springs in South Australia : implications for olympic dam

International Nuclear Information System (INIS)

Mudd, G.M.

1998-01-01

The Mound Springs of South Australia are unique groundwater discharge features of the Great Artesian Basin, a deep regigonal groundwater system that covers over one-fifth of the Australia continent. They are the principal sources of water in the arid and semi-arid inland heart of Australia, and have great ecological, scientific, anthropological and economic significance. Excessive development of the Great Artesian Basin over the past century by European activity has seen an overall decline in the flows from the mound springs, and recent development of the water supply borefields for the WMC Olympic Dam Operations copper-uranium mine in the midst of the most important spring groups has exacerbated this problem. A review of the history of the borefields, an analysis of the impacts on the mound springs, and future recommendations for protection of the springs is presented. (orig.)

Measuring damage in physical model tests of rubble mounds

NARCIS (Netherlands)

Hofland, B.; Rosa-Santos, Paulo; Taveira-Pinto, Francisco; Lemos, Rute; Mendonça, A.; Juana Fortes, C

2017-01-01

This paper studies novel ways to evaluate armour damage in physical models of coastal structures. High-resolution damage data for reference rubble mound breakwaters obtained under the HYDRALAB+ joint-research project are analysed and discussed. These tests are used to analyse the way to describe

Origin and Formation of Giant Mounds in Lake Ladoga (Russia) from High-Resolution Seismic Reflection Data

Science.gov (United States)

Gromig, R.; Lebas, E.; Krastel, S.; Averes, T.; Wagner, B.; Melles, M.; Fedorov, G.

2017-12-01

In the framework of the German-Russian project `PLOT - Paleolimnological Transect' (for an overview of the project see Gromig et al., this meeting), a pilot seismic survey was carried out in Lake Ladoga (Russia) in late summer 2013. In total, 1500 km of seismic reflection profiles have been acquired using a mini-GI gun and a 32-channel seismic streamer. The high-resolution of the seismic data allows us to document in detail the sedimentary processes that occurred in the lake during the preglacial and postglacial history. The seismic stratigraphic architecture of the lake shows, from top to bottom, acoustically well-stratified Holocene muds overlaying rather transparent postglacial varves. These sediment successions are usually bordered by a hard reflector underneath, which may represent coarse-grained sediments or a till. The nature of the material composing the uppermost units have been tied to coring information from core Co1309, which was retrieved during the same survey. Of particular interest, are the single to composite, giant (kilometer-scale) mounds directly overlying the hard reflector. Internal architecture of the mounds reveals a complex formation history, with mound types showing significant structural deformation of different degrees; and other mound types showing a central deformation area, which strongly contrasts with the titled reflections or undisturbed stratification visible at the edges. The deepest seismic unit underlying the mounds is characterized by well-bedded, tilted reflectors in the southeastern part of the lake, while clear synclines are identified in the northwestern part of the lake. An erosional truncation separates the deepest unit from the overlying ones. In the work presented here, we focus on the understanding of the origin and the formation of the giant mounds with respect to the glacial history of Lake Ladoga.

Elimination of field colonies of a mound-building termite Globitermes sulphureus (Isoptera: Termitidae) by bistrifluron bait.

Science.gov (United States)

Neoh, Kok-Boon; Jalaludin, Nur Atiqah; Lee, Chow-Yang

2011-04-01

The efficacy of Xterm, which contains 1% bistrifluron, in the form of cellulose bait pellets was evaluated for its efficacy in eradicating field colonies of the mound-building termite Globitermes sulphureus (Haviland) (Isoptera: Termitidae). The termite mounds were dissected at the end of the experiment to determine whether the colonies were eliminated. By approximately 2 mo postbaiting, the body of termite workers appeared marble white, and mites were present on the body. The soldier-worker ratio increased drastically in the colonies, and the wall surface of the mounds started to erode. Colony elimination required at least a 4-mo baiting period. Mound dissection revealed wet carton materials (food store) that were greatly consumed and overgrown by fast-growing fungi. Decaying cadavers were scattered all over the nests. On average, 84.1 +/- 16.4 g of bait matrix (68.9 +/- 13.4%, an equivalent of 841 +/- 164 mg of bistrifluron) was consumed in each colony. Moreover, we found that a mere 143 mg of bistrifluron was sufficient to eliminate a colony of C. sulphureus.

Conservation and restoration of archaeological textiles from the disturbed Altai burial mounds of the early Iron age

Directory of Open Access Journals (Sweden)

Altynbekova Dana Kyrymovna

2015-09-01

Full Text Available The article deals with the experience of scientific-restoration laboratory “Ostrov Krym” of the conservation and restoration of archaeological textiles from disturbed mounds of the IV–III centuries BC, located in the Kazakh Altai. The specialists of the laboratory participate in field works, carrying out the extraction of large blocks/monoliths with findings, using methods of forming blocks developed in practice. Two methods are considered aimed on conservation of textiles recovered from excavation blocks, depending on their content. The first method is a sequential splitting of the block into its components with random set of fragments of organic material. The process of stratification of the conglomerate as well as the stabilization of the separated fragments and their identification is described. During the reconstruction of the textiles the well-preserved analogs of synchronous Altai burial mounds located on the territory of Russia and Mongolia have been used. Examples of reconstruction the pieces of felt are represented. The second method consists in preservation of the blocks without dissection. It is applied in case of their content has been considered as specific independent complex. The process of conservation is shown by the case-study of the fifth set, extracted from the excavation with the remains of the horse in the wet state. Conservation of dissimilar materials (fabric, felt, vegetable stuffing pillows, a tree with the metallic remains in the form of conglomerate has been carried out similarly to the conservation of wet archaeological wood. The block stabilization has been made in the wet state with a gradual replacement of the soil solution by consolidator.

Nutritional and Microbial Parameters of Earthworm Cast, Termite Mound and Surrounding Bulk Soil

OpenAIRE

Kawaguchi, Sadao; Nishi, Shingo

2007-01-01

A comparative analysis of nutritional and microbial parameters was conducted on two types of biogenetic structures of earthworm cast (8.7 cm in height, 7 casts/1m×1m) formed by litter eating Pheretima sp., and mound (64 cm in height, 1.0 mounds/10m×50m) built by fungus growing termite, Macrotermes gilvus, and compared to the surrounding bulk soil as control in the tropical monsoon forest in Cu Chi National Park of Viet Nam. The proportion of the sand in the earthworm cast was higher than in t...

Giant polygons and mounds in the lowlands of Mars: signatures of an ancient ocean?

Science.gov (United States)

Oehler, Dorothy Z; Allen, Carlton C

2012-06-01

This paper presents the hypothesis that the well-known giant polygons and bright mounds of the martian lowlands may be related to a common process-a process of fluid expulsion that results from burial of fine-grained sediments beneath a body of water. Specifically, we hypothesize that giant polygons and mounds in Chryse and Acidalia Planitiae are analogous to kilometer-scale polygons and mud volcanoes in terrestrial, marine basins and that the co-occurrence of masses of these features in Chryse and Acidalia may be the signature of sedimentary processes in an ancient martian ocean. We base this hypothesis on recent data from both Earth and Mars. On Earth, 3-D seismic data illustrate kilometer-scale polygons that may be analogous to the giant polygons on Mars. The terrestrial polygons form in fine-grained sediments that have been deposited and buried in passive-margin, marine settings. These polygons are thought to result from compaction/dewatering, and they are commonly associated with fluid expulsion features, such as mud volcanoes. On Mars, in Chryse and Acidalia Planitiae, orbital data demonstrate that giant polygons and mounds have overlapping spatial distributions. There, each set of features occurs within a geological setting that is seemingly analogous to that of the terrestrial, kilometer-scale polygons (broad basin of deposition, predicted fine-grained sediments, and lack of significant horizontal stress). Regionally, the martian polygons and mounds both show a correlation to elevation, as if their formation were related to past water levels. Although these observations are based on older data with incomplete coverage, a similar correlation to elevation has been established in one local area studied in detail with newer higher-resolution data. Further mapping with the latest data sets should more clearly elucidate the relationship(s) of the polygons and mounds to elevation over the entire Chryse-Acidalia region and thereby provide more insight into this

The giant cold-water coral mound as a nested microbial/metazoan system: physical, chemical, biological and geological picture (ESF EuroDiversity MiCROSYSTEMS)

Science.gov (United States)

Henriet, J. P.; Microsystems Team

2009-04-01

The MiCROSYSTEMS project under the ESF EUROCORES EuroDiversity scheme is a holistic and multi-scale approach in studying microbial diversity and functionality in a nested microbial/metazoan system, which thrives in deep waters: the giant cold-water coral mound. Studies on prolific cold-water coral sites have been carried out from the canyons of the Bay of Biscay to the fjords of the Norwegian margin, while the Pen Duick carbonate mound province off Morocco developed into a joint natural lab for studying in particular the impact of biogeochemical and microbial processes on modern sedimentary diagenesis within the reef sediments, in complement to the studies on I0DP Exp. 307 cores (Challenger Mound, off Ireland). Major outcomes of this research can be summarized as follows. • IODP Exp. 307 on Challenger Mound had revealed a significant prokaryotic community both within and beneath the carbonate mound. MiCROSYSTEMS unveils a remarkable degree of compartmentalization in such community from the seawater, the coral skeleton surface and mucus to the reef sediments. The occurrence of such multiple and distinct microbial compartments associated with cold-water coral ecosystems promotes opportunities for microbial diversity in the deep ocean. • New cases of co-habitation of cold-water corals and giant deep-water oysters were discovered in the Bay of Biscay, which add a new facet of macrofaunal diversity to cold-water coral reef systems. • The discovery of giant, ancient coral graveyards on the Moroccan mounds not only fuels the debate about natural versus anthropogenic mass extinction, but these open frameworks simultaneously invite for the study of bio-erosion and early diagenesis, in particular organo-mineralization, and of the possible role and significance of these thick, solid rubble patches in 3D mound-building and consolidation. • The assessment of the carbonate budget of a modern cold-water coral mound (Challenger Mound) reveals that only 33 to 40 wt % of

Bryan Mound InSAR Analysis U.S. Strategic petroleum Reserve.

Energy Technology Data Exchange (ETDEWEB)

Lord, Anna C. [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States)

2017-06-01

The U.S. Strategic Petroleum Reserve (SPR) is a stockpile of emergency crude oil to be tapped into if a disruption in the nation's oil supply occurs. The SPR is comprised of four salt dome sites. Subsidence surveys have been conducted either annually or biennially at all four sites over the life of the program. Monitoring of surface behavior is a first line defense to detecting possible subsurface cavern integrity issues. Over the life of the Bryan Mound site, subsidence rates over abandoned Cavern 3 have continuously been the highest at the site. In an effort to try and understand the subsurface dynamics, specifically over Bryan Mound Cavern 3, historic interferometric synthetic aperture radar (InSAR) data was acquired and processed by TRE Altamira. InSAR involves the processing of multiple satellite synthetic aperture radar scenes acquired across the same location of the Earth's surface at different times to map surface deformation. The analysis of the data has the ability to detect millimeters of motion spanning days, months, year and decades, across specific sites. The intent in regards to the Bryan Mound site was (1) to confirm the higher subsidence rates recorded over abandoned Cavern 3 indicated by land survey and (2) understand the regional surface behavior. This report describes the InSAR analysis results, how those results compare to the historical collection of land survey data, and what additional information the data has provided towards understanding the response recorded at the surface.

The Yeast Deletion Collection: A Decade of Functional Genomics

Science.gov (United States)

Giaever, Guri; Nislow, Corey

2014-01-01

The yeast deletion collections comprise >21,000 mutant strains that carry precise start-to-stop deletions of ∼6000 open reading frames. This collection includes heterozygous and homozygous diploids, and haploids of both MATa and MATα mating types. The yeast deletion collection, or yeast knockout (YKO) set, represents the first and only complete, systematically constructed deletion collection available for any organism. Conceived during the Saccharomyces cerevisiae sequencing project, work on the project began in 1998 and was completed in 2002. The YKO strains have been used in numerous laboratories in >1000 genome-wide screens. This landmark genome project has inspired development of numerous genome-wide technologies in organisms from yeast to man. Notable spinoff technologies include synthetic genetic array and HIPHOP chemogenomics. In this retrospective, we briefly describe the yeast deletion project and some of its most noteworthy biological contributions and the impact that these collections have had on the yeast research community and on genomics in general. PMID:24939991

Ft-Ir Spectroscopic Analysis of Potsherds Excavated from the First Settlement Layer of Kuriki Mound, Turkey

Science.gov (United States)

Bayazit, Murat; Isik, Iskender; Cereci, Sedat; Issi, Ali; Genc, Elif

The region covering Southeastern Anatolia takes place in upper Mesopotamia, so it has numerous cultural heritages due to its witness to various social movements of different civilizations in ancient times. Kuruki Mound is located on the junction point of Tigris River and Batman Creek, near Oymatas village which is almost 15 km to Batman, Turkey. The mound is dated back to Late Chalcolithic. Archaeological excavations are carried out on two hills named as “Kuriki Mound-1” and “Kuriki Mound-2” in which 4-layer and 2-layer settlements have been revealed, respectively. This region will be left under the water by the reservoir lake of Ilısu Dam when its construction is completed. Thus, characterization of ancient materials such as potsherds, metals and skeleton ruins should be rapidly done. In this study, 12 potsherds excavated from Layer-1 (the first settlement layer after the surface) in Kuriki Mound-2 were investigated by FT-IR spectrometry. Energy dispersive X-ray fluorescence (EDXRF) and X-ray diffraction (XRD) analyses were used as complementary techniques in order to expose chemical and mineralogical/phase contents, respectively. Obtained results showed that the potteries have been produced with calcareous clays and they include moderate amounts of MgO, K2O, Na2O and Fe2O3 in this context. Additionally, high temperature phases have also been detected with XRD analyses in some samples.

Stability of termite mound populations in a variable environment ...

African Journals Online (AJOL)

Of all the climatic variables in the environment of termites in southern Kenya, only rainfall shows marked seasonality and unpredictability. But despite the great variability in rainfall patterns, the populations of termite mounds of various species in three well-separated study areas remained remarkably constant over a period ...

Mathematical Model for Prediction of Flexural Strength of Mound ...

African Journals Online (AJOL)

The mound soil-cement blended proportions were mathematically optimized by using scheffe's approach and the optimization model developed. A computer program predicting the mix proportion for the model was written. The optimal proportion by the program was used prepare beam samples measuring 150mm x 150mm ...

A Preliminary Study on Elimination of Colonies of the Mound Building Termite Macrotermes gilvus (Hagen) Using a Chlorfluazuron Termite Bait in the Philippines

OpenAIRE

Partho Dhang

2011-01-01

The effectiveness of a chlorfluazuron termite bait in eliminating colonies of the termite species Macrotermes gilvus (Hagen) was evaluated under field conditions. Three active termite mounds were chosen for this study, two acted as test mounds and the other as the control. Four In-Ground Stations (IGS) were installed around each mound. Interception occurred almost immediately in all the stations, which were subsequently baited. The control mound was fed a bait matrix lacking the active ingred...

Functional traits of trees on and off termite mounds : Understanding the origin of biotically-driven heterogeneity in savannas

NARCIS (Netherlands)

van der Plas, F.; Howison, R.; Reinders, J.; Fokkema, W.; Olff, H.

Questions In African savannas, Macrotermes termites contribute to small-scale heterogeneity by constructing large mounds. Operating as islands of high nutrient and water availability and low fire frequency, these mounds support distinct, diverse communities of trees that have been shown to be highly

Mapping of Cold-Water Coral Carbonate Mounds Based on Geomorphometric Features: An Object-Based Approach

Directory of Open Access Journals (Sweden)

Markus Diesing

2018-01-01

Full Text Available Cold-water coral reefs are rich, yet fragile ecosystems found in colder oceanic waters. Knowledge of their spatial distribution on continental shelves, slopes, seamounts and ridge systems is vital for marine spatial planning and conservation. Cold-water corals frequently form conspicuous carbonate mounds of varying sizes, which are identifiable from multibeam echosounder bathymetry and derived geomorphometric attributes. However, the often-large number of mounds makes manual interpretation and mapping a tedious process. We present a methodology that combines image segmentation and random forest spatial prediction with the aim to derive maps of carbonate mounds and an associated measure of confidence. We demonstrate our method based on multibeam echosounder data from Iverryggen on the mid-Norwegian shelf. We identified the image-object mean planar curvature as the most important predictor. The presence and absence of carbonate mounds is mapped with high accuracy. Spatially-explicit confidence in the predictions is derived from the predicted probability and whether the predictions are within or outside the modelled range of values and is generally high. We plan to apply the showcased method to other areas of the Norwegian continental shelf and slope where multibeam echosounder data have been collected with the aim to provide crucial information for marine spatial planning.

Accelerated Clean-up of the United States Department of Energy, Mound Nuclear Weapons Facility in Miamisburg, Ohio

International Nuclear Information System (INIS)

Lehew, J.G.; Bradford, J.D.; Cabbil, C.C.

2006-01-01

CH2M HILL is executing a performance-based contract with the United States Department of Energy to accelerate the safe closure of the nuclear facilities at the former Mound plant in Miamisburg, Ohio. The contract started in January 2003 with a target completion date of March 31, 2006. Our accelerated baseline targets completion of the project 2 years ahead of the previous baseline schedule, by spring 2006, and for $200 million less than previous estimates. This unique decommissioning and remediation project is located within the City of Miamisburg proper and is designed for transfer of the property to the Miamisburg Mound Community Improvement Corporation for industrial reuse. The project is being performed with the Miamisburg Mound Community Improvement Corporation and their tenants co-located on the site creating significant logistical, safety and stakeholder challenges. The project is also being performed in conjunction with the United States Department of Energy, United States Environmental Protection Agency, and the Ohio Environmental Protection Agency under the Mound 2000 regulatory cleanup process. The project is currently over 95% complete. To achieve cleanup and closure of the Mound site, CH2M HILL's scope includes: - Demolition of 64 nuclear, radiological and commercial facilities - Preparation for Transfer of 9 facilities (including a Category 2 nuclear facility) to the Miamisburg Mound Community Improvement Corporation for industrial reuse - Removal of all above ground utility structures and components, and preparation for transfer of 9 utility systems to Miamisburg Mound Community Improvement Corporation - Investigation, remediation, closure, and documentation of all known Potential Release Sites contaminated with radiological and chemical contamination (73 identified in original contract) - Storage, characterization, processing, packaging and shipment of all waste and excess nuclear materials - Preparation for Transfer of the 306 acre site to the

The distribution, abundance, and the effects of fire on mound building termites (Trinervitermes and Cubitermes spp., Isoptera: Termitidae) in northern guinea savanna West Africa.

Science.gov (United States)

Benzie, John A H

1986-11-01

Termite mound densities in typical guinea savanna, Detarium, and grassland (boval) habitats in northern guinea savanna were determined by random quadratting of 2-3 sites in each habitat (100, 10x10 m quadrats per habitat). Dominant species in guinea savanna were T. geminatus (46 mounds ha -1 ) and T. oeconomus (21 mounds ha -1 ), in Detarium T. geminatus (59 mounds ha -1 ) and C. curtatus (45 mounds ha -1 ) and in boval C. curtatus (72 mounds ha -1 ) and T. geminatus (22 mounds ha -1 ). Only C. curtatus densities and total densities differed significantly between sites within habitats, but all species differed significantly in abundance between habitats. The composition of each community was related to general environment but no particular environmental variable was shown to be a major determinant of termite distribution. Evidence for the limitation of termite populations was obtained from indirect evidence of competition between colonies in Detarium, and by experimental manipulation of fire regimes in the typical guinea savanna habitat. Harvester termites increased four-five fold over two years in fire-protected plots as a result of increased food supplies. Total termite densities in the fire-protected community equilibrated to the new population density (100 mounds ha -1 ) after only two-three years.

Cold-water coral mounds on the Pen Duick Escarpment, Gulf of Cadiz: The MiCROSYSTEMS project approach

NARCIS (Netherlands)

Van Rooij, D.; Blamart, D.; De Mol, L.; Mienis, F.; Pirlet, H.; Wehrmann, L. M.; Barbieri, R.; Maignien, L.; Templer, S. P.; de Haas, H.; Hebbeln, D.; Frank, N.; Larmagnat, S.; Stadnitskaia, A.; Stivaletta, N.; van Weering, T.; Zhang, Y.; Hamoumi, N.; Cnudde, V.; Duyck, P.; Henriet, J.-P.; The MiCROSYSTEMS MD 169 Shipboard Party

2011-01-01

Here we present a case study of three cold-water coral mounds in a juvenile growth stage on top of the Pen Duick Escarpment in the Gulf of Cadiz; Alpha, Beta and Gamma mounds. Although cold-water corals are a common feature on the adjacent cliffs, mud volcanoes and open slope, no actual living

Ecosystem engineering creates a direct nutritional link between 600-m deep cold-water coral mounds and surface productivity

NARCIS (Netherlands)

Soetaert, K.; Mohn, C.; Rengstorf, A.; Grehan, A.; Van Oevelen, D.

2016-01-01

Cold-water corals (CWCs) form large mounds on the seafloor that are hotspots of biodiversity in the deep sea, but it remains enigmatic how CWCs can thrive in this food-limited environment. Here, we infer from model simulations that the interaction between tidal currents and CWC-formed mounds induces

Post Earthquack Slope Stability Analysis of Rubble Mound Breakwater

OpenAIRE

Amin Moradi; Amir Mahmoudzadeh; Yahya Rahim Safavi

2017-01-01

Rubble mound breakwaters are structures built mainly of quarried rock. Generally armourstone or artificial concrete armour units are used for the outer armour layer,which should protect the structure againist wave attack. Armour stones and concrete armoure unites in this outer layer are usually placed with care to obtain effective interlocking and consequently better stability .

Phylogeography of an Australian termite, Amitermes laurensis (Isoptera, Termitidae), with special reference to the variety of mound shapes.

Science.gov (United States)

Ozeki, Masato; Isagi, Yuji; Tsubota, Hiromi; Jacklyn, Peter; Bowman, David M J S

2007-01-01

In northern Australia, the debris-feeding termite Amitermes laurensis builds tall, wedge-shaped mounds in the northern part of Cape York Peninsula and Arnhem Land, where their habitats are seasonally flooded, and small dome shaped mounds in the southeastern part of Cape York Peninsula, where their habitats are well-drained. Phylogeographic analyses were conducted in 238 individuals from 30 populations using the mitochondrial cytochrome oxidase II (COII) gene. DNA sequences of 50 haplotypes were used to construct NJ, MP and ML trees. Phylogenetic trees for 16 Amitermes species showed monophyly of A. laurensis and the variation of A. laurensis mounds did not strongly correspond to the intraspecific phylogeny. It was observed that mounds with the same shape were constructed by phylogenetically different groups under similar environmental conditions and different mounds shapes were built by phylogenetically closely related groups under the different environmental conditions. Thus, phylogenetically close groups of A. laurensis, in different habitats, may adapt to environmental conditions by constructing different mound shapes. We also investigated the phylogeographic structure of A. laurensis. The significant positive correlation between genetic and geographic distances indicated isolation by distance, reflecting restricted dispersal ability of alates. Although the overall genetic structure of A. laurensis showed isolation by distance, we also identified two exceptions: (i) secondary contacts of genetically divergent lineages in southern Cape York Peninsula, and (ii) low genetic differences between geographically separated populations of Cape York Peninsula and Arnhem Land. Therefore, the phylogeography of A. laurensis may reflect continuous gene flow restricted to short distances and past changes of gene flow associated with the fluctuation of environmental conditions accompanying the changing sea levels in the Quaternary.

Hydraulic Response of Rubble Mound Breakwaters

DEFF Research Database (Denmark)

Andersen, Thomas Lykke

, which was not actually identifed as a white spot, but still there was room for big improvements. Rear slope stability and wave re ection has been discussed brie y. The conventional rubble mound breakwater has been investigated for many decades. Anyhow, there is still room for improvements in some areas...... experimental test programme with berm breakwaters, has not only resulted in an enormous amount of overtopping data, but also establishment of a design formula to calculate average overtopping discharges. Further, the test programme led to an improved design rule for front side stability of berm breakwaters...

Wave Run-up on the Zeebrugge Rubble Mound Breakwater

DEFF Research Database (Denmark)

De Rouck, Julien; de Walle, Bjorn Van; Troch, Peter

2007-01-01

Full-scale wave run-up measurements have been carried out on the Zeebrugge rubble mound breakwater in the frame of the EU-funded OPTICREST project. Wave run-up has been measured by a run-up gauge and by a so-called spiderweb system. The dimensionless wave run-up value Ru2%Hm0 measured in Zeebrugg...

Litter-forager termite mounds enhance the ectomycorrhizal symbiosis between Acacia holosericea A. Cunn. Ex G. Don and Scleroderma dictyosporum isolates.

Science.gov (United States)

Duponnois, Robin; Assikbetse, Komi; Ramanankierana, Heriniaina; Kisa, Marija; Thioulouse, Jean; Lepage, Michel

2006-05-01

The hypothesis of the present study was that the termite mounds of Macrotermes subhyalinus (MS) (a litter-forager termite) were inhabited by a specific microflora that could enhance with the ectomycorrhizal fungal development. We tested the effect of this feeding group mound material on (i) the ectomycorrhization symbiosis between Acacia holosericea (an Australian Acacia introduced in the sahelian areas) and two ectomycorrhizal fungal isolates of Scleroderma dictyosporum (IR408 and IR412) in greenhouse conditions, (ii) the functional diversity of soil microflora and (iii) the diversity of fluorescent pseudomonads. The results showed that the termite mound amendment significantly increased the ectomycorrhizal expansion. MS mound amendment and ectomycorrhizal inoculation induced strong modifications of the soil functional microbial diversity by promoting the multiplication of carboxylic acid catabolizing microorganisms. The phylogenetic analysis showed that fluorescent pseudomonads mostly belong to the Pseudomonads monteillii species. One of these, P. monteillii isolate KR9, increased the ectomycorrhizal development between S. dictyosporum IR412 and A. holosericea. The occurrence of MS termite mounds could be involved in the expansion of ectomycorrhizal symbiosis and could be implicated in nutrient flow and local diversity.

Grainstones and cementstone mounds: The Trogkofel summit section (Lower Permian, Carnic Alps, Austria).

Science.gov (United States)

Schaffhauser, M.; Sanders, D.; Krainer, K.

2009-04-01

In the Carnic Alps, Austria, an Artinskian succession 400 m thick of shallow-water bioclastic limestones and of mounds composed of ?Archaeolithophyllum, Archaeolithoporella and abundant fibrous cementstone (after former aragonite) records deposition along a "grainstone-dominated" platform margin. The section was taken along the route through the east-facing cliff of Trogkofel. The Trogkofel Limestone (Artinskian pro parte) is excellently exposed and preserved the most complete along this route, but no section has hitherto been logged. The total thickness of the Trogkofel Limestone probably is about 550 meters; the summit section comprises its upper 400 meters. The section consists mainly of shallow-water bioclastic limestones (grainstones, packstones, rudstones) intercalated with cementstone mounds. Both the bioclastic limestones and the mounds typically are thick-bedded to, more commonly, unbedded. Throughout the section, intervals a few tens of meters in thickness dominated by bioclastic limestones change vertically with intervals dominated by cementstone mounds. Up-section, no clear-cut trend with respect to prevalent facies, mean depositional water depth, and energy index is obvious. Furthermore, no lime-muddy, meter-scale peritidal cycles, and no teepee structures and no pisolite levels were identified; thin intervals of fenestral lime mudstones and/or of cryptmicrobially-laminated limestones are very rare. The bioclastic limestones commonly weather out unstratified, or show subhorizontal stratification or, more rarely, low-angle cross-stratification. In the upper 100 meters of section, grainstones to fine-grained rudstones rich in keystone vugs are prevalent. The cementstone mounds comprise intervals up to a few meters in thickness; the biogenic component is characterized by foliose crusts pertaining to ?Archaeolithophyllum hidensis and Archaeolithoporella, overgrown by Tubiphytes and fenestrate bryozoans. The ?Archaeolithophyllum-Archaeolithoporella crusts

The nest growth of the neotropical mound-building termite, Cornitermes cumulans: a micromorphological analysis.

Science.gov (United States)

Cosarinsky, Marcela I

2011-01-01

The nests of Cornitermes cumulans K. (Isoptera: Termitidae), a very common termite in South American grasslands, display notable morphological transformations during the development of the colony. Young colonies inhabit small subterranean nests that develop into large, conspicuous, epigean mounds, inhabited by very populous colonies. Those macromorphological transformations are accompanied by micromorphological changes occurring gradually in the nest walls. The micromorphological changes during nest development described in the present study expand on previous macromorphological descriptions by explaining the re-organization of the soil components during nest growth. In subterranean nests, walls are composed of piles of lensshaped aggregates of soil material, each one surrounded by a thin organic coating. As the nest grows, mound walls are constructed by disassembling this first lenticular structure and rearranging the materials in a new fabric, where sand grains are loosely distributed among soil microaggregates of organic matter and clay. This is also a temporary construction, because the walls of large nests are composed of a porous mass of sands densely cemented with organic matter and clay in the mound, and a compact mass of the same components in the floor.

Effects of vertical wall and tetrapod weights on wave overtopping in rubble mound breakwaters under irregular wave conditions

Directory of Open Access Journals (Sweden)

Park Sang Kil

2014-12-01

Full Text Available Rubble mound breakwaters protect the coastal line against severe erosion caused by wave action. This study examined the performance of different sizes and properties (i.e. height of vertical wall and tetrapod size of rubble mound breakwaters on reducing the overtopping discharge. The physical model used in this study was derived based on an actual rubble mound in Busan Yacht Harbor. This research attempts to fill the gap in practical knowledge on the combined effect of the armor roughness and vertical wall on wave overtopping in rubble mound breakwaters. The main governing parameters used in this study were the vertical wall height, variation of the tetrapod weights, initial water level elevation, and the volume of overtopping under constant wave properties. The experimental results showed that the roughness factor differed according to the tetrapod size. Furthermore, the overtopping discharge with no vertical wall was similar to that with relatively short vertical walls ( 1 γv = 1. Therefore, the experimental results highlight the importance of the height of the vertical wall in reducing overtopping discharge. Moreover, a large tetrapod size may allow coastal engineers to choose a shorter vertical wall to save cost, while obtaining better performance.

Effects of vertical wall and tetrapod weights on wave overtopping in rubble mound breakwaters under irregular wave conditions

Directory of Open Access Journals (Sweden)

Sang Kil Park

2014-12-01

Full Text Available Rubble mound breakwaters protect the coastal line against severe erosion caused by wave action. This study examined the performance of different sizes and properties (i.e. height of vertical wall and tetrapod size of rubble mound breakwaters on reducing the overtopping discharge. The physical model used in this study was derived based on an actual rubble mound in Busan Yacht Harbor. This research attempts to fill the gap in practical knowledge on the combined effect of the armor roughness and vertical wall on wave overtopping in rubble mound breakwaters. The main governing parameters used in this study were the vertical wall height, variation of the tetrapod weights, initial water level elevation, and the volume of overtopping under constant wave properties. The experimental results showed that the roughness factor differed according to the tetrapod size. Furthermore, the overtopping discharge with no vertical wall was similar to that with relatively short vertical walls (γν = 1. Therefore, the experimental results highlight the importance of the height of the vertical wall in reducing overtopping discharge. Moreover, a large tetrapod size may allow coastal engineers to choose a shorter vertical wall to save cost, while obtaining better performance.

LBA-ECO ND-04 Termite Mound and Soil Characterization, Amazonas, Brazil: 1999-2001

Data.gov (United States)

National Aeronautics and Space Administration — ABSTRACT: This data set reports the results of a comprehensive study of mound building termites at the Embrapa research station in the Distrito Agropecuario da...

LBA-ECO ND-04 Termite Mound and Soil Characterization, Amazonas, Brazil: 1999-2001

Data.gov (United States)

National Aeronautics and Space Administration — This data set reports the results of a comprehensive study of mound building termites at the Embrapa research station in the Distrito Agropecuario da SUFRAMA,...

Comparison ecological characteristics of mound-building mouse (mus spicilegus in two natural hotbeds of tularemia at North-West coast of the Black sea

Directory of Open Access Journals (Sweden)

І. T. Rusev

2011-03-01

Full Text Available The analysis of ecology-epizootic monitoring of North-West coast of the Black sea carried out in wintering seasons of 2004, 2005 and 2011 testifies the basic role of the Mound-building mouse (Mus spicilegus Petenyi, 1882 as a carrier of Francisella tularensis. Spatial distribution of the Mound-building mouse strongly dependson a biotope, geographical region and weather conditions of a specific season. Mice nests in the storage mounds are located normally at a depth of 20–40 cm under the food storage chamber. Average number of the mice in storage mounds is 3.08 ± 1.54 in the south of investigated region and 3.88 ± 2.63 – in the NE of the region.

On the Origin of the Dragon Image on the Plate from Shilovka Burial Mound

Directory of Open Access Journals (Sweden)

Liphanov Nicolay А.

2017-07-01

Full Text Available The author of the article analyzes an unique image of two opposed dragons engraved on a bone plate discovered in 1992 at barrow No.1 of Shilovka burial mound located on the right bank of the Volga river in Ulyanovsk Oblast (the excavations were conducted by R.S. Bagautdinov. The burial mound is related to the cattle breeding population of late 7th century. The article considers different hypotheses concerning the origin of these dragon images in the artistic traditions of various regions: China (A.V. Komar, D.G. Savinov, B. Totev, Pelevina, Central Asia (V.G. Kotov, V.E. Flyorova, India (N.A. Fonyakova. According to the author, this image has no apparent iconographic parallels in the traditions of these regions. Such analogues are found in the art of the Mediterranean where the ancient images of various mythological creatures exist alongside the image of the sea dragon “ketos” which later became part of the Christian tradition. The appearance of this monster in the images of the first half – middle of the 1st millennium A.D. is practically identical to the dragons from Shilovka burial mound. According to the author, certain impact on the formation of the considered dragon image was made by Iranian art.

Do Mound Disturbance and Bait Placement Affect Bait Removal and Treatment Efficacy in Red Imported Fire ant (Hymenoptera: Formicidae at Different Seasons?

Directory of Open Access Journals (Sweden)

Xing P. Hu

2009-01-01

Full Text Available This study provides empirical evidence that disturbing mound immediately before application, as opposed to label recommendation, did not reduce foraging activity of the red imported fire ant, Solenopsis invicta Buren, except for about 10-min delay in foraging. Despite the delayed foraging, there was no significant difference in the amount of baits foraged between disturbed and undisturbed colonies. Eventually, >96% of the baits were foraged, with the maximum removal occurred by 2 and 3 h, respectively, in summer and spring trial. The fastest and great amount of bait removal 1 h post-treatment occurred to baits placed on mound, followed by 0.18–0.3-m from mound base, and the slowest 1.08–1.2-m from mound base. All treatment gave 100% control 1 mo later, regardless of the season, without colony relocation or new colony invasion in the test plots.

Behaviour and Ecological Impacts of Termites: Fecundity Investigations in Mounds

Directory of Open Access Journals (Sweden)

Wako Sutuma Edessa

2015-03-01

Full Text Available A radical study was conducted on the behaviour and ecological impacts of termites in Haru District of Western Oromia, Ethiopia. It was aimed at investigating the natural behaviour, fecundity in mounds, ecological impacts and recommending possible solutions to termite problems. Four mounds in different sites were vertically dug down to display the profile of the queen, soldiers, workers, number of laid eggs, nymphs and colonies of termites. On an average, termite queens of the study site may lay about 25 eggs per minute, 36, 000 eggs per day and 13, 140, 000 eggs annually. The fourth queen was unearthed to study the structure, size, number of ovaries and fecundity. It was examined that the death of a queen does not affect the colony, because four small queens are formed and one of them becomes the queen of queens and replaced the dead queen promptly. Accordingly, termites are found to be one of the most destructive agents of our ecosystems and their management requests careful and biological control methods. As a result, the negative effect of termites outweighs the positive effect of termites so that minimising the population size is important for human beings.

Mound's decommissioning experience, tooling, and techniques

International Nuclear Information System (INIS)

Combs, A.B.; Davis, W.P.; Elswick, T.C.; Garner, J.M.; Geichman, J.R.

1982-01-01

Monsanto Research Corporation (MRC), which operates Mound for the Department of Energy (DOE), has been decommissioning radioactively contaminated facilities since 1949. We are currently decommissioning three plutonium-238 contaminated facilities (approximately 50,000 ft 2 ) that contained 1100 linear ft of gloveboxes; 900 linear ft of conveyor housing; 2650 linear ft of dual underground liquid waste lines; and associated contaminated piping, services, equipment, structures, and soil. As of June 1982, over 29,000 Ci of plutonium-238 have been removed in waste and scrap residues. As a result of the current and previous decommissioning projects, valuable experience has been gained in tooling and techniques. Special techniques have been developed in planning, exposure control, contamination control, equipment removal, structural decontamination, and waste packaging

Focused risk assessment: Mound Plant, Miami-Erie Canal Operable Unit 4

International Nuclear Information System (INIS)

Rogers, D.R.; Dunning, D.F.

1994-01-01

In 1969, an underground waste line at Mound Plant ruptured and released plutonium-238 in a dilute nitric acid solution to the surrounding soils. Most of the acid was neutralized by the native soils. The plutonium, which in a neutral solution is tightly sorbed onto clay particles, remained within the spill area. During remediation, a severe storm eroded some of the contaminated soil. Fine grained plutonium-contaminated clay particles were carried away through the natural drainage courses to the remnants of the Miami-Erie Canal adjacent to Mound Plant, and then into the Great Miami River. This focused risk assessment considers exposure pathways relevant to site conditions, including incidental ingestion of contaminated soils, ingestion of drinking water and fish, and inhalation of resuspended soils and sediments. For each potential exposure pathway, a simplified conceptual model and exposure scenarios have been used to develop conservative estimates of potential radiation dose equivalents and health risks. The conservatism of the dose and risk estimates provides a substantive margin of safety in assuring that the public health is protected

Prospects of Coir Fibre as Reinforcement in Termite Mound Clay Bricks

Directory of Open Access Journals (Sweden)

Akinyemi Banjo A.

2016-09-01

Full Text Available The study is to develop an appropriate environmental friendly building material that would be sourced, obtained locally and used for construction of structures at a low cost by using termite mound soil, reinforced with 0%, 1%, 2%, 3%. and 4% coir fibres. Physical and mechanical tests were conducted on the different composition samples after curing. The particle size distribution showed that clay had the largest percentage with a moisture content of 3.53%, specific gravity of 2.0, liquid limit of 30.5% and plastic limit value of 25.4. The compressive strength test showed a decrease with increase in fibre content from 1% upward, modulus of rupture test showed that increase in fibre content leads to a corresponding increase in rupture while the modulus of elasticity test showed that from 3% to 4% fibre content, a decrease in the elasticity occurred. It can be concluded that low fibre inclusion into compressed termite mound brick is feasible if fibre content do not exceed 2% and thus can be used for both load and non-loading bearing structures.

Geoarchaeological research on Bronze Age settlement mounds in the Kolkheti lowlands at the Black Sea coast of Georgia

Science.gov (United States)

Laermanns, Hannes; Heisterkamp, Arne; Kirkitadze, Giorgi; Elashvili, Mikheil; Verheul, Jan; Kelterbaum, Daniel; Helmut, Brückner

2016-04-01

0.0.1 Situated between the Rivers Enguri in the north and Khobistsqali in the south, more than 20 settlement mounds (local name Dikhagudzuba), identified by field survey and remote sensing techniques, give evidence of a densely populated landscape in the coastal lowlands of eastern Georgia during the Bronze Age. While the existing chronology of these mounds is based on ceramic evidence obtained during a previous archaeological research, only limited information is available on their internal architecture and their palaeoenvironmental context, and the chronology of the different layers is as yet lacking. 0.0.2 Within the framework of a geoarchaeological research project, we carried out eleven vibracores on and in direct vicinity of three of the most prominent mounds, situated close to the villages of Orulu and Ergeta. Based on these sediment cores, our study aims at (i) establishing a chronostratigraphical framework for the settlements based on radiocarbon dating; (ii) reconstructing possible phases and gaps of occupation; and (iii) identifying the environmental conditions during the time of their existence. Geochemical and sedimentological analyses were carried out to decipher element contents (XRF), granulometry, and organic contents (LOI, C/N) of sediment samples, supporting the interpretation of the mounds' stratigraphical evolution and related human occupation. The three investigated settlement mounds are similar in dimension and stratigraphy, and different settlement layers could be identified in each of them. The 14C age estimates indicate that their formation occurred during the second half of the 3rd and the first half of the 2nd millennium BC, thus confirming the archaeological interpretation of their Bronze Age origin. Based on the granulometric and geochemical data, palaeoenvironmental conditions in the vicinity of the settlements were dominated by fluvial processes.

PCR detection of retinoblastoma gene deletions in radiation-induced mouse lung adenocarcinomas

International Nuclear Information System (INIS)

Churchill, M.E.; Gemmell, M.A.; Woloschak, G.E.

1994-01-01

From 1971--1986, Argonne National Laboratory conducted a series of large-scale studies of tumor incidence in 40,000 BCF 1 mice irradiated with 60 Co γ-rays or JANUS fission-spectrum neutrons. Polymerase chain reaction (PCR) technique was used to detect deletions in the mouse retinoblastoma (mRb) gene. Six mRb gene exon fragments were amplified in a 40-cycle, 3-temperature PCR protocol. Absence of any of these fragments on a Southern blot indicated a deletion of that portion of the mRb gene. Tumors chosen for analysis were lung adenocarcinomas that were judged to be the cause of death in post-mortem analyses. Spontaneous tumors as well as those from irradiated mice were analyzed for mRb deletions. In all normal mouse tissues studies all six mRb exon fragments were present on Southern blots. Tumors in six neutron-irradiated mice also had no mRb deletions. However, 1 of 6 tumors from γ-irradiated mice and 6 of 18 spontaneous tumors from unirradiated mice showed a deletion in one or both mRb alleles. All deletions detected were in the 5' region of the mRb gene

Stable isotope sales: Mound Facility customer and shipment summaries, FY 1981

International Nuclear Information System (INIS)

Ruwe, A.H. Jr.

1982-01-01

A listing is given of Mound Facility's sales of stable isotopes of noble gases, carbon, oxygen, nitrogen, chlorine, and sulfur for Fiscal Year 1981. Purchasers are listed alphabetically and are divided into domestic and foreign groups. A cross-reference index by location is included for domestic customers. Cross-reference listings by isotope purchased are included for all customers

Stable isotope sales; Mound Facility customer and shipment summaries, FY 1977

International Nuclear Information System (INIS)

Ruwe, A.H. Jr.

1978-01-01

A listing is given of Mound Facility's sales of stable isotopes of noble gases, carbon, oxygen, nitrogen, chlorine, and sulfur for Fiscal Year 1977. Purchasers are listed alphabeticaly and are divided into domestic and foreign groups. A cross-reference index by location is included for domestic customers. Cross-reference listings by isotope purchased are included for all customers

On the Choice of Structure and Layout of Rubble Mound Breakwater Heads

DEFF Research Database (Denmark)

Maciñeira, Enrique; Burcharth, Hans F.

2006-01-01

 The paper discusses the various functional, environmental and structural conditions to consider related to the choice of breakwater head type. Results from hydraulic model tests of rubble mound and caisson head solutions for the new deep water port at Punto Langosteira, La Coruña, Spain, are pre...

The Influence of Slope and Shelf Contour Currents On The Growth Pattern of A Cold-water Coral Mound Population Along The Margins of The Rockall Trough

Science.gov (United States)

Readman, P. W.; O'Reilly, B. M.; Shannon, P. M.; Jacob, A. W. B.

The importance of bottom currents along the shelf and slope regions of northeast At- lantic basin margins in controlling sediment transport patterns and the development of carbonate mound ecosystems is now well recognised. The detailed structure of one such large carbonate mound population has been resolved along the western margin of the Porupine Bank west of Ireland with deep-tow (TOBI) sidescan. The mounds which comprise the population are circular to elliptical in shape, 50 - 850 m across and up to about 200 m high. Large scale sedimentary bedforms at 800 m water depth are inferred from backscatter zonation produced by strong NE-flowing contour currents. Streamlining effects control the shape of the mounds as they become more elliptical as their size increases. The frequency distribution follows a general power law which is determined by the biological growth rate of the mounds and the rate at which they colonise the substrate. At first bottom currents aid mound growth until they become so large that hydraulic drag forces retard their growth. In the recent past (late Pleistocene to present) if the number of mounds colonising the slope has increased exponentially with time while their growth rate slowed in response to fluid form drag forces, the observed population curve can be recovered. A model for evolution of the population predicts that these increased forces slow biological growth and cause a sharp fall-off in the number of mounds, also in agreement with observation. Correlation with late Pleistocene and Holocene climatic change suggests that the population is either very robust and relatively insensitive to major environmental change along the continental slope such as a change in current regime, or that the factors controlling its develop- ment were stable over large time intervals. This project was undertaken on behalf of the Irish Petroleum Infrastructure Programme.

Ecosystem engineering creates a direct nutritional link between 600-m deep cold-water coral mounds and surface productivity

Science.gov (United States)

Soetaert, Karline; Mohn, Christian; Rengstorf, Anna; Grehan, Anthony; van Oevelen, Dick

2016-10-01

Cold-water corals (CWCs) form large mounds on the seafloor that are hotspots of biodiversity in the deep sea, but it remains enigmatic how CWCs can thrive in this food-limited environment. Here, we infer from model simulations that the interaction between tidal currents and CWC-formed mounds induces downwelling events of surface water that brings organic matter to 600-m deep CWCs. This positive feedback between CWC growth on carbonate mounds and enhanced food supply is essential for their sustenance in the deep sea and represents an example of ecosystem engineering of unparalleled magnitude. This ’topographically-enhanced carbon pump’ leaks organic matter that settles at greater depths. The ubiquitous presence of biogenic and geological topographies along ocean margins suggests that carbon sequestration through this pump is of global importance. These results indicate that enhanced stratification and lower surface productivity, both expected consequences of climate change, may negatively impact the energy balance of CWCs.

Landward Distribution of Wave Overtopping for Rubble Mound Breakwaters

DEFF Research Database (Denmark)

Andersen, Thomas Lykke; Burcharth, Hans F.

2006-01-01

Overtopping data from seven model test projects has been analyzed with respect to the landward spatial distribution of the overtopping discharge. In total more than 1000 overtopping tests have been analysed and a formula derived for prediction of the landward distribution of overtopping behind...... rubble mound structures with a super structure. The analysis led to the conclusion that although the overtopping discharge, for identical wave heights, decreases with increasing wave steepness, then the maximum travel distance increases with increasing wave steepness....

Construction, Maintenance and Repair as Elements in Rubble Mound Breakwater Design

DEFF Research Database (Denmark)

Burcharth, Hans F.; Rietveld, C.F.W.

Very often rubble mound breakwater designs seem to be a result only of stability considerations corresponding to design wave conditions. Designers tend to put too little emphasis on practical problems related to construction, maintenance and repair. As is discussed in the paper due consideration...... of these problems Ieeds to a more economical design in terms of lower total costs during the structural lifetime....

Long-term baited lander experiments at a cold-water coral community on Galway Mound (Belgica Mound Province, NE Atlantic)

Science.gov (United States)

Lavaleye, Marc; Duineveld, Gerard; Bergman, Magda; van den Beld, Inge

2017-11-01

A long-term lander employing a baited camera system was developed to study temporal variation in the presence of scavenging fish and invertebrates at a cold-water coral community on Galway Mound (Belgica Mound Province, NE Atlantic). The camera system was tested during two successful long-term deployments for periods of 6 and 12 months respectively. The baited system, consisting of two separate video cameras with infrared lights and a bait dispenser with 24 bait positions, recorded more than 15,500 clips of 17 s, regularly spread over both periods. New bait, consisting of sardines in oil, was offered at regular time intervals, and attracted scavengers over the whole period of deployment, and especially the crab Chaceon affinis did still eat from it till the end of the deployments. However, the attractiveness for some scavengers, i.e. amphipods, diminished quite quickly. In addition to invertebrate scavengers, namely C. affinis, two other crab species, amphipods, a shrimp and a starfish, also 7 species of fish were recorded near the bait, of which Lepidion eques was by far the most common. Though there was no concrete evidence for seasonal patterns, the observations showed substantial temporal variation in the abundance of several species, especially the crabs C. affinis and Bathynectes maravigna and the fish Phycis blennoides. It is concluded that long-term deployments of such a baited camera system can produce novel data. For instance such a system could be employed for monitoring impacts of disturbances on the deep-sea floor (e.g. mining), as we infer that mobile scavengers will be among the first organisms to show a visible reaction to any chemically and physically (noise, vibrations) alteration of the environment similar to a mine canary.

Struvite for composting of agricultural wastes with termite mound: Utilizing the unutilized.

Science.gov (United States)

Karak, Tanmoy; Sonar, Indira; Nath, Jyoti Rani; Paul, Ranjit Kumar; Das, Sampa; Boruah, Romesh Kumar; Dutta, Amrit Kumar; Das, Kuntal

2015-01-01

Although, compost is the store house of different plant nutrients, there is a concern for low amount of major nutrients especially nitrogen content in prepared compost. The present study deals with preparation of compost by using agricultural wastes with struvite (MgNH4PO4·6H2O) along with termite mound. Among four composting mixtures, 50kg termite mound and 2.5kg struvite with crop residues (stover of ground nut: 361.65kg; soybean: 354.59kg; potato: 357.67kg and mustard: 373.19kg) and cow dung (84.90kg) formed a good quality compost within 70days of composting having nitrogen, phosphorus and potassium as 21.59, 3.98 and 34.6gkg(-1), respectively. Multivariate analysis of variance revealed significant differences among the composts. The four composts formed two (pit 1, pit 2 and pit 3, pit 4) different groups. Two principal components expressed more than 97% of the total variability. Hierarchical cluster analysis resulted two homogeneous groups of composts. Copyright © 2015 Elsevier Ltd. All rights reserved.

Critiques of the seismic hypothesis and the vegetation stabilization hypothesis for the formation of Mima mounds along the western coast of the U.S.

Science.gov (United States)

Gabet, Emmanuel J.; Burnham, Jennifer L. Horwath; Perron, J. Taylor

2016-09-01

A recent paper published in Geomorphology by Gabet et al. (2014) presents the results of a numerical model supporting the hypothesis that burrowing mammals build Mima mounds - small, densely packed hillocks found primarily in the western United States. The model is based on field observations and produces realistic-looking mounds with spatial distributions similar to real moundfields. Alternative explanations have been proposed for these Mima mounds, including formation by seismic shaking and vegetation-controlled erosion and deposition. In this short communication, we present observations from moundfields in the coastal states of the western U.S. that are incompatible with these alternative theories.

Composting of cow dung and crop residues using termite mounds as bulking agent.

Science.gov (United States)

Karak, Tanmoy; Sonar, Indira; Paul, Ranjit K; Das, Sampa; Boruah, R K; Dutta, Amrit K; Das, Dilip K

2014-10-01

The present study reports the suitability of termite mounds as a bulking agent for composting with crop residues and cow dung in pit method. Use of 50 kg termite mound with the crop residues (stover of ground nut: 361.65 kg; soybean: 354.59 kg; potato: 357.67 kg and mustard: 373.19 kg) and cow dung (84.90 kg) formed a good quality compost within 70 days of composting having nitrogen, phosphorus and potassium as 20.19, 3.78 and 32.77 g kg(-1) respectively with a bulk density of 0.85 g cm(-3). Other physico-chemical and germination parameters of the compost were within Indian standard, which had been confirmed by the application of multivariate analysis of variance and multivariate contrast analysis. Principal component analysis was applied in order to gain insight into the characteristic variables. Four composting treatments formed two different groups when hierarchical cluster analysis was applied. Copyright © 2014 Elsevier Ltd. All rights reserved.

Markers of Soil Organic Matter Transformation in Permafrost Peat Mounds of Northeastern Europe

Science.gov (United States)

Pastukhov, A. V.; Knoblauch, C.; Yakovleva, E. V.; Kaverin, D. A.

2018-01-01

For the paleoreconstruction of permafrost peat mounds and the identification of plant communities participating in the formation of peat, the contents of n-alkanes (C20-C33) have been determined, and relative changes in the stable isotope compositions of carbon and nitrogen and the C/N ratio have been analysed. Several indices ( CPI alkanes, P aq, P wax) have been calculated to assess the degree of decomposition of the peats studied and the contributions of different plant species to their formation. It has been found that shortand long-chain n-alkanes are concentrated in high-moor peat, while medium-chain alkanes are typical for transitional peat. Integrated analysis of the studied markers has shown that the botanical and material composition of peat, anaerobic conditions of bog formation, and permafrost play an important role in the preservation of organic carbon in permafrost peat mounds. Alternation of plant associations is the main reason for changes in n-alkane concentrations, C/N ratios, and δ13C values.

Termite mounds as hot spots of nitrous oxide emissions in South-Sudanian savanna of Burkina Faso (West Africa)

Science.gov (United States)

Brümmer, Christian; Papen, Hans; Wassmann, Reiner; Brüggemann, Nicolas

2009-05-01

Despite a considerable knowledge of the significant role of termites in the global methane budget, very little is known about their contribution to the global nitrous oxide (N2O) budget. Release of N2O from termite (Cubitermes fungifaber) mounds was measured at a natural savanna site in the southwest of Burkina Faso from May to September 2006. Termite N2O emissions were around 20 μg N2O-N m-2 h-1 at the end of the dry season, and up to two orders of magnitude higher than N2O emissions from the surrounding termite-free soil after the onset of the rainy season. The average N2O emission rate from termite mounds during the observation period was 204 μg N2O-N m-2 h-1, and termite mounds contributed 3.0% to total N2O emissions from this savanna ecosystem. However, in other tropical terrestrial ecosystems with other termite species and/or higher termite density this share might be significantly higher.

Cultural Symbolism behind the Architectural Design of Mounds Park All-Nations Magnet School.

Science.gov (United States)

Pewewardy, Cornell; May, Paul G.

1992-01-01

The architectural design of Mounds Park All-Nations Magnet School (St. Paul, Minnesota) incorporates cultural symbols representing the Native American worldview and Medicine Wheel Circle beliefs, as well as design elements from aboriginal housing styles, and colors and sculptured elements that reinforce the relationship of nature to building. (SV)

Summary review of Mound Facility's experience in decontamination of concrete

International Nuclear Information System (INIS)

Combs, A.B.; Davis, W.P.; Garner, J.M.; Geichman, J.R.

1980-01-01

Most of the current concrete decontamination work at Mound Facility involves surfaces that are contaminated with plutonium-238. Approximately 60,000 sq. ft. of concrete floors will have to be decontaminated in Mound's current Decontamination and Decommissioning (D and D) Project. Although most of these surfaces are partially protected by a barrier (tile or paint), contaminated water and acid have penetrated these barriers. The technique for decontaminating these floors is desribed. The initial cleaning of the floor involes standard water and detergent. Acids are not used in cleaning as they tend to drive the contamination deeper into the concrete surface. Next, the floor tile is manually removed inside a temporary enclosure under negative and filtered ventilation. Finally, layers of contaminated concrete are mechanically removed inside the ventilated enclosure. The suspected depth and surface area of contamination determines the type of mechanical tool used. In summary, several generic methods of concrete decontamination can be utilized: chemical, such as water, detergent, acids, paint remover, strippable paints, etc.; rotary using sanders, grinders, scarifiers, etc.; impact such as pressure washers (hydrolasers), particle blasters, scabblers, needlers, spallers, paving and rock breakers, ram hoes, etc. The particular method used depends on several factors: surface and area involved; depth of contamination; cost and availability of equipment; usage safety and radiological control; and waste generated

Beaufort Sea deep-water gas hydrate recovery from a seafloor mound in a region of widespread BSR occurrence

Science.gov (United States)

Hart, Patrick E.; Pohlman, John W.; Lorenson, T.D.; Edwards, Brian D.

2011-01-01

Gas hydrate was recovered from the Alaskan Beaufort Sea slope north of Camden Bay in August 2010 during a U.S. Coast Guard Cutter Healy expedition (USCG cruise ID HLY1002) under the direction of the U.S. Geological Survey (USGS). Interpretation of multichannel seismic (MCS) reflection data collected in 1977 by the USGS across the Beaufort Sea continental margin identified a regional bottom simulating reflection (BSR), indicating that a large segment of the Beaufort Sea slope is underlain by gas hydrate. During HLY1002, gas hydrate was sampled by serendipity with a piston core targeting a steep-sided bathymetric high originally thought to be an outcrop of older, exposed strata. The feature cored is an approximately 1100m diameter, 130 m high conical mound, referred to here as the Canning Seafloor Mound (CSM), which overlies the crest of a buried anticline in a region of sub-parallel compressional folds beneath the eastern Beaufort outer slope. An MCS profile shows a prominent BSR upslope and downslope from the mound. The absence of a BSR beneath the CSM and occurrence of gas hydrate near the summit indicates that free gas has migrated via deep-rooted thrust faults or by structural focusing up the flanks of the anticline to the seafloor. Gas hydrate recovered from near the CSM summit at a subbottom depth of about 5.7 meters in a water depth of 2538 m was of nodular and vein-filling morphology. Although the hydrate was not preserved, residual gas from the core liner contained >95% methane by volume when corrected for atmospheric contamination. The presence of trace C4+hydrocarbons (extrusion contributing to the development of the mound. Blister-like inflation of the seafloor caused by formation and accumulation of shallow hydrate lenses is also a likely factor in CSM growth. Pore water analysis shows the sulfate-methane transition to be very shallow (0-1 mbsf), also supporting an active high-flux interpretation. Pore water with chloride concentrations as low as 160 m

The role of fire on soil mounds and surface roughness in the Mojave Desert

Science.gov (United States)

Soulard, Christopher E.; Esque, Todd C.; Bedford, David R.; Bond, Sandra

2013-01-01

A fundamental question in arid land management centers on understanding the long-term effects of fire on desert ecosystems. To assess the effects of fire on surface topography, soil roughness, and vegetation, we used terrestrial (ground-based) LiDAR to quantify the differences between burned and unburned surfaces by creating a series of high-resolution vegetation structure and bare-earth surface models for six sample plots in the Grand Canyon-Parashant National Monument, Arizona. We find that 11 years following prescribed burns, mound volumes, plant heights, and soil-surface roughness were significantly lower on burned relative to unburned plots. Results also suggest a linkage between vegetation and soil mounds, either through accretion or erosion mechanisms such as wind and/or water erosion. The biogeomorphic implications of fire-induced changes are significant. Reduced plant cover and altered soil surfaces from fire likely influence seed residence times, inhibit seed germination and plant establishment, and affect other ecohydrological processes.

High-Resolution Topographic Analyses of Mounds in Southern Acidalia Planitia, Mars: Implications for Possible Mud Volcanism in Submarine and Subaerial Environments

Directory of Open Access Journals (Sweden)

Ryodo Hemmi

2018-04-01

Full Text Available A northern ocean of Mars is still debated and, if it existed, it may have accompanied valley networks and/or outflow channels, which may have led to the emplacement of a large amount of water to the northern lowlands during the Noachian and/or Hesperian times. However, it is unclear how and under what conditions (submarine or subaerial geologic features such as mounds and giant polygons formed in the northern lowlands. The densely-distributed mounds in Chryse and Acidalia Planitia, >1000 km-wide basins of the northern plains, were suggested to be ancient mud volcanoes formed in an aqueous setting, which is controversial (i.e., mud vs. igneous and submarine vs. subaerial. However, these mounds have not been quantitatively well characterized, particularly with respect to their detailed topography. Here we generated forty digital elevation models (DEMs with resolution of up to 1 m/pixel from High Resolution Imaging Science Experiment (HiRISE stereo image pairs, and we accurately measured the morphometric parameters of ~1300 mounds within the southern part of the Acidalia basin. Their heights and diameters resulted in good accordance with those of mud and igneous volcanoes in submarine/subaerial settings on Earth. Maximum depths of their source reservoirs vary from ~30 to ~450 m for a subaqueous setting and from ~110 to ~860 m for a subaerial setting, both of which are consistent with fluid expulsion from the ~100–4500 m-thick flood deposits (Vastitas Borealis Formation, VBF. On the basis of the morphometric values, we estimated rheological properties of materials forming the mounds and found them consistent with a mud flow origin, which does not rule out an igneous origin. The conditions of possible submarine mud or igneous volcanoes may have harbored less hazardous environments for past life on Mars than those on an ocean-free surface.

Excavation and aggregation as organizing factors in de novo construction by mound-building termites.

Science.gov (United States)

Green, Ben; Bardunias, Paul; Turner, J Scott; Nagpal, Radhika; Werfel, Justin

2017-06-14

Termites construct complex mounds that are orders of magnitude larger than any individual and fulfil a variety of functional roles. Yet the processes through which these mounds are built, and by which the insects organize their efforts, remain poorly understood. The traditional understanding focuses on stigmergy, a form of indirect communication in which actions that change the environment provide cues that influence future work. Termite construction has long been thought to be organized via a putative 'cement pheromone': a chemical added to deposited soil that stimulates further deposition in the same area, thus creating a positive feedback loop whereby coherent structures are built up. To investigate the detailed mechanisms and behaviours through which termites self-organize the early stages of mound construction, we tracked the motion and behaviour of major workers from two Macrotermes species in experimental arenas. Rather than a construction process focused on accumulation of depositions, as models based on cement pheromone would suggest, our results indicated that the primary organizing mechanisms were based on excavation. Digging activity was focused on a small number of excavation sites, which in turn provided templates for soil deposition. This behaviour was mediated by a mechanism of aggregation, with termites being more likely to join in the work at an excavation site as the number of termites presently working at that site increased. Statistical analyses showed that this aggregation mechanism was a response to active digging, distinct from and unrelated to putative chemical cues that stimulate deposition. Agent-based simulations quantitatively supported the interpretation that the early stage of de novo construction is primarily organized by excavation and aggregation activity rather than by stigmergic deposition. © 2017 The Author(s).

A case of 18p deletion syndrome after blepharoplasty

Directory of Open Access Journals (Sweden)

Xu LJ

2017-01-01

Full Text Available Li-juan Xu,1 Lv-xian Wu,2 Qing Yuan,3 Zhi-gang Lv,1 Xue-yan Jiang2 1Department of Opthalmology, 2Department of Pediatrics, 3Department of Clinical Laboratory, Jinhua Central Hospital, Jinhua, Zhejiang, People’s Republic of China Objective: The deletion of the short arm of chromosome 18 is thought to be one of the rare chromosomal aberrations. Here, we report a case to review this disease.Case report: The proband is a five-and-a-half-year-old girl who has had phenotypes manifested mainly by ptosis, broad face, broad neck with low posterior hairline, mental retardation, short stature, and other malformations. Chromosomal analysis for her mother showed a normal karyotype. Her father and younger brother were phenotypically normal.Result: Phenotypical features were quite similar throughout other cases and in accordance with the usual phenotype of del(18p suggested within the same cases and among the del(18p cases described. She underwent blepharoplasty, which improved her appearance.Conclusion: 18p deletion syndrome is diagnosed by gene analysis. Plastic surgeries for improving the appearance might be an option for these patients. Keywords: chromosome, deletion, blepharoplasty

The relationship between termite mound CH₄/CO₂ emissions and internal concentration ratios are species specific

OpenAIRE

B. Fest; S. K. Arndt; L. B. Hutley; S. J. Livesley; H. Jamali

2012-01-01

We investigated the relative importance of CH4 and CO2 fluxes from soil and termite mounds at four different sites in the tropical savannas of northern Australia near Darwin and assessed different methods to indirectly predict CH4 fluxes based on CO2 fluxes and internal gas concentrations. The annual flux from termite mounds and surrounding soil was dominated by CO2 with large variations among sites. On a carbon dioxide equivalent (CO2-e) basis, annual CH4 flux estimate...

An Alternative Stability Equation For Rock Armoured Rubble Mound Breakwaters

DEFF Research Database (Denmark)

Hald, Tue; Burcharth, H. F.

2000-01-01

Rubble mound breakwaters are by far the most common type of breakwater, the importance of which is clearly reflected in the vast amount of published research. Especially, the hydraulic stability of the main armour layer has been studied in order to obtain reliable design equations. It should...... equations and model test results still exists. When turning toward prototype the situation is even worse. With the objective to reduce some of the variability an alternative approach based on force considerations is presented. The paper will describe a new stability equation for rock armoured slopes derived...

Scour at the round head of a rubble-mound breakwater

DEFF Research Database (Denmark)

Fredsøe, Jørgen; Sumer, B. Mutlu

1997-01-01

This study complements the investigation on scour around the head of a breakwater, reported in the companion paper where the case of vertical-wall breakwater was considered, The present study deals with the case of rubble-mound breakwater. Two key mechanisms with regard to the scour processes......, and the acceleration due to gravity, g, appears to be the main governing parameter regarding the breaker-induced scour. The scour depth increases with increasing values of these parameters. The conventional stone protection is investigated in the study. An empirical formula is developed for the extent...

The fate of deleted DNA produced during programmed genomic deletion events in Tetrahymena thermophila.

Science.gov (United States)

Saveliev, S V; Cox, M M

1994-01-01

Thousands of DNA deletion events occur during macronuclear development in the ciliate Tetrahymena thermophila. In two deleted genomic regions, designated M and R, the eliminated sequences form circles that can be detected by PCR. However, the circles are not normal products of the reaction pathway. The circular forms occur at very low levels in conjugating cells, but are stable. Sequencing analysis showed that many of the circles (as many as 50% of those examined) reflected a precise deletion in the M and R regions. The remaining circles were either smaller or larger and contained varying lengths of sequences derived from the chromosomal DNA surrounding the eliminated region. The chromosomal junctions left behind after deletion were more precise, although deletions in either the M or R regions can generate any of several alternative junctions (1). Some new chromosomal junctions were detected in the present study. The results suggest that the deleted segment is released as a linear DNA species that is degraded rapidly. The species is only rarely converted to the stable circles we detect. The deletion mechanism is different from those proposed for deletion events in hypotrichous ciliates (2-4), and does not reflect a conservative site-specific recombination process such as that promoted by the bacteriophage lambda integrase (5). Images PMID:7838724

Whole genome HBV deletion profiles and the accumulation of preS deletion mutant during antiviral treatment

Science.gov (United States)

2012-01-01

Background Hepatitis B virus (HBV), because of its error-prone viral polymerase, has a high mutation rate leading to widespread substitutions, deletions, and insertions in the HBV genome. Deletions may significantly change viral biological features complicating the progression of liver diseases. However, the clinical conditions correlating to the accumulation of deleted mutants remain unclear. In this study, we explored HBV deletion patterns and their association with disease status and antiviral treatment by performing whole genome sequencing on samples from 51 hepatitis B patients and by monitoring changes in deletion variants during treatment. Clone sequencing was used to analyze preS regions in another cohort of 52 patients. Results Among the core, preS, and basic core promoter (BCP) deletion hotspots, we identified preS to have the highest frequency and the most complex deletion pattern using whole genome sequencing. Further clone sequencing analysis on preS identified 70 deletions which were classified into 4 types, the most common being preS2. Also, in contrast to the core and BCP regions, most preS deletions were in-frame. Most deletions interrupted viral surface epitopes, and are possibly involved in evading immuno-surveillance. Among various clinical factors examined, logistic regression showed that antiviral medication affected the accumulation of deletion mutants (OR = 6.81, 95% CI = 1.296 ~ 35.817, P = 0.023). In chronic carriers of the virus, and individuals with chronic hepatitis, the deletion rate was significantly higher in the antiviral treatment group (Fisher exact test, P = 0.007). Particularly, preS2 deletions were associated with the usage of nucleos(t)ide analog therapy (Fisher exact test, P = 0.023). Dynamic increases in preS1 or preS2 deletions were also observed in quasispecies from samples taken from patients before and after three months of ADV therapy. In vitro experiments demonstrated that preS2 deletions alone

Frequency of heterozygous TET2 deletions in myeloproliferative neoplasms

Directory of Open Access Journals (Sweden)

Joseph Tripodi

2010-09-01

Full Text Available Joseph Tripodi1, Ronald Hoffman1, Vesna Najfeld2, Rona Weinberg31The Myeloproliferative Disorders Program, Tisch Cancer Institute, Department of Medicine and 2Department of Medicine and Pathology, Mount Sinai School of Medicine, 3The Myeloproliferative Disorders Program, Cellular Therapy Laboratory, The New York Blood Center, New York, NY, USAAbstract: The Philadelphia chromosome (Ph-negative myeloproliferative neoplasms (MPNs, including polycythemia vera, essential thrombocythemia, and primary myelofibrosis, are a group of clonal hematopoietic stem cell disorders with overlapping clinical and cytogenetic features and a variable tendency to evolve into acute leukemia. These diseases not only share overlapping chromosomal abnormalities but also a number of acquired somatic mutations. Recently, mutations in a putative tumor suppressor gene, ten-eleven translocation 2 (TET2 on chromosome 4q24 have been identified in 12% of patients with MPN. Additionally 4q24 chromosomal rearrangements in MPN, including TET2 deletions, have also been observed using conventional cytogenetics. The goal of this study was to investigate the frequency of genomic TET2 rearrangements in MPN using fluorescence in situ hybridization as a more sensitive method for screening and identifying genomic deletions. Among 146 MPN patients, we identified two patients (1.4% who showed a common 4q24 deletion, including TET2. Our observations also indicated that the frequency of TET2 deletion is increased in patients with an abnormal karyotype (5%.Keywords: TET2, myeloproliferative neoplasms, fluorescence in situ hybridization, cytogenetics

Innovative rubble mound breakwaters for wave energy conversion

International Nuclear Information System (INIS)

Contestabile, Pasquale; Vicinanza, Diego; Iuppa, Claudio; Cavallaro, Luca; Foti, Enrico

2015-01-01

This paper presents a new Wave Energy Converter named Overtopping BReakwater for Energy Conversion (OBREC) which consists of a rubble mound breakwater with a front reservoir designed with the aim of capturing the wave overtopping in order to produce electricity. The energy is extracted via low head turbines, using the difference in water levels between the reservoir and the mean sea water level. The new design should be capable of adding a revenue generation function to a breakwater while adding cost sharing benefits due to integration. The design can be applied to harbour expansions, existing breakwater maintenance or upgrades due to climate change for a relatively low cost, considering the breakwater would be built regardless of the inclusion of a WEC [it

Origin of mounds in the Pantanal wetlands: An integrated approach between geomorphology, pedogenesis, ecology and soil micromorphology.

Directory of Open Access Journals (Sweden)

Jairo Calderari de Oliveira Junior

Full Text Available Vegetated mounds are an important geomorphological feature of the Pantanal, where the influence of floods dictates not only hydropedological processes, but also the distribution and ecology of the flora and fauna. This work aimed to identify factors and processes that influence the formation and spatial distribution of the mounds, which are commonly associated with termite activity. In order to characterize pedological processes, macro and micro morphological descriptions, satellite image interpretation, dating of the sandy sedimentary material using OSL and carbon dating using 14C AMS were carried out. This dating of the materials indicates that the sediments in which the soils were formed were deposited during the Pleistocene, while the carbonates are from the Holocene. The basin-like format of the laminar structures suggests that part of the more clayey material was deposited in lacustrine environments. The more humid climate in the Holocene intensified argilluviation, which at an advanced stage, led to a more pronounced textural gradient, reducing drainage and leading to ferrolysis and thickening of the E horizon. Besides pedogenic processes, more erosive flooding during the Holocene began reducing and rounding the landscape's more elevated structures (paleolevees. In the final stage, these structures were occupied by termites to shelter from flooding. Thereafter, the bio-cementation action of the termite nests has increased the resistance of the vegetated mounds to processes of erosion.

Origin of mounds in the Pantanal wetlands: An integrated approach between geomorphology, pedogenesis, ecology and soil micromorphology.

Science.gov (United States)

de Oliveira Junior, Jairo Calderari; Beirigo, Raphael Moreira; Chiapini, Mariane; do Nascimento, Alexandre Ferreira; Couto, Eduardo Guimarães; Vidal-Torrado, Pablo

2017-01-01

Vegetated mounds are an important geomorphological feature of the Pantanal, where the influence of floods dictates not only hydropedological processes, but also the distribution and ecology of the flora and fauna. This work aimed to identify factors and processes that influence the formation and spatial distribution of the mounds, which are commonly associated with termite activity. In order to characterize pedological processes, macro and micro morphological descriptions, satellite image interpretation, dating of the sandy sedimentary material using OSL and carbon dating using 14C AMS were carried out. This dating of the materials indicates that the sediments in which the soils were formed were deposited during the Pleistocene, while the carbonates are from the Holocene. The basin-like format of the laminar structures suggests that part of the more clayey material was deposited in lacustrine environments. The more humid climate in the Holocene intensified argilluviation, which at an advanced stage, led to a more pronounced textural gradient, reducing drainage and leading to ferrolysis and thickening of the E horizon. Besides pedogenic processes, more erosive flooding during the Holocene began reducing and rounding the landscape's more elevated structures (paleolevees). In the final stage, these structures were occupied by termites to shelter from flooding. Thereafter, the bio-cementation action of the termite nests has increased the resistance of the vegetated mounds to processes of erosion.

Preparation of substituting seaweed field mounds accompanying site preparation for No.3 plant in Ikata Nuclear Power Station

International Nuclear Information System (INIS)

Ishihara, Hisashi; Oshima, Teruhiko; Fujisaki, Yuichi; Saeki, Taketoshi

1987-01-01

Shikoku Electric Power Co., Inc. is constructing No.3 plant adjacently to No.1 and No.2 plants in operation in Ikata Nuclear Power Station. In the coastal area of Iyo-nada, many seaweed fields are distributed, which are important biologically and for fishery. In the works of site preparation for No.3 plant, a part of the site is created by reclamation of sea area, therefore the natural seaweed fields in the area disappear. From the viewpoint of various circumstances and environment preservation, it was decided to create about 60,000 m 2 of seaweed field mounds on the seabed around the site as the substitute for disappearing natural seaweed fields. The Seaweed Field Study Group composed of the men of learning and experience was organized to obtain the guidance on the possibility of creating artificial seaweed fields, the techniques for creation and the effect on environment accompanying the creation of mounds. The creation works were started in October, 1985, and are in progress smoothly utilizing effectively the stones and rocks cut in the site preparation works. The topographic and geological features, sea conditions, the present state of seaweed fields, the experiment on creating artificial seaweed fields, the design and construction of mounds and others are reported. (Kako, I.)

Schizophrenia and chromosomal deletions

Energy Technology Data Exchange (ETDEWEB)

Lindsay, E.A.; Baldini, A. [Baylor College of Medicine, Houston, TX (United States); Morris, M. A. [Univ. of Geneva School of Medicine, NY (United States)] [and others

1995-06-01

Recent genetic linkage analysis studies have suggested the presence of a schizophrenia locus on the chromosomal region 22q11-q13. Schizophrenia has also been frequently observed in patients affected with velo-cardio-facial syndrome (VCFS), a disorder frequently associated with deletions within 22q11.1. It has been hypothesized that psychosis in VCFS may be due to deletion of the catechol-o-methyl transferase gene. Prompted by these observations, we screened for 22q11 deletions in a population of 100 schizophrenics selected from the Maryland Epidemiological Sample. Our results show that there are schizophrenic patients carrying a deletion of 22q11.1 and a mild VCFS phenotype that might remain unrecognized. These findings should encourage a search for a schizophrenia-susceptibility gene within the deleted region and alert those in clinical practice to the possible presence of a mild VCFS phenotype associated with schizophrenia. 9 refs.

What Can We Learn From Point-of-Care Blood Glucose Values Deleted and Repeated by Nurses?

Science.gov (United States)

Corl, Dawn; Yin, Tom; Ulibarri, May; Lien, Heather; Tylee, Tracy; Chao, Jing; Wisse, Brent E

2018-03-01

Hospitals rely on point-of-care (POC) blood glucose (BG) values to guide important decisions related to insulin administration and glycemic control. Evaluation of POC BG in hospitalized patients is associated with measurement and operator errors. Based on a previous quality improvement (QI) project we introduced an option for operators to delete and repeat POC BG values suspected as erroneous. The current project evaluated our experience with deleted POC BG values over a 2-year period. A retrospective QI project included all patients hospitalized at two regional academic medical centers in the Pacific Northwest during 2014 and 2015. Laboratory Medicine POC BG data were reviewed to evaluate all inpatient episodes of deleted and repeated POC BG. Inpatient operators choose to delete and repeat only 0.8% of all POC BG tests. Hypoglycemic and extreme hyperglycemic BG values are more likely to be deleted and repeated. Of initial values values (18% of all values) are errors. Of values >400 mg/dL, 40% of deleted values (5% of all values) are errors. Not all repeated POC BG values are first deleted. Optimal use of the option to delete and repeat POC BG values values that are measurement/operator errors. Eliminating these errors significantly reduces documented rates of severe hypoglycemia and hyperglycemia, and has the potential to improve patient safety.

Interactive effects of soil-dwelling ants, ant mounds and simulated grazing on local plant community composition

NARCIS (Netherlands)

Veen, G.F.; Olff, H.

2011-01-01

Interactions between aboveground vertebrate herbivores and subterranean yellow meadow ants (Lasius flavus) can drive plant community patterns in grassland ecosystems. Here, we study the relative importance of the presence of ants (L. flavus) and ant mounds under different simulated grazing regimes

PCR detection of retinoblastoma gene deletions in radiation-induced mouse lung adenocarcinomas

International Nuclear Information System (INIS)

Churchill, M.E.; Gemmell, M.A.; Woloschak, G.E.

1993-01-01

From 1971 to 1986, Argonne National Laboratory conducted a series of large-scale studies of tumor incidence in 40,000 BCF 1 mice irradiated with 60 Co γ rays or JANUS fission-spectrum neutrons; normal and tumor tissues from mice in these studies were preserved in paraffin blocks. A polymerase chain reaction (PCR) technique has been developed to detect deletions in the mouse retinoblastoma (mRb) gene in the paraffin-embedded tissues. Microtomed sections were used as the DNA source in PCR reaction mixtures. Six mRb gene exon fragments were amplified in a 40-cycle, 3-temperature PCR protocol. The absence of any of these fragments (relative to control PCR products) on a Southern blot indicated a deletion of that portion of the mRb gene. The tumors chosen for analysis were lung adenocarcinomas that were judged to be the cause of death in post-mortem analyses. Spontaneous tumors as well as those from irradiated mice (569 cGy of 60 Co γ rays or 60 cGy of JANUS neutrons, doses that have been found to have approximately equal biological effectiveness in the BCF, mouse) were analyzed for mRb deletions. In all normal mouse tissues studies, all six mRb exon fragments were present on Southem blots. Tumors in six neutron-irradiated mice also had no mRb deletions. However, I of 6 tumors from γ-irradiated mice and 6 of 18 spontaneous tumors from unirradiated mice had a deletion in one or both mRb alleles. All deletions detected were in the 5' region of the mRb gene

Deletion mutations of bacteriophage

International Nuclear Information System (INIS)

Ryo, Yeikou

1975-01-01

Resolution of mutation mechanism with structural changes of DNA was discussed through the studies using bacteriophage lambda. One of deletion mutations inductions of phage lambda is the irradiation of ultraviolet ray. It is not clear if the inductions are caused by errors in reparation of ultraviolet-induced damage or by the activation of int gene. Because the effective site of int gene lies within the regions unnecessary for existing, it is considered that int gene is connected to deletion mutations induction. A certain system using prophage complementarity enables to detect deletion mutations at essential hereditary sites and to solve the relations of deletion mutations with other recombination system, DNA reproduction and repairment system. Duplication and multiplication of hereditary elements were discussed. If lambda deletion mutations of the system, which can control recombination, reproduction and repairment of added DNA, are constructed, mutations mechanism with great changes of DNA structure can be solved by phage lambda. (Ichikawa, K.)

Partial Safety Factors for Rubble Mound Breakwaters

DEFF Research Database (Denmark)

Sørensen, John Dalsgaard; Burcharth, H. F.; Christiani, E.

1995-01-01

On the basis of the failure modes formulated in the various subtasks calibration of partial safety factors are described in this paper. The partial safety factors can be used to design breakwaters under quite different design conditions, namely probabilities of failure from 0.01 to 0.4, design...... lifetimes from 20 to 100 years and different qualities of wave data. A code of practice where safety is taken into account using partial safety factors is called a level I code. The partial safety factors are calibrated using First Order Reliability Methods (FORM, see Madsen et al. [1]) where...... in section 3. First Order Reliability Methods are described in section 4, and in section 5 it is shown how partial safety factors can be introduced and calibrated. The format of a code for design and analysis of rubble mound breakwaters is discussed in section 6. The mathematical formulation of the limit...

Strategies for state-dependent quantum deleting

International Nuclear Information System (INIS)

Song Wei; Yang Ming; Cao Zhuoliang

2004-01-01

A quantum state-dependent quantum deleting machine is constructed. We obtain a upper bound of the global fidelity on N-to-M quantum deleting from a set of K non-orthogonal states. Quantum networks are constructed for the above state-dependent quantum deleting machine when K=2. Our deleting protocol only involves a unitary interaction among the initial copies, with no ancilla. We also present some analogies between quantum cloning and deleting

Cytosine deletion at AP2-box region of HSP70 promoter and its ...

Indian Academy of Sciences (India)

Cytosine deletion at AP2-box region of HSP70 promoter and its influence on semen quality traits in crossbred bulls ... Laboratory, ICAR-Central Institute for Research on Cattle, Meerut 250 001, India; School of Atmospheric Stress Management, ICAR-National Institute of Abiotic Stress Management, Baramati 413 115, India ...

Klf5 deletion promotes Pten deletion-initiated luminal-type mouse prostate tumors through multiple oncogenic signaling pathways.

Science.gov (United States)

Xing, Changsheng; Ci, Xinpei; Sun, Xiaodong; Fu, Xiaoying; Zhang, Zhiqian; Dong, Eric N; Hao, Zhao-Zhe; Dong, Jin-Tang

2014-11-01

Krüppel-like factor 5 (KLF5) regulates multiple biologic processes. Its function in tumorigenesis appears contradictory though, showing both tumor suppressor and tumor promoting activities. In this study, we examined whether and how Klf5 functions in prostatic tumorigenesis using mice with prostate-specific deletion of Klf5 and phosphatase and tensin homolog (Pten), both of which are frequently inactivated in human prostate cancer. Histologic analysis demonstrated that when one Pten allele was deleted, which causes mouse prostatic intraepithelial neoplasia (mPIN), Klf5 deletion accelerated the emergence and progression of mPIN. When both Pten alleles were deleted, which causes prostate cancer, Klf5 deletion promoted tumor growth, increased cell proliferation, and caused more severe morphologic and molecular alterations. Homozygous deletion of Klf5 was more effective than hemizygous deletion. Unexpectedly, while Pten deletion alone expanded basal cell population in a tumor as reported, Klf5 deletion in the Pten-null background clearly reduced basal cell population while expanding luminal cell population. Global gene expression profiling, pathway analysis, and experimental validation indicate that multiple mechanisms could mediate the tumor-promoting effect of Klf5 deletion, including the up-regulation of epidermal growth factor and its downstream signaling molecules AKT and ERK and the inactivation of the p15 cell cycle inhibitor. KLF5 also appears to cooperate with several transcription factors, including CREB1, Sp1, Myc, ER and AR, to regulate gene expression. These findings validate the tumor suppressor function of KLF5. They also yield a mouse model that shares two common genetic alterations with human prostate cancer-mutation/deletion of Pten and deletion of Klf5.

Conductive heat flow at the TAG Active Hydrothermal Mound: Results from 1993-1995 submersible surveys

Science.gov (United States)

Becker, K.; Von Herzen, R.; Kirklin, J.; Evans, R.; Kadko, D.; Kinoshita, M.; Matsubayashi, O.; Mills, R.; Schultz, A.; Rona, P.

We report 70 measurements of conductive heat flow at the 50-m-high, 200-m-diameter TAG active hydrothermal mound, made during submersible surveys with Alvin in 1993 and 1995 and Shinkai 6500 in 1994. The stations were all measured with 5-thermistor, 0.6- or 1-m-long Alvin heat flow probes, which are capable of determining both gradient and thermal conductivity, and were transponder-navigated to an estimated accuracy of ±5-10 m relative to the 10-m-diameter central complex of black smokers. Within 20 m of this complex, conductive heat flow values are extremely variable (0.1- > 100 W/m²), which can only be due to local spatial and possible temporal variability in the immediate vicinity of the vigorous discharge sites. A similar local variability is suggested in the “Kremlin” area of white smokers to the southeast of the black smoker complex. On the south and southeast side of the mound, there is very high heat flow (3.7- > 25 W/m²) on the sedimented terraces that slope down from the Kremlin area. Heat flow is also high (0.3-3 W/m²) in the pelagic carbonate sediments on the surrounding seafloor within a few tens of meters of the southwest, northwest, and northeast sides of the mound. On the west side of the sulfide rubble plateau that surrounds the central black smoker peak, there is a coherent belt of very low heat flow (smokers, suggestive of local, shallow recharge of bottom water. The three submersible surveys spanned nearly two years, but showed no indication of any temporal variability in conductive heat flow over this time scale, whether natural or induced by ODP drilling in 1994.

Targeted Genome Sequencing Reveals Varicella-Zoster Virus Open Reading Frame 12 Deletion.

Science.gov (United States)

Cohrs, Randall J; Lee, Katherine S; Beach, Addilynn; Sanford, Bridget; Baird, Nicholas L; Como, Christina; Graybill, Chiharu; Jones, Dallas; Tekeste, Eden; Ballard, Mitchell; Chen, Xiaomi; Yalacki, David; Frietze, Seth; Jones, Kenneth; Lenac Rovis, Tihana; Jonjić, Stipan; Haas, Jürgen; Gilden, Don

2017-10-15

The neurotropic herpesvirus varicella-zoster virus (VZV) establishes a lifelong latent infection in humans following primary infection. The low abundance of VZV nucleic acids in human neurons has hindered an understanding of the mechanisms that regulate viral gene transcription during latency. To overcome this critical barrier, we optimized a targeted capture protocol to enrich VZV DNA and cDNA prior to whole-genome/transcriptome sequence analysis. Since the VZV genome is remarkably stable, it was surprising to detect that VZV32, a VZV laboratory strain with no discernible growth defect in tissue culture, contained a 2,158-bp deletion in open reading frame (ORF) 12. Consequently, ORF 12 and 13 protein expression was abolished and Akt phosphorylation was inhibited. The discovery of the ORF 12 deletion, revealed through targeted genome sequencing analysis, points to the need to authenticate the VZV genome when the virus is propagated in tissue culture. IMPORTANCE Viruses isolated from clinical samples often undergo genetic modifications when cultured in the laboratory. Historically, VZV is among the most genetically stable herpesviruses, a notion supported by more than 60 complete genome sequences from multiple isolates and following multiple in vitro passages. However, application of enrichment protocols to targeted genome sequencing revealed the unexpected deletion of a significant portion of VZV ORF 12 following propagation in cultured human fibroblast cells. While the enrichment protocol did not introduce bias in either the virus genome or transcriptome, the findings indicate the need for authentication of VZV by sequencing when the virus is propagated in tissue culture. Copyright © 2017 American Society for Microbiology.

Classification of burial rituals of the cemeteries without burial mounds in regions of the Tsarevskoe ancient settlement

Directory of Open Access Journals (Sweden)

Nedashkovsky Leonard F.

2015-09-01

Full Text Available Article is dedicated to analysis of burial rituals of the Golden Horde cemeteries without burial mounds in surroundings of the Tsarevskoe ancient settlement. 51 burials (19.9% of total number in mausoleums or in crypts can be attributed as burials of the Golden Horde aristocracy. In the graves found without burial mounds the most wide-spread were of western, south-western and north-western (which could be considered as azimuth deviation from western orientations (they comprise 94.9% of all burials, which are peculiar to the majority of the urban Muslim population of the Golden Horde. However it must be considered that 56 from these burials (21.9% of total number are burials of necropolis of the population of Old Russian settlement of the Vodyanskoe site. Comparing the aristocratic (in mausoleums and crypts burials without burial mounds in the Lower Volga, it is possible conclude that their percentage was significantly higher in the region of the Tsarevskoe settlement, than in other regions; these data allow to assume here the greatest density of residence of settled elite of the Golden Horde. The smallest share of Muslim burials in coffins in the Lower Volga (44.9% and the maximal one of burials with grave goods (13.6% recorded in the region of the Tsarevskoe site. Burial grounds in the region of the Tsarevskoe ancient settlement were in vicinity of the settlements, that is clearly testified about the degree of territorial closeness of cemeteries of settled population of the Golden Horde with urban and rural settlements of the considered period.

Microfossils, a Key to Unravel Cold-Water Carbonate Mound Evolution through Time: Evidence from the Eastern Alboran Sea.

Directory of Open Access Journals (Sweden)

Claudio Stalder

Full Text Available Cold-water coral (CWC ecosystems occur worldwide and play a major role in the ocean's carbonate budget and atmospheric CO2 balance since the Danian (~65 m.y. ago. However their temporal and spatial evolution against climatic and oceanographic variability is still unclear. For the first time, we combine the main macrofaunal components of a sediment core from a CWC mound of the Melilla Mounds Field in the Eastern Alboran Sea with the associated microfauna and we highlight the importance of foraminifera and ostracods as indicators of CWC mound evolution in the paleorecord. Abundances of macrofauna along the core reveal alternating periods dominated by distinct CWC taxa (mostly Lophelia pertusa, Madrepora oculata that correspond to major shifts in foraminiferal and ostracod assemblages. The period dominated by M. oculata coincides with a period characterized by increased export of refractory organic matter to the seafloor and rather unstable oceanographic conditions at the benthic boundary layer with periodically decreased water energy and oxygenation, variable bottom water temperature/density and increased sediment flow. The microfaunal and geochemical data strongly suggest that M. oculata and in particular Dendrophylliidae show a higher tolerance to environmental changes than L. pertusa. Finally, we show evidence for sustained CWC growth during the Alleröd-Younger-Dryas in the Eastern Alboran Sea and that this period corresponds to stable benthic conditions with cold/dense and well oxygenated bottom waters, high fluxes of labile organic matter and relatively strong bottom currents.

Cold-seep-driven carbonate deposits at the Central American forearc: contrasting evolution and timing in escarpment and mound settings

Science.gov (United States)

Liebetrau, V.; Augustin, N.; Kutterolf, S.; Schmidt, M.; Eisenhauer, A.; Garbe-Schönberg, D.; Weinrebe, W.

2014-10-01

Continuous surface cores of cold-seep carbonates were recovered offshore Pacific Nicaragua and Costa Rica from 800 to 1,500-m water depths (Meteor 66/3) in order to decipher their evolution and methane enriched fluid emanation in contrasting geological settings. Cores from the mounds Iguana, Perezoso, Baula V and from the Jaco Scarp escarpment were used for a multi-method approach. For both settings aragonite was revealed as dominant authigenic carbonate phase in vein fillings and matrix cementation, followed by Mg-calcite as second most abundant. This common precipitation process of CaCO3 polymorphs could be ascribed as indirectly driven by chemical changes of the advecting pore water due to anaerobic oxidation of methane. A more direct influence of seep-related microbial activity on the authigenic mineral assemblage in both settings is probably reflected by the observed minor amounts of dolomite and a dolomite-like CaMg carbonate (MgCO3 ~ 42 %). δ13C data of Jaco Scarp samples are significantly lower (-43 to -56 ‰ PDB) than for mound samples (-22 to -36 ‰ PDB), indicating differences in fluid composition and origin. Noteworthy, δ18O values of Scarp samples correlate most closely with the ocean signature at their time of formation. Documenting the archive potential, a high resolution case study of a mound core implies at least 40 changes in fluid supply within a time interval of approximately 14 ky. As most striking difference, the age data indicate a late-stage downward-progressing cementation front for all three mound cap structures (approx. 2-5 cm/ky), but a significantly faster upward carbonate buildup in the bulging sediments on top of the scarp environment (approx. 120 cm/ky). The latter data set leads to the hypothesis of chemoherm carbonate emplacement in accord with reported sedimentation rates until decompression of the advective fluid system, probably caused by the Jaco Scarp landslide and dating this to approximately 13,000 years ago.

Optimal reproduction strategies in two species of mound-building termites.

Science.gov (United States)

Cameron, David A; Ivers, David J; Evans, Theodore A; Myerscough, Mary R

2008-01-01

We formulate a mathematical model for food collection and production of workers and nymphs in 2 species of mound building termites. We maximise the number of nymphs (reproductives) produced by each colony over its lifetime with respect to the proportion of eggs that hatch as nymphs as opposed to workers. The results predict that food storage has a very important influence on the pattern of nymph and worker production. Food storage affects the part of the year that nymph production dominates, whether nymphs and workers are produced at the same time or not, and the existence of a final phase in the colony's life when a very large number of nymphs but no workers are produced.

Comparative genomic analysis of the gut bacterium Bifidobacterium longum reveals loci susceptible to deletion during pure culture growth

Directory of Open Access Journals (Sweden)

Shakhova VV

2008-05-01

Full Text Available Abstract Background Bifidobacteria are frequently proposed to be associated with good intestinal health primarily because of their overriding dominance in the feces of breast fed infants. However, clinical feeding studies with exogenous bifidobacteria show they don't remain in the intestine, suggesting they may lose competitive fitness when grown outside the gut. Results To further the understanding of genetic attenuation that may be occurring in bifidobacteria cultures, we obtained the complete genome sequence of an intestinal isolate, Bifidobacterium longum DJO10A that was minimally cultured in the laboratory, and compared it to that of a culture collection strain, B. longum NCC2705. This comparison revealed colinear genomes that exhibited high sequence identity, except for the presence of 17 unique DNA regions in strain DJO10A and six in strain NCC2705. While the majority of these unique regions encoded proteins of diverse function, eight from the DJO10A genome and one from NCC2705, encoded gene clusters predicted to be involved in diverse traits pertinent to the human intestinal environment, specifically oligosaccharide and polyol utilization, arsenic resistance and lantibiotic production. Seven of these unique regions were suggested by a base deviation index analysis to have been precisely deleted from strain NCC2705 and this is substantiated by a DNA remnant from within one of the regions still remaining in the genome of NCC2705 at the same locus. This targeted loss of genomic regions was experimentally validated when growth of the intestinal B. longum in the laboratory for 1,000 generations resulted in two large deletions, one in a lantibiotic encoding region, analogous to a predicted deletion event for NCC2705. A simulated fecal growth study showed a significant reduced competitive ability of this deletion strain against Clostridium difficile and E. coli. The deleted region was between two IS30 elements which were experimentally

Timing of mounding for bambara groundnut affects crop development and yield in a rainfed tropical environment

DEFF Research Database (Denmark)

Ouedrago, Mahama; M'bi, Bertin Zagre; Liu, Fulai

2013-01-01

-ecological zone of Burkina Faso were conducted. Yield data confirm the findings from a drier part of Burkina Faso; i.e., mounding of bambara groundnut should not be carried out around the time of flowering. In a semi-arid area, such as Sudan–Sahel agro-ecological zone and with germplasm maturing within 90 days...

Rapid deletion production in fungi via Agrobacterium mediated transformation of OSCAR deletion contructs.

Science.gov (United States)

Precise deletion of gene(s) of interest, while leaving the rest of the genome unchanged, provides the ideal product to determine that particular gene’s function in the living organism. In this protocol we describe the OSCAR method of precise and rapid deletion plasmid construction. OSCAR relies on t...

HbA2 levels in β-thalassaemia carriers with the Filipino β0-deletion: are the levels higher than what is found with non-deletional forms of β0-thalassaemia?

Science.gov (United States)

George, E; Teh, Lai Kuan; Tan, Jama; Lai, Mei I; Wong, Lily

2013-01-01

Classical carriers of β-thalassaemia are identified by a raised HbA2 level. Earlier studies indicated that the Filipino β-deletion has high raised HbA2 levels. The introduction of automated high performance liquid chromatography (HPLC) for thalassaemia screening is an important advance in technology for haematology laboratories. The BioRad Variant II Hb analyser is a common instrument used to quantify HbA2 levels in thalassaemia screening. This study aimed to determine HbA2 levels in carriers of Filipino β-mutation using the BioRad Variant II Hb analyser. The Filipino β-deletion was identified using gap-polymerase chain reaction (PCR) in the parents of transfusion dependent β-thalassaemia patients who were homozygous for the Filipino β-deletion in the indigenous population of Sabah, Malaysia. Hb subtypes were quantified on the BioRad Variant II Hb analyser. Concurrent α-thalassaemia was identified by multiplex gap-PCR for deletions and amplification refractory mutation system (ARMS)-PCR for non-deletional mutations. The mean HbA2 level for Filipino β-thalassaemia trait was 5.9 ± 0.47 and with coinheritance of α-thalassaemia was 6.3 ± 0.44 (-α heterozygous) and 6.7 ± 0.36 (-α homozygous). The HbA2 levels were all >4% in keeping with the findings of classical β-thalassaemia trait and significantly higher than levels seen in non-deletional forms of β-thalassaemia. The HbA2 level measured on the BioRad Variant II Hb analyser was lower than the level in the first description of the Filipino β-thalassaemia. β-thalassaemia trait with coinheritance of α-thalassaemia (-α) is associated with significantly higher HbA2 level.

Remediation workers' exposure assessment feasibility study at the Department of Energy's Mound Site: Phase 1

International Nuclear Information System (INIS)

Stevens, G.W.; Back, D.A.

1997-10-01

The Department of Health and Human Services (DHHS), subsequent to the implementation of a Memorandum of Understanding (MOU) between the Departments of Energy (DOE) and Health and Human Services, conducts a program of independent occupational and environmental research studies with funding from DOE. This document on the DOE Mound site represents the second background site document prepared for the development of the NIOSH project entitled: Exposure Assessment of Hazardous Waste (HW), Decontamination (De), Dismantlement (Di), and Clean Up Workers (CW). The purpose of this document is to assemble information relevant to Remediation Workers performing HW, De, Di, and CW task activities at the DOE Mound site addressing four primary objectives. The objectives are: identification of Remediation Workers performing HW, De, Di, and CW task activities anticipated or in progress from the recent past through the next five to 10 years; demographic definition of the workforce performing these activities; identification of the technologies in use or proposed to be used (including considerations regarding health and safety impact upon the workforce); and assembly of summary information for potential chemical, mixed, and radiological contaminant exposure that may be encountered during these processes

Annual environmental monitoring report: calendar year 1976

International Nuclear Information System (INIS)

Farmer, B.M.; Robinson, B.; Carfagno, D.G.

1977-01-01

The local environment surrounding Mound Laboratory was monitored for tritium and plutonium-238 released by Mound Laboratory. The results are reported for calendar year 1976. The environmental parameters analyzed included air, water, foodstuffs, and silt. The average concentrations of plutonium-238 and tritium were within the stringent standards for radioactive species adopted by the U.S. Energy Research and Development Administration. Data concerning nonradioactive species in air and water are also presented and compared to federal, state, and local standards, where applicable. Although there are no specific standards (RCG) for plutonium-238 and tritium in foodstuffs, the concentrations found, if compared to the water standard, are also a small fraction of the RCG. In addition, there is no evidence of other than minimal reentrainment of radioactive species from silt. Mound Laboratory has undertaken a comprehensive program to bring water supplies into compliance with new U.S. EPA drinking water standards which will be effective June 24, 1977. Mound Laboratory has been granted a National Pollutant Discharge Ellimination System permit. Analyses during 1976 indicate compliance with permit conditions. All results indicated that Mound effluent streams have no significant effect on the Great Miami River and certainly do not cause Ohio Stream Standards to be exceeded. These data demonstrate compliance with various current regulatory agency standards and that the operation of Mound Laboratory has a negligible effect on the environment

Partial deletion 11q

DEFF Research Database (Denmark)

Hertz, Jens Michael; Tommerup, N; Sørensen, F B

1995-01-01

We describe the cytogenetic findings and the dysmorphic features in a stillborn girl with a large de novo terminal deletion of the long arm of chromosome 11. The karyotype was 46,XX,del(11)(q21qter). By reviewing previous reports of deletion 11q, we found that cleft lip and palate are most...

Contributions of gopher mound and casting disturbances to plant community structure in a Cascade Range meadow complex

Science.gov (United States)

M. Case; C.B. Halpern; S.A. Levin

2013-01-01

Pocket gophers (Geomyidae) are major agents of disturbance in North American grasslands. Gopher mounds bury existing plants and influence community structure through various mechanisms. However, in mountain meadows that experience winter snowpack, gophers also create winter castings, smaller tube-shaped deposits, previously ignored in studies of plant–gopher...

Neutron dosimetry program at Mound - problems and solutions

International Nuclear Information System (INIS)

Winegardner, M.K.

1991-01-01

The Mound personnel neutron dosimetry program utilizes TLD albedo technology. The neutron dosimeter design incorporates a two-element spectrometer for site-specific neutron quality determination and empirical application of field neutron calibration factors. Design elements feature two Li(6)F (TLD- 600) chips for neutron detection and one Li(7)F (TLD-700) chip for gamma compensation of the TLD- 600 chips. One TLD-600 chip is Cadmium shielded on the front side of the dosimeter, the other is Cadmium shielded from the back side. Tin filters are placed opposite of the Cadmium shield on each of the TLD-600 chips and on both sides of the TLD-700 chip for symmetrically equivalent gamma absorption characteristics. Neutron quality determination is accomplished by the albedo neutron-to- incident thermal neutron response ratio above the Cadmium cutoff. This front Cadmium shielded-to-back Cadmium shielded response ratio, compensated for the presence of gamma radiation, provides the basis for neutron energy calibration via the albedo response curve

Brand deletion: How the decision-making approach affects deletion success

Directory of Open Access Journals (Sweden)

Víctor Temprano-García

2018-04-01

Full Text Available Literature on brand deletion (BD, a critical and topical decision within a firm's marketing strategy, is extremely scarce. The present research is concerned with the decision-making process and examines the effect on BD success of three different approaches to decision-making – rational, intuitive and political – and of the interaction between the rational and political approaches. The moderating effect of the type of BD – i.e., total brand killing or disposal vs. brand name change – is also analyzed. The model is tested on a sample of 155 cases of BD. Results point to positive effects on BD success of both rationality and intuition, and a negative effect of politics. Findings also indicate that the negative impact of political behavior on BD success is minimized in the absence of evidence and objective information and when the BD is undertaken through a brand name change. JEL classification: L10, M31, Keywords: Brand deletion, Rational decision-making, Intuitive decision-making, Political decision-making, Brand deletion success

The influence of insecticides and vegetation in structuring Formica mound ant communities (Hymenoptera: Formicidae) in Maine lowbush blueberry.

Science.gov (United States)

Choate, Beth; Drummond, Francis A

2013-04-01

Assessing the influence of new, reduced-risk insecticides on natural enemies within agroecosystems is essential to developing integrated pest management strategies. Three species of mound-building Formica ants are abundant throughout Maine lowbush blueberry fields (Formica exsectoides Forel, F. glacialis Wheeler, and F. ulkei Emery). All three species have been described in the literature as predaceous, with research demonstrating that F. exsectoides preys on major pest insects of lowbush blueberry. The objectives of this study were to determine the impact of common-use and newly introduced insecticides on Formica sp. ant communities in lowbush blueberry fields. Laboratory assays indicated that the commonly applied insecticide phosmet is toxic to F. exsectoides, even after 8 d of field weathering (P insecticides, such as acetamiprid, had little effect on survival of all three species. Abundance of each species in the field varied with lowbush blueberry pesticide-use strategy and amount of nonblueberry vegetation. Both F. exsectoides and F. glacialis were most abundant in organic fields; however, overall F. glacialis was the most abundant in fields of all management types. Field surveys support laboratory results suggesting that phosmet is highly toxic to these species and influences their spatial pattern. Manipulation of the crop to conserve natural enemies in lowbush blueberry is difficult because the crop is not planted; therefore, we must look closely at the incorporation of low toxicity insecticides with natural enemies to efficiently control pest insects.

Some analogies between quantum cloning and quantum deleting

International Nuclear Information System (INIS)

Qiu Daowen

2002-01-01

We further verify the impossibility of deleting an arbitrary unknown quantum state, and also show it is impossible to delete two nonorthogonal quantum states as a consequence of unitarity of quantum mechanics. A quantum approximate (deterministic) deleting machine and a probabilistic (exact) deleting machine are constructed. The estimation for the global fidelity characterizing the efficiency of the quantum approximate deleting is given. We then demonstrate that unknown nonorthogonal states chosen from a set with their multiple copies can evolve into a linear superposition of multiple deletions and failure branches by a unitary process if and only if the states are linearly independent. It is notable that the proof for necessity is somewhat different from Pati's [Phys. Rev. Lett. 83, 2849 (1999)]. Another deleting machine for the input states that are unnecessarily linearly independent is also presented. The bounds on the success probabilities of these deleting machines are derived. So we expound some preliminary analogies between quantum cloning and deleting

Use of a wine yeast deletion collection reveals genes that influence fermentation performance under low-nitrogen conditions.

Science.gov (United States)

Peter, Josephine J; Watson, Tommaso L; Walker, Michelle E; Gardner, Jennifer M; Lang, Tom A; Borneman, Anthony; Forgan, Angus; Tran, Tina; Jiranek, Vladimir

2018-05-01

A deficiency of nitrogenous nutrients in grape juice can cause stuck and sluggish alcoholic fermentation, which has long been a problem in winemaking. Nitrogen requirements vary between wine yeast strains, and the ability of yeast to assimilate nitrogen depends on the nature and concentration of nitrogen present in the medium. In this study, a wine yeast gene deletion collection (1844 deletants in the haploid AWRI1631 background) was screened to identify genes whose deletion resulted in a reduction in the time taken to utilise all sugars when grown in a chemically defined grape juice medium supplemented with limited nitrogen (75 mg L-1 as a free amino acid mixture). Through micro-scale and laboratory-scale fermentations, 15 deletants were identified that completed fermentation in a shorter time than the wildtype (c.a. 15%-59% time reduction). This group of genes was annotated to biological processes including protein modification, transport, metabolism and ubiquitination (UBC13, MMS2, UBP7, UBI4, BRO1, TPK2, EAR1, MRP17, MFA2 and MVB12), signalling (MFA2) and amino acid metabolism (AAT2). Deletion of MFA2, encoding mating factor-a, resulted in a 55% decrease in fermentation duration. Mfa2Δ was chosen for further investigation to understand how this gene deletion conferred fermentation efficiency in limited nitrogen conditions.

Discernibility of Burial Mounds in High-Resolution X-Band SAR Images for Archaeological Prospections in the Altai Mountains

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Timo Balz

2016-09-01

Full Text Available The Altai Mountains are a heritage-rich archaeological landscape with monuments in almost every valley. Modern nation state borders dissect the region and limit archaeological landscape analysis to intra-national areas of interest. Remote sensing can help to overcome these limitations. Due to its high precision, Synthetic Aperture Radar (SAR data can be a very useful tool for supporting archaeological prospections, but compared to optical imagery, the detectability of sites of archaeological interest is limited. We analyzed the limitations of SAR using TerraSAR-X images in different modes. Based on ground truth, the discernibility of burial mounds was analyzed in different SAR acquisition modes. We show that very-high-resolution TerraSAR-X staring spotlight images are very well suited for the task, with >75% of the larger mounds being discernible, while in images with a lower spatial resolution only a few large sites can be detected, at rates below 50%.

Computer aided optimum design of rubble-mound breakwater cross-sections : Manual of the RUMBA computer package, release 1

NARCIS (Netherlands)

De Haan, W.

1989-01-01

The computation of the optimum rubble-mound breakwater crosssection is executed on a micro-computer. The RUMBA computer package consists of two main parts: the optimization process is executed by a Turbo Pascal programme, the second part consists of editing functions written in AutoLISP. AutoLISP is

Experimental Study of Wave Field Around the Outer Part of a Rubble Mound Roundhead Solution for the new Port of La Coruña at Punto Langosteira

DEFF Research Database (Denmark)

Burcharth, Hans F.; Pedersen, Thomas Schmidt

The wave agitation in the port and at the entrance to the port depends on the length of the outer part of the breakwater (west of the spur breakwater) and on the type of structure, e.g. caissons or rubble mound. In the present study is investigated the wave field around a rubble mound head armoured...... port basin and berths. The calibrated numerical model can then be used for the study of the optimum length and type of the outer breakwater structure....

Probabilistic cloning and deleting of quantum states

International Nuclear Information System (INIS)

Feng Yuan; Zhang Shengyu; Ying Mingsheng

2002-01-01

We construct a probabilistic cloning and deleting machine which, taking several copies of an input quantum state, can output a linear superposition of multiple cloning and deleting states. Since the machine can perform cloning and deleting in a single unitary evolution, the probabilistic cloning and other cloning machines proposed in the previous literature can be thought of as special cases of our machine. A sufficient and necessary condition for successful cloning and deleting is presented, and it requires that the copies of an arbitrarily presumed number of the input states are linearly independent. This simply generalizes some results for cloning. We also derive an upper bound for the success probability of the cloning and deleting machine

Duff mound consumption and cambium injury for centuries-old western larch from prescribed burning in western Montana

Science.gov (United States)

Michael G. Harrington

2012-01-01

Western larch is one of the most fire-adapted conifers in western North America. Its historical perpetuation depended upon regular fire disturbances, which creates open stand conditions and mineral seedbeds. A stand of 200- to 500-year-old larch in western Montana with deep duff mounds resulting from an unusually long 150-year fire-free period was mechanically thinned...

46 CFR 67.171 - Deletion; requirement and procedure.

Science.gov (United States)

2010-10-01

... 46 Shipping 2 2010-10-01 2010-10-01 false Deletion; requirement and procedure. 67.171 Section 67...; Requirement for Exchange, Replacement, Deletion, Cancellation § 67.171 Deletion; requirement and procedure. (a... provided in § 67.161, and the vessel is subject to deletion from the roll of actively documented vessels...

An electric and electromagnetic geophysical approach for subsurface investigation of anthropogenic mounds in an urban environment

Science.gov (United States)

Pazzi, Veronica; Tapete, Deodato; Cappuccini, Luca; Fanti, Riccardo

2016-11-01

Scientific interest in mounds as geomorphological features that currently represent topographic anomalies in flat urban landscapes mainly lies on the understanding of their origin, either purely natural or anthropogenic. In this second circumstance, another question is whether traces of lost buildings are preserved within the mound subsurface and can be mapped as remnants testifying past settlement. When these landforms have been modified in centuries for civilian use, structural stability is a further element of concern. To address these issues we applied a geophysical approach based on a very low frequency electromagnetic (VLF-EM) technique and two-dimensional electrical resistivity tomography (2D-ERT) and integrated it with well-established surface survey methods within a diagnostic workflow of structural assessment. We demonstrate the practical benefits of this method in the English Cemetery of Florence, Italy, whose mixed nature and history of morphological changes are suggested by archival records. The combination of the two selected geophysical techniques allowed us to overcome the physical obstacles caused by tomb density and to prevent interference from the urban vehicular traffic on the geophysical signals. Eighty-two VLF-EM profiles and five 2D-ERTs were collected to maximise the spatial coverage of the subsurface prospection, while surface indicators of instability (e.g., tomb tilt, location, and direction of ground fractures and wall cracks) were mapped by standard metric survey. High resistive anomalies (> 300 and 400 Ωm) observed in VLF-EM tomographies are attributed to remnants of the ancient perimeter wall that are still buried along the southern side of the mound. While no apparent correlation is found between the causes of tomb and ground movements, the crack pattern map supplements the overall structural assessment. The main outcome is that the northern portion of the retaining wall is classed with the highest hazard rate. The impact of this

On Deletion of Sutra Translation

Institute of Scientific and Technical Information of China (English)

CHEN Shu-juan

2017-01-01

Dao An's the metaphor of translation "wine diluted with water' ' expressed a view about translation that had been abridged.Later Kumarajiva provided metaphor "rice chewed—tasteless and downright disgusting".Both of them felt regretted at the weakening of taste,sometimes even the complete loss of flavor caused by deletion in translation of Buddhist sutras.In early sutra translation,deletion is unavoidable which made many sutra translators felt confused and drove them to study it further and some even managed to give their understanding to this issue.This thesis will discuss the definition,and what causes deletion and the measures adopted by the sutra translators.

Technical note: Rapid image-based field methods improve the quantification of termite mound structures and greenhouse-gas fluxes

Directory of Open Access Journals (Sweden)

P. A. Nauer

2018-06-01

Full Text Available Termite mounds (TMs mediate biogeochemical processes with global relevance, such as turnover of the important greenhouse gas methane (CH4. However, the complex internal and external morphology of TMs impede an accurate quantitative description. Here we present two novel field methods, photogrammetry (PG and cross-sectional image analysis, to quantify TM external and internal mound structure of 29 TMs of three termite species. Photogrammetry was used to measure epigeal volume (VE, surface area (AE and mound basal area (AB by reconstructing 3-D models from digital photographs, and compared against a water-displacement method and the conventional approach of approximating TMs by simple geometric shapes. To describe TM internal structure, we introduce TM macro- and micro-porosity (θM and θμ, the volume fractions of macroscopic chambers, and microscopic pores in the wall material, respectively. Macro-porosity was estimated using image analysis of single TM cross sections, and compared against full X-ray computer tomography (CT scans of 17 TMs. For these TMs we present complete pore fractions to assess species-specific differences in internal structure. The PG method yielded VE nearly identical to a water-displacement method, while approximation of TMs by simple geometric shapes led to errors of 4–200 %. Likewise, using PG substantially improved the accuracy of CH4 emission estimates by 10–50 %. Comprehensive CT scanning revealed that investigated TMs have species-specific ranges of θM and θμ, but similar total porosity. Image analysis of single TM cross sections produced good estimates of θM for species with thick walls and evenly distributed chambers. The new image-based methods allow rapid and accurate quantitative characterisation of TMs to answer ecological, physiological and biogeochemical questions. The PG method should be applied when measuring greenhouse-gas emissions from TMs to avoid large errors from inadequate shape

Photogrammetric analysis of rubble mound breakwaters scale model tests

Directory of Open Access Journals (Sweden)

João Rodrigues

2016-09-01

Full Text Available The main goal of this paper is to develop a photogrammetric method in order to obtain arobust tool for damage assessment and quantification of rubble-mound armour layers during physicalscale model tests. With the present work, an innovative approach based on a reduced number ofdigital photos is proposed to support the identification of affected areas. This work considers twosimple digital photographs recording the instants before and after the completion of the physicaltest. Mathematical techniques were considered in the development of the procedures, enabling thetracking of image differences between photos. The procedures were developed using an open-sourceapplication, Scilab, nevertheless they are not platform dependent. The procedures developed enablethe location and identity of eroded areas in the breakwater armour layer, as well as the possibilityof quantifying them. This ability is confirmed through the calculation of correlation coefficients ineach step of the search for the more damaged area. It is also possible to make an assessment of themovement of armour layer units.

Mesopotamian ceramics from the burial mounds of Bahrain, c.2250–1750 BC

DEFF Research Database (Denmark)

Laursen, Steffen

2011-01-01

in Mesopotamia’s interaction with the populations of the ‘Lower Sea’. The first import horizon is comprised of a vessel type found exclusively in the scattered mounds of Early Type which pre-date the rise of the Dilmun ‘state’ proper. The distribution of these vessels outside their areas of production...... demonstrates how they circulated widely in a network elsewhere considered to reflect the orbit of Mesopotamia’s late third-millennium ‘Magan trade’. Here it is consequently concluded that this particular type represents an important fossile directeur of the ‘Magan trade’ and pre-Dilmun florescence. The vessels...

Performance evaluation of termite-mound clay, concrete and steel silos for the storage of maize grains in the humid tropics

Science.gov (United States)

Inadequate storage facilities have contributed to severe maize postharvest losses in many developing countries. This study determined the potential of termite mound clay (TMC), a readily-available material in Nigeria, as a construction material for storage silos. The performance of the TMC silo was ...

Expanding the clinical spectrum of chromosome 15q26 terminal deletions associated with IGF-1 resistance.

Science.gov (United States)

O'Riordan, Aisling M; McGrath, Niamh; Sharif, Farhana; Murphy, Nuala P; Franklin, Orla; Lynch, Sally Ann; O'Grady, Michael J

2017-01-01

Haploinsufficiency of the insulin-like growth factor-1 receptor (IGF1R) gene on chromosome 15q26.3 is associated with impaired prenatal and postnatal growth, developmental delay, dysmorphic features and skeletal abnormalities. Terminal deletions of chromosome 15q26 arising more proximally may also be associated with congenital heart disease, epilepsy, diaphragmatic hernia and renal anomalies. We report three additional cases of 15q26 terminal deletions with novel features which may further expand the spectrum of this rarely reported contiguous gene syndrome. Phenotypic features including neonatal lymphedema, aplasia cutis congenita and aortic root dilatation have not been reported previously. Similarly, laboratory features of insulin-like growth factor 1 (IGF-1) resistance are described, including markedly elevated IGF-1 of up to +4.7 SDS. In one patient, the elevated IGF-1 declined over time and this coincided with a period of spontaneous growth acceleration. Deletions of 15q26 are a potential risk factor for aortic root dilatation, neonatal lymphedema and aplasia cutis in addition to causing growth restriction. What is Known: • Terminal deletions of chromosome 15q26 are associated with impaired prenatal and postnatal growth, developmental delay, dysmorphic features and skeletal abnormalities. What is New: • Neonatal lymphedema, aplasia cutis congenita and aortic root dilatation have not been previously described in 15q26 terminal deletions and may represent novel features. • IGF-1 levels may be increased up to 4.7 SDS.

Evaluation of brine disposal from the Bryan Mound site of the strategic petroleum reserve program. Final report

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Case, Robert J.; Chittenden, Jr, Mark E.; Harper, Jr, Donald E.; Kelly, Jr, Francis J.; Loeblich, Laurel A.; McKinney, Larry D.; Minello, Thomas J.; Park, E. Taisoo; Randall, Robert E.; Slowey, J. Frank

1981-01-01

On March 10, 1980, the Department of Energy's Strategic Petroleum Reserve Program began leaching the Bryan Mound salt dome and discharging the resulting brine into the coastal waters off Freeport, Texas. During the months of March and April, a team of scientists and engineers from Texas A and M University conducted an intensive environmental study of the area surrounding the diffuser site. A pipeline has been laid from the Bryan Mound site to a location 12.5 statute miles (20 km) offshore. The last 3060 ft (933 m) of this pipeline is a 52-port diffuser through which brine can be discharged at a maximum rate of 680,000 barrels per day. Initially, 16 ports were open which permitted a maximum discharge rate of 350,000 barrels per day and a continuous brine discharge was achieved on March 13, 1980. The purpose of this report is to describe the findings of the project team during the intensive postdisposal study period of March and April, 1980. The major areas of investigation are physical oceanography, analysis of the discharge plume, water and sediment quality, nekton, benthos, phytoplankton, zooplankton, and data management.

A strong deletion bias in nonallelic gene conversion.

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Raquel Assis

Full Text Available Gene conversion is the unidirectional transfer of genetic information between orthologous (allelic or paralogous (nonallelic genomic segments. Though a number of studies have examined nucleotide replacements, little is known about length difference mutations produced by gene conversion. Here, we investigate insertions and deletions produced by nonallelic gene conversion in 338 Drosophila and 10,149 primate paralogs. Using a direct phylogenetic approach, we identify 179 insertions and 614 deletions in Drosophila paralogs, and 132 insertions and 455 deletions in primate paralogs. Thus, nonallelic gene conversion is strongly deletion-biased in both lineages, with almost 3.5 times as many conversion-induced deletions as insertions. In primates, the deletion bias is considerably stronger for long indels and, in both lineages, the per-site rate of gene conversion is orders of magnitudes higher than that of ordinary mutation. Due to this high rate, deletion-biased nonallelic gene conversion plays a key role in genome size evolution, leading to the cooperative shrinkage and eventual disappearance of selectively neutral paralogs.

Characterization of five partial deletions of the factor VIII gene

International Nuclear Information System (INIS)

Youssoufian, H.; Antonarakis, S.E.; Aronis, S.; Tsiftis, G.; Phillips, D.G.; Kazazian, H.H. Jr.

1987-01-01

Hemophilia A is an X-linked disorder of coagulation caused by a deficiency of factor VIII. By using cloned DNA probes, the authors have characterized the following five different partial deletions of the factor VIII gene from a panel of 83 patients with hemophilia A: (i) a 7-kilobase (kb) deletion that eliminates exon 6; (ii) a 2.5-kb deletion that eliminates 5' sequences of exon 14; (iii) a deletion of at least 7 kb that eliminates exons 24 and 25; (iv) a deletion of at least 16 kb that eliminates exons 23-25; and (v) a 5.5-kb deletion that eliminates exon 22. The first four deletions are associated with severe hemophilia A. By contrast, the last deletion is associated with moderate disease, possibly because of in-frame splicing from adjacent exons. None of those patients with partial gene deletions had circulating inhibitors to factor VIII. One deletion occurred de novo in a germ cell of the maternal grandmother, while a second deletion occurred in a germ cell of the maternal grandfather. These observations demonstrate that de novo deletions of X-linked genes can occur in either male or female gametes

Including the influence of waves in the overall slope stability analysis of rubble mound breakwaters

OpenAIRE

Mollaert, J.; Tavallali, A.

2016-01-01

An offshore breakwater is designed for the construction of a LNG-terminal. For the slope stability analysis of the rubble mound breakwater the existing and the extreme wave climate are considered. Pore water pressure variations exist in the breakwater and its permeable foundation. A wave trough combined with the moment of maximum wave run-up results in a decrease and increase of the pore water pressure, respectively. Therefore, the wave actions have on overall effect on the slope stability of...

Adenovirus mediated homozygous endometrial epithelial Pten deletion results in aggressive endometrial carcinoma

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Joshi, Ayesha; Ellenson, Lora Hedrick, E-mail: lora.ellenson@med.cornell.edu

2011-07-01

Pten is the most frequently mutated gene in uterine endometriod carcinoma (UEC) and its precursor complex atypical hyperplasia (CAH). Because the mutation frequency is similar in CAH and UEC, Pten mutations are thought to occur relatively early in endometrial tumorigenesis. Previous work from our laboratory using the Pten{sup +/-} mouse model has demonstrated somatic inactivation of the wild type allele of Pten in both CAH and UEC. In the present study, we injected adenoviruses expressing Cre into the uterine lumen of adult Pten floxed mice in an attempt to somatically delete both alleles of Pten specifically in the endometrium. Our results demonstrate that biallelic inactivation of Pten results in an increased incidence of carcinoma as compared to the Pten{sup +/-} mouse model. In addition, the carcinomas were more aggressive with extension beyond the uterus into adjacent tissues and were associated with decreased expression of nuclear ER{alpha} as compared to associated CAH. Primary cultures of epithelial and stromal cells were prepared from uteri of Pten floxed mice and Pten was deleted in vitro using Cre expressing adenovirus. Pten deletion was evident in both the epithelial and stromal cells and the treatment of the primary cultures with estrogen had different effects on Akt activation as well as Cyclin D3 expression in the two purified components. This study demonstrates that somatic biallelic inactivation of Pten in endometrial epithelium in vivo results in an increased incidence and aggressiveness of endometrial carcinoma compared to mice carrying a germline deletion of one allele and provides an important in vivo and in vitro model system for understanding the genetic underpinnings of endometrial carcinoma.

Adenovirus mediated homozygous endometrial epithelial Pten deletion results in aggressive endometrial carcinoma

International Nuclear Information System (INIS)

Joshi, Ayesha; Ellenson, Lora Hedrick

2011-01-01

Pten is the most frequently mutated gene in uterine endometriod carcinoma (UEC) and its precursor complex atypical hyperplasia (CAH). Because the mutation frequency is similar in CAH and UEC, Pten mutations are thought to occur relatively early in endometrial tumorigenesis. Previous work from our laboratory using the Pten +/- mouse model has demonstrated somatic inactivation of the wild type allele of Pten in both CAH and UEC. In the present study, we injected adenoviruses expressing Cre into the uterine lumen of adult Pten floxed mice in an attempt to somatically delete both alleles of Pten specifically in the endometrium. Our results demonstrate that biallelic inactivation of Pten results in an increased incidence of carcinoma as compared to the Pten +/- mouse model. In addition, the carcinomas were more aggressive with extension beyond the uterus into adjacent tissues and were associated with decreased expression of nuclear ERα as compared to associated CAH. Primary cultures of epithelial and stromal cells were prepared from uteri of Pten floxed mice and Pten was deleted in vitro using Cre expressing adenovirus. Pten deletion was evident in both the epithelial and stromal cells and the treatment of the primary cultures with estrogen had different effects on Akt activation as well as Cyclin D3 expression in the two purified components. This study demonstrates that somatic biallelic inactivation of Pten in endometrial epithelium in vivo results in an increased incidence and aggressiveness of endometrial carcinoma compared to mice carrying a germline deletion of one allele and provides an important in vivo and in vitro model system for understanding the genetic underpinnings of endometrial carcinoma.

76 FR 5142 - Procurement List; Additions and Deletion

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2011-01-28

... and Deletion AGENCY: Committee for Purchase From People Who Are Blind or Severely Disabled. ACTION: Additions to and deletion from the Procurement List. SUMMARY: This action adds services to the Procurement.... Contracting Activity: Department of Transportation, Federal Aviation Administration, Jamaica, NY. Deletion On...

Fluxes of CH4 and CO2 from soil and termite mounds in south Sudanian savanna of Burkina Faso (West Africa)

Science.gov (United States)

Brümmer, Christian; Papen, Hans; Wassmann, Reiner; Brüggemann, Nicolas

2009-03-01

The contribution of West African savanna ecosystems to global greenhouse gas budgets is highly uncertain. In this study we quantified soil-atmosphere CH4 and CO2 fluxes in the southwest of Burkina Faso from June to September 2005 and from April to September 2006 at four different agricultural fields planted with sorghum (n = 2), cotton, and peanut and at a natural savanna site with termite (Cubitermes fungifaber) mounds. During the rainy season both CH4 uptake and CH4 emission were observed in the savanna, which was on average a CH4 source of 2.79 and 2.28 kg CH4-C ha-1 a-1 in 2005 and 2006, respectively. The crop sites were an average CH4 sink of -0.67 and -0.70 kg CH4-C ha-1 a-1 in the 2 years, without significant seasonal variation. Mean annual soil respiration ranged between 3.86 and 5.82 t CO2-C ha-1 a-1 in the savanna and between 2.50 and 4.51 t CO2-C ha-1 a-1 at the crop sites. CH4 emission from termite mounds was 2 orders of magnitude higher than soil CH4 emissions, whereas termite CO2 emissions were of the same order of magnitude as soil CO2 emissions. Termite CH4 and CO2 release in the savanna contributed 8.8% and 0.4% to the total soil CH4 and CO2 emissions, respectively. At the crop sites, where termite mounds had been almost completely removed because of land use change, termite fluxes were insignificant. Mound density-based upscaling of termite CH4 fluxes resulted in a global termite CH4 source of 0.9 Tg a-1, which corresponds to 0.15% of the total global CH4 budget of 582 Tg a-1, hence significantly lower than those obtained previously by biomass-based calculations. This study emphasizes that land use change, which is of high relevance in this region, has particularly affected soil CH4 fluxes in the past and might still do so in the future.

Discovery of Widespread Biogenic Methane Emissions and Authigenic Carbonate Mound-like Structures at the Aquitaine Shelf (Bay of Biscay)

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Dupré, S.; Loubrieu, B.; Scalabrin, C.; Ehrhold, A.; Gautier, E.; Ruffine, L.; Pierre, C.; Battani, A.; Le Bouffant, N.; Berger, L.

2014-12-01

Fishery acoustic surveys conducted in the Bay of Biscay (1998-2012) and dedicated to monitoring and predicting pelagic ecosystem evolution reveal numerous active seeps on the Aquitaine Shelf, east of the shelf break (Dupré et al. 2014). Seafloor and water column acoustic investigation with the use of ship-borne multibeam echosounder in 2013 (Gazcogne1 marine expedition) confirmed the presence of numerous (> 3000) persistent and widespread gas emission sites at water depths ranging from ~140 to 180 m. These fluid emissions are associated at the seafloor with high backscatter subcircular small-scale mounds, on average less than 2 m high and a few meters in diameter. Near-bottom visual observations and samplings were conducted with the ROV (Remotely Operated Vehicle) Victor (Gazcogne2 expedition). The whole mounds cover an area of ~200 km2 of the seabed, and are by-products of gas seepage, i.e. methane-derived authigenic carbonates. The spatial distribution of the seeps and related structures, based on water column acoustic gas flares and high backscatter seabed patches, appears to be relatively broad, with a North-South extension of ~80 km across the Parentis Basin and the Landes High, and a West-East extension along a few kilometers wide on the shelf, up to 8 km. Gas bubbles sampled at in situ conditions are principally composed of biogenic methane, possibly originated from Late Pleistocene deposits. The volume of methane emitted into the water column is abundant i) with an average gas flux varying locally from 0.035 to 0.37 Ln/min and ii) with regard to the time needed for the precipitation of the authigenic carbonates identified both at the seabed and in the upper most sedimentary column. The GAZCOGNE study is co-funded by TOTAL and IFREMER as part of the PAMELA (Passive Margin Exploration Laboratories) scientific project. ReferenceDupré, S., Berger, L., Le Bouffant, N., Scalabrin, C., and Bourillet, J.-F., 2014. Fluid emissions at the Aquitaine Shelf (Bay of

78 FR 29119 - Procurement List; Additions and Deletion

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2013-05-17

... and Deletion AGENCY: Committee for Purchase From People Who Are Blind or Severely Disabled. ACTION: Additions to and Deletion from the Procurement List. SUMMARY: This action adds products and services to the... Activity: Washington Headquarters Services (WHS), Acquisition Directorate, Washington, DC. Deletion On 4/5...

The hill forts and castle mounds in Lithuania: interaction between geodiversity and human-shaped landscape

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Skridlaite, Grazina; Guobyte, Rimante; Satkunas, Jonas

2015-04-01

Lithuania is famous for its abundant, picturesque hill forts and castle mounds of natural origin. In Lithuania as well as in whole Europe the fortified hills were used as the society dwelling place since the beginning of the Late Bronze Age. Their importance increased when Livonian and Teutonic Orders directed a series of military campaigns against Lithuania with the aim of expansion of Christianity in the region at the end of 1st millennium AD, and they were intensively used till the beginning of the 15th c. when most of them were burned down during fights with the Orders or just abandoned due to the changing political and economical situation. What types of the geodiversity were used for fortified dwellings? The choice in a particular area depended on a variety of geomorphology left behind the retreating ice sheets. High spots dominating their surroundings were of prime interest. In E and SE Lithuania, the Baltic Upland hills marking the eastern margin of the last Weichselian glacier hosted numerous fortified settlements from the end of 2nd millennium BC to the Medieval Ages (Narkunai, Velikuskes etc). In W Lithuania, plateau-like hills of the insular Samogitian Upland had been repeatedly fortified from the beginning of 1st millennium AD to the 14th century (Satrija, Medvegalis etc). Chains of hill forts and castle mounds feature the slopes of glaciofluvial valleys of Nemunas, Neris and other rivers where the slopes were dissected by affluent rivulets and ravines and transformed into isolated, well protected hills (Kernave, Punia, Veliuona etc). Peninsulas and headlands formed by the erosion of fluvial and lacustrine deposits were used in the lowlands, e.g. in central and N Lithuania (Paberze, Mezotne etc). How much the landscape was modified for defense purposes? Long-term erosion and overgrowing vegetation damaged the former fortified sites, however some remains and the archeological excavations allowed their reconstruction. The fortified Bronze Age settlements

44 CFR 5.27 - Deletion of identifying details.

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2010-10-01

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19 CFR 142.49 - Deletion of C-4 Code.

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2010-04-01

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Plutonium working group report on environmental, safety and health vulnerabilities associated with the Department's plutonium storage. Volume II, part 7: Mound working group assessment team report

International Nuclear Information System (INIS)

1994-09-01

This is the report of a visit to the Mound site by the Working Group Assessment Team (WGAT) to assess plutonium vulnerabilities. Purposes of the visit were: to review results of the site's self assessment of current practices for handling and storing plutonium; to conduct an independent assessment of these practices; to reconcile differences and assemble a final list of vulnerabilities; to calculate consequences and probability for each vulnerability; and to issue a report to the Working Group. This report, representing completion of the Mound visit, will be compiled along with those from all other sites with plutonium inventories as part of a final report to the Secretary of Energy

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2013-12-13

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Radiological surveillance of members of the public during earthmoving activities in the area of the Ciemat mound

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Alvarez, A.; Yague, L.; Navarro, N.; Gasco, C.; Ortiz, M. T.; Quinones, J.

2013-01-01

In the year 2012 was undertaken excavation and earthwork of the mound. The lands of this area contained remains sterile uranium mining and therefore concentrations of natural radionuclides higher than natural radioactive background activity. In order to assess the radiological impact on the public, was a theoretical evaluation of the dose inhaled that would get a person who remained in the vicinity during the making of the work. (Author)

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78 FR 27369 - Procurement List; Additions and Deletion

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2013-05-10

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A Comparative Study of Quantum and Classical Deletion

International Nuclear Information System (INIS)

Shen Yao; Hao Liang; Long Guilu

2010-01-01

Here in this letter, we study the difference between quantum and classical deletion. We point out that the linear mapping deletion operation used in the impossibility proof for quantum systems applies also to classical system. The general classical deletion operation is a combined operation of measurement and transformation, i.e., first read the state and then transfer the state to the standard blank state. Though both quantum information and classical information can be deleted in an open system, quantum information cannot be recovered while classical information can be recovered. (general)

Conversion of Deletions during Recombination in Pneumococcal Transformation

Science.gov (United States)

Lefevre, J. C.; Mostachfi, P.; Gasc, A. M.; Guillot, E.; Pasta, F.; Sicard, M.

1989-01-01

Genetic analysis of 16 deletions obtained in the amiA locus of pneumococcus is described. When present on donor DNA, all deletions increased drastically the frequency of wild-type recombinants in two-point crosses. This effect was maximal for deletions longer than 200 bases. It was reduced for heterologies shorter than 76 bases and did not exist for very short deletions. In three-point crosses in which the deletion was localized between two point mutations, we demonstrated that this excess of wild-type recombinants was the result of a genetic conversion. This conversion extended over several scores of bases outside the deletion. Conversion takes place during the heteroduplex stage of recombination. Therefore, in pneumococcal transformation, long heterologies participated in this heteroduplex configuration. As this conversion did not require an active DNA polymerase A gene it is proposed that the mechanism of conversion is not a DNA repair synthesis but involves breakage and ligation between DNA molecules. Conversion of deletions did not require the Hex system of correction of mismatched bases. It differs also from localized conversion. It appears that it is a process that evolved to correct errors of replication which lead to long heterologies and which are not eliminated by other systems. PMID:2599365

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2010-07-01

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2010-11-15

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Genetics Home Reference: proximal 18q deletion syndrome

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... characteristic features. Most cases of proximal 18q deletion syndrome are the result of a new (de novo) deletion and are not inherited from a ... J, Fox PT, Stratton RF, Perry B, Hale DE. Recurrent interstitial deletions of proximal 18q: a new syndrome involving expressive speech delay. Am J Med Genet ...

The diagnosis and molecular analysis of a novel 21.9kb deletion (Qinzhou type deletion) causing α+ thalassemia.

Science.gov (United States)

Long, Ju; Yan, Shanhuo; Lao, Kegan; Pang, Wanrong; Ye, Xuehe; Sun, Lei

2014-04-01

α-Thalassemia is a common single-gene genetic disease that can cause Hb Bart's hydrops fetalis and Hb H disease in tropical and subtropical regions. When examining conventional thalassemia genes, an only detected --(SEA) genotype sample needs further analysis. In doing so, we found a novel 21.9kb deletion (Qinzhou type deletion). The deletion position of the novel 21.9kb deletion is from 14373bp to 36299bp of the α-globin gene cluster (NG_000006.1); thus, there exists a 21927bp sequence deletion, into which a 29bp sequence is added. After sequence analysis, a group of Gap-PCR primers were synthesized to diagnose this novel thalassemia genotype. Through pedigree analysis, we deduced that the propositus obtained the novel alleles from her mother. The genotype of this propositus is --(SEA)/-α(21.9) and its phenotype conforms to the characteristics of Hb H disease, establishing that the combination between -α(21.9) genotype and α(0) genotype can lead to Hb H disease. By molecular analysis, we established that this case fits the characteristic of an α(+) thalassemia genotype. © 2013.

An examination of recharge mound decay and fossil gradients in arid regional sedimentary basins

International Nuclear Information System (INIS)

Lloyd, J.W.

1980-01-01

In many of the vast arid sedimentary basins of the world, groundwater gradients exist that appear to be anomalous in the context of the probable modern recharge potential. The possibility that such gradients are in fact remnant fossil conditions representing the decay of ancient recharge mounds is examined. An example of decay condition is represented using a resistor-network analogue model in which the time control is based on 14 C ages. The decay hypothesis is found to be plausible with realistic aquifer characteristics but a non-homogeneous flow is indicated from the 14 C data. (author)

Detection of genomic deletions in rice using oligonucleotide microarrays

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Bordeos Alicia

2009-03-01

Full Text Available Abstract Background The induction of genomic deletions by physical- or chemical- agents is an easy and inexpensive means to generate a genome-saturating collection of mutations. Different mutagens can be selected to ensure a mutant collection with a range of deletion sizes. This would allow identification of mutations in single genes or, alternatively, a deleted group of genes that might collectively govern a trait (e.g., quantitative trait loci, QTL. However, deletion mutants have not been widely used in functional genomics, because the mutated genes are not tagged and therefore, difficult to identify. Here, we present a microarray-based approach to identify deleted genomic regions in rice mutants selected from a large collection generated by gamma ray or fast neutron treatment. Our study focuses not only on the utility of this method for forward genetics, but also its potential as a reverse genetics tool through accumulation of hybridization data for a collection of deletion mutants harboring multiple genetic lesions. Results We demonstrate that hybridization of labeled genomic DNA directly onto the Affymetrix Rice GeneChip® allows rapid localization of deleted regions in rice mutants. Deletions ranged in size from one gene model to ~500 kb and were predicted on all 12 rice chromosomes. The utility of the technique as a tool in forward genetics was demonstrated in combination with an allelic series of mutants to rapidly narrow the genomic region, and eventually identify a candidate gene responsible for a lesion mimic phenotype. Finally, the positions of mutations in 14 mutants were aligned onto the rice pseudomolecules in a user-friendly genome browser to allow for rapid identification of untagged mutations http://irfgc.irri.org/cgi-bin/gbrowse/IR64_deletion_mutants/. Conclusion We demonstrate the utility of oligonucleotide arrays to discover deleted genes in rice. The density and distribution of deletions suggests the feasibility of a

Two novel types of contiguous gene deletion of the AVPR2 and ARHGAP4 genes in unrelated Japanese kindreds with nephrogenic diabetes insipidus.

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Demura, Masashi; Takeda, Yoshiyu; Yoneda, Takashi; Furukawa, Kenji; Usukura, Mikiya; Itoh, Yuji; Mabuchi, Hiroshi

2002-01-01

Study of two families containing individuals with nephrogenic diabetes insipidus (NDI) indicated different types of 21.3 kb and 26.3 kb deletions involving the AVPR2 and ARHGAP4 (RhoGAP C1) genes. In the case of the 21.3 kb deletion, the deletion consensus motif (5'-TGAAGG-3') and polypurine runs, known as the arrest site of polymerase alpha, were detected in the vicinity of the deletion junction. Inverted repeats (7/8 matches), believed to potentiate DNA loop formation, flank the deletion breakpoint. We propose this deletion to be the result of slipped mispairing during DNA replication. In the case of the 26.3 kb deletion, the 12,945 bp inverted region with the 10,003 bp internal deletion was accompanied with the 2,509 bp deletion in the 5'-side and the 13,785 bp deletion in the 3'-side. We defined three deletion junctions in this rearrangement (DJ1, DJ2, and DJ3) from the 5'-side. The surrounding sequence of DJ1 (5'-CCC-3') closely resembled that of DJ3 (5'-AGGG-3') (DJ1; 5'-cCCCgaggg-3', DJ3; 5'-ccccAGGG-3'), and DJ1 was located in the 5'-side of DJ3 without any overlapping in sequence. The immunoglobulin class switch (ICS) motif (5'-TGGGG-3') was found around the complementary sequence of DJ3. There was a 10-base palindrome (5'-aGACAtgtct-3') in the alignment of the DJ2 (5'-GACA-3') region. From these findings, we propose a novel mutation process with the rearrangement probably resulting from stem-loop induced non-homologous recombination in an ICS-like fashion. Both patients, despite lacking ARHGAP4, had no morphological, clinical, or laboratory abnormalities except for those usually found in patients with NDI. Copyright 2001 Wiley-Liss, Inc.

Stable isotope and 14C study of biogenic calcrete in a termite mound, Western Cape, South Africa, and its palaeoenvironmental significance

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Potts, Alastair J.; Midgley, Jeremy J.; Harris, Chris

2009-09-01

Late Quaternary terrestrial climate records from the semi-arid zone of the Western Cape of South Africa are rare. However, palaeoenvironmental information may be inferred from ancient termite mounds of the region. Calcrete lenses in these mounds have δ 13C and δ 18O values that show systematic changes with radiocarbon dates, which range from 33,629-36,709 to 21,676-23,256 cal yr BP. These dates confirm that these heuweltjies had been present in the landscape since the last glacial period. The decrease in δ 13C and δ 18O from 33,629-36,709 to 21,676-23,256 cal yr BP indicates that climate information is recorded by the calcretes. It is suggested that a progressive decline in air temperature and an increase in moisture availability, and a decline in abundance of C 4 or CAM plants, occurred in the region during the time heuweltjie calcite precipitated.

29 CFR 1610.20 - Deletion of exempted matters.

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2010-07-01

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Rubble-mound breakwater armour units displacement analysis by means of digital images processing methods in scale models

OpenAIRE

Courela, J.M.; Carvalho, R.; Lemos, R.; Fortes, C. J. E. M.; Leandro, J.

2015-01-01

Rubble-mound structures are commonly used for coastal and port protection and needs a properly design as well as inspection and maintenance during its lifetime. The design of such breakwaters usually requires a physical scale model to be tested under different irregular incident wave and tide conditions in order to evaluate its hydraulic and structural behaviour, namely the stability of the proposed design. Armour units displacement and fall analysis in physical models are then a ...

Pathological mechanisms underlying single large‐scale mitochondrial DNA deletions

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Rocha, Mariana C.; Rosa, Hannah S.; Grady, John P.; Blakely, Emma L.; He, Langping; Romain, Nadine; Haller, Ronald G.; Newman, Jane; McFarland, Robert; Ng, Yi Shiau; Gorman, Grainne S.; Schaefer, Andrew M.; Tuppen, Helen A.; Taylor, Robert W.

2018-01-01

Objective Single, large‐scale deletions in mitochondrial DNA (mtDNA) are a common cause of mitochondrial disease. This study aimed to investigate the relationship between the genetic defect and molecular phenotype to improve understanding of pathogenic mechanisms associated with single, large‐scale mtDNA deletions in skeletal muscle. Methods We investigated 23 muscle biopsies taken from adult patients (6 males/17 females with a mean age of 43 years) with characterized single, large‐scale mtDNA deletions. Mitochondrial respiratory chain deficiency in skeletal muscle biopsies was quantified by immunoreactivity levels for complex I and complex IV proteins. Single muscle fibers with varying degrees of deficiency were selected from 6 patient biopsies for determination of mtDNA deletion level and copy number by quantitative polymerase chain reaction. Results We have defined 3 “classes” of single, large‐scale deletion with distinct patterns of mitochondrial deficiency, determined by the size and location of the deletion. Single fiber analyses showed that fibers with greater respiratory chain deficiency harbored higher levels of mtDNA deletion with an increase in total mtDNA copy number. For the first time, we have demonstrated that threshold levels for complex I and complex IV deficiency differ based on deletion class. Interpretation Combining genetic and immunofluorescent assays, we conclude that thresholds for complex I and complex IV deficiency are modulated by the deletion of complex‐specific protein‐encoding genes. Furthermore, removal of mt‐tRNA genes impacts specific complexes only at high deletion levels, when complex‐specific protein‐encoding genes remain. These novel findings provide valuable insight into the pathogenic mechanisms associated with these mutations. Ann Neurol 2018;83:115–130 PMID:29283441

Diagenesis of silica-rich mounded chalk, the Coniacian Arnager Limestone, Denmark

DEFF Research Database (Denmark)

Buus Madsen, Heine; Stemmerik, Lars; Surlyk, Finn

2010-01-01

The Coniacian Arnager Limestone Formation is exposed on the Danish island of Bornholm in the Baltic Sea. It is composed of mound-bedded siliceous chalk, and X-ray diffraction and scanning electron microscopy indicate a content of 30-70% insoluble minerals, including authigenic opal-CT, quartz......, clinoptilolite, feldspars, calcite, dolomite, and barite. Opal-CT and clinoptilolite are the most common and constitute 16-53% and 2-9%, respectively. The content of insoluble minerals varies laterally bothwithinthemounds and inplanar beds, and the opal-CT content varies by up to 10% vertically. Themounds...... precipitation of opal-CT. The opal-CT formed at temperatures around 17°C, the precipitation lowered the silica activity and the Si/Al ratio of the pore water, resulting in precipitation of clinoptilolite, feldspar and smectite. Calcite formed synchronouslywith the latest clinoptilolite.Minoramounts of quartz...

Probabilistic deletion of copies of linearly independent quantum states

International Nuclear Information System (INIS)

Feng Jian; Gao Yunfeng; Wang Jisuo; Zhan Mingsheng

2002-01-01

We show that each of two copies of the nonorthogonal states randomly selected from a certain set S can be probabilistically deleted by a general unitary-reduction operation if and only if the states are linearly independent. We derive a tight bound on the best possible deleting efficiencies. These results for 2→1 probabilistic deleting are also generalized into the case of N→M deleting (N,M positive integers and N>M)

ATLAS DQ2 Deletion Service

International Nuclear Information System (INIS)

Oleynik, Danila; Petrosyan, Artem; Garonne, Vincent; Campana, Simone

2012-01-01

The ATLAS Distributed Data Management project DQ2 is responsible for the replication, access and bookkeeping of ATLAS data across more than 100 distributed grid sites. It also enforces data management policies decided on by the collaboration and defined in the ATLAS computing model. The DQ2 Deletion Service is one of the most important DDM services. This distributed service interacts with 3rd party grid middleware and the DQ2 catalogues to serve data deletion requests on the grid. Furthermore, it also takes care of retry strategies, check-pointing transactions, load management and fault tolerance. In this paper special attention is paid to the technical details which are used to achieve the high performance of service, accomplished without overloading either site storage, catalogues or other DQ2 components. Special attention is also paid to the deletion monitoring service that allows operators a detailed view of the working system.

Growth of gas hydrate mounds and gas chimneys of the eastern margin of Japan Sea as revealed by MBES, SSS and SBP of AUV

Science.gov (United States)

Matsumoto, R.; Satoh, M.; Hiromatsu, M.; Tomaru, H.; Machiyama, H.

2010-12-01

A series of PC, ROV and SCS surveys to study the origin and evolution of gas hydrate systems along the eastern margin of Japan Sea have identified a number of shallow GH accumulations on the mounds, 300m to 500m in diameter and 30m to 40m high, on the Umitaka spur and Joetsu knoll in Joetsu basin with the WD of 880m to 1200m (Matsumoto et al., 2005; 2009). All of the hydrate mounds develop on gas chimneys as recognized by seismic profiles, and some are associated with gigantic methane plumes, 600m to 700m high. Multi Beam Echo Sounder (MBES), Side Scan Sonar (SSS) and Sub-Bottom Profiler (SBP) of AUV Urashima have revealed ultra-high resolution topographic features and subsurface structures of the mounds and adjacent areas during the JAMSTEC YK10-08 cruise, July 2010. AUV Urashima ran over the spur and knoll at 50m to 80m above seafloor at a cruising speed of 2.4 knots. MBES and SSS mosaics demonstrate two types of mounds. One is a low swell with smooth surface and weak reflectance, while the other is characterized by rough and uneven topographic features with strong SSS images due to incrustation by methane-induced carbonate concretions and gas hydrates. SBP provides clear stratigraphic and structural relations down to 50mbsf to 80mbsf and recognizes three stratigraphic units as I: upper massive unit (5-10m thick), II: middle evenly bedded unit (15-25m thick) and III: lower slightly bedded unit (> 15-25m thick). Gas chimneys grow up toward the seafloor through Units III, II, and I. When the ceiling of gas chimney stays within Unit III or II, the mound above the chimney is either low swell or nearly flat, while the swell grows up higher when the ceiling reaches to Unit I or the seafloor. Eventually, the ceiling breaks through the seafloor and protrudes to form GH mound up to 40m to 50m high, and then start to decay probably due to mechanical collapse and chemical dissolution of gas hydrates. The ceiling of gas chimneys is often represented by high amplitude, uneven

Reliability Evaluation of a Concrete Crown Wall on a Rubble Mound Breakwater considering Sliding Failure, Overturning and Rupture Failure of the Foundation

DEFF Research Database (Denmark)

Christiani, E.; Sørensen, Jørgen S.; Burcharth, Hans F.

1994-01-01

and rupture failure in the rubble mound are taken into account. The method of probabilistic foundation stability analysis is presented by the example of a translation slip failure involving kinematically correct slip surfaces and failure zones in friction based soil. A conventional static quasi-static...

Maize Storage in Termite Mound Clay, Concrete, and Steel Silos in the Humid Tropics: Comparison and Effect on Bacterial and Fungal Counts

Science.gov (United States)

This study investigated the functional suitability of using the readily-available termite mound clay (TMC) for grain silo construction in comparison to conventional reinforced concrete (RC) and galvanized steel (GS) silos for maize storage in the humid tropics. The extent to which temperature and r...

P450XXI (steroid 21-hydroxylase) gene deletions are not found in family studies of congenital adrenal hyperplasia

International Nuclear Information System (INIS)

Matteson, K.J.; Phillips, J.A. III; Miller, W.L.; Chung, B.C.; Orlando, P.J.; Frisch, H.; Ferrandez, A.; Burr, I.M.

1987-01-01

Congenital adrenal hyperplasia (CAH) is a common genetic disorder due to defective 21-hydroxylation of steroid hormones. The human P450XXIA2 gene encodes cytochrome P450c21 [steroid 21-monooxygenase (steroid 21-hydroxylase)], which mediates 21-hydroxylation. The P450XXIA2 gene may be distinguished from the duplicated P450XXIA1 pseudogene by cleavage with the restriction endonuclease Taq I, with the XXIA2 gene characterized by a 3.7-kilobase (kb) fragment and the XXIA1 pseudogene characterized by a 3.2-kb fragment. Restriction endonuclease mapping by several laboratories has suggested that deletion of the P450XXIA2 gene occurs in about 25% of patients with CAH, as their genomic DNA lacks detectable 3.7-kb Taq I fragments. The authors have cloned human P450c21 cDNA and used it to study genomic DNA prepared from 51 persons in 10 families, each of which includes 2 or more persons with CAH. After Taq I digestion, apparent deletions are seen in 7 of the 20 alleles of the probands; using EcoRI, apparent deletions are seen in 9 of the 20 alleles. However, the apparently deleted alleles seen with Taq I do not coincide with those seen with EcoRI. Furthermore, studies with Bgl II, EcoRI, Kpn I, and Xba I yield normal patterns with at least two enzymes in all cases. Since all probands yielded normal patterns with at least two of the five enzymes used, they conclude that the P450XXIA2 gene deletions widely reported in CAH patients probably represent gene conversions, unequal crossovers,or polymorphisms rather than simple gene deletions

Chromosomal deletion unmasking a recessive disease: 22q13 deletion syndrome and metachromatic leukodystrophy

DEFF Research Database (Denmark)

Bisgaard, A-M; Kirchhoff, M; Nielsen, J E

2008-01-01

A deletion on one chromosome and a mutant allele on the other may cause an autosomal recessive disease. We report on two patients with mental retardation, dysmorphic features and low catalytic activity of arylsulfatase A. One patient had a pathogenic mutation in the arylsulfatase A gene (ARSA......) and succumbed to metachromatic leukodystrophy (MLD). The other patient had a pseudoallele, which does not lead to MLD. The presenting clinical features and low arylsulfatase A activity were explained, in each patients, by a deletion of 22q13 and, thereby, of one allele of ARSA....

75 FR 56995 - Procurement List Proposed Additions and Deletion

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2010-09-17

... Additions and Deletion AGENCY: Committee for Purchase From People Who Are Blind or Severely Disabled. ACTION: Proposed Additions to and Deletion From the Procurement List. SUMMARY: The Committee is proposing to add... aggregated by the Defense Logistics Agency Troop Support, Philadelphia, PA. Deletion Regulatory Flexibility...

76 FR 60810 - Procurement List; Proposed Additions and Deletion

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2011-09-30

... Additions and Deletion AGENCY: Committee for Purchase From People Who Are Blind or Severely Disabled. ACTION: Proposed Additions to and Deletion from the Procurement List. SUMMARY: The Committee is proposing to add... Activity: Department of Energy, Idaho Operations Office, Idaho Falls, ID. DELETION Regulatory Flexibility...

Are there ethnic differences in deletions in the dystrophin gene?

Energy Technology Data Exchange (ETDEWEB)

Banerjee, M.; Verma, I.C. [All India Inst. of Medical Sciences, New Delhi (India)

1997-01-20

We studied 160 cases of Duchenne muscular dystrophy (DMD) drawn from all parts of India, using multiplex PCR of 27 exons. Of these, 103 (64.4%) showed intragenic deletions. Most (69.7%) of the deletions involved exons 45-51. The phenotype of cases with deletion of single exons did not differ significantly from those with deletion of multiple exons. The distribution of deletions in studies from different countries was variable, but this was accounted for either by the small number of cases studied, or by fewer exons analyzed. It is concluded that there is likely to be no ethnic difference with respect to deletions in the DMD gene. 38 refs., 2 figs., 3 tabs.

A Preliminary Study on Termite Mound Soil as Agricultural Soil for Crop Production in South West, Nigeria

OpenAIRE

Omofunmi, O. E.; Kolo, J. G.; Alli, A. A.; Ojo, A. S.

2017-01-01

It is a popular belief of the people in the Southern region of Nigeria that a land infested with termite usually brings prosperity to the land owner regardless of the type of its usage.  Therefore, the present study assessed termite mounds soil properties which are important to crop production. Two soil samples were collected and their physical and chemical properties determined in accordance with American Public Health Association (APHA, 2005). Data were analyzed using descriptive stati...

Comprehensive analysis of pathogenic deletion variants in Fanconi anemia genes.

Science.gov (United States)

Flynn, Elizabeth K; Kamat, Aparna; Lach, Francis P; Donovan, Frank X; Kimble, Danielle C; Narisu, Narisu; Sanborn, Erica; Boulad, Farid; Davies, Stella M; Gillio, Alfred P; Harris, Richard E; MacMillan, Margaret L; Wagner, John E; Smogorzewska, Agata; Auerbach, Arleen D; Ostrander, Elaine A; Chandrasekharappa, Settara C

2014-11-01

Fanconi anemia (FA) is a rare recessive disease resulting from mutations in one of at least 16 different genes. Mutation types and phenotypic manifestations of FA are highly heterogeneous and influence the clinical management of the disease. We analyzed 202 FA families for large deletions, using high-resolution comparative genome hybridization arrays, single-nucleotide polymorphism arrays, and DNA sequencing. We found pathogenic deletions in 88 FANCA, seven FANCC, two FANCD2, and one FANCB families. We find 35% of FA families carry large deletions, accounting for 18% of all FA pathogenic variants. Cloning and sequencing across the deletion breakpoints revealed that 52 FANCA deletion ends, and one FANCC deletion end extended beyond the gene boundaries, potentially affecting neighboring genes with phenotypic consequences. Seventy-five percent of the FANCA deletions are Alu-Alu mediated, predominantly by AluY elements, and appear to be caused by nonallelic homologous recombination. Individual Alu hotspots were identified. Defining the haplotypes of four FANCA deletions shared by multiple families revealed that three share a common ancestry. Knowing the exact molecular changes that lead to the disease may be critical for a better understanding of the FA phenotype, and to gain insight into the mechanisms driving these pathogenic deletion variants. © 2014 WILEY PERIODICALS, INC.

The significance of chromosome deletions in atomic-bomb survivors

International Nuclear Information System (INIS)

Tanaka, Kimio; Shigeta, Chiharu; Oguma, Nobuo; Kamada, Nanao; Deng, Z.; Niimi, Masanobu; Aisaka, Tadaichi.

1986-01-01

In 39 A-bomb survivors 40 years after exposure at ≤ 1,000 m from ground zero, the frequency and features of chromosome deletions in peripheral lymphocytes were examined using a differential staining technique. Simultaneously, in vitro irradiation experiment with Cf-252 was made to infer chromosome aberrations occuring immediately after exposure. Californium-252 with 100 rad induced dicentric and ring chromosomes in 40 % of the cells and acentric fragments in 44 %. Among the A-bomb survivors, chromosome aberrations were observed in 651 (21 %) of the total 3,136 cells. There were 146 cells with deletions (22 % of abnormal cells; 5 % of the total cells), and 10 cells with acentric fragment (0.3 % of the total cells). The figure for deletions was far higher than that reported in the literature. A large number of deletions were seen in chromosomes no.4, no.21, and no.22, and a few deletions in chromosomes no.7 and no.20. Significance of chromosome deletions is discussed. (Namekawa, K.)

MULTICOMPONENT SEISMIC ANALYSIS AND CALIBRATION TO IMPROVE RECOVERY FROM ALGAL MOUNDS: APPLICATION TO THE ROADRUNNER/TOWAOC AREA OF THE PARADOX BASIN, UTE MOUNTAIN UTE RESERVATION, COLORADO

International Nuclear Information System (INIS)

Paul La Pointe; Claudia Rebne; Steve Dobbs

2003-01-01

This report describes the results made in fulfillment of contract DE-FG26-02NT15451, ''Multicomponent Seismic Analysis and Calibration to Improve Recovery from Algal Mounds: Application to the Roadrunner/Towaoc Area of the Paradox Basin, Ute Mountain Ute Reservation, Colorado''. Optimizing development of highly heterogeneous reservoirs where porosity and permeability vary in unpredictable ways due to facies variations can be challenging. An important example of this is in the algal mounds of the Lower and Upper Ismay reservoirs of the Paradox Basin in Utah and Colorado. It is nearly impossible to develop a forward predictive model to delineate regions of better reservoir development, and so enhanced recovery processes must be selected and designed based upon data that can quantitatively or qualitatively distinguish regions of good or bad reservoir permeability and porosity between existing well control. Recent advances in seismic acquisition and processing offer new ways to see smaller features with more confidence, and to characterize the internal structure of reservoirs such as algal mounds. However, these methods have not been tested. This project will acquire cutting edge, three-dimensional, nine-component (3D9C) seismic data and utilize recently-developed processing algorithms, including the mapping of azimuthal velocity changes in amplitude variation with offset, to extract attributes that relate to variations in reservoir permeability and porosity. In order to apply advanced seismic methods a detailed reservoir study is needed to calibrate the seismic data to reservoir permeability, porosity and lithofacies. This will be done by developing a petrological and geological characterization of the mounds from well data; acquiring and processing the 3D9C data; and comparing the two using advanced pattern recognition tools such as neural nets. In addition, should the correlation prove successful, the resulting data will be evaluated from the perspective of

75 FR 7450 - Procurement List: Proposed Addition and Deletion

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2010-02-19

... Addition and Deletion AGENCY: Committee for Purchase From People Who Are Blind or Severely Disabled. ACTION: Proposed addition to and deletion from Procurement List. SUMMARY: The Committee is proposing to add to the... W6BA ACA, FT CARSON, COLORADO. Deletion Regulatory Flexibility Act Certification I certify that the...

77 FR 20795 - Procurement List Proposed Addition and Deletion

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2012-04-06

... Addition and Deletion AGENCY: Committee for Purchase From People Who Are Blind or Severely Disabled. ACTION: Proposed Addition to and Deletion from the Procurement List. SUMMARY: The Committee is proposing to add a.... Deletion Regulatory Flexibility Act Certification I certify that the following action will not have a...

9q22 Deletion - First Familial Case

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Yamamoto Toshiyuki

2011-06-01

Full Text Available Abstract Background Only 29 cases of constitutional 9q22 deletions have been published and all have been sporadic. Most associate with Gorlin syndrome or nevoid basal cell carcinoma syndrome (NBCCS, MIM #109400 due to haploinsufficiency of the PTCH1 gene (MIM *601309. Methods and Results We report two mentally retarded female siblings and their cognitively normal father, all carrying a similar 5.3 Mb microdeletion at 9q22.2q22.32, detected by array CGH (244 K. The deletion does not involve the PTCH1 gene, but instead 30 other gene,s including the ROR2 gene (MIM *602337 which causing both brachydactyly type 1 (MIM #113000 and Robinow syndrome (MIM #268310, and the immunologically active SYK gene (MIM *600085. The deletion in the father was de novo and FISH analysis of blood lymphocytes did not suggest mosaicism. All three patients share similar mild dysmorphic features with downslanting palpebral fissures, narrow, high bridged nose with small nares, long, deeply grooved philtrum, ears with broad helix and uplifted lobuli, and small toenails. All have significant dysarthria and suffer from continuous middle ear and upper respiratory infections. The father also has a funnel chest and unilateral hypoplastic kidney but the daughters have no malformations. Conclusions This is the first report of a familial constitutional 9q22 deletion and the first deletion studied by array-CGH which does not involve the PTCH1 gene. The phenotype and penetrance are variable and the deletion found in the cognitively normal normal father poses a challenge in genetic counseling.

Mitochondrial DNA deletion mutations in adult mouse cardiac side population cells

International Nuclear Information System (INIS)

Lushaj, Entela B.; Lozonschi, Lucian; Barnes, Maria; Anstadt, Emily; Kohmoto, Takushi

2012-01-01

We investigated the presence and potential role of mitochondrial DNA (mtDNA) deletion mutations in adult cardiac stem cells. Cardiac side population (SP) cells were isolated from 12-week-old mice. Standard polymerase chain reaction (PCR) was used to screen for the presence of mtDNA deletion mutations in (a) freshly isolated SP cells and (b) SP cells cultured to passage 10. When present, the abundance of mtDNA deletion mutation was analyzed in single cell colonies. The effect of different levels of deletion mutations on SP cell growth and differentiation was determined. MtDNA deletion mutations were found in both freshly isolated and cultured cells from 12-week-old mice. While there was no significant difference in the number of single cell colonies with mtDNA deletion mutations from any of the groups mentioned above, the abundance of mtDNA deletion mutations was significantly higher in the cultured cells, as determined by quantitative PCR. Within a single clonal cell population, the detectable mtDNA deletion mutations were the same in all cells and unique when compared to deletions of other colonies. We also found that cells harboring high levels of mtDNA deletion mutations (i.e. where deleted mtDNA comprised more than 60% of total mtDNA) had slower proliferation rates and decreased differentiation capacities. Screening cultured adult stem cells for mtDNA deletion mutations as a routine assessment will benefit the biomedical application of adult stem cells.

Alternative methods for disposal of low-level radioactive wastes. Task 2c: technical requirements for earth mounded concrete bunker disposal of low-level radioactive waste. Volume 4

International Nuclear Information System (INIS)

Miller, W.O.; Bennett, R.D.

1985-10-01

The study reported herein contains the results of Task 2c (Technical Requirements for Earth Mounded Concrete Bunker Disposal of Low-Level Radioactive Waste) of a four-task study entitled ''Criteria for Evaluating Engineered Facilities''. The overall objective of this study is to ensure that the criteria needed to evaluate five alternative low-level radioactive waste (LLW) disposal methods are available to potential license applicants. The earth mounded concrete bunker disposal alternative is one of several methods that may be proposed for disposal of low-level radioactive waste. The name of this alternative is descriptive of the disposal method used in France at the Centre de la Manche. Experience gained with this method at the Centre is described, including unit operations and features and components. Some improvements to the French system are recommended herein, including the use of previous backfill around monoliths and extending the limits of a low permeability surface layer. The applicability of existing criteria developed for near-surface disposal (10 CFR Part 61 Subpart D) to the earth mounded concrete bunker disposal method, as assessed in Task 1, are reassessed herein. With minor qualifications, these criteria were found to be applicable in the reassessment. These conclusions differ slightly from the Task 1 findings

Usefulness of MLPA in the detection of SHOX deletions.

Science.gov (United States)

Funari, Mariana F A; Jorge, Alexander A L; Souza, Silvia C A L; Billerbeck, Ana E C; Arnhold, Ivo J P; Mendonca, Berenice B; Nishi, Mirian Y

2010-01-01

SHOX haploinsufficiency causes a wide spectrum of short stature phenotypes, such as Leri-Weill dyschondrosteosis (LWD) and disproportionate short stature (DSS). SHOX deletions are responsible for approximately two thirds of isolated haploinsufficiency; therefore, it is important to determine the most appropriate methodology for detection of gene deletion. In this study, three methodologies for the detection of SHOX deletions were compared: the fluorescence in situ hybridization (FISH), microsatellite analysis and multiplex ligation-dependent probe amplification (MLPA). Forty-four patients (8 LWD and 36 DSS) were analyzed. The cosmid LLNOYCO3'M'34F5 was used as a probe for the FISH analysis and microsatellite analysis were performed using three intragenic microsatellite markers. MLPA was performed using commercial kits. Twelve patients (8 LWD and 4 DSS) had deletions in SHOX area detected by MLPA and 2 patients generated discordant results with the other methodologies. In the first case, the deletion was not detected by FISH. In the second case, both FISH and microsatellite analyses were unable to identify the intragenic deletion. In conclusion, MLPA was more sensitive, less expensive and less laborious; therefore, it should be used as the initial molecular method for the detection of SHOX gene deletion. Copyright © 2010 Elsevier Masson SAS. All rights reserved.

Submicroscopic duplication of the Wolf-Hirschhorn critical region with a 4p terminal deletion.

Science.gov (United States)

Roselló, M; Monfort, S; Orellana, C; Ferrer-Bolufer, I; Quiroga, R; Oltra, S; Martínez, F

2009-01-01

Chromosomal rearrangements in the short arm of chromosome 4 can result in 2 different clinical entities: Wolf-Hirschhorn syndrome (WHS), characterized by severe growth delay, mental retardation, microcephaly, 'Greek helmet' facies, and closure defects, or partial 4p trisomy, associated with multiple congenital anomalies, mental retardation, and facial dysmorphisms. We present clinical and laboratory findings in a patient who showed a small duplication in 4p16.3 associated with a subtle terminal deletion in the same chromosomal region. GTG-banding analyses, multiplex ligation-dependent probe amplification analyses, and studies by array-based comparative genomic hybridization were performed. The results of the analyses revealed a de novo 1.3 Mb deletion of the terminal 4p and a 1.1 Mb duplication in our patient, encompassing the WHS critical region. Interestingly, this unusual duplication/deletion rearrangement results in an intermediate phenotype that shares characteristics of the WHS and the 4p trisomy syndrome. The use of novel technologies in the genetic diagnosis leads to the description of new clinical syndromes; there is a growing list of microduplication syndromes. Therefore, we propose that overexpression of candidate genes in WHS (WHSC1, WHSC2 and LETM1) due to a duplication causes a clinical entity different to both the WHS and 4p trisomy syndrome. (c) 2009 S. Karger AG, Basel.

Detection of mitochondrial DNA deletions in human cells induced by ionizing radiation

International Nuclear Information System (INIS)

Liu, Qing-Jie; Feng, Jiang-Bin; Lu, Xue; Li, Yu-Wen; Chen, De-Qing

2008-01-01

Full text: Purpose: To screen the novel mitochondrial DNA (mt DNA) deletions induced by ionizing radiation, and analyze the several kinds of mt DNA deletions, known as 3895 bp, 889 bp, 7436 bp or 4934 bp deletions. Methods: Long-range PCR with two pairs of primers, which could amplify the whole human mitochondrial genome, was used to analyze the lymphoblastoid cell line before and after exposed to 10 Gy 60 Co γ-rays. The limited condition PCR was used to certify the possible mt DNA deletion showed by long-range PCR. The PCR products were purified, cloned, sequenced and the sequence result were BLASTed. Regular PCR or nest-PCR were used to analyze the 3895 bp, 889 bp, 7436 bp or 4934 bp deletions before and after radiation exposure. The final PCR products were purified, sequenced and BALSTed on standard human mitochondrial genome sequence database. Results: (1) The predicted bands of mt DNA were observed on the control cell lines, and the possible mt DNA deletions were also detected on the irradiated cell lines. The deletions were certified by the limited condition PCR. The sequence BLAST results of the cloned PCR products showed that two kinds of deletions, 7455 bp deletion (nt 475-7929 in heavy strand) and 9225 bp deletion (nt 7714-369 in heavy strand), which were between two 8 bp direct repeats. Further bioinformatics analysis showed that the two deletions were novel deletions. (2) The 889 bp and 3895 bp deletion were not detected for the cell line samples not exposed to 60 Co γ-rays. The 889 bp and 3895 bp deletions were detected on samples exposed to 10 Gy 60 Co γ-rays. The BALST results showed that the 889 bp and 3895 deletions flanked nt 11688 bp-12576, nt 548 bp-4443, respectively. The 7436 bp deletion levels were not changed much before and after irradiation. (3) The 4934 bp deletions had the same pattern as 7436 bp deletion, but it could induced by radiation. Conclusions: Ionizing radiation could induce the human lymphoblastoid two novel mt DNA

Automatic Modelling of Rubble Mound Breakwaters from LIDAR Data

Science.gov (United States)

Bueno, M.; Díaz-Vilariño, L.; González-Jorge, H.; Martínez-Sánchez, J.; Arias, P.

2015-08-01

Rubble mound breakwaters maintenance is critical to the protection of beaches and ports. LiDAR systems provide accurate point clouds from the emerged part of the structure that can be modelled to make it more useful and easy to handle. This work introduces a methodology for the automatic modelling of breakwaters with armour units of cube shape. The algorithm is divided in three main steps: normal vector computation, plane segmentation, and cube reconstruction. Plane segmentation uses the normal orientation of the points and the edge length of the cube. Cube reconstruction uses the intersection of three perpendicular planes and the edge length. Three point clouds cropped from the main point cloud of the structure are used for the tests. The number of cubes detected is around 56 % for two of the point clouds and 32 % for the third one over the total physical cubes. Accuracy assessment is done by comparison with manually drawn cubes calculating the differences between the vertexes. It ranges between 6.4 cm and 15 cm. Computing time ranges between 578.5 s and 8018.2 s. The computing time increases with the number of cubes and the requirements of collision detection.

Ku80-deleted cells are defective at base excision repair

International Nuclear Information System (INIS)

Li, Han; Marple, Teresa; Hasty, Paul

2013-01-01

Graphical abstract: - Highlights: • Ku80-deleted cells are hypersensitive to ROS and alkylating agents. • Cells deleted for Ku80, but not Ku70 or Lig4, have reduced BER capacity. • OGG1 rescues hypersensitivity to H 2 O 2 and paraquat in Ku80-mutant cells. • Cells deleted for Ku80, but not Lig4, are defective at repairing AP sites. • Cells deleted for Ku80, but not Lig4 or Brca2 exon 27, exhibit increased PAR. - Abstract: Ku80 forms a heterodimer with Ku70, called Ku, that repairs DNA double-strand breaks (DSBs) via the nonhomologous end joining (NHEJ) pathway. As a consequence of deleting NHEJ, Ku80-mutant cells are hypersensitive to agents that cause DNA DSBs like ionizing radiation. Here we show that Ku80 deletion also decreased resistance to ROS and alkylating agents that typically cause base lesions and single-strand breaks (SSBs). This is unusual since base excision repair (BER), not NHEJ, typically repairs these types of lesions. However, we show that deletion of another NHEJ protein, DNA ligase IV (Lig4), did not cause hypersensitivity to these agents. In addition, the ROS and alkylating agents did not induce γ-H2AX foci that are diagnostic of DSBs. Furthermore, deletion of Ku80, but not Lig4 or Ku70, reduced BER capacity. Ku80 deletion also impaired BER at the initial lesion recognition/strand scission step; thus, involvement of a DSB is unlikely. Therefore, our data suggests that Ku80 deletion impairs BER via a mechanism that does not repair DSBs

Ku80-deleted cells are defective at base excision repair

Energy Technology Data Exchange (ETDEWEB)

Li, Han [The University of Texas Health Science Center at San Antonio, The Institute of Biotechnology, The Department of Molecular Medicine, 15355 Lambda Drive, San Antonio, TX 78245-3207 (United States); Tumor Suppression Group, Spanish National Cancer Research Centre (CNIO), Madrid 28029 (Spain); Marple, Teresa [The University of Texas Health Science Center at San Antonio, The Institute of Biotechnology, The Department of Molecular Medicine, 15355 Lambda Drive, San Antonio, TX 78245-3207 (United States); Hasty, Paul, E-mail: hastye@uthscsa.edu [The University of Texas Health Science Center at San Antonio, The Institute of Biotechnology, The Department of Molecular Medicine, 15355 Lambda Drive, San Antonio, TX 78245-3207 (United States); Tumor Suppression Group, Spanish National Cancer Research Centre (CNIO), Madrid 28029 (Spain)

2013-05-15

Graphical abstract: - Highlights: • Ku80-deleted cells are hypersensitive to ROS and alkylating agents. • Cells deleted for Ku80, but not Ku70 or Lig4, have reduced BER capacity. • OGG1 rescues hypersensitivity to H{sub 2}O{sub 2} and paraquat in Ku80-mutant cells. • Cells deleted for Ku80, but not Lig4, are defective at repairing AP sites. • Cells deleted for Ku80, but not Lig4 or Brca2 exon 27, exhibit increased PAR. - Abstract: Ku80 forms a heterodimer with Ku70, called Ku, that repairs DNA double-strand breaks (DSBs) via the nonhomologous end joining (NHEJ) pathway. As a consequence of deleting NHEJ, Ku80-mutant cells are hypersensitive to agents that cause DNA DSBs like ionizing radiation. Here we show that Ku80 deletion also decreased resistance to ROS and alkylating agents that typically cause base lesions and single-strand breaks (SSBs). This is unusual since base excision repair (BER), not NHEJ, typically repairs these types of lesions. However, we show that deletion of another NHEJ protein, DNA ligase IV (Lig4), did not cause hypersensitivity to these agents. In addition, the ROS and alkylating agents did not induce γ-H2AX foci that are diagnostic of DSBs. Furthermore, deletion of Ku80, but not Lig4 or Ku70, reduced BER capacity. Ku80 deletion also impaired BER at the initial lesion recognition/strand scission step; thus, involvement of a DSB is unlikely. Therefore, our data suggests that Ku80 deletion impairs BER via a mechanism that does not repair DSBs.

4977-bp mitochondrial DNA deletion in infertile patients with varicocele.

Science.gov (United States)

Gashti, N G; Salehi, Z; Madani, A H; Dalivandan, S T

2014-04-01

Varicocele is the abnormal inflexion and distension of veins of the pampiniform plexus within spermatic cord and is one of the amendable causes of male infertility. It can increase reactive oxygen species (ROS) production in semen and cause oxidative stress. The purpose of this study was to analyse spermatozoa mtDNA 4977-bp deletion in infertile men with varicocele. To detect 4977-bp deletion in spermatozoa mtDNA, semen samples of 60 infertile patients with clinical varicocele and 90 normal men from northern Iran were prepared. After extraction of spermatozoa total DNA, Gap polymerase chain reaction (Gap PCR) was performed. 4977-bp deletion was observed in 81.66% of patients with varicocele, while approximately 15.55% of controls had this deletion. As spermatozoa from patients with varicocele had a high frequency of occurrence of 4977-bp deletion in mtDNA [OR = 24.18, 95% confidence interval (CI) = 10.15-57.57, P deletion in spermatozoa and cause infertility in north Iranian men. However, to determine the relation between sperm mtDNA 4977-bp deletion and varicocele-induced infertility, larger population-based studies are needed. It is concluded that there is an association between sperm mtDNA 4977-bp deletion and varicocele-induced infertility in the population studied. © 2013 Blackwell Verlag GmbH.

Microarray-based ultra-high resolution discovery of genomic deletion mutations

Science.gov (United States)

2014-01-01

Background Oligonucleotide microarray-based comparative genomic hybridization (CGH) offers an attractive possible route for the rapid and cost-effective genome-wide discovery of deletion mutations. CGH typically involves comparison of the hybridization intensities of genomic DNA samples with microarray chip representations of entire genomes, and has widespread potential application in experimental research and medical diagnostics. However, the power to detect small deletions is low. Results Here we use a graduated series of Arabidopsis thaliana genomic deletion mutations (of sizes ranging from 4 bp to ~5 kb) to optimize CGH-based genomic deletion detection. We show that the power to detect smaller deletions (4, 28 and 104 bp) depends upon oligonucleotide density (essentially the number of genome-representative oligonucleotides on the microarray chip), and determine the oligonucleotide spacings necessary to guarantee detection of deletions of specified size. Conclusions Our findings will enhance a wide range of research and clinical applications, and in particular will aid in the discovery of genomic deletions in the absence of a priori knowledge of their existence. PMID:24655320

41 CFR 51-2.3 - Notice of proposed addition or deletion.

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2010-07-01

... addition or deletion. 51-2.3 Section 51-2.3 Public Contracts and Property Management Other Provisions... or deletion. At least 30 days prior to the Committee's consideration of the addition or deletion of a... Register announcing the proposed addition or deletion and providing interested persons an opportunity to...

OCORRÊNCIA DE ESPÉCIES DE CUPINS DE MONTÍCULO EM PASTAGENS NO ESTADO DE GOIÁS THE OCCURRENCE OF MOUND-BUILDING TERMITE SPECIES IN PASTURES, IN GOIÁS, BRAZIL

Directory of Open Access Journals (Sweden)

Edinon Aguiar de Araújo

2007-09-01

Full Text Available

Este trabalho teve por objetivo identificar as espécies e as áreas ocupadas por cupins de montículos nas pastagens, visando estabelecer estratégias de controle para cada região do Estado de Goiás. Foram realizados levantamentos em 133 municípios que apresentaram, em média, 72,68 cupinzeiros/ha, com um diâmetro médio de 83,02 cm. Foram identificados dezenove gêneros do inseto, sendo 58% das amostras representadas por Cornitermes snyderi, 13,85% por C. cumulans, 6,35% por Procornitermes araujoi, 3,77% por espécies do gênero Syntermes e o restante (15,74% por outras espécies de menor importância.

PALAVRAS-CHAVE: Insecta; cupins; distribuição; pastagens.

This study had the purpose of identifying species and occurrence areas of mound termites in Goiás, Brazil, in order to establish control strategies. The survey was done in 133 municipalities evaluating the number of mounds/ha and mean diameter of mounds. We found an average of 72.68 mound/ha with a mean diameter of 83.02 cm. Nineteen insect genera were identified. Of these, 58% were identified as Cornitermes snyderi, 13.85% as C. cumulans, 6.35% as Procornitermes araujoi, 3.77% as species of Syntermes, and 15.74% were considered of minor importance.

KEY-WORDS: Insecta; termites; distribution; pastures.

2011 Mound Site Groundwater Plume Rebound Exercise and Follow-Up - 13440

Energy Technology Data Exchange (ETDEWEB)

Hooten, Gwendolyn [Mound Site Manager, U.S. Department of Energy Office of Legacy Management, Harrison, Ohio (United States); Cato, Rebecca; Lupton, Greg [S.M. Stoller Company, contractor to the U.S. Department of Energy Office of Legacy Management (United States)

2013-07-01

The Mound Site facility near Miamisburg, Ohio, opened in 1948 to support early atomic weapons programs. It grew into a research, development, and production facility performing work in support of the U.S. Department of Energy (DOE) weapons and energy programs. The plant was in operation until 1995. During the course of operation, an onsite landfill was created. The landfill was located over a finger of a buried valley aquifer, which is a sole drinking water source for much of the Miami Valley. In the 1980's, volatile organic compounds (VOCs) were discovered in groundwater at the Mound site. The site was placed on the National Priorities List on November 21, 1989. DOE signed a Comprehensive Environmental Response, Compensation, and Liability Act (CERCLA) Federal Facility Agreement with the U.S. Environmental Protection Agency (EPA) and the Ohio Environmental Protection Agency. The agreement became effective in October 1990. The area that included the landfill was designated Operational Unit 1 (OU-1). In 1995, a Record of Decision was signed that called for the installation and operation of a pump and treatment (P and T) system in order to prevent the VOCs in OU-1 groundwater from being captured by the onsite water production wells. In addition to the P and T system, a soil vapor extraction (SVE) system was installed in 1997 to accelerate removal of VOCs from groundwater in the OU-1 area. The SVE system was successful in removing large amounts of VOCs and continued to operate until 2007, when the amount of VOCs removed became minimal. A rebound study was started in February 2003 to determine how the groundwater system and contaminants would respond to shutting down the P and T system. The rebound test was stopped in February 2004 because predetermined VOC threshold concentrations were exceeded down-gradient of the landfill. The P and T and SVE systems were restarted after the termination of the rebound test. In 2006, the remediation of the Mound site was

Genetics Home Reference: 17q12 deletion syndrome

Science.gov (United States)

... with 17q12 deletion syndrome have delayed development (particularly speech and language delays), intellectual disability, or behavioral or psychiatric disorders. Behavioral and psychiatric conditions that have been reported in people with 17q12 deletion syndrome include autism ...

47 CFR 76.1601 - Deletion or repositioning of broadcast signals.

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2010-10-01

... 47 Telecommunication 4 2010-10-01 2010-10-01 false Deletion or repositioning of broadcast signals... RADIO SERVICES MULTICHANNEL VIDEO AND CABLE TELEVISION SERVICE Notices § 76.1601 Deletion or... to § 76.1601: No deletion or repositioning of a local commercial television station shall occur...

Development of tritium technology for the United States magnetic fusion energy program

International Nuclear Information System (INIS)

Anderson, J.L.; Wilkes, W.R.

1980-01-01

Tritium technology development for the DOE fusion program is taking place principally at three laboratories, Mound Facility, Argonne National Laboratory and the Los Alamos Scientific Laboratory. This paper will review the major aspects of each of the three programs and look at aspects of the tritium technology being developed at other laboratories within the United States. Facilities and experiments to be discussed include the Tritium Effluent Control Laboratory and the Tritium Storage and Delivery System for the Tokamak Fusion Test Reactor at Mound Facility; the Lithium Processing Test Loop and the solid breeder blanket studies at Argonne; and the Tritium Systems Test Assembly at Los Alamos

Attenuation of monkeypox virus by deletion of genomic regions

Science.gov (United States)

Lopera, Juan G.; Falendysz, Elizabeth A.; Rocke, Tonie E.; Osorio, Jorge E.

2015-01-01

Monkeypox virus (MPXV) is an emerging pathogen from Africa that causes disease similar to smallpox. Two clades with different geographic distributions and virulence have been described. Here, we utilized bioinformatic tools to identify genomic regions in MPXV containing multiple virulence genes and explored their roles in pathogenicity; two selected regions were then deleted singularly or in combination. In vitro and in vivostudies indicated that these regions play a significant role in MPXV replication, tissue spread, and mortality in mice. Interestingly, while deletion of either region led to decreased virulence in mice, one region had no effect on in vitro replication. Deletion of both regions simultaneously also reduced cell culture replication and significantly increased the attenuation in vivo over either single deletion. Attenuated MPXV with genomic deletions present a safe and efficacious tool in the study of MPX pathogenesis and in the identification of genetic factors associated with virulence.

Amino-acid composition after loop deletion drives domain swapping.

Science.gov (United States)

Nandwani, Neha; Surana, Parag; Udgaonkar, Jayant B; Das, Ranabir; Gosavi, Shachi

2017-10-01

Rational engineering of a protein to enable domain swapping requires an understanding of the sequence, structural and energetic factors that favor the domain-swapped oligomer over the monomer. While it is known that the deletion of loops between β-strands can promote domain swapping, the spliced sequence at the position of the loop deletion is thought to have a minimal role to play in such domain swapping. Here, two loop-deletion mutants of the non-domain-swapping protein monellin, frame-shifted by a single residue, were designed. Although the spliced sequence in the two mutants differed by only one residue at the site of the deletion, only one of them (YEIKG) promoted domain swapping. The mutant containing the spliced sequence YENKG was entirely monomeric. This new understanding that the domain swapping propensity after loop deletion may depend critically on the chemical composition of the shortened loop will facilitate the rational design of domain swapping. © 2017 The Protein Society.

Panchromatic cooperative hyperspectral adaptive wide band deletion repair method

Science.gov (United States)

Jiang, Bitao; Shi, Chunyu

2018-02-01

In the hyperspectral data, the phenomenon of stripe deletion often occurs, which seriously affects the efficiency and accuracy of data analysis and application. Narrow band deletion can be directly repaired by interpolation, and this method is not ideal for wide band deletion repair. In this paper, an adaptive spectral wide band missing restoration method based on panchromatic information is proposed, and the effectiveness of the algorithm is verified by experiments.

HOXA genes cluster: clinical implications of the smallest deletion

OpenAIRE

Pezzani, Lidia; Milani, Donatella; Manzoni, Francesca; Baccarin, Marco; Silipigni, Rosamaria; Guerneri, Silvana; Esposito, Susanna

2015-01-01

Background HOXA genes cluster plays a fundamental role in embryologic development. Deletion of the entire cluster is known to cause a clinically recognizable syndrome with mild developmental delay, characteristic facies, small feet with unusually short and big halluces, abnormal thumbs, and urogenital malformations. The clinical manifestations may vary with different ranges of deletions of HOXA cluster and flanking regions. Case presentation We report a girl with the smallest deletion reporte...

Role of DNA deletion length in mutation and cell survival

International Nuclear Information System (INIS)

Braby, L.A.; Morgan, T.L.

1992-01-01

A model is presented which is based on the assumption that malignant transformation, mutation, chromosome aberration, and reproductive death of cells are all manifestations of radiation induced deletions in the DNA of the cell, and that the size of the deletion in relation to the spacing of essential genes determines the consequences of that deletion. It is assumed that two independent types of potentially lethal lesions can result in DNA deletions, and that the relative numbers of these types of damage is dependent on radiation quality. The repair of the damage reduces the length of a deletion, but does not always eliminate it. The predictions of this model are in good agreement with a wide variety of experimental evidence. (author)

Wave Overtopping over Crown Walls and Run-up on Rubble Mound Breakwaters with Kolos Armour under Random Waves

OpenAIRE

A. Arunjith; S.A. Sannasiraj; V. Sundar

2013-01-01

The design of rubble mound structures like breakwaters and seawalls are influenced by the wave run-up and overtopping over them. The above phenomena largely depend on the type of the armour units as they directly interact with the incident waves. The hydrodynamic characteristics of various concrete armour units have been established by several researchers. A new armour block, ‘Kolos’, a modified version of Dolos, is considered in this study for a detailed investigation. An attempt is made to ...

32 CFR 310.34 - Amendment and deletion of system notices.

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2010-07-01

... 32 National Defense 2 2010-07-01 2010-07-01 false Amendment and deletion of system notices. 310.34... (CONTINUED) PRIVACY PROGRAM DOD PRIVACY PROGRAM Publication Requirements § 310.34 Amendment and deletion of... system. (see § 310.32(q)). (c) Deletion of system notices. (1) Whenever a system is discontinued...

Mosaic deletion of 20pter due to rescue by somatic recombination.

Science.gov (United States)

Martin, Megan M; Vanzo, Rena J; Sdano, Mallory R; Baxter, Adrianne L; South, Sarah T

2016-01-01

We report on a unique case of a mosaic 20pter-p13 deletion due to a somatic repair event identified by allele differentiating single nucleotide polymorphism (SNP) probes on chromosomal microarray. Small terminal deletions of 20p have been reported in a few individuals and appear to result in a variable phenotype. This patient was a 24-month-old female who presented with failure to thrive and speech delay. Chromosomal microarray analysis (CMA) performed on peripheral blood showed a 1.6 Mb deletion involving the terminus of 20p (20pter-20p13). This deletion appeared mosaic by CMA and this suspicion was confirmed by fluorescence in situ hybridization (FISH) analysis. Additionally, the deletion interval at 20p was directly adjacent to 15 Mb of mosaic copy-neutral loss of heterozygosity (LOH). The pattern of SNP probes was highly suggestive of a somatic repair event that resulted in rescue of the deleted region using the non-deleted homologue as a template. Structural mosaicism is rare and most often believed to be due to a postzygotic mechanism. This case demonstrates the additional utility of allele patterns to help distinguish mechanisms and in this case identified the possibility of either a post-zygotic repair of a germline deletion or a post-zygotic deletion with somatic recombination repair in a single step. © 2015 Wiley Periodicals, Inc.

75 FR 49481 - Procurement List; Additions and Deletion

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2010-08-13

... added to the Procurement List: Services Service Type/Locations: Laundry Service, Atlanta VA Medical...: Additions to and deletion from the Procurement List. SUMMARY: This action adds services to the Procurement... disabilities and deletes a service from the Procurement List previously furnished by such agency. DATES...

Phosphatase and tensin homologue deleted on chromosome 10 ...

African Journals Online (AJOL)

Phosphatase and tensin homologue deleted on chromosome 10 (PTEN) is a tumor suppressor gene deleted or mutated in many human cancers such as glioblastoma, spinal tumors, prostate, bladder, adrenals, thyroid, breast, endometrium, and colon cancers. They result from loss of heterozygosity (LOH) for the PTEN ...

Flow and Turbulence at Rubble-Mound Breakwater Armor Layers under Solitary Wave

DEFF Research Database (Denmark)

Jensen, Bjarne; Christensen, Erik Damgaard; Sumer, B. Mutlu

2015-01-01

This paper presents the results of an experimental investigation of the flow and turbulence at the armor layer of rubble-mound breakwaters during wave action. The study focused on the details of the flow and turbulence in the armor layer and on the effect of the porous core on flow and stability....... To isolate the processes involved with the flow in the porous core, experiments were conducted with increasing complexity. Specifically, three parallel experiments were performed including (1) an impermeable smooth breakwater slope, (2) an impermeable breakwater slope with large roughness elements added...... to the breakwater, and (3) a porous breakwater where the porous core was added below the breakwater front. One breakwater slope of 1:1.5 was applied. In this paper the focus is on the details of a single sequence of wave approach, run-up, and rundown. To isolate this sequence the experiments were performed applying...

Sequence homology at the breakpoint and clinical phenotype of mitochondrial DNA deletion syndromes.

Science.gov (United States)

Sadikovic, Bekim; Wang, Jing; El-Hattab, Ayman W; Landsverk, Megan; Douglas, Ganka; Brundage, Ellen K; Craigen, William J; Schmitt, Eric S; Wong, Lee-Jun C

2010-12-20

Mitochondrial DNA (mtDNA) deletions are a common cause of mitochondrial disorders. Large mtDNA deletions can lead to a broad spectrum of clinical features with different age of onset, ranging from mild mitochondrial myopathies (MM), progressive external ophthalmoplegia (PEO), and Kearns-Sayre syndrome (KSS), to severe Pearson syndrome. The aim of this study is to investigate the molecular signatures surrounding the deletion breakpoints and their association with the clinical phenotype and age at onset. MtDNA deletions in 67 patients were characterized using array comparative genomic hybridization (aCGH) followed by PCR-sequencing of the deletion junctions. Sequence homology including both perfect and imperfect short repeats flanking the deletion regions were analyzed and correlated with clinical features and patients' age group. In all age groups, there was a significant increase in sequence homology flanking the deletion compared to mtDNA background. The youngest patient group (deletion distribution in size and locations, with a significantly lower sequence homology flanking the deletion, and the highest percentage of deletion mutant heteroplasmy. The older age groups showed rather discrete pattern of deletions with 44% of all patients over 6 years old carrying the most common 5 kb mtDNA deletion, which was found mostly in muscle specimens (22/41). Only 15% (3/20) of the young patients (deletion, which is usually present in blood rather than muscle. This group of patients predominantly (16 out of 17) exhibit multisystem disorder and/or Pearson syndrome, while older patients had predominantly neuromuscular manifestations including KSS, PEO, and MM. In conclusion, sequence homology at the deletion flanking regions is a consistent feature of mtDNA deletions. Decreased levels of sequence homology and increased levels of deletion mutant heteroplasmy appear to correlate with earlier onset and more severe disease with multisystem involvement.

Multicomponent Seismic Analysis and Calibration to Improve Recovery from Algal Mounds: Application to the Roadrunner/Towaoc area of the Paradox Basin, UTE Mountain UTE Reservation, Colorado

International Nuclear Information System (INIS)

Joe Hachey

2007-01-01

The goals of this project were: (1) To enhance recovery of oil contained within algal mounds on the Ute Mountain Ute tribal lands. (2) To promote the use of advanced technology and expand the technical capability of the Native American Oil production corporations by direct assistance in the current project and dissemination of technology to other Tribes. (3) To develop an understanding of multicomponent seismic data as it relates to the variations in permeability and porosity of algal mounds, as well as lateral facies variations, for use in both reservoir development and exploration. (4) To identify any undiscovered algal mounds for field-extension within the area of seismic coverage. (5) To evaluate the potential for applying CO 2 floods, steam floods, water floods or other secondary or tertiary recovery processes to increase production. The technical work scope was carried out by: (1) Acquiring multicomponent seismic data over the project area; (2) Processing and reprocessing the multicomponent data to extract as much geological and engineering data as possible within the budget and time-frame of the project; (3) Preparing maps and data volumes of geological and engineering data based on the multicomponent seismic and well data; (4) Selecting drilling targets if warranted by the seismic interpretation; (5) Constructing a static reservoir model of the project area; and (6) Constructing a dynamic history-matched simulation model from the static model. The original project scope covered a 6 mi 2 (15.6 km 2 ) area encompassing two algal mound fields (Towaoc and Roadrunner). 3D3C seismic data was to acquired over this area to delineate mound complexes and image internal reservoir properties such as porosity and fluid saturations. After the project began, the Red Willow Production Company, a project partner and fully-owned company of the Southern Ute Tribe, contributed additional money to upgrade the survey to a nine-component (3D9C) survey. The purpose of this upgrade

Multicomponent Seismic Analysis and Calibration to Improve Recovery from Algal Mounds: Application to the Roadrunner/Towaoc area of the Paradox Basin, UTE Mountain UTE Reservation, Colorado

Energy Technology Data Exchange (ETDEWEB)

Joe Hachey

2007-09-30

The goals of this project were: (1) To enhance recovery of oil contained within algal mounds on the Ute Mountain Ute tribal lands. (2) To promote the use of advanced technology and expand the technical capability of the Native American Oil production corporations by direct assistance in the current project and dissemination of technology to other Tribes. (3) To develop an understanding of multicomponent seismic data as it relates to the variations in permeability and porosity of algal mounds, as well as lateral facies variations, for use in both reservoir development and exploration. (4) To identify any undiscovered algal mounds for field-extension within the area of seismic coverage. (5) To evaluate the potential for applying CO{sub 2} floods, steam floods, water floods or other secondary or tertiary recovery processes to increase production. The technical work scope was carried out by: (1) Acquiring multicomponent seismic data over the project area; (2) Processing and reprocessing the multicomponent data to extract as much geological and engineering data as possible within the budget and time-frame of the project; (3) Preparing maps and data volumes of geological and engineering data based on the multicomponent seismic and well data; (4) Selecting drilling targets if warranted by the seismic interpretation; (5) Constructing a static reservoir model of the project area; and (6) Constructing a dynamic history-matched simulation model from the static model. The original project scope covered a 6 mi{sup 2} (15.6 km{sup 2}) area encompassing two algal mound fields (Towaoc and Roadrunner). 3D3C seismic data was to acquired over this area to delineate mound complexes and image internal reservoir properties such as porosity and fluid saturations. After the project began, the Red Willow Production Company, a project partner and fully-owned company of the Southern Ute Tribe, contributed additional money to upgrade the survey to a nine-component (3D9C) survey. The purpose

76 FR 78248 - Procurement List; Addition and Deletions

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2011-12-16

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78 FR 21916 - Procurement List; Addition And Deletions

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2013-04-12

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42 CFR 401.118 - Deletion of identifying details.

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2010-10-01

... 42 Public Health 2 2010-10-01 2010-10-01 false Deletion of identifying details. 401.118 Section 401.118 Public Health CENTERS FOR MEDICARE & MEDICAID SERVICES, DEPARTMENT OF HEALTH AND HUMAN... Deletion of identifying details. When CMS publishes or otherwise makes available an opinion or order...

19 CFR 176.22 - Deletion of protest or entry number.

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2010-04-01

... 19 Customs Duties 2 2010-04-01 2010-04-01 false Deletion of protest or entry number. 176.22... Facts § 176.22 Deletion of protest or entry number. If any protest number or entry number is to be... authorized official making and approving the deletion. [T.D. 70-181, 35 FR 13433, Aug. 22, 1970] ...

NPL deletion policy for RCRA-regulated TSD facilities finalized

International Nuclear Information System (INIS)

Anon.

1995-01-01

Under a new policy published by EPA on March 20, 1995, certain sites may be deleted from the National Priorities List (NPL) and deferred to RCRA corrective action. To be deleted from the NPL, a site must (1) be regulated under RCRA as a treatment, storage, or disposal (TSD) facility and (2) meet the four criteria specified by EPA. The new NPL deletion policy, which does not pertain to federal TSD facilities, became effective on April 19, 1995. 1 tab

The rates and patterns of deletions in the human factor IX gene

Energy Technology Data Exchange (ETDEWEB)

Ketterling, R.P.; Vielhaber, E.L.; Lind, T.J.; Thorland, E.C.; Sommer S.S. (Mayo Clinic/Foundation, Rochester, MN (United States))

1994-02-01

Deletions are commonly observed in genes with either segments of highly homologous sequences or excessive gene length. However, in the factor IX gene and in most genes, deletions (of [ge]21 bp) are uncommon. The authors have analyzed DNA from 290 families with hemophilia B (203 independent mutations) and have found 12 deletions >20 bp. Eleven of these are >2 kb (range >3-163 kb), and one is 1.1 kb. The junctions of the four deletions that are completely contained within the factor IX gene have been determined. A novel mutation occurred in patient HB128: the data suggest that a 26.8-kb deletion occurred between two segments of alternating purines and pyrimidines and that a 2.3-kb sense strand segment derived from the deleted region was inserted. For a sample of 203 independent mutations, the authors estimate the [open quotes]baseline[close quotes] rates of deletional mutation per base pair per generation as a function of size. The rate for large (>2 kb)I deletions is exceedingly low. For every mutational event in which a given base is at the junction of a large deletion, there are an estimated 58 microdeletions (<20 bp) and 985 single-base substitutions at that base. Analysis of the nine reported deletion junctions in the factor IX gene literature reveals that (i) five are associated with inversion, orphan sequences, or sense strand insertions; (ii) four are simple deletions that display an excess of short direct repeats at their junctions; (iii) there is no dramatic clustering of junctions within the gene; and (iv) with the exception of alternating purines and pyrimidines, deletion junctions are not preferentially associated with repetitive DNA. 58 refs., 5 figs., 5 tabs.

The DrosDel Deletion Collection: A Drosophila Genomewide Chromosomal Deficiency Resource

OpenAIRE

Ryder, Edward; Ashburner, Michael; Bautista-Llacer, Rosa; Drummond, Jenny; Webster, Jane; Johnson, Glynnis; Morley, Terri; Chan, Yuk Sang; Blows, Fiona; Coulson, Darin; Reuter, Gunter; Baisch, Heiko; Apelt, Christian; Kauk, Andreas; Rudolph, Thomas

2007-01-01

We describe a second-generation deficiency kit for Drosophila melanogaster composed of molecularly mapped deletions on an isogenic background, covering ∼77% of the Release 5.1 genome. Using a previously reported collection of FRT-bearing P-element insertions, we have generated 655 new deletions and verified a set of 209 deletion-bearing fly stocks. In addition to deletions, we demonstrate how the P elements may also be used to generate a set of custom inversions and duplications, particularly...

A French multicenter study of over 700 patients with 22q11 deletions diagnosed using FISH or aCGH.

Science.gov (United States)

Poirsier, Céline; Besseau-Ayasse, Justine; Schluth-Bolard, Caroline; Toutain, Jérôme; Missirian, Chantal; Le Caignec, Cédric; Bazin, Anne; de Blois, Marie Christine; Kuentz, Paul; Catty, Marie; Choiset, Agnès; Plessis, Ghislaine; Basinko, Audrey; Letard, Pascaline; Flori, Elisabeth; Jimenez, Mélanie; Valduga, Mylène; Landais, Emilie; Lallaoui, Hakima; Cartault, François; Lespinasse, James; Martin-Coignard, Dominique; Callier, Patrick; Pebrel-Richard, Céline; Portnoi, Marie-France; Busa, Tiffany; Receveur, Aline; Amblard, Florence; Yardin, Catherine; Harbuz, Radu; Prieur, Fabienne; Le Meur, Nathalie; Pipiras, Eva; Kleinfinger, Pascale; Vialard, François; Doco-Fenzy, Martine

2016-06-01

Although 22q11.2 deletion syndrome (22q11.2DS) is the most recurrent human microdeletion syndrome associated with a highly variable phenotype, little is known about the condition's true incidence and the phenotype at diagnosis. We performed a multicenter, retrospective analysis of postnatally diagnosed patients recruited by members of the Association des Cytogénéticiens de Langue Française (the French-Speaking Cytogeneticists Association). Clinical and cytogenetic data on 749 cases diagnosed between 1995 and 2013 were collected by 31 French cytogenetics laboratories. The most frequent reasons for referral of postnatally diagnosed cases were a congenital heart defect (CHD, 48.6%), facial dysmorphism (49.7%) and developmental delay (40.7%). Since 2007 (the year in which array comparative genomic hybridization (aCGH) was introduced for the routine screening of patients with intellectual disability), almost all cases have been diagnosed using FISH (96.1%). Only 15 cases (all with an atypical phenotype) were diagnosed with aCGH; the deletion size ranged from 745 to 2904 kb. The deletion was inherited in 15.0% of cases and was of maternal origin in 85.5% of the latter. This is the largest yet documented cohort of patients with 22q11.2DS (the most commonly diagnosed microdeletion) from the same population. French cytogenetics laboratories diagnosed at least 108 affected patients (including fetuses) per year from among a national population of ∼66 million. As observed for prenatal diagnoses, CHDs were the most frequently detected malformation in postnatal diagnoses. The most common CHD in postnatal diagnoses was an isolated septal defect.

Sorting genomes by reciprocal translocations, insertions, and deletions.

Science.gov (United States)

Qi, Xingqin; Li, Guojun; Li, Shuguang; Xu, Ying

2010-01-01

The problem of sorting by reciprocal translocations (abbreviated as SBT) arises from the field of comparative genomics, which is to find a shortest sequence of reciprocal translocations that transforms one genome Pi into another genome Gamma, with the restriction that Pi and Gamma contain the same genes. SBT has been proved to be polynomial-time solvable, and several polynomial algorithms have been developed. In this paper, we show how to extend Bergeron's SBT algorithm to include insertions and deletions, allowing to compare genomes containing different genes. In particular, if the gene set of Pi is a subset (or superset, respectively) of the gene set of Gamma, we present an approximation algorithm for transforming Pi into Gamma by reciprocal translocations and deletions (insertions, respectively), providing a sorting sequence with length at most OPT + 2, where OPT is the minimum number of translocations and deletions (insertions, respectively) needed to transform Pi into Gamma; if Pi and Gamma have different genes but not containing each other, we give a heuristic to transform Pi into Gamma by a shortest sequence of reciprocal translocations, insertions, and deletions, with bounds for the length of the sorting sequence it outputs. At a conceptual level, there is some similarity between our algorithm and the algorithm developed by El Mabrouk which is used to sort two chromosomes with different gene contents by reversals, insertions, and deletions.

Sorptive removal of arsenate using termite mound.

Science.gov (United States)

Fufa, Fekadu; Alemayehu, Esayas; Lennartz, Bernd

2014-01-01

Long-term consumption of arsenic results in severe and permanent health damages. The aim of the study was to investigate arsenate (As(V)) sorption capacity of termite mound (TM), containing mainly silicon, aluminum, iron and titanium oxides, under batch adsorption setup. The pattern of As(V) removal with varying contact time, solution pH, adsorbent dose, As(V) concentration and competing anions was investigated. Dissolution of the adsorbent was insignificant under the equilibrium conditions. Equilibrium was achieved within 40 min of agitation time. Kinetic data of As(V) adsorption followed well the pseudo-second order equation (R(2) > 0.99). High As(V) removal efficiency (∼ 99%) was observed over a pH range ∼ 3-∼ 10, which is of great importance in the practical application. The Freundlich and Dubinin-Radushkevich isotherms well described (R(2) > 0.99, χ(2) ∼ 0.05) the equilibrium As(V) adsorption, giving a coefficient of adsorption 1.48 mg(1-1/n)L(1/n)/g and a saturation capacity 13.50 mg/g respectively. The obtained value of mean sorption energy (EDR = 13.32 kJ/mol) suggested the chemisorption mechanism of As(V) adsorption on TM. The removal of As(V) was significantly decreased in the presence of phosphate ions. The As(V) loaded adsorbent was successfully regenerated using NaOH solution with insignificant loss of metals. Therefore, the results of the study demonstrated that TM could be considered as a promising adsorbent for the treatment of As(V) in drinking water. Copyright © 2013 Elsevier Ltd. All rights reserved.

Deletion of 7q33-q35 in a Patient with Intellectual Disability and Dysmorphic Features: Further Characterization of 7q Interstitial Deletion Syndrome

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Kristen Dilzell

2015-01-01

Full Text Available This case report concerns a 16-year-old girl with a 9.92 Mb, heterozygous interstitial chromosome deletion at 7q33-q35, identified using array comparative genomic hybridization. The patient has dysmorphic facial features, intellectual disability, recurrent infections, self-injurious behavior, obesity, and recent onset of hemihypertrophy. This patient has overlapping features with previously reported individuals who have similar deletions spanning the 7q32-q36 region. It has been difficult to describe an interstitial 7q deletion syndrome due to variations in the sizes and regions in the few patients reported in the literature. This case contributes to the further characterization of an interstitial distal 7q deletion syndrome.

DNA-based detection of chromosome deletion and amplification: diagnostic and mechanistic significance

International Nuclear Information System (INIS)

Latt, S.A.; Lalande, M.; Donlon, T.

1986-01-01

This paper describes a few of the many possible examples in which application of a molecular cytogenetic approach can ultimately lead to a new, important understanding about the statics and dynamics of human chromosome structure. In the case of retinoblastoma, cytological observations of deletions and linkage analysis have positioned the retinoblastoma locus to bank 13q14. This locus is grossly deleted in some spontaneous tumors. It is still necessary to locate more precisely and characterize the nature of the retinoblastoma locus, as well as the basis for the heterogeneity in deletions removing one copy of this locus. One is left with the possibility that those deletions that may be observed cytologically reflect but the tip of the iceberg of deletions; detection of others may require molecular probes. A related question is the nature of the DNA sequences at the deletion boundaries and the role they play in promoting these deletions

Delayed chromosomal instability caused by large deletion

International Nuclear Information System (INIS)

Ojima, M.; Suzuki, K.; Kodama, S.; Watanabe, M.

2003-01-01

Full text: There is accumulating evidence that genomic instability, manifested by the expression of delayed phenotypes, is induced by X-irradiation but not by ultraviolet (UV) light. It is well known that ionizing radiation, such as X-rays, induces DNA double strand breaks, but UV-light mainly causes base damage like pyrimidine dimers and (6-4) photoproducts. Although the mechanism of radiation-induced genomic instability has not been thoroughly explained, it is suggested that DNA double strand breaks contribute the induction of genomic instability. We examined here whether X-ray induced gene deletion at the hprt locus induces delayed instability in chromosome X. SV40-immortalized normal human fibroblasts, GM638, were irradiated with X-rays (3, 6 Gy), and the hprt mutants were isolated in the presence of 6-thioguanine (6-TG). A 2-fold and a 60-fold increase in mutation frequency were found by 3 Gy and 6 Gy irradiation, respectively. The molecular structure of the hprt mutations was determined by multiplex polymerase chain reaction of nine exons. Approximately 60% of 3 Gy mutants lost a part or the entire hprt gene, and the other mutants showed point mutations like spontaneous mutants. All 6 Gy mutants show total gene deletion. The chromosomes of the hprt mutants were analyzed by Whole Human Chromosome X Paint FISH or Xq telomere FISH. None of the point or partial gene deletion mutants showed aberrations of X-chromosome, however total gene deletion mutants induced translocations and dicentrics involving chromosome X. These results suggest that large deletion caused by DNA double strand breaks destabilizes chromosome structure, which may be involved in an induction of radiation-induced genomic instability

Generalised deletion designs | Gachii | African Journal of Science ...

African Journals Online (AJOL)

In this paper asymmetrical single replicate factorial designs are constructed from symmetrical single replicate factorial designs using the deletion technique. The study is along the lines of Voss(1986), Chauhan(1989) and Gachii and Odhiambo(1997). We give results for the general order deletion designs of the form sn-m1(s ...

Performance of quantum cloning and deleting machines over coherence

Science.gov (United States)

Karmakar, Sumana; Sen, Ajoy; Sarkar, Debasis

2017-10-01

Coherence, being at the heart of interference phenomena, is found to be an useful resource in quantum information theory. Here we want to understand quantum coherence under the combination of two fundamentally dual processes, viz., cloning and deleting. We found the role of quantum cloning and deletion machines with the consumption and generation of quantum coherence. We establish cloning as a cohering process and deletion as a decohering process. Fidelity of the process will be shown to have connection with coherence generation and consumption of the processes.

Mars Science Laboratory: Mission, Landing Site, and Initial Results

Science.gov (United States)

Grotzinger, John; Blake, D.; Crisp, J.; Edgett, K.; Gellert, R.; Gomez-Elvira, J.; Hassler, D.; Mahaffy, P.; Malin, M.; Meyer, M.; Mitrofanov, I.; Vasavada, A.; Wiens, R.

2012-10-01

Scheduled to land on August 5, 2012, the Mars Science Laboratory rover, Curiosity, will conduct an investigation of modern and ancient environments. Recent mission results will be discussed. Curiosity has a lifetime of at least one Mars year ( 23 months), and drive capability of at least 20 km. The MSL science payload was specifically assembled to assess habitability and includes a gas chromatograph-mass spectrometer and gas analyzer that will search for organic carbon in rocks, regolith fines, and the atmosphere; an x-ray diffractometer that will determine mineralogical diversity; focusable cameras that can image landscapes and rock/regolith textures in natural color; an alpha-particle x-ray spectrometer for in situ determination of rock and soil chemistry; a laser-induced breakdown spectrometer to remotely sense the chemical composition of rocks and minerals; an active neutron spectrometer designed to search for water in rocks/regolith; a weather station to measure modern-day environmental variables; and a sensor designed for continuous monitoring of background solar and cosmic radiation. The 155-km diameter Gale Crater was chosen as Curiosity’s field site based on several attributes: an interior mound of ancient flat-lying strata extending almost 5 km above the elevation of the landing site; the lower few hundred meters of the mound show a progression with relative age from clay-bearing to sulfate-bearing strata, separated by an unconformity from overlying likely anhydrous strata; the landing ellipse is characterized by a mixture of alluvial fan and high thermal inertia/high albedo stratified deposits; and a number of stratigraphically/geomorphically distinct fluvial features. Gale’s regional context and strong evidence for a progression through multiple potentially habitable environments, represented by a stratigraphic record of extraordinary extent, insure preservation of a rich record of the environmental history of early Mars.

Familial deletion 18p syndrome: case report

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Lemyre Emmanuelle

2006-07-01

Full Text Available Abstract Background Deletion 18p is a frequent deletion syndrome characterized by dysmorphic features, growth deficiencies, and mental retardation with a poorer verbal performance. Until now, five families have been described with limited clinical description. We report transmission of deletion 18p from a mother to her two daughters and review the previous cases. Case presentation The proband is 12 years old and has short stature, dysmorphic features and moderate mental retardation. Her sister is 9 years old and also has short stature and similar dysmorphic features. Her cognitive performance is within the borderline to mild mental retardation range. The mother also presents short stature. Psychological evaluation showed moderate mental retardation. Chromosome analysis from the sisters and their mother revealed the same chromosomal deletion: 46, XX, del(18(p11.2. Previous familial cases were consistent regarding the transmission of mental retardation. Our family differs in this regard with variable cognitive impairment and does not display poorer verbal than non-verbal abilities. An exclusive maternal transmission is observed throughout those families. Women with del(18p are fertile and seem to have a normal miscarriage rate. Conclusion Genetic counseling for these patients should take into account a greater range of cognitive outcome than previously reported.

Analysis of Dystrophin Gene Deletions by Multiplex PCR in Moroccan Patients

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Aziza Sbiti

2002-01-01

Full Text Available Duchenne and Becker muscular dystrophy (DMD and BMD are X-linked diseases resulting from a defect in the dystrophin gene located on Xp21. DMD is the most frequent neuromuscular disease in humans (1/3500 male newborn. Deletions in the dystrophin gene represent 65% of mutations in DMD/BMD patients. We have analyzed DNA from 72 Moroccan patients with DMD/BMD using the multiplex polymerase chain reaction (PCR to screen for exon deletions within the dystrophin gene, and to estimate the frequency of these abnormalities. We found dystrophin gene deletions in 37 cases. Therefore the frequency in Moroccan DMD/BMD patients is about 51.3%. All deletions were clustered in the two known hot-spots regions, and in 81% of cases deletions were detected in the region from exon 43 to exon 52. These findings are comparable to those reported in other studies. It is important to note that in our population, we can first search for deletions of DMD gene in the most frequently deleted exons determined by this study. This may facilitate the molecular diagnosis of DMD and BMD in our country.

Partial USH2A deletions contribute to Usher syndrome in Denmark.

Science.gov (United States)

Dad, Shzeena; Rendtorff, Nanna D; Kann, Erik; Albrechtsen, Anders; Mehrjouy, Mana M; Bak, Mads; Tommerup, Niels; Tranebjærg, Lisbeth; Rosenberg, Thomas; Jensen, Hanne; Møller, Lisbeth B

2015-12-01

Usher syndrome is an autosomal recessive disorder characterized by congenital hearing impairment, progressive visual loss owing to retinitis pigmentosa and in some cases vestibular dysfunction. Usher syndrome is divided into three subtypes, USH1, USH2 and USH3. Twelve loci and eleven genes have so far been identified. Duplications and deletions in PCDH15 and USH2A that lead to USH1 and USH2, respectively, have previously been identified in patients from United Kingdom, Spain and Italy. In this study, we investigate the proportion of exon deletions and duplications in PCDH15 and USH2A in 20 USH1 and 30 USH2 patients from Denmark using multiplex ligation-dependent probe amplification (MLPA). Two heterozygous deletions were identified in USH2A, but no deletions or duplications were identified in PCDH15. Next-generation mate-pair sequencing was used to identify the exact breakpoints of the two deletions identified in USH2A. Our results suggest that USH2 is caused by USH2A exon deletions in a small fraction of the patients, whereas deletions or duplications in PCDH15 might be rare in Danish Usher patients.

On the anomalous concentrations of uranium in sediments from hydrothermal mounds. A geochemical roll-type mechanism

International Nuclear Information System (INIS)

Bernat, M.; Benhassaine, A.

1987-01-01

Sediments close to the nontronite formations of hydrothermal mounds often show anomalously high concentrations of uranium. This is frequently interpreted as being due to seeping of low temperature U bearing hydrothermal water through the basal basalt and into the overlying sediments. But we think that this phenomenon is the consequence of leaching of the sediment by hydrothermal water initially depleted in uranium. The migration of U is favoured by the pH of these water which dissolve the iron oxides and hydroxides giving Fe +++ ions in solution. The location and strength of the formed U anomalies are controlled by geochemical and hydrodynamicals factors. 22 refs [fr

36 CFR 902.14 - Deletion of nondiscloseable information from requested records.

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2010-07-01

... 36 Parks, Forests, and Public Property 3 2010-07-01 2010-07-01 false Deletion of nondiscloseable... AVENUE DEVELOPMENT CORPORATION FREEDOM OF INFORMATION ACT General Administration § 902.14 Deletion of... segregable after deletion of the nondiscloseable portions, will be released. If the information in the...

46 CFR 67.513 - Application for evidence of deletion from documentation.

Science.gov (United States)

2010-10-01

... 46 Shipping 2 2010-10-01 2010-10-01 false Application for evidence of deletion from documentation... AND MEASUREMENT OF VESSELS DOCUMENTATION OF VESSELS Fees § 67.513 Application for evidence of deletion from documentation. An application fee is charged for evidence of deletion from documentation in...

Conditional Deletion of Pten Causes Bronchiolar Hyperplasia

OpenAIRE

Davé, Vrushank; Wert, Susan E.; Tanner, Tiffany; Thitoff, Angela R.; Loudy, Dave E.; Whitsett, Jeffrey A.

2007-01-01

Tumor suppressor phosphatase and tensin homolog deleted on chromosome 10 (PTEN) is a lipid phosphatase that regulates multiple cellular processes including cell polarity, migration, proliferation, and carcinogenesis. In this work, we demonstrate that conditional deletion of Pten (PtenΔ/Δ) in the respiratory epithelial cells of the developing mouse lung caused epithelial cell proliferation and hyperplasia as early as 4 to 6 weeks of age. While bronchiolar cell differentiation was normal, as in...

34 CFR 5.16 - Deletion of identifying details.

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2010-07-01

... 34 Education 1 2010-07-01 2010-07-01 false Deletion of identifying details. 5.16 Section 5.16 Education Office of the Secretary, Department of Education AVAILABILITY OF INFORMATION TO THE PUBLIC PURSUANT TO PUB. L. 90-23 (Eff. until 7-14-10) What Records Are Available § 5.16 Deletion of identifying...

Strategic Petroleum Reserve (SPR) additional geologic site characterization studies, Bryan Mound Salt Dome, Texas

Energy Technology Data Exchange (ETDEWEB)

Neal, J.T. [Sandia National Labs., Albuquerque, NM (United States); Magorian, T.R.; Ahmad, S. [Acres International Corp., Amherst, NY (United States)

1994-11-01

This report revises the original report that was published in 1980. Some of the topics covered in the earlier report were provisional and it is now practicable to reexamine them using new or revised geotechnical data and that obtained from SPR cavern operations, which involves 16 new caverns. Revised structure maps and sections show interpretative differences as compared with the 1980 report and more definition in the dome shape and caprock structural contours, especially a major southeast-northwest trending anomalous zone. The original interpretation was of westward tilt of the dome, this revision shows a tilt to the southeast, consistent with other gravity and seismic data. This interpretation refines the evaluation of additional cavern space, by adding more salt buffer and allowing several more caverns. Additional storage space is constrained on this nearly full dome because of low-lying peripheral wetlands, but 60 MMBBL or more of additional volume could be gained in six or more new caverns. Subsidence values at Bryan Mound are among the lowest in the SPR system, averaging about 11 mm/yr (0.4 in/yr), but measurement and interpretation issues persist, as observed values are about the same as survey measurement accuracy. Periodic flooding is a continuing threat because of the coastal proximity and because peripheral portions of the site are at elevations less than 15 ft. This threat may increase slightly as future subsidence lowers the surface, but the amount is apt to be small. Caprock integrity may be affected by structural features, especially the faulting associated with anomalous zones. Injection wells have not been used extensively at Bryan Mound, but could be a practicable solution to future brine disposal needs. Environmental issues center on the areas of low elevation that are below 15 feet above mean sea level: the coastal proximity and lowland environment combined with the potential for flooding create conditions that require continuing surveillance.

Clinical and molecuar characterization of Brazilian patients with growth hormone gene deletions

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I.J.P. Arnhold

1998-04-01

Full Text Available Genomic DNA from 23 patients with isolated growth hormone (GH deficiency (12 males and 11 females: heights -4.9 ± 1.4 SDS was screened for GH gene deletions by restriction endonuclease analysis of polymerase chain reaction amplification products. Three unrelated patients had typical features of severe GH deficiency and deletions (6.7 kb in two and 7.6 kb in one of the GH gene. The two patients with 6.7-kb deletions developed growth-attenuating anti-GH antibodies whereas the patient with the 7.6-kb deletion continued to grow with GH replacement therapy. Our finding that 3/23 (~13% Brazilian subjects had GH gene deletions agrees with previous studies of severe isolated GH deficiency subjects in other populations. Two of three subjects (67% with deletions developed blocking antibodies despite administration of exogenous GH at low doses. Interestingly, only 1/10 of cases with affected relatives or parental consanguinity had GH-1 gene deletions

UCP2 and 3 deletion screening and distribution in 15 pig breeds.

Science.gov (United States)

Li, Yanhua; Li, Hanjie; Zhao, Xingbo; Li, Ning; Wu, Changxin

2007-02-01

The uncoupling protein family is a mitochondrial anion carrier family. It plays an important role in the biological traits of animal body weight, basal metabolic rate and energy conversion. Using PCR and PCR-SSCP, we scanned the porcine uncoupling protein 2 gene (UCP2) and uncoupling protein 3 gene (UCP3) and found seven deletion sites, three in UCP2 and four in UCP3. The deletions in 15 pig breeds showed that deletion influenced weight. The genotype compounding of seven deletion sites in 15 pig breeds had significant effects on performance traits of the pig, such as body weight. We predicted the potential protein factor binding sites using the transcription factor analysis tool TFSearch version 1.3 online. Two deletions (1830 nt and 3219 nt) in UCP3 were found to change the transcriptional factor sites. The 16 bp deletion in 1830 nt added a SP1 site and a 6 bp deletion in 3219 nt removed two MZF1 sites. Seven deletion polymorphisms were covered in introns of linkage genes of UCP2 and UCP3, showing that UCPs have conservation and genetic reliability.

Molecular studies of deletions at the human steroid sulfatase locus

International Nuclear Information System (INIS)

Shapiro, L.J.; Yen, P.; Pomerantz, D.; Martin, E.; Rolewic, L.; Mohandas, T.

1989-01-01

The human steroid sulfatase gene (STS) is located on the distal X chromosome short arm close to the pseudoautosomal region but in a segment of DNA that is unique to the X chromosome. In contrast to most X chromosome-encoded genes, STS expression is not extinguished during the process of X chromosome inactivation. Deficiency of STS activity produced the syndrome of X chromosome-linked ichthyosis, which is one of the most common inborn errors of metabolism in man. Approximately 90% of STS - individuals have large deletions at the STS locus. The authors and others have found that the end points of such deletions are heterogeneous in their location. One recently ascertained subject was observed to have a 40-kilobase deletion that is entirely intragenic, permitting the cloning and sequencing of the deletion junction. Studies of this patient and of other X chromosome sequences in other subjects permit some insight into the mechanism(s) responsible for generating frequent deletions on the short arm of the X chromosome

Clival encephalocele and 5q15 deletion: a case report.

Science.gov (United States)

Puvabanditsin, Surasak; Malik, Imran; Garrow, Eugene; Francois, Lissa; Mehta, Rajeev

2015-03-01

A preterm neonate presenting with respiratory distress after birth was found to have a clival encephalocele, which is a variant of a basal encephalocele, and hypoplasia of the cerebellum. Genetic studies revealed a small deletion of the long arm of chromosome 5: 5q15 deletion. We report a rare variant of a basal encephalocele with a cerebellar malformation and 5q15 deletion. © The Author(s) 2014.

Male gametophytic sterility. 1 - Gametic sterilities and deletions in petunia

Energy Technology Data Exchange (ETDEWEB)

Cornu, A.; Maizonnier, D. (Station d' Amelioration des Plantes de l' I.N.R.A., Dijon (France))

1982-01-01

Terminal deletions induced by ionizing radiations in Petunia are not sexually transmitted. Cytogenetic study of plants with a heterozygous deletion and their progenies shows that this lack of transmission is accompanied by a gametic semi-sterility due to the fact that gametes carrying the deleted chromosome are not viable. The interest of such a male sterility with a gametophytic determinism for the study of sporophyte-gametophyte relationships is underlined.

Deficiency of Interleukin-1 Receptor Antagonist (DIRA): Report of the First Indian Patient and a Novel Deletion Affecting IL1RN.

Science.gov (United States)

Mendonca, Leonardo O; Malle, Louise; Donovan, Frank X; Chandrasekharappa, Settara C; Montealegre Sanchez, Gina A; Garg, Megha; Tedgard, Ulf; Castells, Mariana; Saini, Shiv S; Dutta, Sourabh; Goldbach-Mansky, Raphaela; Suri, Deepti; Jesus, Adriana A

2017-07-01

Deficiency of interleukin-1 receptor antagonist (DIRA) is a rare life-threatening autoinflammatory disease caused by autosomal recessive mutations in IL1RN. DIRA presents clinically with early onset generalized pustulosis, multifocal osteomyelitis, and elevation of acute phase reactants. We evaluated and treated an antibiotic-unresponsive patient with presumed DIRA with recombinant IL-1Ra (anakinra). The patient developed anaphylaxis to anakinra and was subsequently desensitized. Genetic analysis of IL1RN was undertaken and treatment with anakinra was initiated. A 5-month-old Indian girl born to healthy non-consanguineous parents presented at the third week of life with irritability, sterile multifocal osteomyelitis including ribs and clavicles, a mild pustular rash, and elevated acute phase reactants. SNP array of the patient's genomic DNA revealed a previously unrecognized homozygous deletion of approximately 22.5 Kb. PCR and Sanger sequencing of the borders of the deleted area allowed identification of the breakpoints of the deletion, thus confirming a homozygous 22,216 bp deletion that spans the first four exons of IL1RN. Due to a clinical suspicion of DIRA, anakinra was initiated which resulted in an anaphylactic reaction that triggered desensitization with subsequent marked and sustained clinical and laboratory improvement. We report a novel DIRA-causing homozygous deletion affecting IL1RN in an Indian patient. The mutation likely is a founder mutation; the design of breakpoint-specific primers will enable genetic screening in Indian patients suspected of DIRA. The patient developed anaphylaxis to anakinra, was desensitized, and is in clinical remission on continued treatment.

Fluid-chemical evidence for one billion years of fluid flow through Mesoproterozoic deep-water carbonate mounds (Nanisivik zinc district, Nunavut)

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Hahn, K. E.; Turner, E. C.; Kontak, D. J.; Fayek, M.

2018-02-01

Ancient carbonate rocks commonly contain numerous post-depositional phases (carbonate minerals; quartz) recording successive diagenetic events that can be deciphered and tied to known or inferred geological events using a multi-pronged in situ analytical protocol. The framework voids of large, deep-water microbial carbonate seep-mounds in Arctic Canada (Mesoproterozoic Ikpiarjuk Formation) contain multiple generations of synsedimentary and late cement. An in situ analytical study of the post-seafloor cements used optical and cathodoluminescence petrography, SEM-EDS analysis, fluid inclusion (FI) microthermometry and evaporate mound analysis, LA-ICP-MS analysis, and SIMS δ18O to decipher the mounds' long-term diagenetic history. The six void-filling late cements include, in paragenetic order: inclusion-rich euhedral dolomite (ED), finely crystalline clear dolomite (FCD), hematite-bearing dolomite (HD), coarsely crystalline clear dolomite (CCD), quartz (Q), replacive calcite (RC) and late calcite (LC). Based on the combined analytical results, the following fluid-flow history is defined: (1) ED precipitation by autocementation during shallow burial (fluid 1; Mesoproterozoic); (2) progressive mixing of Ca-rich hydrothermal fluid with the connate fluid, resulting in precipitation of FCD followed by HD (fluid 2; also Mesoproterozoic); (3) precipitation of hydrothermal dolomite (CCD) from high-Ca and K-rich fluids (fluid 3; possibly Mesoproterozoic, but timing unclear); (4) hydrothermal Q precipitation (fluid 4; timing unclear), and (5) RC and LC precipitation from a meteoric-derived water (fluid 5) in or since the Mesozoic. Fluids associated with FCD, HD, and CCD may have been mobilised during deposition of the upper Bylot Supergroup; this time interval was the most tectonically active episode in the region's Mesoproterozoic to Recent history. The entire history of intermittent fluid migration and cement precipitation recorded in seemingly unimportant void

Fluorescence in situ hybridization evaluation of chromosome deletion patterns in prostate cancer.

Science.gov (United States)

Huang, S F; Xiao, S; Renshaw, A A; Loughlin, K R; Hudson, T J; Fletcher, J A

1996-11-01

Various nonrandom chromosomal aberrations have been identified in prostate carcinoma. These aberrations include deletions of several chromosome regions, particularly the chromosome 8 short arm. Large-scale numerical aberrations, reflected in aberrant DNA ploidy, are also found in a minority of cases. However, it is unclear whether prostate carcinomas contain aberrations of certain chromosome regions that are deleted frequently in other common types of cancer. In this study, we performed dual-color fluorescence in situ hybridization on intact nuclei from touch preparations of 16 prostate cancers. Chromosome copy number was determined using pericentromeric probes, whereas potential chromosome arm deletions were evaluated using yeast artificial chromosome (YAC) and P1 probes. Two YAC probes targeted chromosome 8 short arm regions known to be deleted frequently in prostate cancer. Other YACs and P1s were for chromosome regions, including 1p22, 3p14, 6q21, 9p21, and 22q12, that are deletion targets in a variety of cancers although not extensively studied in prostate cancer. Hybridization efficiencies and signal intensities were excellent for both repeat sequence (alpha-satellite) and single, copy (YAC and P1) fluorescence in situ hybridization probes. Of 16 prostate cancers, 11 had clonal aberrations of 1 or more of the 13 chromosome regions evaluated, and 10 cases (62.5%) had 8p deletions, including 4 cases with 8p deletion in virtually all cells and aneuploidy in only a subset of those deleted cells. Deletions at 3p14, 6q21, and 22q12 were identified in 2, 1, and 1 case, respectively, and each of those cases had a similarly sized cell population with 8p deletion. These studies confirm 8p deletion in the majority of prostate carcinomas. 8p deletions appear to be early events in prostate tumorigenesis, often antedating aneuploidy. Fluorescence in situ hybridization strategies incorporating pericentromeric and single-copy regional chromosome probes offer a powerful and

[Mitochondrial DNA4568 deletions in guinea-pig associated with presbycusis].

Science.gov (United States)

Wei, Xue-mei; Yang, Yuan; Liang, Chuang-yu; Zheng, Zhong

2006-12-01

To determine weather or not the mtDNA(4568) deletions in guinea-pig contribute to the development of presbycusis. Forty-four guinea-pigs were divided into 2 groups: group A (young control group, normal hearing, 22 guineas) and group B (aged group). The group B was subdivided into group B(1) (old normal hearing, 6 guineas) and group B(2) (old hearing loss, 16 guineas). First the guineas were tested by auditory brainstem response (ABR), and then the Cortis's tissues, auditory nerve tissues, brain and blood were harvested and the total DNA was extracted. The mtDNA(4568) deletion was analyzed by PCR. Hearing loss was occurred with age. The mtDNA(4568) deletion incidence of aged group in all tissues was significant higher than that of young control group (Ppresbycusis (B(2) group) were significant higher than that of aged normal hearing group (B(1) group) (Ppresbycusis and aged normal hearing group (P> 0.05). mtDNA(4568) deletion of guinea-pig possibly contributes to aging and mtDNA(4568) deletion in Cortis's and auditory nerve tissues of guinea-pig may be associated with presbycusis. There is no enough evidence to prove that the mtDNA(4568) deletions in brain and blood are related with presbycusis.

Impacts from Partial Removal of Decommissioned Oil and Gas Platforms on Fish Biomass and Production on the Remaining Platform Structure and Surrounding Shell Mounds.

Science.gov (United States)

Claisse, Jeremy T; Pondella, Daniel J; Love, Milton; Zahn, Laurel A; Williams, Chelsea M; Bull, Ann S

2015-01-01

When oil and gas platforms become obsolete they go through a decommissioning process. This may include partial removal (from the surface to 26 m depth) or complete removal of the platform structure. While complete removal would likely eliminate most of the existing fish biomass and associated secondary production, we find that the potential impacts of partial removal would likely be limited on all but one platform off the coast of California. On average 80% of fish biomass and 86% of secondary fish production would be retained after partial removal, with above 90% retention expected for both metrics on many platforms. Partial removal would likely result in the loss of fish biomass and production for species typically found residing in the shallow portions of the platform structure. However, these fishes generally represent a small proportion of the fishes associated with these platforms. More characteristic of platform fauna are the primarily deeper-dwelling rockfishes (genus Sebastes). "Shell mounds" are biogenic reefs that surround some of these platforms resulting from an accumulation of mollusk shells that have fallen from the shallow areas of the platforms mostly above the depth of partial removal. We found that shell mounds are moderately productive fish habitats, similar to or greater than natural rocky reefs in the region at comparable depths. The complexity and areal extent of these biogenic habitats, and the associated fish biomass and production, will likely be reduced after either partial or complete platform removal. Habitat augmentation by placing the partially removed platform superstructure or some other additional habitat enrichment material (e.g., rock boulders) on the seafloor adjacent to the base of partially removed platforms provides additional options to enhance fish production, potentially mitigating reductions in shell mound habitat.

Impacts from Partial Removal of Decommissioned Oil and Gas Platforms on Fish Biomass and Production on the Remaining Platform Structure and Surrounding Shell Mounds.

Directory of Open Access Journals (Sweden)

Jeremy T Claisse

Full Text Available When oil and gas platforms become obsolete they go through a decommissioning process. This may include partial removal (from the surface to 26 m depth or complete removal of the platform structure. While complete removal would likely eliminate most of the existing fish biomass and associated secondary production, we find that the potential impacts of partial removal would likely be limited on all but one platform off the coast of California. On average 80% of fish biomass and 86% of secondary fish production would be retained after partial removal, with above 90% retention expected for both metrics on many platforms. Partial removal would likely result in the loss of fish biomass and production for species typically found residing in the shallow portions of the platform structure. However, these fishes generally represent a small proportion of the fishes associated with these platforms. More characteristic of platform fauna are the primarily deeper-dwelling rockfishes (genus Sebastes. "Shell mounds" are biogenic reefs that surround some of these platforms resulting from an accumulation of mollusk shells that have fallen from the shallow areas of the platforms mostly above the depth of partial removal. We found that shell mounds are moderately productive fish habitats, similar to or greater than natural rocky reefs in the region at comparable depths. The complexity and areal extent of these biogenic habitats, and the associated fish biomass and production, will likely be reduced after either partial or complete platform removal. Habitat augmentation by placing the partially removed platform superstructure or some other additional habitat enrichment material (e.g., rock boulders on the seafloor adjacent to the base of partially removed platforms provides additional options to enhance fish production, potentially mitigating reductions in shell mound habitat.

14 CFR 1206.202 - Deletion of segregable portions of a record.

Science.gov (United States)

2010-01-01

... 14 Aeronautics and Space 5 2010-01-01 2010-01-01 false Deletion of segregable portions of a record... AVAILABILITY OF AGENCY RECORDS TO MEMBERS OF THE PUBLIC Records Available § 1206.202 Deletion of segregable... that indication would harm an interest protected by the exemption in Subpart 3 under which the deletion...

TTY2 genes deletions as genetic risk factor of male infertility.

Science.gov (United States)

Shaveisi-Zadeh, F; Alibakhshi, R; Asgari, R; Rostami-Far, Z; Bakhtiari, M; Abdi, H; Movafagh, A; Mirfakhraie, R

2017-02-28

Y chromosome has a number of genes that are expressed in testis and have a role in spermatogenesis. TTY2L12A and TTY2L2A are the members of testis transcript Y2 (TTY2) that are Y linked multi-copy gene families, located on Yp11 and Yq11 loci respectively. The aim of this study was to investigate frequency of TTY2L12A and TTY2L2A deletions in azoospermic patients compared with fertile males. This study was performed on 45 infertile males with idiopathic azoospermia without any AZF micro deletions (group A), 33 infertile males with azoospermia which do not screened for AZF micro deletions (group B) and 65 fertile males (group C), from October 2013 to April 2015 in west of Iran. Polymerase chain reaction (PCR) method was used for detection of TTY2L12A and TTY2L2A gene deletions in studied groups. No deletions were detected in normal fertile males of group C. 1 out of 45 azoospermic males of group A (2.22%) and 3 out of 33 azoospermic males of group B (9.09%) had TTY2L2A deletion (p= 0.409 and p= 0.036 respectively), also 1 out of 45 azoospermic males of group A (2.22%) and 4 out of 33 azoospermic males of group B (12.12%) had TTY2L12A deletion (p= 0.409 and p= 0.011 respectively).  None of azoospermic males in Group A and B had deletions in both genes. Our data showed significant correlation between non-obstructive azoospermia and TTY2L12A and TTY2L2A deletions. Thus, it seems that TTY2L12A and TTY2L2A deletions can consider as one of the genetic risk factors for non-obstructive azoospermia.

Partial USH2A deletions contribute to Usher syndrome in Denmark

DEFF Research Database (Denmark)

Dad, Shzeena; Rendtorff, Nanna Dahl; Kann, Erik

2015-01-01

deletions identified in USH2A. Our results suggest that USH2 is caused by USH2A exon deletions in a small fraction of the patients, whereas deletions or duplications in PCDH15 might be rare in Danish Usher patients.European Journal of Human Genetics advance online publication, 25 March 2015; doi:10.1038...

Temporal Characterization of Hydrates System Dynamics beneath Seafloor Mounds. Integrating Time-Lapse Electrical Resistivity Methods and In Situ Observations of Multiple Oceanographic Parameters

Energy Technology Data Exchange (ETDEWEB)

Lutken, Carol [Univ. of Mississippi, Oxford, MS (United States); Macelloni, Leonardo [Univ. of Mississippi, Oxford, MS (United States); D' Emidio, Marco [Univ. of Mississippi, Oxford, MS (United States); Dunbar, John [Univ. of Mississippi, Oxford, MS (United States); Higley, Paul [Univ. of Mississippi, Oxford, MS (United States)

2015-01-31

This study was designed to investigate temporal variations in hydrate system dynamics by measuring changes in volumes of hydrate beneath hydrate-bearing mounds on the continental slope of the northern Gulf of Mexico, the landward extreme of hydrate occurrence in this region. Direct Current Resistivity (DCR) measurements were made contemporaneously with measurements of oceanographic parameters at Woolsey Mound, a carbonate-hydrate complex on the mid-continental slope, where formation and dissociation of hydrates are most vulnerable to variations in oceanographic parameters affected by climate change, and where changes in hydrate stability can readily translate to loss of seafloor stability, impacts to benthic ecosystems, and venting of greenhouse gases to the water-column, and eventually, the atmosphere. We focused our study on hydrate within seafloor mounds because the structurally-focused methane flux at these sites likely causes hydrate formation and dissociation processes to occur at higher rates than at sites where the methane flux is less concentrated and we wanted to maximize our chances of witnessing association/dissociation of hydrates. We selected a particularly well-studied hydrate-bearing seafloor mound near the landward extent of the hydrate stability zone, Woolsey Mound (MC118). This mid-slope site has been studied extensively and the project was able to leverage considerable resources from the team’s research experience at MC118. The site exhibits seafloor features associated with gas expulsion, hydrates have been documented at the seafloor, and changes in the outcropping hydrates have been documented, photographically, to have occurred over a period of months. We conducted observatory-based, in situ measurements to 1) characterize, geophysically, the sub-bottom distribution of hydrate and its temporal variability, and 2) contemporaneously record relevant environmental parameters (temperature, pressure, salinity, turbidity, bottom currents) to

A Rare Syndrome of Deletion in 2 Siblings

Directory of Open Access Journals (Sweden)

Aravindhan Veerapandiyan MBBS

2017-08-01

Full Text Available The Glutamate receptor, ionotropic, delta 2 gene codes for an ionotropic glutamate delta-2 receptor, which is selectively expressed in cerebellar Purkinje cells, and facilitates cerebellar synapse organization and transmission. The phenotype associated with the deletion of Glutamate receptor, ionotropic, delta 2 gene in humans was initially defined in 2013. In this case report, the authors describe 2 brothers who presented with developmental delay, tonic upward gaze, nystagmus, oculomotor apraxia, hypotonia, hyperreflexia, and ataxia. They were found to have a homozygous intragenic deletion within the Glutamate receptor, ionotropic, delta 2 gene at exon 2. Our patients serve as an addition to the literature of previously reported children with this rare clinical syndrome associated with Glutamate receptor, ionotropic, delta 2 deletion.

10 CFR 9.19 - Segregation of exempt information and deletion of identifying details.

Science.gov (United States)

2010-01-01

... 10 Energy 1 2010-01-01 2010-01-01 false Segregation of exempt information and deletion of... Information Act Regulations § 9.19 Segregation of exempt information and deletion of identifying details. (a... deletions are made from parts of the record by computer, the amount of information deleted will be indicated...

Multiple Patterns of FHIT Gene Homozygous Deletion in Egyptian Breast Cancer Patients

International Nuclear Information System (INIS)

Ismail, H.M.S.; Zakhary, N.I.; Medhat, A.M.; Karim, A.M.

2011-01-01

Fragile histidine triad (FHIT) gene encodes a putative tumour suppressor protein. Loss of Fhit protein in cancer is attributed to different genetic alterations that affect the FHIT gene structure. In this study, we investigated the pattern of homozygous deletion that target the FHIT gene exons 3 to 9 genomic structure in Egyptian breast cancer patients. We have found that 65% (40 out of 62) of the cases exhibited homozygous deletion in at least one FHIT exon. The incidence of homozygous deletion was not associated with patients clinico pathological parameters including patients age, tumour grade, tumour type, and lymph node involvement. Using correlation analysis, we have observed a strong correlation between homozygous deletions of exon 3 and exon 4 (P<0.0001). Deletions in exon 5 were positively correlated with deletions in exon 7 (P<0.0001), Exon 8 (P<0.027), and exon 9 (P=0.04). Additionally, a strong correlation was observed between exons 8 and exon 9 (P<0.0001).We conclude that FHIT gene exons are homozygously deleted at high frequency in Egyptian women population diagnosed with breast cancer. Three different patterns of homozygous deletion were observed in this population indicating different mechanisms of targeting FHIT gene genomic structure.

Novel large-range mitochondrial DNA deletions and fatal multisystemic disorder with prominent hepatopathy

International Nuclear Information System (INIS)

Bianchi, Marzia; Rizza, Teresa; Verrigni, Daniela; Martinelli, Diego; Tozzi, Giulia; Torraco, Alessandra; Piemonte, Fiorella; Dionisi-Vici, Carlo; Nobili, Valerio; Francalanci, Paola; Boldrini, Renata; Callea, Francesco; Santorelli, Filippo Maria; Bertini, Enrico

2011-01-01

Highlights: ► Expanded array of mtDNA deletions. ► Pearson syndrome with prominent hepatopathy associated with single mtDNA deletions. ► Detection of deletions in fibroblasts and blood avoids muscle and liver biopsy. ► Look for mtDNA deletions before to study nuclear genes related to mtDNA depletion. -- Abstract: Hepatic involvement in mitochondrial cytopathies rarely manifests in adulthood, but is a common feature in children. Multiple OXPHOS enzyme defects in children with liver involvement are often associated with dramatically reduced amounts of mtDNA. We investigated two novel large scale deletions in two infants with a multisystem disorder and prominent hepatopathy. Amount of mtDNA deletions and protein content were measured in different post-mortem tissues. The highest levels of deleted mtDNA were in liver, kidney, pancreas of both patients. Moreover, mtDNA deletions were detected in cultured skin fibroblasts in both patients and in blood of one during life. Biochemical analysis showed impairment of mainly complex I enzyme activity. Patients manifesting multisystem disorders in childhood may harbour rare mtDNA deletions in multiple tissues. For these patients, less invasive blood specimens or cultured fibroblasts can be used for molecular diagnosis. Our data further expand the array of deletions in the mitochondrial genomes in association with liver failure. Thus analysis of mtDNA should be considered in the diagnosis of childhood-onset hepatopathies.

Detection of three-base deletion by exciplex formation with perylene derivatives.

Science.gov (United States)

Kashida, Hiromu; Kondo, Nobuyo; Sekiguchi, Koji; Asanuma, Hiroyuki

2011-06-14

Here, we synthesized fluorescent DNA probes labeled with two perylene derivatives for the detection of a three-base deletion mutant. One such probe discriminated the three-base deletion mutant from the wild-type sequence by exciplex emission, and the deletion mutant was identifiable even by the naked eye. This journal is © The Royal Society of Chemistry 2011

Characterization of novel RS1 exonic deletions in juvenile X-linked retinoschisis.

Science.gov (United States)

D'Souza, Leera; Cukras, Catherine; Antolik, Christian; Craig, Candice; Lee, Ji-Yun; He, Hong; Li, Shibo; Smaoui, Nizar; Hejtmancik, James F; Sieving, Paul A; Wang, Xinjing

2013-01-01

X-linked juvenile retinoschisis (XLRS) is a vitreoretinal dystrophy characterized by schisis (splitting) of the inner layers of the neuroretina. Mutations within the retinoschisis (RS1) gene are responsible for this disease. The mutation spectrum consists of amino acid substitutions, splice site variations, small indels, and larger genomic deletions. Clinically, genomic deletions are rarely reported. Here, we characterize two novel full exonic deletions: one encompassing exon 1 and the other spanning exons 4-5 of the RS1 gene. We also report the clinical findings in these patients with XLRS with two different exonic deletions. Unrelated XLRS men and boys and their mothers (if available) were enrolled for molecular genetics evaluation. The patients also underwent ophthalmologic examination and in some cases electroretinogram (ERG) recording. All the exons and the flanking intronic regions of the RS1 gene were analyzed with direct sequencing. Two patients with exonic deletions were further evaluated with array comparative genomic hybridization to define the scope of the genomic aberrations. After the deleted genomic region was identified, primer walking followed by direct sequencing was used to determine the exact breakpoints. Two novel exonic deletions of the RS1 gene were identified: one including exon 1 and the other spanning exons 4 and 5. The exon 1 deletion extends from the 5' region of the RS1 gene (including the promoter) through intron 1 (c.(-35)-1723_c.51+2664del4472). The exon 4-5 deletion spans introns 3 to intron 5 (c.185-1020_c.522+1844del5764). Here we report two novel exonic deletions within the RS1 gene locus. We have also described the clinical presentations and hypothesized the genomic mechanisms underlying these schisis phenotypes.

Novel large-range mitochondrial DNA deletions and fatal multisystemic disorder with prominent hepatopathy

Energy Technology Data Exchange (ETDEWEB)

Bianchi, Marzia; Rizza, Teresa; Verrigni, Daniela [Unit of Molecular Medicine for Neuromuscular and Neurodegenerative Diseases, ' Bambino Gesu' Children' s Hospital, Rome (Italy); Martinelli, Diego [Division of Metabolism, ' Bambino Gesu' Children' s Hospital, Rome (Italy); Tozzi, Giulia; Torraco, Alessandra; Piemonte, Fiorella [Unit of Molecular Medicine for Neuromuscular and Neurodegenerative Diseases, ' Bambino Gesu' Children' s Hospital, Rome (Italy); Dionisi-Vici, Carlo [Division of Metabolism, ' Bambino Gesu' Children' s Hospital, Rome (Italy); Nobili, Valerio [Gastroenterology and Liver Unit, ' Bambino Gesu' Children' s Hospital, Rome (Italy); Francalanci, Paola; Boldrini, Renata; Callea, Francesco [Dept. Pathology, ' Bambino Gesu' Children' s Hospital, Rome (Italy); Santorelli, Filippo Maria [UOC Neurogenetica e Malattie Neuromuscolari, Fondazione Stella Maris, Pisa (Italy); Bertini, Enrico [Unit of Molecular Medicine for Neuromuscular and Neurodegenerative Diseases, ' Bambino Gesu' Children' s Hospital, Rome (Italy); and others

2011-11-18

Highlights: Black-Right-Pointing-Pointer Expanded array of mtDNA deletions. Black-Right-Pointing-Pointer Pearson syndrome with prominent hepatopathy associated with single mtDNA deletions. Black-Right-Pointing-Pointer Detection of deletions in fibroblasts and blood avoids muscle and liver biopsy. Black-Right-Pointing-Pointer Look for mtDNA deletions before to study nuclear genes related to mtDNA depletion. -- Abstract: Hepatic involvement in mitochondrial cytopathies rarely manifests in adulthood, but is a common feature in children. Multiple OXPHOS enzyme defects in children with liver involvement are often associated with dramatically reduced amounts of mtDNA. We investigated two novel large scale deletions in two infants with a multisystem disorder and prominent hepatopathy. Amount of mtDNA deletions and protein content were measured in different post-mortem tissues. The highest levels of deleted mtDNA were in liver, kidney, pancreas of both patients. Moreover, mtDNA deletions were detected in cultured skin fibroblasts in both patients and in blood of one during life. Biochemical analysis showed impairment of mainly complex I enzyme activity. Patients manifesting multisystem disorders in childhood may harbour rare mtDNA deletions in multiple tissues. For these patients, less invasive blood specimens or cultured fibroblasts can be used for molecular diagnosis. Our data further expand the array of deletions in the mitochondrial genomes in association with liver failure. Thus analysis of mtDNA should be considered in the diagnosis of childhood-onset hepatopathies.

A local-world node deleting evolving network model

International Nuclear Information System (INIS)

Gu Yuying; Sun Jitao

2008-01-01

A new type network growth rule which comprises node addition with the concept of local-world connectivity and node deleting is studied. A series of theoretical analysis and numerical simulation to the LWD network are conducted in this Letter. Firstly, the degree distribution p(k) of this network changes no longer pure scale free but truncates by an exponential tail and the truncation in p(k) increases as p a decreases. Secondly, the connectivity is tighter, as the local-world size M increases. Thirdly, the average path length L increases and the clustering coefficient decreases as generally node deleting increases. Finally, trends up when the local-world size M increases, so as to k max . Hence, the expanding local-world can compensate the infection of the node deleting

A local-world node deleting evolving network model

Energy Technology Data Exchange (ETDEWEB)

Gu Yuying [Department of Mathematics, Tongji University, Shanghai 200092 (China); Sun Jitao [Department of Mathematics, Tongji University, Shanghai 200092 (China)], E-mail: sunjt@sh163.net

2008-06-16

A new type network growth rule which comprises node addition with the concept of local-world connectivity and node deleting is studied. A series of theoretical analysis and numerical simulation to the LWD network are conducted in this Letter. Firstly, the degree distribution p(k) of this network changes no longer pure scale free but truncates by an exponential tail and the truncation in p(k) increases as p{sub a} decreases. Secondly, the connectivity is tighter, as the local-world size M increases. Thirdly, the average path length L increases and the clustering coefficient decreases as generally node deleting increases. Finally, trends up when the local-world size M increases, so as to k{sub max}. Hence, the expanding local-world can compensate the infection of the node deleting.

Savannah River Laboratory monthly report: 238Pu fuel form processes

International Nuclear Information System (INIS)

1976-01-01

Progress in the Savannah River 238 Pu Fuel Form Program is discussed. Goals of the Savannah River Laboratory (SRL) program are to provide technical support for the transfer of the 238 Pu fuel form fabrication operations from Mound Laboratory to new facilities being built at the Savannah River Plant (SRP), to provide the technical basis for 238 Pu scrap recovery at SRP, and to assist in sustaining plant operations. During the period it was found that the density of hot-pressed 238 PuO 2 pellets decreased as the particle size of ball-milled powder decreased;the surface area of calcined 238 PuO 2 powder increased with increasing precipitation temperature and may be related to the variation in ball-milling response observed among different H Area B-Line batches; calcined PuO 2 produced by Pu(III) reverse-strike precipitation was directly fabricated into a pellet without ball milling, slugging, or sharding. The pellet had good appearance with acceptable density and dimensional stability, and heat transfer measurements and calculations showed that the use of hollow aluminum sleeves in the plutonium fuel fabrication (PuFF) storage vault reduced the temperature of shipping cans to 170 0 C and will reduce the temperature at the center of pure plutonium oxide (PPO) spheres to 580 0 C

An aerial radiological survey of the EG ampersand G Mound Applied Technologies and surrounding area, Miamisburg, Ohio

International Nuclear Information System (INIS)

1992-11-01

An aerial radiological survey was conducted over EG ampersand G Mound Applied Technologies, Miamisburg, Ohio, during the period of June 9--24, 1989. The purpose of the 41-square-kilometer (16-square-mile) survey was to document the terrestrial gamma environment of the plant and surrounding area. In addition, ground-based exposure rate measurements and soil samples were obtained to support the aerial data. An exposure rate contour map at 1 meter above ground level was.constructed from the gamma data and overlaid on an aerial photograph and map of the area. Exposure rates measured in the area typically ranged from 9 to 11 microroentgens per hour (μR/h)

Brand deletion: How the decision-making approach affects deletion success

OpenAIRE

Víctor Temprano-García; Ana Isabel Rodríguez-Escudero; Javier Rodríguez-Pinto

2018-01-01

Literature on brand deletion (BD), a critical and topical decision within a firm's marketing strategy, is extremely scarce. The present research is concerned with the decision-making process and examines the effect on BD success of three different approaches to decision-making – rational, intuitive and political – and of the interaction between the rational and political approaches. The moderating effect of the type of BD – i.e., total brand killing or disposal vs. brand name change – is also...

Dual entanglement measures based on no local cloning and no local deleting

International Nuclear Information System (INIS)

Horodecki, Michal; Sen, Aditi; Sen, Ujjwal

2004-01-01

The impossibility of cloning and deleting of unknown states constitute important restrictions on processing of information in the quantum world. On the other hand, a known quantum state can always be cloned or deleted. However, if we restrict the class of allowed operations, there will arise restrictions on the ability of cloning and deleting machines. We have shown that cloning and deleting of known states is in general not possible by local operations. This impossibility hints at quantum correlation in the state. We propose dual measures of quantum correlation based on the dual restrictions of no local cloning and no local deleting. The measures are relative entropy distances of the desired states in a (generally impossible) perfect local cloning or local deleting process from the best approximate state that is actually obtained by imperfect local cloning or deleting machines. Just like the dual measures of entanglement cost and distillable entanglement, the proposed measures are based on important processes in quantum information. We discuss their properties. For the case of pure states, estimations of these two measures are also provided. Interestingly, the entanglement of cloning for a maximally entangled state of two two-level systems is not unity

Origin of carbonate concretions from mud mounds in the Gulf of Cadiz (SW Iberian Peninsula); Origen de las concreciones carbonatadas de los monticulos de fango en el Golfo de Cadiz (SO Peninsula Iberica)

Energy Technology Data Exchange (ETDEWEB)

Rejas, M.; Taberner, C.; Pueyo, J. J.; Giralt, S.; Mata, M. P.; Gibert, J. M. de; Diaz del Rio, V.

2015-07-01

The Gulf of Cadiz displays a number of structures that are associated with fluid circulation (mud volcanoes, mud mounds and pockmarks).This area has been used as natural laboratory for the sedimentological, bio- logical and biogeochemical studies of these environments. Analysis of the associated authigenic carbonates has been widely used as a proxy to yield insights into the circulation and chemical composition of these flu- ids. A study of carbonate concretions from the Iberico, Cornide and Arcos mud mounds in the Diasom Field was undertaken to better understand the origin and type of fluids from which these concretions precipitated. The concretions display varying morphologies, some of which correspond to bioturbation traces. X-ray dif- fractions revealed that these carbonate concretions are mainly composed of dolomite, Fe-rich dolomite, high magnesium calcite (HMC) and ankerite. The δ{sup 1}3 C values of carbonate minerals ranged between -48.3 and-10.9 V-PDB, which suggests that the main processes involved in their genesis are organic matter oxidation, bac- terial sulphate-reduction (BSR) and anaerobic methane oxidation (AOM). The origin of the methane is main- ly thermogenic, and only few concretions yielded δ{sup 1}3C values lower than -40 V-PDB, suggesting oxidation of microbial methane. Fluids involved in the carbonate precipitation are interpreted as being related to gas hydrate destabilisation (δ{sup 18}O fluid-V-SMOW values higher than +2%) and, to a lesser extent, modified seawater enriched in {sup 18}O due to rock-water interaction. Nevertheless, the highest δ{sup 1}8O fluid-V-SMOW values suggest that the influence of other deep-seated fluids due to clay-mineral dehydration cannot be ruled out. (Author)

24 CFR 990.155 - Addition and deletion of units.

Science.gov (United States)

2010-04-01

... 24 Housing and Urban Development 4 2010-04-01 2010-04-01 false Addition and deletion of units. 990.155 Section 990.155 Housing and Urban Development Regulations Relating to Housing and Urban...; Computation of Eligible Unit Months § 990.155 Addition and deletion of units. (a) Changes in public housing...

Discrimination of Deletion and Duplication Subtypes of the Deleted in Azoospermia Gene Family in the Context of Frequent Interloci Gene Conversion

Science.gov (United States)

Vaszkó, Tibor; Papp, János; Krausz, Csilla; Casamonti, Elena; Géczi, Lajos; Olah, Edith

2016-01-01

Due to its palindromic setup, AZFc (Azoospermia Factor c) region of chromosome Y is one of the most unstable regions of the human genome. It contains eight gene families expressed mainly in the testes. Several types of rearrangement resulting in changes in the cumulative copy number of the gene families were reported to be associated with diseases such as male infertility and testicular germ cell tumors. The best studied AZFc rearrangement is gr/gr deletion. Its carriers show widespread phenotypic variation from azoospermia to normospermia. This phenomenon was initially attributed to different gr/gr subtypes that would eliminate distinct members of the affected gene families. However, studies conducted to confirm this hypothesis have brought controversial results, perhaps, in part, due to the shortcomings of the utilized subtyping methodology. This proof-of-concept paper is meant to introduce here a novel method aimed at subtyping AZFc rearrangements. It is able to differentiate the partial deletion and partial duplication subtypes of the Deleted in Azoospermia (DAZ) gene family. The keystone of the method is the determination of the copy number of the gene family member-specific variant(s) in a series of sequence family variant (SFV) positions. Most importantly, we present a novel approach for the correct interpretation of the variant copy number data to determine the copy number of the individual DAZ family members in the context of frequent interloci gene conversion.Besides DAZ1/DAZ2 and DAZ3/DAZ4 deletions, not yet described rearrangements such as DAZ2/DAZ4 deletion and three duplication subtypes were also found by the utilization of the novel approach. A striking feature is the extremely high concordance among the individual data pointing to a certain type of rearrangement. In addition to being able to identify DAZ deletion subtypes more reliably than the methods used previously, this approach is the first that can discriminate DAZ duplication subtypes as well

Offshore oceanographic and environmental monitoring services for the Strategic Petroleum Reserve. Volume I. Appendices. Annual report for the Bryan Mound Site, September 1982-August 1983

Energy Technology Data Exchange (ETDEWEB)

None

1984-03-01

The Department of Energy's Strategic Petroleum Reserve Program began leaching the Bryan Mound salt dome and discharging brine into the coastal waters offshore of Freeport, Texas on March 10, 1980. This report describes the findings of a team of Texas A and M University scientists and engineers who have conducted a study to evaluate the effects of the Bryan Mound brine discharge on the marine environment. The study addresses the areas of physical oceanography, analysis of the discharge plume, water and sediment quality, nekton, benthos and data management. It focuses on the period from September 1982 through August 1983. The ambient physical environment and its temporal and spatial variability were studied by means of continuously recording in situ current/conductivitiy/temperature meters and twelve, one-day synoptic hydrographic cruises. The quarterly water and sediment quality data show a small increase in salinity, sodium and chloride ions occurs in the bottom waters and sediment pore waters near the diffuser relative to those values measured at stations farther away. Data from the brine plume study for this reporting study show the largest areal extent within the +1 o/oo above ambient salinity contour was 40.0 km/sup 2/ which occurred on August 11, 1983. It appears that brine disposal at Bryan Mound has had neglible if any influence on the nekton community surrounding the diffuser. The benthic quarterly data from 26 stations, including 7 collections made after the diffuser outflow rate was increased to 1,000,000 barrels/day, show the total numbers of species at the diffuser station were higher than most other nearfield stations as well as many farfield stations in both the pre- and post-1,000,000 barrels/day brine flow periods. 138 references, 175 figures, 53 tables.

High Intensity Source Laboratory (HISL)

International Nuclear Information System (INIS)

1992-01-01

The High Intensity Source Laboratory (HISL) is a laboratory facility operated for the US Department of Energy (DOE) by EG ampersand G, Energy Measurements (EG ampersand G/EM). This document is intended as an overview -- primarily for external users -- of the general purposes and capabilities of HISL; numerous technical details are beyond its scope. Moreover, systems at HISL are added, deleted, and modified to suit current needs, and upgraded with continuing development. Consequently, interested parties are invited to contact the HISL manager for detailed, current, technical, and administrative information. The HISL develops and operates pulsed radiation sources with energies, intensities, and pulse widths appropriate for several applications. Principal among these are development, characterization, and calibration of various high-bandwidth radiation detectors and diagnostic systems. Hardness/vulnerability of electronic or other sensitive components to radiation is also tested. In this connection, source development generally focuses on attending (1) the highest possible intensities with (2) reasonably short pulse widths and (3) comprehensive output characterization

Efficient Low-pH Iron Removal by a Microbial Iron Oxide Mound Ecosystem at Scalp Level Run.

Science.gov (United States)

Grettenberger, Christen L; Pearce, Alexandra R; Bibby, Kyle J; Jones, Daniel S; Burgos, William D; Macalady, Jennifer L

2017-04-01

Acid mine drainage (AMD) is a major environmental problem affecting tens of thousands of kilometers of waterways worldwide. Passive bioremediation of AMD relies on microbial communities to oxidize and remove iron from the system; however, iron oxidation rates in AMD environments are highly variable among sites. At Scalp Level Run (Cambria County, PA), first-order iron oxidation rates are 10 times greater than at other coal-associated iron mounds in the Appalachians. We examined the bacterial community at Scalp Level Run to determine whether a unique community is responsible for the rapid iron oxidation rate. Despite strong geochemical gradients, including a >10-fold change in the concentration of ferrous iron from 57.3 mg/liter at the emergence to 2.5 mg/liter at the base of the coal tailings pile, the bacterial community composition was nearly constant with distance from the spring outflow. Scalp Level Run contains many of the same taxa present in other AMD sites, but the community is dominated by two strains of Ferrovum myxofaciens , a species that is associated with high rates of Fe(II) oxidation in laboratory studies. IMPORTANCE Acid mine drainage pollutes more than 19,300 km of rivers and streams and 72,000 ha of lakes worldwide. Remediation is frequently ineffective and costly, upwards of $100 billion globally and nearly $5 billion in Pennsylvania alone. Microbial Fe(II) oxidation is more efficient than abiotic Fe(II) oxidation at low pH (P. C. Singer and W. Stumm, Science 167:1121-1123, 1970, https://doi.org/10.1126/science.167.3921.1121). Therefore, AMD bioremediation could harness microbial Fe(II) oxidation to fuel more-cost-effective treatments. Advances will require a deeper understanding of the ecology of Fe(II)-oxidizing microbial communities and the factors that control their distribution and rates of Fe(II) oxidation. We investigated bacterial communities that inhabit an AMD site with rapid Fe(II) oxidation and found that they were dominated by two

Sequence characterisation of deletion breakpoints in the dystrophin gene by PCR

Energy Technology Data Exchange (ETDEWEB)

Abbs, S.; Sandhu, S.; Bobrow, M. [Guy`s Hospital, London (United Kingdom)

1994-09-01

Partial deletions of the dystrophin gene account for 65% of cases of Duchenne muscular dystrophy. A high proportion of these structural changes are generated by new mutational events, and lie predominantly within two `hotspot` regions, yet the underlying reasons for this are not known. We are characterizing and sequencing the regions surrounding deletion breakpoints in order to: (i) investigate the mechanisms of deletion mutation, and (ii) enable the design of PCR assays to specifically amplify mutant and normal sequences, allowing us to search for the presence of somatic mosaicism in appropriate family members. Using this approach we have been able to demonstrate the presence of somatic mosaicism in a maternal grandfather of a DMD-affected male, deleted for exons 49-50. Three deletions, namely of exons 48-49, 49-50, and 50, have been characterized using a PCR approach that avoids any cloning procedures. Breakpoints were initially localized to within regions of a few kilobases using Southern blot restriction analyses with exon-specific probes and PCR amplification of exonic and intronic loci. Sequencing was performed directly on PCR products: (i) mutant sequences were obtained from long-range or inverse-PCR across the deletion junction fragments, and (ii) normal sequences were obtained from the products of standard PCR, vectorette PCR, or inverse-PCR performed on YACs. Further characterization of intronic sequences will allow us to amplify and sequence across other deletion breakpoints and increase our knowledge of the mechanisms of mutation in the dystophin gene.

Thorough analysis of unorthodox ABO deletions called by the 1000 Genomes project.

Science.gov (United States)

Möller, M; Hellberg, Å; Olsson, M L

2018-02-01

ABO remains the clinically most important blood group system, but despite earlier extensive research, significant findings are still being made. The vast majority of catalogued ABO null alleles are based on the c.261delG polymorphism. Apart from c.802G>A, other mechanisms for O alleles are rare. While analysing the data set from the 1000 Genomes (1000G) project, we encountered two previously uncharacterized deletions, which needed further exploration. The Erythrogene database, complemented with bioinformatics software, was used to analyse ABO in 2504 individuals from 1000G. DNA samples from selected 1000G donors and African blood donors were examined by allele-specific PCR and Sanger sequencing to characterize predicted deletions. A 5821-bp deletion encompassing exons 5-7 was called in twenty 1000G individuals, predominantly Africans. This allele was confirmed and its exact deletion point defined by bioinformatic analyses and in vitro experiments. A PCR assay was developed, and screening of African samples revealed three donors heterozygous for this deletion, which was thereby phenotypically established as an O allele. Analysis of upstream genetic markers indicated an ancestral origin from ABO*O.01.02. We estimate this deletion as the 3rd most common mechanism behind O alleles. A 24-bp deletion was called in nine individuals and showed greater diversity regarding ethnic distribution and allelic background. It could neither be confirmed by in silico nor in vitro experiments. A previously uncharacterized ABO deletion among Africans was comprehensively mapped and a genotyping strategy devised. The false prediction of another deletion emphasizes the need for cautious interpretation of NGS data and calls for strict validation routines. © 2017 International Society of Blood Transfusion.

Do mtDNA Deletions Play a Role in the Development of Nasal Polyposis?

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Arzu Tatar

2014-04-01

Full Text Available Objective:Nasal polyposis (NP is an inflammatory disease of the nasal mucosa and paranasal sinuses. Mitochondria are the cellular organelles which produce cellular energy by Oxidative Phosphorylation (OXPHOS, and they have own inheritance material, mtDNA. mtDNA is affected by reactive oxygen samples (ROS which are produced by both OXPHOS and the inflammatory process. The aim of this study was to investigate the 4977 bp and 7400 bp deletions of mtDNA in nasal polyposis tissue, and to indicate the possible association of mtDNA deletions with NP. Methods:Thirty-three patients, aged 15 to 65 years, with nasal polyposis were selected to be assessed for mitochondrial DNA deletions. The patients with possible mtDNA mutations due to mitochondrial disease, being treated with radiotherapy, of advanced age, with a familiar history, aspirin hypersensitivity, or a history of asthma, were excluded. Polyp excision surgery was applied to the treatment of the NP, and after histopathological diagnosis 1x1 cm of polyp tissue samples were used to isolate mtDNA. The 4977 bp and 7400 bp deletion regions, and two control regions of mtDNA were assessed by using four pairs of primers. DNA extractions from the NP tissues and peripheral blood samples of the patients were made, and then Polymerase Chain Reactions (PCR were made. PCR products were separated in 2% agarose gel.Results:No patient had either the 4977 bp deletion or the 7400 bp deletion in their NP tissue, and neither were these deletions evident in their peripheral blood. Two control sequences, one of them from a non-deleted region, and the other from a possible deletion region, were detected in the NP tissues and peripheral blood of all the patients.Conclusions:We had anticipated that some mtDNA deletion might have occurred in NP tissue due to the increased ROS levels caused by chronic inflammation, but we did not detect any deletion. Probably, the duration of inflammation in NP is insufficient to form mt

Oncolytic Replication of E1b-Deleted Adenoviruses

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Pei-Hsin Cheng

2015-11-01

Full Text Available Various viruses have been studied and developed for oncolytic virotherapies. In virotherapy, a relatively small amount of viruses used in an intratumoral injection preferentially replicate in and lyse cancer cells, leading to the release of amplified viral particles that spread the infection to the surrounding tumor cells and reduce the tumor mass. Adenoviruses (Ads are most commonly used for oncolytic virotherapy due to their infection efficacy, high titer production, safety, easy genetic modification, and well-studied replication characteristics. Ads with deletion of E1b55K preferentially replicate in and destroy cancer cells and have been used in multiple clinical trials. H101, one of the E1b55K-deleted Ads, has been used for the treatment of late-stage cancers as the first approved virotherapy agent. However, the mechanism of selective replication of E1b-deleted Ads in cancer cells is still not well characterized. This review will focus on three potential molecular mechanisms of oncolytic replication of E1b55K-deleted Ads. These mechanisms are based upon the functions of the viral E1B55K protein that are associated with p53 inhibition, late viralmRNAexport, and cell cycle disruption.

The male gametophytic sterility. 1 - Gametic sterilities and deletions in petunia

International Nuclear Information System (INIS)

Cornu, A.; Maizonnier, D.

1982-01-01

Terminal deletions induced by ionizing radiations in Petunia are not sexually transmitted. Cytogenetic study of plants with a heterozygous deletion and their progenies shows that this lack of transmission is accompanied by a gametic semi-sterility due to the fact that gametes carrying the deleted chromosome are not viable. The interest of such a male sterility with a gametophytic determinism for the study of sporophyte-gametophyte relationships is underlined [fr

ABCA7 frameshift deletion associated with Alzheimer disease in African Americans

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Cukier, Holly N.; Kunkle, Brian W.; Vardarajan, Badri N.; Rolati, Sophie; Hamilton-Nelson, Kara L.; Kohli, Martin A.; Whitehead, Patrice L.; Dombroski, Beth A.; Van Booven, Derek; Lang, Rosalyn; Dykxhoorn, Derek M.; Farrer, Lindsay A.; Cuccaro, Michael L.; Vance, Jeffery M.; Gilbert, John R.; Beecham, Gary W.; Martin, Eden R.; Carney, Regina M.; Mayeux, Richard; Schellenberg, Gerard D.; Byrd, Goldie S.; Haines, Jonathan L.

2016-01-01

Objective: To identify a causative variant(s) that may contribute to Alzheimer disease (AD) in African Americans (AA) in the ATP-binding cassette, subfamily A (ABC1), member 7 (ABCA7) gene, a known risk factor for late-onset AD. Methods: Custom capture sequencing was performed on ∼150 kb encompassing ABCA7 in 40 AA cases and 37 AA controls carrying the AA risk allele (rs115550680). Association testing was performed for an ABCA7 deletion identified in large AA data sets (discovery n = 1,068; replication n = 1,749) and whole exome sequencing of Caribbean Hispanic (CH) AD families. Results: A 44-base pair deletion (rs142076058) was identified in all 77 risk genotype carriers, which shows that the deletion is in high linkage disequilibrium with the risk allele. The deletion was assessed in a large data set (531 cases and 527 controls) and, after adjustments for age, sex, and APOE status, was significantly associated with disease (p = 0.0002, odds ratio [OR] = 2.13 [95% confidence interval (CI): 1.42–3.20]). An independent data set replicated the association (447 cases and 880 controls, p = 0.0117, OR = 1.65 [95% CI: 1.12–2.44]), and joint analysis increased the significance (p = 1.414 × 10−5, OR = 1.81 [95% CI: 1.38–2.37]). The deletion is common in AA cases (15.2%) and AA controls (9.74%), but in only 0.12% of our non-Hispanic white cohort. Whole exome sequencing of multiplex, CH families identified the deletion cosegregating with disease in a large sibship. The deleted allele produces a stable, detectable RNA strand and is predicted to result in a frameshift mutation (p.Arg578Alafs) that could interfere with protein function. Conclusions: This common ABCA7 deletion could represent an ethnic-specific pathogenic alteration in AD. PMID:27231719

41 CFR 51-6.8 - Deletion of items from the Procurement List.

Science.gov (United States)

2010-07-01

... 41 Public Contracts and Property Management 1 2010-07-01 2010-07-01 true Deletion of items from...-PROCUREMENT PROCEDURES § 51-6.8 Deletion of items from the Procurement List. (a) When a central nonprofit... shall notify the Committee staff immediately. Before reaching a decision to request a deletion of an...

Interleukin 3 gene is located on human chromosome 5 and is deleted in myeloid leukemias with a deletion of 5q

International Nuclear Information System (INIS)

Le Beau, M.M.; Epstein, N.D.; O'Brien, S.J.; Nienhuis, A.W.; Yang, Y.C.; Clark, S.C.; Rowley, J.D.

1987-01-01

The gene IL-3 encodes interleukin 3, a hematopoietic colony-stimulating factor (CSF) that is capable of supporting the proliferation of a broad range of hematopoietic cell types. By using somatic cell hybrids and in situ chromosomal hybridization, the authors localized this gene to human chromosome 5 at bands q23-31, a chromosomal region that is frequently deleted [del(5q)] in patients with myeloid disorders. By in situ hybridization, IL-3 was found to be deleted in the 5q-chromosome of one patient with refractory anemia who had a del(5)(q15q33.3), of three patients with refractory anemia (two patients) or acute nonlymphocytic leukemia (ANLL) de novo who had a similar distal breakpoint [del(5)(q13q33.3)], and of a fifth patient, with therapy-related ANLL, who had a similar distal breakpoint in band q33[del(5)(q14q33.3)]. Southern blot analysis of somatic cell hybrids retaining the normal or the deleted chromosome 5 from two patients with the refractory anemia 5q- syndrome indicated that IL-3 sequences were absent from the hybrids retaining the deleted chromosome 5 but not from hybrids that had a cytologically normal chromosome 5. Thus, a small segment of chromosome 5 contains IL-3, GM-CSF, CSF-1, and FMS. The findings and earlier results indicating that GM-CSF, CSF-1, and FMS were deleted in the 5q- chromosome, suggest that loss of IL-3 or of other CSF genes may play an important role in the pathogenesis of hematologic disorders associated with a del(5q)

Spontaneous and mutagen-induced deletions: mechanistic studies in Salmonella tester strain TA102

International Nuclear Information System (INIS)

Levin, D.E.; Marnett, L.J.; Ames, B.N.

1984-01-01

Salmonella tester strain TA102 carries the hisG428 ochre mutation on the multicopy plasmid pAQ1. DNA sequence analysis of 45 spontaneous revertants of hisG428 on the chromosome in the presence of pKM101 (strain TA103) indicates that hisG428 revertants fall into three major categories: (i) small, in-frame deletions (3 or 6 base pairs) that remove part or all of the ochre triplet; (ii) base substitution mutations at the ochre site; (iii) extragenic ochre suppressors. Deletion revertants are identified in a simple phenotypic screen by their resistance to the inhibitory histidine analog thiazolealanine, which feedback inhibits the wild-type hisG enzyme but not the enzyme resulting from the deletions. The effect of various genetic backgrounds on the generation of spontaneous deletion revertants was examined. The presence of a uvrB mutation or a recA mutation suppressed the generation of spontaneous deletion revertants to approximately 1/2.5. When hisG428 was in multiple copies on pAQ1, the frequency of spontaneous deletion revertants increased by 40-fold, which is the approximate copy number of pAQ1. Mutagenic agents that induce single-strand breaks in DNA (e.g., x-rays, bleomycin, and nalidixic acid) induced deletion revertants in TA102. These agents induced deletion revertants only in hisG428 on pAQ1 and only in the presence of pKM101. Deletion revertants were not induced by frameshift mutagens (i.e., ICR-191 and 9aminoacridine). These results indicate that different pathways exist for the generation of spontaneous and mutagen-induced deletion revertants of hisG428. 41 references, 2 figures, 3 tables

Deletions of the hypervariable region (HVR) in open reading frame 1 of hepatitis E virus do not abolish virus infectivity: evidence for attenuation of HVR deletion mutants in vivo.

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Pudupakam, R S; Huang, Y W; Opriessnig, T; Halbur, P G; Pierson, F W; Meng, X J

2009-01-01

Hepatitis E virus (HEV) is an important human pathogen, although little is known about its biology and replication. Comparative sequence analysis revealed a hypervariable region (HVR) with extensive sequence variations in open reading frame 1 of HEV. To elucidate the role of the HVR in HEV replication, we first constructed two HVR deletion mutants, hHVRd1 and hHVRd2, with in-frame deletion of amino acids (aa) 711 to 777 and 747 to 761 in the HVR of a genotype 1 human HEV replicon. Evidence of HEV replication was detected in Huh7 cells transfected with RNA transcripts from mutant hHVRd2, as evidenced by expression of enhanced green fluorescent protein. To confirm the in vitro results, we constructed three avian HEV mutants with various HVR deletions: mutants aHVRd1, with deletion of aa 557 to 585 (Delta557-585); aHVRd2 (Delta612-641); and aHVRd3 (Delta557-641). Chickens intrahepatically inoculated with capped RNA transcripts from mutants aHVRd1 and aHVRd2 developed active viral infection, as evidenced by seroconversion, viremia, and fecal virus shedding, although mutant aHVRd3, with complete HVR deletion, was apparently attenuated in chickens. To further verify the results, we constructed four additional HVR deletion mutants using the genotype 3 swine HEV as the backbone. Mutants sHVRd2 (Delta722-781), sHVRd3 (Delta735-765), and sHVRd4 (Delta712-765) were shown to tolerate deletions and were infectious in pigs intrahepatically inoculated with capped RNA transcripts from the mutants, whereas mutant sHVRd1 (Delta712-790), with a nearly complete HVR deletion, exhibited an attenuation phenotype in infected pigs. The data from these studies indicate that deletions in HVR do not abolish HEV infectivity in vitro or in vivo, although evidence for attenuation was observed for HEV mutants with a larger or nearly complete HVR deletion.

An environment-mediated quantum deleter

International Nuclear Information System (INIS)

Srikanth, R.; Banerjee, Subhashish

2007-01-01

Environment-induced decoherence presents a great challenge to realizing a quantum computer. We point out the somewhat surprising fact that decoherence can be useful, indeed necessary, for practical quantum computation, in particular, for the effective erasure of quantum memory in order to initialize the state of the quantum computer. The essential point behind the deleter is that the environment, by means of a dissipative interaction, furnishes a contractive map towards a pure state. We present a specific example of an amplitude damping channel provided by a two-level system's interaction with its environment in the weak Born-Markov approximation. This is contrasted with a purely dephasing, non-dissipative channel provided by a two-level system's interaction with its environment by means of a quantum nondemolition interaction. We point out that currently used state preparation techniques, for example using optical pumping, essentially perform as quantum deleters

Haploid deletion strains of Saccharomyces cerevisiae that determine survival during space flight

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Johanson, Kelly; Allen, Patricia L.; Gonzalez-Villalobos, Romer A.; Nesbit, Jacqueline; Nickerson, Cheryl A.; Höner zu Bentrup, Kerstin; Wilson, James W.; Ramamurthy, Rajee; D'Elia, Riccardo; Muse, Kenneth E.; Hammond, Jeffrey; Freeman, Jake; Stodieck, Louis S.; Hammond, Timothy G.

2007-02-01

This study identifies genes that determine survival during a space flight, using the model eukaryotic organism, Saccharomyces cerevisiae. Select strains of a haploid yeast deletion series grew during storage in distilled water in space, but not in ground based static or clinorotation controls. The survival advantages in space in distilled water include a 133-fold advantage for the deletion of PEX19, a chaperone and import receptor for newly- synthesized class I peroxisomal membrane proteins, to 77-40 fold for deletion strains lacking elements of aerobic respiration, isocitrate metabolism, and mitochondrial electron transport. Following automated addition of rich growth media, the space flight was associated with a marked survival advantage of strains with deletions in catalytically active genes including hydrolases, oxidoreductases and transferases. When compared to static controls, space flight was associated with a marked survival disadvantage of deletion strains lacking transporter, antioxidant and catalytic activity. This study identifies yeast deletion strains with a survival advantage during storage in distilled water and space flight, and amplifies our understanding of the genes critical for survival in space.

Restoration of half the normal dystrophin sequence in a double-deletion Duchenne muscular dystrophy family

Energy Technology Data Exchange (ETDEWEB)

Hoop, R.C.; Schwartz, L.S.; Hoffman, E.P. [Univ. of Pittsburgh School of Medicine, Pittsburgh, PA (United States); Russo, L.S. [Univ. of Florida, Jacksonville, FL (United States); Riconda, D.L. [Orlando Regional Medical Center, Orlando, FL (United States)

1994-02-01

Two male cousins with Duchenne muscular dystrophy were found to have different maternal dystrophin gene haplotypes and different deletion mutations. One propositus showed two noncontiguous deletions-one in the 5{prime}, proximal deletional hotspot region, and the other in the 3{prime}, more distal deletional hotspot region. The second propositus showed only the 5{prime} deletion. Using multiple fluorescent exon dosage and fluorescent multiplex CA repeat linkage analyses, the authors show that the mother of each propositus carries both deletions on the same grandmaternal X chromosome. This paradox is explained by a single recombinational event between the 2 deleted regions of one of the carrier`s dystrophin genes, giving rise to a son with a partially {open_quotes}repaired{close_quotes} gene retaining only the 5{prime} deletion. 20 refs., 4 figs.

Deletion at the GCNT2 Locus Causes Autosomal Recessive Congenital Cataracts.

Science.gov (United States)

Irum, Bushra; Khan, Shahid Y; Ali, Muhammad; Daud, Muhammad; Kabir, Firoz; Rauf, Bushra; Fatima, Fareeha; Iqbal, Hira; Khan, Arif O; Al Obaisi, Saif; Naeem, Muhammad Asif; Nasir, Idrees A; Khan, Shaheen N; Husnain, Tayyab; Riazuddin, Sheikh; Akram, Javed; Eghrari, Allen O; Riazuddin, S Amer

2016-01-01

The aim of this study is to identify the molecular basis of autosomal recessive congenital cataracts (arCC) in a large consanguineous pedigree. All participating individuals underwent a detailed ophthalmic examination. Each patient's medical history, particularly of cataracts and other ocular abnormalities, was compiled from available medical records and interviews with family elders. Blood samples were donated by all participating family members and used to extract genomic DNA. Genetic analysis was performed to rule out linkage to known arCC loci and genes. Whole-exome sequencing libraries were prepared and paired-end sequenced. A large deletion was found that segregated with arCC in the family, and chromosome walking was conducted to estimate the proximal and distal boundaries of the deletion mutation. Exclusion and linkage analysis suggested linkage to a region of chromosome 6p24 harboring GCNT2 (glucosaminyl (N-acetyl) transferase 2) with a two-point logarithm of odds score of 5.78. PCR amplifications of the coding exons of GCNT2 failed in individuals with arCC, and whole-exome data analysis revealed a large deletion on chromosome 6p in the region harboring GCNT2. Chromosomal walking using multiple primer pairs delineated the extent of the deletion to approximately 190 kb. Interestingly, a failure to amplify a junctional fragment of the deletion break strongly suggests an insertion in addition to the large deletion. Here, we report a novel insertion/deletion mutation at the GCNT2 locus that is responsible for congenital cataracts in a large consanguineous family.

Multigene deletions in lung adenocarcinomas from irradiated and control mice

International Nuclear Information System (INIS)

Zhang, Y.; Woloschak, G.E.

1996-01-01

K-ras codon 12 point mutations mRb and p53 gene deletions were examined in tissues from 120 normal lungs and lung adenocarcinomas that were Formalin-treated and paraffin-embedded 25 years ago. The results showed that 12 of 60 (20%) lung adenocarcinomas had mRb deletions. All lung adenocarcinomas that were initially found bearing deleted mRb had p53 deletions (15 of 15; 100%). A significantly higher mutation frequency for K-ras codon 12 point mutations was also found in the lung adenocarcinomas from mice exposed to 24 once-weekly neutron irradiation (10 of 10; 100%) compared with those exposed to 24 or 60 once-weekly γ-ray doses (5 of 10; 50%). The data suggested that p53 and K-ras gene alterations were two contributory factors responsible for the increased incidence of lung adenocarcinoma in B6CF 1 male mice exposed to protracted neutron radiation

Array-based FMR1 sequencing and deletion analysis in patients with a fragile X syndrome-like phenotype.

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Stephen C Collins

2010-03-01

Full Text Available Fragile X syndrome (FXS is caused by loss of function mutations in the FMR1 gene. Trinucleotide CGG-repeat expansions, resulting in FMR1 gene silencing, are the most common mutations observed at this locus. Even though the repeat expansion mutation is a functional null mutation, few conventional mutations have been identified at this locus, largely due to the clinical laboratory focus on the repeat tract.To more thoroughly evaluate the frequency of conventional mutations in FXS-like patients, we used an array-based method to sequence FMR1 in 51 unrelated males exhibiting several features characteristic of FXS but with normal CGG-repeat tracts of FMR1. One patient was identified with a deletion in FMR1, but none of the patients were found to have other conventional mutations.These data suggest that missense mutations in FMR1 are not a common cause of the FXS phenotype in patients who have normal-length CGG-repeat tracts. However, screening for small deletions of FMR1 may be of clinically utility.

List of DOE radioisotope customers with summary of radioisotope shipments FY 1978

International Nuclear Information System (INIS)

Burlison, J.S.; Laidler, R.I.

1979-05-01

The purpose of the document is to list DOE's radioisotopes production and distribution activities by its facilities at Argonne National Laboratory; Pacific Northwest Laboratory; Brookhaven National Laboratory; Hanford Engineering Development Laboratory; Idaho Operations Office; Los Alamos Scientific Laboratory; Mound Facility; Oak Ridge National Laboratory; Savannah River Laboratory; and UNC Nuclear Industries, Inc

Ecological feedbacks. Termite mounds can increase the robustness of dryland ecosystems to climatic change.

Science.gov (United States)

Bonachela, Juan A; Pringle, Robert M; Sheffer, Efrat; Coverdale, Tyler C; Guyton, Jennifer A; Caylor, Kelly K; Levin, Simon A; Tarnita, Corina E

2015-02-06

Self-organized spatial vegetation patterning is widespread and has been described using models of scale-dependent feedback between plants and water on homogeneous substrates. As rainfall decreases, these models yield a characteristic sequence of patterns with increasingly sparse vegetation, followed by sudden collapse to desert. Thus, the final, spot-like pattern may provide early warning for such catastrophic shifts. In many arid ecosystems, however, termite nests impart substrate heterogeneity by altering soil properties, thereby enhancing plant growth. We show that termite-induced heterogeneity interacts with scale-dependent feedbacks to produce vegetation patterns at different spatial grains. Although the coarse-grained patterning resembles that created by scale-dependent feedback alone, it does not indicate imminent desertification. Rather, mound-field landscapes are more robust to aridity, suggesting that termites may help stabilize ecosystems under global change. Copyright © 2015, American Association for the Advancement of Science.

Characterization of magnetic material in the mound-building termite Macrotermes gilvus in Southeast Asia

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Esa, Mohammad Faris Mohammad; Hassan, Ibrahim Haji [School of Chemical Sciences and Food Technology, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, Bangi, Selangor (Malaysia); Rahim, Faszly; Hanifah, Sharina Abu [School of Environmental Scieces and Natural Resources Faculty of Science and Technology, Universiti Kebangsaan Malaysia, Bangi, Selangor (Malaysia)

2015-09-25

Magnetic material such as magnetite are known as particles that respond to external magnetic field with their ferromagnetic properties as they are believed contribute to in responding to the geomagnetic field. These particles are used by terrestrial animals such as termites for navigation and orientation. Since our earth react as giant magnetic bar, the magnitude of this magnetic field present by intensity and direction (inclination and direction). The magnetic properties and presence of magnetite in termites Macrotermes gilvus, common mound-building termite were tested. M. gilvus termites was tested with a Vibrating Sample Magnetometer VSM to determine the magnetic properties of specimen. The crushed body sample was characterized with X-Ray Diffraction XRD to show the existent of magnetic material (magnetite) in the specimens. Results from VSM indicate that M. gilvus has diamagnetism properties. The characterization by XRD shows the existent of magnetic material in our specimen in low concentration.

Characterization of magnetic material in the mound-building termite Macrotermes gilvus in Southeast Asia

International Nuclear Information System (INIS)

Esa, Mohammad Faris Mohammad; Hassan, Ibrahim Haji; Rahim, Faszly; Hanifah, Sharina Abu

2015-01-01

Magnetic material such as magnetite are known as particles that respond to external magnetic field with their ferromagnetic properties as they are believed contribute to in responding to the geomagnetic field. These particles are used by terrestrial animals such as termites for navigation and orientation. Since our earth react as giant magnetic bar, the magnitude of this magnetic field present by intensity and direction (inclination and direction). The magnetic properties and presence of magnetite in termites Macrotermes gilvus, common mound-building termite were tested. M. gilvus termites was tested with a Vibrating Sample Magnetometer VSM to determine the magnetic properties of specimen. The crushed body sample was characterized with X-Ray Diffraction XRD to show the existent of magnetic material (magnetite) in the specimens. Results from VSM indicate that M. gilvus has diamagnetism properties. The characterization by XRD shows the existent of magnetic material in our specimen in low concentration

Characterization of magnetic material in the mound-building termite Macrotermes gilvus in Southeast Asia

Science.gov (United States)

Esa, Mohammad Faris Mohammad; Rahim, Faszly; Hassan, Ibrahim Haji; Hanifah, Sharina Abu

2015-09-01

Magnetic material such as magnetite are known as particles that respond to external magnetic field with their ferromagnetic properties as they are believed contribute to in responding to the geomagnetic field. These particles are used by terrestrial animals such as termites for navigation and orientation. Since our earth react as giant magnetic bar, the magnitude of this magnetic field present by intensity and direction (inclination and direction). The magnetic properties and presence of magnetite in termites Macrotermes gilvus, common mound-building termite were tested. M. gilvus termites was tested with a Vibrating Sample Magnetometer VSM to determine the magnetic properties of specimen. The crushed body sample was characterized with X-Ray Diffraction XRD to show the existent of magnetic material (magnetite) in the specimens. Results from VSM indicate that M. gilvus has diamagnetism properties. The characterization by XRD shows the existent of magnetic material in our specimen in low concentration.

Exploration of methods to localize DNA sequences missing from c-locus deletions

International Nuclear Information System (INIS)

Albritton, L.M.; Russell, L.B.; Montgomery, C.S.

1987-01-01

The authors have earlier characterized a large number of radiation-induced mutations at the c locus (on Chromosome 7) through genetic analysis, including extensive complementation tests. Based on this work, they have postulated that many of these mutations are deletions of various lengths, overlapping at c (the marker used in the mutation-rate experiments that generated the mutants). It was possible to apportion these deletions among 13 complementation groups and to fit them to a linear map of 8 functional units. Collectively, the deletions extend from a point between tp and c to one between sh-1 and Hbb, i.e., a genetic distance of from 6 to 10 cM, corresponding to at least 10 4 Kb of DNA. This year, the authors completed a pilot study designed to explore methods for finding DNA sequences that map to the region covered by the various c-deletions. The general plan was to probe DNA with clones derived from Chromosome-7-enriched libraries or with sequences known (or suspected) to reside in Chromosome 7. Three methods were explored for deriving the c-region-deficient DNA: (a) from mouse-hamster somatic-cell hydrids retaining a deleted mouse Chromosome 7, but no homologue; (b) from F 1 hybrids of M. musculus domesticus (carrying a c-locus deletion) by M. spretus; and (c) from F 1 hybrids of M. domesticus stocks carrying complementing deletions

Analysis of human HPRT- deletion mutants by the microarray-CGH (comparative genomic hybridization)

International Nuclear Information System (INIS)

Kodaira, M.; Sasaki, K.; Tagawa, H.; Omine, H.; Kushiro, J.; Takahashi, N.; Katayama, H.

2003-01-01

We are trying to evaluate genetic effects of radiation on human using mutation frequency as an indicator. For the efficient detection of mutations, it is important to understand the mechanism and the characteristics of radiation-induced mutations. We have started the analysis of hypoxanthine-guanine phosphoribosyl transferase (HPRT) mutants induced by X-ray in order to clarify the deletion size and the mutation-distribution. We analyzed 39 human X-ray induced HPRT-deletion mutants by using the microarray-CGH. The array for this analysis contains 57 BAC clones covering as much as possible of the 4Mb of the 5' side and 10Mb of the 3' side of the HPRT gene based on the NCBI genome database. DNA from parent strain and each HPRT-mutant strain are labeled with Cy5 and Cy3 respectively, and were mixed and hybridized on the array. Fluorescent intensity ratio of the obtained spots was analyzed using software we developed to identify clones corresponding to the deletion region. The deletion in these strains ranged up to 3.5 Mb on the 5' side and 6 Mb on the 3' side of the HPRT gene. Deletions in 13 strains ended around BAC clones located at about 3 Mb on the 5' side. On the 3' side, deletions extended up to the specific clones located at 1.5 Mb in 11 strains. The mutations seem to be complex on the 3' end of deletion; some accompanied duplications with deletions and others could not be explained by one mutation event. We need to confirm these results, taking into account the experimental reproducibility and the accuracy of the published genetic map. The results of the research using the microarray-CGH help us to search the regions where deletions are easily induced and to identify the factors affecting the range of deletions

Deletions induced by gamma rays in the genome of Escherichia coli

International Nuclear Information System (INIS)

Raha, Manidipa; Hutchinson, Franklin

1991-01-01

An Escherichia coli lysogen was constructed with a lambda phage bearing a lacZ gene surrounded by about 100 x 10 3 base-pairs of dispensable DNA. The lacZ mutants induced by gamma rays in this lysogen were more than 10% large deletions, ranging in size from 0.6 x 10 -3 to 70 x 10 3 base-pairs. These deletions were centered, not on lacZ, but on a ColE1 origin of DNA replication located 1.2 x 10 3 bases downstream from lacZ, suggesting that this origin of replication was involved in the process by which deletions were formed. In agreement with this hypothesis, a lysogen of the same phage without the ColE1 origin showed a very much lower percentage of radiation-induced deletions, as did a second lysogen of a lambda phage without any known plasmid origin of replication. Indirect evidence is presented for radiation-induced deletions centered on the lambda origin of DNA replication in a lysogen. (author)

Construction of a psb C deletion strain in Synechocystis 6803.

Science.gov (United States)

Goldfarb, N; Knoepfle, N; Putnam-Evans, C

1997-01-01

Synechocystis 6803 is a cyanobacterium that carries out-oxygenic photosynthesis. We are interested in the introduction of mutations in the large extrinsic loop region of the CP43 protein of Photosystem II (PSII). CP43 appears to be required for the stable assembly of the PSII complex and also appears to play a role in photosynthetic oxygen evolution. Deletion of short segments of the large extrinsic loop results in mutants incapable of evolving oxygen. Alterations in psbC, the gene encoding CP43, are introduced into Synechocystis 6803 by transformation and homologous recombination. Specifically, plasmid constructs bearing the site-directed mutations are introduced into a deletion strain where the portion of the gene encoding the area of mutation has been deleted and replaced by a gene conferring antibiotic resistance. We have constructed a deletion strain of Synechocystis appropriate for the introduction of mutations in the large extrinsic loop of CP43 and have used it successfully to produce site-directed mutants.

The first Dutch SDHB founder deletion in paraganglioma – pheochromocytoma patients

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Devilee Peter

2009-04-01

Full Text Available Abstract Background Germline mutations of the tumor suppressor genes SDHB, SDHC and SDHD play a major role in hereditary paraganglioma and pheochromocytoma. These three genes encode subunits of succinate dehydrogenase (SDH, the mitochondrial tricarboxylic acid cycle enzyme and complex II component of the electron transport chain. The majority of variants of the SDH genes are missense and nonsense mutations. To date few large deletions of the SDH genes have been described. Methods We carried out gene deletion scanning using MLPA in 126 patients negative for point mutations in the SDH genes. We then proceeded to the molecular characterization of deletions, mapping breakpoints in each patient and used haplotype analysis to determine whether the deletions are due to a mutation hotspot or if a common haplotype indicated a single founder mutation. Results A novel deletion of exon 3 of the SDHB gene was identified in nine apparently unrelated Dutch patients. An identical 7905 bp deletion, c.201-4429_287-933del, was found in all patients, resulting in a frameshift and a predicted truncated protein, p.Cys68HisfsX21. Haplotype analysis demonstrated a common haplotype at the SDHB locus. Index patients presented with pheochromocytoma, extra-adrenal PGL and HN-PGL. A lack of family history was seen in seven of the nine cases. Conclusion The identical exon 3 deletions and common haplotype in nine patients indicates that this mutation is the first Dutch SDHB founder mutation. The predominantly non-familial presentation of these patients strongly suggests reduced penetrance. In this small series HN-PGL occurs as frequently as pheochromocytoma and extra-adrenal PGL.

Large-scale deletions of the ABCA1 gene in patients with hypoalphalipoproteinemia.

Science.gov (United States)

Dron, Jacqueline S; Wang, Jian; Berberich, Amanda J; Iacocca, Michael A; Cao, Henian; Yang, Ping; Knoll, Joan; Tremblay, Karine; Brisson, Diane; Netzer, Christian; Gouni-Berthold, Ioanna; Gaudet, Daniel; Hegele, Robert A

2018-06-04

Copy-number variations (CNVs) have been studied in the context of familial hypercholesterolemia but have not yet been evaluated in patients with extremes of high-density lipoprotein (HDL) cholesterol levels. We evaluated targeted next-generation sequencing data from patients with very low HDL cholesterol (i.e. hypoalphalipoproteinemia) using the VarSeq-CNV caller algorithm to screen for CNVs disrupting the ABCA1, LCAT or APOA1 genes. In four individuals, we found three unique deletions in ABCA1: a heterozygous deletion of exon 4, a heterozygous deletion spanning exons 8 to 31, and a heterozygous deletion of the entire ABCA1 gene. Breakpoints were identified using Sanger sequencing, and the full-gene deletion was also confirmed using exome sequencing and the Affymetrix CytoScanTM HD Array. Before now, large-scale deletions in candidate HDL genes have not been associated with hypoalphalipoproteinemia; our findings indicate that CNVs in ABCA1 may be a previously unappreciated genetic determinant of low HDL cholesterol levels. By coupling bioinformatic analyses with next-generation sequencing data, we can successfully assess the spectrum of genetic determinants of many dyslipidemias, now including hypoalphalipoproteinemia. Published under license by The American Society for Biochemistry and Molecular Biology, Inc.

Recurrence and Variability of Germline EPCAM Deletions in Lynch Syndrome

NARCIS (Netherlands)

Kuiper, Roland P.; Vissers, Lisenka E. L. M.; Venkatachalam, Ramprasath; Bodmer, Danielle; Hoenselaar, Eveline; Goossens, Monique; Haufe, Aline; Kamping, Eveline; Niessen, Renee C.; Hogervorst, Frans B. L.; Gille, Johan J. P.; Redeker, Bert; Tops, Carli M. J.; van Gijn, Marielle E.; van den Ouweland, Ans M. W.; Rahner, Nils; Steinke, Verena; Kahl, Philip; Holinski-Feder, Elke; Morak, Monika; Kloor, Matthias; Stemmler, Susanne; Betz, Beate; Hutter, Pierre; Bunyan, David J.; Syngal, Sapna; Culver, Julie O.; Graham, Tracy; Chan, Tsun L.; Nagtegaal, Iris D.; van Krieken, J. Han J. M.; Schackert, Hans K.; Hoogerbrugge, Nicoline; van Kessel, Ad Geurts; Ligtenberg, Marjolijn J. L.

Recently, we identified 3' end deletions in the EPCAM gene as a novel cause of Lynch syndrome. These truncating EPCAM deletions cause allele-specific epigenetic silencing of the neighboring DNA mismatch repair gene MSH2 in tissues expressing EPCAM. Here we screened a cohort of unexplained Lynch-like

Genomic rearrangements by LINE-1 insertion-mediated deletion in the human and chimpanzee lineages.

Science.gov (United States)

Han, Kyudong; Sen, Shurjo K; Wang, Jianxin; Callinan, Pauline A; Lee, Jungnam; Cordaux, Richard; Liang, Ping; Batzer, Mark A

2005-01-01

Long INterspersed Elements (LINE-1s or L1s) are abundant non-LTR retrotransposons in mammalian genomes that are capable of insertional mutagenesis. They have been associated with target site deletions upon insertion in cell culture studies of retrotransposition. Here, we report 50 deletion events in the human and chimpanzee genomes directly linked to the insertion of L1 elements, resulting in the loss of approximately 18 kb of sequence from the human genome and approximately 15 kb from the chimpanzee genome. Our data suggest that during the primate radiation, L1 insertions may have deleted up to 7.5 Mb of target genomic sequences. While the results of our in vivo analysis differ from those of previous cell culture assays of L1 insertion-mediated deletions in terms of the size and rate of sequence deletion, evolutionary factors can reconcile the differences. We report a pattern of genomic deletion sizes similar to those created during the retrotransposition of Alu elements. Our study provides support for the existence of different mechanisms for small and large L1-mediated deletions, and we present a model for the correlation of L1 element size and the corresponding deletion size. In addition, we show that internal rearrangements can modify L1 structure during retrotransposition events associated with large deletions.

Conditional deletion of Pten causes bronchiolar hyperplasia.

Science.gov (United States)

Davé, Vrushank; Wert, Susan E; Tanner, Tiffany; Thitoff, Angela R; Loudy, Dave E; Whitsett, Jeffrey A

2008-03-01

Tumor suppressor phosphatase and tensin homolog deleted on chromosome 10 (PTEN) is a lipid phosphatase that regulates multiple cellular processes including cell polarity, migration, proliferation, and carcinogenesis. In this work, we demonstrate that conditional deletion of Pten (Pten(Delta/Delta)) in the respiratory epithelial cells of the developing mouse lung caused epithelial cell proliferation and hyperplasia as early as 4 to 6 weeks of age. While bronchiolar cell differentiation was normal, as indicated by beta-tubulin and FOXJ1 expression in ciliated cells and by CCSP expression in nonciliated cells, cell proliferation (detected by expression of Ki-67, phospho-histone-H3, and cyclin D1) was increased and associated with activation of the AKT/mTOR survival pathway. Deletion of Pten caused papillary epithelial hyperplasia characterized by a hypercellular epithelium lining papillae with fibrovascular cores that protruded into the airway lumens. Cell polarity, as assessed by subcellular localization of cadherin, beta-catenin, and zonula occludens-1, was unaltered. PTEN is required for regulation of epithelial cell proliferation in the lung and for the maintenance of the normal simple columnar epithelium characteristics of bronchi and bronchioles.

Impaired spermatogenesis and gr/gr deletions related to Y chromosome haplogroups in Korean men.

Directory of Open Access Journals (Sweden)

Jin Choi

Full Text Available Microdeletion of the Azoospermia Factor (AZF regions in Y chromosome is a well-known genetic cause of male infertility resulting from spermatogenetic impairment. However, the partial deletions of AZFc region related to spermatogenetic impairment are controversial. In this study, we characterized partial deletion of AZFc region in Korean patients with spermatogenetic impairment and assessed whether the DAZ and CDY1 contributes to the phenotype in patients with gr/gr deletions. Total of 377 patients with azoo-/oligozoospermia and 217 controls were analyzed using multiplex polymerase chain reaction (PCR, analysis of DAZ-CDY1 sequence family variants (SFVs, and quantitative fluorescent (QF-PCR. Of the 377 men with impaired spermatogenesis, 59 cases (15.6% had partial AZFc deletions, including 32 gr/gr (8.5%, 22 b2/b3 (5.8%, four b1/b3 (1.1% and one b3/b4 (0.3% deletion. In comparison, 14 of 217 normozoospermic controls (6.5% had partial AZFc deletions, including five gr/gr (2.3% and nine b2/b3 (4.1% deletions. The frequency of gr/gr deletions was significantly higher in the azoo-/oligozoospermic group than in the normozoospermic control group (p = 0.003; OR = 3.933; 95% CI = 1.509-10.250. Concerning Y haplogroup, we observed no significant differences in the frequency of gr/gr deletions between the case and the control groups in the YAP+ lineages, while gr/gr deletion were significantly higher in azoo-/oligozoospermia than normozoospermia in the YAP- lineage (p = 0.004; OR = 6.341; 95% CI = 1.472-27.312. Our data suggested that gr/gr deletion is associated with impaired spermatogenesis in Koreans with YAP- lineage, regardless of the gr/gr subtypes.

Coexistence of 9p Deletion Syndrome and Autism Spectrum Disorder

Science.gov (United States)

Günes, Serkan; Ekinci, Özalp; Ekinci, Nuran; Toros, Fevziye

2017-01-01

Deletion or duplication of the short arm of chromosome 9 may lead to a variety of clinical conditions including craniofacial and limb abnormalities, skeletal malformations, mental retardation, and autism spectrum disorder. Here, we present a case report of 5-year-old boy with 9p deletion syndrome and autism spectrum disorder.

Generating Bona Fide Mammalian Prions with Internal Deletions.

Science.gov (United States)

Munoz-Montesino, Carola; Sizun, Christina; Moudjou, Mohammed; Herzog, Laetitia; Reine, Fabienne; Chapuis, Jérôme; Ciric, Danica; Igel-Egalon, Angelique; Laude, Hubert; Béringue, Vincent; Rezaei, Human; Dron, Michel

2016-08-01

Mammalian prions are PrP proteins with altered structures causing transmissible fatal neurodegenerative diseases. They are self-perpetuating through formation of beta-sheet-rich assemblies that seed conformational change of cellular PrP. Pathological PrP usually forms an insoluble protease-resistant core exhibiting beta-sheet structures but no more alpha-helical content, loosing the three alpha-helices contained in the correctly folded PrP. The lack of a high-resolution prion structure makes it difficult to understand the dynamics of conversion and to identify elements of the protein involved in this process. To determine whether completeness of residues within the protease-resistant domain is required for prions, we performed serial deletions in the helix H2 C terminus of ovine PrP, since this region has previously shown some tolerance to sequence changes without preventing prion replication. Deletions of either four or five residues essentially preserved the overall PrP structure and mutant PrP expressed in RK13 cells were efficiently converted into bona fide prions upon challenge by three different prion strains. Remarkably, deletions in PrP facilitated the replication of two strains that otherwise do not replicate in this cellular context. Prions with internal deletion were self-propagating and de novo infectious for naive homologous and wild-type PrP-expressing cells. Moreover, they caused transmissible spongiform encephalopathies in mice, with similar biochemical signatures and neuropathologies other than the original strains. Prion convertibility and transfer of strain-specific information are thus preserved despite shortening of an alpha-helix in PrP and removal of residues within prions. These findings provide new insights into sequence/structure/infectivity relationship for prions. Prions are misfolded PrP proteins that convert the normal protein into a replicate of their own abnormal form. They are responsible for invariably fatal neurodegenerative

Characterization of genetic deletions in Becker muscular dystrophy using monoclonal antibodies against a deletion-prone region of dystrophin

Energy Technology Data Exchange (ETDEWEB)

Thanh, L.T.; Man, Nguyen Thi; Morris, G.E. [Wales Institute, Clwyd (United Kingdom)] [and others

1995-08-28

We have produced a new panel of 20 monoclonal antibodies (mAbs) against a region of the dystrophin protein corresponding to a deletion-prone region of the Duchenne muscular dystrophy gene (exons 45-50). We show that immunohistochemistry or Western blotting with these {open_quotes}exon-specific{close_quotes} mAbs can provide a valuable addition to Southern blotting or PCR methods for the accurate identification of genetic deletions in Becker muscular dystrophy patients. The antibodies were mapped to the following exons: exon 45 (2 mAbs), exon 46 (6), exon 47 (1), exons 47/48 (4), exons 48-50 (6), and exon 50 (1). PCR amplification of single exons or groups of exons was used both to produce specific dystrophin immunogens and to map the mAbs obtained. PCR-mediated mutagenesis was also used to identify regions of dystrophin important for mAb binding. Because the mAbs can be used to characterize the dystrophin produced by individual muscle fibres, they will also be useful for studying {open_quotes}revertant{close_quotes} fibres in Duchenne muscle and for monitoring the results of myoblast therapy trials in MD patients with deletions in this region of the dystrophin gene. 27 refs., 7 figs., 3 tabs.

22q13.3 Deletion Syndrome: An Underdiagnosed Cause of Mental Retardation

Directory of Open Access Journals (Sweden)

ilknur Erol

2015-03-01

Full Text Available Phelan-McDermid syndrome, also known as 22q13.3 deletion syndrome, is characterized by global developmental delay, absent or delayed speech, generalized hypotonia, and minor physical anomalies. The deletion typically involves the terminal band 22q13.3 and has been associated with both familial and de-novo translocations. We report the case of an 11-year-old Turkish girl with 22q13.3 deletion syndrome presenting with repeated seizures during the course of a rubella infection. We also review the clinical features of 22q13.3 deletion syndrome and emphasize the importance of considering a rare microdeletion syndrome for idiopathic mental retardation when results of a routine karyotype analysis are normal. To the best of our knowledge, this is the first reported case of a Turkish patient with isolated 22q13.3 deletion syndrome. [Cukurova Med J 2015; 40(1.000: 169-173

Size unlimited markerless deletions by a transconjugative plasmid-system in Bacillus licheniformis.

Science.gov (United States)

Rachinger, Michael; Bauch, Melanie; Strittmatter, Axel; Bongaerts, Johannes; Evers, Stefan; Maurer, Karl-Heinz; Daniel, Rolf; Liebl, Wolfgang; Liesegang, Heiko; Ehrenreich, Armin

2013-09-20

Conjugative shuttle vectors of the pKVM series, based on an IncP transfer origin and the pMAD vector with a temperature sensitive replication were constructed to establish a markerless gene deletion protocol for Bacilli without natural competence such as the exoenzyme producer Bacillus licheniformis. The pKVM plasmids can be conjugated to strains of B. licheniformis and B. subtilis. For chromosomal gene deletion, regions flanking the target gene are fused and cloned in a pKVM vector prior to conjugative transfer from Escherichia coli to B. licheniformis. Appropriate markers on the vector backbone allow for the identification of the integration at the target locus and thereafter the vector excision, both events taking place via homologous recombination. The functionality of the deletion system was demonstrated with B. licheniformis by a markerless 939 bp in-frame deletion of the yqfD gene and the deletion of a 31 kbp genomic segment carrying a PBSX-like prophage. Copyright © 2013 Elsevier B.V. All rights reserved.

Multi-exon deletions of the FBN1 gene in Marfan syndrome

Directory of Open Access Journals (Sweden)

Schrijver Iris

2001-10-01

Full Text Available Abstract Background Mutations in the fibrillin -1 gene (FBN1 cause Marfan syndrome (MFS, an autosomal dominant multi-system connective tissue disorder. The 200 different mutations reported in the 235 kb, 65 exon-containing gene include only one family with a genomic multi-exon deletion. Methods We used long-range RT-PCR for mutation detection and long-range genomic PCR and DNA sequencing for identification of deletion breakpoints, allele-specific transcript analyses to determine stability of the mutant RNA, and pulse-chase studies to quantitate fibrillin synthesis and extracellular matrix deposition in cultured fibroblasts. Southern blots of genomic DNA were probed with three overlapping fragments covering the FBN1 coding exons Results Two novel multi-exon FBN1 deletions were discovered. Identical nucleotide pentamers were found at or near the intronic breakpoints. In a Case with classic MFS, an in-frame deletion of exons 42 and 43 removed the C-terminal 24 amino acids of the 5th LTBP (8-cysteine domain and the adjacent 25th calcium-binding EGF-like (6-cysteine domain. The mutant mRNA was stable, but fibrillin synthesis and matrix deposition were significantly reduced. A Case with severe childhood-onset MFS has a de novo deletion of exons 44–46 that removed three EGF-like domains. Fibrillin protein synthesis was normal, but matrix deposition was strikingly reduced. No genomic rearrangements were detected by Southern analysis of 18 unrelated MFS samples negative for FBN1 mutation screening. Conclusions Two novel deletion cases expand knowledge of mutational mechanisms and genotype/phenotype correlations of fibrillinopathies. Deletions or mutations affecting an LTBP domain may result in unstable mutant protein cleavage products that interfere with microfibril assembly.

Association between F508 deletion in CFTR and chronic pancreatitis risk.

Science.gov (United States)

Zhao, Dong; Xu, Yanzhen; Li, Jiatong; Fu, Shien; Xiao, Feifan; Song, Xiaowei; Xie, Zhibin; Jiang, Min; He, Yan; Liu, Chengwu; Wen, Qiongxian; Yang, Xiaoli

2017-09-01

The cystic fibrosis transmembrane conductance regulator (CFTR) has been reported to influence individual susceptibility to chronic pancreatitis (CP), but the results of previous studies are controversial. We performed a study to demonstrate the relationship between CFTR and CP. We searched PubMed, Scopus, and Embase for studies of patients with CP. Seven studies from 1995 to 2016 were identified, and included 64,832 patients. Pooled prevalence and 95% confidence intervals (CIs) were calculated. F508 deletion in CFTR was significantly positively associated with CP risk in the overall analysis (odds ratio [OR]=3.20, 95% CI: 2.30-4.44, I 2 =31.7%). In subgroup analysis stratified by ethnicity, F508 deletion was significantly associated with CP risk in Indian populations, using a fixed effects model (ORs=5.45, 95% CI: 2.52-11.79, I 2 =0.0%), and in non-Indian populations, using a random effects model (ORs=3.59, 95% CI: 1.73-7.48, I 2 =60.9%). At the same time, we found that Indians with F508 deletion had much higher CP prevalence than non-Indians. Interestingly, F508 deletion was also associated with CP and idiopathic CP risk in subgroup analysis stratified by aeitiology, using the fixed effects model. Based on current evidence, F508 deletion is a risk factor for CP, and Indians with F508 deletion have much higher CP morbidity. Copyright © 2017 Editrice Gastroenterologica Italiana S.r.l. Published by Elsevier Ltd. All rights reserved.

Linguistic and Psychomotor Development in Children with Chromosome 14 Deletions

Science.gov (United States)

Zampini, Laura; D'Odorico, Laura; Zanchi, Paola; Zollino, Marcella; Neri, Giovanni

2012-01-01

The present study focussed on a specific type of rare genetic condition: chromosome 14 deletions. Children with this genetic condition often show developmental delays and brain and neurological problems, although the type and severity of symptoms varies depending on the size and location of the deleted genetic material. The specific aim of the…

Molecular and cytogenetic investigation of Y chromosome deletions over three generations facilitated by intracytoplasmic sperm injection.

Science.gov (United States)

Minor, Agata; Wong, Edgar Chan; Harmer, Karynn; Ma, Sai

2007-08-01

The azoospermic factor (AZF) region is critical for normal spermatogenesis since microdeletions and partial deletions have been associated with infertility. We investigate the diagnostic ability of karyotyping in detecting clinically relevant Y chromosome deletions. The clinical significance of heterochromatin deletions, microdeletions and partial AZFc deletions is also evaluated. A patient with a Yq deletion, affected by severe oligoasthenoteratozoospermia, underwent intracytoplasmic sperm injection (ICSI) which resulted in the birth of a healthy baby boy. The patient, his father and his son underwent Y chromosome microdeletion and partial AZFc deletion screening. We also studied the aneuploidy rate in the sperm of the patient by fluorescent in situ hybridization. AZF microdeletions were absent in the family. However, microdeletion analysis confirmed that the Yq deletion was limited to the heterochromatin. We found a partial AZFc gr/gr deletion in all three family members. We observed an increased rate of sex chromosome aneuploidy in the infertile patient. Cytogenetic analysis was misleading in identifying the Yq breakpoint. Infertility observed in the patient was associated with the gr/gr partial deletion. However, because of the incomplete penetrance of gr/gr deletions, the consequence of the vertical transmission of the deletion through ICSI remains unknown. Copyright (c) 2007 John Wiley & Sons, Ltd.

The generation of chromosomal deletions to provide extensive coverage and subdivision of the Drosophila melanogaster genome.

Science.gov (United States)

Cook, R Kimberley; Christensen, Stacey J; Deal, Jennifer A; Coburn, Rachel A; Deal, Megan E; Gresens, Jill M; Kaufman, Thomas C; Cook, Kevin R

2012-01-01

Chromosomal deletions are used extensively in Drosophila melanogaster genetics research. Deletion mapping is the primary method used for fine-scale gene localization. Effective and efficient deletion mapping requires both extensive genomic coverage and a high density of molecularly defined breakpoints across the genome. A large-scale resource development project at the Bloomington Drosophila Stock Center has improved the choice of deletions beyond that provided by previous projects. FLP-mediated recombination between FRT-bearing transposon insertions was used to generate deletions, because it is efficient and provides single-nucleotide resolution in planning deletion screens. The 793 deletions generated pushed coverage of the euchromatic genome to 98.4%. Gaps in coverage contain haplolethal and haplosterile genes, but the sizes of these gaps were minimized by flanking these genes as closely as possible with deletions. In improving coverage, a complete inventory of haplolethal and haplosterile genes was generated and extensive information on other haploinsufficient genes was compiled. To aid mapping experiments, a subset of deletions was organized into a Deficiency Kit to provide maximal coverage efficiently. To improve the resolution of deletion mapping, screens were planned to distribute deletion breakpoints evenly across the genome. The median chromosomal interval between breakpoints now contains only nine genes and 377 intervals contain only single genes. Drosophila melanogaster now has the most extensive genomic deletion coverage and breakpoint subdivision as well as the most comprehensive inventory of haploinsufficient genes of any multicellular organism. The improved selection of chromosomal deletion strains will be useful to nearly all Drosophila researchers.

Spectrum of phenotypic anomalies in four families with deletion of the SHOX enhancer region.

Science.gov (United States)

Gatta, Valentina; Palka, Chiara; Chiavaroli, Valentina; Franchi, Sara; Cannataro, Giovanni; Savastano, Massimo; Cotroneo, Antonio Raffaele; Chiarelli, Francesco; Mohn, Angelika; Stuppia, Liborio

2014-07-23

SHOX alterations have been reported in 67% of patients affected by Léri-Weill dyschondrosteosis (LWD), with a larger prevalence of gene deletions than point mutations. It has been recently demonstrated that these deletions can involve the SHOX enhancer region, rather that the coding region, with variable phenotype of the affected patients.Here, we report a SHOX gene analysis carried out by MLPA in 14 LWD patients from 4 families with variable phenotype. All patients presented a SHOX enhancer deletion. In particular, a patient with a severe bilateral Madelung deformity without short stature showed a homozygous alteration identical to the recently described 47.5 kb PAR1 deletion. Moreover, we identified, for the first time, in three related patients with a severe bilateral Madelung deformity, a smaller deletion than the 47.5 kb PAR1 deletion encompassing the same enhancer region (ECR1/CNE7). Data reported in this study provide new information about the spectrum of phenotypic alterations showed by LWD patients with different deletions of the SHOX enhancer region.

Evaluation of the Argonne National Laboratory servo-controlled calorimeter system

International Nuclear Information System (INIS)

Foster, L.A.

1997-01-01

The control system of a replacement mode, twin-bridge, water-bath calorimeter originally built by Mound EG ampersand G Applied Technologies was modified by Argonne National Laboratory. The calorimeter was upgraded with a PC-based computer control and data acquisition system. The system was redesigned to operate in a servo-control mode, and a preheater was constructed to allow pre-equilibration of samples. The instrument was sent to the Plutonium Facility at Los Alamos National Laboratory for testing and evaluation of its performance in the field using heat source standards and plutonium process materials. The important parameters for calorimeter operation necessary to satisfy the nuclear materials control and accountability requirements of the Plutonium Facility were evaluated over a period of several months. These parameters include calorimeter stability, measurement precision and accuracy, and average measurement time. The observed measurement precision and accuracy were found to be acceptable for most accountability measurements, although they were slightly larger than the values for calorimeters in routine use at the Plutonium Facility. Average measurement times were significantly shorter than measurement times for identical items in the Plutonium Facility calorimeters. Unexplained shifts in the baseline measurements were observed on numerous occasions. These shifts could lead to substantial measurement errors if they are not very carefully monitored by the operating facility. Detailed results of the experimental evaluation are presented in this report

The detection of large deletions or duplications in genomic DNA.

Science.gov (United States)

Armour, J A L; Barton, D E; Cockburn, D J; Taylor, G R

2002-11-01

While methods for the detection of point mutations and small insertions or deletions in genomic DNA are well established, the detection of larger (>100 bp) genomic duplications or deletions can be more difficult. Most mutation scanning methods use PCR as a first step, but the subsequent analyses are usually qualitative rather than quantitative. Gene dosage methods based on PCR need to be quantitative (i.e., they should report molar quantities of starting material) or semi-quantitative (i.e., they should report gene dosage relative to an internal standard). Without some sort of quantitation, heterozygous deletions and duplications may be overlooked and therefore be under-ascertained. Gene dosage methods provide the additional benefit of reporting allele drop-out in the PCR. This could impact on SNP surveys, where large-scale genotyping may miss null alleles. Here we review recent developments in techniques for the detection of this type of mutation and compare their relative strengths and weaknesses. We emphasize that comprehensive mutation analysis should include scanning for large insertions and deletions and duplications. Copyright 2002 Wiley-Liss, Inc.

Rare deletions at 16p13.11 predispose to a diverse spectrum of sporadic epilepsy syndromes.

Science.gov (United States)

Heinzen, Erin L; Radtke, Rodney A; Urban, Thomas J; Cavalleri, Gianpiero L; Depondt, Chantal; Need, Anna C; Walley, Nicole M; Nicoletti, Paola; Ge, Dongliang; Catarino, Claudia B; Duncan, John S; Kasperaviciūte, Dalia; Tate, Sarah K; Caboclo, Luis O; Sander, Josemir W; Clayton, Lisa; Linney, Kristen N; Shianna, Kevin V; Gumbs, Curtis E; Smith, Jason; Cronin, Kenneth D; Maia, Jessica M; Doherty, Colin P; Pandolfo, Massimo; Leppert, David; Middleton, Lefkos T; Gibson, Rachel A; Johnson, Michael R; Matthews, Paul M; Hosford, David; Kälviäinen, Reetta; Eriksson, Kai; Kantanen, Anne-Mari; Dorn, Thomas; Hansen, Jörg; Krämer, Günter; Steinhoff, Bernhard J; Wieser, Heinz-Gregor; Zumsteg, Dominik; Ortega, Marcos; Wood, Nicholas W; Huxley-Jones, Julie; Mikati, Mohamad; Gallentine, William B; Husain, Aatif M; Buckley, Patrick G; Stallings, Ray L; Podgoreanu, Mihai V; Delanty, Norman; Sisodiya, Sanjay M; Goldstein, David B

2010-05-14

Deletions at 16p13.11 are associated with schizophrenia, mental retardation, and most recently idiopathic generalized epilepsy. To evaluate the role of 16p13.11 deletions, as well as other structural variation, in epilepsy disorders, we used genome-wide screens to identify copy number variation in 3812 patients with a diverse spectrum of epilepsy syndromes and in 1299 neurologically-normal controls. Large deletions (> 100 kb) at 16p13.11 were observed in 23 patients, whereas no control had a deletion greater than 16 kb. Patients, even those with identically sized 16p13.11 deletions, presented with highly variable epilepsy phenotypes. For a subset of patients with a 16p13.11 deletion, we show a consistent reduction of expression for included genes, suggesting that haploinsufficiency might contribute to pathogenicity. We also investigated another possible mechanism of pathogenicity by using hybridization-based capture and next-generation sequencing of the homologous chromosome for ten 16p13.11-deletion patients to look for unmasked recessive mutations. Follow-up genotyping of suggestive polymorphisms failed to identify any convincing recessive-acting mutations in the homologous interval corresponding to the deletion. The observation that two of the 16p13.11 deletions were larger than 2 Mb in size led us to screen for other large deletions. We found 12 additional genomic regions harboring deletions > 2 Mb in epilepsy patients, and none in controls. Additional evaluation is needed to characterize the role of these exceedingly large, non-locus-specific deletions in epilepsy. Collectively, these data implicate 16p13.11 and possibly other large deletions as risk factors for a wide range of epilepsy disorders, and they appear to point toward haploinsufficiency as a contributor to the pathogenicity of deletions. Copyright (c) 2010 The American Society of Human Genetics. Published by Elsevier Inc. All rights reserved.

Deletion Mutagenesis and Identification of Causative Mutations in Maize.

Science.gov (United States)

Jia, Shangang; Li, Aixia; Zhang, Chi; Holding, David

2018-01-01

We describe a method for gamma-irradiation of mature maize seeds to generate mutants with opaque endosperm and reduced kernel fill phenotypes. We also describe methods for mapping mutants and identifying causal gene mutations. Using this method, a population of 1788M2 families and 47 Mo17 × F2s showing stable, segregating, and viable kernel phenotypes was developed. For molecular characterization of the mutants, we utilized a novel functional genomics platform that combines separate Bulked Segregant RNA and exome sequencing data sets (BSREx-seq) to map causative mutations and identify candidate genes within mapping intervals. We also describe the use of exome capture sequencing of F2 mutant and normal pools to perform mapping and candidate gene identification without the need for separate RNA-seq (BSEx-seq). To exemplify the utility of the deletion mutants for functional genomics and provide proof-of-concept for the bioinformatics platform, we summarize the identification of the causative deletion in two mutants. Mutant 937, which was characterized by BSREx-seq, harbors a 6203-bp in-frame deletion covering six exons within the Opaque-1 gene on chromosome 4. Preliminary investigation of opaque mutant 1486 with BSEx-seq shows a tight mapping interval and associated deletion on chromosome 10.

Aerial radiological survey of the US Department of Energy's Mound Facility, Miamisburg, Ohio

International Nuclear Information System (INIS)

1978-03-01

An aerial radiological survey to measure terrestrial gamma radiation was carried out by helicopter over an area centered on Mound Facility, a 180 acre area adjacent to the southern edge of the city of Miamisburg, Ohio. This survey was part of an effort to document background radiation levels around nuclear processing and handling facilities owned or contracted by the United States Department of Energy (DOE). Survey activities were conducted and performed by EG and G for the DOE. Wright-Patterson Air Force Base served as the survey base of operations. During the survey, gamma ray data were collected over a 12.3 km 2 area by flying an east-west grid of lines spaced 61 m apart, flying slowly over several selected areas, and hovering over several spots of interest. The processed data indicated that the on-site radioactivity was primarily due to radionuclides currently being handled or processed at the Facility, and that lesser activity could be attributed to previously handled or processed nuclear materials. Off-site data showed the radioactivity to be that only due to naturally occurring radionuclides

ASYMMETRIC EFFECTS OF ADDED VERSUS DELETED FEATURE OF STIMULUS ON RECOGNITION MEMORY

OpenAIRE

内野, 八潮; 箱田, 裕司

2000-01-01

This article reviewed a number of studies which revealed superiority of addition over deletion. Such an asymmetric effect was found in picture recognitioa memory, discrimination learning, proofreading for misspellings and so on. However, few studies have controlled typicality of original stimulus or the effect of addition and deletion on typicality of changed stimulus. Therefore this article focussed particularly on the studies in which addition and deletion applied to original stimulus was d...

A New Intergenic α-Globin Deletion (α-αΔ125) Found in a Kabyle Population.

Science.gov (United States)

Singh, Amrathlal Rabbind; Lacan, Philippe; Cadet, Estelle; Bignet, Patricia; Dumesnil, Cécile; Vannier, Jean-Pierre; Joly, Philippe; Rochette, Jacques

2016-01-01

We have identified a deletion of 125 bp (α-α(Δ125)) (NG_000006.1: g.37040_37164del) in the α-globin gene cluster in a Kabyle population. A combination of singlex and multiplex polymerase chain reaction (PCR)-based assays have been used to identify the molecular defect. Sequencing of the abnormal PCR amplification product revealed a novel α1-globin promoter deletion. The endpoints of the deletion were characterized by sequencing the deletion junctions of the mutated allele. The observed deletion was located 378 bp upstream of the α1-globin gene transcription initiation site and leaves the α2 gene intact. In some patients, the α-α(Δ125) deletion was shown to segregate with Hb S (HBB: c.20A>T) and/or Hb C (HBB: c.19G>A) or a β-thalassemic allele. The α-α(Δ125) deletion has no discernible effect on red cell indices when inherited with no other abnormal globin genes. The family study demonstrated that the deletion is heritable. This is the only example of an intergenic α2-α1 non coding DNA deletion, leaving the α2-globin gene and the α1 coding part intact.

Field test of plutonium and thorium contaminated clay soils from the Mound Site using the ACT*DE*CON Process

International Nuclear Information System (INIS)

Johnson, J.O.; Swift, N.A.; Church, R.H.; Neff, R.A.

1998-01-01

A treatability test was run during the summer and fall of 1997 to demonstrate the effectiveness of ACT*DE*CON for removing plutonium and thorium from the clay soils around Mound. ACT*DE*CON is a proprietary solution patented by Selentec. The process utilized a highly selective dissolution of the contaminants by the use of a chemical wash. The pilot scale process involved pretreatment of the soil in an attrition scrubber with ACT*DE*CON solution. This blended solution was then passed through a counter-current extraction chamber where additional contact with ACT*DE*CON solution occurred, followed by a rinse cycle. During this process sand was added to aid contact of the solution with the soil particles. The sand is removed during the rinse step and reused. The chelating agent is separated from the contaminant and recycled back into the process, along with the reverse osmosis permeate. The resulting solution can be further treated to concentrate the contaminant. Three different types of environmental soils were tested -- plutonium and thorium contaminated soils with the natural clay content, and plutonium contaminated soils with a high percentage of fine clay particles. The goal of these tests was to reduce the plutonium levels from several hundreds of pCi/g to between 25 and 75 pCi/g and the thorium from a couple hundred pCi/g to less than 5 pCi/g. The results of these four tests are presented along with a discussion of the operating parameters and the lessons learned relating to full scale implementation at Mound as well as other potential applications of this process

A national biomedical tracer facility (NBTF)

International Nuclear Information System (INIS)

Erb, D.E.; Moody, D.; Peterson, E.; Mausner, L.; Atcher, R.

1991-01-01

The production, supply, and sale of isotopes and related services originating in Department of Energy production and research facilities has been a long-standing activity of DOE and predecessor organizations (AEC and ERDA). The authority for this activity is derived from the Atomic Energy Act of 1954, as amended. Stable isotopes and radioisotopes, together with related services, are now being produced in many DOE production and research facilities at several DOE installations which presently include: Argonne National Laboratory (ANL), Brookhaven National Laboratory (BNL), EG ampersand G Mound Laboratories (Mound), Idaho National Engineering Laboratory (INEL), Los Alamos National Laboratory (LANL), Oak Ridge National Laboratory (ORNL), Westinghouse Hanford Company (WHC), and the Pacific Northwest Laboratories (PNL) at Richland, Washington. The products and services are, in many instances, unique in that their production and processing can be performed only in production and research facilities owned by, and operated for, DOE. In some instances, DOE is the sole supplier of such isotope products and services in the Western World

Subtelomeric deletion of chromosome 10p15.3: clinical findings and molecular cytogenetic characterization.

Science.gov (United States)

DeScipio, Cheryl; Conlin, Laura; Rosenfeld, Jill; Tepperberg, James; Pasion, Romela; Patel, Ankita; McDonald, Marie T; Aradhya, Swaroop; Ho, Darlene; Goldstein, Jennifer; McGuire, Marianne; Mulchandani, Surabhi; Medne, Livija; Rupps, Rosemarie; Serrano, Alvaro H; Thorland, Erik C; Tsai, Anne C-H; Hilhorst-Hofstee, Yvonne; Ruivenkamp, Claudia A L; Van Esch, Hilde; Addor, Marie-Claude; Martinet, Danielle; Mason, Thornton B A; Clark, Dinah; Spinner, Nancy B; Krantz, Ian D

2012-09-01

We describe 19 unrelated individuals with submicroscopic deletions involving 10p15.3 characterized by chromosomal microarray (CMA). Interestingly, to our knowledge, only two individuals with isolated, submicroscopic 10p15.3 deletion have been reported to date; however, only limited clinical information is available for these probands and the deleted region has not been molecularly mapped. Comprehensive clinical history was obtained for 12 of the 19 individuals described in this study. Common features among these 12 individuals include: cognitive/behavioral/developmental differences (11/11), speech delay/language disorder (10/10), motor delay (10/10), craniofacial dysmorphism (9/12), hypotonia (7/11), brain anomalies (4/6) and seizures (3/7). Parental studies were performed for nine of the 19 individuals; the 10p15.3 deletion was de novo in seven of the probands, not maternally inherited in one proband and inherited from an apparently affected mother in one proband. Molecular mapping of the 19 individuals reported in this study has identified two genes, ZMYND11 (OMIM 608668) and DIP2C (OMIM 611380; UCSC Genome Browser), mapping within 10p15.3 which are most commonly deleted. Although no single gene has been identified which is deleted in all 19 individuals studied, the deleted region in all but one individual includes ZMYND11 and the deleted region in all but one other individual includes DIP2C. There is not a clearly identifiable phenotypic difference between these two individuals and the size of the deleted region does not generally predict clinical features. Little is currently known about these genes complicating a direct genotype/phenotype correlation at this time. These data however, suggest that ZMYND11 and/or DIP2C haploinsufficiency contributes to the clinical features associated with 10p15 deletions in probands described in this study. Copyright © 2012 Wiley Periodicals, Inc.

Heart defects and other features of the 22q11 distal deletion syndrome

DEFF Research Database (Denmark)

Fagerberg, Christina Ringmann; Graakjaer, Jesper; Heinl, Ulrike D

2013-01-01

patients with 22q11 distal deletions, of whom two have complex congenital heart malformation, thus broadening the phenotypic spectrum. We compare cardiac malformations reported in 22q11 distal deletion to those reported in the common 22q11 deletion syndrome. We also review the literature for patients...... with 22q11 distal deletions, and discuss the possible roles of haploinsufficiency of the MAPK1 gene. We find the most frequent features in 22q11 distal deletion to be developmental delay or learning disability, short stature, microcephalus, premature birth with low birth weight, and congenital heart...... malformation ranging from minor anomalies to complex malformations. Behavioral problems are also seen in a substantial portion of patients. The following dysmorphic features are relatively common: smooth philtrum, abnormally structured ears, cleft palate/bifid uvula, micro-/retrognathia, upslanting palpebral...

Seven gene deletions in seven days

DEFF Research Database (Denmark)

Ingemann Jensen, Sheila; Lennen, Rebecca; Herrgard, Markus

2015-01-01

Generation of multiple genomic alterations is currently a time consuming process. Here, a method was established that enables highly efficient and simultaneous deletion of multiple genes in Escherichia coli. A temperature sensitive plasmid containing arabinose inducible lambda Red recombineering ...

The frequency of previously undetectable deletions involving 3' Exons of the PMS2 gene.

Science.gov (United States)

Vaughn, Cecily P; Baker, Christine L; Samowitz, Wade S; Swensen, Jeffrey J

2013-01-01

Lynch syndrome is characterized by mutations in one of four mismatch repair genes, MLH1, MSH2, MSH6, or PMS2. Clinical mutation analysis of these genes includes sequencing of exonic regions and deletion/duplication analysis. However, detection of deletions and duplications in PMS2 has previously been confined to Exons 1-11 due to gene conversion between PMS2 and the pseudogene PMS2CL in the remaining 3' exons (Exons 12-15). We have recently described an MLPA-based method that permits detection of deletions of PMS2 Exons 12-15; however, the frequency of such deletions has not yet been determined. To address this question, we tested for 3' deletions in 58 samples that were reported to be negative for PMS2 mutations using previously available methods. All samples were from individuals whose tumors exhibited loss of PMS2 immunohistochemical staining without concomitant loss of MLH1 immunostaining. We identified seven samples in this cohort with deletions in the 3' region of PMS2, including three previously reported samples with deletions of Exons 13-15 (two samples) and Exons 14-15. Also detected were deletions of Exons 12-15, Exon 13, and Exon 14 (two samples). Breakpoint analysis of the intragenic deletions suggests they occurred through Alu-mediated recombination. Our results indicate that ∼12% of samples suspected of harboring a PMS2 mutation based on immunohistochemical staining, for which mutations have not yet been identified, would benefit from testing using the new methodology. Copyright © 2012 Wiley Periodicals, Inc.

Deletion Analysis Of The Duchenne/Becker Muscular Dystrophy Gene Using Multiplex Polymerase Chain Reaction

Directory of Open Access Journals (Sweden)

Dastur P

2004-01-01

Full Text Available The diagnosis of Duchenna Muscular Dystrophy (DMD and Becker Muscular Dystorphy (BMD is mainly based on clinical profile, serum CPK values, muscle biopsy and immunostaining for dystrophin. This was done in 100 unrelated patients using 19 exons including the promoter region in two sets of multiplex polymerase chain reaction (PCR. These primers amplify most of the exons in the deletion prone ′hot spot′ regions allowing determinations of deletion end points. Intragenic deletions were detected in 74 patients indicating that the use of PCR- based assays will allow deletion detection help in prenatal diagnosis for most of the DMD/BMD patients. The frequency of deletions observed in the present study was 74%.

Submicroscopic deletions at the WAGR locus, revealed by nonradioactive in situ hybridization.

OpenAIRE

Fantes, J A; Bickmore, W A; Fletcher, J M; Ballesta, F; Hanson, I M; van Heyningen, V

1992-01-01

Fluorescence in situ hybridization (FISH) with biotin-labeled probes mapping to 11p13 has been used for the molecular analysis of deletions of the WAGR (Wilms tumor, aniridia, genitourinary abnormalities, and mental retardation) locus. We have detected a submicroscopic 11p13 deletion in a child with inherited aniridia who subsequently presented with Wilms tumor in a horseshoe kidney, only revealed at surgery. The mother, who has aniridia, was also found to carry a deletion including both the ...

Clinical and molecular consequences of exon 78 deletion in DMD gene.

Science.gov (United States)

Traverso, Monica; Assereto, Stefania; Baratto, Serena; Iacomino, Michele; Pedemonte, Marina; Diana, Maria Cristina; Ferretti, Marta; Broda, Paolo; Minetti, Carlo; Gazzerro, Elisabetta; Madia, Francesca; Bruno, Claudio; Zara, Federico; Fiorillo, Chiara

2018-03-19

We present a 13-year-old patient with persistent increase of serum Creatine Kinase (CK) and myalgia after exertion. Skeletal muscle biopsy showed marked reduction of dystrophin expression leading to genetic analysis of DMD gene by MLPA, which detected a single deletion of exon 78. To the best of our knowledge, DMD exon 78 deletion has never been described in literature and, according to prediction, it should lead to loss of reading frame in the dystrophin gene. To further assess the actual effect of exon 78 deletion, we analysed cDNA from muscle mRNA. This analysis confirmed the absence of 32 bp of exon 78. Exclusion of exon 78 changes the open reading frame of exon 79 and generate a downstream stop codon, producing a dystrophin protein of 3703 amino acids instead of 3685 amino acids. Albeit loss of reading frame usually leads to protein degradation and severe phenotype, in this case, we demonstrated that deletion of DMD exon 78 can be associated with a functional protein able to bind DGC complex and a very mild phenotype. This study adds a novel deletion in DMD gene in human and helps to define the compliance between maintaining/disrupting the reading frame and clinical form of the disease.

Mortality among workers at the Mound Facility: A preliminary report

International Nuclear Information System (INIS)

Reyes, M.; Wilkinson, G.S.; Tietjen, G.L.; Wiggs, L.D.; Galke, W.A.

1991-04-01

Mortality among 4,697 white males who were employed at the Mound Facility between 1943 and 1979 was compared with expected mortality based on US white male death rates. Standardized mortality ratios (SMRs) of 96 were observed for both all causes and all cancers. SMRs for digestive cancers and unintentional injuries were significantly less than 100. No SMR was significantly greater than 100 for these workers. A significantly elevated lung cancer SMR was observed for the subcohort of workers employed from 1943--1959, a period during which polonium-210 was processed at the plant. To determine the potential impact of wartime selection factors, this time period was further divided into two periods, 1943--1945 and 1946--1959. In the 1943--1945 period, the SMR for lung cancer was 204 (90% CI = 140, 290), while in the later period the lung cancer SMR was 105 (90% CI = 77, 140). Similar results were observed for all causes, all cancers, cancers of the rectum, nonmalignant respiratory diseases, and all injuries for which the SMRs were elevated during the wartime period but were not elevated after the war. Additional analyses considering workers hired in the period 1960--1979, during which plutonium-238 was processed at the facility, yielded little information. Generally, a strong healthy worker effect was observed and was attributed to the limited follow-up time and small numbers of deaths among this subcohort. 22 refs., 9 tabs

Prenatal Diagnosis and Molecular Analysis of a Large Novel Deletion (- -JS) Causing α0-Thalassemia.

Science.gov (United States)

Cao, Jinru; He, Shuzhen; Pu, Yudong; Liu, Jingjing; Liu, Fuping; Feng, Jun

α-Thalassemia (α-thal) is a very common single gene hereditary disease caused by large deletions or point mutations of the α-globin gene cluster in tropical and subtropical regions of the world. Here, we report for the first time, a novel large α-thal deletion in a Chinese family from Jiangsu Province, People's Republic of China (PRC), which removes almost the entire α2 and α1 genes from the α-globin gene cluster. Thus, it was named the Jiangsu deletion (- - JS ) on the α-globin gene cluster causing α 0 -thal. Heterozygotes for this deletion showed an α-thal trait phenotype with reduced mean corpuscular volume (MCV) and mean corpuscular hemoglobin (Hb) (MCH) levels. The sequencing results showed that a 2538 bp deletion (NG_000006.1: g.35801_38338) existed in this novel genotype on the basis of -α 4.2 (leftward), indicating a deletion of about 6.8 kb from the α-globin cluster. In addition, a 29 bp sequence was inserted into the deletion during the recombination events that led to this deletion. Through pedigree analysis, we knew that the proband inherited the novel allele from his mother.

Induction of Mitochondrial DNA Deletion by Ionizing Radiation in Human Lung Fibroblast IMR-90 Cells

International Nuclear Information System (INIS)

Eom, Hyeon Soo; Jung, U Hee; Park, Hae Ran; Jo, Sung Kee

2009-01-01

Mitochondrial DNA (mtDNA) deletion is a well-known marker for oxidative stress and aging and also contributes to their unfavorable effects in cultured cells and animal tissues. This study was conducted to investigate the effect of ionizing radiation (IR) on mtDNA deletion and the involvement of reactive oxygen species (ROS) in this process in human lung fibroblast (IMR-90) cells. Young IMR-90 cells at population doubling (PD) 39 were irradiated with 137 Cs -rays and the intracellular ROS level was determined by 2',7'-dichlorofluorescein diacetate (DCFH-DA) and mtDNA common deletion (4977bp) was detected by nested PCR. Old cells at PD 55 and H 2 O 2 -treated young cells were compared as the positive control. IR increased the intracellular ROS level and mtDNA 4977 bp deletion in IMR-90 cells dose-dependently. The increases of ROS level and mtDNA deletion were also observed in old cells and H 2 O 2 -treated young cells. To confirm the increased ROS level is essential for mtDNA deletion in irradiated cells, the effects of N-acetylcysteine (NAC) on IRinduced ROS and mtDNA deletion were examined. 5 mM NAC significantly attenuated the IR-induced ROS increase and mtDNA deletion. These results suggest that IR induces the mtDNA deletion and this process is mediated by ROS in IMR-90 cells

Rare copy number deletions predict individual variation in intelligence.

Directory of Open Access Journals (Sweden)

Ronald A Yeo

2011-01-01

Full Text Available Phenotypic variation in human intellectual functioning shows substantial heritability, as demonstrated by a long history of behavior genetic studies. Many recent molecular genetic studies have attempted to uncover specific genetic variations responsible for this heritability, but identified effects capture little variance and have proven difficult to replicate. The present study, motivated an interest in "mutation load" emerging from evolutionary perspectives, examined the importance of the number of rare (or infrequent copy number variations (CNVs, and the total number of base pairs included in such deletions, for psychometric intelligence. Genetic data was collected using the Illumina 1MDuoBeadChip Array from a sample of 202 adult individuals with alcohol dependence, and a subset of these (N = 77 had been administered the Wechsler Abbreviated Scale of Intelligence (WASI. After removing CNV outliers, the impact of rare genetic deletions on psychometric intelligence was investigated in 74 individuals. The total length of the rare deletions significantly and negatively predicted intelligence (r = -.30, p = .01. As prior studies have indicated greater heritability in individuals with relatively higher parental socioeconomic status (SES, we also examined the impact of ethnicity (Anglo/White vs. Other, as a proxy measure of SES; these groups did not differ on any genetic variable. This categorical variable significantly moderated the effect of length of deletions on intelligence, with larger effects being noted in the Anglo/White group. Overall, these results suggest that rare deletions (between 5% and 1% population frequency or less adversely affect intellectual functioning, and that pleotropic effects might partly account for the association of intelligence with health and mental health status. Significant limitations of this research, including issues of generalizability and CNV measurement, are discussed.

Rare Copy Number Deletions Predict Individual Variation in Intelligence

Science.gov (United States)

Yeo, Ronald A.; Gangestad, Steven W.; Liu, Jingyu; Calhoun, Vince D.; Hutchison, Kent E.

2011-01-01

Phenotypic variation in human intellectual functioning shows substantial heritability, as demonstrated by a long history of behavior genetic studies. Many recent molecular genetic studies have attempted to uncover specific genetic variations responsible for this heritability, but identified effects capture little variance and have proven difficult to replicate. The present study, motivated an interest in “mutation load” emerging from evolutionary perspectives, examined the importance of the number of rare (or infrequent) copy number variations (CNVs), and the total number of base pairs included in such deletions, for psychometric intelligence. Genetic data was collected using the Illumina 1MDuoBeadChip Array from a sample of 202 adult individuals with alcohol dependence, and a subset of these (N = 77) had been administered the Wechsler Abbreviated Scale of Intelligence (WASI). After removing CNV outliers, the impact of rare genetic deletions on psychometric intelligence was investigated in 74 individuals. The total length of the rare deletions significantly and negatively predicted intelligence (r = −.30, p = .01). As prior studies have indicated greater heritability in individuals with relatively higher parental socioeconomic status (SES), we also examined the impact of ethnicity (Anglo/White vs. Other), as a proxy measure of SES; these groups did not differ on any genetic variable. This categorical variable significantly moderated the effect of length of deletions on intelligence, with larger effects being noted in the Anglo/White group. Overall, these results suggest that rare deletions (between 5% and 1% population frequency or less) adversely affect intellectual functioning, and that pleotropic effects might partly account for the association of intelligence with health and mental health status. Significant limitations of this research, including issues of generalizability and CNV measurement, are discussed. PMID:21298096

Angiotensin-converting enzyme insertion/deletion gene ...

Indian Academy of Sciences (India)

Angiotensin-converting enzyme insertion/deletion gene polymorphism in cystic fibrosis patients. Sabrine Oueslati Sondess Hadj Fredj Hajer Siala Amina Bibi Hajer Aloulou Lamia Boughamoura Khadija Boussetta Sihem Barsaoui Taieb Messaoud. Research Note Volume 95 Issue 1 March 2016 pp 193-196 ...

Angiotensin Converting Enzyme Insertion/Deletion Gene ...

African Journals Online (AJOL)

Angiotensin Converting Enzyme Insertion/Deletion Gene Polymorphism: An Observational Study among Diabetic Hypertensive Subjects in Malaysia. ... Methods: The pharmacological effect of ACE inhibition on mean arterial pressure (MAP) and glomerular filtration rate (GFR) were observed among a total of 62 subjects for ...

Acquired retinal pigmentary degeneration in a child with 13q deletion syndrome.

Science.gov (United States)

Aguilera, Zenia P; Belin, Peter J; Cavuoto, Kara M; Jayakar, Parul; McKeown, Craig A

2015-10-01

Orbeli syndrome, or 13q deletion syndrome, is a rare condition caused by a distal deletion in the long arm of chromosome 13. The syndrome is characterized by severe physical malformations and developmental delays and has been associated with numerous ocular manifestations. We report the case of a 10-year-old boy with 13q deletion syndrome, who was evaluated for impaired vision and found to have bilateral retinal pigmentary changes resembling those seen in retinitis pigmentosa. There has only been one other case of retinal pigment variation in association with 13q deletion syndrome; however, this represents the first case of bilateral symmetric retinal pigmentary changes with corresponding rod and cone dysfunction on electroretinography. Copyright © 2015 American Association for Pediatric Ophthalmology and Strabismus. Published by Elsevier Inc. All rights reserved.

Interdisciplinary landscape research in a medieval mound in one of the oldest Dutch towns, Vlaardingen, the Netherlands

Science.gov (United States)

de Ridder, Tim; Kluiving, Sjoerd; van Dasselaar, Marcel

2013-04-01

In Medieval times the city of Vlaardingen (the Netherlands) was strategically located on the confluence of three rivers, the Meuse, the Merwede and the Vlaarding. A church of early 8th century was already located here. In a short period of time Vlaardingen developed into an international trading place, the most important place in the former county of Holland. Starting from the 11th century the river Meuse threatened to flood the settlement, and as a reaction to it inhabitants started to raise the surface. This resulted eventually in an enormous mound, surface: 200 by 250 meter, built up in a four to five meter thick sequence of clay and manure in which organic rests of former occupation are extremely well preserved, e.g. wooden posts, mesh walls, but also leather objects. Early 2002 graves were found in the city centre, dating 1000-1050, in which not only the wooden coffins, but also the straw that covered the deceased. In human teeth DNA appeared to be well preserved, classified as the oldest in the nation, turning the church hill into a large database of human DNA. To secure the future of this vulnerable soil archive currently an extensive interdisciplinary research (mechanical drilling, grain size, TGA, archeological remains, osteology, hydrology, dating methods, micromorphology, microfauna, molluscs, diatoms) has started in 2011 to gain knowledge on the internal structure of the mound as well as on the well-preserved nature of the archaeological evidence. In this presentation the results of this large-scale project are demonstrated in a number of cross-sections with interrelated geological and archaeological stratification. Results of GSA (including end-member analysis EMMA), TGA, XRF and micromorphology analyses are presented. Distinction between natural and anthropogenic layering is made on the occurrence of chemical elements phosphor and potassium. Results of this research are also applied in the construction of the 3D model of the subsurface (this session