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Sample records for mottle virus em

  1. Uncoating Mechanism of Carnation Mottle Virus Revealed by Cryo-EM Single Particle Analysis.

    Science.gov (United States)

    Wang, Chun-Yan; Zhang, Qin-Fen; Gao, Yuan-Zhu; Xie, Li; Li, Hong-Mei; Hong, Jian; Zhang, Chuan-Xi

    2015-01-01

    Genome uncoating is a prerequisite for the successful infection of plant viruses in host plants. Thus far, little is known about the genome uncoating of the Carnation mottle virus (CarMV). Here, we obtained two reconstructions of CarMV at pH7 in the presence (Ca-pH7) and absence (EDTA-pH7) of calcium ions by Cryo-EM single particle analysis, which achieved 6.4 Å and 8 Å resolutions respectively. Our results showed that chelation of the calcium ions under EDTA-pH7 resulted in reduced interaction between the subunits near the center of the asymmetric unit but not overall size change of the viral particles, which indicated that the role of the calcium ions in CarMV was not predominantly for the structural preservation. Part of the genomic RNA closest to the capsid was found to be located near the center of the asymmetric unit, which might result from the interaction between genomic RNA and Lys194 residues. Together with the electrostatic potential analysis on the inner surface of the asymmetric unit, the reduced interaction near the center of the asymmetric unit under EDTA-pH7 suggested that the genome release of CarMV might be realized through the center of the asymmetric unit.

  2. Insight into the three-dimensional structure of maize chlorotic mottle virus revealed by Cryo-EM single particle analysis.

    Science.gov (United States)

    Wang, Chun-Yan; Zhang, Qin-Fen; Gao, Yuan-Zhu; Zhou, Xue-Ping; Ji, Gang; Huang, Xiao-Jun; Hong, Jian; Zhang, Chuan-Xi

    2015-11-01

    Maize chlorotic mottle virus (MCMV) is the only member of the Machlomovirus genus in the family Tombusviridae. Here, we obtained the Cryo-EM structure of MCMV by single particle analysis with most local resolution at approximately 4 Å. The Cα backbone was built based on residues with bulky side chains. The resolved C-terminus of the capsid protein subunit and obvious openings at the 2-fold axis demonstrated the compactness of the asymmetric unit, which indicates an important role in the stability of MCMV. The Asp116 residue from each subunit around the 5-fold and 3-fold axes contributed to the negative charges in the centers of the pentamers and hexamers, which might serve as a solid barrier against the leakage of genomic RNA. Finally, the loops most exposed on the surface were analyzed and are proposed to be potential functional sites related to MCMV transmission.

  3. Complete genome sequence of arracacha mottle virus.

    Science.gov (United States)

    Orílio, Anelise F; Lucinda, Natalia; Dusi, André N; Nagata, Tatsuya; Inoue-Nagata, Alice K

    2013-01-01

    Arracacha mottle virus (AMoV) is the only potyvirus reported to infect arracacha (Arracacia xanthorrhiza) in Brazil. Here, the complete genome sequence of an isolate of AMoV was determined to be 9,630 nucleotides in length, excluding the 3' poly-A tail, and encoding a polyprotein of 3,135 amino acids and a putative P3N-PIPO protein. Its genomic organization is typical of a member of the genus Potyvirus, containing all conserved motifs. Its full genome sequence shared 56.2 % nucleotide identity with sunflower chlorotic mottle virus and verbena virus Y, the most closely related viruses.

  4. Brugmansia suaveolens mottle virus, a novel potyvirus causing leaf mottling of Brugmansia suaveolens in Brazil.

    Science.gov (United States)

    Lucinda, N; Nagata, T; Inoue-Nagata, A K; Salaroli, R B; Kitajima, E W

    2008-01-01

    A potyvirus was isolated from Brugmansia suaveolens showing leaf mottling and tentatively named Brugmansia suaveolens mottle virus (BsMoV). The virus (isolate Bs-Campinas) could infect some solanaceous plants and two Chenopodium species, and was transmitted by aphids. Symptomatic leaves contained flexuous particles and cylindrical inclusions. RT-PCR amplification using potyvirus universal primers produced a DNA fragment of 1851 nt (3' terminal genomic region), which shared 71% nucleotide identity with Pepper mottle virus, the best-matched potyvirus sequence. Since this identity value is below the threshold currently used to discriminate Potyvirus species, Brugmansia suaveolens mottle virus most likely represents a new Potyvirus species.

  5. Insect Vectors of Rice Yellow Mottle Virus

    Directory of Open Access Journals (Sweden)

    Augustin Koudamiloro

    2015-01-01

    Full Text Available Rice yellow mottle virus (RYMV is the major viral constraint to rice production in Africa. RYMV was first identified in 1966 in Kenya and then later in most African countries where rice is grown. Several studies have been conducted so far on its evolution, pathogenicity, resistance genes, and especially its dissemination by insects. Many of these studies showed that, among RYMV vectors, insects especially leaf-feeders found in rice fields are the major source of virus transmission. Many studies have shown that the virus is vectored by several insect species in a process of a first ingestion of leaf material and subsequent transmission in following feedings. About forty insect species were identified as vectors of RYMV since 1970 up to now. They were essentially the beetles, grasshoppers, and the leafhoppers. For this review, we presented the chronology of their identification. Also, the biology, ecology, host range, distribution, and caused damage of these insects were briefly summarized.

  6. Complete nucleotide sequence of a virus associated with rusty mottle disease of sweet cherry (Prunus avium).

    Science.gov (United States)

    Villamor, D V; Druffel, K L; Eastwell, K C

    2013-08-01

    Cherry rusty mottle is a disease of sweet cherries first described in 1940 in western North America. Because of the graft-transmissible nature of the disease, a viral nature of the disease was assumed. Here, the complete genomic nucleotide sequences of virus isolates from two trees expressing cherry rusty mottle disease symptoms are characterized; the virus is designated cherry rusty mottle associated virus (CRMaV). The biological and molecular characteristics of this virus in comparison to those of cherry necrotic rusty mottle virus (CNRMV) and cherry green ring mottle virus (CGRMV) are described. CRMaV was subsequently detected in additional sweet cherry trees expressing symptoms of cherry rusty mottle disease.

  7. Characterization of cowpea chlorotic mottle virus and its assembly

    NARCIS (Netherlands)

    Verduin, B.J.M.

    1978-01-01

    This thesis decribes the conditions for isolation of cowpea chlorotic mottle virus (CCMV), its ribonucleic acid (RNA) and the coat protein, the characterization of the virus and its constituents (chapter 3, 4 and 5) and the dissociation and assembly behaviour of the virus (chapter 6 and 7).The aim o

  8. Ocorrência generalizada do Lettuce mottle virus em três regiões produtoras de alface comercial do Estado de São Paulo Occurrence of Lettuce mottle virus on three lettuce producing areas from São Paulo State

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    Renate Krause-Sakate

    2008-02-01

    Full Text Available Os sequivírus são vírus isométricos transmitidos por afídeos. Lettuce mottle virus (LeMoV, um provável sequivirus foi descrito no Brasil em 1982 e causa sintomas de mosaico semelhantes aos observados pelo Lettuce mosaic virus (LMV. Um levantamento para ocorrência do LeMoV nos campos de produção de alface de três diferentes regiões do Estado de São Paulo (Mogi das Cruzes, Campinas e Bauru foi realizado durante 2002 a 2005. RNA total foi extraído e utilizado na detecção, em RT-PCR, com oligonucleotídeos específicos para o LeMoV. Do total de 1362 amostras, 137 (10,05% foram positivas para o LeMoV. Infecção mista com o LMV foi verificada em 43 amostras (31,4%. Foi verificada a ocorrência do LeMoV nas três diferentes regiões analisadas, porém sua ocorrência foi baixa nas diferentes épocas do ano.Sequiviruses are isometric aphid-borne plant viruses. Lettuce mottle virus (LeMoV, a putative sequivirus was first described in Brazil on 1982 causing similar mosaic symptoms as Lettuce mosaic virus (LMV. A survey for the occurrence of LeMoV on open field conditions was carried out during 2002 to 2005 on Mogi das Cruzes, Campinas and Bauru in São Paulo state. Total RNA was extracted and used on RT-PCR with specific LeMoV primers. On 1362 samples tested, 137 (10,05% were positive for LeMoV. Mixed infections with LMV was observed on 43 samples (31,4%. The presence of LeMoV was observed in the three different regions, but with low incidence during the year.

  9. Spectroscopy on the assembly of cowpea chlorotic mottle virus

    NARCIS (Netherlands)

    Kruese, J.

    1979-01-01

    This thesis describes the characterization of cowpea chlorotic mottle virus (CCMV) by using spectroscopic techniques. In chapter one and two the main properties of CCMV, which belongs to the bromoviruses, are summarized. The application of spectroscopic techniques in the study of other viruses is re

  10. Chlorotic mottle of bean (Phaseolus vulgaris L.)

    NARCIS (Netherlands)

    Jayasinghe, W.U.

    1982-01-01

    For the past years there have been outbreaks of a disease of bean ( <em>Phaseolus vulgarisem> L.) in Colombia called bean chlorotic mottle. The etiology of bean chlorotic mottle was not known, but the disease was generally believed to be incited by the same whitefly-transmitted virus

  11. First Report of Carnation vein mottle virus Infecting Dianthus amurensis in China

    Science.gov (United States)

    Tomato mottle mosaic virus (ToMMV), a tentative member in genus Tobamovirus, was first reported from a greenhouse tomato sample collected in Mexico in 2013 (1). In August 2013, foliar mottle, shrinking and necrosis were observed on pepper plants in several vegetable greenhouses of Lhasa, Tibet Auton...

  12. Characterization and ecological aspects of rice yellow mottle virus in Kenya

    NARCIS (Netherlands)

    Bakker, W.

    1974-01-01

    Rice yellow mottle virus(RYMV)is the causal pathogen of yellow mottle of rice in the area around Kisumu near Lake Victoria in Kenya. Affected plants show a yellow or orange discolouration of the leaves, reduced tillering and stunting of the plants, and sterility of the flowers. The results

  13. Inheritance of tolerance to Cowpea Mild Mottle Virus in soybean

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    Carlos A Arrabal Arias

    2015-08-01

    Full Text Available Soybean stem necrosis is caused by Cowpea mild mottle virus (CPMMV and it has been recognized as an emerging and economically important disease in Brazil. No resistant, but only tolerant cultivars have been identified so far, and their genetic control is still unknown. To investigate the inheritance of soybean tolerance to CPMMV, two crosses between tolerant cultivars (BRS 133 x BRSMT Pintado, and between a susceptible (CD 206 and a tolerant cultivar (BRSMT Pintado were carried out to obtain F2 and F2:3 generations. Quantitative and qualitative analyses applied to the data from greenhouse evaluations showed that there are at least two distinct major genes determining tolerance to CPMMV, one in the soybean cultivar BRS 133 and another in the cultivar BRSMT Pintado, with predominance of additive genetic effects and heritability levels that allow for efficient selection based on early generation means

  14. Structural transitions in Cowpea chlorotic mottle virus (CCMV)

    Science.gov (United States)

    Liepold, Lars O.; Revis, Jennifer; Allen, Mark; Oltrogge, Luke; Young, Mark; Douglas, Trevor

    2005-12-01

    Viral capsids act as molecular containers for the encapsulation of genomic nucleic acid. These protein cages can also be used as constrained reaction vessels for packaging and entrapment of synthetic cargos. The icosahedral Cowpea chlorotic mottle virus (CCMV) is an excellent model for understanding the encapsulation and packaging of both genomic and synthetic materials. High-resolution structural information of the CCMV capsid has been invaluable for evaluating structure-function relationships in the assembled capsid but does not allow insight into the capsid dynamics. The dynamic nature of the CCMV capsid might play an important role in the biological function of the virus. The CCMV capsid undergoes a pH and metal ion dependent reversible structural transition where 60 separate pores in the capsid open or close, exposing the interior of the protein cage to the bulk medium. In addition, the highly basic N-terminal domain of the capsid, which is disordered in the crystal structure, plays a significant role in packaging the viral cargo. Interestingly, in limited proteolysis and mass spectrometry experiments the N-terminal domain is the first part of the subunit to be cleaved, confirming its dynamic nature. Based on our fundamental understanding of the capsid dynamics in CCMV, we have utilized these aspects to direct packaging of a range of synthetic materials including drugs and inorganic nanoparticles.

  15. Structural determinants of tobacco vein mottling virus protease substrate specificity.

    Science.gov (United States)

    Sun, Ping; Austin, Brian P; Tözsér, József; Waugh, David S

    2010-11-01

    Tobacco vein mottling virus (TVMV) is a member of the Potyviridae, one of the largest families of plant viruses. The TVMV genome is translated into a single large polyprotein that is subsequently processed by three virally encoded proteases. Seven of the nine cleavage events are carried out by the NIa protease. Its homolog from the tobacco etch virus (TEV) is a widely used reagent for the removal of affinity tags from recombinant proteins. Although TVMV protease is a close relative of TEV protease, they exhibit distinct sequence specificities. We report here the crystal structure of a catalytically inactive mutant TVMV protease (K65A/K67A/C151A) in complex with a canonical peptide substrate (Ac-RETVRFQSD) at 1.7-Å resolution. As observed in several crystal structures of TEV protease, the C-terminus (∼20 residues) of TVMV protease is disordered. Unexpectedly, although deleting the disordered residues from TEV protease reduces its catalytic activity by ∼10-fold, an analogous truncation mutant of TVMV protease is significantly more active. Comparison of the structures of TEV and TVMV protease in complex with their respective canonical substrate peptides reveals that the S3 and S4 pockets are mainly responsible for the differing substrate specificities. The structure of TVMV protease suggests that it is less tolerant of variation at the P1' position than TEV protease. This conjecture was confirmed experimentally by determining kinetic parameters k(cat) and K(m) for a series of oligopeptide substrates. Also, as predicted by the cocrystal structure, we confirm that substitutions in the P6 position are more readily tolerated by TVMV than TEV protease.

  16. Complete Genome Sequence of a Carnation Mottle Virus Infecting Hop Plants

    OpenAIRE

    Jo, Yeonhwa; Choi, Hoseong; Cho, Won Kyong

    2015-01-01

    The Carnation mottle virus (CarMV) is a single positive-strand RNA virus belonging to the genus Carmovirus. The major natural host for CarMV is the carnation. In this study, using transcriptome data, we provide for the first time a nearly complete genome sequence of CarMV infecting hop plants.

  17. Complete Genome Sequence of a Tomato-Infecting Tomato Mottle Mosaic Virus in New York

    OpenAIRE

    Padmanabhan, Chellappan; Zheng, Yi; Li, Rugang; Martin, Gregory B.; Fei, Zhangjun; Ling, Kai-Shu

    2015-01-01

    The complete genome sequence of an isolate of tomato mottle mosaic virus (ToMMV) infecting tomatoes in New York was obtained using small RNA (sRNA) deep sequencing. ToMMV_NY-13 shared 99% sequence identity with isolates from Mexico and Florida. Broader distribution of this emerging virus is a cause for concern to the tomato industry.

  18. Effects of Cowpea mottle virus and Cucumber mosaic virus on six Soybean (Glycine max L. cultivars

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    Aliyu Taiye H

    2009-12-01

    Full Text Available Abstract The study was carried out to determine the comparative pathogenic response of six cultivars of soybean; TGx 1844-18E, TGx 1448-2E, TGx 1910-8F, TGx 1019-2EN, TGx 1910-8F and TGx 1876-4E to single and mixed infections with cowpea mottle virus and cucumber mosaic virus. The experiment was conducted in the screenhouse at the crop production pavilion, Faculty of Agriculture, University of Ilorin, Ilorin, Kwara state Nigeria. The results of the experiment revealed that all soybean cultivars were susceptible to single and mixed infection of the two viruses but to seemingly different extent. The single infection with cowpea mottle virus (CMeV, however, caused the most severe symptoms on the soybean cultivars. Cucumber mosaic virus (CMV alone was not as severe as the CMeV. The mixed infection of CMeV and CMV did not cause higher severity than CMeV alone indicating that there was little or no synergistic effect between the two viruses on soybean.

  19. Cucumber Mosaic Virus and Chili Veinal Mottle Virus Infection on Growth and Yield Component of Chilli

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    ENDANG NURHAYATI

    2006-06-01

    Full Text Available A research was undergone to study the effect of single and double infection of Cucumber Mosaic Virus (CMV and Chili Veinal Mottle Virus (ChiVMV on the growth and yield of five chilli cultivars, i.e. Prabu, Taro, Jatilaba, Laris, and Keriting Bogor. Mechanical inoculation was conducted to transmit the virus. Infection of the virus was then confirmed with DAS-ELISA. Severe symptom was observed on plant given double infection compared to those given single infection. The rate of plant growth and the amount and weight of fruits were reduced. The type of interaction between CMV and ChiVMV on most chilli cultivar can be considered as interference and additive. Synergism interaction was only observed on cultivar Laris. Based on symptom expression and reduction on yield, it can be concluded that all chilli cultivars used in this study could not hold up the virus infection.

  20. Identification of Cherry green ring mottle virus on Sweet Cherry Trees in Korea

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    In-Sook Cho

    2013-12-01

    Full Text Available During the 2012 growing season, 154 leaf samples were collected from sweet cherry trees in Hwaseong, Pyeongtaek, Gyeongju, Kimcheon, Daegu, Yeongju and Eumseong and tested for the presence of Cherry green ring mottle virus (CGRMV. PCR products of the expected size (807 bp were obtained from 6 samples. The PCR products were cloned and sequenced. The nucleotide sequences of the clones showed over 88% identities to published coat protein sequences of CGRMV isolates in the GenBank database. The sequences of CGRMV isolates, CGR-KO 1−6 shared 98.8 to 99.8% nucleotide and 99.6 to 100% amino acid similarities. Phylogenetic analysis indicated that the Korean CGRMV isolates belong to the group II of CGRMV coat protein genes. The CGRMV infected sweet cherry trees were also tested for Apple chlorotic leaf spot virus (ACLSV, Apple mosaic virus (ApMV, Cherry necrotic rusty mottle virus (CNRMV, Cherry mottle leaf virus (CMLV, Cherry rasp leaf virus (CRLV, Cherry leafroll virus (CLRV, Cherry virus A (CVA, Little cherry virus 1 (LChV1, Prune dwarf virus (PDV and Prunus necrotic ringspot virus (PNRSV by RT-PCR. All of the tested trees were also infected with ACLSV.

  1. Unstable infectivity and abundant viral RNAs associated with strawberry mottle virus

    NARCIS (Netherlands)

    Leone, G.; Lindner, J.L.; Schoen, C.D.

    1995-01-01

    A not yet identified virus (SMoV) associated with the strawberry mottle syndrome was mechanically transmitted from infected Fragaria vesca UC-5 to Chenopodium quinoa and from C. quinoa to Nicotiana benthamiana, N. occidentalis 37B and N. hesperis 67A. C. quinoa, N. benthamiana, and N. occidentalis

  2. Phenotypical and molecular characterization of the Tomato mottle Taino virus-Nicotiana megalosiphon interaction

    NARCIS (Netherlands)

    Collazo, C.; Ramos, P.L.; Chacón, O.; Borroto, C.J.; López, Y.; Pujol, M.; Thomma, B.P.H.J.; Hein, I.; Borrás-Hidalgo, O.

    2005-01-01

    Tomato mottle Taino virus (ToMoTV) infection causes significant yield losses in plants of various Solanaceous species. In this study, the interaction between Nicotiana megalosiphon and ToMoTV was characterized on a phenotypical and molecular basis. In order to isolate genes that are differentially e

  3. Genetic diversity, host range and disease resistance to the emerging Tomato mottle mosaic virus on tomato

    Science.gov (United States)

    Since its first discovery in 2013 in Mexico, Tomato mottle mosaic virus (ToMMV), a new tomato-infecting tobamovirus is now present in a number of countries (i.e., Brazil, China, and Israel) and several states in the U.S. There is little information available on the molecular and biological properti...

  4. Molecular cloning of dsRNAs associated with strawberry mottle virus

    NARCIS (Netherlands)

    Schoen, C.D.; Miglino, R.; Jelkmann, W.; Leone, G.

    1998-01-01

    Strawberry mottle virus was transmitted from Fragaria vesca to Chenopodium quinoa and Nicotiana occidentalis 37B. In all plants, SMoV infection-associated dsRNA was detected but dsRNA patterns showed some differences between the herbaceous hosts. The differences were more evident when the dsRNA prep

  5. Complete Genome Sequence of a Tomato Isolate of Parietaria Mottle Virus from Italy.

    Science.gov (United States)

    Martínez, Carolina; Aramburu, José; Rubio, Luis; Galipienso, Luis

    2015-12-17

    We report here the complete genome sequence of isolate T32 of parietaria mottle virus (PMoV) infecting tomato plants in Turin, Italy, obtained by Sanger sequencing. T32 shares 90.48 to 96.69% nucleotide identity with other two PoMV isolates, CR8 and Pe1, respectively, whose complete genome sequences are available.

  6. First complete genome sequence of an emerging cucumber green mottle mosaic virus isolate in North America

    Science.gov (United States)

    The complete genome sequence (6,423 nt) of an emerging Cucumber green mottle mosaic virus (CGMMV) isolate on cucumber in North America was determined through deep sequencing of sRNA and rapid amplification of cDNA ends. It shares 99% nucleotide sequence identity to the Asian genotype, but only 90% t...

  7. Simultaneous detection of Cherry necrotic rusty mottle virus and Cherry green ring mottle virus using real-time PCR and high resolution melting analysis.

    Science.gov (United States)

    Komorowska, Beata; Fiore, Nicola; Zamorano, Alan; Li, Ruhui

    2014-08-01

    In this study, the real-time PCR assays were combined with high resolution melting (HRM) analysis for the simultaneous detection of Cherry necrotic rusty mottle virus (CNRMV) and Cherry green ring mottle virus (CGRMV) infection in sweet cherry trees. Detection of CNRMV and CGRMV was performed in a real-time PCR using a primer set for both of them or duplex real-time PCR that included one specific primer set for each virus. These two strategies allowed us to confirmed virus infection in all tested samples. In 17 field samples the technique revealed samples positive for CNRMV or CGRMV as well as positive for both viruses. In addition, the HRM analysis made it possible to differentiate clearly between CNRMV and CGRMV. Sequence variations among CNRMV and CGRMV isolates observed from the HRM peaks were confirmed by sequencing. To test the capability to use this method in field, forty one sweet cherry samples were examined by HRM analysis. The HRM data showed that seven samples were positive for CNRMV and three were infected with CGRMV. The results presented in this study indicated that real-time PCR followed by HRM analysis provides sensitive, automated and rapid tool to detect and differentiate between CNRMV and CGRMV isolates.

  8. Occurrence and distribution of pepper veinal mottle virus and cucumber mosaic virus in pepper in Ibadan, Nigeria

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    Arogundade Olawale

    2012-04-01

    Full Text Available Abstract Viral diseases constitute obstacles to pepper production in the world. In Nigeria, pepper plants are primarily affected by pepper veinal mottle virus (PVMV, Cucumber mosaic virus (CMV, Pepper leaf curl Virus (TLCV, Tobacco mosaic virus (TMV, Pepper mottle virus (PMV and a host of other viruses. The experiment was carried out with a diagnostic survey on the experimental field of the National Horticultural Research Institute, Ibadan, Nigeria and on pepper farms in six local government areas within Ibadan Oyo State, Nigeria, forty samples were collected from each of the farms. Diseased samples were obtained from the field and taken to the laboratory for indexing. In ELISA test some of the samples from the pepper farms showed positive reaction to single infection with PVMV (36.79%, CMV (22.14% while some others showed positive reaction to mixed infection of the two viruses (10% but some also negative reaction to PVMV and CMV antisera (31.07.

  9. Molecular and biological characterization of corchorus mottle virus, a new begomovirus from Brazil.

    Science.gov (United States)

    Blawid, Rosana; Fontenele, Rafaela S; Lacorte, Cristiano; Ribeiro, Simone G

    2013-12-01

    A begomovirus infecting Orinoco jute (Corchorus hirtus) from Brazil was characterized. Molecular analysis revealed a bipartite genomic organization, which is typical of the New World begomoviruses. Sequence analysis and phylogenetic data showed that both genomic components have the closest relationship with abutilon mosaic Brazil virus, with an identity of 87.3 % for DNA-A, indicating that this virus is a member of a new begomovirus species for which the name "Corchorus mottle virus" (CoMoV) is proposed. Sida rhombifolia plants inoculated by biolistics with an infectious clone of CoMoV showed systemic vein chlorosis, mottling and leaf deformation symptoms, while Nicotiana benthamiana and tomato plants had symptomless infection. CoMoV is the first corchorus-infecting begomovirus reported in Brazil.

  10. A new aubergine disease caused by a whitefly‐borne strain of Tomato mild mottle virus (TomMMoV)

    National Research Council Canada - National Science Library

    Dombrovsky, A; Sapkota, R; Lachman, O; Pearlsman, M; Antignus, Y

    2013-01-01

    The aims of the present study were to further characterize the causal agent of a new viral disease of aubergines in Israel, first observed in 2003 and tentatively named eggplant mild leaf mottle virus ( EMLMV...

  11. Survey of Cherry necrotic rusty mottle virus and Cherry green ring mottle virus incidence in Korea by Duplex RT-PCR

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    Seung-Yeol Lee

    2014-12-01

    Full Text Available The incidence of Cherry necrotic rusty mottle virus (CNRMV and Cherry green ring mottle virus (CGRMV have recently been occurred in Korea, posing a problem for sweet cherry cultivation. Since infected trees have symptomless leaves or ring-like spots on the pericarp, it is difficult to identify a viral infection. In this study, the incidence of CNRMV and CGRMV in sweet cherry in Gyeongbuk province was surveyed using a newly developed duplex reverse transcriptase polymerase chain reaction (RT-PCR method that can detect both viruses in a single reaction. CNRMV and CGRMV co-infection rates were 29.6%, 53.6%, and 17.6%, respectively, in samples collected from three different sites (Daegu, Gyeongju and Gyeongsan in Gyeongbuk province during 2012 and 2013. This duplex RT-PCR method offers a simple, rapid, and effective way of identifying CNRMV and CGRMV simultaneously in sweet cherry trees, which can aid in the management of viral infections that could undermine yield.

  12. Complete genome sequence of Brugmansia suaveolens mottle virus, a potyvirus from an ornamental shrub.

    Science.gov (United States)

    Lucinda, Natalia; Inoue-Nagata, Alice K; Kitajima, Elliot W; Nagata, Tatsuya

    2010-10-01

    Brugmansia suaveolens mottle virus (BsMoV) was the first potyvirus isolated from "angel trumpet" (Brugmansia suaveolens), described in Brazil. In this study, the complete nucleotide (nt) genome sequence of BsMoV was determined, and the deduced amino acid (aa) sequence was analyzed. The BsMoV RNA genome consists of 9870 nt without a poly-A tail, encoding a putative typical potyviral polyprotein of 3090 aa. Pairwise comparisons of the complete BsMoV genome with those of the most closely related potyviruses revealed a maximum nucleotide identity of 63.7% with pepper mottle virus. These results and phylogenetic analyses based on the complete genome sequence of the most closely related potyviruses confirmed that BsMoV should be considered a member of a distinct species of the genus Potyvirus.

  13. Characterization of Canna yellow mottle virus in a New Host, Alpinia purpurata, in Hawaii.

    Science.gov (United States)

    Zhang, Jingxin; Dey, Kishore K; Lin, Birun; Borth, Wayne B; Melzer, Michael J; Sether, Diane; Wang, Yanan; Wang, I-Chin; Shen, Huifang; Pu, Xiaoming; Sun, Dayuan; Hu, John S

    2017-06-01

    Canna yellow mottle virus (CaYMV) is an important badnavirus infecting Canna spp. worldwide. This is the first report of CaYMV in flowering ginger (Alpinia purpurata) in Hawaii, where it is associated with yellow mottling and necrosis of leaves, vein streaking, and stunted plants. We have sequenced CaYMV in A. purpurata (CaYMV-Ap) using a combination of next-generation sequencing and traditional Sanger sequencing techniques. The complete genome of CaYMV-Ap was 7,120 bp with an organization typical of other Badnavirus species. Our results indicated that CaYMV-Ap was present in the episomal form in infected flowering ginger. We determined that this virus disease is prevalent in Hawaii and could potentially have significant economic impact on the marketing of A. purpurata as cut flowers. There is a potential concern that the host range of CaYMV-Ap may expand to include other important tropical plants.

  14. potential for biological control of rice yellow mottle virus vectors ...

    African Journals Online (AJOL)

    Administrator

    (ii) the diversity and the occurrence of potential major groups of predators and parasitoids were assessed. ... manage the yield losses caused by the virus infection in rice cropping systems. ... The aim of this work was to assess the species.

  15. Evidence for Non-Transmission of Rice Yellow Mottle Virus (RYMV through Rice Seed

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    Sy, AA.

    2004-01-01

    Full Text Available An indexing of the organs (radicle and plumule and components (husk, endosperm and embryo of rice seeds using Enzyme Linked Immunosorbent Assay (ELISA was carried out to detect Rice yellow mottle virus (RYMV and establish the exact location of the virus in the rice seed. RYMV was detected only in the husk (seed coat but not in the endosperm, plumule, radicle, nor embryo. None of the seedlings raised from the seeds expressed RYMV symptoms. No virus particle was detected by the ELISA test in the leaves of the screenhouse-reared plants obtained from seeds of infected plants. The results indicate that RYMV is apparently not transmitted through rice seed probably because the virus is seed-borne in the husk (seed coat of mature rice seeds.

  16. Inheritance and molecular mapping of an allele providing resistance to Cowpea mild mottle virus-like symptoms in soybean

    Science.gov (United States)

    Damage to soybean [Glycine max (L.) Merr.] from Cowpea mild mottle virus-like (CPMMV-L) symptoms (family: Betaflexiviridae, genus: Carlavirus) has been of increasing concern in Argentina, Brazil, Mexico, and Puerto Rico. Soybean cultivars and lines differing in their reaction to the virus have been ...

  17. Seed transmission rates of Bean pod mottle virus and Soybean mosaic virus in soybean may be affected by mixed infection or expression of the Kunitz trypsin inhibitor

    Science.gov (United States)

    To facilitate their spread, plant viruses have developed several methods for dispersal including insect and seed transmission. While insect transmission requires virus stability against insect digestion, seed-transmitted viruses have to overcome barriers to entry into embryos. Bean pod mottle virus ...

  18. Saturation-transfer ESR spectroscopy on maleimide spin-labeled cowpea chlorotic mottle virus

    Science.gov (United States)

    Vriend, G.; Schilthuis, J. G.; Verduin, B. J. M.; Hemminga, M. A.

    1984-07-01

    One of the two SH groups of the coat protein of Cowpea chlorotic mottle virus (CCMV) was spin-labeled with 3-maleimido-2,2,5,5-tetramethyl-l-pyrrolodinyloxyl. Both electron spin resonance and saturation-transfer electron spin resonance spectra were recorded of intact CCMV and CCMV in which the protein subunits are cross-linked with glutaraldehyde. From an analysis of these spectra it follows that the spin label performs a local anisotropic motion with respect to the protein to which it is attached. It is also concluded that no internal protein mobility is present on the ST-ESR timescale.

  19. Classification of cucumber green mottle mosaic virus (CGMMV) infected watermelon seeds using Raman spectroscopy

    Science.gov (United States)

    Lee, Hoonsoo; Lim, Hyoun-Sub; Cho, Byoung-Kwan

    2016-05-01

    The Cucumber Green Mottle Mosaic Virus (CGMMV) is a globally distributed plant virus. CGMMV-infected plants exhibit severe mosaic symptoms, discoloration, and deformation. Therefore, rapid and early detection of CGMMV infected seeds is very important for preventing disease damage and yield losses. Raman spectroscopy was investigated in this study as a potential tool for rapid, accurate, and nondestructive detection of infected seeds. Raman spectra of healthy and infected seeds were acquired in the 400 cm-1 to 1800 cm-1 wavenumber range and an algorithm based on partial least-squares discriminant analysis was developed to classify infected and healthy seeds. The classification model's accuracies for calibration and prediction data sets were 100% and 86%, respectively. Results showed that the Raman spectroscopic technique has good potential for nondestructive detection of virus-infected seeds.

  20. Destruction of Cucumber green mottle mosaic virus by heat treatment and rapid detection of virus inactivation by RT-PCR.

    Science.gov (United States)

    Kim, Sang-Min; Nam, Sang-Hyun; Lee, Jung-Myung; Yim, Kyu-Ock; Kim, Kook-Hyung

    2003-12-31

    Heat treatment is commonly used to control viral contamination of seeds. To study virus inactivation, virus was purified from seeds contaminated with Cucumber green mottle mosaic virus (CGMMV) after various heat treatments. CGMMV particles were observed to be physically disrupted by high temperature. Analysis of viral RNA revealed that the 5' and 3' termini of the genome were protected whereas regions between 2-2.5, 3.2-3.7 and 4-4.8 kb from the 5' terminus were not. Heat inactivation of virus on seeds was confirmed by RT-PCR using primers for a heat-sensitive region. The RT-PCR approach developed here may prove preferable to time- and labor-intensive bioassays for assessing virus heat inactivation.

  1. Nucleotide sequences of two Korean isolates of Cucumber green mottle mosaic virus.

    Science.gov (United States)

    Kim, Sang-Min; Lee, Jung-Myung; Yim, Kyu-Ock; Oh, Man-Ho; Park, Jin-Woo; Kim, Kook-Hyung

    2003-12-31

    The nucleotide sequences of the genomic RNAs of Cucumber green mottle mosaic virus Korean watermelon isolate (CGMMV-KW) and Korean oriental melon isolate (CGMMV-KOM) were determined and compared to the sequences of other tobamoviruses including CGMMV strains W and SH. Each CGMMV isolate had a genome of 6,424 nucleotides. Each also had 60 and 176 nucleotides of 5' and 3' untranslated regions (UTRs), respectively, and four open reading frames (ORF1-4). ORFs 1 to 4 encode proteins of 129, 186, 29, and 17.4 kDa, respectively. The nucleotide and deduced amino acid sequences of CGMMV-KOM and CGMMV-KW were more than 98.3% identical. When compared to other CGMMV strains in a phylogenetic analysis they were found to form a distinct virus clade, and were more distantly related to other tobamoviruses (23.5-56.7% identity).

  2. Characterization of siRNAs derived from cucumber green mottle mosaic virus in infected cucumber plants.

    Science.gov (United States)

    Li, Yongqiang; Deng, Congliang; Shang, Qiaoxia; Zhao, Xiaoli; Liu, Xingliang; Zhou, Qi

    2016-02-01

    Virus-derived small interfering RNAs (vsiRNAs) of cucumber green mottle mosaic virus (CGMMV), a member of the genus Tobamovirus, were characterised in cucumber plants by deep sequencing. CGMMV vsiRNAs of 21-22 nt in length predominated, suggesting that there might be a conserved mechanism of DCL2 and DCL4 involvement in the biogenesis of vsiRNAs, as well as a common RNA silencing pathway in CGMMV-infected cucumber plants. The 5'-terminal base of vsiRNAs was biased towards C/A/U, suggesting that CGMMV vsiRNAs might be loaded into diverse AGO-containing RISCs to disturb the gene expression of host plants. Possible targets for some of the vsiRNAs were also predicted.

  3. Versatile post-functionalization of the external shell of cowpea chlorotic mottle virus by using click chemistry

    NARCIS (Netherlands)

    Hommersom, C.A.; Matt, B.D.; van der Ham, A.M.; Cornelissen, Jeroen Johannes Lambertus Maria; Katsonis, Nathalie Hélène

    2014-01-01

    We present the modification of the outer protein shell of cowpea chlorotic mottle virus (CCMV) with linear and strained alkyne groups. These functionalized protein capsids constitute valuable platforms for post-functionalization via click chemistry. After modification, the integrity of the capsid an

  4. Colorimetric detection of Cucumber green mottle mosaic virus using unmodified gold nanoparticles as colorimetric probes.

    Science.gov (United States)

    Wang, Lin; Liu, Zhanmin; Xia, Xueying; Yang, Cuiyun; Huang, Junyi; Wan, Sibao

    2017-05-01

    Cucumber green mottle mosaic virus (CGMMV)causes a severe mosaic symptom of watermelon and cucumber, and can be transmitted via infected cucumber seeds, leaves and soil. It remains a challenge to detect this virus to prevent its introduction and infection and spread in fields. For this purpose, a simple and sensitive label-free colorimetric detection method for CGMMV has been developed with unmodified gold nanoparticles (AuNPs) as colorimetric probes. The method is based on the finding that the presence of RT-PCR target products of CGMMV and species-specific probes results in color change of AuNPs from red to blue after NaCl induction. Normally, species-specific probes attach to the surface of AuNPs and thereby increasing their resistance to NaCl-induced aggregation. The concentration of sodium, probes in the reaction system and evaluation of specificity and sensitivity of a novel assay, visual detection of Cucumber green mottle mosaic virus using unmodified AuNPs has been carried out with simple preparation of samples in our study. Through this assay, as low as 30pg/μL of CGMMV RNA was thus detected visually, by the naked eye, without the need for any sophisticated, expensive instrumentation and biochemical reagents. The specificity was 100% and exhibited good reproducibility in our assays. The results note that this assay is highly species-specific, simple, low-cost, and visual for easy detection of CGMMV in plant tissues. Therefore, visual assay is a potentially useful tool for middle or small-scales corporations and entry-exit inspection and quarantine bureau to detect CGMMV in cucumber seeds or plant tissues.

  5. Temporal and spatial Bean pod mottle virus-induced gene silencing in soybean.

    Science.gov (United States)

    Juvale, Parijat S; Hewezi, Tarek; Zhang, Chunquan; Kandoth, Pramod Kaitheri; Mitchum, Melissa G; Hill, John H; Whitham, Steven A; Baum, Thomas J

    2012-12-01

    Virus-induced gene silencing (VIGS) is a powerful reverse genetics tool in plant science. In this study, we investigated the temporal and spatial silencing patterns achieved by Bean pod mottle virus (BPMV)-based VIGS in soybean using virus constructs targeting green fluorescence protein (GFP). Silencing GFP enabled an in-depth analysis of silencing in soybean tissues over time in a transgenic line constitutively expressing GFP. We discovered evidence for variable GFP silencing based on insert orientation and targeted region in the coding sequence. A 3' sequence in reverse orientation produced the strongest silencing phenotypes. Furthermore, we documented that BPMV VIGS can achieve widespread silencing in a broad range of tissues, including leaves, stems, flowers and roots. Near-complete silencing was attained in leaves and flowers. Although weaker than in shoots, the observed gene silencing in soybean roots will also allow reverse genetics studies in this tissue. When GFP fluorescence was assayed in cross-sections of stems and leaf petioles, near-complete and uniform silencing was observed in all cell types. Silencing was observed from as early as 2 weeks post-virus inoculation in leaves to 7 weeks post-virus inoculation in flowers, suggesting that this system can induce and maintain silencing for significant durations.

  6. [Specifics of the coat protein gene in Russian strains of the cucumber green mottle mosaic virus].

    Science.gov (United States)

    Slavokhotova, A A; Andreeva, E N; Shiian, A N; Odintsova, T I; Pukhal'skiĭ, V A

    2007-11-01

    The primary structure of the coat protein (CP) gene was examined for pathogenic strain MS-1 and vaccine strain VIROG-43M of the cucumber green mottle mosaic virus (CGMMV). In CP amino acid composition, strains MS-1 and VIROG-43M are typical representatives of CGMMV: their CPs have 98-100% homology to CPs of other tobamoviruses of the group. The CP gene has the same nucleotide composition in pathogenic MS-1 and vaccine VIROG-43M, indicating that strain attenuation is not determined by this gene. The CP amino acid sequences of the two Russian strains are fully identical to the CP sequences of two Greek strains, GR-3 and GR-5. However, the nucleotide sequences of their genes differ in 13 bp, testifying to the difference between the Russian and Greek strains.

  7. Effect of watermelon silver mottle virus on the life history and feeding preference of Thrips palmi.

    Science.gov (United States)

    Chen, Wei-Te; Tseng, Chien-Hao; Tsai, Chi-Wei

    2014-01-01

    Thrips-borne tospoviruses cause numerous plant diseases that produce severe economic losses worldwide. In the disease system, thrips not only damage plants through feeding but also transmit causative agents of epidemics. In addition, thrips are infected with tospoviruses in the course of virus transmission. Most studies on the effect of tospoviruses on vector thrips have focused on the Tomato spotted wilt virus-Frankliniella occidentalis system. Thus, we focused on another thrips-borne tospovirus, Watermelon silver mottle virus (WSMoV), to examine the effect of virus infection on its vector, Thrips palmi. In this study, the direct and indirect effects of WSMoV on the life history traits and feeding preference of T. palmi were examined. The survival rate and developmental time of the WSMoV-infected larval thrips did not differ significantly from those of the virus-free thrips. Comparing the developmental time of larval thrips fed on the healthy plants, thrips-damaged plants, and thrips-inoculated plants (the WSMoV-infected plants caused by thrips feeding), feeding on the thrips-damaged plants reduced the developmental time, and the WSMoV infection in host plants partially canceled the effect of thrips damage on the developmental time. In addition, no significant variations between the virus-free and WSMoV-infected adult thrips regarding longevity and fecundity were observed. These results implied that WSMoV did not directly affect the life history traits of T. palmi, but the WSMoV infection indirectly affected the development of T. palmi through the virus-infected plants. Furthermore, feeding preference tests indicated that T. palmi preferred feeding on either the thrips-damaged plants or the thrips-inoculated plants to the healthy plants. The effect of tospoviruses on the life history and feeding preference of vector thrips might vary among host plants, virus species, vector species, and environmental factors.

  8. Detection and molecular characterization of Pepper mild mottle virus in Serbia

    Directory of Open Access Journals (Sweden)

    Milošević Dragana

    2015-01-01

    Full Text Available During 2009 and 2010, a survey was conducted in pepper crops to detect the possible presence of Pepper mild mottle virus (PMMoV in Serbia. A total of 239 pepper samples from 39 crops at 26 localities were collected and analyzed for the presence of PMMoV, Cucumber mosaic virus (CMV, Potato virus Y (PVY, and Alfalfa mosaic virus (AMV, using DAS-ELISA test. Although it was detected in a small percentage, PMMoV could pose a threat to pepper production in Serbia due to its rapid seed-borne spread. Presence of PMMoV was confirmed by serological and biological detection, followed by conventional reverse transcription RT-PCR, using primers specific for the RNA-dependent RNA polymerase (RdRp and the coat protein (CP genes. Molecular identification confirmed that the Serbian isolates belong to PMMoV pathotypes P1,2 which do not break the resistance gene L3. Reconstructed phylogenetic tree confirmed the allocation of the Serbian isolates together with the majority of PMMoV isolates which belong to pathotypes P1,2. This study represents the first serological and molecular characterization of PMMoV infection of pepper in Serbia, and provides important data on the population structure. The obtained data could have great influence on pepper production in Serbia as well as future pepper resistance breeding in the country. [Projekat Ministarstva nauke Republike Srbije, br. TR31030 i br. III-43001

  9. A 2014 nationwide survey of the distribution of Soybean mosaic virus (SMV), Soybean yellow mottle mosaic virus (SYMMV) and Soybean yellow common mosaic virus (SYCMV) major viruses in South Korean soybean fields, and changes

    Science.gov (United States)

    In 2014 symptomatic soybean samples were collected throughout Korea, and were tested for the most important soybean viruses found in Korea, namely Soybean mosaic virus (SMV), Soybean yellow common mosaic virus (SYCMV), and Soybean yellow mottle mosaic virus (SYMMV). SYMMV was most commonly detected,...

  10. Infectivity and complete nucleotide sequence of cucumber fruit mottle mosaic virus isolate Cm cDNA.

    Science.gov (United States)

    Rhee, Sun-Ju; Hong, Jin-Sung; Lee, Gung Pyo

    2014-07-01

    Three isolates of cucumber fruit mottle mosaic virus (CFMMV) were collected from melon, cucumber, and pumpkin plants in Korea. A full-length cDNA clone of CFMMV-Cm (melon isolate) was produced and evaluated for infectivity after T7 transcription in vitro (pT7CF-Cmflc). The complete CFMMV genome sequence of the infectious clone pT7CF-Cmflc was determined. The genome of CFMMV-Cm consisted of 6,571 nucleotides and shared high nucleotide sequence identity (98.8 %) with the Israel isolate of CFMMV. Based on the infectious clone pT7CF-Cmflc, a CaMV 35S-promoter driven cDNA clone (p35SCF-Cmflc) was subsequently constructed and sequenced. Mechanical inoculation with RNA transcripts of pT7CF-Cmflc and agro-inoculation with p35SCF-Cmflc resulted in systemic infection of cucumber and melon, producing symptoms similar to those produced by CFMMV-Cm. Progeny virus in infected plants was detected by RT-PCR, western blot assay, and transmission electron microscopy.

  11. Analysis of the systemic colonization of cucumber plants by Cucumber green mottle mosaic virus.

    Science.gov (United States)

    Moreno, I M; Thompson, J R; García-Arenal, F

    2004-03-01

    Systemic movement of Cucumber green mottle mosaic virus (CGMMV) in cucumber plants was shown to be from photoassimilate source to sink, thus indicating phloem transport. Nevertheless, CGMMV was not detected by immunocytochemical procedures in the intermediary cell-sieve element complex in inoculated cotyledons, where photoassimilate loading occurs. In stem internodes, CGMMV was first localized in the companion cells of the external phloem and subsequently in all tissues except the medulla, therefore suggesting leakage of the virus from, and reloading into, the transport phloem during systemic movement. In systemically infected sink leaves, CGMMV was simultaneously detected in the xylem and phloem. Interestingly, CGMMV accumulated to high levels in the differentiating tracheids of young leaves implying that the xylem could be involved in the systemic movement of CGMMV. This possibility was tested using plants in which cell death was induced in a portion of the stem by steam treatment. At 24 degrees C, steam treatment effectively prevented the systemic movement of CGMMV, even though viral RNA was detected in washes of the xylem above the steamed internode suggesting that xylem circulation occurred. At 29 degrees C, CGMMV systemically infected steam-treated cucumber plants, indicating that CGMMV can move systemically via the xylem. Xylem transport of CGMMV was, however, less efficient than phloem transport in terms of the time required for systemic infection and the percentage of plants infected.

  12. Complete genome sequencing of Piper yellow mottle virus infecting black pepper, betelvine, and Indian long pepper.

    Science.gov (United States)

    Deeshma, K P; Bhat, A I

    2015-02-01

    The complete genome of the Piper yellow mottle virus (PYMoV), a Badnavirus belonging to the family Caulimoviridae, was sequenced from three naturally infected hosts namely, black pepper, betelvine, and Indian long pepper. The genome length of the three virus strains (one from each of the three host species) varied from 7,559 to 7,584 nucleotides, and all the three strains possessed four open reading frames (ORFs) I to IV that potentially encode proteins of 15.67, 17.08, 218.6, and 17.22 kDa, respectively. ORF III encodes a polyprotein consisting of viral movement protein, trimeric dUTPase, zinc finger, aspartic protease, reverse transcriptase, and RNase H whereas ORF I, II, and IV encode proteins of unknown functions. The complete genome sequences at the nucleotide level were 89-99 % identical with one available sequence of PYMoV and 39-56 % identical with other badnaviruses, indicating that all three are strains of PYMoV. Nucleotide and amino acid sequences of ORF I-IV and of the intergenic region (IR) were 80-100 % identical among PYMoV strains. Phylogenetic analysis of ORF III amino acid sequences showed the PYMoV strains forming a distinct cluster well separated from other badnaviruses. Among other badnaviruses, Fig badnavirus 1 (FBV-1) was the one most closely related to PYMoV.

  13. Complete nucleotide sequence of a Spanish isolate of Parietaria mottle virus infecting tomato.

    Science.gov (United States)

    Galipienso, Luis; Rubio, Luis; López, Luis; Soler, Salvador; Aramburu, José

    2009-10-01

    The genome of a Spanish isolate of Parietaria mottle virus (PMoV) obtained from tomato (strain PMoV-T) was completely sequenced. Protein motifs conserved for RNA viruses were identified: the p1 protein contained a metyltransferase domain in its N-terminal half and a triphosphatase/ helicase domain in its C-terminal half, the p2 protein contained a RNA polymerase domain; the 3a protein contained a RNA-binding domain with α-helix and β-sheet secondary structures. In addition, stem-loop structures with potential capacity of protein interactions were predicted on the untranslated terminal regions. Comparison with the other sequenced PMoV isolate showed nucleotide identities of 93, 90, and 93% for genomic RNAs 1, 2 and 3, respectively, and amino acid identities ranging from 88 to 97% for the different proteins. A cytosine deletion was detected at position 1,366 of RNA 3, involving a start codon for the coat protein (CP) gene different from the other PMoV isolate, resulting in a CP 16 amino acids shorter. Comparison of synonymous and nonsynonymous mutations revealed different selective constraints along the genome.

  14. Evidence that whitefly-transmitted cowpea mild mottle virus belongs to the genus Carlavirus.

    Science.gov (United States)

    Naidu, R A; Gowda, S; Satyanarayana, T; Boyko, V; Reddy, A S; Dawson, W O; Reddy, D V

    1998-01-01

    Two strains of whitefly-transmitted cowpea mild mottle virus (CPMMV) causing severe (CPMMV-S) and mild (CPMMV-M) disease symptoms in peanuts were collected from two distinct agro-ecological zones in India. The host-range of these strains was restricted to Leguminosae and Chenopodiaceae, and each could be distinguished on the basis of symptoms incited in different hosts. The 3'-terminal 2500 nucleotide sequence of the genomic RNA of both the strains was 70% identical and contains five open reading frames (ORFs). The first three (P25, P12 and P7) overlap to form a triple gene block of proteins, P32 encodes the coat protein, followed by P12 protein located at the 3' end of the genome. Genome organization and pair-wise comparisons of amino acid sequences of proteins encoded by these ORFs with corresponding proteins of known carlaviruses and potexviruses suggest that CPMMV-S and CPMMV-M are closely related to viruses in the genus Carlavirus. Based on the data, it is concluded that CPMMV is a distinct species in the genus Carlavirus.

  15. Molecular variability of cowpea mild mottle virus infecting soybean in Brazil.

    Science.gov (United States)

    Zanardo, L G; Silva, F N; Lima, A T M; Milanesi, D F; Castilho-Urquiza, G P; Almeida, A M R; Zerbini, F M; Carvalho, C M

    2014-04-01

    Molecular variability was assessed for 18 isolates of cowpea mild mottle virus (CPMMV, genus Carlavirus, family Betaflexiviridae) found infecting soybean in various Brazilian states (Bahia, Goiás, Maranhão, Mato Grosso, Minas Gerais, Pará) in 2001 and 2010. A variety of symptoms was expressed in soybean cv. CD206, ranging from mild (crinkle/blistering leaves, mosaic and vein clearing) to severe (bud blight, dwarfing, leaf and stem necrosis). Recombination analysis revealed only one CPMMV isolate to be recombinant. Pairwise comparisons and phylogenetic analysis were performed for partial genomes (ORF 2 to the 3' terminus) and for each ORF individually (ORFs 2 to 6), showing the isolates to be distinct. The topology of the phylogenetic tree could be related to symptoms, but not to the year of collection or geographical origin. Additionally, the phylogenetic analysis supported the existence of two distinct strains of the virus, designated CPMMV-BR1 and CPMMV-BR2, with molecular variations between them.

  16. Genetic variation and population structure of Cucumber green mottle mosaic virus.

    Science.gov (United States)

    Rao, Li-Xia; Guo, Yushuang; Zhang, Li-Li; Zhou, Xue-Ping; Hong, Jian; Wu, Jian-Xiang

    2017-01-04

    Cucumber green mottle mosaic virus (CGMMV) is a single-stranded, positive sense RNA virus infecting cucurbitaceous plants. In recent years, CGMMV has become an important pathogen of cucurbitaceous crops including watermelon, pumpkin, cucumber and bottle gourd in China, causing serious losses to their production. In this study, we surveyed CGMMV infection in various cucurbitaceous crops grown in Zhejiang Province and in several seed lots purchased from local stores with the dot enzyme-linked immunosorbent assay (dot-ELISA), using a CGMMV specific monoclonal antibody. Seven CGMMV isolates obtained from watermelon, grafted watermelon or oriental melon samples were cloned and sequenced. Identity analysis showed that the nucleotide identities of the seven complete genome sequences ranged from 99.2 to 100%. Phylogenetic analysis of seven CGMMV isolates as well as 24 other CGMMV isolates from the GenBank database showed that all CGMMV isolates could be grouped into two distinct monophyletic clades according to geographic distribution, i.e. Asian isolates for subtype I and European isolates for subtype II, indicating that population diversification of CGMMV isolates may be affected by geographical distribution. Site variation rate analysis of CGMMV found that the overall variation rate was below 8% and mainly ranged from 2 to 5%, indicating that the CGMMV genomic sequence was conservative. Base substitution type analysis of CGMMV showed a mutational bias, with more transitions (A↔G and C↔T) than transversions (A↔C, A↔T, G↔C and G↔T). Most of the variation occurring in the CGMMV genome resulted in non-synonymous substitutions, and the variation rate of some sites was higher than 30% because of this mutational bias. Selection constraint analysis of CGMMV ORFs showed strong negative selection acting on the replication-associated protein, similar to what occurs for other plant RNA viruses. Finally, potential recombination analysis identified isolate Ec as a

  17. Occurrence and molecular characterization of Cucumber green mottle mosaic virus in cucurbit crops of KPK, Pakistan

    Directory of Open Access Journals (Sweden)

    Asad Ali

    2014-12-01

    Full Text Available Field survey of the cucurbit crops revealed a high incidence of Cucumber green mottle mosaic virus (CGMMV in Khyber Pakhtunkhwa Province (KPK, Pakistan. Among the seven districts surveyed, average percent incidence of CGMMV was recorded up to 58.1% in district Nowshera, followed by 51.1% in district Charsada, 40.5% in district Swabi and 37.3% in district Mardan. In Swat and Dir districts average incidence CGMMV was recorded upto 31.2% and 29.4%, respectively. Among the different crops highest incidence in plain areas of KPK was recorded in bottle gourd (59.3% followed by 56.3% in Squash, 54.5% in Pumpkin, 45.5% in Melon, 41.7% in Cucumber and 29.9% in Sponge gourd. In Northern hilly areas highest incidence of CGMMV (52.9% was observed in pumpkin, followed by 49.6% in bottle gourd, 47.3% in squash, 45.1% in Melon 42.3% in cucumber and 41.6% in sponge gourd. Little variability was observed in the coat protein amino acid sequence identities of CGMMV Pakistan isolate, when compared with other reported isolates.

  18. Short communication. First report of Eggplant mottled dwarf virus in China rose in southern Spain

    Directory of Open Access Journals (Sweden)

    G. Parrella

    2013-01-01

    Full Text Available Eggplant mottled dwarf virus (EMDV, genus Nucleorhabdovirus, family Rhabdoviridae is transmitted in nature by leafhoppers and its natural host range includes vegetable crops (eggplant, tomato, potato, pepper, ornamentals (pittosporum, honeysuckle, pelargonium and wild plants (caper, Solanum nigrum. The prevalence of infections is generally very low. EMDV has been demonstrated to be the causal agent of a vein yellowing disease of China rose (Hibiscus rosa-sinensis in southern Italy. In this work, four locations from Málaga and Granada provinces (southern Spain were surveyed in 2011 to study the prevalence of EMDV infections in China rose by serological and molecular methods. Overall, EMDV was detected in 77.3% of the samples (33 out of 45 samples tested. Mechanical transmission tests and immunoelectron microscopy confirmed the presence of EMDV. The possible causes of such a high and unexpected prevalence are discussed. The use of molecular hibridization with an EMDV specific riboprobe is proposed for early screening of vegetative propagated China rose plants to avoid dissemination of infected material.

  19. Structural rigidity in the capsid assembly of cowpea chlorotic mottle virus

    Science.gov (United States)

    Hespenheide, B. M.; Jacobs, D. J.; Thorpe, M. F.

    2004-11-01

    The cowpea chlorotic mottle virus (CCMV) has a protein cage, or capsid, which encloses its genetic material. The structure of the capsid consists of 180 copies of a single protein that self-assemble inside a cell to form a complete capsid with icosahedral symmetry. The icosahedral surface can be naturally divided into pentagonal and hexagonal faces, and the formation of either of these faces has been proposed to be the first step in the capsid assembly process. We have used the software FIRST to analyse the rigidity of pentameric and hexameric substructures of the complete capsid to explore the viability of certain capsid assembly pathways. FIRST uses the 3D pebble game to determine structural rigidity, and a brief description of this algorithm, as applied to body-bar networks, is given here. We find that the pentameric substructure, which corresponds to a pentagonal face on the icosahedral surface, provides the best structural properties for nucleating the capsid assembly process, consistent with experimental observations.

  20. Structural rigidity in the capsid assembly of cowpea chlorotic mottle virus

    Energy Technology Data Exchange (ETDEWEB)

    Hespenheide, B M [Department of Physics and Astronomy, Arizona State University, PO Box 871504, Tempe, AZ 85287-1504 (United States); Jacobs, D J [Department of Physics and Astronomy, California State University, 18111 Nordhoff Street, Northridge, CA 91330-8268 (United States); Thorpe, M F [Department of Physics and Astronomy, Arizona State University, PO Box 871504, Tempe, AZ 85287-1504 (United States)

    2004-11-10

    The cowpea chlorotic mottle virus (CCMV) has a protein cage, or capsid, which encloses its genetic material. The structure of the capsid consists of 180 copies of a single protein that self-assemble inside a cell to form a complete capsid with icosahedral symmetry. The icosahedral surface can be naturally divided into pentagonal and hexagonal faces, and the formation of either of these faces has been proposed to be the first step in the capsid assembly process. We have used the software FIRST to analyse the rigidity of pentameric and hexameric substructures of the complete capsid to explore the viability of certain capsid assembly pathways. FIRST uses the 3D pebble game to determine structural rigidity, and a brief description of this algorithm, as applied to body-bar networks, is given here. We find that the pentameric substructure, which corresponds to a pentagonal face on the icosahedral surface, provides the best structural properties for nucleating the capsid assembly process, consistent with experimental observations.

  1. The 3.2 Angstrom Resolution Structure of the Polymorphic Cowpea Chlorotic Mottle Virus Ribonucleoprotein Particle

    Science.gov (United States)

    Speir, Jeffrey Alan

    Structural studies of the polymorphic cowpea chlorotic mottle virus have resulted in high resolution structures for two distinct icosahedral ribonucleoprotein particle conformations dependent upon whether acidic or basic pH conditions prevail. CCMV is stable below pH 6.5, however metal-free particles maintain a 10% increase in hydrodynamic volume at pH >=q 7.5. Identification of this swollen' form of CCMV, which can easily be disrupted with 1M NaCl, led to the first reassembly of an icosahedral virus in vitro from purified viral protein and RNA to form infectious particles, and its assembly has been the subject of biochemical and biophysical investigations for over twenty-five years. Under well defined conditions of pH, ionic strength and divalent metal ion concentration, CCMV capsid protein or capsid protein and RNA will reassemble to form icosahedral particles of various sizes, sheets, tubes, rosettes, and a variety of laminar structures which resemble virion structures from non-related virus families. Analysis of native particles at 3.2A resolution and swollen particles at 28A resolution has suggested that the chemical basis for the formation of polymorphic icosahedral and anisometric structures is: (i) hexamers formed of beta-barrel subunits stabilized by an unusual hexameric parallel beta structure made up of their N-termini, (ii) the location of protein-RNA interactions, (iii) divalent metal cation binding sites that regulate quasi-symmetrical subunit associations, (iv) charge repulsion across the same interfaces when lacking divalent metal ions at basic pH, which induces the formation of sixty 20A diameter portals for RNA release, and (v) a novel, C-terminal-based, subunit dimer assembly unit. The use of C- and N-terminal arms in CCMV has not been observed in other icosahedral RNA virus structures determined at near atomic resolution, however, their detailed interactions and roles in stabilizing the quaternary organization of CCMV are related to that found

  2. Monoclonal antibody-based serological methods for detection of Cucumber green mottle mosaic virus

    Directory of Open Access Journals (Sweden)

    Qian Yajuan

    2011-05-01

    Full Text Available Abstract Background Cucumber green mottle mosaic virus (CGMMV, a member of the genus Tobamovirus, can be transmitted by seeds and infects many cucurbit species, causing serious yield losses in cucumber and watermelon plants. In this paper, five serological methods including antigen-coated plate enzyme-linked immunosorbent assay (ACP-ELISA, triple antibody sandwich enzyme-linked immunosorbent assay (TAS-ELISA, Dot-immunobinding assay (DBIA, direct tissue blot immunoassay (DTBIA and immunocapture reverse transcriptase polymerase chain reaction (IC-RT-PCR were described for detection and diagnosis of CGMMV. Results Using the purified CGMMV particles as immunogens, six murine monoclonal antibodies (MAbs were produced. Five serological methods were established using the MAb 4H1 and detection sensitivity was compared using purified preparations and infected-plant tissue extracts. The detection sensitivity of ACP-ELISA was 0.16 ng of purified CGMMV, whereas TAS-ELISA was more sensitive than ACP-ELISA with a minimum detection of 0.04 ng of purified CGMMV. The sensitivities of TAS-ELISA and DBIA were similar for detecting CGMMV in infected-plant tissue extracts, and were four times higher than ACP-ELISA. The IC-RT-PCR was the most sensitive method, which could detect as little as 0.1 pg of purified virus. The detection sensitivity of IC-RT-PCR for CGMMV-infected plant tissues was about 400 times higher than that of TAS-ELISA and DBIA. Conclusions The established ACP-ELISA, TAS-ELISA, DBIA and DTBIA are suitable for routine CGMMV detection of large-scale samples in the field survey, while IC-RT-PCR is more sensitive and suitable for acquiring information about the viral genome.

  3. Bean pod mottle virus: a new powerful tool for functional genomics studies in Pisum sativum.

    Science.gov (United States)

    Meziadi, Chouaib; Blanchet, Sophie; Richard, Manon M S; Pilet-Nayel, Marie-Laure; Geffroy, Valérie; Pflieger, Stéphanie

    2016-08-01

    Pea (Pisum sativum L.) is an important legume worldwide. The importance of pea in arable rotations and nutritional value for both human and animal consumption have fostered sustained production and different studies to improve agronomic traits of interest. Moreover, complete sequencing of the pea genome is currently underway and will lead to the identification of a large number of genes potentially associated with important agronomic traits. Because stable genetic transformation is laborious for pea, virus-induced gene silencing (VIGS) appears as a powerful alternative technology for determining the function of unknown genes. In this work, we present a rapid and efficient viral inoculation method using DNA infectious plasmids of Bean pod mottle virus (BPMV)-derived VIGS vector. Six pea genotypes with important genes controlling biotic and/or abiotic stresses were found susceptible to BPMV carrying a GFP reporter gene and showed fluorescence in both shoots and roots. In a second step, we investigated 37 additional pea genotypes and found that 30 were susceptible to BPMV and only 7 were resistant. The capacity of BPMV to induce silencing of endogenes was investigated in the most susceptible genotype using two visual reporter genes: PsPDS and PsKORRIGAN1 (PsKOR1) encoding PHYTOENE DESATURASE and a 1,4-β-D-glucanase, respectively. The features of the 'one-step' BPMV-derived VIGS vector include (i) the ease of rub-inoculation, without any need for biolistic or agro-inoculation procedures, (ii) simple cost-effective procedure and (iii) noninterference of viral symptoms with silencing. These features make BPMV the most adapted VIGS vector in pea to make low- to high-throughput VIGS studies.

  4. Study on the Molecular Variation and PCR Detection of Strawberry mottle virus

    Institute of Scientific and Technical Information of China (English)

    YANG Hong-yi; LI Li-li; DAI Hong-yan; ZHANG Zhi-hong

    2009-01-01

    Strawberry mottle virus (SMoV) is an important viral pathogen infecting strawberry (Fragaria spp.). The study was conducted to analyze the characterization of the molecular variation of SMoV and develop the methods for detection of SMoV by nested PCR and transcriptional enhancement techniques. The 3' non-coding region (NCR) and large coat protein (LCP) gene of SMoV genome were amplified by reverse transcription-polymerase chain reaction (RT-PCR). The specific segments were cloned and sequenced. The characterization of the molecular variation for some isolates of SMoV and phylogenetic analysis were studied. Based on the primers located in the conserved region of genome of SMoV, SMoV could be steadily detected using semi-nested PCR and transcriptional enhancement techniques. Both semi-nested PCR and transcriptional enhancement techniques were considerably more sensitive than the standard RT-PCR. The nucleotide sequences of NCR and partial LCP gene of Chinese isolates were obtained, and sequence analysis of the partial LCP gene of various SMoV isolates showed nucleotide identities ranging from 76.8 to 99.7%. There was a slight tendency for isolates to group according to their geographical origin. All 3 Polish isolates, 4 isolates of 7 Dutch isolates, and 3 isolates of 4 Chinese isolates formed a small separate branch, respectively. Two Germanic isolates had a far relationship with other isolates, and formed a separate clade. A high level of sequence variability was found among SMoV isolates, and the Germanic isolates were likely to a special strain group.

  5. Rice Yellow Mottle Virus stress responsive genes from susceptible and tolerant rice genotypes

    Directory of Open Access Journals (Sweden)

    Siré Christelle

    2008-03-01

    Full Text Available Abstract Background The effects of viral infection involve concomitant plant gene variations and cellular changes. A simple system is required to assess the complexity of host responses to viral infection. The genome of the Rice yellow mottle virus (RYMV is a single-stranded RNA with a simple organisation. It is the most well-known monocotyledon virus model. Several studies on its biology, structure and phylogeography have provided a suitable background for further genetic studies. 12 rice chromosome sequences are now available and provide strong support for genomic studies, particularly physical mapping and gene identification. Results The present data, obtained through the cDNA-AFLP technique, demonstrate differential responses to RYMV of two different rice cultivars, i.e. susceptible IR64 (Oryza sativa indica, and partially resistant Azucena (O. s. japonica. This RNA profiling provides a new original dataset that will enable us to gain greater insight into the RYMV/rice interaction and the specificity of the host response. Using the SIM4 subroutine, we took the intron/exon structure of the gene into account and mapped 281 RYMV stress responsive (RSR transcripts on 12 rice chromosomes corresponding to 234 RSR genes. We also mapped previously identified deregulated proteins and genes involved in partial resistance and thus constructed the first global physical map of the RYMV/rice interaction. RSR transcripts on rice chromosomes 4 and 10 were found to be not randomly distributed. Seven genes were identified in the susceptible and partially resistant cultivars, and transcripts were colocalized for these seven genes in both cultivars. During virus infection, many concomitant plant gene expression changes may be associated with host changes caused by the infection process, general stress or defence responses. We noted that some genes (e.g. ABC transporters were regulated throughout the kinetics of infection and differentiated susceptible and

  6. Occurrence of Squash yellow mild mottle virus and Pepper golden mosaic virus in Potential New Hosts in Costa Rica

    Directory of Open Access Journals (Sweden)

    Ruth M. Castro

    2013-09-01

    Full Text Available Leaf samples of Solanum lycopersicum, Capsicum annuum, Cucurbita moschata, Cucurbita pepo, Sechium edule and Erythrina spp. were collected. All samples were positive for begomoviruses using polymerase chain reaction and degenerate primers. A sequence of ∼1,100 bp was obtained from the genomic component DNA-A of 14 samples. In addition, one sequence of ∼580 bp corresponding to the coat protein (AV1 was obtained from a chayote (S. edule leaf sample. The presence of Squash yellow mild mottle virus (SYMMoV and Pepper golden mosaic virus (PepGMV were confirmed. The host range reported for SYMMoV includes species of the Cucurbitaceae, Caricaceae and Fabaceae families. This report extends the host range of SYMMoV to include the Solanaceae family, and extends the host range of PepGMV to include C. moschata, C. pepo and the Fabaceae Erythrina spp. This is the first report of a begomovirus (PepGMV infecting chayote in the Western Hemisphere.

  7. Occurrence of Squash yellow mild mottle virus and Pepper golden mosaic virus in Potential New Hosts in Costa Rica.

    Science.gov (United States)

    Castro, Ruth M; Moreira, Lisela; Rojas, María R; Gilbertson, Robert L; Hernández, Eduardo; Mora, Floribeth; Ramírez, Pilar

    2013-09-01

    Leaf samples of Solanum lycopersicum, Capsicum annuum, Cucurbita moschata, Cucurbita pepo, Sechium edule and Erythrina spp. were collected. All samples were positive for begomoviruses using polymerase chain reaction and degenerate primers. A sequence of ∼1,100 bp was obtained from the genomic component DNA-A of 14 samples. In addition, one sequence of ∼580 bp corresponding to the coat protein (AV1) was obtained from a chayote (S. edule) leaf sample. The presence of Squash yellow mild mottle virus (SYMMoV) and Pepper golden mosaic virus (PepGMV) were confirmed. The host range reported for SYMMoV includes species of the Cucurbitaceae, Caricaceae and Fabaceae families. This report extends the host range of SYMMoV to include the Solanaceae family, and extends the host range of PepGMV to include C. moschata, C. pepo and the Fabaceae Erythrina spp. This is the first report of a begomovirus (PepGMV) infecting chayote in the Western Hemisphere.

  8. Replication and encapsidation of the viroid-like satellite RNA of lucerne transient streak virus are supported in divergent hosts by cocksfoot mottle virus and turnip rosette virus.

    Science.gov (United States)

    Sehgal, O P; Sinha, R C; Gellatly, D L; Ivanov, I; AbouHaidar, M G

    1993-04-01

    Cocksfoot mottle sobemovirus supports replication and encapsidation of the viroid-like satellite RNA (sat-RNA) of lucerne transient streak virus (LTSV) in two monocotyledonous species, Triticum aestivum and Dactylis glomerata. Additionally, LTSV sat-RNA replicates effectively in the presence of turnip rosette sobemovirus in Brassica rapa, Raphanus raphanistrum and Sinapsis arvensis, but not in Thlaspi arvense or Nicotiana bigelovii, indicating that host species markedly influence this interaction. Previous reports of the association between LTSV sat-RNA and helper sobemoviruses were limited to dicotyledonous hosts. Our results demonstrate that the biological interaction between these two entities spans divergent dicotyledonous and monocotyledonous species.

  9. Pepper mild mottle virus, a plant virus associated with specific immune responses, Fever, abdominal pains, and pruritus in humans.

    Directory of Open Access Journals (Sweden)

    Philippe Colson

    Full Text Available BACKGROUND: Recently, metagenomic studies have identified viable Pepper mild mottle virus (PMMoV, a plant virus, in the stool of healthy subjects. However, its source and role as pathogen have not been determined. METHODS AND FINDINGS: 21 commercialized food products containing peppers, 357 stool samples from 304 adults and 208 stool samples from 137 children were tested for PMMoV using real-time PCR, sequencing, and electron microscopy. Anti-PMMoV IgM antibody testing was concurrently performed. A case-control study tested the association of biological and clinical symptoms with the presence of PMMoV in the stool. Twelve (57% food products were positive for PMMoV RNA sequencing. Stool samples from twenty-two (7.2% adults and one child (0.7% were positive for PMMoV by real-time PCR. Positive cases were significantly more likely to have been sampled in Dermatology Units (p<10(-6, to be seropositive for anti-PMMoV IgM antibodies (p = 0.026 and to be patients who exhibited fever, abdominal pains, and pruritus (p = 0.045, 0.038 and 0.046, respectively. CONCLUSIONS: Our study identified a local source of PMMoV and linked the presence of PMMoV RNA in stool with a specific immune response and clinical symptoms. Although clinical symptoms may be imputable to another cofactor, including spicy food, our data suggest the possibility of a direct or indirect pathogenic role of plant viruses in humans.

  10. Mottled Enamel

    OpenAIRE

    Sri Candiana Harahap

    2008-01-01

    Mottled enamel (enamel fluorosis, dental fluorosis) adalah salah satu bentuk dari hipoplasia enamel yaitu berupa berkurangnya jumlah matriks pembentuk enamel akibat adanya gangguan pada ameloblas selama tahap formatif perkembangan gigi, yang terjadi baik pada gigi desidui maupun gigi permanen. Penyebab terjadinya mottled enamel adalah fluorosis yaitu masuknya fluor dengan konsentrasi yang tinggi kedalam tubuh baik secara sistemik dan, atau lokal hingga mencapai > Ippm F. Gam...

  11. Real time TaqMan RT-PCR assay for the detection of Cucumber green mottle mosaic virus.

    Science.gov (United States)

    Hongyun, Chen; Wenjun, Zhao; Qinsheng, Gu; Qing, Chen; Shiming, Lin; Shuifang, Zhu

    2008-05-01

    A real time reverse-transcription polymerase chain reaction (RT-PCR) was developed for efficient detection of Cucumber green mottle mosaic virus (CGMMV). The method was designed to use a duo-primer system with a TaqMan probe targeting the conserved sequence in 3' noncoding region (NCR) of CGMMV to detect isolates of this virus collected in China. The sensitivity of the real time RT-PCR assay was 0.13 pg of total RNA or 50 molecules of RNA transcripts. This level of sensitivity indicated that the one step real time RT-PCR developed in the present study could be used for routine testing assays. The real time RT-PCR method could assist in the implementation of quarantine measures for prevention and control of the disease caused by CGMMV.

  12. Full-length sequence analysis of a distinct isolate of Bidens mottle virus infecting sunflower in Taiwan.

    Science.gov (United States)

    Liao, J Y; Hu, Chung-Chi; Chen, C C; Chang, C H; Deng, T C

    2009-01-01

    The full-length genome of a potyvirus, previously known as sunflower chlorotic spot virus isolate SF-1 (SCSV-SF-1) which causes novel symptoms on sunflowers (Helianthus annuus), was sequenced and analyzed. The genome of SCSV-SF-1 is 9,741 nucleotides long, encoding a polyprotein of 3,071 amino acids containing the consensus motifs of potyviruses. Sequence comparison revealed that the 3'-terminus of SCSV-SF-1 shared over 96% similarities with isolates of Bidens mottle virus (BiMoV). However, SCSV-SF-1 has a very narrow host range, excluding the diagnostic host species for BiMoV, Bidens pilosa and Zinnia elegans. Therefore, SCSV-SF-1 is a distinct isolate of BiMoV. This is the first report of the full-length nucleotide sequence of BiMoV infecting sunflower in Taiwan.

  13. Detection and some properties of cowpea mild mottle virus isolated from soybean in Iran.

    Science.gov (United States)

    Tavassoli, M; Shahraeen, N; Ghorbani, S

    2008-12-01

    During 2006-2007 growing seasons, survey were carried to identify a virus disease causing mosaic of soybean in the field in Southern region (Khozestan Province) of Iran. To detect the viral infection, diseased leaf samples showing mild mosaic and leaf malformation were collected from soybean fields in Dezful, located in Khozestan Province. Infected samples were carried to the lab in a proper condition on ice packages. TPIA and DAS-ELISA serological tests were applied to identify the viral agent. To investigate the host-range, several indicator plants were mechanically inoculated under green-house condition. Seed transmission of CPMMV was examined using the seeds obtained from infected plants. The virus isolate was not found to be seed-borne in Clark variety of soybean. Different steps of ultracentrifugation including sucrose density gradient (10-40%) were carried out in order to obtain partial purified virus. On the basis of biological, serological and EM results, CPMMV-Carla virus was identified in the infected soybean samples. This is the first report of CPMMV infection of soybean in Iran.

  14. Conformation of the RNA-binding N-terminus of the coat protein of cowpea chlorotic mottle virus : a nuclear magnetic resonance and optical spectroscopy study

    NARCIS (Netherlands)

    Graaf, van der M.

    1992-01-01

    The objective of the study described in this thesis was to obtain information about protein-RNA interactions in cowpea chlorotic mottle virus (CCMV). CCMV consists of RNA and a protective protein coat, composed of 180 identical coat proteins. The positively charged N-terminal arm of the

  15. Molecular and biological characterization of Tomato chlorotic mottle virus suggests that recombination underlies the evolution and diversity of Brazilian tomato begomoviruses

    NARCIS (Netherlands)

    Ribeiro, S.G.; Martin, D.P.; Lacorte, C.; Simoes, I.C.; Orlandini, D.R.S.; Inoue-Nagata, A.K.

    2007-01-01

    Tomato chlorotic mottle virus (ToCMoV) is an emerging begomovirus species widely distributed throughout tomato-growing regions of Brazil. ToCMoV appears to have expanded its geographic range recently, invading tomato-growing areas that were free of begomovirus infection before 2004. We have

  16. [Phylogenetic and Bioinformatics Analysis of Replicase Gene Sequence of Cucumber Green Mottle Mosaic Virus].

    Science.gov (United States)

    Liang, Chaoqiong; Meng, Yan; Luo, Laixin; Liu, Pengfei; Li, Jianqiang

    2015-11-01

    The replicase genes of five isolates of Cucumber green mottle mosaic virus from Jiangsu, Zhejiang, Hunan and Beijing were amplificated, sequenced and analyzed. The similarities of nucleotide acid sequences indicated that 129 kD and 57 kD replicase genes of CGMMV-No. 1, CGMMV-No. 2, CGMMV-No. 3, CGMMV-No. 4 and CGMMV-No. 5 were 99.64% and 99.74%, respectively. The similarities of 129 kD and 57 kD replicase genes of CGMMV-No. 1, CGMMV-No. 3 and CGMMV-No. 4 were 99.95% and 99.94%, while they were lower between CGMMV-No. 2 and the rest of four reference sequences, just from 99.16% to 99.27% and from 99.04% to 99.18%. All reference sequences could be divided into six groups in neighbor-joining (NJ) phylogenetic trees based on the replicase gene sequences of 129 kD, 57 kD protein respectively. CGMMV-No. 1, CGMMV-No. 3 and CGMMV-No. 4 were clustered together with Shandong isolate (Accession No. KJ754195) in two NJ trees; CGMMV-No. 5 was clustered together with Liaoning isolate (Accession No. EF611826) in two NJ trees; CGMMV-No. 2 was clustered together with Korea watermelon isolate (Accession No. AF417242) in phylogenetic tree of 129 kD replicase gene of CGMMV; Interestingly, CGMMV-No. 2 was classified as a independent group in phylogenetic tree of 57 kD replicase gene of CGMMV. There were no significant hydrophobic and highly coiled coil regions on 129 kD and 57 kD proteins of tested CGMMV isolates. Except 129 kD protein of CGMMV-No. 4, the rest were unstable protein. The number of transmembrane helical segments (TMHs) of 129 kD protein of CGMMV-No. 1, CGMMV-No. 2, CGMMV-No. 3 and CGMMV-No. 5 were 6, 6, 2 and 4, respectively, which were 13, 13 and 5 on the 57 kD protein of CGMMV-No. 2, CGMMV-No. 4 and CGMMV-No. 5. The glycosylation site of 129 kD protein of tested CGMMV isolates were 2, 4, 4, 4 and 4, and that of 57 kD protein were 2, 5, 2, 5 and 2. There were difference between the disorders, globulins, phosphorylation sites and B cell antigen epitopes of 129 kD and 57

  17. Structural Transitions and Energy Landscape for Cowpea Chlorotic Mottle Virus Capsid Mechanics from Nanomanipulation in Vitro and in Silico

    Science.gov (United States)

    Kononova, Olga; Snijder, Joost; Brasch, Melanie; Cornelissen, Jeroen; Dima, Ruxandra I.; Marx, Kenneth A.; Wuite, Gijs J. L.; Roos, Wouter H.; Barsegov, Valeri

    2013-10-01

    Physical properties of capsids of plant and animal viruses are important factors in capsid self-assembly, survival of viruses in the extracellular environment, and their cell infectivity. Virus shells can have applications as nanocontainers and delivery vehicles in biotechnology and medicine. Combined AFM experiments and computational modeling on sub-second timescales of the indentation nanomechanics of Cowpea Chlorotic Mottle Virus (CCMV) capsid show that the capsid's physical properties are dynamic and local characteristics of the structure, which depend on the magnitude and geometry of mechanical input. Surprisingly, under large deformations the CCMV capsid transitions to the collapsed state without substantial local structural alterations. The enthalpy change in this deformation state dH = 11.5 - 12.8 MJ/mol is mostly due to large-amplitude out-of-plane excitations, which contribute to the capsid bending, and the entropy change TdS = 5.1 - 5.8 MJ/mol is mostly due to coherent in-plane rearrangements of protein chains, which result in the capsid stiffening. Dynamic coupling of these modes defines the extent of elasticity and reversibility of capsid mechanical deformation. This emerging picture illuminates how unique physico-chemical properties of protein nanoshells help define their structure and morphology, and determine their viruses' biological function.

  18. Ocorrência do vírus do mosqueado do morangueiro no estado de São Paulo Occurrence of the strawberry mottle virus in São Paulo

    Directory of Open Access Journals (Sweden)

    Ana Maria B. Carvalho

    1961-01-01

    Full Text Available Verificou-se a ocorrência de estirpes do vírus do grupo denominado mosqueado («strawberry mottle» em plantações de morangueiro no Estado de São Paulo. Variedades antigas, como a Dr. Morère. acham-se totalmente infetatas. sendo portadoras sem sintomas. Alguns clones novos plantados apenas por poucos anos em campo, já se acham parcialmente infetados, indicando que há transmissão da moléstia sob condições naturais. Sintomas de palidez das nervuras, mosqueado, paralisação no crescimento e encrespamento são apresentados por plantas de Fragaria vesca infetadas pelos vírus dêsse grupo. Numerosas espécies de plantas-teste habituais foram inoculadas com diferentes isolados do vírus, por meio do vetor, mas os resultados foram geralmente negativos. Afídios virulíferos, colonizados sôbre plantas novas de Cassia accidentalis, Chenopodiam quinoa, Leonotis nepaetifolia e Leonurus sibiricus. induziram o aparecimento de sintomas. Não se conseguiu retransmitir o vírus dessas espécies para F. vesca, existindo, portanto, dúvidas sôbre a verdadeira identidade do vírus que infetava tais plantas. O vírus do mosqueado não foi aparentemente transmitido pela semente. Também não se mostrou transmissível mecânicamente para Frogaria vesca. O virus obtido por inoculação com o vetor em Chenopodium quinoa e que se supõe ser o do mosqueado, pôde se transmitido mecânicamente de C. quinoa para C. quinoa. mas não para F. vesca. O pulgão Pentatrichopus fragaefolii mostrou-se eficiente vetor do mosqueado, conseguindo-se obter em média mais de 50% de infecção em infestações com 1 afidio por planta. Aphis gossypii também transmitiu o vírus do mosqueado, mas com muito menor eficiência. Não se conseguiu transmitir o mosqueado com uma espécie de Cuscuta que ocorre comumeute em Campinas. Em testes de transmissão por enxertia de fôlhas, os resultados foram muito fracos devido ao mau pegamento. O pulgão Pentatrichopus fragaefolii

  19. Completion sequence and cloning of the infectious cDNA of a chb isolate of cucumber green mottle mosaic virus.

    Science.gov (United States)

    Zhong, M; Zhao, X; Liu, Y; Wang, Y; Cao, K

    2015-03-01

    Cucumber green mottle mosaic virus (CGMMV) is an important and widespread seed-borne virus that infects Cucurbitaceous plants. It is a member of the genus Tobamovirus in the family Virgaviridae with a monopartite (+) ssRNA genome. Here we report the complete genome sequence, construction and testing of the infectious clones of a chb isolate of CGMMV. Full-length CGMMV cDNA was cloned into the vector pUC19. The linearized vector containing full-length cDNA was used as template for in vitro transcription, and the synthesized capped transcript was highly infectious in Chenopodium amaranticolor and cucumber (Cucumis sativus). Inoculated plants showed symptoms typical of CGMMV infection. The infectivity was confirmed by mechanical transmission to new plants, RT-PCR and western blot. Progeny virus derived from infectious transcripts had the same biological and biochemical properties as wild-type virus. To our knowledge, this is the first detailed report of a biologically active transcript from CGMMV.

  20. Structural transitions and energy landscape for Cowpea Chlorotic Mottle Virus capsid mechanics from nanomanipulation in vitro and in silico

    CERN Document Server

    Kononova, Olga; Brasch, Melanie; Cornelissen, Jeroen; Dima, Ruxandra I; Marx, Kenneth A; Wuite, Gijs J L; Roos, Wouter H; Barsegov, Valeri

    2015-01-01

    Physical properties of capsids of plant and animal viruses are important factors in capsid self-assembly, survival of viruses in the extracellular environment, and their cell infectivity. Virus shells can have applications as nanocontainers and delivery vehicles in biotechnology and medicine. Combined AFM experiments and computational modeling on sub-second timescales of the indentation nanomechanics of Cowpea Chlorotic Mottle Virus (CCMV) capsid show that the capsid's physical properties are dynamic and local characteristics of the structure, which depend on the magnitude and geometry of mechanical input. Surprisingly, under large deformations the CCMV capsid transitions to the collapsed state without substantial local structural alterations. The enthalpy change in this deformation state dH = 11.5 - 12.8 MJ/mol is mostly due to large-amplitude out-of-plane excitations, which contribute to the capsid bending, and the entropy change TdS = 5.1 - 5.8 MJ/mol is mostly due to coherent in-plane rearrangements of pr...

  1. Virus-Specific Read-Through Codon Preference Affects Infectivity of Chimeric Cucumber Green Mottle Mosaic Viruses Displaying a Dengue Virus Epitope

    Directory of Open Access Journals (Sweden)

    2009-03-01

    Full Text Available A Cucumber green mottle mosaic virus (CGMMV was used to present a truncated dengue virus type 2 envelope (E protein binding region from amino acids 379 to 423 (EB4. The EB4 gene was inserted at the terminal end of the CGMMV coat protein (CP open reading frame (ORF. Read-through sequences of TMV or CGMMV, CAA-UAG-CAA-UUA, or AAA-UAG-CAA-UUA were, respectively, inserted in between the CP and the EB4 genes. The chimeric clones, pRT, pRG, and pCG+FSRTRE, were transcribed into full-length capped recombinant CGMMV transcripts. Only constructs with the wild-type CGMMV read-through sequence yielded infectious viruses following infection of host plant, muskmelon (Cucumis melo leaves. The ratio of modified to unmodified CP for the read-through expression clone developed was also found to be approximately 1:1, higher than what has been previously reported. It was also observed that infectivity was not affected by differences in pI between the chimera and its wild counterpart. Analysis of recombinant viruses after 21-days-postinculation (dpi revealed that deletions occurred resulting in partial reversions of the viral population to near wild type and suggesting that this would be the limiting harvest period for obtaining true to type recombinants with this construct.

  2. Virus-specific read-through codon preference affects infectivity of chimeric cucumber green mottle mosaic viruses displaying a dengue virus epitope.

    Science.gov (United States)

    Teoh, Pak-Guan; Ooi, Aik-Seng; AbuBakar, Sazaly; Othman, Rofina Yasmin

    2009-01-01

    A Cucumber green mottle mosaic virus (CGMMV) was used to present a truncated dengue virus type 2 envelope (E) protein binding region from amino acids 379 to 423 (EB4). The EB4 gene was inserted at the terminal end of the CGMMV coat protein (CP) open reading frame (ORF). Read-through sequences of TMV or CGMMV, CAA-UAG-CAA-UUA, or AAA-UAG-CAA-UUA were, respectively, inserted in between the CP and the EB4 genes. The chimeric clones, pRT, pRG, and pCG+FSRTRE, were transcribed into full-length capped recombinant CGMMV transcripts. Only constructs with the wild-type CGMMV read-through sequence yielded infectious viruses following infection of host plant, muskmelon (Cucumis melo) leaves. The ratio of modified to unmodified CP for the read-through expression clone developed was also found to be approximately 1:1, higher than what has been previously reported. It was also observed that infectivity was not affected by differences in pI between the chimera and its wild counterpart. Analysis of recombinant viruses after 21-days-postinculation (dpi) revealed that deletions occurred resulting in partial reversions of the viral population to near wild type and suggesting that this would be the limiting harvest period for obtaining true to type recombinants with this construct.

  3. One-step reverse transcription loop-mediated isothermal amplification for the rapid detection of cucumber green mottle mosaic virus.

    Science.gov (United States)

    Li, Jin-yu; Wei, Qi-wei; Liu, Yong; Tan, Xin-qiu; Zhang, Wen-na; Wu, Jian-yan; Charimbu, Miriam Karwitha; Hu, Bai-shi; Cheng, Zhao-bang; Yu, Cui; Tao, Xiao-rong

    2013-11-01

    Cucumber green mottle mosaic virus (CGMMV) has caused serious damage to Cucurbitaceae crops worldwide. The virus is considered one of the most serious Cucurbitaceae quarantine causes in many countries. In this study, a highly efficient and practical one-step reverse transcription loop-mediated isothermal amplification (RT-LAMP) was developed for the detection of CGMMV. The total RNA or crude RNA extracted from watermelon plants or seeds could be detected easily by this RT-LAMP assay. The RT-LAMP assay was conducted in isothermal (63°C) conditions within 1h. The amplified products of CGMMV could be detected as ladder-like bands using agarose gel electrophoresis or visualized in-tube under UV light with the addition of a fluorescent dye. The RT-LAMP amplification was specific to CGMMV, as no cross-reaction was observed with other viruses. The RT-LAMP assay was 100-fold more sensitive than that of reverse-transcription polymerase chain reaction (RT-PCR). This is the first report of the application of the RT-LAMP assay to detect CGMMV. The sensitive, specific and rapid RT-LAMP assay developed in this study can be applied widely in laboratories, the field and quarantine surveillance of CGMMV.

  4. The development of an efficient multipurpose bean pod mottle virus viral vector set for foreign gene expression and RNA silencing.

    Science.gov (United States)

    Zhang, Chunquan; Bradshaw, Jeffrey D; Whitham, Steven A; Hill, John H

    2010-05-01

    Plant viral vectors are valuable tools for heterologous gene expression, and because of virus-induced gene silencing (VIGS), they also have important applications as reverse genetics tools for gene function studies. Viral vectors are especially useful for plants such as soybean (Glycine max) that are recalcitrant to transformation. Previously, two generations of bean pod mottle virus (BPMV; genus Comovirus) vectors have been developed for overexpressing and silencing genes in soybean. However, the design of the previous vectors imposes constraints that limit their utility. For example, VIGS target sequences must be expressed as fusion proteins in the same reading frame as the viral polyprotein. This requirement limits the design of VIGS target sequences to open reading frames. Furthermore, expression of multiple genes or simultaneous silencing of one gene and expression of another was not possible. To overcome these and other issues, a new BPMV-based vector system was developed to facilitate a variety of applications for gene function studies in soybean as well as in common bean (Phaseolus vulgaris). These vectors are designed for simultaneous expression of multiple foreign genes, insertion of noncoding/antisense sequences, and simultaneous expression and silencing. The simultaneous expression of green fluorescent protein and silencing of phytoene desaturase shows that marker gene-assisted silencing is feasible. These results demonstrate the utility of this BPMV vector set for a wide range of applications in soybean and common bean, and they have implications for improvement of other plant virus-based vector systems.

  5. Foliar symptoms recovery: developing scoring technique for assessment of soybean resistance to CPMMV (Cowpea Mild Mottle Virus

    Directory of Open Access Journals (Sweden)

    Siti Zubaidah

    2016-09-01

    Full Text Available Soybean is a commodity that has an important role as the source of protein, but its production is affected by various factors including disease. CpMMV (Cowpea mild mottle virus is one of the most damaging viruses that cause soybean disease. CpMMVs belong to the group of Carlavirus that are transmitted by whitefly (Bemisia tabaci. The use of CpMMV resistant plants as biological control can prevent viral diseases. Indonesia has many soybean germplasm from many regions and introduction from other countries that need to be evaluated for CpMMV. The assessment technique for soybean resistance to CpMMV is not available yet, but it is still based on other virus diseases. The specific assessment of plant resistance is important because some diseases can cause certain symptoms, depends on the resistance and the kinds of plants that are infected. This paper presents the assessment technique for soybean resistance to CpMMV infection, which can be used for various purposes and studies. One of the benefits is to find out soybean resistance to CpMMV or other objectives. This resistance assessment is not only based on leaves symptoms, but also based on the phenomenon of foliar symptoms recovery. Keywords: CpMMV, foliar symptoms recovery, scoring technique, soybean resistance.

  6. Virus-induced gene silencing in <em>Medicago truncatulaem> and <em>Lathyrus odorataem>

    DEFF Research Database (Denmark)

    Grønlund, Mette; Constantin, Gabriela; Piednoir, Elodie

    2008-01-01

    Virus-induced gene silencing (VIGS) has become an important reverse genetics tool for functional genomics. VIGS vectors based on Pea early browning virus (PEBV, genus Tobravirus) and Bean pod mottle virus (genus Comovirus) are available for the legume species Pisum sativum and Glycine max, respec...

  7. The 42-kDa coat protein of Andean potato mottle virus acts as a transcriptional activator in yeast

    Directory of Open Access Journals (Sweden)

    Vidal M.S.

    2002-01-01

    Full Text Available Interactions of viral proteins play an important role in the virus life cycle, especially in capsid assembly. Andean potato mottle comovirus (APMoV is a plant RNA virus with a virion formed by two coat proteins (CP42 and CP22. Both APMoV coat protein open reading frames were cloned into pGBT9 and pGAD10, two-hybrid system vectors. HF7c yeast cells transformed with the p9CP42 construct grew on yeast dropout selection media lacking tryptophan and histidine. Clones also exhibited ß-galactosidase activity in both qualitative and quantitative assays. These results suggest that CP42 protein contains an amino acid motif able to activate transcription of His3 and lacZ reporter genes in Saccharomyces cerevisiae. Several deletions of the CP42 gene were cloned into the pGBT9 vector to locate the region involved in this activation. CP42 constructions lacking 12 residues from the C-terminal region and another one with 267 residues deleted from the N-terminus are still able to activate transcription of reporter genes. However, transcription activation was not observed with construction p9CP42deltaC57, which does not contain the last 57 amino acid residues. These results demonstrate that a transcription activation domain is present at the C-terminus of CP42 between residues 267 and 374.

  8. Chlorotic mottle of bean (Phaseolus vulgaris L.)

    NARCIS (Netherlands)

    Jayasinghe, W.U.

    1982-01-01

    For the past years there have been outbreaks of a disease of bean ( Phaseolus vulgaris L.) in Colombia called bean chlorotic mottle. The etiology of bean chlorotic mottle was not known, but the disease was generally believed to be incited by the same whitefly-transmitted virus that causes variegatio

  9. Molecular, serological and biological characterization of the emerging tomato mottle mosaic virus on tomato

    Science.gov (United States)

    For many years, Tobacco mosaic virus (TMV) and Tomato mosaic virus (ToMV) are the two major tobamoviruses that have a serious impact on tomato productions worldwide. These seed-borne and mechanically transmitted viruses are difficult to control. The most effective disease management has been the u...

  10. Analysis of anisotropic spin-label motion in saturation-transfer ESR spectra of spin-labeled cowpea chlorotic mottle virus

    Science.gov (United States)

    Hemminga, M. A.; Faber, A. J.

    A saturation-transfer ESR study is carried out on maleimide spin-labeled cowpea chlorotic mottle virus dissolved in various glycerol-water systems. The saturation-transfer ESR spectra were analyzed by comparing them with reference spectra of isotropically reorienting spin labels. The results are interpreted in terms of the overall motion of the virus particle, described by an isotropic rotational correlation time τR, and a local anisotropic spin-label motion with rotational correlation times τ| and τ⊥.

  11. Development of Bean pod mottle virus-based vectors for stable protein expression and sequence-specific virus-induced gene silencing in soybean.

    Science.gov (United States)

    Zhang, Chunquan; Ghabrial, Said A

    2006-01-20

    Plant virus-based vectors provide valuable tools for expression of foreign proteins in plants and for gene function studies. None of the presently available virus vectors is suitable for use in soybean. In the present study, we produced Bean pod mottle virus (BPMV)-based vectors that are appropriate for gene expression and virus-induced gene silencing (VIGS) in soybean. The genes of interest were inserted into the RNA2-encoded polyprotein open reading frame between the movement protein (MP) and the large coat protein (L-CP) coding regions. Additional proteinase cleavage sites were created to flank the foreign protein by duplicating the MP/L-CP cleavage site. To minimize the chances of homologous recombination and thus insert instability, we took advantage of the genetic code degeneracy and altered the nucleotide sequence of the duplicated regions without affecting amino acid sequences. The recombinant BPMV constructs were stable following several serial passages in soybean and relatively high levels of protein expression were attained. Successful expression of several proteins with different biological activities was demonstrated from the BPMV vector. These included the reporter proteins GFP and DsRed, phosphinothricin acetyltransferase (encoded by the herbicide resistance bar gene), and the RNA silencing suppressors encoded by Tomato bushy stunt virus, Turnip crinkle virus, Tobacco etch virus, and Soybean mosaic virus. The possible use of BPMV as a VIGS vector to study gene function in soybean was also demonstrated with the phytoene desaturase gene. Our results suggest that the BPMV-based vectors are suitable for expression of foreign proteins in soybean and for functional genomics applications.

  12. The full-length clone of cucumber green mottle mosaic virus and its application as an expression system for Hepatitis B surface antigen.

    Science.gov (United States)

    Ooi, Aikseng; Tan, Sianghee; Mohamed, Rosmawati; Rahman, Noorsaadah Abdul; Othman, Rofina Yasmin

    2006-02-24

    A cucumber green mosaic mottle virus (CGMMV) full-length clone was developed for the expression of Hepatitis B surface antigen (HBsAg). The expression of the surface displayed HBsAg by the chimeric virus was confirmed through a double antibody sandwich ELISA. Assessment of the coat protein composition of the chimeric virus particles by SDS-PAGE analysis showed that 50% of the coat proteins were fused to the HBsAg. Biological activity of the expressed HBsAg was assessed through the stimulation of in vitro antibody production by cultured peripheral blood mononuclear cells (PBMC). PBMC that were cultured in the presence of the chimeric virus showed up to an approximately three-fold increase in the level of anti HBsAg immunoglobulin thus suggesting the possible use of this new chimeric virus as an effective Hepatitis B vaccine.

  13. Carnation mottle virus, an important viral agent infecting carnation cut-flower crops in Mahallat of Iran.

    Science.gov (United States)

    Safari, M; Koohi Habibi, M; Mosahebi, G; Dizadji, A

    2009-01-01

    One of the most important cut-flower crops grown worldwide on commercial scale is Carnation (Dianthus caryophyllus L.). It's the main production of Mahallat where is one of the most important ornamental plants production centers of Iran. Infection of carnation with pathogens Like viral agents causes economic losses in carnation cut-flower crop. One of the viral agents of this flower is Carnation mottle virus (CarMV) which is the type member of genus Carmovirus and belongs to the Tombusviridae family. It is naturally transmitted by grafting and contacting between plants. Although its infection lead to mild symptims, it weakens the plant to infection by other pathogens. The carnation greenhouses of Mahallat were visited during 2008 January to April and 100 samples with mild mosaic symptom were collected and tested by DAS-ELISA using CarMV specific polyclonal antibody. The results showed that 75% of samples wrere infected with this virus. Mechanical inocubation of Chenopodium quinoa, C. amaranticolor and Spinacea oleracea with extracted crude sap of CarMV infected carnation Leaves in phosphate buffer (pH, 7) resulted in appearance of chlorotic and necrotic local lesions on inoculated leaves 4-7 days after incubation. The virus was partially purified using C. amaranticolor locally symptomatic leaves. Total soluble proteins were extracted from healthy and CarMV infected C. amaranticolor plants and beside partially purified preparation electrophoresed through 15% poly acrylamide get according to SDS-PAGE standard procedure. Protein bands were electroblotted onto nitrocelluse membrane and incubated with CarMV polyclonal during western immunoblot analysis according to standard method. The result revealed a distinc protein band with Mr of 35.5 kDa in total protein preparation of infected plant and viral partial pure preparation, without any reaction in those of healthy plant. RT-PCR carried out using total RNA extracted from infected plant by Rneasy Plant Mini Kit (Qiagen

  14. Occurrence and sequences of Lily mottle virus and Lily symptomless virus in plants grown from imported bulbs in Zhejiang province, China.

    Science.gov (United States)

    Zheng, H-Y; Chen, J; Zhao, M-F; Lin, L; Chen, J-P; Antoniw, J F; Adams, M J

    2003-12-01

    Degenerate primers were used to amplify virus sequences from imported lilies in Zhejiang province, China. Two viruses, Lily mottle virus (LMoV, genus Potyvirus) and Lily symptomless virus (LSV, genus Carlavirus) were detected, purified and completely sequenced from a mixed infection in a plant raised from bulbs imported from the Netherlands. The sequence of LMoV was 9644 nt long and encoded a polyprotein of 3095 amino acids with a calculated M(r) of 351.0 kDa that had only 45.1-54.4% identity to other completely sequenced potyviruses. Phylogenetic analysis of the complete polyproteins of members of the genus demonstrated that LMoV was distantly grouped with LYSV, BYMV and ClYVV. Two partial LMoV sequences from different cultivars were identical to one another and very similar (98.3% identical nucleotides) to the corresponding region of the complete sequence. Analysis of the coat protein sequences of LMoV isolates revealed two subgroups, corresponding to the earlier "Tulip breaking virus lily strain" and "Tulip band breaking virus" isolates. Our newly-determined isolates showed an extremely close relationship to the first of these. The LSV sequence was 8393 nucleotides long and had the typical carlavirus genome organization. The ORF1 protein was most closely related to that of Blueberry scorch virus (57.2% identical amino acids). Sequences of 1796 nt at the 3'-end of three additional LSV isolates from different cultivars were very similar (>98% identical nucleotides) to the corresponding region of the complete sequence. This is the first report of complete sequences for LMoV and LSV.

  15. Structural Transitions and Energy Landscape for Cowpea Chlorotic Mottle Virus Capsid Mechanics from Nanomanipulation in Vitro and in Silico

    Science.gov (United States)

    Kononova, Olga; Snijder, Joost; Brasch, Melanie; Cornelissen, Jeroen; Dima, Ruxandra I.; Marx, Kenneth A.; Wuite, Gijs J.L.; Roos, Wouter H.; Barsegov, Valeri

    2013-01-01

    Physical properties of capsids of plant and animal viruses are important factors in capsid self-assembly, survival of viruses in the extracellular environment, and their cell infectivity. Combined AFM experiments and computational modeling on subsecond timescales of the indentation nanomechanics of Cowpea Chlorotic Mottle Virus capsid show that the capsid’s physical properties are dynamic and local characteristics of the structure, which change with the depth of indentation and depend on the magnitude and geometry of mechanical input. Under large deformations, the Cowpea Chlorotic Mottle Virus capsid transitions to the collapsed state without substantial local structural alterations. The enthalpy change in this deformation state ΔHind = 11.5–12.8 MJ/mol is mostly due to large-amplitude out-of-plane excitations, which contribute to the capsid bending; the entropy change TΔSind = 5.1–5.8 MJ/mol is due to coherent in-plane rearrangements of protein chains, which mediate the capsid stiffening. Direct coupling of these modes defines the extent of (ir)reversibility of capsid indentation dynamics correlated with its (in)elastic mechanical response to the compressive force. This emerging picture illuminates how unique physico-chemical properties of protein nanoshells help define their structure and morphology, and determine their viruses’ biological function. PMID:24138865

  16. Transmissão do Cowpea mild mottle virus pela mosca branca Bemisia tabaci biótipo B para plantas de feijão e soja Transmission of the Cowpea mild mottle virus by whitefly Bemisia tabaci biotype B for plants of beans and soy

    Directory of Open Access Journals (Sweden)

    Julio Massaharu Marubayashi

    2010-06-01

    Full Text Available A necrose da haste da soja é causada por um vírus do gênero Carlavirus transmitido pela mosca branca Bemisia tabaci, também infectante de feijão e identificado como Cowpea mild mottle virus (CpMMV. Neste trabalho foram realizados testes para determinação do número de moscas-brancas B. tabaci biótipo B necessários para transmissão do vírus em feijoeiro e soja. Na sequência foram realizados dois outros testes, com 10 insetos por planta. Avaliaram-se períodos de acesso à aquisição (PAA de 'Jalo' para 'Jalo', e o efeito de períodos de acesso à inoculação (PAI. Foram visualmente constatados sintomas típicos do carlavírus como mosaico, clareamento de nervuras, necrose sistêmica e redução de crescimento. Houve transmissão do vírus para 'BT-2' de feijão e 'BRS-132' de soja com apenas um inseto por planta, sendo mais eficaz nesta última espécie. A taxa de transmissão do vírus foi maior com o aumento do número de insetos por planta. E o PAA foi determinado após 15' de tempo para aquisição, e o PAI com 5 min e aumentando os períodos de acesso a aquisição e inoculação aumentou-se a taxa de transmissão.The stem necrosis of soybean is caused by a virus of the Carlavirus and transmitted for the whitefly Bemisia tabaci, also infectad of beans and identified as Cowpea mild mottle virus (CpMMV. In this work biotype B for transmission of the virus in beans and soy had been carried through tests for determination of the number of necessary whiteflys B. tabaci. In the sequence two other tests had been carried through, with 10 insects for plant. Periods of access to the acquisition (PAA of 'Jalo' for 'Jalo', and the effect of periods of access to the inoculation (PAI had been evaluated increase. Visually typical symptoms of carlavirus had been evidenced as mosaic, veinclearing, sistemic necrosis and reduction of growth. It had transmission of the virus for 'BT-2' of beans and 'BRS-132' of soy with only one insect for plant

  17. Rapid detection of Piper yellow mottle virus and Cucumber mosaic virus infecting black pepper (Piper nigrum) by loop-mediated isothermal amplification (LAMP).

    Science.gov (United States)

    Bhat, A I; Siljo, A; Deeshma, K P

    2013-10-01

    The loop-mediated isothermal amplification (LAMP) assay for Piper yellow mottle virus and the reverse transcription (RT) LAMP assay for Cucumber mosaic virus each consisted of a set of five primers designed against the conserved sequences in the viral genome. Both RNA and DNA isolated from black pepper were used as a template for the assay. The results were assessed visually by checking turbidity, green fluorescence and pellet formation in the reaction tube and also by gel electrophoresis. The assay successfully detected both viruses in infected plants whereas no cross-reactions were recorded with healthy plants. Optimum conditions for successful amplification were determined in terms of the concentrations of magnesium sulphate and betaine, temperature, and duration. The detection limit for both LAMP and RT-LAMP was up to 100 times that for conventional PCR and up to one-hundredth of that for real-time PCR. The optimal conditions arrived at were validated by testing field samples of infected vines of three species from different regions.

  18. Different virus-derived siRNAs profiles between leaves and fruits in Cucumber green mottle mosaic virus-infected Lagenaria siceraria

    Directory of Open Access Journals (Sweden)

    Junmin Li

    2016-11-01

    Full Text Available RNA silencing is an evolutionarily conserved antiviral mechanism, through which virus-derived small interfering RNAs (vsiRNAs playing roles in host antiviral defence are produced in virus-infected plant. Deep sequencing technology has revolutionized the study on the interaction between virus and plant host through the analysis of vsiRNAs profile. However, comparison of vsiRNA profiles in different tissues from a same host plant has been rarely reported. In this study, the profiles of virus-derived small interfering RNAs (vsiRNAs from leaves and fruits of Lagenaria siceraria plants infected with Cucumber green mottle mosaic virus (CGMMV were comprehensively characterized and compared. Many more vsiRNAs were present in infected leaves than in fruits. vsiRNAs from both leaves and fruits were mostly 21- and 22-nt in size as previously described in other virus-infected plants. Interestingly, vsiRNAs were predominantly produced from the viral positive strand RNAs in infected leaves, whereas in infected fruits they were derived equally from the positive and negative strands. Many leaf-specific positive vsiRNAs with lengths of 21-nt (2,058 or 22-nt (3,996 were identified but only six (21-nt and one (22-nt positive vsiRNAs were found to be specific to fruits. vsiRNAs hotspots were only present in the 5’-terminal and 3’-terminal of viral positive strand in fruits, while multiple hotspots were identified in leaves. Differences in GC content and 5'-terminal nucleotide of vsiRNAs were also observed in the two organs. To our knowledge, this provides the first high-resolution comparison of vsiRNA profiles between different tissues of the same host plant.

  19. Complete nucleotide sequences and construction of full-length infectious cDNA clones of Cucumber green mottle virus (CGMMV) in a versatile newly developed binary vector including both 35S and T7 promoters

    Science.gov (United States)

    Seed-transmitted viruses have caused significant damage to watermelon crops in Korea in recent years, with Cucumber green mottle mosaic virus (CGMMV) infection widespread as a result of infected seed lots. To determine the likely origin of CGMMV infection, we collected CGMMV isolates from watermelon...

  20. Development of an agroinoculation system for full-length and GFP-tagged cDNA clones of cucumber green mottle mosaic virus.

    Science.gov (United States)

    Zheng, Hongying; Xiao, Caili; Han, Kelei; Peng, Jiejun; Lin, Lin; Lu, Yuwen; Xie, Li; Wu, Xiaohua; Xu, Pei; Li, Guojing; Chen, Jianping; Yan, Fei

    2015-11-01

    The complete 6243-nucleotide sequence of a cucumber green mottle mosaic virus (CGMMV) isolate from bottle gourd in Zhejiang province, China, was determined. A full-length cDNA clone of this isolate was constructed by inserting the cDNA between the 35S promoter and the ribozyme in the binary plasmid pCB301-CH. A suspension of an Agrobacterium tumefaciens EHA105 clone carrying this construct was highly infectious in Nicotiana benthamiana and bottle gourd. Another infectious clone containing the green fluorescence protein (GFP) reporter gene was also successfully constructed. This study is the first report of the efficient use of agroinoculation for generating CGMMV infections.

  1. Comparisons of coat protein gene sequences show that East African isolates of Sweet potato feathery mottle virus form a genetically distinct group.

    Science.gov (United States)

    Kreuze, J F; Karyeija, R F; Gibson, R W; Valkonen, J P

    2000-01-01

    Sweet potato feathery mottle virus (SPFMV, genus Potyvirus) infects sweet potatoes (Ipomoea batatas) worldwide, but no sequence data on isolates from Africa are available. Coat protein (CP) gene sequences from eight East African isolates from Madagascar and different districts of Uganda (the second biggest sweet potato producer in the world) and two West African isolates from Nigeria and Niger were determined. They were compared by phylogenetic analysis with the previously reported sequences of ten SPFMV isolates from other continents. The East African SPFMV isolates formed a distinct cluster, whereas the other isolates were not clustered according to geographic origin. These data indicate that East African isolates of SPFMV form a genetically unique group.

  2. Different Virus-Derived siRNAs Profiles between Leaves and Fruits in Cucumber Green Mottle Mosaic Virus-Infected Lagenaria siceraria Plants.

    Science.gov (United States)

    Li, Junmin; Zheng, Hongying; Zhang, Chenhua; Han, Kelei; Wang, Shu; Peng, Jiejun; Lu, Yuwen; Zhao, Jinping; Xu, Pei; Wu, Xiaohua; Li, Guojing; Chen, Jianping; Yan, Fei

    2016-01-01

    RNA silencing is an evolutionarily conserved antiviral mechanism, through which virus-derived small interfering RNAs (vsiRNAs) playing roles in host antiviral defense are produced in virus-infected plant. Deep sequencing technology has revolutionized the study on the interaction between virus and plant host through the analysis of vsiRNAs profile. However, comparison of vsiRNA profiles in different tissues from a same host plant has been rarely reported. In this study, the profiles of vsiRNAs from leaves and fruits of Lagenaria siceraria plants infected with Cucumber green mottle mosaic virus (CGMMV) were comprehensively characterized and compared. Many more vsiRNAs were present in infected leaves than in fruits. vsiRNAs from both leaves and fruits were mostly 21- and 22-nt in size as previously described in other virus-infected plants. Interestingly, vsiRNAs were predominantly produced from the viral positive strand RNAs in infected leaves, whereas in infected fruits they were derived equally from the positive and negative strands. Many leaf-specific positive vsiRNAs with lengths of 21-nt (2058) or 22-nt (3996) were identified but only six (21-nt) and one (22-nt) positive vsiRNAs were found to be specific to fruits. vsiRNAs hotspots were only present in the 5'-terminal and 3'-terminal of viral positive strand in fruits, while multiple hotspots were identified in leaves. Differences in GC content and 5'-terminal nucleotide of vsiRNAs were also observed in the two organs. To our knowledge, this provides the first high-resolution comparison of vsiRNA profiles between different tissues of the same host plant.

  3. Evaluation of Plant Growth Promoting Rhizobacteria as a Protecting Agent Against Cucumber Mosaic Virus and Chilli Veinal Mottle Virus on Chillipepper

    Directory of Open Access Journals (Sweden)

    MUHAMMAD TAUFIK

    2005-12-01

    Full Text Available This study was conducted to evaluate the effectiveness of plant growth promoting rhizobacteria (PGPR in protecting chillipepper plant from infection of cucumber mosaic virus (CMV and chilli veinal mottle virus (ChiVMV. Seven isolates of PGPR, i.e. BC1, BTP2H, BTP3G, BTP3O BTP1, BTP2D, and T1F were applied as seed treatment and soil drench. Plants height, number of branch, and fruits weight were measured every one and ten weeks after virus inoculation. Virus concentration in plants and disease incidence were confirmed by enzyme-linked immunosorbant assay (ELISA. Results showed that inoculation with PGPR improved the seed germination. Eight days after sowing, the percentage of PGPR treated seed germination reached 50-84%; whereas those of untreated seed reached only 18%. In general, PGPR treatment significantly reduced (p < 0.05 the effect of virus infection on plant growth. Two PGPR isolates, i.e. BTP1 and BTP2H, maintained fruit weight of infected plants as good as those of healthy plants. Based on ELISA, PGPR was able to inhibit the disease incidence. The BTP3O and BTP2D isolates even protected the plant from ChiVMV infection. Concentration of salicylic acid and peroxidase were relatively higher on plants treated with PGPR than those without PGPR treatment. This gave an indication that PGPR may act as induction agents for systemic acquired resistance. Therefore, PGPR treatment is a promising strategy to control viral diseases on chillipepper.

  4. Virus-induced gene silencing and transient gene expression in soybean using Bean pod mottle virus infectious clones

    Science.gov (United States)

    Virus-induced gene silencing (VIGS) is a powerful and rapid approach for determining the functions of plant genes. The basis of VIGS is that a viral genome is engineered so that it can carry fragments of plant genes, typically in the 200-300 base pair size range. The recombinant viruses are used to ...

  5. 江苏黄瓜绿斑驳花叶病毒的鉴定%Identification of cucumber green mottle mosaic virus in Jiangsu

    Institute of Scientific and Technical Information of China (English)

    任春梅; 程兆榜; 缪倩; 王锋; 张重阳; 徐冬青; 周益军

    2013-01-01

    为确定从江苏省洪泽县大棚西瓜、仪征市露地瓠瓜、东台市露地南瓜上采集到3个表现为褪绿、斑驳花叶症状的病样是否为黄瓜绿斑驳花叶病毒(CGMMV)侵染,采用电子镜观察、RT-PCR和序列测定方法对其进行鉴定.电子显微镜下可见300 nm×18 nm大小的直杆状病毒粒子.根据已报道的CGMMV外壳蛋白质(cp)基因序列合成特异性引物,对所提取病样的总RNA进行RT-PCR扩增,3个分离物的RNA模板中均可扩增到大小为500bp左右的DNA片段,测序结果表明3个分离物的片段均含有486个核苷酸,包含完整的cp基因,编码161个氨基酸.3个分离物与已报道的7个CGMMV分离物核苷酸及其所推导的氨基酸序列同源性分别为91.8% ~99.8%和98.1%~100.0%,与同属的其他3个病毒(Kyuri绿斑驳花叶病毒、黄瓜果实斑驳花叶病毒和小西葫芦绿斑驳花叶病毒)cp基因核苷酸及其所推导的氨基酸序列同源性分别为40.7%~ 54.7%和44.4% ~60.2%,表明所采集的3个病样由CGMMV侵染引起.%This study was performed to identify three isolates with chlorisis and mottle mosaic symptom collected from greenhouse watermelon in Hongze of Jiangsu, openground gourd in Yizheng of Jiangsu and openground pumpkin in Dongtai of Jiangsu. Straight rod virus particles with size of 300 nm×18 nm were shown under the electron micrograph in the crude extract of above isolates. Total RNA were amplified by RT-PCR with the specific primers designed on the basis of the reported coat protein ( cp) gene of cucumber green mottle mosaic virus( CGMMV) . An 500-bp gene fragment was amplified from total RNA of all three isolates, and subsequent sequence analysis indicated that the 486 bp fragment contained complete cp gene which encoded 161 amino acids. The nucleotides and deduced amino acid sequences of the cp genes from these isolates shared homologies from 91. 8% to 99. 8% and from 98. 1% to 100. 0% with 7 reported CGMMV

  6. A simple method for screening of plant NBS-LRR genes that confer a hypersensitive response to plant viruses and its application for screening candidate pepper genes against Pepper mottle virus.

    Science.gov (United States)

    Tran, Phu-Tri; Choi, Hoseong; Kim, Saet-Byul; Lee, Hyun-Ah; Choi, Doil; Kim, Kook-Hyung

    2014-06-01

    Plant NBS-LRR genes are abundant and have been increasingly cloned from plant genomes. In this study, a method based on agroinfiltration and virus inoculation was developed for the simple and inexpensive screening of candidate R genes that confer a hypersensitive response to plant viruses. The well-characterized resistance genes Rx and N, which confer resistance to Potato virus X (PVX) and tobamovirus, respectively, were used to optimize a transient expression assay for detection of hypersensitive response in Nicotiana benthamiana. Infectious sap of PVX and Tobacco mosaic virus were used to induce hypersensitive response in Rx- and N-infiltrated leaves, respectively. The transient expression of the N gene induced local hypersensitive response upon infection of another tobamovirus, Pepper mild mottle virus, through both sap and transcript inoculation. When this method was used to screen 99 candidate R genes from pepper, an R gene that confers hypersensitive response to the potyvirus Pepper mottle virus was identified. The method will be useful for the identification of plant R genes that confer resistance to viruses. Copyright © 2014 Elsevier B.V. All rights reserved.

  7. Identification of Watermelon silver mottle virus infecting watermelon in Yunnan%云南西瓜银灰斑驳病毒病害的鉴定

    Institute of Scientific and Technical Information of China (English)

    尹跃艳; 卢训; 李婷婷; 李红祥; 郭淼; 赵丽玲; 张晓云; 丁铭

    2016-01-01

    应用DAS-ELISA和RT-PCR方法从褪绿和银色斑驳的西瓜叶片中检测到病毒分离物(WSMoV-YN),感病样品能与WSMoV/GBNV复合抗血清(Agdia)呈阳性反应.获得WSMoV N蛋白的多克隆抗体,抗体能与WSMoV血清组成员CaCV和TZSV反应,但不能与INSV、TSWV、HCRV和GYSV反应.为明确引起该病害的病毒种类,采用Tospovirus通用引物对样品的总RNA进行RT-PCR扩增,获得长度为3 554 nt的S RNA全序列,经Blastn比对分析与WSMoV中国台湾分离物同源性最高,为95.8%,其N和NSs蛋白氨基酸序列同源性分别为99%和97.6%.构建系统进化树发现,西瓜银灰斑驳病毒云南分离物(WSMoV-YN)与其他WSMoV聚为一支.确定引起云南西瓜病害的病毒为WSMoV.%Using DAS-ELISA and RT-PCR,a viral isolate (WSMoV-YN) was detected in watermelon showing chlorotic and silver mottle.Diseased samples were positive for antibodies to Watermelon silver mottle virus (WSMoV) and Groundnut bud necrosis virus (GBNV) (Agdia,USA).The polyclonal antiserum of N protein were obtained and could react with Capsicum chlorosis virus (CaCV) and Tomato zonate spot virus (TZSV),the members of Watermelon silver mottle virus (WSMoV) serogroup,but not react with Impatiens necrotic spot virus (INSV),Tomato spotted wilt virus (TSWV),Hippeastrum chlorotic ringspot virus (HCRV) and Groundnut yellow spot virus (GYSV).To further confirm the presence of WSMoV,the samples were examined by RTPCR using tospovirus universal primer pairs.Full-length sequence of WSMoV-YN S RNA with a length of 3 554 nt was obtained and sequence alignment indicated that WSMoV-YN shares 95.8% identity with WSMoV isolates from Taiwan,China (NC_003843) at the nucleotide level.The nucleocapsid protein (N) and non-structual (NSs) shared 99% and 97.6% amion acid identity with the Taiwan (China) isolates,respectively.Taken together,our results suggested that the WSMoV-YN formed a distinct cluster with the other WSMoV isolates.

  8. Complete nucleotide sequences and construction of full-length infectious cDNA clones of cucumber green mottle mosaic virus (CGMMV) in a versatile newly developed binary vector including both 35S and T7 promoters.

    Science.gov (United States)

    Park, Chan-Hwan; Ju, Hye-Kyoung; Han, Jae-Yeong; Park, Jong-Seo; Kim, Ik-Hyun; Seo, Eun-Young; Kim, Jung-Kyu; Hammond, John; Lim, Hyoun-Sub

    2017-04-01

    Seed-transmitted viruses have caused significant damage to watermelon crops in Korea in recent years, with cucumber green mottle mosaic virus (CGMMV) infection widespread as a result of infected seed lots. To determine the likely origin of CGMMV infection, we collected CGMMV isolates from watermelon and melon fields and generated full-length infectious cDNA clones. The full-length cDNAs were cloned into newly constructed binary vector pJY, which includes both the 35S and T7 promoters for versatile usage (agroinfiltration and in vitro RNA transcription) and a modified hepatitis delta virus ribozyme sequence to precisely cleave RNA transcripts at the 3' end of the tobamovirus genome. Three CGMMV isolates (OMpj, Wpj, and Mpj) were separately evaluated for infectivity in Nicotiana benthamiana, demonstrated by either Agroinfiltration or inoculation with in vitro RNA transcripts. CGMMV nucleotide identities to other tobamoviruses were calculated from pairwise alignments using DNAMAN. CGMMV identities were 49.89% to tobacco mosaic virus; 49.85% to pepper mild mottle virus; 50.47% to tomato mosaic virus; 60.9% to zucchini green mottle mosaic virus; and 60.96% to kyuri green mottle mosaic virus, confirming that CGMMV is a distinct species most similar to other cucurbit-infecting tobamoviruses. We further performed phylogenetic analysis to determine relationships of our new Korean CGMMV isolates to previously characterized isolates from Canada, China, India, Israel, Japan, Korea, Russia, Spain, and Taiwan available from NCBI. Analysis of CGMMV amino acid sequences showed three major clades, broadly typified as 'Russian,' 'Israeli,' and 'Asian' groups. All of our new Korean isolates fell within the 'Asian' clade. Neither the 128 nor 186 kDa RdRps of the three new isolates showed any detectable gene silencing suppressor function.

  9. Comparison of three magnetic-bead-based RNA extraction methods for detection of cucumber green mottle mosaic virus by real-time RT-PCR.

    Science.gov (United States)

    Zhao, Xiaoli; Zhou, Qi; Zhang, Lijie; Yan, Wenlong; Sun, Ning; Liang, Xinmiao; Deng, Congliang

    2015-07-01

    To determine the efficiency of RNA extraction methods based on magnetic beads, three different bead-based methods (one using silica-coated magnetic beads [SMNP], one using immunomagnetic beads conjugated to a specific antibody [IMB], and one using magnetic beads to nonspecifically adsorb virions [MNP]) were compared with the TRIzol method for the extraction of cucumber green mottle mosaic virus (CGMMV) RNA from cucumber leaves by real-time RT-PCR. The results indicated that the extraction efficiency of the SMNP method was 10 times higher than those of the IMB and MNP methods and 100 times higher than that of the TRIzol method. Therefore, the SMNP method could be considered for use in quarantine measures for the prevention and control of the disease caused by CGMMV.

  10. Identification of the subgenomic promoter of the coat protein gene of cucumber fruit mottle mosaic virus and development of a heterologous expression vector.

    Science.gov (United States)

    Rhee, Sun-Ju; Jang, Yoon Jeong; Lee, Gung Pyo

    2016-06-01

    Heterologous gene expression using plant virus vectors enables research on host-virus interactions and the production of useful proteins, but the host range of plant viruses limits the practical applications of such vectors. Here, we aimed to develop a viral vector based on cucumber fruit mottle mosaic virus (CFMMV), a member of the genus Tobamovirus, whose members infect cucurbits. The subgenomic promoter (SGP) in the coat protein (CP) gene, which was used to drive heterologous expression, was mapped by analyzing deletion mutants from a CaMV 35S promoter-driven infectious CFMMV clone. The region from nucleotides (nt) -55 to +160 relative to the start codon of the open reading frame (ORF) of CP was found to be a fully active promoter, and the region from nt -55 to +100 was identified as the active core promoter. Based on these SGPs, we constructed a cloning site in the CFMMV vector and successfully expressed enhanced green fluorescent protein (EGFP) in Nicotiana benthamiana and watermelon (Citrullus lanatus). Co-inoculation with the P19 suppressor increased EGFP expression and viral replication by blocking degradation of the viral genome. Our CFMMV vector will be useful as an expression vector in cucurbits.

  11. High-level HIV-1 Nef transient expression in Nicotiana benthamiana using the P19 gene silencing suppressor protein of Artichoke Mottled Crinckle Virus

    Directory of Open Access Journals (Sweden)

    Bianco Linda

    2009-11-01

    Full Text Available Abstract Background In recent years, different HIV antigens have been successfully expressed in plants by either stable transformation or transient expression systems. Among HIV proteins, Nef is considered a promising target for the formulation of a multi-component vaccine due to its implication in the first steps of viral infection. Attempts to express Nef as a single protein product (not fused to a stabilizing protein in transgenic plants resulted in disappointingly low yields (about 0.5% of total soluble protein. In this work we describe a transient expression system based on co-agroinfiltration of plant virus gene silencing suppressor proteins in Nicotiana benthamiana, followed by a two-step affinity purification protocol of plant-derived Nef. Results The effect of three gene silencing viral suppressor proteins (P25 of Potato Virus X, P19 of either Artichoke Mottled Crinckle virus and Tomato Bushy Stunt virus on Nef transient expression yield was evaluated. The P19 protein of Artichoke Mottled Crinckle virus (AMCV-P19 gave the highest expression yield in vacuum co-agroinfiltration experiments reaching 1.3% of total soluble protein, a level almost three times higher than that previously reported in stable transgenic plants. The high yield observed in the co-agroinfiltrated plants was correlated to a remarkable decrease of Nef-specific small interfering RNAs (siRNAs indicating an effective modulation of RNA silencing mechanisms by AMCV-P19. Interestingly, we also showed that expression levels in top leaves of vacuum co-agroinfiltrated plants were noticeably reduced compared to bottom leaves. Moreover, purification of Nef from agroinfiltrated tissue was achieved by a two-step immobilized metal ion affinity chromatography protocol with yields of 250 ng/g of fresh tissue. Conclusion We demonstrated that expression level of HIV-1 Nef in plant can be improved using a transient expression system enhanced by the AMCV-P19 gene silencing suppressor

  12. "Mancha-cafe" em soja: seleção para resistência e interação entre genótipos e épocas de inoculação Seedcoat mottling in soybeans: selection for resistance and interaction between genotypes and inoculation date

    Directory of Open Access Journals (Sweden)

    André Luiz Lourençao

    1996-01-01

    infectadas no estádio vegetativo. Esses resultados fortalecem a diretriz utilizada no programa de melhoramento da Seção de Leguminosas do IAC: a de eliminar plantas e/ou linhagens com incidência de "mancha-café".The soybean mosaic virus (SMV is widespread in all soybean production areas. The mottled brown seed is the most characteristic symptom under our conditions, so in Brazil the disease was called "mancha-café" (coffee-spot. The mottling was the main limiting factor to the seed production in the certification system. The present paper had two objetives: screenning lines with different levels of mottled seeds, and to verify the interaction between selected genotypes and inoculation dates. During 1987, 131 F4:5 experimental lines from the cross IAC78-2318 x Santa Rosa, both susceptible to SMV, were evaluated under field conditions in Campinas (SP, Brazil. In the next year, seventeen selected lines plus the cultivars Santa Rosa, representing the five levels of mottling were planted again under field conditions in randomized complete-block design, with six replications. The results showed that the screenning realized in the field was efficient to identify the lines with different levels of mottled seeds. It was also observed that this characteristic was not much influenced by environmental effects as indicated by the positive and high correlation between diseases notes of both years, as well as the low value of the coefficient of variation. An additional study was carried out under greenhouse conditions to evaluate genotypes in distinct growth stages when mechanically inoculated with the virus. It consisted of a factorial experiment, involving a non-inoculated control, three inoculation times, and five lines representing notes from 1 to 5, plus the cultivars Santa Rosa, IAC-Santa Rosa PC and IAC-Santa Rosa DF. The genotypes were sowed in plastic bags and at the maturity, the following evaluations were made: the mottled seed rate, seed production (g/3 plants, mass (g of

  13. Characterization of burdock mottle virus, a novel member of the genus Benyvirus, and the identification of benyvirus-related sequences in the plant and insect genomes.

    Science.gov (United States)

    Kondo, Hideki; Hirano, Shuichi; Chiba, Sotaro; Andika, Ida Bagus; Hirai, Makoto; Maeda, Takanori; Tamada, Tetsuo

    2013-10-01

    The complete nucleotide sequence of the burdock mottle virus (BdMoV) isolated from an edible burdock plant (Arctium lappa) in Japan has been determined. BdMoV has a bipartite genome, whose organization is similar to RNA1 and RNA2 of benyviruses, beet necrotic yellow vein virus (BNYVV), beet soil-borne mosaic virus (BSBMV), and rice stripe necrosis virus (RSNV). BdMoV RNA1 (7038 nt) contains a single open reading frame (ORF) encoding a 249-kDa polypeptide that consists of methyl-transferase, helicase, papain-like protease, AlkB-like, and RNA-dependent RNA polymerase domains. The AlkB-like domain sequence is not present in the proteins encoded by other known benyviruses, but is found in replication-associated proteins of viruses mainly belonging to the families Alfaflexiviridae and Betaflexiviridae. BdMoV RNA2 (4315 nt) contains six ORFs that are similar to those of benyviruses: these are coat protein (CP), CP readthrough, triple gene block movement and cysteine-rich proteins. Phylogenetic analyses showed that BdMoV is more closely related to BNYVV and BSBMV than to RSNV. Database searches showed that benyvirus replicase-related sequences are present in the chromosomes of a chickpea plant (Cicer arietinum) and a blood-sucking insect (Rhodnius prolixus). Some other benyvirus-related sequences are found in the transcriptome shotgun libraries of a few species of plants and a bark beetle. Our results show that BdMoV is a distinct species of the genus Benyvirus and that ancestral and extant benyviruses may have infected or currently infect a wide range of hosts, including plants and insects.

  14. 香石竹斑驳病毒(CarMV)的研究进展%Research Progress of Carnation mottle Virus(CarMV)

    Institute of Scientific and Technical Information of China (English)

    佟爱仔; 孔宝华; 陈海如

    2011-01-01

    Carnation mottle virus (CarMV) is a very important virus infecting carnation, CarMV severely affect the yield and quality of the fresh carnation and affect the economic value and import and export trade. A large amount of studies has been reported till now, in order to study CarMV systematically, in this paper the research progress of CarMV was proposed from aspects of etiology, serology, molecular biology, occurrence, detection and prevention and cure methods of CarMV disease.%香石竹斑驳病毒(CarMV)是侵染香石竹的主要病毒之一,严重影响香石竹切花产量与品质,影响其经济价值和进出口贸易.目前对香石竹斑驳病毒已有大量研究,为系统了解该病毒,笔者从CarMV的病原学、血清学和分子生物学,CarMV病害发生与检测及CarMV防治方法等方面综述了CarMV的研究现状.

  15. Processes of diversification and dispersion of rice yellow mottle virus inferred from large-scale and high-resolution phylogeographical studies.

    Science.gov (United States)

    Traore, O; Sorho, F; Pinel, A; Abubakar, Z; Banwo, O; Maley, J; Hebrard, E; Winter, S; Sere, Y; Konate, G; Fargette, D

    2005-06-01

    Phylogeography of Rice yellow mottle virus (RYMV) was reconstructed from the coat protein gene sequences of a selection of 173 isolates from the 14 countries of mainland Africa where the disease occurred and from the full sequences of 16 representative isolates. Genetic variation was linked to geographical distribution and not to host species as isolates from wild rice always clustered with isolates from cultivated rice of the same region. Genetic variation was not associated to agro-ecology, viral interference and insect vector species. Distinct RYMV lineages occurred in East, Central and West Africa, although the Central African lineage included isolates from Benin, Togo and Niger at the west, adjacent to countries of the West African lineage. Genetic subdivision at finer geographical scales was apparent within lineages of Central and West Africa, although less pronounced than in East Africa. Physical obstacles, but also habitat fragmentation, as exemplified by the small low-lying island of Pemba offshore Tanzania mainland, explained strain localization. Three new highly divergent strains were found in eastern Tanzania. By contrast, intensive surveys in Cote d'Ivoire and Guinea at the west of Africa did not reveal any new variant. Altogether, this supported the view that the Eastern Arc Mountains biodiversity hotspot was the centre of origin of RYMV and that the virus spread subsequently from east to west across Africa. In West Africa, specific strains occurred in the Inner Niger Delta and suggested it was a secondary centre of diversification. Processes for diversification and dispersion of RYMV are proposed.

  16. Two basic (hydrophilic) regions in the movement protein of Parietaria mottle virus have RNA binding activity and are required for cell-to-cell transport.

    Science.gov (United States)

    Martínez, Carolina; Coll-Bonfill, Nuria; Aramburu, Jose; Pallás, Vicente; Aparicio, Frederic; Galipienso, Luis

    2014-05-12

    The movement protein (MP) of parietaria mottle virus (PMoV) is required for virus cell-to-cell movement. Bioinformatics analysis identified two hydrophilic non-contiguous regions (R1 and R2) rich in the basic amino acids lysine and arginine and with the predicted secondary structure of an α-helix. Different approaches were used to determine the implication of the R1 and R2 regions in RNA binding, plasmodesmata (PD) targeting and cell-to-cell movement. EMSA (Electrophoretic Mobility Shift Assay) showed that both regions have RNA-binding activity whereas that mutational analysis reported that either deletion of any of these regions, or loss of the basic amino acids, interfered with the viral intercellular movement. Subcellular localization studies showed that PMoV MP locates at PD. Mutants designed to impeded cell-to-cell movement failed to accumulate at PD indicating that basic residues in both R1 and R2 are critical for binding the MP at PD.

  17. Occurrence of Pepper Mild Mottle Virus (PMMoV) in Groundwater from a Karst Aquifer System in the Yucatan Peninsula, Mexico.

    Science.gov (United States)

    Rosiles-González, Gabriela; Ávila-Torres, Gerardo; Moreno-Valenzuela, Oscar A; Acosta-González, Gilberto; Leal-Bautista, Rosa María; Grimaldo-Hernández, Cinthya D; Brown, Judith K; Chaidez-Quiroz, Cristóbal; Betancourt, Walter Q; Gerba, Charles P; Hernández-Zepeda, Cecilia

    2017-06-23

    The Yucatan Peninsula of Mexico hosts a karst aquifer system that is the only source of freshwater for the area; however, it is vulnerable to human-mediated contamination. Pepper mild mottle virus (PMMoV) is one of the most abundant RNA viruses associated with human feces, making it a viable indicator for tracking fecal pollution in aquatic environments, including groundwater. In this study, groundwater samples collected from a karst aquifer from fresh and brackish water locations were analyzed for fecal indicator bacteria, somatic and male F+ specific coliphages, and PMMoV during the rainy and dry seasons. Total coliform bacteria were detected at all sites, whereas Escherichia coli were found at relatively low levels water type (p > 0.05). Physicochemical and indicator bacteria were not correlated with PMMoV concentrations. The abundance and prevalence of PMMoV in the karst aquifer may reflect its environmental persistence and its potential as a fecal indicator in this karst aquifer system.

  18. One-step detection of Bean pod mottle virus in soybean seeds by the reverse-transcription loop-mediated isothermal amplification

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    Wei Qi-Wei

    2012-09-01

    Full Text Available Abstract Background Bean pod mottle virus (BPMV is a wide-spread and destructive virus that causes huge economic losses in many countries every year. A sensitive, reliable and specific method for rapid surveillance is urgently needed to prevent further spread of BPMV. Methods A degenerate reverse-transcription loop-mediated isothermal amplification (RT-LAMP primer set was designed on the conserved region of BPMV CP gene. The reaction conditions of RT-LAMP were optimized and the feasibility, specificity and sensitivity of this method to detect BPMV were evaluated using the crude RNA rapidly extracted from soybean seeds. Results The optimized RT-LAMP parameters including 6 mM MgCl2, 0.8 M betaine and temperature at 62.5-65°C could successfully amplify the ladder-like bands from BPMV infected soybean seeds. The amplification was very specific to BPMV that no cross-reaction was observed with other soybean viruses. Inclusion of a fluorescent dye makes it easily be detected in-tube by naked eye. The sensitivity of RT-LAMP assay is higher than the conventional RT-PCR under the conditions tested, and the conventional RT-PCR couldn’t be used for detection of BPMV using crude RNA extract from soybean seeds. Conclusion A highly efficient and practical method was developed for the detection of BPMV in soybean seeds by the combination of rapid RNA extraction and RT-LAMP. This RT-LAMP method has great potential for rapid BPMV surveillance and will assist in preventing further spread of this devastating virus.

  19. Identification and control measures of cucumber green mottle mosaic virus in Shanghai suburbs%上海郊区黄瓜绿斑驳花叶病毒的鉴定和防治对策

    Institute of Scientific and Technical Information of China (English)

    胡亚萍; 董萍; 赵驾浩; 张艇; 于子翔; 于翠; 杨翠云

    2013-01-01

    在上海市浦东新区孙桥蔬菜基地温室内发现大量黄瓜植株发病,叶片出现花叶、斑驳、皱缩和变形等症状,发病率达50%以上.经DAS-ELISA、RT-PCR和摩擦接种试验鉴定,发现引起黄瓜发病的病原生物是黄瓜绿斑驳花叶病毒(Cucumber green mottle mosaic virus),并提出了防治对策.%It was found that a large quantity of cucumber plants in the Sunqiao Vegetables Base' s greenhouses had mosaic,mottle,shrinking and deformation symptoms on leaves and the disease incidence was over 50%.The DAS-ELISA,RT-PCR and biological inoculation tests for them showed that the pathogen of the diseased plants was cucumber green mottle mosaic virus (CGMMV). It was the first time to find this quarantine virus in Shanghai suburbs,and some control measures were proposed.

  20. Research progress in management of Cucumber green mottle mosaic virus%黄瓜绿斑驳花叶病毒病防治研究进展

    Institute of Scientific and Technical Information of China (English)

    刘华威; 罗来鑫; 朱春雨; 梁超琼; 刘鹏飞; 李健强

    2016-01-01

    黄瓜绿斑驳花叶病毒(Cucumber green mottle mosaic virus ,CGMMV)主要危害葫芦科作物,已被世界上许多国家和地区列为检疫性有害生物。CGMMV 目前在我国23个省、市、区已有报道发生和危害,严重影响葫芦科作物的生产;近年来该病害在国内外呈现迅猛扩展的趋势并对生产造成危害。本文综述了防治该病害的种子处理、化学及生物防治、嫁接以及转基因等分子生物学方法;分析了 CGMMV 与寄主黄瓜互作研究的最新进展,对小分子RNA 参与调控寄主对 CGMMV 病毒的防控策略提出了展望,并概述了下一代测序技术、基因编辑技术在植物新病毒的检测、鉴定以及培育抗病新品种等方面的应用。%Cucumber green mottle mosaic virus (CGMMV)causes devastating disease on cucurbits,and it has been listed as quarantine pathogen in many countries in the world.It was reported in at least 23 provinces in China, causing substantial yield losses and lower market value of cucurbits.This review summarized the current control methods of CGMMV and tried to explore the novel control strategies,including next-generation sequencing (NGS)and gene-editing technology for viral diagnostics and identification,and miRNA mediated-resistance to CGMMV infection.

  1. High-Throughput Sequencing Identifies Novel and Conserved Cucumber (Cucumis sativus L.) microRNAs in Response to Cucumber Green Mottle Mosaic Virus Infection.

    Science.gov (United States)

    Liu, H W; Luo, L X; Liang, C Q; Jiang, N; Liu, P F; Li, J Q

    2015-01-01

    Seedlings of Cucumis sativus L. (cv. 'Zhongnong 16') were artificially inoculated with Cucumber green mottle mosaic virus (CGMMV) at the three-true-leaf stage. Leaf and flower samples were collected at different time points post-inoculation (10, 30 and 50 d), and processed by high throughput sequencing analysis to identify candidate miRNA sequences. Bioinformatic analysis using screening criteria, and secondary structure prediction, indicated that 8 novel and 23 known miRNAs (including 15 miRNAs described for the first time in vivo) were produced by cucumber plants in response to CGMMV infection. Moreover, gene expression profiles (p-value cucumbers. Gene ontology (GO) analysis revealed that the predicted target genes of these 88 miRNAs, which were screened using the psRNATarget and miRanda algorithms, were involved in three functional categories: 2265 in molecular function, 1362 as cellular components and 276 in biological process. The subsequent Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis revealed that the predicted target genes were frequently involved in metabolic processes (166 pathways) and genetic information processes (40 pathways) and to a lesser degree the biosynthesis of secondary metabolites (12 pathways). These results could provide useful clues to help elucidate host-pathogen interactions in CGMMV and cucumber, as well as for the screening of resistance genes.

  2. Faecal pollution along the southeastern coast of Florida and insight into the use of pepper mild mottle virus as an indicator.

    Science.gov (United States)

    Symonds, E M; Sinigalliano, C; Gidley, M; Ahmed, W; McQuaig-Ulrich, S M; Breitbart, M

    2016-11-01

    To identify faecal pollution along the southeastern Florida coast and determine the performance of a reverse transcription-quantitative polymerase chain reaction (RT-qPCR) method for pepper mild mottle virus (PMMoV). In 2014, bimonthly surface water samples were collected from inlets, exposed to runoff and septic seepage, and coastal sites, exposed to ocean outfalls. Analysis of culturable enterococci and a suite of microbial source tracking (MST) markers (BacHum, CowM2, DogBact, HF183, HPyV, PMMoV) revealed faecal pollution, primarily of human origin, at all sites. Since PMMoV was detected more frequently than other MST markers, the process limits of quantification (undiluted to 10(-2) dilution) and detection (10(-2) dilution) for the RT-qPCR method were determined by seeding untreated wastewater into the coastal waters. Simulated quantitative microbial risk assessment, employing human norovirus as a reference pathogen, calculated a 0·286 median risk of gastrointestinal illness associated with the PMMoV limit of detection. All sites met the U.S. EPA recreational water criteria, despite detection of domestic wastewater-associated MST markers. PMMoV correlated only with human-associated MST markers. This study demonstrated that PMMoV is an important domestic wastewater-associated marker that should be included in the MST toolbox; therefore, future studies should thoroughly investigate the health risks associated with its detection and quantification in environmental waters. © 2016 The Society for Applied Microbiology.

  3. Structural Transitions and Energy Landscape for Cowpea Chlorotic Mottle Virus Capsid Mechanics from Nanomanipulation in Vitro and in Silico

    NARCIS (Netherlands)

    Kononova, Olga; Snijder, Joost; Brasch, Melanie; Cornelissen, Jeroen; Dima, Ruxandra I.; Marx, Kenneth A.; Wuite, Gijs J. L.; Roos, Wouter H.; Barsegov, Valeri

    2013-01-01

    Physical properties of capsids of plant and animal viruses are important factors in capsid self-assembly, survival of viruses in the extracellular environment, and their cell infectivity. Combined AFM experiments and computational modeling on subsecond timescales of the indentation nanomechanics of

  4. Effect of Raspberry bushy dwarf virus, Raspberry leaf mottle virus, and Raspberry latent virus on plant growth and fruit crumbliness in ‘Meeker’ red Raspberry

    Science.gov (United States)

    Raspberry crumbly fruit in red raspberry (Rubus idaeus L.), widespread in the Pacific Northwest of the United States and British Columbia, Canada, is most commonly caused by a virus infection. Raspberry bushy dwarf virus (RBDV) has long been attributed as the causal agent of the disease. Recently, t...

  5. Evaluation of a SUMO E2 conjugating enzyme involved in resistance to Clavibacter michiganensis subsp. michiganensis in Solanum peruvianum, through a tomato mottle virus VIGS assay

    Directory of Open Access Journals (Sweden)

    Mayra Janeth Esparza-Araiza

    2015-12-01

    Full Text Available Clavibacter michiganensis subsp. michiganensis (Cmm causes bacterial wilt and canker of tomato. Currently, no Solanum lycopersicum resistant varieties are commercially available, but some degree of Cmm resistance has been identified in Solanum peruvianum. Previous research showed up-regulation of a SUMO E2 conjugating enzyme (SCEI transcript in resistant S. peruvianum compared to susceptible S. lycopersicum following infection by Cmm. In order to test the role of SCEI in resistance to Cmm, a fragment of the gene from S. peruvianum was cloned into a novel virus-induced gene-silencing (VIGS vector based on the geminivirus Tomato Mottle Virus (ToMoV. Using biolistic inoculation, the ToMoV-based VIGS vector was shown to be effective in S. peruvianum by silencing the magnesium chelatase gene, which resulted in leaf bleaching. The ToMoV_SCEI construct resulted in approx. 61% silencing of SCEI in leaves of S. peruvianum as determined by quantitative RT-PCR. VIGS of SCEI in S. peruvianum resulted in unilateral wilting (15 dpi and subsequent death (20 dpi of the entire plant after Cmm inoculation, whereas empty vector-treated plants only showed wilting in the Cmm-inoculated leaf. SCEI-silenced plants also showed higher Cmm colonization with an average of 4.5 times more damaged tissue compared to the empty vector control plants. SCEI appears to play an important role in the innate immunity of S. peruvianum against Cmm, perhaps through the regulation of WRKY transcription factors, which may lead to expression of proteins involved in salicylic acid-dependent defense responses.

  6. Evaluation of a SUMO E2 Conjugating Enzyme Involved in Resistance to Clavibacter michiganensis Subsp. michiganensis in Solanum peruvianum, Through a Tomato Mottle Virus VIGS Assay.

    Science.gov (United States)

    Esparza-Araiza, Mayra J; Bañuelos-Hernández, Bernardo; Argüello-Astorga, Gerardo R; Lara-Ávila, José P; Goodwin, Paul H; Isordia-Jasso, María I; Castillo-Collazo, Rosalba; Rougon-Cardoso, Alejandra; Alpuche-Solís, Ángel G

    2015-01-01

    Clavibacter michiganensis subsp. michiganensis (Cmm) causes bacterial wilt and canker of tomato. Currently, no Solanum lycopersicum resistant varieties are commercially available, but some degree of Cmm resistance has been identified in Solanum peruvianum. Previous research showed up-regulation of a SUMO E2 conjugating enzyme (SCEI) transcript in S. peruvianum compared to S. lycopersicum following infection with Cmm. In order to test the role of SCEI in resistance to Cmm, a fragment of SCEI from S. peruvianum was cloned into a novel virus-induced gene-silencing (VIGS) vector based on the geminivirus, Tomato Mottle Virus (ToMoV). Using biolistic inoculation, the ToMoV-based VIGS vector was shown to be effective in S. peruvianum by silencing the magnesium chelatase gene, resulting in leaf bleaching. VIGS with the ToMoV_SCEI construct resulted in ~61% silencing of SCEI in leaves of S. peruvianum as determined by quantitative RT-PCR. The SCEI-silenced plants showed unilateral wilting (15 dpi) and subsequent death (20 dpi) of the entire plant after Cmm inoculation, whereas the empty vector-treated plants only showed wilting in the Cmm-inoculated leaf. The SCEI-silenced plants showed higher Cmm colonization and an average of 4.5 times more damaged tissue compared to the empty vector control plants. SCEI appears to play an important role in the innate immunity of S. peruvianum against Cmm, perhaps through the regulation of transcription factors, leading to expression of proteins involved in salicylic acid-dependent defense responses.

  7. High-Throughput Sequencing Identifies Novel and Conserved Cucumber (Cucumis sativus L. microRNAs in Response to Cucumber Green Mottle Mosaic Virus Infection.

    Directory of Open Access Journals (Sweden)

    H W Liu

    Full Text Available Seedlings of Cucumis sativus L. (cv. 'Zhongnong 16' were artificially inoculated with Cucumber green mottle mosaic virus (CGMMV at the three-true-leaf stage. Leaf and flower samples were collected at different time points post-inoculation (10, 30 and 50 d, and processed by high throughput sequencing analysis to identify candidate miRNA sequences. Bioinformatic analysis using screening criteria, and secondary structure prediction, indicated that 8 novel and 23 known miRNAs (including 15 miRNAs described for the first time in vivo were produced by cucumber plants in response to CGMMV infection. Moreover, gene expression profiles (p-value <0.01 validated the expression of 3 of the novel miRNAs and 3 of the putative candidate miRNAs and identified a further 82 conserved miRNAs in CGMMV-infected cucumbers. Gene ontology (GO analysis revealed that the predicted target genes of these 88 miRNAs, which were screened using the psRNATarget and miRanda algorithms, were involved in three functional categories: 2265 in molecular function, 1362 as cellular components and 276 in biological process. The subsequent Kyoto Encyclopedia of Genes and Genomes (KEGG pathway analysis revealed that the predicted target genes were frequently involved in metabolic processes (166 pathways and genetic information processes (40 pathways and to a lesser degree the biosynthesis of secondary metabolites (12 pathways. These results could provide useful clues to help elucidate host-pathogen interactions in CGMMV and cucumber, as well as for the screening of resistance genes.

  8. 香石竹斑驳病毒的鉴定和RT-PCR检测%Identification and detection of carnation mottle virus on carnation by RT-PCR

    Institute of Scientific and Technical Information of China (English)

    孔宝华; 蔡红; 刘进元; 陈海如; 常胜军; 李文君; 段永嘉

    2002-01-01

    从表现为叶斑驳、花碎色症状的香石竹病株上获得一病毒分离物,电镜负染观察到直径为28~33 nm的球状粒子.病毒提取液经紫外光测定呈典型核蛋白吸收曲线,OD260/ OD280=1.70;血清学反应与CarMV抗血清出现明显的沉淀线.通过以上实验结果,确定该病毒分离物为香石竹斑驳病毒(carnation mottle virus, CarMV).根据该病毒的RNA序列设计引物,对病健材料进行了RT-PCR检测,结果从感病材料中扩增出大约600 bp的特异片段,而健康植物无此扩增带.将PCR产物连接pGEM-T-easy载体,转化大肠杆菌JM109,得到了含目的片段的重组子,经双脱氧序列分析,与Guilley报道的序列对应部分的核苷酸序列基本一致(其同源性达96%),最低检出病毒核酸含量为5 ng,表明应用RT-PCR检测香石竹斑驳病毒是可行的.

  9. Proteomic analysis of pathogenesis-related proteins (PRs) induced by compatible and incompatible interactions of pepper mild mottle virus (PMMoV) in Capsicum chinense L3 plants.

    Science.gov (United States)

    Elvira, Maria Isabel; Galdeano, Myriam Molina; Gilardi, Patricia; García-Luque, Isabel; Serra, Maria Teresa

    2008-01-01

    Resistance conferred by the L(3) gene is active against most of the tobamoviruses, including the Spanish strain (PMMoV-S), a P(1,2) pathotype, but not against certain strains of pepper mild mottle virus (PMMoV), termed P(1,2,3) pathotype, such as the Italian strain (PMMoV-I). Both viruses are nearly identical at their nucleotide sequence level (98%) and were used to challenge Capsicum chinense PI159236 plants harbouring the L(3) gene in order to carry out a comparative proteomic analysis of PR proteins induced in this host in response to infection by either PMMoV-S or PMMoV-I. PMMoV-S induces a hypersensitive reaction (HR) in C. chinense PI159236 plant leaves with the formation of necrotic local lesions and restriction of the virus at the primary infection sites. In this paper, C. chinense PR protein isoforms belonging to the PR-1, beta-1,3-glucanases (PR-2), chitinases (PR-3), osmotin-like protein (PR-5), peroxidases (PR-9), germin-like protein (PR-16), and PRp27 (PR-17) have been identified. Three of these PR protein isoforms were specifically induced during PMMoV-S-activation of C. chinense L(3) gene-mediated resistance: an acidic beta-1,3-glucanase isoform (PR-2) (M(r) 44.6; pI 5.1), an osmotin-like protein (PR-5) (M(r) 26.8; pI 7.5), and a basic PR-1 protein isoform (M(r) 18; pI 9.4-10.0). In addition, evidence is presented for a differential accumulation of C. chinense PR proteins and mRNAs in the compatible (PMMoV-I)-C. chinense and incompatible (PMMoV-S)-C. chinense interactions for proteins belonging to all PR proteins detected. Except for an acidic chitinase (PR-3) (M(r) 30.2; pI 5.0), an earlier and higher accumulation of PR proteins and mRNAs was detected in plants associated with HR induction. Furthermore, the accumulation rates of PR proteins and mRNA did not correlate with maximal accumulation levels of viral RNA, thus indicating that PR protein expression may reflect the physiological status of the plant.

  10. Genome sequence analysis of five Canadian isolates of strawberry mottle virus reveals extensive intra-species diversity and a longer RNA2 with increased coding capacity compared to a previously characterized European isolate.

    Science.gov (United States)

    Bhagwat, Basdeo; Dickison, Virginia; Ding, Xinlun; Walker, Melanie; Bernardy, Michael; Bouthillier, Michel; Creelman, Alexa; DeYoung, Robyn; Li, Yinzi; Nie, Xianzhou; Wang, Aiming; Xiang, Yu; Sanfaçon, Hélène

    2016-06-01

    In this study, we report the genome sequence of five isolates of strawberry mottle virus (family Secoviridae, order Picornavirales) from strawberry field samples with decline symptoms collected in Eastern Canada. The Canadian isolates differed from the previously characterized European isolate 1134 in that they had a longer RNA2, resulting in a 239-amino-acid extension of the C-terminal region of the polyprotein. Sequence analysis suggests that reassortment and recombination occurred among the isolates. Phylogenetic analysis revealed that the Canadian isolates are diverse, grouping in two separate branches along with isolates from Europe and the Americas.

  11. Kajian Morfologi Anatomi dan Agronomi antara Kedelai Sehat dengan Kedelai Terserang Cowpea Mild Mottle Virus serta Pemanfaatannya sebagai Bahan Ajar Sekolah Menengah Kejuruan

    Directory of Open Access Journals (Sweden)

    As’ad Syamsul Arifin

    2014-06-01

    Full Text Available Salah satu penyebab rendahnya produktivitas kedelai di Indonesia adalah serangan virus belang samar kacang tunggak Cowpea mild mottle virus (CPMMV. Penelitian ini adalah penelitian survei yang bertujuan untuk menggambarkan dan mengumpulkan informasi tentang kajian morfologi, anatomi dan agronomi terhadap infeksi CPMMV antara varietas yang terinfeksi dengan yang tidak terinfeksi. Data dianalisi secara deskriptif dan secara Inferensial ANAVA dengan menggunakan pro-gram SPSS for Windows versi 16. Hasil penelitian menunjukkan: Varietas Gumitir sehat, Anjosmoro sehat, Mahameru sehat , MLGG 0021, dan MLGG 0268 memiliki ukuran lebih besar dalam hal panjang daun, lebar daun, panjang petiol daun, nisbah daun (L/W, dan nisbah daun (L/PL dibandingkan va-rietas yang sakit. Varietas Argopuro sakit memiliki ukuran lebih besar dalam hal panjang daun, lebar daun, panjang petiol daun, dan nisbah daun (L/W, Nisbah daun (L/PL dibandingkan varietas yang sehat. Tidak terdapat perbedaan warna hipokotil, perbedaan bentuk daun, warna daun, warna bulu batang, permukaan daun antara kedelai sehat dan sakit pada keenam varietas. Terdapat perbedaan warna biji, warna polong masak, antara kedelai sehat dan sakit pada keenam varietas. Warna bunga pada kelima varietas kedelai sehat dan sakit berwarna ungu, kecuali pada varietas Gumitir berwarna putih. Terdapat perbedaan bentuk daun pada varietas Argopuro, Anjosmoro, Mahameru sehat dan sakit. Tidak terdapat perbedaan bentuk daun antara sehat dan sakit pada varietas Gumitir, MLGG 0021 dan MLGG 0268. Ada pengaruh varietas, kondisi, interaksi varietas dan kondisi terhadap ukuran sel daun. Ada pengaruh varietas terhadap jumlah stomata, kondisi serta interaksi varietas dan kondisi tidak berpengaruh secara nyata terhadap jumlah stomata. Tidak terdapat pengaruh varietas, interaksi varietas dan kondisi terhadap jumlah epidermis. Ada pengaruh kondisi terhadap jumlah epidermis. Jumlah trikoma varietas kedelai sehat lebih banyak daripada

  12. 甘薯羽状斑驳病毒外壳蛋白基因的分子变异%Molecular variation of Sweet potato feathery mottle virus coat protein gene

    Institute of Scientific and Technical Information of China (English)

    王晓华; 张振臣; 乔奇; 秦艳红; 张德胜; 田雨婷

    2012-01-01

    应用单链构象多态性(single-strand conformation polymorphism,SSCP)技术结合核苷酸序列测定的方法,对我国甘薯主产区11个省份的甘薯羽状斑驳病毒(Sweet potato feathery mottle virus,SPFMV)外壳蛋白(CP)基因的分子变异情况进行了研究.结果表明,SPFMV CP基因的RT-PCR产物表现了较丰富的图谱类型,50个分离物共产生9种主要的SSCP带型;对显示不同带型的20个样品的CP基因进行了序列测定和进化树分析,CP基因核苷酸序列一致性为77.2%~99.9%.说明这些样品的SPFMV的CP基因存在较大的分子变异,可划分为EA、RC、O和C4个株系.%Virus samples were collected from 11 provinces in China, and the molecular variation of Sweet potato feathery mottle virus (SPFMV) coat protein (CP) gene were analyzed using single-strand conformation polymorphism (SSCP) and sequence analysis. SSCP analysis of 50 isolates showed that these isolates produced 9 kinds of SSCP band forms. The results of sequence comparison and phylogenetic analysis showed that the identities of the nucleotide sequences of CP genes among these isolates were 77. 2% - 99. 9%. SPFMV CP genes of different isolates in China had great molecular variability and could be divided into four diverged groups at least, including the East Africa (EA), Russet Crack (RC), Ordinary (O) and Common , strain groups.

  13. 黄瓜绿斑驳花叶病毒传播方式的研究进展%Research Progress on Transmission Modes of Cucumber green mottle mosaic virus

    Institute of Scientific and Technical Information of China (English)

    李俊香; 古勤生

    2015-01-01

    黄瓜绿斑驳花叶病毒(Cucumber green mottle mosaic virus,CGMMV)是葫芦科作物重要病毒,通过多种方式如种子、土壤、水、介体和机械接触传播,病害蔓延扩散迅速。该病害在许多国家和地区频繁报道,我国也曾大面积受到为害,尤其是西瓜嫁接地区,产业损失严重。带毒种子为初侵染源,发生过该病害的地块土壤也是重要的侵染源,发病植株可通过灌溉水以及机械接触传播病毒。为了更好地控制该病害的发生与流行,本文介绍了该病毒传播方式方面的研究进展。%Cucumber green mottle mosaic virus(CGMMV;genus Tobamovirus)is an important virus of cucurbit crops. It spread through a number of ways,such as seed,soil,water,vector and mechanical contact and spread quickly. This disease was frequently reported in many countries and regions. China was once harmed by this disease on large areas,especially regions where watermelon was grafted. This disease caused severe damage in grafting watermelon production. Seed with CGMMV was the primary source of infection. And the soil contaminated with infected plants debris was also recognized as the major primary source. The infected plants can transmit virus via irrigation water and mechanical contact. In order to better control the occurance and spread of this disease,this paper introduced the research progress in the transmission modes of CGMMV.

  14. <em>Emaravirus>: A Novel Genus of Multipartite, Negative Strand RNA Plant Viruses

    Directory of Open Access Journals (Sweden)

    Hans-Peter Mühlbach

    2012-09-01

    Full Text Available Ringspot symptoms in European mountain ash (<em>Sorbus aucupariaem> L., fig mosaic, rose rosette, raspberry leaf blotch, pigeonpea sterility mosaic (<em>Cajanus cajanem> and High Plains disease of maize and wheat were found to be associated with viruses that share several characteristics. They all have single-stranded multipartite RNA genomes of negative orientation. In some cases, double membrane-bound virus-like particles of 80 to 200 nm in diameter were found in infected tissue. Furthermore, at least five of these viruses were shown to be vectored by eriophyid mites. Sequences of <em>European mountain ash ringspot-associated virus> (EMARaV, <em>Fig mosaic virus> (FMV, rose rosette virus (RRV, raspberry leaf blotch virus (RLBV, pigeonpea sterility mosaic virus and High Plains virus strongly support their potential phylogenetic relationship. Therefore, after characterization of EMARaV, the novel genus <em>Emaravirus> was established, and FMV was the second virus species assigned to this genus. The recently sequenced RRV and RLBV are supposed to be additional members of this new group of plant RNA viruses.

  15. Classification of cryo electron microscopy images, noisy tomographic images recorded with unknown projection directions, by simultaneously estimating reconstructions and application to an assembly mutant of Cowpea Chlorotic Mottle Virus and portals of the bacteriophage P22

    Science.gov (United States)

    Lee, Junghoon; Zheng, Yili; Yin, Zhye; Doerschuk, Peter C.; Johnson, John E.

    2010-08-01

    Cryo electron microscopy is frequently used on biological specimens that show a mixture of different types of object. Because the electron beam rapidly destroys the specimen, the beam current is minimized which leads to noisy images (SNR substantially less than 1) and only one projection image per object (with an unknown projection direction) is collected. For situations where the objects can reasonably be described as coming from a finite set of classes, an approach based on joint maximum likelihood estimation of the reconstruction of each class and then use of the reconstructions to label the class of each image is described and demonstrated on two challenging problems: an assembly mutant of Cowpea Chlorotic Mottle Virus and portals of the bacteriophage P22.

  16. 玉米褪绿斑驳病毒实时荧光RT-PCR检测方法研究%Detection of Maize chlorotic mottle virus by real-time fluorescent RT-PCR

    Institute of Scientific and Technical Information of China (English)

    闻伟刚; 张建成; 崔俊霞; 张颖

    2011-01-01

    Maize chlorotic mottle virus ( MCMV) is a quarantine pests issued by Chinese government. In this study, accord to the conservative sequences of the coat protein genes of different MCMV isolates, a real - time fluorescent RT - PCR method was established based on specific primers and TaqMan probe. Specific studies have shown that for the two MCMV strains from different sources, a typical amplification curve can be obtained, and not for the Wheat streak mosaic virus, Maize rough dwarf virus and Maize dwarf mosaic virus. Sensitivity comparison found that the detection limit can reach 10 ~5 dilution, which is 100 times higher than the regular RT - PCR method. Thus, the real - time fluorescent RT - PCR is a rapid, sensitive and highly specific method for the detection of MCMV.%玉米褪绿斑驳病毒(Maize chlorotic mottle virus,MCMV)是我国对外公布的检疫性有害生物.本研究根据该病毒外壳蛋白基因的保守序列,设计得到特异性引物及Taqman荧光探针,建立了MCMV的实时荧光RT-PCR方法,并对其灵敏度与特异性进行了研究.该方法针对2个不同来源的毒株均能得到典型扩增曲线,而没有从小麦线条花叶病毒、玉米粗缩病毒和玉米矮花叶病毒的RNA得到扩增曲线,表明引物与荧光探针具有良好的特异性.针对玉米褪绿斑驳病毒RNA不同稀释度样品,实时荧光RT-PCR检测低限达到10-5稀释度,检测灵敏度要比普通RT-PCR高出100倍.因此,本研究建立的MCMV实时荧光方法具有特异性强、灵敏度高和快速有效的优点.

  17. Molecular genetic analysis of virus isolates from wild and cultivated plants demonstrates that East Africa is a hotspot for the evolution and diversification of sweet potato feathery mottle virus.

    Science.gov (United States)

    Tugume, Arthur K; Cuéllar, Wilmer J; Mukasa, Settumba B; Valkonen, Jari P T

    2010-08-01

    Sweet potato feathery mottle virus (SPFMV, genus Potyvirus) is globally the most common pathogen of cultivated sweet potatoes (Ipomoea batatas; Convolvulaceae). Although more than 150 SPFMV isolates have been sequence-characterized from cultivated sweet potatos across the world, little is known about SPFMV isolates from wild hosts and the evolutionary forces shaping SPFMV population structures. In this study, 46 SPFMV isolates from 14 wild species of genera Ipomoea, Hewittia and Lepistemon (barcoded for the matK gene in this study) and 13 isolates from cultivated sweet potatoes were partially sequenced. Wild plants were infected with the EA, C or O strain, or co-infected with the EA and C strains of SPFMV. In East Africa, SPFMV populations in wild species and sweet potato were genetically undifferentiated, suggesting inter-host transmission of SPFMV. Globally, spatial diversification of the 178 isolates analysed was observed, strain EA being largely geographically restricted to East Africa. Recombination was frequently detected in the 6K2-VPg-NIaPro region of the EA strain, demonstrating a recombination 'hotspot'. Recombination between strains EA and C was rare, despite their frequent co-infections in wild plants, suggesting purifying selection against strain EA/C recombinants. Positive selection was predicted on 17 amino acids distributed over the entire coat protein in the globally distributed strain C, as compared to only four amino acids in the coat protein N-terminus of the EA strain. This selection implies a more recent introduction of the C strain and a higher adaptation of the EA strain to the local ecosystem. Thus, East Africa appears as a hotspot for evolution and diversification of SPFMV.

  18. Single amino acid substitution in the methyltransferase domain of Paprika mild mottle virus replicase proteins confers the ability to overcome the high temperature-dependent Hk gene-mediated resistance in Capsicum plants.

    Science.gov (United States)

    Matsumoto, Katsutoshi; Johnishi, Kousuke; Hamada, Hiroyuki; Sawada, Hiromasa; Takeuchi, Shigeharu; Kobayashi, Kappei; Suzuki, Kazumi; Kiba, Akinori; Hikichi, Yasufumi

    2009-03-01

    Capsicum plants harboring the Hk gene (Hk) show resistance to Paprika mild mottle virus (PaMMV) at 32 degrees C but not 24 degrees C. To identify the viral elicitor that activates the Hk-mediated resistance, several chimeric viral genomes were constructed between PaMMV and Tobacco mosaic virus-L. Infection patterns of these chimeric viruses in Hk-harboring plants revealed responsibility of PaMMV replicase genes for activation of the Hk-mediated resistance. The comparison of nucleotide sequence of replicase genes between PaMMV and PaHk1, an Hk-resistance-breaking strain of PaMMV, revealed that the adenine-to-uracil substitution at the nucleotide position 721 causes an amino acid change from threonine to serine at the 241st residue in the methyltransferase domain. Introduction of the A721U mutation into the replicase genes of parental PaMMV overcame the Hk resistance at 32 degrees C. The results indicate that Hk-mediated resistance is induced by PaMMV replicase proteins and that methyltransferase domain has a role in this elicitation.

  19. Development and comparison of three PCR methods for detecting Maize chlorotic mottle virus%玉米褪绿斑驳病毒3种PCR检测方法的建立与比较

    Institute of Scientific and Technical Information of China (English)

    张露茜; 刘战民; 夏雪影; 胡培龙; 于翠; 杨翠云

    2016-01-01

    RT-PCR,TaqMan real-time RT-PCR and SYBR Green Ⅰ real-time RT-PCR approaches were developed for detection of Maize chlorotic mottle virus(MCMV),and their sensitivity in detection of MCMV was compared.Results showed that the sensitivities of TaqMan real-time RT-PCR and SYBR Green Ⅰ real-time RT-PCR methods were ten to one hundred times higher than that of conventional RT-PCR,in particular the TaqMan real-rime RT-PCR,which displays the highest sensitivity with a detectable limit of 1.61 fg.%以带有玉米褪绿斑驳病毒(MCMV)的玉米叶片为材料,研究建立了MCMV的普通RT-PCR、TaqMan实时荧光RT-PCR和SYBR GreenⅠ实时荧光RT-PCR检测方法,并比较了3种方法的灵敏度.结果表明:TaqMan实时荧光RT-PCR的检测灵敏度最高,最低检出量可达1.61 fg,SYBR Green Ⅰ实时荧光RT-PCR略逊之,普通RT-PCR的检测灵敏度则相对较低,与前两者相差10~100倍.

  20. 香石竹斑驳病毒(CarMV)主要基因的分子变异分析%Molecular variation analysis of main genes of Carnation mottle virus (CarMV)

    Institute of Scientific and Technical Information of China (English)

    佟爱仔; 孔宝华; 陈海如; 王连春; 胡中会; 李晓鹏; 蔡红

    2012-01-01

    Carnation mottle virus (CarMV) is one of the important viruses infecting Carnation. In this study, three genes of p7, p9 and CP of CarMV were isolated from twelve different cultivars of Carnation by RT-PCR and their sequences of nucleotides and amino acids were analyzed. The results showed that the p7, p9 and CP genes had higher stability by sequence alignment. The identities of the nucleotide and the amino acid sequence of p7 gene were 98.10% and 97.81 % respectively. There were evident variations at the 11th and 14thof amino acid position of p7 gene. While the identities of the nucleotide and amino acid sequence of p9 gene were 98.80% and 99.13% respectively. There was clear variations at the 4 th amino acid position of p9 gene. How-ever, the identities of the nucleotide and amino acid sequence of CP gene were 97.58% and 98.43% respec-tively. There was correlative between the 164 th and 331th amino acid. Those variations of positions of CP were dispersive. The results also showed that the mutations of p7 and p9 were main located at N-terminal parts which exposed to interact with host. Those variations of positions of CarMV might relate to vial variation and interaction between the virus and host.%香石竹斑驳病毒(Carnation mottle virus,CarMV)是侵染香石竹的主要病毒之一.本试验从12个香石竹品种中获得CarMV分离物,通过RT-PCR扩增包含p7、p9、CP3个主要基因的片段,并对扩增产物进行克隆测序.通过序列比对发现CarMV的p7、p9、CP 3个基因有较高的稳定性,p7基因核苷酸序列相似性为98.10%,氨基酸序列相似性为97.81%,其中氨基酸的第11和14位存在显著差异;p9基因核苷酸序列的相似性为98.80%,氨基酸序列相似性为99.13%,氨基酸序列在第4位差异明显;CP基因核酸序列相似性为97.58%,氨基酸的相似性为98.43%,氨基酸序列的第164和331位的变异存在相关性,整个CP变异位点比较分散.证实p7和p9的变异位点

  1. 香石竹斑驳病毒外壳蛋白基因的原核表达及抗血清制备%Prokaryotic Expression and Antiserum Preparation of the Coat Protein Gene of Carnation mottle virus

    Institute of Scientific and Technical Information of China (English)

    李晓鹏; 王连春; 彭杰军; 姬盼; 李准; 孔宝华; 陈海如

    2013-01-01

    香石竹斑驳病毒(Carnation mottle virus,CarMV)是侵染香石竹的主要病毒.本研究从已鉴定的CarMV毒源植物中提取总RNA,克隆外壳蛋白(cp)基因后构建pET30a-CP重组质粒,并转入BL21 (DE3) pLysS进行原核表达.通过对诱导温度、初菌浓度、IPTG的浓度等表达条件进行优化,目的蛋白在37℃,IPTG终浓度为1.0 mmol/L的条件下,诱导表达6h后获得最高表达量.采用割胶的方法纯化cp蛋白,纯化后的目的蛋白免疫小鼠获得了特异性抗血清.经Western-blot检测,结果表明所制备的抗血清与诱导表达的重组蛋白及接种CarMV的香石竹样品均发生特异性结合.利用所制备抗血清对昆明地区的48个香石竹样品进行抽检,结果表明香石竹样品的带毒率为79.2%.本研究为大规模抗血清生产、检测应用和深入研究该病毒cp基因与寄主的互作奠定基础.%Carnation mottle virus (CarMV) is one of the important viruses infecting carnation. In this study, RNA was extracted from CarMV infected carnation, and coat protein (cp) gene was cloned into pET30a ( + ) and transformed into BL21 (DE3) pLysS. The optimal conditionsor the highest expres-sion of coat protein was expressing at 37℃ for 6 h and inducing with 1. 0 mmol/L IPTG. The expressed protein was purified with gradient SDS-PAGE and the antiserum against the protein was raised in Kun-ming mice. The result of Western-blot analysis confirmed that the antiserum reacted strongly and spe-cifically recombinant CarMV cp and CarMV infected samples. Forty-eight carnation samples in Kun-ming were tested with the antibody made in this experiment, of which 79. 2% of the samples were in-fected by CarMV. This study provides a good basis for massive CarMV cp antiserum preparation CarMV detection and interaction studies between CarMV and host plants.

  2. First report of Cowpea mild mottle Carlavirus on yardlong bean (Vigna unguiculata subsp. sesquipedalis) in Venezuela.

    Science.gov (United States)

    Brito, Miriam; Fernández-Rodríguez, Thaly; Garrido, Mario José; Mejías, Alexander; Romano, Mirtha; Marys, Edgloris

    2012-12-14

    Yardlong bean (Vigna unguiculata subsp. sesquipedalis) plants with virus-like systemic mottling and leaf distortion were observed in both experimental and commercial fields in Aragua State, Venezuela. Symptomatic leaves were shown to contain carlavirus-like particles. RT-PCR analysis with carlavirus-specific primers was positive in all tested samples. Nucleotide sequences of the obtained amplicons showed 84%-74% similarity to corresponding sequences of Cowpea mild mottle virus (CPMMV) isolates deposited in the GenBank database. This is the first report of CPMMV in Venezuela and is thought to be the first report of CPMMV infecting yardlong bean.

  3. First Report of Cowpea Mild Mottle Carlavirus on Yardlong Bean (Vigna unguiculata subsp. sesquipedalis in Venezuela

    Directory of Open Access Journals (Sweden)

    Edgloris Marys

    2012-12-01

    Full Text Available Yardlong bean (Vigna unguiculata subsp. sesquipedalis plants with virus-like systemic mottling and leaf distortion were observed in both experimental and commercial fields in Aragua State, Venezuela. Symptomatic leaves were shown to contain carlavirus-like particles. RT-PCR analysis with carlavirus-specific primers was positive in all tested samples. Nucleotide sequences of the obtained amplicons showed 84%–74% similarity to corresponding sequences of Cowpea mild mottle virus (CPMMV isolates deposited in the GenBank database. This is the first report of CPMMV in Venezuela and is thought to be the first report of CPMMV infecting yardlong bean.

  4. Cocksfoot mottle sobemovirus establishes infection through the phloem.

    Science.gov (United States)

    Otsus, Maarja; Uffert, Gabriela; Sõmera, Merike; Paves, Heiti; Olspert, Allan; Islamov, Bulat; Truve, Erkki

    2012-06-01

    Cocksfoot mottle virus (CfMV) localization in oat plants was analyzed during three weeks post infection by immunohistochemical staining to follow its spread through different tissues. In early stages of infection, the virus was first detectable in phloem parenchyma and bundle sheath cells of inoculated leaves. Bundle sheath and phloem parenchyma were also the cell types where the virus was first detected in stems and systemic leaves of infected plants. In later stages of infection, CfMV spread also into the mesophyll surrounding vascular bundles and was seldom detected in xylem parenchyma of inoculated leaves. In systemic leaves, CfMV was not detected from xylem. Moreover, sometimes it was found from phloem only. In straw and roots, CfMV was detected both from phloem and xylem. According to our observations, CfMV predominantly moves through phloem, which makes the systemic movement of CfMV different from that of another monocot-infecting sobemovirus, Rice yellow mottle virus (RYMV). Copyright © 2012 Elsevier B.V. All rights reserved.

  5. Habitat Suitability Index Models: Mottled duck

    Science.gov (United States)

    Rorabaugh, James C.; Zwank, Phillip J.

    1983-01-01

    The mottled duck is a mallard-like resident species of the Gulf of Mexico coast, from the marshes of Pearl River on the Lou i si ana-Ht ss t ss ipp i border to the Al varado Lagoon near Veracruz, Mexico (Bell rose 1976). The highest densities of nesting mottl ed ducks are found in brackish to fresh coastal marshes (H. Bateman, Louisiana Department of Wildl ife and Fisheries, Baton Rouge; pers , comm.). Mottled ducks also inhabit prairie land near prairie potholes in Texas and flooded rice fields in Texas (Engel ing 1950) and Louisiana (Linscombe 1972).

  6. 香石竹斑驳病毒云南分离物全基因组序列测定和侵染性克隆构建%Sequence and construction of infectious cDNA clones of Carnation mottle virus isolate in Yunnan

    Institute of Scientific and Technical Information of China (English)

    王连春; 彭杰军; 郭维霞; 李晓鹏; 孔宝华; 陈海如

    2012-01-01

    香石竹斑驳病毒(Carnation mottle virus,CarMV)是危害香石竹的一种重要病毒,本研究通过构建农杆菌介导的CarMV侵染性克隆来进一步研究该病毒基因功能.首先获得CarMV云南分离物全长序列,与报道的上海分离物相似性达到94.78%;将CarMV全长cDNA基因序列构建到具有35S启动子的双元表达载体pCV-nGFP,通过农杆菌浸润到本氏烟中瞬时表达,本氏烟系统叶片RT-PCR能检测到CarMV.试验结果表明,本研究构建Car-MV侵染性克隆通过农杆菌介导可快速高效侵染植物,可以用于病毒基因功能研究;同时CarMV云南分离物全长序列测定结果表明其属于p164 K331组群.%Carnation mottle virus was a serious constraint to carnation. The objective of this study is to generate the Agrobacterium tumefacien-mediated infectious cDNA clones of Carnation mottle virus to study the gene function of the virus. Firstly, we got full cDNA sequences of CarMV from Yunnan Province, the nucleic acid similarity of which with Shanghai isolate was 94. 78%. The full-length cDNAs of CarMV were inserted into pCV-nGFP with a 35S promoter. They were then introduced into A. tumefacien, and infiltrated into Nicotiana benthami-ana . RT-PCR detection of systemic leaves of N. benthamiana showed that they were infected with CarMV. The result suggested that the Agrobacterium -mediated infection of N. benthamiana by the infectious cDNA clones of CarMV was successful and efficient, and it could be used to study the gene of virus. The full-length sequences of CarMV which isolated from Yunnan belonged to the group P164 K331.

  7. Molecular Identification of Chronic Bee Paralysis Virus Infection in <em>Apis melliferaem> Colonies in Japan

    Directory of Open Access Journals (Sweden)

    Tomomi Morimoto

    2012-06-01

    Full Text Available Chronic bee paralysis virus (CBPV infection causes chronic paralysis and loss of workers in honey bee colonies around the world. Although CBPV shows a worldwide distribution, it had not been molecularly detected in Japan. Our investigation of <em>Apis melliferaem> and <em>Apis cerana japonicaem> colonies with RT-PCR has revealed CBPV infection in <em>A. melliferaem> but not <em>A. c. japonicaem> colonies in Japan. The prevalence of CBPV is low compared with that of other viruses: deformed wing virus (DWV, black queen cell virus (BQCV, Israel acute paralysis virus (IAPV, and sac brood virus (SBV, previously reported in Japan. Because of its low prevalence (5.6% in <em>A. melliferaem> colonies, the incidence of colony losses by CBPV infection must be sporadic in Japan. The presence of the (− strand RNA in dying workers suggests that CBPV infection and replication may contribute to their symptoms. Phylogenetic analysis demonstrates a geographic separation of Japanese isolates from European, Uruguayan, and mainland US isolates. The lack of major exchange of honey bees between Europe/mainland US and Japan for the recent 26 years (1985–2010 may have resulted in the geographic separation of Japanese CBPV isolates.

  8. High Latitude Mottling on Jupiter

    Science.gov (United States)

    2000-01-01

    The familiar banded appearance of Jupiter at low and middle latitudes gradually gives way to a more mottled appearance at high latitudes in this striking true color image taken Dec. 13, 2000, by NASA's Cassini spacecraft.The intricate structures seen in the polar region are clouds of different chemical composition, height and thickness. Clouds are organized by winds, and the mottled appearance in the polar regions suggests more vortex-type motion and winds of less vigor at higher latitudes.The cause of this difference is not understood. One possible contributor is that the horizontal component of the Coriolis force, which arises from the planet's rotation and is responsible for curving the trajectories of ocean currents and winds on Earth, has its greatest effect at high latitudes and vanishes at the equator. This tends to create small, intense vortices at high latitudes on Jupiter. Another possibility may lie in that fact that Jupiter overall emits nearly as much of its own heat as it absorbs from the Sun, and this internal heat flux is very likely greater at the poles. This condition could lead to enhanced convection at the poles and more vortex-type structures. Further analysis of Cassini images, including analysis of sequences taken over a span of time, should help us understand the cause of equator-to-pole differences in cloud organization and evolution.By the time this picture was taken, Cassini had reached close enough to Jupiter to allow the spacecraft to return images with more detail than what's possible with the planetary camera on NASA's Earth-orbiting Hubble Space Telescope. The resolution here is 114 kilometers (71 miles) per pixel. This contrast-enhanced, edge-sharpened frame was composited from images take at different wavelengths with Cassini's narrow-angle camera, from a distance of 19 million kilometers (11.8 million miles). The spacecraft was in almost a direct line between the Sun and Jupiter, so the solar illumination on Jupiter is almost full

  9. Detection of Strawberry mottle virus and Strawberry mild yellow edge virus with multiplex RT-PCR based on internal control%利用内标为基础的多重 RT-PCR 技术检测草莓斑驳病毒和草莓轻型黄边病毒

    Institute of Scientific and Technical Information of China (English)

    王红; 王菁菁; 张科立; 成卓敏

    2014-01-01

    草莓斑驳病毒(SMoV)和草莓轻型黄边病毒(SMYEV)分布较广,危害较重。应用CTAB法提取草莓总RNA,以优质的草莓总RNA为模板,结合扩增内标的检测体系,建立了SMoV和SMYEV的多重RT-PCR检测体系,可以对草莓田间植株和试管苗进行快速稳定的病毒检测。%Strawberry mottle virus(SMoV) and Strawberry mild yellow edge virus(SMYEV), which are found world-wide, can cause serious crop losses .Total RNA for reverse transcriptase-polymerase chain reaction ( RT-PCR) was extracted from strawberry with CTAB method .A multiplex RT-PCR assay was used for simultaneous detecting SMoV and SMYEV based on ndh B gene as the internal control .Both field plants and test-tube plantlets of strawberries were detected effectively .

  10. 山东地区樱桃绿环斑驳病毒(CGRMV)的RT-PCR 检测及外壳蛋白基因的克隆%DETECTION OF CHERRY GREEN RING MOTTLE VIRUS (CGRMV) AND ISOLATION OF ITS COAT PROTEIN GENES FROM SWEET CHERRY IN SHANDONG PROVINCE

    Institute of Scientific and Technical Information of China (English)

    王文文; 宗晓娟; 陈立伟; 王甲威; 魏海蓉; 徐丽; 孟艳玲; 严雪瑞; 刘庆忠

    2012-01-01

    为调查我省甜樱桃感染樱桃绿环斑驳病毒(Cherry Green Ring Mottle Virus,CCRMV)情况,本研究以甜樱桃(Prunus avium L.)品种“红灯”叶片总RNA为模板,根据CGRMV基因组序列设计特异引物,对山东地区37份甜樱桃“红灯”样品进行RT - PCR检测,共检测出19份阳性样品.利用CGRMV外壳蛋白基因序列引物,从阳性植物样本中分离到约800bp的目的片段,克隆测序,序列分析显示该片段全长807 bp,编码268个氨基酸,与G enBank中已登录的CGRMV分离物的外壳蛋白基因序列一致性为87% ~97%,氨基酸序列相似性为95%~99%.该结果表明山东地区甜樱桃生产园中感染CGRMV的病例较为普遍.%In order to investigate the infection of Cherry Green Ring Mottle Virus (CGRMV) from sweet cherry ( Prunus avium L. ) in Shandong province, total RNA was extracted from the leaves of the sweet cherry cultivar Red Lamp' The specific primers were designed corresponding to the CGRMV genome sequence and used for the RT - PCR detection. Thirty - seven sweet cherry samples from six orchards were analyzed in the experiment and nineteen of them were detected as positive. The gene that encodes the virus coat protein was amplified and se-quenced. Sequence analysis revealed that the fragment was 807 nucleotides in length, encoding 268 amino acids. It shared 87% ~97% identity to the other CGRMV isolates reported in GenBank in the nucleotide level and 95% ~99% similarity in the amino acids level. These results showed CGRMV had been wide spread on sweet cherry in Shandong district.

  11. 西瓜感染黄瓜绿斑驳花叶病毒后糖的变化与倒瓤关系的研究%The relation between sugar change and blood-flesh of watermelon infected with Cucumber green mottle mosaic virus

    Institute of Scientific and Technical Information of China (English)

    李立梅; 吴元华; 赵秀香; 王文航; 王林; 蔡明

    2011-01-01

    By high performance liquid chromatography ( HPLC), the contents of glucose, fructose and sucrose, and the sweetness were analyzed in watermelon inoculated with Cucumber green mottle mosaic virus (CGMMV). The relationship between sugar change and blood-flesh of watermelon was determined. The results indicated that the content of glucose was apparently increased compared to that of the control before maturity (within 28 days after pollination), but reduced to 24.8% of the control after maturity (at 35 days after pollination). The content of fructose was higher than that of the control within 14 days after pollination, and then decreased with a significant difference. In all cases, the content of sucrose increased with the growth of watermelon. However, compared with the control, the sucrose content of watermelon inoculated with CGMMV was lower. The ratios of glucose, fructose and sucrose in the total sugar were abnormal. Coincidence with the changes of the total sugar, the fruit sweetness before maturity was higher than that of the control, whereas decreased sharply after maturity ( lower than that of the control). The inner pulp of the mature fruit appeared to be water-soaked and dirty red with no edibility. In a word, after inoculation with CGMMV, the changes of sugars and sweetness affected the watermelon quality.%@@ 黄瓜绿斑驳花叶病毒(Cucumber green mottle mosaic virus,CGMMV)是葫芦科作物上的重要病毒,2006年12月被农业部列为全国检疫性有害生物,2007年5月又被列为中华人民共和国进境植物检疫性有害生物.西瓜感染该病毒后,果肉出现油渍状深色病变,种子周围形成暗紫红色空洞,变色组织软化溶解呈丝状纤维化,俗称血瓤或倒瓤,果味异样,丧失食用价值[1].

  12. Refined structure of desmodium yellow mottle tymovirus at 2.7 A resolution.

    Science.gov (United States)

    Larson, S B; Day, J; Canady, M A; Greenwood, A; McPherson, A

    2000-08-18

    Desmodium yellow mottle virus is a 28 nm diameter, T=3 icosahedral plant virus of the tymovirus group. Its structure has been solved to a resolution of 2.7 A using X-ray diffraction analysis based on molecular replacement and phase extension methods. The final R value was 0.151 (R(free)=0.159) for 134,454 independent reflections. The folding of the polypeptide backbone is nearly identical with that of turnip yellow mosaic virus, as is the arrangement of subunits in the virus capsid. However, a major difference in the disposition of the amino-terminal ends of the subunits was observed. In turnip yellow mosaic virus, those from the B and C subunits comprising the hexameric capsomeres formed an annulus about the interior of the capsomere, while the corresponding N termini of the pentameric capsomere A subunits were not visible at all in electron density maps. In Desmodium yellow mottle tymovirus, amino termini from the A and B subunits combine to form the annuli, thereby resulting in a much strengthened association between the two types of capsomeres and an, apparently, more stable capsid. The first 13 residues of the C subunit were invisible in electron density maps. Two ordered fragments of single-stranded RNA, seven and two nucleotides in length, were observed. The ordered water structure of the virus particle was delineated and required 95 solvent molecules per protein subunit.

  13. Structured heterogeneity in a marine terrace chronosequence: Upland mottling

    Science.gov (United States)

    Schulz, Marjorie S.; Stonestrom, David A.; Lawrence, Corey R.; Bullen, Thomas D.; Fitzpatrick, John; Kyker-Snowman, Emily; Manning, Jane; Mnich, Meagan

    2016-01-01

    Soil mottles generally are interpreted as a product of reducing conditions during periods of water saturation. The upland soils of the Santa Cruz, CA, marine terrace chronosequence display an evolving sequence of reticulate mottling from the youngest soil (65 ka) without mottles to the oldest soil (225 ka) with well-developed mottles. The mottles consist of an interconnected network of clay and C-enriched regions (gray, 2.5Y 6/1) bordered by leached parent material (white, 2.5Y 8/1) within a diminishing matrix of oxidized parent material (orange, 7.5YR 5/8). The mottles develop in soils that formed from relatively uniform nearshore sediments and occur below the depth of soil bioturbation. To explore how a presumably wetland feature occurs in an unsaturated upland soil, physical and chemical characteristics of mottle separates (orange, gray, and white) were compared through the deep time represented by the soil chronosequence. Mineralogical, isotopic, and surface-area differences among mottle separates indicate that rhizogenic centimeter-scale mass transfer acting across millennia is an integral part of weathering, pedogenesis, and C and nutrient transfer. Elemental analysis, electron microscopy, and Fe-isotope systematics indicate that mottle development is driven by deep roots together with their fungal and microbial symbionts. Taken together, these data suggest that deep soil horizons on old stable landforms can develop reticulate mottling as the long-term imprint of rhizospheric processes. The processes of rhizogenic mottle formation appear to regulate pedogenesis, nutrients, and C sequestration at depth in unsaturated zones.

  14. Selective depletion of organic matter in mottled podzol horizons

    NARCIS (Netherlands)

    Buurman, P.; Schellekens, J.; Fritze, H.; Nierop, K.G.J.

    2007-01-01

    Abstract: Some well-drained podzols on quartz sands in the Netherlands and neighbouring Belgium and Germany show mottling in all horizons due to selective removal of organic matter. Phospholipid analysis and morphology of the mottles suggests that this removal is due to activity of fungi. Investigat

  15. Cryo-EM reconstruction of the Cafeteria roenbergensis virus capsid suggests novel assembly pathway for giant viruses.

    Science.gov (United States)

    Xiao, Chuan; Fischer, Matthias G; Bolotaulo, Duer M; Ulloa-Rondeau, Nancy; Avila, Gustavo A; Suttle, Curtis A

    2017-07-14

    Whereas the protein composition and overall shape of several giant virus capsids have been described, the mechanism by which these large capsids assemble remains enigmatic. Here, we present a reconstruction of the capsid of Cafeteria roenbergensis virus (CroV), one of the largest viruses analyzed by cryo-electron microscopy (cryo-EM) to date. The CroV capsid has a diameter of 3,000 Å and a Triangulation number of 499. Unlike related mimiviruses, the CroV capsid is not decorated with glycosylated surface fibers, but features 30 Å-long surface protrusions that are formed by loops of the major capsid protein. Based on the orientation of capsomers in the cryo-EM reconstruction, we propose that the capsids of CroV and related giant viruses are assembled by a newly conceived assembly pathway that initiates at a five-fold vertex and continuously proceeds outwards in a spiraling fashion.

  16. Biological characteristics of tomato mild mottle potyvirus isolated ...

    African Journals Online (AJOL)

    Biological characteristics of tomato mild mottle potyvirus isolated from tomato and thorn ... (Datura stramonium) and tomato (Lycopersicon lycopersicum (L.) Karst. ... Solanum demissum L., while the PVY isolate infected Chenopodium quinoa ...

  17. Impact of Electrostatic Assist on Halftone Mottle in Shrink Films

    Directory of Open Access Journals (Sweden)

    Akshay V. Joshi

    2015-09-01

    Full Text Available Gravure printing delivers intricate print quality and exhibit better feasibility for printing long run packaging jobs. PVC and PETG are widely used shrink films printed by gravure process. The variation in ink transfer from gravure cells on to the substrate results in print mottle. The variation is inevitable and requires close monitoring with tight control on process parameters to deliver good dot fidelity. The electrostatic assist in gravure improves the ink transfer efficiency but is greatly influenced by ESA parameters such as air gap (distance between charge bar and impression roller and voltage. Moreover, it is imperative to study the combined effect of ESA and gravure process parameters such as line screen, viscosity and speed for the minimization of half-tone mottle in shrink films. A general full factorial design was performed for the above mentioned parameters to evaluate half-tone mottle. The significant levels of both the main and interactions were studied by ANOVA approach. The statistical analysis revealed the significance of all the process parameters with viscosity, line screen and voltage being the major contributors in minimization of half-tone mottle. The optimized setting showed reduction in halftone mottle by 33% and 32% for PVC and PET-G respectively. The developed regression model was tested that showed more than 95% predictability. Furthermore, the uniformity of dot was measured by image to non-image area (ratio distribution. The result showed reduction in halftone mottle with uniform dot distribution.

  18. Photoresponsive, reversible immobilization of virus particles on supramolecular platforms.

    Science.gov (United States)

    Weineisen, N L; Hommersom, C A; Voskuhl, J; Sankaran, S; Depauw, A M A; Katsonis, N; Jonkheijm, P; Cornelissen, J J L M

    2017-02-07

    Here we report on the covalent attachment of photoresponsive azobenzene moieties to cowpea chlorotic mottle virus (CCMV). The modified virus capsids can be reversibly immobilized on cucurbit[8]uril (CB[8]) bearing surfaces via supramolecular complexation.

  19. <em>Sulfolobus tengchongensisem> Spindle-Shaped Virus STSV1: Virus-Host Interactions and Genomic Features

    DEFF Research Database (Denmark)

    Xiang, X.; Chen, L.; Huang, X

    2005-01-01

    A virus infecting the hyperthermophilic archaeon Sulfolobus tengchongensis has been isolated from a field sample from Tengchong, China, and characterized. The virus, denoted STSV1 (Sulfolobus tengchongensis spindle-shaped virus 1), has the morphology of a spindle (230 by 107 nm) with a tail...... contains a total of 74 open reading frames (ORFs), among which 14 have a putative function. Five ORFs encode viral structural proteins, including a putative coat protein of high abundance. The products of the other nine ORFs are probably involved in polysaccharide biosynthesis, nucleotide metabolism...

  20. Temporal evolution of mottles observed in H_alpha

    CERN Document Server

    Bostanci, Z F; Erdogan, Nurol Al

    2007-01-01

    In April 2002, H_alpha observations of the solar chromosphere with high spatial and spectral resolution were obtained with the Gottingen Fabry-Perot Spectrometer mounted in the Vacuum Tower Telescope (VTT) at the Observatorio del Teide/Tenerife. In this work, we analyze a short time sequence of a quiet region with chains of mottles. Some physical parameters of dark mottles are determined by using Beckers' cloud model which takes the source function, the Doppler width, and the velocity to be constant within the cloud along the line of sight. Here, we present the results of our study.

  1. Identification and Sequence Analysis of Liaoning Isolate of Pepper Mild Mottle Virus%辣椒轻斑驳病毒辽宁分离物的鉴定及序列分析

    Institute of Scientific and Technical Information of China (English)

    李晓冬; 安梦楠; 王冠中; 赵秀香; 吴元华

    2016-01-01

    采用鉴别寄主、血清学及RT-PCR检测的方法对采自辽宁省葫芦岛地区的辣椒病毒进行了分离与鉴定,并将克隆得到的病毒CP基因进行测序及同源性比较.结果表明:该病毒分离物可侵染辣椒(Capsicum frutescens)产生局部枯斑、系统斑驳或花叶;局部侵染普通烟(Nicotiana tabacum)、心叶烟(Nicotiana glutinosa)、三生烟(Nicotiana tabacum.var.samsun)、矮牵牛(Petunia hybrida)产生坏死枯斑,在曼陀罗(Datura stramonium)、洋酸浆(Physalis pubescens)和苋色藜(Chenopodium amaranticolor)上引起褪绿斑;不能侵染番茄(Lycopersicon esculentum)、葫芦(Lagenaria siceraria)、甜瓜(Cucumisnelo)、黄瓜(Cucumis sativus)、千日红(Gomphrena globosa)、白菜(Brassica pekinensis)、百日草(Zinnia elegans)、蚕豆(Vicia faba)和玉米(Zea mays).辣椒病叶、病果和种子及表现症状的鉴别寄主叶片经DAS-ELISA检测均证实存在辣椒轻斑驳病毒(Pepper mildmottle virus,PMMoV).通过RTPCR技术成功克隆获得该病毒CP基因,测序并分析其同源性表明,该分离物与GenBank上已报道的13个国内外PMMoV分离物同源性很高,核苷酸和氨基酸同源性均为94%~100%.将该分离物与其他13个PMMoV分离物的CP基因序列一起构建系统发育进化树分析表明,该分离物与各亚洲分离物亲缘关系密切,并与国内各分离物可能具有相同的进化祖先.综上所述,辽宁辣椒上发现的病毒可鉴定为辣椒轻斑驳病毒辽宁分离物(PMMoV-LN),此为辽宁辣椒生产区首次报道.由于PMMoV具有典型的种传特性,而我国目前尚未将其列为检疫对象,这将促进病毒的快速扩展蔓延,因此应重视该病毒的危害性及对我国辣椒生产的潜在威胁,并加强其抗病育种和检验检疫工作以达到对PMMoV防控的目的.

  2. Stability of <em>Barley stripe mosaic virus em>induced gene silencing in barley

    DEFF Research Database (Denmark)

    Bruun-Rasmussen, Marianne; Madsen, Christian Toft; Jessing, Stine

    2007-01-01

    Virus-induced gene silencing (VIGS) can be used as a powerful tool for functional genomics studies in plants. With this approach, it is possible to target most genes and downregulate the messenger (m)RNA in a sequence-specific manner. Barley stripe mosaic virus (BSMV) is an established VIGS vector...... for barley and wheat; however, silencing using this vector is generally transient, with efficient silencing often being confined to the first two or three systemically infected leaves. To investigate this further, part of the barley Phytoene desaturase (PDS) gene was inserted into BSMV and the resulting...... inoculation, although large parts of the insert had been lost from the virus vector. The instability of the insert, observed consistently throughout our experiments, offers an explanation for the transient nature of silencing when using BSMV as a VIGS vector....

  3. Anti-Hepatitis B Virus Activity of Chickweed [<em>Stellaria mediaem> (L. Vill.] Extracts in HepG2.2.15 Cells

    Directory of Open Access Journals (Sweden)

    Donghao Xie

    2012-07-01

    Full Text Available <em>Stellaria media em>(Linn. Villars is a traditional Chinese medicine that has been used for over 200 years, mainly for the treatment of dermatitis and other skin diseases. It has also been used as an anti-viral agent. All the fresh chickweed juice samples used in this study were prepared using macroporous resin and ultrafiltration technology. The anti-hepatitis B virus (HBV activity of <em>S. media em>was evaluated<em> in vitroem> using the human HBV-transfected liver cell line HepG2.2.15. The concentrations of hepatitis B surface antigen (HBsAg and hepatitis B e antigen (HBeAg in HepG2.2.15 cell culture medium were determined by enzyme-linked immunosorbent assay (ELISA after <em>S. mediaem>-n (SM-n treatment for 6 or 9 days. HBV DNA was quantified using transcription-mediated amplification and real-time polymerase chain reaction. In HepG2.2.15 cells, 30 μg/mL SM-3 effectively suppressed the secretion of HBsAg and HBeAg with inhibition rates of 27.92% and 25.35% after 6 days of treatment, respectively. Consistent with the reduction in HBV antigens, SM-3 also reduced the level of HBV DNA in a dose-dependent manner. The characterization and quantitation of the chemical composition of SM-3 showed the presence of flavonoid C-glycosides, polysaccharides, and protein, which exhibited diverse antiviral activities. In conclusion, our results demonstrate that SM-3 possesses potential anti-HBV activity<em> in vitroem>. This is the first report demonstrating the anti-HBV effects of <em>S. mediaem>, which is currently under early development as a potential anti-HBV drug candidate.

  4. Fontes de resistência em tomateiro aos begomovírus bissegmentados Tomato yellow spot virus e Tomato severe rugose virus Sources of resistance in tomato to bipartite begomoviruses Tomato yellow spot virus and Tomato severe rugose virus

    OpenAIRE

    2012-01-01

    Os begomovírus causam doenças de grande importância econômica em diversas culturas, principalmente em regiões tropicais e subtropicais. Juntamente com outras famílias de vírus, os begomovírus têm causado grande prejuízo para os produtores de tomate in natura e para processamento industrial. O objetivo deste trabalho foi avaliar o comportamento de 11 genótipos resistentes ao Tomato yellow leaf curl virus (TYLCV) frente à infecção pelos begomovírus Tomato yellow spot virus (ToYSV) e Tomato seve...

  5. Cryo-EM structure of a novel calicivirus, Tulane virus.

    Directory of Open Access Journals (Sweden)

    Guimei Yu

    Full Text Available Tulane virus (TV is a newly isolated cultivatable calicivirus that infects juvenile rhesus macaques. Here we report a 6.3 Å resolution cryo-electron microscopy structure of the TV virion. The TV virion is about 400 Å in diameter and consists of a T = 3 icosahedral protein capsid enclosing the RNA genome. 180 copies of the major capsid protein VP1 (∼57 KDa are organized into two types of dimers A/B and C/C and form a thin, smooth shell studded with 90 dimeric protrusions. The overall capsid organization and the capsid protein fold of TV closely resemble that of other caliciviruses, especially of human Norwalk virus, the prototype human norovirus. These close structural similarities support TV as an attractive surrogate for the non-cultivatable human noroviruses. The most distinctive feature of TV is that its C/C dimers are in a highly flexible conformation with significantly reduced interactions between the shell (S domain and the protruding (P domain of VP1. A comparative structural analysis indicated that the P domains of TV C/C dimers were much more flexible than those of other caliciviruses. These observations, combined with previous studies on other caliciviruses, led us to hypothesize that the enhanced flexibility of C/C dimer P domains are likely required for efficient calicivirus-host cell interactions and the consequent uncoating and genome release. Residues in the S-P1 hinge between the S and P domain may play a critical role in the flexibility of P domains of C/C dimers.

  6. Cryo-EM Structure of a Novel Calicivirus, Tulane Virus

    Science.gov (United States)

    Yu, Guimei; Zhang, Dongsheng; Guo, Fei; Tan, Ming; Jiang, Xi; Jiang, Wen

    2013-01-01

    Tulane virus (TV) is a newly isolated cultivatable calicivirus that infects juvenile rhesus macaques. Here we report a 6.3 Å resolution cryo-electron microscopy structure of the TV virion. The TV virion is about 400 Å in diameter and consists of a T = 3 icosahedral protein capsid enclosing the RNA genome. 180 copies of the major capsid protein VP1 (∼57 KDa) are organized into two types of dimers A/B and C/C and form a thin, smooth shell studded with 90 dimeric protrusions. The overall capsid organization and the capsid protein fold of TV closely resemble that of other caliciviruses, especially of human Norwalk virus, the prototype human norovirus. These close structural similarities support TV as an attractive surrogate for the non-cultivatable human noroviruses. The most distinctive feature of TV is that its C/C dimers are in a highly flexible conformation with significantly reduced interactions between the shell (S) domain and the protruding (P) domain of VP1. A comparative structural analysis indicated that the P domains of TV C/C dimers were much more flexible than those of other caliciviruses. These observations, combined with previous studies on other caliciviruses, led us to hypothesize that the enhanced flexibility of C/C dimer P domains are likely required for efficient calicivirus-host cell interactions and the consequent uncoating and genome release. Residues in the S-P1 hinge between the S and P domain may play a critical role in the flexibility of P domains of C/C dimers. PMID:23533651

  7. Detection and distribution of sweetpotato feathery mottle virus in ...

    African Journals Online (AJOL)

    Owner

    insured by bees. However, under ... foods) and contains several mineral elements and vitamins. The use of sweetpotato for human consumption ... These pathogens have a negative impact on yield ..... Among the many techniques for diseases.

  8. Variabilidade genética de Sugarcane mosaic virus, causando mosaico em milho no Brasil

    Directory of Open Access Journals (Sweden)

    Marcos Cesar Gonçalves

    2011-04-01

    Full Text Available O objetivo deste trabalho foi caracterizar biológica e molecularmente três isolados de Sugarcane mosaic virus (SCMV de lavouras de milho, analisá-los filogeneticamente e discriminar polimorfismos do genoma. Plantas com sintomas de mosaico e nanismo foram coletadas em lavouras de milho, no Estado de São Paulo e no Município de Rio Verde, GO, e seus extratos foliares foram inoculados em plantas indicadoras e submetidos à análise sorológica com antissoros contra o SCMV, contra o Maize dwarf mosaic virus (MDMV e contra o Johnsongrass mosaic virus (JGMV. Mudas de sorgo 'Rio' e 'TX 2786' apresentaram sintomas de mosaico após a inoculação dos três isolados, e o DAS-ELISA confirmou a infecção pelo SCMV. O RNA total foi extraído e usado para amplificação por transcriptase reversa seguida de reação em cadeia de polimerase (RT-PCR. Fragmentos específicos foram amplificados, submetidos à análise por polimorfismo de comprimento de fragmento de restrição (RFLP e sequenciados. Foi possível discriminar os genótipos de SCMV isolados de milho de outros isolados brasileiros do vírus. Alinhamentos múltiplos e análises dos perfis filogenéticos corroboram esses dados e mostram diversidade nas sequências de nucleotídeos que codificam para a proteína capsidial, o que explica o agrupamento separado desses isolados e sugere sua classificação como estirpes distintas, em lugar de simples isolados geográficos.

  9. Fontes de resistência em tomateiro aos begomovírus bissegmentados Tomato yellow spot virus e Tomato severe rugose virus

    OpenAIRE

    2012-01-01

    Os begomovírus causam doenças de grande importância econômica em diversas culturas, principalmente em regiões tropicais e subtropicais. Juntamente com outras famílias de vírus, os begomovírus têm causado grande prejuízo para os produtores de tomate in natura e para processamento industrial. O objetivo deste trabalho foi avaliar o comportamento de 11 genótipos resistentes ao Tomato yellow leaf curl virus (TYLCV) frente à infecção pelos begomovírus Tomato yellow spot virus (ToYSV) e Tomato seve...

  10. Monitoring survivability and infectivity of porcine epidemic diarrhea virus (PEDv in the infected on-farm earthen manure storages (EMS

    Directory of Open Access Journals (Sweden)

    Hein Min Tun

    2016-03-01

    Full Text Available In recent years, porcine epidemic diarrhea virus (PEDv has caused major epidemics, which has been a burden to North America's swine industry. Low infectious dose and high viability in the environment are major challenges in eradicating this virus. To further understand the survivability and infectivity of PEDv in the infected manure, we performed longitudinal monitoring in two open earthen manure storages (EMSs; previously referred to as lagoon from two different infected swine farms identified in the province of Manitoba, Canada. Our study revealed that PEDv could survive up to nine months in the infected EMS after the initial outbreak in the farm. The viral load varied among different layers of the EMS with an average of 1.1 × 105 copies/ml of EMS, independent of EMS temperature and pH. In both studied EMSs, the evidence of viral replication was observed through increased viral load in the later weeks of the samplings while there was no new influx of infected manure into the EMSs, which was suggestive of presence of potential alternative hosts for PEDv within the EMSs. Decreasing infectivity of virus over time irrespective of increased viral load suggested the possibility of PEDv evolution within the EMS and perhaps in the new host that negatively impacted virus infectivity. Viral load in the top layer of the EMS was low and mostly non-infective suggesting that environmental factors, such as UV and sunlight, could diminish the replicability and infectivity of the virus. Thus, frequent agitation of the EMS that could expose virus to UV and sunlight might be a potential strategy for reduction of PEDv load and infectivity in the infected EMSs.

  11. Prevalence of dental mottling in school-aged lifetime residents of 16 Texas communities.

    Science.gov (United States)

    Butler, W J; Segreto, V; Collins, E

    1985-01-01

    The severity of dental mottling in 2,592 school-aged, lifetime residents of 16 Texas communities was investigated in 1980-81 to identify factors associated with mottling and to construct a prediction model for the prevalence of mottling. The communities were selected to obtain a wide range of levels of fluoride in the drinking water. The children within each of the communities were contacted through their schools and received a dental examination to assess the severity of mottling. Information on demographic, dental health practice, and other candidate predictor variables was obtained from a questionnaire completed by a parent. A number of water quality measurements were also recorded for each community. White and Spanish-surname children had about the same prevalence of mottling while Blacks had a higher prevalence, odds ratio (OR) = 2.3, 95% confidence interval = 1.4, 3.7. Children from homes which had air conditioning had a lower prevalence of mottling (OR = .6, (0.4, 0.8)). The use of fluoride toothpaste or drops and the number of fluoride treatments were almost identical among those who did and did not develop moderate mottling. In addition to fluoride, total dissolved solids and zinc were water quality variables associated with mottling. PMID:4061713

  12. Cowpea Mosaic Virus-Encoded Protease Does Not Recognize Primary Translation Products of M RNAs from Other Comoviruses

    OpenAIRE

    Goldbach, Rob; Krijt, Jette

    1982-01-01

    The protease encoded by the large (B) RNA segment of cowpea mosaic virus was tested for its ability to recognize the in vitro translation products of the small (M) RNA segment from the comoviruses squash mosaic virus, red clover mottle virus, and cowpea severe mosaic virus (CPsMV, strains Dg and Ark), and from the nepovirus tomato black ring virus. Like M RNA from cowpea mosaic virus, the M RNAs from squash mosaic virus, red clover mottle virus, CPsMV-Dg, and CPsMV-Ark were all translated int...

  13. Fontes de resistência em tomateiro aos begomovírus bissegmentados Tomato yellow spot virus e Tomato severe rugose virus Sources of resistance in tomato to bipartite begomoviruses Tomato yellow spot virus and Tomato severe rugose virus

    Directory of Open Access Journals (Sweden)

    Francisco D Hurtado

    2012-12-01

    Full Text Available Os begomovírus causam doenças de grande importância econômica em diversas culturas, principalmente em regiões tropicais e subtropicais. Juntamente com outras famílias de vírus, os begomovírus têm causado grande prejuízo para os produtores de tomate in natura e para processamento industrial. O objetivo deste trabalho foi avaliar o comportamento de 11 genótipos resistentes ao Tomato yellow leaf curl virus (TYLCV frente à infecção pelos begomovírus Tomato yellow spot virus (ToYSV e Tomato severe rugose virus (ToSRV em condições de casa-vegetação. A inoculação das plantas foi realizada via biobalística no estádio de duas folhas verdadeiras. A infecção viral confirmou-se pelo desenvolvimento dos sintomas e pela técnica de hibridização dot blot. Selecionaram-se como promissores os genótipos STY2, STY5, STY6 e L7, por não apresentarem sintomas e por terem concentrações virais muito baixas para os dois vírus. O espectro de resistência dos genes Ty-1 e Ty-2 não resultaram efetivos ante as espécies virais empregadas no estudo. As linhagens TY52, H24 e CLN2116B, portadoras destes genes, foram suscetíveis aos vírus ToYSV e ToSRV.Begomoviruses cause diseases of major economic importance in many crops, especially in tropical and subtropical regions. Together with other families of viruses, the begomoviruses cause great damage for producers of fresh and processed tomatoes. The objective of this study was to evaluate the behavior of 11 resistant genotypes to Tomato yellow leaf curl virus (TYLCV when infected by the begomoviruses Tomato severe rugose virus (ToSRV and Tomato yellow spot virus (ToYSV under greenhouse conditions. Tomato plants were inoculated by biobalistic method when displaying two true leaves. Viral infection was confirmed by visual observation of symptoms and by dot blot hybridization. Genotypes STY2, STY5, STY6 and L7 were selected as promising due to the absence of symptoms and very low viral

  14. 昆明麝香石竹斑驳病毒分离物的鉴定与提纯及高效价抗血清的制备%Identification,purification and high efficiency antiserum preparation of carnation mottle virus in Kunming

    Institute of Scientific and Technical Information of China (English)

    李婷婷; 方琦; 丁铭; 苏晓霞; 张丽珍; 张仲凯

    2008-01-01

    对引起云南鲜切花麝香石竹植株叶斑驳、花朵变小的病毒分离物应用酶联免疫吸附测定(ELISA)和电子显微镜技术(IEM)检测,直径大约28 nm.经TAS-ELISA测定仅与CsrMV标准抗体反应为阳性.鉴定为麝香石竹斑驳病毒(Carnation mottle vi-rus,CarMV)的分离株.对病株检测筛选后进行分离纯化,将提纯后的CarMV制备兔抗血清获得高效价的抗体,间接ELISA测定为1:10240.

  15. Control of aphid-vectored and thrips-borne virus spread in lily, tulip, iris and dahlia by sprays of mineral oil, polydimethylsiloxane and pyrethroid insecticide in the field

    NARCIS (Netherlands)

    Asjes, J.; Blom-Barnhoorn, G.J.

    2001-01-01

    In this study control of spread by insect vectors of non-persistent Lily symptomless virus and Lily mottle virus in lily, Tulip breaking virus in tulip, Iris mild mosaic virus, Narcissus latent virus and Iris severe mosaic virus in bulbous iris, and semi-persistent Dahlia mosaic virus and persistent

  16. Quantitative assessment of factors contributing to mottling of colored tablets II: formulation variables.

    Science.gov (United States)

    Armstrong, N A; March, G A

    1976-02-01

    The effects of several formulation variables were quantified with respect to factors affecting tablet mottling. Tablet mottling occurred with several commonly used binders and could not be prevented by using highly viscous binding solutions. However, mottling was reduced initially by increasing granule strength. Tablet diluents and dye-adsorbent materials had a profound effect on mottling, not by preventing dye migration but by affecting granule fragmentation on compression and the extent to which the dye-deficient material at the center of the granule was revealed. The lake form of FD&C Blue No. 1 was found to bleed in the presence of diluents that raised the pH of the granulating fluid above 6.4. Anionic impurities in the diluents also caused leaching of free dye and, consequently, increased tablet mottling. The conclusions from this study and previous papers were drawn together to give general principles for the production of uniformly colored tablets by aqueous granulation techniques.

  17. Influence of the surface roughness of coated and uncoated papers on the digital print mottle

    Directory of Open Access Journals (Sweden)

    Ivana Jurič

    2014-07-01

    Full Text Available Many factors influence the occurrence of print mottle in prints. In printing process three main components are involved: printing press, substrate and toner. They can be considered as separate components, but in most cases their interaction influences the quality of the print. The goal of this work was to examine the influence of surface roughness of different types of paper (coated and uncoated on print mottle of electrophotographic digital prints. We set up a hypothesis that print mottle will be more apparent on rougher surfaces. In the experimental part we printed four different substrates with different surface properties on electrophotographic printing press. Morphology of the papers surface was analysed using atomic force microscopy (AFM from which surface properties were calculated. For print mottle characterization Gray level co-occurrence matrix (GLCM method was used. Based on the measurements and results we can conclude, contrary to the initial hypothesis, that uncoated papers with rougher surfaces produce smaller print mottle values.

  18. Statistical Modelling of Print half-tone mottle in PET-G and PVC Shrink Films

    Directory of Open Access Journals (Sweden)

    Akshay V Joshi

    2016-11-01

    Full Text Available PVC and PET-G (Glycol modified polyethylene terephthalate have the highest consumption in the shrink sleeve market due to its high shrink abilities and cost effectiveness. The reproductions of fine tone details on these films are challenging as the occurrence of graininess and image-noise results in print defect such as print half-tone mottle. The presence of print half-tone mottle is visually disturbing leading to wastage of ink, substrate and time. The purpose of this study is to investigate the effect of gravure process parameters viz. ink viscosity, press speed, impression hardness and line screen and develop statistical model for print half-tone mottle in shrink films. The base line for print half-tone mottle was determined by conducting production runs on press with a defined set of process parameters and the target was set to minimize it from the baseline. The half-tone area was scanned and processed through SFDA algorithm to calculate print half-tone mottle. The design of experiments (DOE was generated for above-mentioned process parameters and was analysed by analysis of variance (ANOVA to find the significant factor affecting the print half-tone mottle. The analysis revealed line screen, viscosity and hardness as significant factors in minimizing print half-tone mottle. The results showed minimization of print half-tone mottle by 28% for both PVC and PET-G films. Furthermore, regression model was developed and validated for print half-tone mottle and a correlation coefficient (R2 of 0.8696 and 0.879 was achieved for PET-G and PVC respectively. The proposed model is helpful in determining the impact of gravure process parameters and prediction of print half-tone mottle in shrink films.

  19. Inter-species transmission of viral haemorrhagic septicaemia virus between turbot (<em>Scophthalmus maximusem>) and rainbow trout (<em>Onchorhynchus mykissem>)

    DEFF Research Database (Denmark)

    Schönherz, Anna; Lorenzen, Niels; Einer-Jensen, Katja

    Viral haemorrhagic septicaemia is a serious viral disease of teleost fish with high economic impact on the aquaculture industry. The disease is caused by the viral haemorrhagic septicaemia virus (VHSV), an RNA virus belonging to the family Rhabdoviridae. Compared to other rhabdoviruses infecting...... fish, VHSV has an exceptional wide host range of more than 70 species across marine and aquatic environments. To establish such a wide host range host-specific adaptation would be disadvantageous, nevertheless, host-specific differences in pathogenicity have been observed for VHSV. The divergence...... in pathogenicity, however, is not fully resembled in the phylogeny, which indicates a correlation between geographic regions rather than host species. The objective of this study was to identify whether VHSV has the ability to transmit between different host species or whether viral transmission is restrict to one...

  20. Ocorrência de vírus em batata em sete estados do Brasil Virus occurrence in potatoes in seven Brazilian States

    Directory of Open Access Journals (Sweden)

    Antônio Carlos de Ávila

    2009-12-01

    Full Text Available As viroses causam rápida degenerescência dos tubérculos-sementes de batata. Em condições tropicais, em que a presença de afídeos vetores é constante e a estrutura das populações de vírus é dinâmica, a pressão das doenças é enorme. Conhecer essa dinâmica é uma ferramenta importante para a sustentabilidade da produção de batata. Realizou-se um levantamento abrangente da ocorrência de viroses em batata no Brasil, além de estudar-se a distribuição das estirpes de Potato virus Y (PVY associadas ao mosaico da batata. Em 2005 e 2006 foram visitadas lavouras em sete estados brasileiros, coletando-se folíolos com sintomas de viroses (1.256 amostras e amostras aleatórias (360 amostras. Foi feita também uma estimativa visual da incidência de mosaico e enrolamento-das-folhas em vários dos campos visitados. Das 1.256 amostras suspeitas, 840 apresentaram reação positiva em teste sorológico para PVY (66,9%, 128 para Potato leaf roll virus (PLRV (10,2%, 79 para Potato virus S (PVS (6,3% e nenhuma para Potato virus X (PVX. Os resultados dos testes de detecção por DAS-ELISA, biológico e RT-PCR mostraram a presença quase absoluta do subgrupo necrótico de PVY, em sua maioria PVY NTN. A análise de uma sub-amostragem em todos os municípios visitados confirmou que essa variante está hoje presente nos sete estados visitados. Amostras de PVY NTN foram obtidas das cultivares Asterix, Atlantic, Agata, Achat, Baronesa, Baraka, Bintje, Caesar, Cupido, Marijke, Monalisa, Panda e Vivaldi, que apresentaram diferentes níveis de suscetibilidade. As amostras aleatórias revelaram um quadro muito similar ao encontrado com as amostras sintomáticas. PLRV foi identificado em MG, BA, PR e SC, em várias lavouras de forma muito freqüente. PVS foi identificado nesses mesmos estados e também em SP. PVX foi detectado em apenas uma amostra tomada ao acaso em Serra do Salitre (MG. O contraste entre a avaliação visual dos sintomas e os resultados

  1. Mottled Mice and Non-Mammalian Models of Menkes Disease.

    Science.gov (United States)

    Lenartowicz, Małgorzata; Krzeptowski, Wojciech; Lipiński, Paweł; Grzmil, Paweł; Starzyński, Rafał; Pierzchała, Olga; Møller, Lisbeth Birk

    2015-01-01

    Menkes disease is a multi-systemic copper metabolism disorder caused by mutations in the X-linked ATP7A gene and characterized by progressive neurodegeneration and severe connective tissue defects. The ATP7A protein is a copper (Cu)-transporting ATPase expressed in all tissues and plays a critical role in the maintenance of copper homeostasis in cells of the whole body. ATP7A participates in copper absorption in the small intestine and in copper transport to the central nervous system (CNS) across the blood-brain-barrier (BBB) and blood-cerebrospinal fluid barrier (BCSFB). Cu is essential for synaptogenesis and axonal development. In cells, ATP7A participates in the incorporation of copper into Cu-dependent enzymes during the course of its maturation in the secretory pathway. There is a high degree of homology (>80%) between the human ATP7A and murine Atp7a genes. Mice with mutations in the Atp7a gene, called mottled mutants, are well-established and excellent models of Menkes disease. Mottled mutants closely recapitulate the Menkes phenotype and are invaluable for studying Cu-metabolism. They provide useful models for exploring and testing new forms of therapy in Menkes disease. Recently, non-mammalian models of Menkes disease, Drosophila melanogaster and Danio rerio mutants were used in experiments which would be technically difficult to carry out in mammals.

  2. Mottled mice and non-mammalian models of Menkes disease

    Directory of Open Access Journals (Sweden)

    malgorzata elenartowicz

    2015-12-01

    Full Text Available Menkes disease is a multi-systemic copper metabolism disorder caused by mutations in the X-linked ATP7A gene and characterised by progressive neurodegeneration and severe connective tissue defects. The ATP7A protein is a Copper (Cu-transporting ATPase expressed in all tissues and plays a critical role in the maintenance of copper homeostasis in cells of the whole body. ATP7A participates in copper absorption in the small intestine and in copper transport to the CNS across the blood-brain-barrier and blood–cerebrospinal fluid- barrier. Cu is essential for synaptogenesis and axonal development. In cells, ATP7A participates in the incorporation of copper into Cu-dependent enzymes during the course of its maturation in the secretory pathway. There is a high degree of homology (>80% between the human ATP7A and murine Atp7a genes. Mice with mutations in the Atp7a gene, called mottled mutants, are well-established and excellent models of Menkes disease. Mottled mutants closely recapitulate the Menkes phenotype and are invaluable for studying Cu-metabolism. They provide useful models for exploring and testing new forms of therapy in Menkes disease. Recently, non-mammalian models of Menkes disease, Drosophila melanogaster and Danio rerio mutants were used in experiments which would be technically difficult to carry out in mammals.

  3. Natural Spread of Plant Viruses by Birds

    NARCIS (Netherlands)

    Peters, D.; Engels, C.; Sarra, S.

    2012-01-01

    Observations made in Mali strongly suggest that Rice yellow mottle virus (RYMV) is spread by weaverbirds (Quelea quelea) below and around baobab trees (Adansonia digitata) in which they nest. Rice leaves in bird nests appeared to be infected. In Spain, an infection of Southern bean mosaic virus (SBM

  4. Simultaneous multiplex PCR detection of seven cucurbit-infecting viruses.

    Science.gov (United States)

    Kwon, Ji Yeon; Hong, Jin Sung; Kim, Min Jea; Choi, Sun Hee; Min, Byeong Eun; Song, Eun Gyeong; Kim, Hyun Hee; Ryu, Ki Hyun

    2014-09-01

    Two multiplex polymerase chain reaction (PCR) systems using dual priming oligonucleotide (DPO) primers were developed for the simultaneous detection of seven cucurbit-infecting viruses. One system allows for the detection of papaya ringspot virus, watermelon mosaic virus, and zucchini yellow mosaic virus, whereas the other permits the detection of cucumber green mottle mosaic virus, cucumber fruit mottle mosaic virus, kyuri green mottle mosaic virus, and zucchini green mottle mosaic virus. Viral species-specific DPO primers developed in this study detected as little as 10 fg/μl of viral RNA under monoplex conditions and 10 pg/μl of viral RNA under multiplex conditions. Multiplex PCR using the DPO primer sets was capable of amplifying viral genes at annealing temperatures ranging from 53 °C to 63 °C. Whereas the use of conventional primers gave rise to non-specific bands, the DPO primers detected target viral genes in the absence of non-specific amplification. When these DPO multiplex primer sets were applied to virus-infected cucurbit samples obtained in the field, multiple infection as well as single infection was accurately identified. This novel approach could also detect multiple viruses in infected seeds. The reliability of multiplex PCR systems using DPO primers for plant virus detection is discussed.

  5. De novo generation of defective interfering-like RNAs in broad bean mottle bromovirus.

    Science.gov (United States)

    Pogany, J; Romero, J; Huang, Q; Sgro, J Y; Shang, H; Bujarski, J J

    1995-10-01

    Broad been mottle virus (BBMV) is the only member of the bromoviruses that is known to accumulate defective-interfering (DI) RNAs (Romero et al., Virology 194, 576-584, 1993). De novo generation of DI-like RNAs was demonstrated during serial passages of BBMV in broad bean using either DI RNA-free virion RNA preparations or transcribed genomic RNA inocula. As for previously described DI RNAs, all but one of the characterized de novo generated DI-like RNAs were derived by a single in-frame deletion from the RNA2 component. The sole exception was derived by two shorter in-frame deletions from RNA2. The maintenance of an open reading frame by all DI-like RNAs suggests the importance of coding capacity and/or the shortened 2a protein in the accumulation of these RNAs during infection. The deletion junction sites were between nucleotides 1152 and 2366, suggesting that the retained regions are essential for the efficient accumulation of BBMV DI-like RNAs in planta. Short regions of sequence similarity and/or complementarity were revealed at the 5' and 3' junction borders. We speculate that these regions can facilitate DI (DI-like) RNA formation. In addition to DI-like RNAs, the full-length nucleotide sequences of RNA2 components of the Type and Morocco strains of BBMV are presented.

  6. Identification of Carnation Mottle Viruson Carnation in Kunming%昆明香石竹斑驳病毒鉴定

    Institute of Scientific and Technical Information of China (English)

    蔡红; 孔宝华; 吴建宇; 陈海如; 段永嘉

    2001-01-01

    从表现为叶斑驳、花碎色症状的香石竹病株上获得一病毒分离物,经电镜负染观察,该病毒为直径是28~33nm的球状粒子,病毒提取液经紫外光测定呈典型核蛋白吸收曲线,OD260/OD280=1.70;血清学反应与CarMV抗血清出现明显的沉淀线.由此,可基本认为该病毒分离物为香石竹斑驳病毒(Carnation mottle virus, CarMV).

  7. Mud volcano origin of the Mottled Zone, South Levant

    Directory of Open Access Journals (Sweden)

    Igor Novikov

    2013-09-01

    Full Text Available The Mottled Zone (MZ or Hatrurim Formation, which occurs near the Levantine Transform in the South Levant, has been studied during the last 150 years but its origin remains debatable. Mottled Zone Complex/Complexes (MZC/MZCs consist of brecciated carbonate and low-temperature calcium-hydrosilicate rocks, which include unusual high- and ultra-high-temperature low-pressure (HT-LP metamorphic mineral assemblages. The MZ has been regarded as a product of combustion of bituminous chalks of the Ghareb Fm. of Cretaceous (Maastrichtian age. In this paper we present detailed geographic, geomorphologic, structural and geological data from the MZCs of the South Levant, which show that the MZCs cannot be stratigraphically correlated with the Ghareb Fm., because MZC late Oligocene–late Pleistocene deposits occur within or unconformably, i.e., with stratigraphic hiatus, overlap both the late Cretaceous and, in places, Neogene stratigraphic units. We propose an alternative model for the formation of MZCs by tectonically induced mud volcanism during late Oligocene–late Pleistocene time. This model explains (i the presence of dikes and tube-like bodies, which consist of brecciated exotic clastic material derived from stratigraphically and hypsometrically lower horizons; (ii mineral assemblages of sanidinite facies metamorphism; (iii multi-stage character of HT-LP pyrometamorphism; and (iv multi-stage low-temperature hydrothermal alteration. High temperatures (up to 1500 °C mineral assemblages resulted from combustion of hydrocarbon gases of mud volcanoes. Mud volcanism was spatially and structurally related to neotectonic folds and deformation zones formed in response to opening of the Red Sea rift and propagation of the Levantine Transform Fault. Our model may significantly change the prospects for oil-and-gas deposits in the region.

  8. The "one-step" Bean pod mottle virus (BPMV)-derived vector is a functional genomics tool for efficient overexpression of heterologous protein, virus-induced gene silencing and genetic mapping of BPMV R-gene in common bean (Phaseolus vulgaris L.).

    Science.gov (United States)

    Pflieger, Stéphanie; Blanchet, Sophie; Meziadi, Chouaib; Richard, Manon M S; Thareau, Vincent; Mary, Fanny; Mazoyer, Céline; Geffroy, Valérie

    2014-08-29

    Over the last two years, considerable advances have been made in common bean (Phaseolus vulgaris L.) genomics, especially with the completion of the genome sequence and the availability of RNAseq data. However, as common bean is recalcitrant to stable genetic transformation, much work remains to be done for the development of functional genomics tools adapted to large-scale studies. Here we report the successful implementation of an efficient viral vector system for foreign gene expression, virus-induced gene silencing (VIGS) and genetic mapping of a BPMV resistance gene in common bean, using a "one-step" BPMV vector originally developed in soybean. With the goal of developing this vector for high-throughput VIGS studies in common bean, we optimized the conditions for rub-inoculation of infectious BPMV-derived plasmids in common bean cv. Black Valentine. We then tested the susceptibility to BPMV of six cultivars, and found that only Black Valentine and JaloEEP558 were susceptible to BPMV. We used a BPMV-GFP construct to detect the spatial and temporal infection patterns of BPMV in vegetative and reproductive tissues. VIGS of the PHYTOENE DESATURASE (PvPDS) marker gene was successfully achieved with recombinant BPMV vectors carrying fragments ranging from 132 to 391 bp. Finally, we mapped a gene for resistance to BPMV (R-BPMV) at one end of linkage group 2, in the vicinity of a locus (I locus) previously shown to be involved in virus resistance. The "one-step" BPMV vector system therefore enables rapid and simple functional studies in common bean, and could be suitable for large-scale analyses. In the post-genomic era, these advances are timely for the common bean research community.

  9. Multiplex RT-PCR detection of four aphid-borne strawberry viruses in Fragaria spp. in combination with a plant mRNA specific internal control

    NARCIS (Netherlands)

    Thompson, J.R.; Wetzel, S.; Klerks, M.M.; Vasková, D.; Schoen, C.D.; Spak, J.; Jelkmann, W.

    2003-01-01

    The principal aphid-borne viruses infecting Strawberry (Fragaria spp.) Strawberry crinkle virus (SCV), Strawberry mild yellow edge virus (SMYEV), Strawberry mottle virus (SMoV) and Strawberry vein banding virus (SVBV) can cause serious crop losses. In this paper, a multiplex reverse transcriptase po

  10. Survival and recovery rates of mottled ducks banded in Texas and Louisiana

    Science.gov (United States)

    Haukos, David A.

    2015-01-01

    The Western Gulf Coast population of the mottled duck (Anas fulvigula) is dependent on the Gulf coastal marsh to complete its entire life cycle. Band recovery data can be used to monitor mottled duck populations by estimating annual survival, indexing harvest rate, and assessing movements. Band returns from hunting seasons 1997–2013 were used to evaluate factors influencing annual survival, recovery rates, and movements of mottled ducks in Texas and Louisiana. For banding years of 1997–2013, 58,349 normal, wild mottled ducks were banded and released in Texas and Louisiana. Since 2002, 86% of mottled duck bandings have occurred on the Chenier Plain of Texas and Louisiana. Hunters shot, recovered, and reported 7,061birds with bands during this period. Direct recovery rates were greater for juveniles than adults but changed little since the 1970s. Estimates of annual survival did not differ between Texas and Louisiana, but did among years and between sex and age classes. Adult male and juvenile female mottled ducks had the greatest and lowest annual survival rates, respectively. Recovery of birds banded on the Chenier Plain was four times greater for birds banded in Texas and harvested in Louisiana than banded in Louisiana and harvested in Texas. Much of the current inference of results from banding mottled ducks is limited to the Chenier Plain. To monitor the entire Western Gulf Coast population of mottled ducks, managers can consider expanding operational banding operations with annual quotas, which would improve survival and recovery estimates and allow for inference beyond the Chenier Plain region.

  11. Stability of Citrus tristeza virus protective isolates in field conditions Estabilidade de isolados protetores contra Citrus tristeza virus em condições de campo

    Directory of Open Access Journals (Sweden)

    Alessandra Tenório Costa

    2010-07-01

    Full Text Available The objective of this work was to monitor the maintenance of Citrus tristeza virus (CTV protective isolates stability in selected clones of 'Pêra' sweet orange (Citrus sinensis, preimmunized or naturally infected by the virus, after successive clonal propagations. The work was carried out in field conditions in the north of Paraná State, Brazil. Coat protein gene (CPG analysis of 33 isolates collected from 16 clones of 'Pêra' sweet orange was performed using single strand conformational polymorphism (SSCP. Initially, the isolates were characterized by symptoms of stem pitting observed in clones. Then viral genome was extracted and used as template for the amplification of CPG by reverse transcription polimerase chain reaction (RTPCR. RTPCR products electrophoretic profiles were analyzed using the Jaccard coefficient and the UPGMA method. The majority of the clones had weak to moderate stem pitting symptoms and its CTV isolates showed alterations in the SSCP profiles. However, the stability of the protective complex has been maintained, except for isolates from two analised clones. Low genetic variability was observed within the isolates during the studied years.O objetivo deste trabalho foi monitorar a manutenção da estabilidade de isolados protetores contra Citrus tristeza virus (CTV em clones selecionados de laranja 'Pêra' (Citrus sinensis pré-imunizados ou infectados naturalmente pelo vírus, após sucessivas propagações clonais. O trabalho foi realizado em condições de campo, no norte do Estado do Paraná. A análise do gene da capa protéica (GPC de 33 isolados, coletados de 16 clones de laranjeira 'Pêra', foi realizada com o uso da técnica polimorfismo conformacional da fita simples (SSCP. Inicialmente, os isolados foram caracterizados por meio de sintomas de caneluras observados nos clones. Em seguida, o genoma viral foi extraído e utilizado como molde para a amplificação do GCP com uso da transcrição reversa da rea

  12. Herança da resistência a Watermelon mosaic virus em melancia

    Directory of Open Access Journals (Sweden)

    Lindomar Maria da Silveira

    2014-08-01

    Full Text Available Entre as doenças que ocorrem na cultura da melancia (Citrullus lanatus, a virose ocasionada por Watermelon mosaic virus (WMV se destaca entre as principais, sendo a resistência genética a forma mais indicada de controle. Dessa forma, é importante o conhecimento do controle genético da resistência que se pretende trabalhar. Objetivando estudar a herança da resistência ao WMV em melancia, foram realizados cruzamentos entre o cultivar Crimson Sweet (CS suscetível e a linha L26 resistente. Populações segregantes e não segregantes obtidas dos cruzamentos foram inoculadas com um isolado de WMV e avaliadas quanto ao aparecimento de sintomas e à presença do vírus por testes de ELISA indireto contra antissoro específico para WMV. A hipótese de herança monogênica foi avaliada em diferentes graus médios de dominância e pelo método da máxima verossimilhança. Foram obtidas variâncias genética (σ²G, ambiental (σ²E, fenotípica (σ²F2, aditiva (σ²A e de dominância (σ²D, herdabilidades nos sentidos amplo (h²a e restrito (h²r. A herança monogênica foi rejeitada. O grau médio de dominância indicou efeito de dominância completa. As herdabilidades no sentido amplo foram baixas; portanto, constatou-se que o controle da resistência a WMV nas populações de melancia estudadas é do tipo oligogênica, com presença de efeitos aditivos e não aditivos e presença de genes maiores e poligenes.

  13. UNA virus: first report of human infection in Argentina Virus UNA: primeiro registro de infecção em humanos na República Argentina

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    Luis Adrián Diaz

    2003-04-01

    Full Text Available Una virus (UNAV, Togaviridae family, is widely distributed in South America, where infections have been detected in mosquitoes and vertebrate hosts (humans, birds and horses. We analyzed human sera from Córdoba inhabitants aged 44 to 89 years and using a neutralization test, we found a prevalence of UNAV antibodies of 3.8% (3/79. The low titers detected suggest past infections probably acquired in rural areas of the Province of Córdoba (central Argentina. None sera were found positive for MAYV neutralizing antibodies. This is the first report of human infections by UNAV in Argentina.O virus Una (Togaviridae tem ampla distribuição na América do Sul, detectando-se infecções até hoje em mosquitos e hospedeiros vertebrados (humanos, aves e cavalos. Mediante a realização do teste de neutralização em soros humanos provenientes de indivíduos entre 44 e 89 anos, da cidade de Córdoba, foi detectada uma prevalência de 3,8% (3/79 de anticorpos para o vírus UNA. Nenhum soro apresentou anticorpos para o vírus Mayaro. Os títulos foram baixos demonstrando-se a presença de infecção passada. Dados epidemiológicos indicam que a infecção ocorreu em áreas rurais da província de Córdoba (centro da Argentina. Os dados aqui expostos representam o primeiro registro de infecção de humanos por vírus Una na República Argentina.

  14. Blood lead exposure concentrations in mottled ducks (Anas fulvigula) on the upper Texas coast

    Science.gov (United States)

    McDowell, Stephen K.; Conway, Warren C.; Haukos, David A.; Moon, Jena A.; Comer, Christopher E.; Hung, I-Kuai

    2015-01-01

    The mottled duck (Anas fulvigula) is a non-migratory waterfowl species dependent upon coastal marsh systems, including those on the Texas Chenier Plain National Wildlife Refuge (NWR) Complex, and considered a regional indicator species of marsh habitat quality. Research from the early 1970s, 1990s, and early-2000s indicated that mottled ducks continued to exhibit elevated wing-bone lead (Pb) concentrations, decades after implementation of non-toxic shot regulations. However, wing-bone concentrations reflect lifetime accumulation of Pb, whereas blood Pb concentrations reflect more recent exposure. To identify current potentially relevant temporal windows of Pb exposure, we collected 260 blood samples from mottled ducks during summer (n=124) and winter (n=136) from 2010–2012 on the Texas Chenier Plain NWR Complex. We quantified baseline blood Pb concentrations for all ages of mottled ducks, and hypothesized that blood lead concentrations would remain elevated above background levels (200 µg L–1) despite the 1983 and 1991 lead shot bans. Blood Pb concentrations ranged from below detection limits to >12,000 µg L–1, where >200 µg L–1 was associated with exposure levels above background concentrations. Male mottled ducks had the greatest blood Pb concentrations (30 times greater than females) with concentrations greater during winter than summer. Likewise, the proportion of exposed (>200 µg L–1) females increased from 14%–47% from summer to winter, respectively. Regardless of sex, adult mottled duck blood Pb concentrations were five times greater than juveniles, particularly during winter. We identified five plausible models that influenced blood Pb levels where year, site, and interactions among age*sex*season and between age*season were included in the top-ranked models. Frequency of exposure was greatest during winter, increasing from 12% in summer to 55% in winter, indicating that a temporal exposure window to environmental Pb exists between nesting

  15. A Rare Case of Non-Small Cell Carcinoma of Lung Presenting as Miliary Mottling

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    Ballaekere Jayaram Subhashchandra

    2013-03-01

    Full Text Available Miliary mottling on chest radiography is seen in miliary tuberculosis, certain fungal infections, sarcoidosis, coal miner’s pneumoconiosis, silicosis, hemosiderosis, fibrosing alveolitis, acute extrinsic allergic alveolitis, pulmonary eosinophilic syndrome, pulmonary alveolar proteinosis, and rarely in hematogenous metastases from the primary cancers of the thyroid, kidney, trophoblasts, and some sarcomas. Although very infrequent, miliary mottling can be seen in primary lung cancers. Herein, we report the case of a 28-year-old female with chest X-ray showing miliary mottling. Thoracic computed tomography (CT features were suggestive of tuberculoma with miliary tuberculosis. CT-guided fine needle aspiration cytology confirmed the diagnosis as lower-lobe, left lung non-small cell carcinoma (adenocarcinoma. It is rare for the non-small cell carcinoma of the lung to present as miliary mottling. The rarity of our case lies in the fact that a young, non-smoking female with miliary mottling was diagnosed with non-small cell carcinoma of the lung.

  16. Vírus varicela zoster em paralisia de Bell: estudo prospectivo Varicella zoster virus in Bell's palsy: a prospective study

    Directory of Open Access Journals (Sweden)

    Mônica Alcantara de Oliveira Santos

    2010-06-01

    Full Text Available Embora a paralisia de Bell seja o tipo mais frequente de paralisia facial periférica,sua causa ainda é objeto de inúmeros questionamentos. A reativação do vírus varicela zoster tem sido considerada uma das principais causas da paralisia de Bell, porém, os poucos trabalhos que estudam a prevalência do VVZ como agente etiológico da PB são japoneses, o que determina características geográficas e populacionais bastante díspares de nossa população. OBJETIVOS: Verificar a frequência do vírus varicela zoster em saliva de indivíduos com PB, pela técnica de PCR. MATERIAL E MÉTODO: Estudo prospectivo com 171 pacientes com PFP, sendo 120 pacientes portadores de paralisia de Bell, com até uma semana de evolução, sem uso prévio de drogas antivirais. O grupo controle foi composto de 20 adultos sadios. Nestes indivíduos foram coletadas três amostras de saliva em semanas consecutivas, para pesquisa de DNA viral pela técnica de PCR. RESULTADOS: O vírus varicela zoster foi encontrado em amostras de saliva de dois pacientes com paralisia de Bell (1,7%. Nenhum vírus foi identificado no grupo controle. CONCLUSÃO: Foi verificada frequência de 1,7% para vírus varicela zoster em amostras de saliva de pacientes com paralisia de Bell, pela técnica de PCR.Although Bell's palsy is the major cause of acute peripheral facial palsy, its pathogenesis remains unknown. Reactivation of the varicella zoster virus has been implicated as one of the main causes of Bell's palsy, however, studies which investigate the varicella zoster virus reactivation in Bell's palsy patients are mostly Japanese and, therefore, personal and geographic characteristics are quite different from our population. AIMS: To determine varicella zoster virus frequency in saliva samples from patients with Bell's palsy, using PCR. MATERIAL AND METHOD: One hundred seventy one patients with acute peripheral facial palsy were prospectively enrolled in this study. One hundred twenty

  17. Cianobactérias e algas reduzem os sintomas causados por Tobacco vosaic virus (tmv em plantas de fumo

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    André B. Beltrame

    2011-06-01

    Full Text Available As algas e as cianobactérias produzem uma grande diversidade de compostos com atividade biológica direta sobre microrganismos ou agem como ativadores de mecanismos de resistência em plantas. Em vista disso, foi investigada a manifestação dos sintomas causados pelo Tobacco mosaic virus (TMV em plantas de fumo previamente tratadas com cianobactérias ou algas. Quando as folhas plantas de fumo foram tratadas dois dias antes da inoculação, foi verificado que suspensões de células dos isolados de cianobactérias 004/02, 008/02, Anabaena sp. e Nostoc sp. 61; e do isolado de alga 061/02, bem como as preparações do conteúdo intracelular do isolado 004/02 (4 C e do filtrado do meio de cultivo do isolado 061/02 (61 M apresentaram efeito na redução do número de lesões locais provocadas por TMV em folhas de plantas fumo, cultivar TNN. Além disso, foi observado que os isolados Anabaena sp., Nostoc sp. 21 (cianobactéria, Nostoc sp. 61 e 090/02 (alga mostraram efeito direto sobre o vírus semi-purificado. Em vista disso, pode-se sugerir que os isolados estudados sintetizam compostos que agem diretamente sobre o TMV e/ou ativam o mecanismo de defesa de plantas contra fitopatógenos.

  18. 3.5A cryoEM structure of hepatitis B virus core assembled from full-length core protein.

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    Xuekui Yu

    Full Text Available The capsid shell of infectious hepatitis B virus (HBV is composed of 240 copies of a single protein called HBV core antigen (HBc. An atomic model of a core assembled from truncated HBc was determined previously by X-ray crystallography. In an attempt to obtain atomic structural information of HBV core in a near native, non-crystalline environment, we reconstructed a 3.5Å-resolution structure of a recombinant core assembled from full-length HBc by cryo electron microscopy (cryoEM and derived an atomic model. The structure shows that the 240 molecules of full-length HBc form a core with two layers. The outer layer, composed of the N-terminal assembly domain, is similar to the crystal structure of the truncated HBc, but has three differences. First, unlike the crystal structure, our cryoEM structure shows no disulfide bond between the Cys61 residues of the two subunits within the dimer building block, indicating such bond is not required for core formation. Second, our cryoEM structure reveals up to four more residues in the linker region (amino acids 140-149. Third, the loops in the cryoEM structures containing this linker region in subunits B and C are oriented differently (~30° and ~90° from their counterparts in the crystal structure. The inner layer, composed of the C-terminal arginine-rich domain (ARD and the ARD-bound RNAs, is partially-ordered and connected with the outer layer through linkers positioned around the two-fold axes. Weak densities emanate from the rims of positively charged channels through the icosahedral three-fold and local three-fold axes. We attribute these densities to the exposed portions of some ARDs, thus explaining ARD's accessibility by proteases and antibodies. Our data supports a role of ARD in mediating communication between inside and outside of the core during HBV maturation and envelopment.

  19. An individual-based simulation model for mottled sculpin (Cottus bairdi) in a southern Appalachian stream

    Science.gov (United States)

    Brenda Rashleigh; Gary D. Grossman

    2005-01-01

    We describe and analyze a spatially explicit, individual-based model for the local population dynamics of mottled sculpin (Cottus bairdi). The model simulated daily growth, mortality, movement and spawning of individuals within a reach of stream. Juvenile and adult growth was based on consumption bioenergetics of benthic macroinvertebrate prey;...

  20. Population dynamics of mottled sculpin (PISCES) in a variable environment: information theoretic approaches

    Science.gov (United States)

    Gary D. Grossman; Robert E Ratajczak; J. Todd Petty; Mark D. Hunter; James T. Peterson; Gael Grenouillet

    2006-01-01

    We used strong inference with Akaike's Information Criterion (AIC) to assess the processes capable of explaining long-term (1984-1995) variation in the per capita rate of change of mottled sculpin (Cottus bairdi) populations in the Coweeta Creek drainage (USA). We sampled two fourth- and one fifth-order sites (BCA [uppermost], BCB, and CC [lowermost])...

  1. Restricted movement by mottled sculpin (Pisces: Cottidae) in a southern Appalachian stream.

    Science.gov (United States)

    J. Todd Petty; Gary D. Grossman

    2004-01-01

    1. We used direct observation and mark-recapture techniques to quantify movements by mottled sculpins (Cottus bairdi) in a 1 km segment of Shope Fork in western North Carolina. Our objectives were to: (i) quantify the overall rate of sculpin movement, (ii) assess variation in movement among years, individuals, and sculpin size classes, (iii) relate movement to...

  2. Mechanosensory based orienting behaviors in fluvial and lacustrine populations of mottled sculpin (Cottus bairdi)

    Science.gov (United States)

    Sheryl Coombs; Gary D. Grossman

    2006-01-01

    We compared prey-orienting and rheotactic behaviors in a fluvial (Coweeta Creek) and lacustrine (Lake Michigan) population of mottled sculpin. Blinded sculpin from both populations exhibited unconditioned, mechanosensory based rheotaxis to low velocity flows. Whereas Lake Michigan sculpin generally showed increasing levels of positive rheotaxis to increasing velocities...

  3. Antioxidant Activity in the Blood and Testes of the Mottled Brown ...

    African Journals Online (AJOL)

    IJAAAR

    Department of Animal Science, University of Ibadan, Ibadan, Nigeria. ... Key words: Reproductive potentials, Mottled brown male quail, Age groups, ... oxygen species (ROS)-generating systems. ... this risk, the testes have developed a ... centrifuge model of BOSCH 90-2) at 4000rpm .... human against oxidant and radical-.

  4. Characterization of Tomato yellow spot virus, a novel tomato-infecting begomovirus in Brazil Caracterização do Tomato yellow spot virus, um novo begomovírus isolado de tomateiro no Brasil

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    Renata Faier Calegario

    2007-09-01

    Full Text Available The objective of this work was the biological and molecular characterization of a begomovirus detected in São Joaquim de Bicas, Minas Gerais, Brazil, named TGV-[Bi2], by determining its host range, complete nucleotide sequence and phylogenetic relationships with other begomoviruses. Biological characterization consisted of a host range study using either sap inoculation or particle bombardment as inoculation methods. The yellow spot virus can infect plants in Solanaceae and Amaranthaceae, including economically importat crops as sweet pepper, and weeds as Datura stramonium and Nicotiana silvestris. For the molecular characterization, the full-length genome (DNA-A and DNA-B was amplified, cloned and completely sequenced. Sequence comparisons and phylogenetic analyses indicated that TGV-[Bi2] constitutes a novel begomovirus species named Tomato yellow spot virus (ToYSV, closely related to Sida mottle virus (SiMoV.O objetivo deste trabalho foi a caracterização biológica e molecular de um begomovírus detectado em tomateiros em São Joaquim de Bicas, Minas Gerais, denominado TGV-[Bi2]. A caracterização biológica consistiu em teste de gama de hospedeiros, realizado por meio de inoculação via extrato foliar tamponado ou bombardeamento de partículas. O isolado TGV-[Bi2] infecta plantas das famílias Solanaceae e Amaranthaceae, inclusive espécies economicamente importantes como o pimentão, e algumas plantas daninhas como Datura stramonium e Nicotiana silvestris. A caracterização molecular consistiu na clonagem e seqüenciamento de seu genoma completo (DNA-A e DNA-B. A comparação de seqüências e análise filogenética indicaram que o TGV-[Bi2] constitui uma nova espécie de begomovírus, denominada Tomato yellow spot virus (ToYSV, filogeneticamente relacionado ao Sida mottle virus (SiMoV.

  5. Survey on The Occurrence of Viruses Infecting Cucurbits in Yogyakarta and Central Java

    Directory of Open Access Journals (Sweden)

    Budi Setiadi Daryono

    2009-12-01

    Full Text Available Cucurbits are grown throughout the Java Island as dry season crops. Plants having mosaic, mottling, chlorosis and leaf distortion symptoms were frequently found in most of the cucurbit fields during the survey which conducted in Central Java including Sleman, Kulon Progo, and Klaten during July–September 2000 and 2001. Using double antibody sandwich enzyme-linked immunosorbent assay (DAS-ELISA; Cucumber mosaic virus (CMV, Cucumber green mottle mosaic virus (CGMMV and Kyuri green mottle mosaic virus (KGMMV were found infecting cucurbits. CMV was widespread, infecting 48.9% of the samples tested followed by CGMMV (12.8% and KGMMV (6.4%, while others samples (31.9% were not tested, double infections were common with 8.5 % of the samples being infected with two viruses (CGMMV and KGMMV and 34% with three viruses (CMV, CGMMV, and KGMMV. Severe mosaic and mottle symptoms were associated most often with single infection of CGMMV and KGMMV respectively. In addition, these are the first detections of CGMMV and KGMMV infecting cucurbit plants in Indonesia. Tanaman labu-labuan umumnya tumbuh sepanjang musim kemarau diPulau Jawa. Tanaman labu-labuan dengan gejala mosaik, klorosis, mottling dan bentuk daun serta buah yang berubah banyak dijumpai selama survei yang dilakukan di Kulon Progo, Sleman dan Klaten pada bulan Juli sampai September tahun 2000 dan 2001. Deteksi menggunakan metode double antibody sandwich enzyme-linked immunosorbent assay (DAS-ELISA telah berhasil mengetahui keberadaan dan infeksiCucumber mosaic virus(CMV,Cucumber green mottle mosaic virus (CGMMV dan Kyuri green mottle mosaic virus (KGMMV pada tanaman labu-labuan di tiga kabupaten tersebut. CMV menginfeksi tanaman labu-labuan tinggi yaitu 48,9% dari jumlah sampel tanaman yang dikoleksi, kemudian CGMMV (12,8% dan KGMMV(6,4%, sedangkan sebanyak 14 sampel tanaman (31,9%tidak dideteksi.Infeksi ganda banyak ditemukan dan 8,5 % sampel tanaman terinfeksi oleh dua jenis virus (CGMMV dan

  6. Symmetry-mismatch reconstruction of genomes and associated proteins within icosahedral viruses using cryo-EM

    Institute of Scientific and Technical Information of China (English)

    Xiaowu Li; Hongrong Liu; Lingpeng Cheng

    2016-01-01

    Although near-atomic resolutions have been routinely achieved for structural determination of many icosahedral viral capsids,structures of genomes and associated proteins within the capsids are still less characterized because the genome information is overlapped by the highly symmetric capsid information in the virus particle images.We recently developed a software package for symmetry-mismatch structural reconstruction and determined the structures of the genome and RNA polymerases within an icosahedral virus for the first time.Here,we describe the protocol used for this structural determination,which may facilitate structural biologists in investigating the structures of viral genome and associated proteins.

  7. Torque Teno Virus em amostras fezes de pacientes com gastroenterite : preval??ncia, distribui????o por genogrupos e carga viral

    OpenAIRE

    Nascimento, Carlos Augusto Pinho do

    2011-01-01

    O Torque teno virus (TTV) ?? um v??rus de DNA do g??nero Alphatorquevirus da fam??lia Anelloviridae. O TTV ?? altamente prevalente em popula????es de todo o mundo. Isolados foram classificados em cinco grupos filogen??ticos (1-5) com grande dist??ncia gen??tica entre eles. A presen??a do TTV j?? foi detectada nas fezes, por??m, n??o se sabe se todos os cinco genogrupos do TTV s??o excretados nas fezes, e qual a distribui????o do TTV entre os genogrupos. A fim de avaliar a pr...

  8. A High Throughput Soybean Gene Identification System Developed using Soybean Yellow Common Mosaic Virus (SYCMV)

    OpenAIRE

    Seo, Eun–Young; Cho, Seunghee; Moon, Jae Sun; Gotoh, Takafumi; Goto, Takafumi; Kim, Hong Gi; Domier, Leslie L; Lim, Seungmo; Kim, Kil Hyun; Moon, Jung–Kyung; Hammond, John; Lim, Hyoun–Sub; Song, Ki Hak

    2015-01-01

    Soybean yellow common mosaic virus (SYCMV) was recently reported from Korea, and a subsequent survey of soybean fields found that SYCMV, Soybean yellow mottle mosaic virus (SYMMV), and Soybean mosaic virus (SMV) infections were widespread. SYCMV has recently been developed into a Virus Inducing Gene Silencing (VIGS) vector for use as a reverse genetics tool for soybean, and here we report a modified SYCMV VIGS vector containing a new restriction enzyme site in the 3’ non–coding region into wh...

  9. First report of Potato virus V and Peru tomato mosaic virus on tamarillo (Solanum betaceum) orchards of Ecuador

    Science.gov (United States)

    In Ecuador, tamarillo (Solanum betaceum) represents an important cash crop for hundreds of small farmers. In 2013, leaves from tamarillo plants showing severe virus-like symptoms (mosaic, mottling and leaf deformation) were collected from old orchards in Pichincha and Tungurahua. Double-stranded RN...

  10. Caracterização de variantes de Grapevine Fanleaf Virus (GFLV), Arabis Mosaic Virus (ARMV) e respectivos RNAS satélites presentes em castas portuguesas de Vitis Vinifera

    OpenAIRE

    Reis, Rita Alexandra Feliciano dos

    2015-01-01

    Dissertação de mestrado, Biologia Molecular e Microbiana, Faculdade de Ciências e Tecnologia, Universidade do Algarve, 2015 Grapevine fanleaf virus, vírus do urticado ou nó-curto da videira e Arabis mosaic virus são dois Nepovirus, da família Secoviridae e ambos possuem um genoma bipartido de cadeia simples e sentido positivo. Além destes, foram detetados em alguns isolados de ArMV e GFLV, RNAs satélite de grande tamanho, satRNA do tipo B. Estes vírus encontram-se entre os principais agent...

  11. Fine mapping of the tomato yellow leaf curl virus resistance gene Ty-2 on chromosome 11 of tomato

    NARCIS (Netherlands)

    Yang, X.; Caro Rios, C.M.; Hutton, S.F.; Scott, J.W.; Guo, Y.; Wang, Xiaoxuan; Rashid, H.; Szinay, D.; Jong, de J.H.S.G.M.; Visser, R.G.F.; Bai, Y.; Du, Y.

    2014-01-01

    Resistances to begomoviruses, including bipartite tomato mottle virus and monopartite tomato yellow leaf curl virus (TYLCV), have been introgressed to cultivated tomato (Solanumlycopersicum) fromwild tomato accessions. A major gene, Ty-2 from S. habrochaites f. glabratum accession ‘‘B6013,’’ that

  12. Immunocapture RT-PCR detection of<em> Bean common mosaic virus> and strain<em> blackeye cowpea mosaicem> in common bean and black gram in India

    DEFF Research Database (Denmark)

    Udayashankar, A.C.; Nayaka, S. Chandra; Niranjana, S.R.

    2012-01-01

    plant test, an electron microscopic observations, an enzyme linked immunosorbent assay and an immunocapture RT-PCR. The incidence of the two tested viruses in common bean and black gram seed samples was 1–6% and 0.5–3.5%, respectively in growing-on test evaluations. Electron microscopic observations...... revealed filamentous virion particles from the leaves of plants showing characteristic virus disease symptoms in growing-on and host inoculation tests. The identity of the strains was confirmed by immunocapture RT-PCR, with a final amplification product of approximately 700 bp for BCMV and BCMV...

  13. Virus-induced gene silencing reveals signal transduction components required for the Pvr9-mediated hypersensitive response in Nicotiana benthamiana.

    Science.gov (United States)

    Tran, Phu-Tri; Choi, Hoseong; Choi, Doil; Kim, Kook-Hyung

    2016-08-01

    Resistance to pathogens mediated by plant resistance (R) proteins requires different signaling transduction components and pathways. Our previous studies revealed that a potyvirus resistance gene in pepper, Pvr9, confers a hypersensitive response (HR) to pepper mottle virus in Nicotiana benthamiana. Our results show that the Pvr9-mediated HR against pepper mottle virus infection requires HSP90, SGT1, NDR1, but not EDS1. These results suggest that the Pvr9-mediated HR is possibly related to the SA pathway but not the ET, JA, ROS or NO pathways.

  14. reaction of rice cultivars to a virulent rice yellow mottle virus strain in ...

    African Journals Online (AJOL)

    Prof. Adipala Ekwamu

    undermine dissemination of new technologies and sustained productivity of the ... most virulent on RYMV susceptible cultivar (IR64), and thus used to constitute study treatment evaluated in the ..... (New Rice for Africa) - a compendium: Africa.

  15. First report of Maize chlorotic mottle virus and maize (corn) lethal necrosis in Kenya

    Science.gov (United States)

    In September 2011, high incidence of a new maize (Zea mays L.) disease was reported at lower elevations (1900 masl) in the Longisa division of Bomet County, Southern Rift Valley of Kenya. Later the disease was noted in Bomet Central division, spreading into the neighboring Chepalungu and Narok South...

  16. Wildlife Reservoirs of Canine Distemper Virus Resulted in a Major Outbreak in Danish Farmed Mink (<em>Neovison visonem>)

    DEFF Research Database (Denmark)

    Trebbien, Ramona; Chriél, Mariann; Struve, Tina

    2014-01-01

    A major outbreak of canine distemper virus (CDV) in Danish farmed mink (Neovison vison) started in the late summer period of 2012. At the same time, a high number of diseased and dead wildlife species such as foxes, raccoon dogs, and ferrets were observed. To track the origin of the outbreak virus...

  17. HERANÇA DA RESISTÊNCIA AO Papaya ringspot virus EM MELANCIA

    Directory of Open Access Journals (Sweden)

    LINDOMAR MARIA DA SILVEIRA

    2015-01-01

    Full Text Available Aiming to study the genetic control of Papaya ringspot virus, type watermelon (PRSV-W in watermelon, the cultivar Crimson Sweet (P1 – susceptible and L26 derived from PI 244019 (P2 – resistant, as well as the resulting populations F1, F2, RC11 and RC21 of the cross of both lines were evaluated. The trials were carried out in a greenhouse, and the evaluations were done using artificial inoculations with PRSV-W isolates. The seedling symptoms were recorded using a graded scale, and the serological evaluation was done with specific antiserum using indirect ELISA. The estimated variances of the populations were used to obtain the genetic (σ 2 G, the environmental (σ 2 E, phenotypic (σ 2 F2, additive (σ 2 A and dominance (σ 2 D variances as well as the broad (h2 a and narrow sense (h2 r heritabilities. The hypothesis of monogenic inheritance was tested under different presumed average degrees of dominance as well as using the maximum likelihood. The distribution of resistant plants in the segregating populations was different from a distribution based on monogenic inheritance for all presumed average degrees of dominance, therefore, the hypothesis of monogenic inheritance was rejected indicating that this character in the line L26 is controlled by more than one major gene with the presence of modifiers. The additive-dominant model was adequate to explain the type of gene action involved, and the epistatic effects were not important in the expression of the resistance. The estimated average degree of dominance indicated complete dominance. The broad sense heritabilities for the two variables analyzed were intermediate.

  18. Phylogenetic analysis of Tomato mosaic virus from Hemerocallis sp. and Impatiens hawkeri Análise filogenética de Tomato mosaic virus isolado de Hemerocallis sp. e Impatiens hawkeri

    Directory of Open Access Journals (Sweden)

    Lígia Maria Lembo Duarte

    2007-12-01

    , respectivamente, assim como estabelecer relações filogenéticas entre os isolados e outras espécies de Tobamovirus, foram realizados extrações do RNA, RT-PCR, seqüenciamento do gene da capa protéica e análises filogenéticas. Quando foram comparadas seqüências homólogas de tobamovirus, valores superiores a 98,5% de identidade, ao nível de nucleotídeos, foram obtidos com isolados do Tomato mosaic virus (ToMV. Em relação ao tobamo-H, foi encontrado 100% de identidade com o ToMV isolado de tomateiro da Austrália e do Peru. Com base em análise de máxima verossimilhança (MV, sugere-se que o tobamo-H e tobamo-I compartilham um ancestral comum com ToMV, Tobacco mosaic virus, Odontoglossum ringspot virus e Pepper mild mottle virus. A topologia da árvore reconstruída a partir de MV mostra um grupo monofilético, sustentado por 100% de "bootstrap", formado por vários isolados de ToMV de diferentes hospedeiras, incluindo ornamentais, a partir de diferentes localizações geográficas. Os resultados indicam que Hemerocallis sp.e I. hawkeri estão infectados pelo ToMV, sendo esse o primeiro relato desse vírus em ornamentais, no Brasil.

  19. Stock indexing and Potato virus Y elimination from potato plants cultivated in vitro Indexação de matrizes e eliminação do Potato virus Y em plantas de batata cultivadas in vitro

    Directory of Open Access Journals (Sweden)

    Luciana Cordeiro Nascimento

    2003-01-01

    S (PVS e Potato leafroll virus (PLRV. Materiais com reação positiva para PVY foram submetidos a tratamentos visando à eliminação viral. Microestacas (1,0 cm de comprimento com uma gema foram excisadas e inoculadas em meio nutritivo de Murashige & Skoog (MS, suplementado com 1,0 mg L-1 de cinectina, 0,00l mg L-1 de ácido naftaleno acético (ANA e 0,1 mg L-1 de ácido giberélico (GA3. Termoterapia a 37ºC, durante 30 e 40 dias, promoveu a eliminação do PVY em 20,0 e 37,5% no material testado, respectivamente. A quimioterapia foi realizada com Ribavirin (RBV, 5-Azacitidina (AZA e 3-Deazauridine (DZD. O RBV apresentou os melhores índices de erradicação de vírus com a obtenção de 55,5% de plantas sadias. Tratamentos simultâneos de termo e quimioterapia mostraram maior eficiência na eliminação viral, atingindo um percentual de plantas sadias da ordem de 83,3 com RBV, 70,0 com AZA e 50,0 com DZD.

  20. Restabelecimento ("recovery" em plantas de fumo atacadas pelo virus de "vira-cabeça"

    Directory of Open Access Journals (Sweden)

    R. Forster

    1942-12-01

    Full Text Available Observations were made with tobacco plants which, after being naturally infected in the field by the virus of "vira-cabeça", a disease identical to spotted wilt (3, not only resisted to it, but exhibited complete recovery. Several trials were carried out in order to ascertain the following points : 1 whether the recovery means a greater degree of individual constitutional resistance ; 2 whether it represents an acquired immunity or ; 3 whether it is just of pure accidental nature. Plants showing recovery were selfed and seeds collected from them sown in separate rows. The same procedure was always applied with the new recovered plants. Thus, strains of plants were obtained representing several succeeding generations of recovered plants. In 1940-41 recovery progenies were planted at two different transplanting periods. During the next season 1941-42 these progenies, which represented already one more generation in comparison with those of 1940-41, were planted in two districts where the average occurrence of "vira-cabeça" was different. The percentages of "vira-cabeça", observed in all trials, were submitted to statistical analysis, comparing the errors obtained for difference of districts, transplanting time, varieties and progenies representing several generations of recovered plants. Comparing the calculated errors it was found that the greatest effect in the occurrence of ' Vira-cabeça" observed should be attributed to different transplanting times or different districts. The selection of recovered plants showed no influence in lowering the incidence of * vira-cabeça" : hence the impossibility of getting types of tobacco resistant to "vira-cabeça" through selection of recovered plants. Plants were observed in the field that after the first recovery exhibited symptoms of the disease, and then completely recovered from it again. This is in accordance with the results of Smith (11 in the reinoculation of tobacco plants after recovery from

  1. Further molecular characterization of weed-associated begomoviruses in Brazil with an emphasis on Sida spp Caracterização molecular adicional de begomovírus associados a plantas daninhas no Brasil, com ênfase em Sida spp

    Directory of Open Access Journals (Sweden)

    S.S. Tavares

    2012-06-01

    Full Text Available Begomoviruses are whitefly-transmitted, single-stranded DNA viruses that are often associated with weed plants. The aim of this study was to further characterize the diversity of begomoviruses infecting weeds (mostly Sida spp. in Brazil. Total DNA was extracted from weed samples collected in Viçosa (Minas Gerais state and in some municipalities of Alagoas state in 2009 and 2010. Viral genomes were amplified by RCA, cloned and sequenced. A total of 26 DNA-A clones were obtained. Sequence analysis indicated the presence of 10 begomoviruses. All viral isolates from Blainvillea rhomboidea belonged to the same species, Blainvillea yellow spot virus (BlYSV , thereby suggesting that BlYSV may be the only begomovirus present in this weed species. Four isolates represent new species, for which the following names are proposed: Sida yellow blotch virus (SiYBV, Sida yellow net virus (SiYNV, Sida mottle Alagoas virus (SiMoAV and Sida yellow mosaic Alagoas virus (SiYMAV. Recombination events were detected among the SiYBV isolates and in the SiYNV isolate. These results constitute further evidence of the high species diversity of begomoviruses in Sida spp. However, the role of this weed species as a source of begomoviruses infecting crop plants remains to be determined.Begomovírus são vírus de DNA circular fita simples transmitidos por mosca branca, os quais são frequentemente associados com plantas daninhas. O objetivo deste trabalho foi caracterizar a diversidade de begomovírus infectando plantas daninhas (principalmente Sida spp. no Brasil. DNA total foi extraído a partir de plantas daninhas coletadas em Viçosa (Minas Gerais e em alguns municípios do estado de Alagoas em 2009 e 2010. Os genomas virais foram amplificados por RCA, clonados e sequenciados. Um total de 26 clones de DNA-A foram obtidos. A análise das sequências indicou a presença de dez diferentes begomovírus. Todos os isolados originários de Blainvillea rhomboidea pertencem a uma

  2. Complex Assembly Behavior During the Encapsulation of Green Fluorescent Protein Analogs in Virus Derived Protein Capsules

    NARCIS (Netherlands)

    Minten, Inge J.; Nolte, Roeland J.M.; Cornelissen, Jeroen J.L.M.

    2010-01-01

    Enzymes encapsulated in nanocontainers are a better model of the conditions inside a living cell than free enzymes in solution. In a first step toward the encapsulation of multiple enzymes inside the cowpea chlorotic mottle virus (CCMV) capsid, enhanced green fluorescent protein (EGFP) was attached

  3. Solution scattering studies on a virus capsid protein as a building block for nanoscale assemblies

    NARCIS (Netherlands)

    Comellas Aragones, M.; Comellas-Aragones, Marta; Sikkema, Friso D.; Delaittre, Guillaume; Terry, Ann E.; King, Stephen M.; Visser, Dirk; Heenan, Richard K.; Nolte, Roeland J.M.; Cornelissen, Jeroen Johannes Lambertus Maria; Feiters, Martin C.

    2011-01-01

    Self-assembled protein cages are versatile building blocks in the construction of biomolecular nanostructures. Because of the defined assembly behaviour the cowpea chlorotic mottle virus (CCMV) protein is often used for such applications. Here we report a detailed solution scattering study of the

  4. Transgenic cucumbers harboring the 54-kDa putative gene of Cucumber fruit mottle mosaic tobamovirus are highly resistant to viral infection and protect non-transgenic scions from soil infection.

    Science.gov (United States)

    Gal-On, Amit; Wolf, Dalia; Antignus, Yehezkel; Patlis, Larisa; Ryu, Ki Hyun; Min, Byoung Eun; Pearlsman, Malenia; Lachman, Oded; Gaba, Victor; Wang, Yongzeng; Shiboleth, Yoel Moshe; Yang, Jee; Zelcer, Aaron

    2005-02-01

    Cucumber fruit mottle mosaic tobamovirus (CFMMV) causes severe mosaic symptoms and yellow mottling on leaves and fruits and, occasionally, severe wilting of cucumber (Cucumis sativus L.) plants. No genetic source of resistance against this virus has been identified in cucumber. The gene coding for the putative 54-kDa replicase gene of CFMMV was cloned into an Agrobacterium tumefaciens binary vector, and transformation was performed on cotyledon explants of a parthenocarpic cucumber cultivar. R1 seedlings were screened for resistance to CFMMV by symptom expression, back inoculation on an alternative host and ELISA. From a total of 14 replicase-containing R1 lines, eight resistant lines were identified. Line 144--homozygous for the putative 54-kDa replicase gene--was immune to CFMMV infection by mechanical and graft inoculation, and to root infection following planting in CFMMV-infested soil. A substantial delay of symptom appearance was observed following infection by three additional cucurbit-infecting tobamoviruses. When used as a rootstock, line I44 protected susceptible cucumber scions from soil infection by CFMMV. This paper is the first report on protection of a susceptible cultivar against a soil-borne viral pathogen, by grafting onto a transgenic rootstock.

  5. Resistência ao mosaico Y, combinada com resistência ao mosaico comum, em tomateiro Tomato types combining resistance to tobacco mosaic and potato Y viruses

    Directory of Open Access Journals (Sweden)

    Hiroshi Nagai

    1972-01-01

    Full Text Available Derivados de tomateiro, que incorporam resistência ao vírus de mosaico Y (PVY e mosaico comum (TMV, foram obtidos do cruzamento entre a var. Ângela, resistente às estirpes locais do vírus de mosaico Y, e T 15-1-6-1, que é altamente resistente às estirpes locais do TMV, por meio de inoculação com dois vírus, retrocruzamentos para Ângela e seleção de gerações avançadas do híbrido. Tipos selecionados do tomateiro são homozigotos para os gens Tm-2ªe rt. Suas características comerciais são semelhantes às da var. Ângela. Espera-se que os novos tipos de tomateiro reduzam perdas causadas pela infecção com PVY e/ou TMV, evitem efeitos sinérgicos entre dois vírus em combinação, eliminem a infecção do tipo "internal browning" e também transmissão do TMV pelas sementes.A tomato variety named Angela, previously described, incorporates resistance to local strains of the potato virus Y group that occur in tomato plantings in São Paulo. This variety is well accepted by tomato growers and is being used as a basis for incorporation of other types of virus disease resistance. Derivatives incorporating resistance to potato Y and tobacco mosaic viruses were obtained from crosses between Ângela and T 15-1-6-1, a tomato type that is highly resistant to tobacco mosaic virus, by inoculation and selection of advance generations of the hybrid or by backcrossing, combined with selfing. The newly selected tomato types are homozygous for the recessive gene rt that controls resistance to potato Y virus and for Tm-2a that conditions tobacco mosaic virus resistance. Their commercial qualities are similar to those of the Ângela parent plant. The new tomato types, resistant to TMV and potato virus Y, are still being tested in a large scale before being released, but it is expected that they will reduce considerably the losses caused by infection with either of the two viruses, avoid injury from the synergistic effect of virus combinations in

  6. THE SUPPLEMENTARY RELATIONS BETWEEN THE PROTEINS OF MOTTLED GRAM BEAN AND CERTAIN OTHER CEREALS

    Institute of Scientific and Technical Information of China (English)

    罗登义

    2006-01-01

    @@ It has been well understood that a mixture of vegetable and animal proteins is of higher quality than the former alone, and also there are some remarkable instances of effective supplementing between the proteins of certain cereals and certain legume seeds[1]. In practice, it is very valuable for the selection of human diets and farm-animal relations. This question is especially important in China where the protein of the average diet are mainly of vegetable origin, in which about 83 percent are derived from cereals and 11 percent from beans[2]. However, a review of the literature indicates that no work has been done on the supplementary relationships of the protein of mottled gram bean with those of other cereals. The writer purchased, therefore, from the Peiping market some cheaper cereals commonly used in China, namely, yellow corn(黄玉米), red kaoliang(红高粱),oat meal(油麦面),panicled glutinous and non-glutinous millets(黄米及糜子米); and determined the supplementary values between the proteins of mottled gram bean and these cereals. The experimental details are communicated in the present paper.

  7. Breakdown of resistance in sweet pepper against Pepper yellow mosaic virus in Brazil Quebra da resistência em pimentão contra o Pepper yellow mosaic virus

    Directory of Open Access Journals (Sweden)

    Ricardo Gioria

    2009-04-01

    Full Text Available Plants of Capsicum annuum cv. Magali R, resistant to Pepper yellow mosaic virus (PepYMV, which showed severe yellow mosaic, leaf malformation and stunting were observed during the 2003/04 growing season in Lins, São Paulo State, Brazil. Potyvirus-like particles observed in leaf sap from infected plants under the electron microscope reacted with an antiserum against PepYMV in PTA-ELISA. In addition to C. annuum cv. Magali R, this potyvirus also infected systemically the resistant C. annuum cv. Rubia R. The nucleotide sequence of part of the CP gene of this potyvirus shared 96-98% identity with that of other PepYMV isolates. The partial nucleotide sequence of the 3' NTR showed 94-96% identity with that of PepYMV. These data indicate that this potyvirus is a resistance-breaking isolate of PepYMV.Plantas de Capsicum annuum cv. Magali R, resistentes ao Pepper yellow mosaic virus (PepYMV, exibindo sintomas severos de mosaico amarelo, malformação foliar e subdesenvolvimento foram encontradas em plantios na região de Lins, SP, Brasil, em 2003/04. Partículas semelhantes àquelas do gênero Potyvirus foram observadas em extrato foliar de planta infectada examinado em microscópio eletrônico de transmissão. O extrato foliar também reagiu com anti-soro contra o PepYMV em PTA-ELISA. Além de C. annuum cv. Magali R, esse potyvirus também infectou sistemicamente C. annuum cv. Rubia R, que é resistente ao PepYMV. A seqüência de nucleotídeos de parte do gene da proteína capsidial (CP desse potyvirus apresentou 96-98% de identidade com a de outros isolados do PepYMV. A seqüência parcial de nucleotídeos da região 3' não traduzida (3' NTR apresentou 94-96% de identidade com a do PepYMV. Esses resultados são indicativos de que o potyvirus que quebrou a resistência em pimentão é um isolado do PepYMV.

  8. PCR multiplex para a detecção de BSV e CMV em bananeiras micropropagadas Multiplex PCR for detection of Banana streak virus and Cucumber mosaic virus from micropropagated banana

    Directory of Open Access Journals (Sweden)

    Daniel Vasquez Figueiredo

    2007-09-01

    Full Text Available Um protocolo de PCR multiplex foi estabelecido para a detecção do Banana streak virus (BSV e do Cucumber mosaic virus (CMV em bananeiras micropropagadas. Estes vírus são responsáveis por perdas na produção de bananas em todo o mundo. Alguns trabalhos descrevem a integração do BSV no genoma B da bananeira. Contudo, a existência de bananeiras híbridas livres do BSV tem sido demonstrada. Ademais, determinadas estirpes do CMV não são transmitidas mecanicamente sob condições de laboratório, nem tampouco detectadas por testes sorológicos. Como conseqüência, a indexação de matrizes para cultura de tecido algumas vezes se mostra ineficiente. A metodologia apresentada neste trabalho sobrepõe esta dificuldade, pois se baseia na detecção do ácido nucléico viral presente em amostras foliares de bananeira. Na reação, foram usados os oligonucleotídeos BADNA 1A e BADNA 4, para a detecção do BSV, e "CMV senso" e "CMV antisenso" para a detecção do CMV. Após a eletroforese foi verificada a presença de dois fragmentos de DNA amplificados simultaneamente, um dos quais com 597 pb correspondente ao BSV e o outro, com 488 pb, correspondente ao CMV. Este resultado indica que o PCR multiplex pode ser utilizado como uma ferramenta adicional na indexação do BSV e do CMV em bananeiras propagadas por cultura de tecido.A protocol for multiplex PCR assay was established to detect both Banana streak virus (BSV and Cucumber mosaic virus (CMV in micropropagated banana cultivars. These viruses are responsible for losses in banana production worldwide. Previous reports have described the integration of BSV in banana genome B. However, the existence of hybrid BSV-free banana cultivars has been reported. Moreover, there have been reports that some CMV strains cannot be mechanically transmitted under laboratory conditions and are not always detected by serological assays. Therefore, the selection of virus-free mother plants for tissue culture is

  9. Two spinefoot colour morphs: mottled spinefoot Siganus fuscescens and white-spotted spinefoot Siganus canaliculatus are synonyms.

    Science.gov (United States)

    Hsu, T-H; Adiputra, Y T; Burridge, C P; Gwo, J-C

    2011-11-01

    Mottled spinefoot Siganus fuscescens and white-spotted spinefoot Siganus canaliculatus are two similar species that differ subtly in colouration and morphology. Three major mtDNA clades were identified for these species, but individuals were clustered by amplified fragment length polymorphism (AFLP) according to geography rather than morphology, suggesting that the colour morphs are interbreeding.

  10. Incorporação de resistência ao mosaico Y em tomateiro Incorporation of resistance to virus Y in tomato varieties

    Directory of Open Access Journals (Sweden)

    Hiroshi Nagai

    1969-01-01

    Full Text Available Sessenta tipos de tomateiros, entre selvagens e cultivados, foram testados por inoculação mecânica quanto à sua resistência a estirpes do vírus Y comuns em tomatais no Estado de São Paulo. Um nível satisfatório de resistência foi encontrado em L. pimpinellifolium NAV 1062 e numa variedade de tomate originária do Peru (P.I. 126410. Cruzamentos e retrocruzamentos entre L. pimpincllifolium NAV 1062 e P.I. 126410 com a variedade Santa Cruz e entre os dois primeiros tipos resistentes entre si indicaram que o caráter, alto nível de resistência ao vírus Y destes, é condicionado pelo mesmo par de gens recessivos. Progenies resultantes do cruzamento Santa Cruz x P. I. 126410 mostraram-se mais promissoras que as do cruzamento Santa Cruz x Lycopersicon pimpinellifolium NAV 1062. Seleções feitas em gerações avançadas do primeiro cruzamento, seguidas ou não de retrocruzamentos, deram origem a três grupos de linhagens que possuem características comerciais comparáveis às da variedade Santa Cruz e incorporam nível satisfatório de resistência a estirpes do grupo Y comuns em tomatais. Uma delas, denominada Angela, está sendo distribuída a lavradores, em caráter semi-experimental.Wild and cultivated tomato types were screened by mechanical inoculation, for resistance to strains of the potato virus Y complex common in tomato plantings in the State of São Paulo, Brazil. Out of 60 types tested, immunity to virus Y was found in Lycopersicon peruvianum var. detatum (P. I. 128660 and L. peruvianumvar. humifusum (P. I. 127829; a satisfactory resistance level was found in L. pimpinellifolium NAV 1062 and in an introduction from Peru (P. I. 126410. Difficulties were encountered in obtaining viable hybrids between the immune source plants (Lycopersicon peruvianum and the cultivated tomato varieties. This fact prevented the study of the inheritance of immunity to virus Y in tomato and its incorporation to cultivated types. The behavior

  11. Evidenciação de vírus patogênicos humanos em filés de peixe Detection of pathogenic virus in fish fillets

    Directory of Open Access Journals (Sweden)

    Ary Walter Schmid

    1977-09-01

    Full Text Available Foi desenvolvido método para a evidenciação de vírus em filés de peixe. Amostras de 50 gramas foram submetidas à agitação mecânica durante 5 min em 200 ml de água bidestilada esterilizada, em pH 7,3-7,5. As substâncias em suspensão foram removidas mediante uma filtração de clarificação. A suspensão clarificada foi em seguida submetida à ultrafiltração através de membrana de alginato de sódio, sendo esta posteriormente dissolvida em 2 ml de citrato de sódio a 3,8%. A suspensão obtida foi, a seguir, centrifugada a 10.000 rpm durante 20 min, a 4°C, adicionando-se ao sobrenadante penicilina, estreptomicina e anfotericina B. O isolamento de vírus foi feito em culturas primárias de células de rim de macaco rhesus, células HeLa e por inoculação em camundongos recém-nascidos. A identificação sorológica levou aos seguintes resultados: de 51 filés de peixe foram isoladas duas estirpes de poliovírus tipo 1, duas de poliovírus tipo 3 e uma de coxsackievírus B4, o que corresponde a uma percentagem de positividade de 9,8%*. A identificação intratípica das quatro estirpes de poliovírus isoladas revelou ser uma delas semelhante e as demais diferentes das estirpes vacinais.The purpose of this study was to develop a method for detection of virus in fish fillets. Samples (50g of fish fillets were minced and shaken for 5 min with 200 ml of doubled distilled water (pH 7.3-7.5. The mixture was clarified by filtration. This food extract was subjected to filtration through a sterile sodium alginate membrane, which was thereafter dissolved in 2 ml of a 3.8% sodium citrate solution, and centrifuged at 10000 rev/min for 20 min, at 4°C. Penicillin, streptomycin and amphotericin B were added to the supernatant fraction. Virus isolations were done in primary rhesus (Macaca mulatta monkey kidney cultures, HeLa cultures and newborn mice. Fifty one fish fillets were examined. The agents isolated were: 2 type 1 poliovirus, 2 type 3

  12. Genome sequence of a virus isolate from tamarillo (Solanum betaceum) in Colombia: evidence for a new potyvirus.

    Science.gov (United States)

    Gutiérrez, Pablo A; Alzate, Juan F; Marín Montoya, Mauricio

    2015-02-01

    Based on the results of a deep sequencing transcriptome study of tamarillo (Solanum betaceum), we report the genome sequence of a virus from this host plant. Since this probably represents a new member of the genus Potyvirus, the name tamarillo leaf malformation virus (TaLMV) has been proposed. Phylogenetic analysis reveals that TaLMV is the closest relative of Colombian datura virus (CDV), followed by three other potyviruses: tobacco etch virus, potato virus A and tobacco vein mottling virus. This is the first sequence of a potyvirus infecting Solanum betaceum containing the complete polyprotein coding region.

  13. Four viruses infecting figs in Western Saudi Arabia

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    Amal Y. ALDHEBIANI

    2015-12-01

    Full Text Available Many diseases are compromising fig production in Saudi Arabia and in particular those caused by viruses. RT-PCR assays were conducted on 80 samples collected from four fig-growing provinces in the West Mecca region of Saudi Arabia, including the Fatima, Khulais, Rabigh and Alshifa valleys. Samples consisted of leaf tissues taken from caprifig and common fig trees. The presence of Fig mosaic virus (FMV, Fig leaf mottle-associated virus 1 (FLMaV-1, Fig leaf mottle-associated virus 2 (FLMaV-2 and Fig mild mottle-associated virus (FMMaV was assessed from the samples. RT-PCR results showed that all four viruses were present in the surveyed areas with different proportions of infection. Incidence was 69% of samples, with a peak of 80%, from the Alshifa and Fatima valleys, 60% from Rabigh and 55% from Khulais valley. FLMaV-1 was the prevailing virus (55% of samples, followed by FMV (34%, whereas FLMaV-2 (11% of samples and FMMaV (6% were less common. Most of the mosaic symptoms observed in surveyed fig orchards occurred with the presence of FMV. However, many other symptoms remained unexplained because of the arduous task of determining the involvement of other fig-infecting viruses with mosaic disease. This is the first report of FMMaV and FLMaV-2 in Saudi Arabia, and of FMV and FLMaV-1 in western Saudi Arabia. The virus status of this crop is probably compromised and a sanitation programme is required to produce healthy plant material in Saudi Arabia.

  14. A virus-induced gene silencing method to study soybean cyst nematode parasitism in Glycine max

    OpenAIRE

    Kandoth, Pramod K; Heinz, Robert; Yeckel, Greg; Gross, Nathan W; Juvale, Parijat S; Hill, John; Whitham, Steven A.; Baum, Thomas J.; Mitchum, Melissa G.

    2013-01-01

    Background Bean pod mottle virus (BPMV) based virus-induced gene silencing (VIGS) vectors have been developed and used in soybean for the functional analysis of genes involved in disease resistance to foliar pathogens. However, BPMV-VIGS protocols for studying genes involved in disease resistance or symbiotic associations with root microbes have not been developed. Findings Here we describe a BPMV-VIGS protocol suitable for reverse genetic studies in soybean roots. We use this method for anal...

  15. Evidence for plant viruses in the region of Argentina Islands, Antarctica.

    Science.gov (United States)

    Polischuk, Valery; Budzanivska, Irena; Shevchenko, Tetyana; Oliynik, Svitlana

    2007-02-01

    This work focused on the assessment of plant virus occurrence among primitive and higher plants in the Antarctic region. Sampling occurred during two seasons (2004/5 and 2005/6) at the Ukrainian Antarctic Station 'Academician Vernadskiy' positioned on Argentina Islands. Collected plant samples of four moss genera (Polytrichum, Plagiatecium, Sanionia and Barbilophozia) and one higher monocot plant species, Deschampsia antarctica, were further subjected to enzyme-linked immunosorbent assay to test for the presence of common plant viruses. Surprisingly, samples of Barbilophozia and Polytrichum mosses were found to contain antigens of viruses from the genus Tobamovirus, Tobacco mosaic virus and Cucumber green mottle mosaic virus, which normally parasitize angiosperms. By contrast, samples of the monocot Deschampsia antarctica were positive for viruses typically infecting dicots: Cucumber green mottle mosaic virus, Cucumber mosaic virus and Tomato spotted wilt virus. Serological data for Deschampsia antarctica were supported in part by transmission electron microscopy observations and bioassay results. The results demonstrate comparatively high diversity of plant viruses detected in Antarctica; the results also raise questions of virus specificity and host susceptibility, as the detected viruses normally infect dicotyledonous plants. However, the means of plant virus emergence in the region remain elusive and are discussed.

  16. Effect of Potato virus X on total phenol and alkaloid contents in Datura stramonium leaves Efeito do Potato virus X no conteúdo de fenóis totais e alcalóides em folhas de Datura stramonium

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    Lígia Maria Lembo Duarte

    2008-02-01

    Full Text Available The present paper reports results of the effect of Potato virus X (PVX on the contents of total phenols and alkaloids in leaves of Datura stramonium. A significant decrease in the contents of phenols and alkaloids was observed in leaves inoculated with PVX (X-I. However, there was an increase in the percentage of phenols in leaves rubbed with phosphate buffer (C1-I and in leaves from the nodes immediately above, possibly induced by mechanical injury. Gas chromatography/mass spectroscopy revealed amounts of scopolamine in samples submitted to all treatments, except X-I, in which the amount of this alkaloid was low. High amounts of an unidentified compound (molecular ion m/z 302 and a prominent peak at m/z 129 were noted in extracts from leaves X-I, C1-I and leaves from the nodes immediately above the leaves inoculated with PVX. It is suggested that the synthesis and accumulation of the unidentified compound is a result of stress from mechanical injury and virus inoculation.O presente trabalho relata resultados sobre a ação do Potato virus X (PVX no conteúdo de fenóis totais e alcalóides em folhas de Datura stramonium. Uma diminuição significativa no conteúdo dessas substâncias foi observada nas folhas inoculadas com o PVX (X-I. Entretanto, houve um aumento na porcentagem de fenóis nas folhas friccionadas com tampão fosfato (C1-I e nas acima das friccionadas, possivelmente induzido por injúria mecânica. Cromatografia gasosa/espectroscopia de massas revelou quantidades de escopolamina nas amostras submetidas a todos os tratamentos, exceto em X-I, no qual a quantidade deste alcalóide foi baixa. Altas quantidades de uma substância não identificada (íon molecular m/z 302 e um proeminente pico a m/z 129 foram notadas em extratos a partir de folhas dos tratamentos X-I, C1-I e nas acima das inoculadas com o PVX. Sugere-se que a síntese e acúmulo da substância não identificada é um resultado do estresse causado pela injúria mec

  17. Serological Strains of Tobacco Ringspot Virus Transmitted by Xiphinema americanum.

    Science.gov (United States)

    Rush, M C

    1970-07-01

    Five serological strains of tobacco ringspot virus isolated from naturally infected tobacco in North Carolina, and a strain isolated from watermelon in the Rio Grande Valley of Texas were transmitted from cucumber to cucumber by mass-screened and handpicked Xiphinerna americanum from North Carolina. The Eucharis mottle strain from Peru was not transmitted, indicating that a specific strain-vector relationship may exist between the geographically isolated strains from North and South America.

  18. 利用多重RT-PCR技术检测草莓病毒的研究%Detection of strawberry viruses by multiplex RT-PCR

    Institute of Scientific and Technical Information of China (English)

    杨洪一; 张志宏; 李丽丽; 赵敏

    2007-01-01

    @@ 目前已报道侵染草莓的病毒有20多种,其中草莓斑驳病毒(Strawberry mottle virus,SMoV)、草莓轻型黄边病毒(Strawberry mild yellow edge virus,SMYEV)和草莓镶脉病毒(Strawberry vein banding virus,SVBV)是分布较广、危害较重的3种主要病毒.

  19. Ability of Aphis gossypii and Myzus persicae to Transmit Cucumber mosaic virus in Single and Mixed Infection with Two Potyviruses to Zucchini Squash Eficiência dos afídeos Aphis gossypii e Myzus persicae na transmissão do Cucumber mosaic virus em infecção simples e mista com dois Potyvirus para abobrinha de moita

    Directory of Open Access Journals (Sweden)

    Zayame Vegette Pinto

    2008-06-01

    Full Text Available The main objective of this work was to investigate the ability of Aphis gossypii and Myzus persicae to transmit Cucumber mosaic virus (CMV singly and mixed with two potyviruses (Papaya ringspot virus - type W, PRSV-W and Zucchini yellow mosaic virus, ZYMV, to zucchini squash plants (Cucurbita pepo. The results showed that the potyviruses in general were more efficiently transmitted by both species of aphids as compared to CMV. The transmission of PRSV-W, ZYMV and CMV separately was more efficient than in mixture.O objetivo desse trabalho foi estudar a eficiência de Aphis gossypii e Myzus persicae na transmissão do vírus do mosaico do pepino (Cucumber mosaic virus, CMV, isoladamente e em mistura com duas espécies de potyvirus (Vírus do mosaico do mamoeiro = Papaya ringspot virus - type W, PRSV-W e Vírus do mosaico amarelo da abobrinha = Zucchini yellow mosaic virus, ZYMV, para planta-testes de abobrinha de moita (Cucurbita pepo. Os dois potyvirus em geral foram transmitidos com mais eficiência pelas duas espécies de afídeos do que o CMV. A transmissão do PRSV-W, ZYMV e CMV, separadamente, foi mais eficiente do que em mistura.

  20. Prediction of protein-protein interactions in dengue virus coat proteins guided by low resolution cryoEM structures

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    Srinivasan Narayanaswamy

    2010-06-01

    Full Text Available Abstract Background Dengue virus along with the other members of the flaviviridae family has reemerged as deadly human pathogens. Understanding the mechanistic details of these infections can be highly rewarding in developing effective antivirals. During maturation of the virus inside the host cell, the coat proteins E and M undergo conformational changes, altering the morphology of the viral coat. However, due to low resolution nature of the available 3-D structures of viral assemblies, the atomic details of these changes are still elusive. Results In the present analysis, starting from Cα positions of low resolution cryo electron microscopic structures the residue level details of protein-protein interaction interfaces of dengue virus coat proteins have been predicted. By comparing the preexisting structures of virus in different phases of life cycle, the changes taking place in these predicted protein-protein interaction interfaces were followed as a function of maturation process of the virus. Besides changing the current notion about the presence of only homodimers in the mature viral coat, the present analysis indicated presence of a proline-rich motif at the protein-protein interaction interface of the coat protein. Investigating the conservation status of these seemingly functionally crucial residues across other members of flaviviridae family enabled dissecting common mechanisms used for infections by these viruses. Conclusions Thus, using computational approach the present analysis has provided better insights into the preexisting low resolution structures of virus assemblies, the findings of which can be made use of in designing effective antivirals against these deadly human pathogens.

  1. Viruses involved in chickpea stunt

    NARCIS (Netherlands)

    Horn, N.M.

    1994-01-01

    Chickpea stunt is the most important virus disease of chickpea <em>> ( <em>Cicer arietinumem> L). This disease is characterized by leaf chlorosis or leaf reddening (depending on the chickpea cultivar), plant stunting, internode shortening, reduction in size of

  2. Ocorrência do vírus da imunodeficiência felina e do vírus da leucemia felina em gatos domésticos mantidos em abrigos no município de Belo Horizonte Occurrence of feline immunodeficiency virus and feline leukemia virus in Sheltered domestic cats of Belo Horizonte

    Directory of Open Access Journals (Sweden)

    B.M. Teixeira

    2007-08-01

    Full Text Available Investigou-se a ocorrência da infecção pelo vírus da imunodeficiência felina (FIV e pelo vírus da leucemia felina (FeLV em gatos domésticos, provenientes de dois abrigos, no município de Belo Horizonte. Amostras de sangue de 145 animais foram coletadas e testadas para detecção do FIV pela reação em cadeia da polimerase (PCR. Destas amostras, 40 foram testadas para o antígeno p26 de FeLV por meio de ELISA. Observaram-se duas fêmeas (1,4% e quatro machos (2,8% positivos para FIV e nove fêmeas (22,5% e quatro machos (10,0% positivos para FeLV.The occurrence of the feline immunodeficiency virus (FIV and feline leukemia virus (FeLV was investigated in domestic cats from two shelters of Belo Horizonte. Samples from 145 cats were collected and tested for FIV by the polymerase chain reaction (PCR. Forty out of 145 samples were tested for FeLV p27 antigen by a commercial ELISA kit. Two females (1.4% and four males (2.8% were positive for FIV. For FeLV tests, 13 cats (32.5% were positive, being nine females (22.5% and four males (10.0%.

  3. Hepatopulmonary syndrome in a patient with AIDS and virus C cirrhosis (viral cirrhosis type C); Sindrome hepatopulmonar em paciente com cirrose por virus C e SIDA

    Energy Technology Data Exchange (ETDEWEB)

    Ferreira, Maria Angelica; Gazzana, Marcelo Basso [Hospital de Clinicas de Porto Alegre, RS (Brazil). Servico de Pneumologia; Barreto, Sergio Saldanha Menna; Knorst, Marli Maria [Rio Grande do Sul Univ., Porto Alegre, RS (Brazil). Faculdade de Medicina. Dept. de Medicina Interna

    2001-02-01

    Hepatopulmonary syndrome is characterized by a triad consisting of liver disorder, pulmonary vascular dilatation, and hypoxaemia. No case of hepatopulmonary syndrome associated with AIDS has been reported so far. In this study, the authors report the case of a 43-year woman with AIDS and virus C cirrhosis taking prophylactic cotrimoxazole for pneumocystosis and retroviral therapy. Upon admission, the patient presented dyspnoea, cyanosis, digital clubbing, vascular spiders, and normal chest examination. Chest X-ray revealed bilateral interstitial infiltration and evidenced increased alveolar-arterial gradient and liver function impairment. Intrapulmonary shunt was evidenced by contrast-enhanced echocardiography and radionuclide perfusion scanning, thus confirming hepatopulmonary syndrome. (author)

  4. Fine mapping of the tomato yellow leaf curl virus resistance gene Ty-2 on chromosome 11 of tomato

    OpenAIRE

    Yang, X.; Caro Rios, C.M.; Hutton, S.F.; Scott, J. W.; Guo, Y.; Wang, Xiaoxuan; Rashid, H.; Szinay, D.; de Jong; Visser, R.G.F.; Bai, Y.; Du, Y.

    2014-01-01

    Resistances to begomoviruses, including bipartite tomato mottle virus and monopartite tomato yellow leaf curl virus (TYLCV), have been introgressed to cultivated tomato (Solanum lycopersicum) from wild tomato accessions. A major gene, Ty-2 from S. habrochaites f. glabratum accession “B6013,” that confers resistance to TYLCV was previously mapped to a 19-cM region on the long arm of chromosome 11. In the present study, approximately 11,000 plants were screened and nearly 157 recombination even...

  5. Interspecific hybridization contributes to high genetic diversity and apparent effective population size in an endemic population of mottled ducks (Anas fulvigula maculosa)

    Science.gov (United States)

    Peters, Jeffrey L.; Sonsthagen, Sarah A.; Lavretsky, Philip; Rezsutek, Michael; Johnson, William P.; McCracken, Kevin G.

    2014-01-01

    Under drift-mutation equilibrium, genetic diversity is expected to be correlated with effective population size (Ne). Changes in population size and gene flow are two important processes that can cause populations to deviate from this expected relationship. In this study, we used DNA sequences from six independent loci to examine the influence of these processes on standing genetic diversity in endemic mottled ducks (Anas fulvigula) and geographically widespread mallards (A. platyrhynchos), two species known to hybridize. Mottled ducks have an estimated census size that is about two orders-of-magnitude smaller than that of mallards, yet these two species have similar levels of genetic diversity, especially at nuclear DNA. Coalescent analyses suggest that a population expansion in the mallard at least partly explains this discrepancy, but the mottled duck harbors higher genetic diversity and apparent N e than expected for its census size even after accounting for a population decline. Incorporating gene flow into the model, however, reduced the estimated Ne of mottled ducks to 33 % of the equilibrium Ne and yielded an estimated Ne consistent with census size. We also examined the utility of these loci to distinguish among mallards, mottled ducks, and their hybrids. Most putatively pure individuals were correctly assigned to species, but the power for detecting hybrids was low. Although hybridization with mallards potentially poses a conservation threat to mottled ducks by creating a risk of extinction by hybridization, introgression of mallard alleles has helped maintain high genetic diversity in mottled ducks and might be important for the adaptability and survival of this species.

  6. Daphne mosaic virus (DapMV), a new potyvirus from Daphne mezereum in the Czech Republic.

    Science.gov (United States)

    Fránová, J; Petrzik, K; Lesemann, D-E; Navrátil, M

    2006-04-01

    Daphne shrubs with light green rings and mosaic on leaves contained flexuous filamentous virions (696 x 13 nm) and cylindrical inclusions typical of the subdivision III of Edwardson's classification for inclusions induced by members of the family Potyviridae. Decoration tests using antisera to 67 potyviruses revealed distant serological relations among chilli veinal mottle virus, Colombian datura virus, papaya ringspot virus, tobacco vein mottling virus and yam mosaic virus. The 3' terminal region of the virus genome was amplified by RT-PCR using primers specific for cloned and sequenced members of the family Potyviridae. The most similar sequences in the GenBank were those of isolates of wild potato mosaic virus (WPMV) and yam mild mosaic virus (YMMV), originating from Peru and Guadeloupe, respectively. The new sequence had 63.2% and 61.9% nucleotide identity to WPMV and YMMV in the coat protein gene. The results suggest that the Czech isolate from daphne should be regarded as a new member of the genus Potyvirus. The name daphne mosaic virus (DapMV) is suggested for this virus.

  7. Avaliação da resistência a tobamovirus em acessos de Capsicum spp. Evaluation of resistance of Capsicum spp. genotypes to tobamovirus

    Directory of Open Access Journals (Sweden)

    Márcia Aparecida Cezar

    2009-02-01

    Full Text Available A resistência em Capsicum spp a tobamovírus é governada pelos genes L¹ a L4. Baseado na capacidade de alguns isolados suplantarem a resistência destes genes, os tobamovírus podem ser classificados nos patótipos P0, P1, P1-2 e P1-2-3. No Brasil, até o momento as três espécies de tobamovírus conhecidas são: Tobacco mosaic virus (TMV, Tomato mosaic virus (ToMV, pertencentes aos patótipos P0 e Pepper mild mottle virus (PMMoV pertencente ao patótipo P1-2, respectivamente e podem infectar pimentas e pimentões. Oitenta e seis genótipos de pimentão e pimenta foram avaliados quanto à resistência a tobamovírus, sendo 62 de Capsicum annuum, 18 de C. baccatum e seis de C. chinense. Oito acessos de C. annuum, seis de C. baccatum e os acessos ICA #39, Pimenta de cheiro e PI 152225 de C. chinense apresentaram reação de hipersensibilidade ao ToMV, enquanto que o acesso Ancho de C. annuum foi considerado tolerante, permanecendo assintomático, porém permitindo a recuperação do vírus quando inoculado em Nicotiana glutinosa. Para o PMMoV patótipo P1,2 foram avaliados os acessos de pimentão e pimenta considerados resistentes ao ToMV. Somente o PI 152225 de C. chinense desencadeou reação de hipersensibilidade ao PMMoV, sendo fonte potencial de resistência para programas de melhoramento a este vírus no Brasil.The resistance of Capsicum spp to tobamoviruses is conferred by the genes series L¹ to L4. Based on the ability of some isolates to overcome the resistance genes, the tobamovirus can be classificated in the pathotypes P0, P1, P1-2 and P1-2-3. In Brazil, at this moment there are three species of tobamovirus: Tobacco mosaic virus (TMV, Tomato mosaic virus (ToMV, belonging to pathotype P0 and Pepper mild mottle virus (PMMoV belonging to pathotype P1-2 respectively, that can infect sweet and hot peppers. Eighty-six genotypes of sweet and hot pepper were evaluated for the resistance to tobamovirus. Eigth genotypes of C. annuum, five

  8. Sources of resistance against the Pepper yellow mosaic virus in chili pepper Fontes de resistência ao Mosaico Amarelo do Pimentão em pimentas

    Directory of Open Access Journals (Sweden)

    Cíntia dos S Bento

    2009-06-01

    Full Text Available The Pepper yellow mosaic virus (PepYMV naturally infects chili and sweet pepper, as well as tomato plants in Brazil, leading to severe losses. This work reports the reaction to the PepYMV of 127 Capsicum spp. accessions, aiming at identifying resistance sources useful in breeding programs. The experiment was carried out in a completely randomized design, with eight replications, in greenhouse conditions. Plants were protected with an insect-proof screen to avoid virus dissemination by aphids. Leaves of Nicotiana debneyi infected with the PepYMV were used as the inoculum source. Plants were inoculated with three to four fully expanded leaves. A second inoculation was done 48 hours later to avoid escapes. Only the youngest fully expanded leaf was inoculated. Two plants were inoculated only with buffer, as negative control. Symptoms were visually scored using a rating scale ranging from 1 (assymptomatic plants to 5 (severe mosaic and leaf area reduction. Nine accessions were found to be resistant based on visual evaluation. Their resistance was confirmed by ELISA. Two resistance accessions belong to the species C. baccatum var. pendulum, while the seven other were C. chinense. No resistant accessions were identified in C. annuum var. annuum, C. annuum var. glabriusculum, and C. frutescens.O Mosaico Amarelo do Pimentão é causado pelo Pepper yellow mosaic virus (PepYMV e tem ocorrência natural na maioria das regiões produtoras de pimenta, pimentão e tomate do Brasil, causando sérias perdas nas culturas de pimentão e pimenta. Este trabalho teve como objetivo avaliar a resistência de 127 acessos de Capsicum spp. ao PepYMV, com o intuito de identificar fontes de resistência a serem utilizadas em programas de melhoramento. O experimento foi conduzido em delineamento inteiramente casualizado, com oito repetições, em casa de vegetação, protegida com tela à prova de insetos, para evitar a disseminação do vírus por afídeos vetores. Folhas

  9. Critical Analysis of Mottling and its Impact on Various Grades of Paper Substrates Printed under Conventional Sheet Fed Offset, Dry Toner & Liquid Toner Based Digital Print Engines

    Directory of Open Access Journals (Sweden)

    Rajendrakumar Anayath

    2016-03-01

    Full Text Available Mottle is one of the print quality factors which highly affect the final print in any printing system. Print mottle is without doubt one of the most important factors regarding visual impression of print quality in any printing system. It is usually the result of uneven ink layer or non-uniform ink absorption across the paper surface and it is more prominently visible in middle tone images or areas of uniform colour such as solids and continuous tone screen images. A mottled picture highly makes the picture smudgy and in most of the cases is not acceptable to the end user. It is required to print photographs with high sharpness and consistently from the very first print to the last print. Mottle pictures can also be observed visually and hence it needs utmost care and attention for enhancing the final print quality. Various types of mottles are generally resulted from the surface characteristics of the substrate, the setting and operation of the printing machines, and the behavior & characteristics of the printing ink.

  10. Virus-induced gene silencing in soybean and common bean.

    Science.gov (United States)

    Zhang, Chunquan; Whitham, Steven A; Hill, John H

    2013-01-01

    Plant viral vectors are useful for transient gene expression as well as for downregulation of gene expression via virus-induced gene silencing (VIGS). When used in reverse genetics approaches, VIGS offers a convenient way of transforming genomic information into knowledge of gene function. Efforts to develop and improve plant viral vectors have expanded their applications and have led to substantial advances needed to facilitate gene function studies in major row crops. Here, we describe a DNA-based Bean pod mottle virus (BPMV) vector system for both gene expression and VIGS in soybean and common bean.

  11. 昆明地区香石竹病毒病及综合防治研究%Studies on Carnation Virus Disease and Integrated Management in Kunming

    Institute of Scientific and Technical Information of China (English)

    蔡红; 孔宝华; 刘进元; 陈海如

    2001-01-01

    简要综述了昆明地区香石竹病毒病的研究进展。经鉴定,确认昆明地区香石竹上存在的病毒有:香石竹斑驳病毒(CarMV)、香石竹脉斑驳病毒(CarVMV)、香石竹潜隐病毒(CarLV)、香石竹蚀环病毒(CarERV)、香石竹坏死斑点病毒(CarNFV)。其中,CarMV是昆明地区香石竹上的优势病毒。同时,本文还提出了香石竹病毒病的综合防治策略,以供生产上运用。%This paper briefly summarized the research progress of carnation virus disease in Kunming. By identified procedure, we affirmed there are carnation mottle virus,carnation vein mottle virus,carnation latent virus,carnation etched ring virus and carnation necrotic fleck virus in Kunming area. Among these viruses, carnation mottle virus is the superior virus. Meanwhile, this paper also put forward the strategy of carnation virus disease's integrated management in order to supply in the producing.

  12. Resistance levels to two strains of Potato virus Y (PVY in transgenic potatoes cv. Achat Níveis de resistência ao Potato virus Y (PVY em batata cv. Achat

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    André N. Dusi

    2001-11-01

    Full Text Available Two transgenic potato clones of cv. Achat, denominated 1P and 63P were challenged with two Potato virus Y strains (PVY O and PVY N, under greenhouse conditions, to be evaluated for resistance to these strains. Optical density values of the Elisa readings of samples from the transgenic plants were compared to readings from samples of the inoculated non-transformed plants. Clone 1P was extremely resistant to both PVY strains, reflected by not being systemically infected. Clone 63P, however, presented partial resistance to both PVY strains as local or systemic infection was delayed in some days. These results confirm the previously reported extreme resistance to PVY of clone 1P.Dois clones transgênicos de batata, derivados da cv. Achat, denominados 1P e 63P foram desafiados com duas estirpes do Potato virus Y (PVY O PVY N, em condições de casa-de-vegetação, para avaliação do nível de resistência dos clones ao vírus. Os valores de densidade óptica das leituras dos testes de Elisa foram comparados a leituras dos clones não transformados e inoculados. O clone 1P apresentou extrema resistência a ambas as estirpes, não tendo sido observada infecção sistêmica nos dois ensaios. O Clone 63P apresentou resistência parcial às duas estirpes, refletida no retardo do aparecimento de infecções sistêmicas por duas semanas. Os resultados obtidos confirmam o alto nível de resistência do clone 1P, relatado anteriormente.

  13. The giant mottled eel, Anguilla marmorata, uses blue-shifted rod photoreceptors during upstream migration.

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    Feng-Yu Wang

    Full Text Available Catadromous fishes migrate between ocean and freshwater during particular phases of their life cycle. The dramatic environmental changes shape their physiological features, e.g. visual sensitivity, olfactory ability, and salinity tolerance. Anguilla marmorata, a catadromous eel, migrates upstream on dark nights, following the lunar cycle. Such behavior may be correlated with ontogenetic changes in sensory systems. Therefore, this study was designed to identify changes in spectral sensitivity and opsin gene expression of A. marmorata during upstream migration. Microspectrophotometry analysis revealed that the tropical eel possesses a duplex retina with rod and cone photoreceptors. The λmax of rod cells are 493, 489, and 489 nm in glass, yellow, and wild eels, while those of cone cells are 508, and 517 nm in yellow, and wild eels, respectively. Unlike European and American eels, Asian eels exhibited a blue-shifted pattern of rod photoreceptors during upstream migration. Quantitative gene expression analyses of four cloned opsin genes (Rh1f, Rh1d, Rh2, and SWS2 revealed that Rh1f expression is dominant at all three stages, while Rh1d is expressed only in older yellow eel. Furthermore, sequence comparison and protein modeling studies implied that a blue shift in Rh1d opsin may be induced by two known (N83, S292 and four putative (S124, V189, V286, I290 tuning sites adjacent to the retinal binding sites. Finally, expression of blue-shifted Rh1d opsin resulted in a spectral shift in rod photoreceptors. Our observations indicate that the giant mottled eel is color-blind, and its blue-shifted scotopic vision may influence its upstream migration behavior and habitat choice.

  14. Circulation of Eastern equine encephalitis, Western equine encephalitis, Ilhéus, Maguari and Tacaiuma viruses in equines of the Brazilian Pantanal, South America Circulação dos virus das encefalites equina do Leste e Oeste, Ilhéus, Maguari e Tacaiuma em equinos da região do Pantanal brasileiro, América do Sul

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    Lygia Busch Iversson

    1993-08-01

    Full Text Available Neutralizing antibodies to EEE (6.7%, WEE (1.2%, ILH (26.6%, MAG (28.2% and TCM (15.7% viruses were found in sera of 432 equines of the Brazilian Pantanal, area where undiagnosed horse deaths are frequently observed. A 4-fold rise in CF titer to EEE virus was detected in acute and convalescent sera of an encephalitis horse sacrified in 1992. Antibodies to EEE, ILH, MAG and TCM viruses were detected in horses less than 2 years old indicating recent circulation of these viruses in the Pantanal. The evidence of recent equine encephalitis associated with rising CF titer to EEE warrants a more intensive study with attempts to isolate virus from horses with clinical manifestations of encephalitis.Em um inquérito sorológico realizado em 432 equinos da região do Pantanal, território brasileiro, foram detectados anticorpos neutralizantes para os vírus EEE (6,7%, WEE (1,2%, ILH (26,6%, MAG (28,2% e TCM (15,7%. Detectou-se também em um cavalo com um quadro clínico de encefalite um aumento de 4 vezes no título de anticorpos fixadores de complemento para EEE em soros coletados nas fases aguda e convalescente da doença. Cavalos com menos de 2 anos de idade apresentaram anticorpos neutralizantes para EEE, ILH, MAG e TCM, indicando circulação recente desses vírus no Pantanal. Os achados justificam intensificar esses estudos na região com tentativas de isolamento de vírus de animais apresentando manifestações clínicas de encefalite.

  15. Ocorrência do vírus "vein enation (woody gall" em limão verdadeiro (Citrus limon burm. cv siciliano em Santa Catarina Occurrence of the "vein enetion (woody gall" virus in lemon (Citrus limon Burm. cv siciliano in the Santa Catarina state

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    O.L. KOLLER

    1998-01-01

    Full Text Available Relata-se a ocorrência do vírus causador da doença "vein enation", também conhecida por "woody gall", em plantas de limão verdadeiro, em Santa Catarina, introduzido em pomar comercial através de mudas adquiridas em São Paulo. Limão `Volkameriano' enxertado com material contaminado desenvolveu os sintomas característicos de "woody gall", com grande intensidade no Alto Vale do Itajaí, e com menor intensidade no Litoral Norte de Santa Catarina. Constatou-se redução no desenvolvimento das plantas e na produção de frutos. Todo material sabidamente contaminado foi erradicado. Sugere-se às instituições oficiais de pesquisa a realização de testes de indexação para esta virose em seus bancos de germoplasma, uma vez que grande parte das variedades cítricas não desenvolve os sintomas da doença.The presence of the vein enation virus, also known as woody gall virus, in Citrus limon, in Santa Catarina State, is reported. The virus was introduced through contamined nursery plants acquired in the São Paulo State. `Volkamer' lemon budded with contamined buds has developed typical woody gall symptoms, more frequently in Alto Vale do Itajaí (High Itajaí River Valley, and less frequently in Santa Catarina's Northern Coast. A significant decrease in plant development and fruit yield was been observed. All known contaminated material was erradicated. It is suggested that official research institutions carry out indexing tests for this virosis at their germplasm banks, since part of the citrus varieties fail to develop symptoms of this disease.

  16. Frequência de Lettuce big-vein associated virus e Mirafiori lettuce big-vein virus em Plantas de alface no Estado de São Paulo e transmissão através de extrato vegetal e solo Frequency of Lettuce big-vein associated virus and Mirafiori lettuce big-vein virus in symptomatic and assymptomatic lettuce plants and sap and soil transmission

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    Márcio Martinello Sanches

    2007-12-01

    Full Text Available A presença de sintomas de 'big vein' ou engrossamento das nervuras em alface e a associação do Lettuce big-vein associated virus (LBVaV e Mirafiori lettuce big-vein virus (MLBVV foram verificadas por RT-PCR utilizando-se oligonucleotídeos específicos para ambos os vírus. Foram coletadas 366 plantas sintomáticas nas regiões de Bauru, Campinas e Mogi das Cruzes no estado de São Paulo nos meses de junho e setembro de 2004 e abril e julho de 2005, e 18 plantas assintomáticas na região de Mogi das Cruzes no mês de dezembro de 2004. Infecção mista do LBVaV e MLBVV foi detectada em 76,2% das plantas sintomáticas, em 11,5% somente o MLBVV foi detectado e em 6,6% somente o LBVaV. Nas plantas assintomáticas coletadas em dezembro na região de Mogi das Cruzes, em áreas de alta incidência da doença durante o inverno, foi detectada a presença de MLBVV em 9 amostras e LBVaV em 7 amostras. Quatro dessas amostras apresentaram infecção mista, indicando que o desenvolvimento de sintomas depende de fatores abióticos, como temperatura. A inoculação via extrato vegetal a partir de plantas de alface com infecção mista pelo MLBVV e LBVaV foi realizada a 16°C/ 10°C (dia/noite e fotoperíodo de 11 horas, verificando-se que o MLBVV foi transmitido para Nicotiana tabacum TNN, N. rustica, N. occidentalis, Chenopodium quinoa e para as cultivares de alface Trocadero e White Boston, enquanto o LBVaV foi transmitido apenas para a alface White Boston. Entretanto, nenhuma destas plantas apresentou sintomas da doença, com exceção de C. quinoa que apresentou sintomas de lesões locais. Plantio em solo proveniente de áreas com histórico da doença de Mogi das Cruzes permitiu a transmissão do LBVaV para alface cv. White Boston e do MLBVV para alface cv. Trocadero e White Boston, embora apenas a cv. White Boston tenha apresentado sintomas da doença. Em conjunto, estes resultados demonstram a dificuldade de transmissão de ambos os vírus, mesmo em

  17. Rapid screening of RNA silencing suppressors by using a recombinant virus derived from beet necrotic yellow vein virus.

    Science.gov (United States)

    Guilley, H; Bortolamiol, D; Jonard, G; Bouzoubaa, S; Ziegler-Graff, V

    2009-10-01

    To counteract plant defence mechanisms, plant viruses have evolved to encode RNA silencing suppressor (RSS) proteins. These proteins can be identified by a range of silencing suppressor assays. Here, we describe a simple method using beet necrotic yellow vein virus (BNYVV) that allows a rapid screening of RSS activity. The viral inoculum consisted of BNYVV RNA1, which encodes proteins involved in viral replication, and two BNYVV-derived replicons: rep3-P30, which expresses the movement protein P30 of tobacco mosaic virus, and rep5-X, which allows the expression of a putative RSS (X). This approach has been validated through the use of several known RSSs. Two potential candidates have been tested and we show that, in our system, the P13 protein of burdock mottle virus displays RSS activity while the P0 protein of cereal yellow dwarf virus-RPV does not.

  18. Highly Specific Detection of Five Exotic Quarantine Plant Viruses using RT-PCR

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    Hoseong Choi

    2013-03-01

    Full Text Available To detect five plant viruses (Beet black scorch virus, Beet necrotic yellow vein virus, Eggplant mottled dwarf virus, Pelargonium zonate spot virus, and Rice yellow mottle virus for quarantine purposes, we designed 15 RT-PCR primer sets. Primer design was based on the nucleotide sequence of the coat protein gene, which is highly conserved within species. All but one primer set successfully amplified the targets, and gradient PCRs indicated that the optimal temperature for the 14 useful primer sets was 51.9°C. Some primer sets worked well regardless of annealing temperature while others required a very specific annealing temperature. A primer specificity test using plant total RNAs and cDNAs of other plant virus-infected samples demonstrated that the designed primer sets were highly specific and generated reproducible results. The newly developed RT-PCR primer sets would be useful for quarantine inspections aimed at preventing the entry of exotic plant viruses into Korea.

  19. Canine distemper virus infection in a lesser grison (Galictis cuja: first report and virus phylogeny Infecção pelo vírus da cinomose canina em um furão (Galictis cuja: primeiro relato e filogenia viral

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    Jane Megid

    2013-02-01

    Full Text Available Infectious diseases in wild animals have been increasing as a result of their habitat alterations and closer contact with domestic animals. Canine distemper virus (CDV has been reported in several species of wild carnivores, presenting a threat to wildlife conservation. We described the first case of canine distemper virus infection in lesser grison (Galictis cuja. A free-ranging individual, with no visible clinical sigs, presented sudden death after one day in captivity. Molecular diagnosis for CDV infection was performed using whole blood collected by postmortem intracardiac puncture, which resulted positive. The virus phylogeny indicated that domestic dogs were the probable source of infection.Doenças infecciosas em animais selvagens têm aumentado devido às alterações em seu habitat e ao maior contato com animais domésticos. A cinomose já foi descrita em diversas espécies de carnívoros selvagens, representando uma ameaça à conservação da vida selvagem. Nesse estudo é descrito o primeiro caso de infecção pelo vírus da cinomose em um furão (Galictis cuja. Um indivíduo de vida livre, sem sinais clínicos aparentes, apresentou morte súbita após um dia em cativeiro. Foi realizado o diagnóstico molecular para detecção do vírus da cinomose canina, sendo o resultado positivo. A filogenia do vírus indicou que cães domésticos foram a provável fonte de infecção.

  20. Development of transgenic watermelon resistant to Cucumber mosaic virus and Watermelon mosaic virus by using a single chimeric transgene construct.

    Science.gov (United States)

    Lin, Ching-Yi; Ku, Hsin-Mei; Chiang, Yi-Hua; Ho, Hsiu-Yin; Yu, Tsong-Ann; Jan, Fuh-Jyh

    2012-10-01

    Watermelon, an important fruit crop worldwide, is prone to attack by several viruses that often results in destructive yield loss. To develop a transgenic watermelon resistant to multiple virus infection, a single chimeric transgene comprising a silencer DNA from the partial N gene of Watermelon silver mottle virus (WSMoV) fused to the partial coat protein (CP) gene sequences of Cucumber mosaic virus (CMV), Cucumber green mottle mosaic virus (CGMMV) and Watermelon mosaic virus (WMV) was constructed and transformed into watermelon (cv. Feeling) via Agrobacterium-mediated transformation. Single or multiple transgene copies randomly inserted into various locations in the genome were confirmed by Southern blot analysis. Transgenic watermelon R(0) plants were individually challenged with CMV, CGMMV or WMV, or with a mixture of these three viruses for resistance evaluation. Two lines were identified to exhibit resistance to CMV, CGMMV, WMV individually, and a mixed inoculation of the three viruses. The R(1) progeny of the two resistant R(0) lines showed resistance to CMV and WMV, but not to CGMMV. Low level accumulation of transgene transcripts in resistant plants and small interfering (si) RNAs specific to CMV and WMV were readily detected in the resistant R(1) plants by northern blot analysis, indicating that the resistance was established via RNA-mediated post-transcriptional gene silencing (PTGS). Loss of the CGMMV CP-transgene fragment in R1 progeny might be the reason for the failure to resistant CGMMV infection, as shown by the absence of a hybridization signal and no detectable siRNA specific to CGMMV in Southern and northern blot analyses. In summary, this study demonstrated that fusion of different viral CP gene fragments in transgenic watermelon contributed to multiple virus resistance via PTGS. The construct and resistant watermelon lines developed in this study could be used in a watermelon breeding program for resistance to multiple viruses.

  1. Infecção experimental em cabritos pelo vírus da artrite encefalite Caprine arthritis encephalitis virus experimental infection in new-born kids

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    M.I.M.C. Guedes

    2001-02-01

    Full Text Available Vinte e quatro caprinos de uma semana de idade, soronegativos pela imunodifusão em gel de agar para artrite encefalite caprina (AEC, foram utilizados para estudo de infecção experimental pelo vírus da AEC. Dezesseis animais foram inoculados com lentivirus caprino, amostra Cork, oito pela via intravenosa e oito por instilação nasal. Oito animais serviram como controle, inoculados pelas vias intranasal ou intravenosa com 1ml de meio de cultura de células não infectadas. Os animais foram sacrificados aos 2, 6, 12 e 20 dias pós-inoculação (PI, e colhidas amostras do sistema nervoso central, articulações, tonsilas, linfonodos, pulmões, rins, timo, baço e intestinos delgado e grosso para histopatologia e imunoistoquímica. Um animal inoculado com o vírus da AEC pela via intranasal e sacrificado aos 20 dias PI apresentou imunomarcação positiva em um macrófago alveolar. Concluiu-se que a via aerógena é uma provável rota de infecção pelo vírus da AEC.The caprine arthritis encephalitis virus (CAEV experimental infection was studied in 24 one-week-old seronegative kids. Sixteen kids were inoculated with CAEV-Cork, with 10(6 TCID50/ml concentration, being eight inoculated intravenously, and eight intranasally. Eight animals were used as controls, being four inoculated intravenously, and four intranasally with non-infected cell culture medium. Since the day of the inoculation, clinical evaluation was performed daily, until the day of the sacrifice. Blood samples were taken for serological tests. The animals were killed in pairs at 2, 6, 12 and 20 days post-inoculation (PI and tissues samples of central nervous system, joints, tonsils, lymphonodes, lungs, kidneys, thymus, spleen, small and large intestine were collected for histopathological and immunohistochemical studies. One animal CAEV inoculated intranasally and killed at 20 days PI showed immunohistochemical positive reaction in an alveolar macrophage. It was concluded that

  2. Vulvovaginites em mulheres infectadas pelo vírus da imunodeficiência humana Vaginal infections in human immunodeficiency virus-infected women

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    Paula Matos Oliveira

    2008-03-01

    Full Text Available OBJETIVO: comparar a freqüência de vulvovaginites em mulheres infectadas pelo vírus da imunodeficiência humana (HIV com mulheres não infectadas. MÉTODOS: estudo de corte transversal com 64 mulheres infectadas pelo HIV e 76 não infectadas. Foram calculadas as freqüências de vaginose bacteriana, candidíase e tricomoníase, que foram diagnosticadas por critérios de Amsel, cultura e exame a fresco, respectivamente. Para análise dos dados, utilizaram-se o teste do c2, teste exato de Fisher e regressão múltipla para verificar a independência das associações. RESULTADOS: a infecção vaginal foi mais prevalente em pacientes infectadas pelo HIV quando comparadas ao Grupo Controle (59,4 versus 28,9%, pPURPOSE: to compare the frequency of vulvovaginitis in women infected with human imunnodeficiency virus (HIV with the frequency in non-infected women. METHODS: a transversal study including 64 HIV infected women and 76 non-infected ones. The frequencies of bacterial vaginosis, candidiasis and trichomoniasis, diagnosed by Amsel's criteria, culture and fresh exam, respectively, were calculated. Chi-square test, Fisher's exact test and multiple regressions to verify the independence of associations were used to analyze the data. RESULTS: the vaginal infection was more prevalent in HIV infected patients, as compared to the control group (59.4 versus 28.9%, p<0,001; Odds Ratio=2.7, IC95%=1.33-5.83, p=0.007. Bacterial vaginosis occurred in 26.6% of the positive-HIV women; vaginal candidiasis, in 29.7% and trichomoniasis, in 12.5% of them. All the infections were significantly more frequent in the group of HIV infected women (p=0.04, 0.02 e 0.04, respectively. CONCLUSIONS: vulvovaginitis is more frequent in HIV infected women.

  3. Atividade isoenzimática em plantas de trigo infectadas com o vírus SBWMV Isoenzymatic activity in wheat plants infected by virus SBWMV

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    Rocheli de Souza

    2005-09-01

    Full Text Available O objetivo deste trabalho foi elucidar a atividade e a expressão isoenzimática das esterases, das peroxidases e das aspartato aminotransferases em função da infecção de plantas de trigo pelo Soil-borne wheat mosaic virus (SBWMV. Foram analisadas, aos 45 dias após a emergência, quatro cultivares e uma linhagem de trigo, com diferentes níveis de resistência ao SBWMV: BRS Guabiju, BRS 194, BRS 179, BR 23 e PF 980524. De modo geral, ocorreram diferenças qualitativas e quantitativas intra e interpopulacional, quando comparadas plantas assintomáticas e sintomáticas ao SBWMV. Para o sistema esterase, nove padrões de bandas foram determinados e para peroxidase e aspartato aminotransferase foram detectados três padrões de bandas, para ambas as condições. Padrões eletroforéticos foram observados para plantas infectadas, quando comparadas com as não infectadas, destacando-se a atividade da esterase, o que permitiu identificar com maior precisão o estado metabólico e diferenciado das células.The aim of this work was to elucidate the effect of the Soil-borne wheat mosaic virus (SBWMV on the activity and on the isoenzymatic expression of esterases, peroxidases, and aspartate aminotranferases in wheat plants. Biochemical analyses were carried out for four cultivars and one line of wheat, 45 days after emergence with different levels of resistance to SBWMV: BRS Guabiju, BRS 194, BRS 179, BR 23 and PF 980524. In general, intra and interpopulation differences in quality and quantity were detected, when comparing plants with and without symptoms of SBWMV. Nine band patterns were determined in both situations for esterase. To peroxidase and aspartato aminotransferase, three band patterns were detected for both conditions. Eletrophoretic patterns of SBWMV infected plants were observed, when compared with noninfected ones, notably for esterase, which provides a more precise identification of cell metabolic condition.

  4. The Incidence, Severity and Occurrence of Four Viruses Infecting Pepper (Capsicum spp. in the Southern Guinea Savannah Agro-ecological Zone of Nigeria

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    Taiye Hussein Aliyu

    2015-01-01

    Full Text Available The incidence, severity and occurrence of four viruses infecting pepper were determined in Kwara State, Nigeria. A disease survey and antigen-coated plate enzyme-linked immunosorbent assay (ACP-ELISA were the tools deployed to achieve these objectives. The survey indicated the highest virus incidence (97% in four locations, and the lowest incidence (16% in three locations, with variations in severity scores. Th e ELISA result indicated the occurrence of all four viruses with the highest percentage occurrence of virus in the samples as follows: Pepper veinal mottle virus (36.3%, Blackeye cowpea mosaic virus (16.2%, Cowpea aphid borne mosaic virus (7.4%, and Cucumber mosaic virus in the locations (4.8%. The results indicate the prevalence of these viruses on pepper in the Southern Guinea savannah agroecological zone and therefore the need for constant studies to detect other viruses that limit pepper production.

  5. ANATOMI DAUN GALUR-GALUR HARAPAN KEDELAI (GLYCINE MAX L. MERILL TAHAN CPMMV (COWPEA MILD MOTTLE VIRUS SEBAGAI SUMBER BELAJAR

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    Irwan Wijaya

    2016-03-01

    Full Text Available Learning source is the whole thing that can be used in the learning process includes person, environment, objects, messages, tools, and materials that used as information to assist in the learning process and the learning objectives. The aim of this study was to introduce the anatomical characteristics of the 10 CpMMV- resistance soybean lines derived from the soybean crosses that could be use as learning source. The research was conducted at Jambegede Research Station, Indonesian Legume and Tuber Crops Research Institute, Malang, and Laboratory of Genetics, State University of Malang  for observing the anatomy of soybean  leaf. Results showed that the existence of a difference in the average number of stomata and the number trichomes on the upper surface and lower surface leaf of soybean lines that could be use as source of learning. Sumber belajar merupakan segala sesuatu yang dapat digunakan dalam proses belajar meliputi orang, lingkungan, benda, pesan, alat, dan bahan yang dijadikan sebagai informasi untuk membantu dalam proses belajar dan mencapai tujuan pembelajaran. Tujuan penulisan ini untuk mengenalkan karakter anatomi 10 galur harapan kedelai tahan CpMMV dari hasil persilangan yang dapat dijadikan sumber belajar. Penelitian ini dilakukan di Kebun Percobaan Jambegede, Balai Penelitian Tanaman Aneka Kacang dan Umbi, Malang, dan Laboratorium Genetika Universitas Negeri Malang untuk pengamatan anatomi daun kedelai. Hasil penelitian menunjukkan adanya perbedaan rata-rata jumlah stomata dan jumlah trikoma pada permukaan atas dan permukaan bawah daun galur kedelai yang dapat dijadikan sumber belajar.

  6. How <em>Varroa> Parasitism Affects the Immunological and Nutritional Status of the Honey Bee, <em>Apis melliferaem>

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    Katherine A. Aronstein

    2012-06-01

    Full Text Available We investigated the effect of the parasitic mite <em>Varroa destructorem> on the immunological and nutritional condition of honey bees, <em>Apis melliferaem>, from the perspective of the individual bee and the colony. Pupae, newly-emerged adults and foraging adults were sampled from honey bee colonies at one site in S. Texas, USA. <em>Varroa>‑infested bees displayed elevated titer of Deformed Wing Virus (DWV, suggestive of depressed capacity to limit viral replication. Expression of genes coding three anti-microbial peptides (<em>defensin1, abaecin, hymenoptaecinem> was either not significantly different between <em>Varroa>-infested and uninfested bees or was significantly elevated in <em>Varroa>-infested bees, varying with sampling date and bee developmental age. The effect of <em>Varroa> on nutritional indices of the bees was complex, with protein, triglyceride, glycogen and sugar levels strongly influenced by life-stage of the bee and individual colony. Protein content was depressed and free amino acid content elevated in <em>Varroa>-infested pupae, suggesting that protein synthesis, and consequently growth, may be limited in these insects. No simple relationship between the values of nutritional and immune-related indices was observed, and colony-scale effects were indicated by the reduced weight of pupae in colonies with high <em>Varroa> abundance, irrespective of whether the individual pupa bore <em>Varroa>.

  7. Intensive genetic assessment of the mating system and reproductive success in a semi-closed population of the mottled sculpin, Cottus bairdi

    Science.gov (United States)

    Anthony C. Fiumera; Brady A. Porter; Gary D. Grossman; John C. Avise

    2002-01-01

    Most genetic surveys of parentage in nature sample only a small fraction of the breeding population. Here we apply micro satellite markers to deduce the genetic mating system and assess the reproductive success of females and males in an extensively collected, semiclosed stream population of the mottled sculpin fish, Cottus bairdi. In this species,...

  8. Biofortified red mottled beans (Phaseolus vulgaris L. in a maize and bean diet provide more bioavailable iron than standard red mottled beans: Studies in poultry (Gallus gallus and an in vitro digestion/Caco-2 model

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    Glahn Raymond P

    2011-10-01

    Full Text Available Abstract Background Our objective was to compare the capacities of biofortified and standard colored beans to deliver iron (Fe for hemoglobin synthesis. Two isolines of large-seeded, red mottled Andean beans (Phaseolus vulgaris L., one standard ("Low Fe" and the other biofortified ("High Fe" in Fe (49 and 71 μg Fe/g, respectively were used. This commercial class of red mottled beans is the preferred varietal type for most of the Caribbean and Eastern and Southern Africa where almost three quarters of a million hectares are grown. Therefore it is important to know the affect of biofortification of these beans on diets that simulate human feeding studies. Methods Maize-based diets containing the beans were formulated to meet the nutrient requirements for broiler except for Fe (Fe concentrations in the 2 diets were 42.9 ± 1.2 and 54.6 ± 0.9 mg/kg. One day old chicks (Gallus gallus were allocated to the experimental diets (n = 12. For 4 wk, hemoglobin, feed-consumption and body-weights were measured. Results Hemoglobin maintenance efficiencies (HME (means ± SEM were different between groups on days 14 and 21 of the experiment (P In-vitro analysis showed lower iron bioavailability in cells exposed to standard ("Low Fe" bean based diet. Conclusions We conclude that the in-vivo results support the in-vitro observations; biofortified colored beans contain more bioavailable-iron than standard colored beans. In addition, biofortified beans seems to be a promising vehicle for increasing intakes of bioavailable Fe in human populations that consume these beans as a dietary staple. This justifies further work on the large-seeded Andean beans which are the staple of a large-region of Africa where iron-deficiency anemia is a primary cause of infant death and poor health status.

  9. Ocorrência de vírus esférico causando faixa amarela das nervuras da couve em São Paulo Occurrence of yellow vein banding of cole induced by a spherical virus

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    E. W. Kitajima

    1965-01-01

    Full Text Available Partículas esferoidais de 50-60mμ de diâmetro foram encontradas em preparações semipurificadas e em preparações rápidas de plantas de couve infetadas com um vírus que induz faixa amarela das nervuras (VFANC. Essas partículas têm um capsídeo aparentemente icosaedral, constituído de 92 capsômeros de 50-60 A de diâmetro. Quando tratadas com acetato de uranila, revelaram a existência de uma zona central, que se impregna fortemente com êste corante, possìvelmente constituída de nucleoproteína. Tais partículas não foram encontradas em plantas sadias, mas foram nelas detectadas, após serem inoculadas por união de tecidos, por meios mecânicos ou por afídeos com VFANC. Partículas similares foram encontradas em secções ultra-finas de tecido foliar de couve infetado com o VFANC, porém apresentavam um diâmetro ligeiramente menor, da ordem de 35-45mμ. Invariàvelmente, essas partículas foram encontradas em meio às inclusões citoplasmáticas de forma e dimensões variadas, constituídas de uma massa amorfa, granular e densa. Tais inclusões puderam também ser observadas em secções mais espêssas e montadas para microscopia óptica. Possìvelmente o VFANC pertence ao grupo do vírus do mosaico da couve-flôr, dada a semelhança na morfologia das partículas e nas moléstias induzidas.Spherical particles, 50-60 mμ, in diameter were found in partially purified preparalions, and also in quick preparations made from plants infected with a virus inducing yellow vein banding in cole (Brassica oleracea var. acephala . These particles apparently had an icosahedral capsid composed by 92 capsomeres, each with 50-60 A in diameter. Uranyl acetate treatment of these particles revealed a central zone, about 25-30 mμ in diameter, which bound strongly with the stain, indicating that this part of the particle is nucleoprotein. Such particles were absent in healthy plants, but they were detected after these plants were inoculated by

  10. Biologia de aphis gossypii em plantas infectadas pelo vírus do mosaico das nervuras do algodoeiro Biology Of cotton aphid on plants infected by cotton vein mosaic virus

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    Marcos Doniseti Michelotto

    2009-01-01

    Full Text Available O objetivo deste trabalho foi avaliar a biologia do pulgão-do-algodoeiro, Aphis gossypii Glover (Hemiptera: Aphididae, em plantas de algodoeiro (Gossypium hirsutum L. sadias e infectadas com o vírus causador do mosaico das nervuras. O experimento foi realizado em câmara climatizada mantida a 25±1 ºC, umidade relativa de 70±10% e fotofase de 12 horas. Os dois tratamentos corresponderam a pulgões que se alimentaram de plantas sadias e infectadas com o vírus. As unidades experimentais consistiram de placas de Petri contendo ágar-água a 1% solidificado e um disco foliar de plantas sadias ou infectadas, com 30 repetições cada uma. Os pulgões que se alimentaram de plantas infectadas tiveram menor duração da fase ninfal (4,5 dias em relação àqueles que se alimentaram de plantas sadias (4,9 dias. Os períodos pré-reprodutivo, reprodutivo e pós-reprodutivo e a longevidade não foram influenciados pelo vírus. A maior mortalidade também foi observada em pulgões alimentados com plantas infectadas. O tempo decorrido entre gerações (T e o tempo necessário para duplicar em número (TD foram menores para pulgões que se alimentaram de plantas infectadas (9,74 e 1,66 dias respectivamente, as quais também acarretaram maior mortalidade ninfal. A taxa líquida de reprodução (Ro, a capacidade inata de aumentar em número (r m e a razão finita de aumento (λ foram favoráveis aos pulgões que se alimentaram de folhas de algodoeiro infectadas. Conclui-se que os pulgões mantidos em folhas de algodoeiro sadias atingiram melhores índices de desenvolvimento enquanto na reprodução os melhores índices são observados em pulgões mantidos em folhas infectadas.The objective of this work was to study the biology of cotton aphid, Aphis gossypii Glover (Hemiptera: Aphididae on cotton plants (Gossypium hirsutum L. healthy and infected by cotton vein mosaic virus. The assay was performed in climatic chambers at 25±1ºC, under relative humidity

  11. Ebola Virus and Marburg Virus

    Science.gov (United States)

    Diseases and Conditions Ebola virus and Marburg virus By Mayo Clinic Staff Ebola virus and Marburg virus are related viruses that cause hemorrhagic ... Africa, where sporadic outbreaks have occurred for decades. Ebola virus and Marburg virus live in animal hosts, ...

  12. Ebola Virus and Marburg Virus

    Science.gov (United States)

    Ebola virus and Marburg virus Overview By Mayo Clinic Staff Ebola virus and Marburg virus are related viruses that ... Africa, where sporadic outbreaks have occurred for decades. Ebola virus and Marburg virus live in animal hosts, ...

  13. Detecção de Citomegalovírus Humano e Herpesvírus Simples tipo 2 em amostras cervicais Detection of Human Cytomegalovirus and Herpes Simplex Virus type 2 in cervical sample

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    Danielle Albuquerque Pires Rocha

    2012-11-01

    Full Text Available OBJETIVO: Testar a presença de DNA de Citomegalovírus Humano (HCMV e Herpesvírus Simples tipo 2 (HSV-2 em amostras cervicais de mulheres atendidas em um serviço de atenção primária à saúde no município de Coari, Amazonas, Brasil. MÉTODOS: Participaram deste estudo 361 mulheres sexualmente ativas, variando entre 18 e 78 anos, atendidas em Unidades Básicas de Saúde para exame ginecológico de rotina. As amostras cervicais foram coletadas por meio de escova endocervical. A detecção dos vírus deu-se por meio de Reação em Cadeia da Polimerase (PCR em tempo real. RESULTADOS: A média de idade das mulheres participantes foi de 36,4 anos (desvio-padrão (DP=13,4. Foi encontrado DNA de HCMV em amostras cervicais de 30 mulheres (8,3%; IC95% 5,8 - 11,8 e de HSV-2 em 2 mulheres (0,6%; IC95% 0,1 - 2,2. Duas mulheres relataram ser portadoras do HIV, estando uma delas infectada com o HCMV. Não foram encontradas associações estatisticamente significativas entre a infecção pelos patógenos estudados e as variáveis socioeconômicas, clínicas e comportamentais. CONCLUSÕES: A prevalência de infecção pelo HCMV encontrada na amostra estudada chama a atenção para a necessidade do rastreio desse vírus na gestação e da vigilância nos pacientes imunocomprometidos. A baixa prevalência do HSV-2 deve-se provavelmente ao fato de a amostra cervical não ser adequada para este tipo de estudo por causa das características da biologia viral relacionadas à neurolatência.PURPOSE: To detect the presence of Human Cytomegalovirus (HCMV and Herpes Simplex Virus type 2 (HSV-2 DNA in cervical samples from women assisted in a primary health care clinic in the city of Coari, Amazonas, Brazil. METHODS: Participated in this study 361 sexually active women between 18 and 78 years. They were been assisted in a Basic Health Care Clinic for routine gynecological exam. The cervical samples were collected using endocervical brush. The viruses were detected

  14. Soroprevalência do vírus de hepatite B em anestesiologistas Soroprevalecimiento del virus de la hepatitis B en anestesiologistas Serum prevalence of hepatitis B virus in anesthesiologists

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    Antônio Fernando Carneiro

    2003-09-01

    Full Text Available JUSTIFICATIVA E OBJETIVOS: Os anestesiologistas estão particularmente expostos ao contato com sangue e secreções. A infecção pelo vírus da hepatite B constitui o maior risco ocupacional para os profissionais da área da saúde. O objetivo deste estudo foi avaliar a soroprevalência do Ag-HBs, anti-HBs e anti-HBc, assim como a situação vacinal dos anestesiologistas da cidade de Goiânia. MÉTODO: Participaram da pesquisa 90 dos 200 anestesiologistas da cidade de Goiânia. As amostras foram colhidas pelo autor. Foram retirados 10 ml de sangue de uma veia periférica, identificadas no momento da coleta. O material foi analisado nas primeiras 24 horas, sob condições ideais de conservação. Realizou-se, através do ensaio imunoenzimático, a detecção dos seguintes marcadores: anti-HBc, anti-HBs e Ag-HBs. Os participantes da pesquisa foram pessoalmente contatados pelo autor, e consentiram por escrito com a realização do estudo. Assegurado sigilo absoluto, tanto dos resultados, como das informações contidas em questionário aplicado. RESULTADOS: Os dados analisados mostraram que 65/90 (72,2% foram reagentes para o anti-HBs e 25/90 (27,8% não reagentes. Quanto ao anti-HBc, 76/10 (90,5% foram não reagentes e 09/90 (10% mostraram-se reagentes. Nenhum dos participantes mostrou positividade para Ag-HBs. CONCLUSÕES: Este estudo mostrou uma soroprevalência para o anti-HBs de 72,2% (65/90. A prevalência da infecção pelo vírus B entre os anestesiologistas foi de 8,9% representados pelo 8 anti-HBc + / anti-HBs +. Com base nos resultados, campanhas de vacinação e implantação de medidas profiláticas devem ser intensificadas.JUSTIFICATIVA Y OBJETIVOS: Los anestesiologistas están particularmente expuestos al contacto con sangre y secreciones. La infección por el virus de la hepatitis B constituye el mayor riesgo ocupacional para los profesionales de la área de la salud. El objetivo de este estudio fue evaluar el soroprevalecimiento

  15. Concentración nutrimental en hojas de aguacate 'Hass' con síntoma de moteado Nutrimental concentration in 'Hass' avocado leaves with mottled symptom

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    Edgardo Federico Hernández-Valdés

    2012-06-01

    Full Text Available El llamado "moteado de las hojas" en el cultivo de aguacate está ampliamente distribuido en las zonas de producción más importante de México, y se desconoce los factores involucrados en la aparición de este síntoma foliar. Por ello, se contrastó el contenido nutrimental en hojas de aguacate 'Hass' colectadas de árboles sin la presencia del moteado (tratamiento A, contra hojas que tampoco manifestaran el síntoma pero provenientes de árboles con el daño foliar (tratamiento B y hojas con la presencia del síntoma (Tratamiento C. Se encontró que, aquellas hojas con "moteados" intervenales tuvieron menor concentración de N, P, K, y Mn, respecto a las que no presentaron el síntoma, mientras que las concentraciones de Ca, Mg, Fe, Zn, Cu y B hojas con y sin moteado fueron similares.The problem called as "mottled leaves" in avocado crop is widely spread in the most important production zones from Mexico, and it is unknown which factors are involved in this foliar symptom appearance. By this reason, the nutrimental content in 'Hass' avocado foils collected from trees without mottled presence (treatment A was collated against leaves that either showed the symptom although coming from trees with foliar damage (treatment b and leaves with symptom presence (Treatment C. It was found that those leaves with interveinal "mottled" had least N, P, K, and Mn concentration with regards the ones that show no symptom, while Ca, Mg, Fe, Zn, Cu and B concentrations in leaves with and without mottling were similar.

  16. Anticorpos contra vírus em galinhas de terreiro do Estado do Rio Grande do Sul, Brasil Antibodies against avian viruses in backyard poultry from the Rio Grande do Sul State, Brazil

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    Helton Fernandes dos Santos

    2008-10-01

    Full Text Available No Brasil, a população de aves conhecida como galinhas de terreiro encontra-se fora do sistema de biosseguridade aplicada às criações comerciais. Para investigar a presença de anticorpos contra alguns vírus específicos nesta população, foram coletadas amostras de sangue de 867 aves não-vacinadas em 60 propriedades de 22 municípios do Estado do Rio Grande do Sul, Brasil. O soro foi testado para a presença de anticorpos contra o vírus da bronquite infecciosa das galinhas (IBV, reovírus aviário (ARV e o vírus da doença infecciosa da bolsa (IBDV pela técnica de soroneutralização. Anticorpos contra IBV foram detectados em 65% (564/867 das amostras, contra ARV em 21,6% (187/867 e contra IBDV em 80,2% (695/867 das aves. Todas as propriedades avaliadas apresentavam uma ave positiva para anticorpos contra IBV e IBDV e 88,3% delas eram positivas para ARV. Os resultados demonstram que esses vírus estão presentes em galinhas de terreiro nas criações avícolas não-industriais da região central do Estado. Os resultados indicam a necessidade de um programa de vigilância permanente nessa população e ainda indicam a necessidade de avaliar o impacto destas infecções nos próprios plantéis e o risco associado à transmissão destas às criações comerciais.The backyard poultry are not included in the biosecurity system applied in commercial flocks in Brazil. To investigate the presence of antibodies to specific viral pathogens in this population, blood samples were collected from 867 non-vaccinated birds, from 60 flocks in 22 counties of the Rio Grande do Sul State, Brazil. The samples were tested to detect antibodies against infectious bronchitis virus (IBV, avian reovirus (ARV and infectious bursal disease virus (IBDV, through the virus neutralization test. Antibodies to IBV were detected in 65% (564/867, against ARV in 21.6% (187/867, and against IBDV in 80.2% (695/867 of the samples. All the flocks had chickens positive to IBV

  17. Antibodies against pseudorabies virus in feral swine in southeast Brazil Anticorpos contra o vírus da doença de Aujeszky em javalis no estado de São Paulo

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    E.M.S. Cunha

    2006-08-01

    Full Text Available Serum samples collected from 358 wild boars (Sus scrofa in breeding farms in São Paulo, southeast Brazil, from 1998 to 2001, were tested for antibodies against pseudorabies virus (PRV by means of serum neutralization (SN and enzyme-linked immunobsorbent assay (ELISA. Seropositive animals were detected in three of seven herds analyzed. Overall seroprevalence as assessed by SN was 30.7%, ranging from 25.2% to 100% for the herds that presented seropositive animals. Indirect ELISA detected lower seroprevalence (19.3%. Sensitivity and specificity of ELISA were equal to 57.3% and 97.6%, respectively. Agreement was equal to 85.2% (PSoros de 358 javalis (Sus scrofa, criados em sistema de semiconfinamento em propriedades do estado de São Paulo, foram coletados entre 1998 e 2000 e testados para anticorpos contra o vírus da doença de Aujeszky (VDA, pela técnica de soroneutralização (SN e ensaio imunoenzimático (ELISA. Foram detectados animais soropositivos em três das sete propriedades analisadas. Do total de javalis testados, 30,7% apresentaram anticorpos neutralizantes contra o VDA, com variação de 25,2% a 100% nas propriedades com animais sororreagentes. O ELISA detectou menor número de sororeagentes (19,3%, sendo a sensibilidade e a especificidade 57,3% e 97,6%, respectivamente, e a correlação observada de 85,2% (P<0,0001. Os resultados mostram que a infecção pelo vírus da doença de Aujeszky ocorre em criações de javalis no estado de São Paulo, e compromete o sucesso de um futuro programa de erradicação da doença na região.

  18. Genetic Compositions of Broad bean wilt virus 2 Infecting Red Pepper in Korea

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    Hae-Ryun Kwak

    2013-09-01

    Full Text Available The incidence of Broad bean wilt virus 2 (BBWV2 on red pepper was investigated using the samples obtained from 24 areas of 8 provinces in Korea. Two hundred and five samples (79% out of 260 collected samples were found to be infected with BBWV2. While the single infection rate of BBWV2 was 21.5%, the co-infection rate of BBWV2 with Cucumber mosaic virus, Pepper mottle virus, Pepper mild mottle virus and/or Potato virus Y was 78.5%. To characterize the genetic diversity of BBWV2 Korean isolates, 7 isolates were fully sequenced and analyzed. Phylogenetic analyses revealed that BBWV2 isolates could be divided largely into two groups as Group I and Group II. Based on the partial sequence analyses, 153 selected BBWV2 isolates were subgrouped into GS-I (21.6%, GS-II (3.9% and GS-III (56.9%. BBWV2 GS-III, which was predominant in Korea, appears to be a new combination between Group I RNA-1 and Group II RNA-2. Viral disease incidence of BBWV2 on red pepper was under 2% before 2004. However, the incidence was increased abruptly to 41.3% in 2005, 58.2% in 2006 and 79% in 2007. These rapid increases might be related with the emergence of new combinations between BBWV2 groups.

  19. Bovine herpesvirus 5 detection by virus isolation in cell culture and multiplex-PCR in central nervous system from cattle with neurological disease in Brazilian herds Detecção do herpesvírus bovino 5 por isolamento viral e multiplex-PCR em SNC de bovinos com doença neurológica em rebanhos brasileiros

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    Marlise Pompeo Claus

    2007-09-01

    Full Text Available Bovine herpesvirus 5 (BoHV-5 is an important cause of meningoencephalitis in young and adult cattle. The multiple etiology of neurological disturbances in cattle makes the quick and conclusive diagnosis of BoHV-5 infection important for animal and public health, mainly because of herbivore rabies that is endemic in Brazilian cattle herds. The objective of this retrospective study was to use a multiplex-polymerase chain reaction (multiplex-PCR for BoHV-5 and BoHV-1 glycoprotein C gene detection from stored central nervous system (CNS tissue fragments of cattle with neurological clinical signs. Forty-seven frozen CNS samples of young and adult cattle from 31 herds in three Brazilian geographical regions (South, Southeast, and Center-west were evaluated. Eighteen (38.3% of these CNS samples were BoHV-positive by virus isolation in cell culture. By multiplex-PCR 30 (63.8% CNS samples were BoHV-5 positive. All 18 positive samples by virus isolation were confirmed as BoHV-5 by the multiplex-PCR, that provided a increase of 25.5% (12/47 in the BoHV-5 diagnosis rate. BoHV-1 was not detected in any CNS sample. This retrospective study demonstrated the wide regional distribution of BoHV-5 infection in Brazilian cattle herds since positive results were obtained in CNS samples of cattle with neurological disease from Paraná, São Paulo, Minas Gerais, Mato Grosso, and Mato Grosso do Sul States.O herpesvírus bovino 5 (BoHV-5 é um importante agente etiológico de meningoencefalite em bovinos jovens e adultos. A etiologia múltipla dos distúrbios neurológicos em bovinos torna o diagnóstico conclusivo do BoHV-5 importante tanto em termos de sanidade animal quanto de saúde pública, principalmente pela característica endêmica da raiva dos herbívoros nos rebanhos bovinos brasileiros. O objetivo desse estudo retrospectivo foi utilizar a reação em cadeia da polimerase (multiplex-PCR para a detecção do gene da glicoproteína C do BoHV-5 e do BoHV-1 em

  20. Application of sequence-independent amplification (SIA) for the identification of RNA viruses in bioenergy crops.

    Science.gov (United States)

    Agindotan, Bright O; Ahonsi, Monday O; Domier, Leslie L; Gray, Michael E; Bradley, Carl A

    2010-10-01

    Miscanthus x giganteus, energycane, and Panicum virgatum (switchgrass) are three potential biomass crops being evaluated for commercial cellulosic ethanol production. Viral diseases are potentially significant threats to these crops. Therefore, identification of viruses infecting these bioenergy crops is important for quarantine purposes, virus resistance breeding, and production of virus-free planting materials. The application is described of sequence-independent amplification, for the identification of RNA viruses in bioenergy crops. The method involves virus partial purification from a small amount of infected leaf tissue (miniprep), extraction of viral RNA, amplification of randomly primed cDNAs, cloning, sequencing, and BLAST searches for sequence homology in the GenBank. This method has distinct advantage over other virus characterization techniques in that it does not require reagent specific to target viruses. Using this method, a possible new species was identified in the genus Marafivirus in switchgrass related to Maize rayado fino virus, its closest relative currently in GenBank. Sugarcane mosaic virus (SCMV), genus Potyvirus, was identified in M.xgiganteus, energycane, corn (Zea mays), and switchgrass. Other viruses identified were: Maize dwarf mosaic virus (MDMV), genus Potyvirus, in johnsongrass (Sorghum halepense); Soil borne wheat mosaic virus (SBWMV), genus Furovirus, in wheat (Triticum aestivum); and Bean pod mottle virus (BPMV), genus Comovirus, in soybean (Glycine max). The method was as sensitive as conventional RT-PCR. This is the first report of a Marafivirus infecting switchgrass, and SCMV infecting both energycane and M. x giganteus. Copyright (c) 2010 Elsevier B.V. All rights reserved.

  1. Incidencia y sintomatología de cinco virus en parcelas comerciales de chile seco en Aguascalientes, San Luis Potosí y Zacatecas, México Incidence and symptomatology of five viruses in commercial dry chili pepper fields in Aguascalientes, San Luis Potosí, and Zacatecas, Mexico

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    Rodolfo Velásquez-Valle

    2012-04-01

    Full Text Available A nivel mundial el cultivo de chile es afectado por más de 60 enfermedades virales; sin embargo, poco se conoce acerca de ellas en el área productora de chile seco del norte centro de México por lo que el objetivo del presente trabajo consistió en detectar la presencia y sintomatología de cinco virus en parcelas comerciales de chile seco en los estados mencionados. Plantas de chile de los tipos mirasol y ancho fueron muestreadas y se anotó la presencia de síntomas como enanismo, clorosis, deformación de hojas, defoliación, necrosis vascular y ramas unidas. Las muestras fueron analizadas mediante la técnica DAS-ELISA empleando los antisueros para el virus del mosaico del tabaco (Tobacco mosaic virus: TMV, mosaico del pepino (Cucumber mosaic virus: CMV, Y de la papa (Potato virus Y: PVY, moteado del chile (Pepper mottle virus: PepMoV y jaspeado del tabaco (Tobacco etch virus: TEV. Esos virus fueron identificados en plantas de chile colectadas en las parcelas comerciales de chile seco de los tres estados antes mencionados.World-wide the chili pepper crop is affected by more than 60 viral diseases, although very little is known about them in the area of dry pepper plantation in northern-central Mexico. Consequently, the aims of this work were to identify the presence of the virus and the associated symptoms in commercial dry pepper fields of the states of Zacatecas, San Luis Potosí, and Aguascalientes, Mexico. Mirasol and ancho pepper plants were sampled and the presence of symptoms such as dwarfing, chlorosis, leaf deformation, defoliation, vascular necrosis and joined branches, were recorded. Samples were analyzed using DAS-ELISA with the antisera of the tobacco mosaic virus (Tobacco mosaic virus: TMV, cucumber mosaic virus (Cucumber mosaic virus: CMV, potato virus Y (Potato virus Y: PVY, pepper mottle virus (Pepper mottle virus: PepMoV, and tobacco etch virus (Tobacco etch virus: TEV. These viruses were identified in pepper plants

  2. Molecular Identification of Chronic Bee Paralysis Virus Infection in Apis mellifera Colonies in Japan

    OpenAIRE

    Tomomi Morimoto; Yuriko Kojima; Mikio Yoshiyama; Kiyoshi Kimura; Bu Yang; Tatsuhiko Kadowaki

    2012-01-01

    Chronic bee paralysis virus (CBPV) infection causes chronic paralysis and loss of workers in honey bee colonies around the world. Although CBPV shows a worldwide distribution, it had not been molecularly detected in Japan. Our investigation of <em>Apis melliferaem> and <em>Apis cerana japonicaem> colonies with RT-PCR has revealed CBPV infection in <em>A. melliferaem> but not <em>A. c. japonicaem> colonies in Japan. The prevalence of CBPV...

  3. Comparison of the effects of chlorite-oxidized oxyamylose and polyacrylic acid on the multiplication of phytopathogenic viruses.

    Science.gov (United States)

    Kluge, S

    1985-10-01

    Polyacrylic acid (PAA) and chlorite-oxidized oxyamylose (COAM) inhibit the multiplication of tobacco mosaic virus (TMV) in leaf disks by up to 50%. The reduction in TMV content is time-dependent and decreases with longer time intervals between the virus infection and the application of substances. The multiplication of potato virus X (PVX) in leaf disks is not affected by either PAA or COAM. In intact plants PAA produces a strong antiviral effect on both PVX and red clover mottle virus (RCMV). The effect produced by COAM is much less pronounced, although this substance is less toxic and could be used in a higher concentration than PAA. Neither of these compounds has a significant influence on the development of virus-induced necroses in Nicotiana glutinosa, Gomphrena globosa or Phaseolus vulgaris plants when administered one day before or after virus infection.

  4. Soroprevalência e genótipos do vírus da hepatite C em pacientes com lúpus eritematoso sistêmico (LES em Goiânia, Brasil Hepatitis C virus seroprevalence and genotypes in patients with systemic lupus erythematosus (SLE in Goiânia, Brazil

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    Vitalina de Souza Barbosa

    2005-08-01

    Full Text Available A infecção pelo vírus da hepatite C (HCV desperta grande interesse em reumatologia por apresentar várias manifestações extra-hepáticas. Diversos estudos mostram associação elevada da infecção pelo HCV com manifestações reumáticas como dores musculares, crioglobulinemia mista, síndrome reumatóide, síndrome de Sjögren, vasculite, glomerulonefrite, fenômeno de Raynaud, poliarterite nodosa, miopatia, auto-anticorpos e outras manifestações de doença difusa do tecido conjuntivo. Em estudos anteriores realizados em nosso meio verificou-se a prevalência de 0,9% em gestantes, 1,4% em doadores de sangue, 1,8% em paciente com hanseníase e 2,0% em trabalhadores da área da saúde. OBJETIVO: determinar a prevalência da infecção pelo HCV em pacientes com lúpus eritematoso sistêmico (LES atendidos no Serviço de Reumatologia do Hospital das Clínicas da Faculdade de Medicina da Universidade Federal de Goiás (HC-FM-UFG. MÉTODOS: foram entrevistados 175 pacientes com LES e amostras sangüíneas coletadas. Inicialmente, pesquisou-se a presença de anticorpos para o HCV (anti-HCV. As amostras anti-HCV positivas foram submetidas à detecção do RNA viral, pela reação em cadeia da polimerase (PCR com primers complementares à região 5' não codificante do HCV. As amostras positivas foram genotipadas por line probe assay. RESULTADOS: a prevalência encontrada foi de 2,3% (4/175, e a identificação dos genótipos nas amostras RNA-HCV positivas revelou a presença do tipo 1 do HCV em três pacientes (75% e do tipo 3 em um paciente (25%. Das quatro pacientes infectadas, três apresentaram evolução clínica favorável e uma evoluiu para óbito em razão de insuficiência renal por nefrite lúpica. CONCLUSÕES: a prevalência de HCV em pacientes com LES revelou-se um pouco maior que a encontrada anteriomente em gestantes, doadores de sangue e em hansenianos, comparável à encontrada em trabalhadores da saúde.The hepatitis C virus

  5. O polietilenoglicol aumenta a penetração do vírus da diarréia viral bovina, do vírus da estomatite vesicular e do vírus sincicial respiratório bovino em células de cultivo Polyethylene glycol increases the penetration of bovine viral diarrhea virus, vesicular stomatitis virus and bovine respiratory syncytial virus in cultured cells

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    Renata Dezengrini

    2009-06-01

    Full Text Available A baixa eficiência de penetração de alguns vírus em células de cultivo pode representar uma dificuldade para o isolamento e a multiplicação viral in vitro. No presente estudo investigou-se o efeito do polietilenoglicol (PEG na replicação de sete vírus bovinos em células de linhagem de rim bovino (MDBK. A eficiência de penetração e replicação foi mensurada pela contagem do número de placas virais produzidas em tapetes celulares, após adsorção do inóculo viral (100 DICC50 mL-1 com ou sem a adição de PEG a 5% (peso molecular 6.000. A adição de PEG ao inóculo resultou em aumentos significativos do número de placas para o vírus da diarréia viral bovina (BVDV (aumento de 3,4 vezes, vírus da estomatite vesicular (VSV (2,2 vezes e vírus respiratório sincicial bovino (BRSV (1,5 vezes. A adição de PEG não produziu aumento significativo no número de placas dos herpesvírus bovinos 1, 2 e 5 (BoHV-1, BoHV-2 e BoHV-5. Por outro lado, o PEG produziu uma redução do número de placas (1,4 vezes produzidas pelo vírus da parainfluenza bovina (bPI-3V. A adição de PEG a 5% também aumentou a sensibilidade de detecção (entre 10 e 100 vezes do BVDV no soro de três bezerros persistentemente infectados. Para o BRSV, a adição de PEG aumentou em duas vezes a sensibilidade do isolamento viral de secreções nasais de duas ovelhas infectadas experimentalmente. Esses resultados demonstram que o PEG aumenta a eficiência de infecção do BVDV, VSV e BRSV em células de cultivo, podendo ser utilizado para aumentar a sensibilidade de detecção desses vírus em amostras clínicas (isolamento viral e/ou, para aumentar os títulos de vírus produzidos em cultivo celular.The low efficiency of penetration of some viruses in cultured cells may represent an obstacle for viral isolation and/or viral multiplication in tissue culture. This study investigated the effect of polyethylene glycol (PEG on the penetration and replication of seven

  6. Detection of the Hepatitis C virus in a population of adults Detección del virus de la Hepatitis C en una población de adultos Detecção do vírus da Hepatite C em uma população de adultos

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    Glauco Danielle Fagundes

    2008-06-01

    Full Text Available The objective of this study was to determine the prevalence of Hepatitis C virus (HCV in adults from Criciuma-SC and to search factors associated with the viral transmission. METHODS: During a health campaign, a questionnaire about factors associated to HCV transmission and tests to detect HCV were applied. A representative sample of the population was considered with 300 voluntaries. Fisher's Exact test, Mann-Whitney and Kappa tests were performed (p values El estudio tuvo como objetivo determinar la presencia del virus de la Hepatitis C (VHC en adultos de la ciudad de Criciúma-SC y buscar factores relacionados a la transmisión viral. MÉTODOS: en una campaña de salud sobre Hepatitis C fue aplicado un cuestionario sobre factores relacionados a la transmisión del VHC; se realizaron pruebas para detectar el virus. Se estableció, como muestra representativa, la participación de 300 individuos de la población. Fueron aplicadas los pruebas Exato de Fischer, Mann-Whitney y Kappa (con valores significativos de pO estudo objetivou determinar a prevalência de vírus da hepatite C (HCV em adultos de Criciúma, SC, e procurar fatores relacionados à transmissão viral. MÉTODOS: em uma campanha de saúde sobre hepatite C foi aplicado questionário sobre fatores relativos à transmissão de HVC e testes de detecção viral. Estabeleceu-se 300 participantes como amostra representativa da população. Foram aplicados os testes Exato de Fischer, Mann-Whitney e Kappa (significativos valores de p<0,05. RESULTADOS: hepatite C foi detectada em 7/457 participantes (1,53%. Indivíduos com HCV positivo tiveram média de 5,7 (+/-4,1 DP parceiros sexuais nos últimos 10 anos e esse valor foi significativamente mais elevado do que para aqueles com HCV negativo (média de 2 parceiros +/-2,5 DP (p=0,01. CONCLUSÃO: a soroprevalência de HCV em uma população voluntária de adultos de Criciúma, SC, foi elevada, havendo associação entre a presença de HCV e

  7. Ocorrência de viroses em tomate e pimentão na região serrana do estado do Espírito Santo Occurrence of viruses in tomato and sweetpepper in the highland region of the State of Espírito Santo, Brazil

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    Antonio C. de Ávila

    2004-09-01

    Full Text Available A região serrana do Espírito Santo, abrangendo os municípios de Vargem Alta, Venda Nova do Imigrante e Domingos Martins, é importante área produtora de hortaliças no Brasil. Um levantamento foi feito em outubro de 2003 visando verificar a ocorrência e a importância de viroses nas culturas de tomate e pimentão. Cento e trinta e cinco amostras foliares de tomate e pimentão apresentando sintomas semelhantes ao de infecção por vírus foram obtidas nos três municípios e analisadas por meio de sorologia e reação em plantas indicadoras. Os resultados mostraram que o Pepper yellow mosaic virus (PepYMV é o vírus prevalente ocorrendo como surto epidêmico em diferentes cultivares de tomate e híbridos suscetíveis de pimentão. O Tospovirus Groundnut ringspot virus e o Cucumovirus, Cucumber mosaic virus apresentaram ocorrência esporádica. Não foi detectada em nenhuma amostra a presença de Potato virus Y (PVY, tobamovírus ou outros tospovírus. Apesar da ocorrência da mosca branca na região, não foram observados sintomas típicos de infecção por begomovírus nas lavouras amostradas durante este levantamento.The highland area of the State of Espírito Santo is an important area for vegetable production comprising the counties of Vargem Alta, Venda Nova do Imigrante and Domingos Martins. A survey for viruses occurrence in the tomato and the sweetpepper crops was done in October, 2003. One hundred and thirty five leaf samples from tomato and sweetpepper showing virus-like symptoms were analyzed by serology and indicator hosts. Epidemics of Pepper Yellow mosaic virus, was observed in tomato and susceptible sweetpepper hybrids. Groundnut ring spot virus the only tospovirus species detected, and Cucumber mosaic virus was sporadically occurred. Potato virus Y, tobamoviruses and other tospoviruses were not detected in any of the analyzed leaf samples. Although high populations of the whitefly Bemisia argentifolii were present in tomato

  8. Molecular analysis of rubella virus in travelers suspected of measles infection in São Paulo, Brazil Análise molecular do vírus da rubéola em turistas suspeitos de infecção por sarampo em São Paulo, Brasil

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    Cristina A. Figueiredo

    2012-10-01

    Full Text Available OBJECTIVE: To identify measles virus genotypes in three cases of travelers suspected of measles infection. METHODS: Samples (blood and urine were collected for serology, virus isolation, and genotyping. Sera were analyzed for IgM antibodies against measles virus and rubella virus by enzyme-linked immunosorbent assay (ELISA (Siemens - Marburg, Germany. Clinical samples (lymphocytes and urine were inoculated into Statens Serum Institute rabbit corneal epithelial cell line- ATCC CL 60 (SIRC and Vero Slam cells. RNA was extracted from clinical samples and cell culture was inoculated and processed by polymerase chain reaction (PCR with oligonucleotides specific for measles virus (MV and rubella virus (RV. RESULTS: All patients showed IgM negative serology for MV and positive IgM for RV. RV belonging to genotypes 1B, 1C, and 1E were isolated from patients who came from Finland, Peru, and Germany, respectively. Genotype 1B has been found in Europe and on the East Coast of South America; 1C has been found in Peru and the West Coast of South America, and 1E, first identified in 1997, now appears to have worldwide distribution. CONCLUSION: Information about RV and MV genotypes circulating in São Paulo is essential for the control of measles, rubella, and congenital rubella syndrome (CRS in Brazil.OBJETIVO: Identificar o genótipo do vírus do sarampo em três viajantes suspeitos de infecção por sarampo. MÉTODOS: Amostras (sangue e urina foram coletadas para sorologia, isolamento viral e genotipagem. As sorologias para pesquisa de IgM para o vírus do sarampo e da rubéola foi realizada utilizando-se o kit de ELISA (Siemens - Marburg, Alemanha. As amostras clínicas (linfócito e urina foram inoculadas na SIRC (Statens Serum Institute rabbit corneal epithelial cell line-ATCC CL 60 e nas células Vero Slam. O RNA foi extraído das amostras clínicas e das células inoculadas e processadas por PCR, utilizando oligonucleotideos específicos para sarampo e

  9. Clinical patterns and seasonal trends in respiratory syncytial virus hospitalizations in São Paulo, Brazil Padrões clínicos e sazonalidade das hospitalizações causadas pelo vírus respiratório sincicial em São Paulo, Brasil

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    Sandra E. VIEIRA

    2001-06-01

    children admitted for severe respiratory diseases. Affected children were predominantly infants and boys presenting bronchiolitis and focal pneumonias. Similarly to what occurs in other subtropical regions, the virus outbreaks peak in the fall and their occurrence extends to the winter, which parallels an increase in hospital admissions due to respiratory diseases.Os vírus respiratórios são reconhecidos como os mais frequentes patógenos do trato respiratório inferior para lactentes e crianças de idade reduzida em países desenvolvidos, mas o conhecimento sobre este fato é menor nos países em desenvolvimento.Os autores realizaram um estudo prospectivo para avaliar a ocorrência, os padrões clínicos e a sazonalidade das infecções virais entre as crianças hospitalizadas com doença do trato respiratório inferior (grupo A. A presença de vírus respiratórios na nasofaringe das crianças foi avaliada à admissão em uma enfermaria de pediatria. A cultura celular e a imunofluorescência foram utilizadas para identificação viral. Exames complementares incluiram culturas de sangue e líquido pleural para detecção de bactérias. Dados clínicos e exames radiológicos foram anotados na admissão e durante o período de internação. Para avaliar adequadamente os resultados foi constituído um grupo sem doença respiratória para comparação. Com início em fevereiro de 1995, durante um período de 18 meses, 414 crianças foram incluídas - 239 no grupo A e 175 no grupo B. No grupo A, 111 crianças (46,4% tinham vírus enquanto somente 5 (2,9% apresentavam vírus no grupo B. O Vírus Respiratório Sincicial foi detectado em 100 crianças do grupo A (41,8%, o Adenovírus em 11 (4,6%, o vírus Influenza em 2 (0,8%, e o Parainfluenza em uma criança (0,4%. No grupo A as bactérias foram encontradas em 14 casos (5,8%. O Vírus Respiratório Sincicial estava associado a outro vírus ou bactéria em seis casos. Ocorreram dois surtos de Vírus Respiratório Sincicial

  10. Infecção pelo vírus da hepatite C em gestantes em Mato Grosso do Sul, 2005-2007 Infección por el virus de la hepatitis C en gestantes en Mato Grosso do Sul, Centro-Oeste de Brasil, 2005-2007 Hepatitis C virus infection among pregnant women in Central-Western Brazil, 2005-2007

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    Clarice Souza Pinto

    2011-10-01

    Full Text Available O estudo teve por objetivo estimar a prevalência da infecção e genótipo do vírus da hepatite C (HCV, bem como determinar a subnotificação de casos. O total de 115.386 gestantes atendidas pelo Programa Estadual de Proteção à Gestante de Mato Grosso do Sul foi submetido à coleta de sangue para a detecção de anti-HCV, de 2005 a 2007. A prevalência da infecção pelo HCV foi de 1,07 casos/1.000. As amostras positivas foram submetidas à detecção do HCV-RNA e genotipadas. O genótipo 1 foi encontrado em 73% das amostras, 24,3% pertenciam ao genótipo 3 e 2,7% ao genótipo 2. A subnotificação de casos de hepatite C foi de 35,5%.El estudio tuvo por objetivo estimar la prevalencia de la infección y genotipo del virus de la hepatitis C (HCV, así como determinar la subnotificación de casos. El total de 115.386 gestantes atendidas por el Programa Estatal de Protección a la Gestante de Mato Grosso do Sul (Centro-Oeste de Brasil fueron sometidas a la colecta de sangre para la detección de anti-HCV, de 2005 a 2007. La prevalencia de la infección por el HCV fue de 1,07 casos/1000. Las muestras positivas fueron sometidas a la detección del HCV-RNA y genotipadas. El genotipo 1 fue encontrado en 73% de las muestras, 24,3% pertenecían al genotipo 3 y 2,7% al genotipo 2. La subnotificación de casos de hepatitis C fue de 35,5%.The study was aimed at estimating the prevalence of infection with and the genotype of hepatitis C virus (HCV, and to determine the extent of underreporting of HCV cases. A total of 115,386 pregnant women seen by the Program for Protection of Pregnancy [Programa Estadual de Proteção à Gestante] of the state of Mato Grosso do Sul, Central-Western Brazil, were tested for anti-HCV antibodies between 2005 and 2007. Prevalence of HCV infection was 1.07 cases per thousand. Positive samples were tested for HCV RNA and genotyped. Genotype 1 was detected in 73% of samples, genotype 3 in 24.3%, and genotype 2 in 2

  11. O coração em portadores do vírus da hepatite C: avaliação Dopplerecocardiográfica Cardiac morphofunctional injuries in patients with hepatitis C virus: doppler echocardiographic evaluation

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    Carlos Tosta

    2006-11-01

    Full Text Available OBJETIVO: Avaliar possíveis alterações morfofuncionais cardíacas em portadores crônicos do vírus da hepatite C pela Dopplerecocardiografia. MÉTODOS: Estudo observacional caso-controle com análise de parâmetros Dopplerecocardiográficos de 31 pacientes portadores crônicos do vírus da hepatite C numa fase não avançada da doença, diagnosticados por biópsia (sem cirrose, carcinoma hepatocelular ou disfunção hepática e 20 casos-controle. RESULTADOS: Não houve diferenças estatisticamente significantes da espessura parietal, diâmetros cavitários, fração de ejeção, encurtamento circunferencial e nas velocidades de fluxo mitral e teciduais sistólica e diastólica do anel mitral entre os dois grupos estudados. CONCLUSÃO: Nas fases não avançadas, portadores do vírus da hepatite C não apresentaram alterações morfo-funcionais cardíacas, sob análise do ventrículo esquerdo.OBJECTIVE: To evaluate the possible morphological and functional heart injuries in hepatitis C virus patients. METHODS: Control-case study analyzing Doppler echocardiographic aspects in 31 hepatitis C virus patients and 20 controls. RESULTS: There were no significant difference in relation to the myocardial thickening, left ventricular diameters, circumferential shortening, ejection fraction, mitral valve flow velocities, tissue sistolic and diastolic mitral annular ones. CONCLUSION: Individuals with hepatitis C virus in the initial phases of the disease did not show morpho-functional abnormalities of the heart when evaluated by doppler echocardiography.

  12. Isolation and Identification of Virus dsRNA from Strawberry Plants

    Institute of Scientific and Technical Information of China (English)

    LI He; DAI Hong-yan; ZHANG Zhi-hong; GAO Xiu-yan; DU Guo-dong; ZHANG Xin-yu

    2007-01-01

    The analysis of virus genome is based on nucleic acid isolation. The aims of this study were to develop a method for isolation and identification of virus double-stranded ribonucleic acid (dsRNA) and to elucidate the nucleotide sequences of strawberry virus. Using the modified method, virus dsRNA was extracted from strawberry virus indicator plants and cultivated strawberry plants and detected using agarose gel electrophoresis with ethidium bromide staining and reverse transcription-polymerase chain reaction (RT-PCR). The quantity of virus dsRNA varied among strawberry cultivars. The quantity of dsRNA from in vitro plantlets was higher than that from the young leaves of field plants. For the field-grown plants, there was more dsRNA in the young leaves. Virus dsRNA extracted from strawberry plants was resistant to deoxyribonuclease Ⅰ (DNase Ⅰ ), but evidently, it became resistant to ribonuclease A (RNase A) only in the presence of 0.5 M NaCl. Its bands in agarose gel could be readily recycled using an agarose gel DNA purification kit. With RT-PCR, the segments of both strawberry mottle virus and Strawberry mild yellow edge virus genomes were amplified by using the virus dsRNA recycled from gel or treated with DNase Ⅰ /RNase A as templates. The system developed for dsRNA isolation and identification in strawberry plants laid a sound foundation for the work on genome analysis of strawberry virus isolates in China.

  13. Vírus dengue em larvas de Aedes aegypti e sua dinâmica de infestação, Roraima, Brasil Virus dengue en larvas de Aedes aegypti y su dinámica de infestación, Roraima, Brasil Dengue virus in Aedes aegypti larvae and infestation dynamics in Roraima, Brazil

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    Julianna Dias Zeidler

    2008-12-01

    Full Text Available OBJETIVO: Identificar a presença do vírus dengue em formas larvais de Aedes aegypti e relacionar a presença do vetor com índice pluviométrico e número de casos de dengue. MÉTODOS: Dezoito domicílios foram selecionados aleatoriamente para coleta de ovos em um bairro da cidade de Boa Vista (RR. Foram instaladas duas ovitrampas por domicílio e removidas após uma semana, mensalmente, de novembro de 2006 a maio de 2007. Foram calculados o índice de positividade de ovitrampa e o índice de densidade dos ovos. Após eclosão de 1.422 ovos coletados, foram formados 44 pools de no máximo 30 larvas para teste de presença do vírus dengue por meio de RT-PCR e hemi-nested PCR. O índice de incidência de dengue no período foi correlacionado com a precipitação pluvial. A associação entre essas variáveis e número de ovos coletados foi analisada pelo coeficiente de Pearson. RESULTADOS: Nenhum dos pools apresentou positividade para o vírus dengue, apesar do bairro ter apresentado elevados índices de incidência de dengue no período estudado. A densidade da população de Ae. aegypti aumentou conforme a pluviosidade, mas não apresentou correlação com índices de incidência de casos de dengue. CONCLUSÕES: Os resultados sugerem que a transmissão transovariana do vírus em mosquitos ocorre a uma freqüência muito baixa e por isso sua persistência em meio urbano pode não depender desse fenômeno. A população do mosquito aumentou no período de chuvas devido à formação de criadouros; a não-correlação com o índice de incidência de dengue deve-se à possibilidade desse dado ser subestimado em períodos de epidemia.OBJETIVO: Identificar la presencia del virus dengue en forma larvales de Aedes aegypti y relacionar la presencia del vector con índice pluviométrico y número de casos de dengue en el período estudiado. MÉTODOS: Dieciocho domicilios fueron seleccionados al azar para colectar huevos en una urbanización de la

  14. Three year seroepidemiological study of varicella-zoster virus in São Paulo, Brazil Três anos de estudo soroepidemiológico do vírus varicela-zoster em São Paulo, Brasil

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    Ana Lúcia Frugis YU

    2000-06-01

    Full Text Available A serosurvey of varicella has been carried out in children attending the public school network of São Paulo city, Brazil, from 1992 to 1994. This study was performed in order to establish the age related prevalence of antibodies against varicella-zoster virus (VZV and its age specific transmission dynamics pattern in these children. Among 2500 schools in the city of São Paulo public network, 304 were randomly selected; 7 children of a given age (ranging from 1 to 15 years were randomly selected in each school, and blood samples were obtained by fingerprick into filter paper. Blood eluates were analyzed for the presence of antibodies to VZV by ELISA. Proportion of seropositivity were calculated for each age group. Samples consisted of 1768 individuals in 1992, 1758 in 1993, and 1817 in 1994, resulting in 5343 eluates. A high proportion of seropositive children from 1 to 3 years of age was observed, ascending until 10 years of age and reaching a plateau around 90% afterwards. VZV transmission in this community was similar along the three years of the study. In children attending public schools in the city of São Paulo, contact with VZV occurs in early childhood. If immunization against VZV is considered it should be introduced as soon as possible.Um estudo sorológico para varicela foi realizado em crianças matriculadas na rede pública de ensino da cidade de São Paulo, Brasil, entre 1992 e 1994. O objetivo deste estudo foi determinar a soroprevalência idade-dependente de anticorpos contra o vírus varicela-zoster (VVZ e definir sua dinâmica de transmissão nestas crianças. Foram selecionadas, ao acaso, 304 escolas entre os 2500 equipamentos da Rede Pública de Educação e Bem Estar Social na cidade de São Paulo; foram sorteadas em cada escola 7 crianças de determinada idade (de 1 a 15 anos, e o sangue colhido em papel de filtro. Os eluatos foram avaliados para anticorpos contra o vírus varicela zoster através de técnica de ELISA. A

  15. Endothelin receptor B2 (EDNRB2 is responsible for the tyrosinase-independent recessive white (mo(w and mottled (mo plumage phenotypes in the chicken.

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    Keiji Kinoshita

    Full Text Available A mutation that confers white plumage with black eyes was identified in the Minohiki breed of Japanese native chicken (Gallus gallus domesticus. The white plumage, with a few partially pigmented feathers, was not associated with the tyrosinase gene, and displayed an autosomal recessive mode of inheritance against the pigmented phenotype. All F1 offspring derived from crosses with mottled chickens (mo/mo, which show characteristic pigmented feathers with white tips, had plumage with a mottled-like pattern. This result indicates that the white plumage mutation is a novel allele at the mo locus; we propose the gene symbol mo(w for this mutant allele. Furthermore, the F1 hybrid between the mo(w /mo(w chicken and the panda (s/s mutant of Japanese quail (Coturnix japonica, whose causative gene is the endothelin receptor B2 (EDNRB2 gene, showed a mo(w/mo(w chicken-like plumage, suggesting the possibility that the mutations in parental species are alleles of the same gene, EDNRB2. Nucleotide sequencing of the entire coding region of EDNRB2 revealed a non-synonymous G1008T substitution, which causes Cys244Phe amino acid substitution in exon 5 (which is part of the extracellular loop between the putative fourth and fifth transmembrane domains of EDNRB2 in the mutant chicken. This Cys244Phe mutation was also present in individuals of four Japanese breeds with white plumage. We also identified a non-synonymous substitution leading to Arg332His substitution that was responsible for the mottled (mo/mo plumage phenotype. These results suggest that the EDN3 (endothelin 3-EDNRB2 signaling is essential for normal pigmentation in birds, and that the mutations of EDNRB2 may cause defective binding of the protein with endothelins, which interferes with melanocyte differentiation, proliferation, and migration.

  16. Endothelin Receptor B2 (EDNRB2) Is Responsible for the Tyrosinase-Independent Recessive White (mow) and Mottled (mo) Plumage Phenotypes in the Chicken

    Science.gov (United States)

    Kinoshita, Keiji; Akiyama, Toyoko; Mizutani, Makoto; Shinomiya, Ai; Ishikawa, Akira; Younis, Hassan Hassan; Tsudzuki, Masaoki; Namikawa, Takao; Matsuda, Yoichi

    2014-01-01

    A mutation that confers white plumage with black eyes was identified in the Minohiki breed of Japanese native chicken (Gallus gallus domesticus). The white plumage, with a few partially pigmented feathers, was not associated with the tyrosinase gene, and displayed an autosomal recessive mode of inheritance against the pigmented phenotype. All F1 offspring derived from crosses with mottled chickens (mo/mo), which show characteristic pigmented feathers with white tips, had plumage with a mottled-like pattern. This result indicates that the white plumage mutation is a novel allele at the mo locus; we propose the gene symbol mow for this mutant allele. Furthermore, the F1 hybrid between the mow/mow chicken and the panda (s/s) mutant of Japanese quail (Coturnix japonica), whose causative gene is the endothelin receptor B2 (EDNRB2) gene, showed a mow/mow chicken-like plumage, suggesting the possibility that the mutations in parental species are alleles of the same gene, EDNRB2. Nucleotide sequencing of the entire coding region of EDNRB2 revealed a non-synonymous G1008T substitution, which causes Cys244Phe amino acid substitution in exon 5 (which is part of the extracellular loop between the putative fourth and fifth transmembrane domains of EDNRB2) in the mutant chicken. This Cys244Phe mutation was also present in individuals of four Japanese breeds with white plumage. We also identified a non-synonymous substitution leading to Arg332His substitution that was responsible for the mottled (mo/mo) plumage phenotype. These results suggest that the EDN3 (endothelin 3)–EDNRB2 signaling is essential for normal pigmentation in birds, and that the mutations of EDNRB2 may cause defective binding of the protein with endothelins, which interferes with melanocyte differentiation, proliferation, and migration. PMID:24466053

  17. Detecção do vírus herpes simples por reação em cadeia da polimerase em pacientes com ceratite herpética típica ou atípica Molecular detection of herpes simplex virus by polymerase chain reaction in patients with typical and atypical herpetic keratitis

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    Afonso Kamimura

    2008-12-01

    Full Text Available OBJETIVO: Avaliação dos pacientes com o quadro clínico de ceratite herpética (CH típicas e atípicas, pela reação em cadeia da polimerase (PCR correlacionando com o diagnóstico clínico. MÉTODOS: Foi realizada a PCR em 28 pacientes com ceratite herpética típica e atípica. RESULTADOS: A PCR foi positiva em 57,14% (n=16 do total (n=28. Nos casos de CH típica a positividade foi de 60,00% (n=12 em 20 casos. Para CH epitelial a positividade foi de 69,23% (n=9, sendo 77,78% (n=7 apenas para as lesões epiteliais dendríticas. Os casos de CH atípica apresentaram positividade de 50% (n=4 em oito casos. CONCLUSÃO: Quadro clínico típico de CH teve boa correlação com o resultado positivo observado na PCR. Entretanto, metade dos pacientes com o quadro de CH atípica apresentou PCR positivo, portanto, o exame do PCR é teste importante para o auxílio e diagnóstico da CH. No caso de CH estromal, foi demonstrado que a técnica da PCR conseguiu identificar o vírus HSV.PURPOSE: To evaluate patients with clinically typical and atypical herpetic keratitis (HK by means of polymerase chain reaction (PCR as compared with the clinical diagnosis. METHODS: PCR in 28 patients with clinical symptoms of typical and atypical HK was performed. RESULTS: PCR was positive in 57.14% (n=16 of the total cases (n=28. The test was positive in 60.0% (n=12 of the 20 typical HK cases. For epithelial HK, the test was positive in 69.23% (n=9, and 77.78% (n=7 only for dendritic injuries. Atypical HK presented a positive test in 50% (n=4 of eight cases. CONCLUSION: Clinical typical picture of HK had a good correlation with the positive result of PCR, mainly for epithelial injury of the dendritic type. However, 50% of the patients with atypical HK presented positive PCR. This result showed that PCR test can provide an effective HK diagnosis. In the stromal case of HK, PCR was a useful technique to identify HSV virus.

  18. Bovine respiratory syncytial virus: immunohistochemichal detection in mouse and bovine tissues using a Mab against human respiratory syncytial virus Vírus respiratório sincicial bovino: detecção por imunoistoquímica em tecidos de camundongos e bovinos usando AcM contra o vírus respiratório sincicial humano

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    R.S. Almeida

    2006-12-01

    Full Text Available An immunoistochemical (IHC test was developed to detect bovine respiratory syncytial virus (BRSV in cell cultures and tissues of experimentally infected mice and calves, using a commercial monoclonal antibody (Mab against human respiratory syncytial virus (HRSV, as a less expensive alternative, instead of producing specific monoclonal antibodies to BRSV. Clinical samples from calves suffering respiratory disease were also submitted to this test. IHC detected BRSV antigens in mouse tracheas (3, 5 and 7 days post-infection and lungs (5 and 7 days post-infection, and in one of three lungs from experimentally infected calves. Lungs samples from two naturally infected calves were tested and resulted positive for BRSV by the IHC test. These results suggest that this test may be used in the future for diagnosis as well as a useful tool to assess the distribution of BRSV infections in Brazilian herds.Desenvolveu-se um teste de imunohistoquímica (IHQ para detecção do vírus respiratório sincicial bovino (BRSV multiplicado em cultivo celular e em tecidos de camundongos e bezerros infectados experimentalmente, utilizando um anticorpo monoclonal comercial contra o vírus respiratório sincicial humano (HRSV, como uma alternativa para eliminar os custos de produção de anticorpos monoclonais específicos para o BRSV. Amostras clínicas de bezerros com sintomatologia respiratória foram analisadas. A técnica mostrou-se eficiente na detecção de antígenos do BRSV em traquéias (3, 5 e 7 dias pós-infecção e pulmões (5 e 7 dias pós-infecção dos camundongos infectados e em uma das três amostras de pulmões dos bezerros infectados experimentalmente. Amostras de pulmões de dois animais com infecção natural foram positivas para BRSV. Conclui-se que o teste de IHQ pode ser usado no diagnóstico das infecções por BRSV e na avaliação da distribuição dessas infecções nos rebanhos bovinos brasileiros.

  19. Reação de cultivares e eficiência do controle químico de pulgões vetores do Barley yellow dwarf virus em trigo Cultivars reaction and efficiency of chemical control of aphids vectors of Barley yellow dwarf virus in wheat

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    Mauro Tadeu Braga da Silva

    2004-10-01

    Full Text Available Foram conduzidos em Cruz Alta, RS, no ano agrícola de 2000, quatro experimentos, em condições de campo, para avaliar a reação de cultivares de trigo e a eficiência de inseticidas, quanto à incidência de pulgões transmissores do Barley yellow dwarf virus (BYDV e seus danos às plantas. A maioria dos pulgões coletados (75% foi Rhopalosiphum padi (Linnaeus. Outras três espécies de pulgões foram coletadas em número menor (25%. Apenas para a cultivar Fundacep 31, o teste de ELISA confirmou a presença dos vírus BYDV-PAV, BYDV-MAV e BYDV-SGV. As cultivares apresentaram respostas distintas, sendo agrupadas como resistentes (Fundacep 30, Fundacep 36 e Fundacep 37 e suscetível (Fundacep 31. Os inseticidas imidacloprida e tiametoxam na dosagem de 24,5g 100kg de sementes-1, aplicados nas sementes, foram eficazes no controle dos pulgões vetores de BYDV, superando a ação de três aplicações do clorpirifós na parte aérea. Dosagens a partir de 8,5g 100kg de sementes-1 de imidacloprida e tiametoxam evitaram perdas em produtividade de trigo causada pelo complexo pulgões-BYDV.Four experiments were carried out in Cruz Alta, Rio Grande do Sul State, Brazil, during the 2000 growing season, under field conditions, to evaluate the wheat cultivars reaction and efficiency of inseticides to reduce aphid vectors in the Barley yellow dwarf virus (BYDV incidence and damage. The majority of the aphids collected (75% was Rhopalosiphum padi (Linnaeus. Other three species of aphids were collected in lower numbers (25%. Only the Fundacep 31 cultivar showed positive reaction to sorological test ELISA, confirming the presence of BYDV-PAV, BYDV-MAV and BYDV-SGV viral species. Cultivars showed different responses, being classified as resistant (Fundacep 30, Fundacep 36 and Fundacep 37 and susceptible (Fundacep 31. Seed treatment with imidacloprid and thiamethoxam in the dosage of 24.5g 100kg of seed-1, were effective to control BYDV aphid vectors, and these

  20. Virus-encapsulated DNA origami nanostructures for cellular delivery.

    Science.gov (United States)

    Mikkilä, Joona; Eskelinen, Antti-Pekka; Niemelä, Elina H; Linko, Veikko; Frilander, Mikko J; Törmä, Päivi; Kostiainen, Mauri A

    2014-01-01

    DNA origami structures can be programmed into arbitrary shapes with nanometer scale precision, which opens up numerous attractive opportunities to engineer novel functional materials. One intriguing possibility is to use DNA origamis for fully tunable, targeted, and triggered drug delivery. In this work, we demonstrate the coating of DNA origami nanostructures with virus capsid proteins for enhancing cellular delivery. Our approach utilizes purified cowpea chlorotic mottle virus capsid proteins that can bind and self-assemble on the origami surface through electrostatic interactions and further pack the origami nanostructures inside the viral capsid. Confocal microscopy imaging and transfection studies with a human HEK293 cell line indicate that protein coating improves cellular attachment and delivery of origamis into the cells by 13-fold compared to bare DNA origamis. The presented method could readily find applications not only in sophisticated drug delivery applications but also in organizing intracellular reactions by origami-based templates.

  1. Yellowing disease in zucchini squash produced by mixed infections of Cucurbit yellow stunting disorder virus and Cucumber vein yellowing virus.

    Science.gov (United States)

    Gil-Salas, Francisco M; Peters, Jeff; Boonham, Neil; Cuadrado, Isabel M; Janssen, Dirk

    2011-11-01

    Zucchini squash is host to Cucurbit yellow stunting disorder virus (CYSDV), a member of the genus Crinivirus, and Cucumber vein yellowing virus (CVYV), a member of the genus Ipomovirus, both transmitted by the whitefly Bemisia tabaci. Field observations suggest the appearance of new symptoms observed on leaves of zucchini squash crops when both viruses were present. When infected during controlled experiments with CYSDV only, zucchini plants showed no obvious symptoms and the virus titer decreased between 15 and 45 days postinoculation (dpi), after which it was no longer detected. CVYV caused inconspicuous symptoms restricted to vein clearing on some of the apical leaves and the virus accumulated progressively between 15 and 60 dpi. Similar accumulations of virus followed single inoculations with the potyvirus Zucchini yellow mosaic virus (ZYMV) and plants showed severe stunting, leaf deformation, and mosaic yellowing. However, in mixed infections with CYSDV and CVYV, intermediate leaves showed chlorotic mottling which evolved later to rolling, brittleness, and complete yellowing of the leaf lamina, with exception of the veins. No consistent alteration of CVYV accumulation was detected but the amounts of CYSDV increased ≈100-fold and remained detectable at 60 dpi. Such synergistic effects on the titer of the crinivirus and symptom expression were not observed when co-infected with ZYMV.

  2. Identification of viruses infecting cucurbits and determination of genetic diversity of Cucumber mosaic virus in Lorestan province, Iran

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    Hasanvand Vahid

    2017-06-01

    Full Text Available Various viral pathogens infect Cucurbitaceae and cause economic losses. The aim of the present study was to detect plant viral pathogens including Cucumber mosaic virus (CMV, Cucumber green mottle mosaic virus (CGMMV, Zucchini yellow mosaic virus (ZYMV, Cucurbit yellow stunting disorder virus (CYSDV and Cucurbit chlorotic yellows virus (CCYV in Lorestan province, in western Iran, and also to determine CMV genetic diversity in Iranian populations. A total of 569 symptomatic leaf samples were collected in 2013 and 2014 from cucurbits growing regions in Lorestan province. The collected samples were assessed for viral diseases by ELISA. The results showed virus incidences in most regions. Then, the infection of 40 samples to CMV was confirmed by RT-PCR. Moreover, to distinguish between the two groups (I and II of CMV, PCR products were digested by two restriction enzymes XhoI and EcoRI. Results of the digestion showed that the isolates of Lorestan belonged to group I. The CMV-coat protein gene of eight isolates from different regions and hosts was sequenced and phylogenetic analysis was performed. Subsequent analyses showed even more genetic variation among Lorestan isolates. The phylogenetic tree revealed that Lorestan province isolates belonged to two IA and IB subgroups and could be classified together with East Azerbaijan province isolates. The results of the present study indicate a wide distribution of CMV, ZYMV, CGMMV, CYSDV and CCYV viruses in cucurbits fields of Lorestan province and for the first time subgroup IB of CMV was reported on melon from Iran.

  3. Resposta de plantas de alho livres de vírus ao nitrogênio em ambiente protegido Nitrogen fertilization in garlic free of virus cultivated in protected environment

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    Lucilene JC Fernandes

    2010-03-01

    Full Text Available A adubação nitrogenada associada ao uso de bulbos isentos de vírus contribui para o aumento de produtividade e qualidade do alho, fato que pode incentivar o produtor rural a investir na cultura, pois garante maior retorno econômico. O objetivo do trabalho foi avaliar o índice relativo de clorofila, estado nutricional, a produção total e comercial do alho livre de vírus e a correlação entre essas variáveis em função de doses de nitrogênio. O experimento foi instalado sob condições de ambiente protegido de maio a setembro de 2006, utilizando o delineamento em blocos casualizados, com seis repetições. Os tratamentos consistiram da aplicação em cobertura de doses crescentes de N (0, 20, 40, 80, 160 e 320 kg ha-1, utilizando como fonte o nitrato de amônio, na proporção de 25% da dose no estádio de 3 a 4 folhas, 25% antes da formação dos bulbilhos e 50% após a diferenciação. O aumento das doses de N resultou em maior índice relativo de clorofila, aumentou a absorção de N e reduziu absorção de P e K nas folhas, proporcionou maior produtividade total e comercial, sem que ocorresse pseudoperfilhamento.Nitrogen fertilization associated to the utilization of bulb free of virus enhances garlic yield and quality and it can incentive growers to invest in the crop whereas it allows a better economic return. The aim of this research was to evaluate the relative chlorophyll index (RCI, plant nutrition and total and commercial garlic yield and verify the correlation among these variables in relation to nitrogen fertilization. The experiment was carried out under greenhouse from May to September 2006. The experimental design consisted of randomized blocks with six replications. The treatments were application of crescent levels of nitrogen corresponding to 0, 20, 40, 80, 160, and 320 kg N ha-1. The N source was ammonium nitrate; 25% of the dose was applied when plants presented 3 or 4 leaves, 25% when plants presented 5 or 6

  4. Prevalence of antibodies against chicken anaemia virus (CAV in broiler breeders in Southern Brazil Prevalência de anticorpos contra o vírus da anemia das galinhas (CAV em matrizes de corte no Sul do Brasil

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    Cláudio W. Canal

    2004-06-01

    Full Text Available Chicks infected during the first two weeks of life with chicken anaemia virus (CAV manifest clinical disease that can be avoided if the breeder hens transfer enough antibodies to their progeny. The objective of the present work was to establish the prevalence and titer of anti-CAV antibodies in some Brazilian broiler hen breeder flocks and verify in which phase of life the birds were infected. A total of 1,709 serum samples from 12 broiler hen flocks vaccinated against CAV and 64 unvaccinated flocks were analyzed for CAV antibodies with an enzyme-linked immunosorbent assay (ELISA. All non-vaccinated breeder flocks were found to be infected with CAV, with 89% of the hens tested presenting antibodies, 52% of these with titers considered high enough to protect their progeny against CAV infection. Likewise, all vaccinated hens had antibody titer to CAV capable of conferring protection to their progeny. Thus, vaccination of hens seems capable of conferring protection to chicks against clinically apparent CAV-associated disease.A doença clínica causada pelo vírus da anemia das galinhas (CAV ocorre quando os pintos são infectados durante as primeiras duas semanas de vida e pode ser prevenida se as matrizes transferirem anticorpos suficientes para a sua progênie. Em vista disso, este estudo foi realizado visando determinar a prevalência de anticorpos contra o CAV em alguns lotes de matrizes pesadas no Brasil. Buscou-se ainda verificar em que fase da vida as reprodutoras seriam infectadas e quais seriam os títulos de anticorpos nessas aves. Um total de 1709 amostras de soro de 64 lotes de reprodutoras não vacinadas e 12 lotes de reprodutoras vacinadas contra o CAV foram analisados por ELISA. Todos os lotes de aves não vacinadas apresentaram anticorpos. Dentre esses, 89% dos indivíduos foram positivos, 52% com títulos de anticorpos capazes de conferir proteção a sua progênie contra o CAV. Igualmente, todos os lotes de matrizes vacinadas

  5. Inquérito soroepidemiológico para os vírus influenza em Belém, Pará, Brasil, 1992-1993 Seroepidemiological survey for influenza virus in Belém, Pará, Brazil, 1992-1993

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    Domingos Ezenildo Matos dos Santos

    1997-01-01

    Full Text Available Um estudo soroepidemiológico foi realizado para determinar a prevalência de anticorpos IH para os sorotipos de influenza circulantes entre pacientes atendidos no Laboratório de Virologia do IEC, em Belém, PA, Brasil, em 1992 e 1993. Um total de 179 (11% amostras de sangue foi coletado durante período pós-epidêmico e processado pelo teste da Inibição da Hemaglutinação para os vírus da influenza A/Taiwan/1/86 (H1N1, A/Beijing/353/89 (H3N2 e B/Yamagata/16/88. Os resultados indicaram a circulação de vírus antigenicamente relacionados aos três sorotipos pesquisados. Em 1992, altas taxas de soropositividade foram observadas para as cepas H1N1 (84% e H3N2 (56%, bem como anticorpos IH foram detectados em todas as faixas de idade, sugerindo intensa circulação desses vírus. No mesmo ano, a atividade da influenza B revelou-se em níveis moderados. A prevalência de anticorpos IH para os vírus H1N1, em 1993, foi similar à observada em 1992, indicando a circulação desses vírus em ambos os anos. Um aumento na prevalência dos vírus H3N2, em 1993, sugere que a cepa A/Beijing/353/89 (ou uma antigenicamente relacionada também circulou intensamente naquele ano. Do mesmo modo, a atividade dos vírus da influenza B aumentou em 1993, como apontam as infecções em todas as idades, particularmente entre os adultos jovens.A seroepidemiological study was carried out from 1992 to 1993 to estimate the prevalence of antibody to prevailing influenza virus strains circulating among patients attending the IEC Virology Laboratory in Belem, Northern Brazil. A total of 179 (11% of serum samples were obtained during the post-epidemic period and processed by the hemagglutination inhibition test against the A/Taiwan/1/86 (H1N1, A/Beijing/353/89 (H3N2, and B/Yamagata/16/88 types of influenza virus. The serological results indicate circulation of viruses antigenically related to all three strains during the two-year study period. In 1992, the overall

  6. Virus symptoms and viruses associated with two cucurbit crops grown in a derived savannah agro-ecology in Nigeria

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    AYO-JOHN

    2014-06-01

    Full Text Available Five watermelon varieties, Sugar Baby, Charleston Grey, Kaolak, Crimson Sweet and Oranaise and three cucumber varieties, Poinsett, Ashley and Royal hybrid were grown on the field in two trials (i late season between August and October 2008 and (ii early season between April and June 2012 in Abeokuta, Ogun State to evaluate the cultivars for virus symptoms and viruses under natural tropical conditions. Symptomatic leaf samples were collected from each crop variety and indexed for Cucumber mosaic virus (CMV, Melon necrotic spot virus (MNSV, Papaya ringspot virus (PRSV, Watermelon mosaic virus (WMV, Zucchini yellow mosaic virus (ZYMV and Cucumber green mottle mosaic virus (CGMMV in Double Antibody Sandwich (DAS Enzyme-linked immunosorbent assay (ELISA. The disease incidence was 100.0% at 6 weeks after planting (WAP for all the cucurbits crops for both seasons while the highest symptom severity score at 10 WAP was 4 and 5 for watermelon and 3.6 and 4 for cucumber in the 1st and 2nd trials. The viruses detected in late season were CMV, CGMMV and MNSV which occurred in all the cucumber and watermelon varieties. In addition PRSV, WMV and ZYMV occurred in mixed infection in the cucumber varieties Pointsett and Royal Hybrid. In the early season, PRSV was the most prevalent virus infection in the cucumber and watermelon varieties. Also CMV+PRSV, PRSV+WMV, and MNSV+PRSV occurred in mixed infection in Charleston Grey, Oranaise and Sugar Baby respectively. The viruses detected are among the viruses reported to limit the production of cucurbit crops world-wide.

  7. Aspectos funcionais, microbiológicos e morfológicos intestinais em crianças infectadas pelo vírus da imunodeficiência humana Functional, microbiological and morphological intestinal findings among human immunodeficiency virus infected children

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    Christiane Araujo Chaves Leite

    2006-12-01

    Full Text Available RACIONAL: O trato gastrointestinal é freqüentemente acometido nas crianças infectadas pelo vírus da imunodeficiência humana, com importantes repercussões no seu estado nutricional e sobrevida. A maioria dos estudos relacionados a esse tema foi desenvolvida com adultos, sendo menos investigado o problema nas crianças OBJETIVOS: Estudar aspectos digestivo-absortivos, microbiológicos e morfológicos intestinais em crianças infectadas pelo vírus da imunodeficiência humana MATERIAL E MÉTODOS: Onze crianças infectadas pelo vírus da imunodeficiência humana, menores de 13 anos, pertencentes às categorias clínicas A, B ou C, divididas em dois grupos: cinco pacientes com relato atual ou recente de diarréia e seis pacientes sem diarréia nos 30 dias que antecederam à inclusão no estudo. Investigação proposta: biopsia de intestino delgado e reto para análise morfológica e microbiológica, coprocultura, protoparasitológico de fezes, pesquisa de rotavírus, micobactérias e Cryptosporidium; teste da D-xilose RESULTADOS: Todos os pacientes testados (9/11 apresentavam má absorção da D-xilose (8,4-24,4 mg/dL. Os achados histopatológicos de intestino delgado foram inespecíficos, representados em sua maioria, por enteropatia grau I a II (6/10. Em todos os casos foi constatado aumento do infiltrado celular do córion. As alterações histopatológicas do reto também foram inespecíficas, com presença de aumento do infiltrado celular do córion. A pesquisa de microorganismos enteropatogênicos só foi positiva em dois casos, sendo identificado Mycobacterium avium intracellulare e Cryptosporidium nas fezes CONCLUSÕES: Demonstrou-se alta prevalência (100% de má absorção intestinal em crianças infectadas pelo vírus da imunodeficiência humana, com ou sem diarréia. Não foi possível estabelecer correlações quanto à presença de agentes enteropatogênicos, má absorção intestinal, alterações morfológicas intestinais e

  8. Prevalência ambulatorial em um hospital geral de marcadores para hepatites B e C em pacientes com infecção pelo vírus da imunodeficiência humana Ambulatorial prevalence of hepatitis B and C markers in patients with human immunodeficiency virus infection in a general hospital

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    Cristiane Valle Tovo

    2006-06-01

    Full Text Available RACIONAL: Os vírus das hepatites B (VHB e C (VHC e da imunodeficiência humana (HIV utilizam a mesma rota de transmissão, sendo a prevalência de VHB e VHC em pacientes infectados pelo HIV maior do que aquela encontrada na população em geral. OBJETIVO: Determinar a prevalência de marcadores para hepatites B e C em uma população de pacientes com HIV, bem como os fatores de risco envolvidos. PACIENTES E MÉTODOS: Dentre os 5 870 prontuários de pacientes com HIV em acompanhamento no Serviço de Infectologia do Hospital Nossa Senhora da Conceição, Porto Alegre, RS, foram aleatoriamente selecionados 587 prontuários. Destes, foram considerados para análise retrospectiva aqueles em que havia sido pesquisado algum marcador para hepatites B (HBsAg, anti-HBc ou anti-HBs ou C (anti-VHC, perfazendo o total de 343 pacientes. RESULTADOS: O HBsAg foi positivo em 14 de 306 (4,6% pacientes, anticorpo anti-HBs, em 40 de 154 (26,0% pacientes, e anti-HBc em 79 de 205 (38,5% pacientes. Dentre aqueles que realizaram anti-VHC, 126 de 330 (38,2% tinham-no positivo. Co-infecção por vírus B e C foi observada em 7 dentre os 296 pacientes que realizaram tanto o HBsAg, quanto o anti-VHC (2,4%. Dentre aqueles HBsAg positivos, a principal categoria de exposição foi o relacionamento homossexual masculino (50,0%. Dentre aqueles anti-VHC positivos, a principal categoria de exposição foi o uso de drogas ilícitas injetáveis (75,3%. Naqueles monoinfectados com HIV (185 pacientes, o fator de risco mais prevalente foi relacionamento heterossexual promíscuo ou com cônjuge infectado por HIV em 83 pacientes (44,9%. CONCLUSÃO: Em nosso meio, as co-infecções VHB-HIV e VHC-HIV são freqüentes, sendo observado maior impacto na associação do VHC com o HIV.BACKGROUND: Hepatitis B and C viruses and human immunodeficiency virus share the same route of transmission, and the prevalence of HBV and HCV infection in patients infected with HIV is greater than it is in the

  9. Scientific Opinion on the risk to plant health posed by <em>Tomato spotted wilt virus> to the EU territory with identification and evaluation of risk reduction options

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    EFSA Panel on Plant Health (PLH

    2012-12-01

    Full Text Available The Panel on Plant Health conducted a pest risk assessment for Tomato spotted wilt virus (TSWV including the identification and evaluation of risk reduction options. The plants for planting pathway is considered the most important one and rated as likely, with medium uncertainty. TSWV, reported in many Member States, has one of the widest host range for plant viruses and has three widely distributed thrips vector species in the risk assessment area. For countries falling under the provisions of 2000/29/EC Annex IIAII legislation, the probability of establishment is rated as very likely, with low uncertainty. For Finland and Sweden, protected zone under the 2000/29/EC Annex IB legislation, the probability of establishment is rated unlikely to moderately likely. Spread can occur through the activity of thrips vectors and through trade of infected hosts. The probability of spread in Member States under Annex IIAII provisions is evaluated as likely, with low uncertainty. In Finland and Sweden, spread is rated as unlikely to moderately likely, with medium uncertainty. Since TSWV may cause both yield and quality losses in a wide range of hosts, a major impact is predictable in the absence of appropriate control measures, with medium uncertainty. The risk reduction options evaluated by the Panel are those addressing either the sanitary status of the propagation material (including the provisions of 2000/29/EC Annex IIAII and Annex IB, statutory certification system and the use of voluntary industry standards or those addressing the control of TSWV epidemic development through actions directed at the virus or at its vectors (including cultural methods to reduce crop infestation and chemical or biological control of thrips vectors. Limitations of the current measures and the potential consequences of repealing the current legislation are discussed.

  10. Notas sôbre a evolução do virus vacínico em animais silvestres da fauna brasileira

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    Cicero Alves Moreira

    1956-06-01

    Full Text Available A note on the evolution of cow-pox virus in wild animals of Brazilian fauna. We have tried the sensibility of wild animals of Brazilian fauna to the cow-pox virus. The following specimens were submitted to experiences: Procyon cancrivorus, Hydrochoerus capybara, Cavea aperea, Coendu villosus, Didelphis aurita, Bradypus tridactylus, Euphractus sexcintus, Tamandua tetradactylus, Nasua narica, Dasyprocta aguti and Testudo tabulata. In all these animals, - excepting Bradypus tridactylus - we have obtained an infection with incubation (five days, aspect and duration similar to cow-pox of the laboratorial animals (calf and rabbit. In the Bradypus tridactylus howewer, the incubation was very long. Only after 30 days of inoculation we verified the infection with the formation of vesiculae and postulae.

  11. Importância, problemas e perspectivas do melhoramento visando resistência a viroses em plantas Importance, problems and perspectives of plant breeding concerning resistance to viruses

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    Rosa Lia Barbieri

    1995-01-01

    Full Text Available As viroses são um sério problema para a agricultura, podendo se tomar um fator limitante para o desenvolvimento de determinadas espécies. Medidas de controle, como a eliminação dos vetores, o uso de material sadio, a rotação de culturas e a erradicação de plantas infectadas são apenas soluções temporárias. A mais eficiente estratégia de controle envolve o uso de cultivares melhoradas para resistência ao vírus ou a seu vetor. A reduzida disponibilidade de fontes de resistência pode ser aumentada através da tecnologia do DNA recombinante, que traz novas perspectivas para o melhoramento de plantas resistentes a viroses.Virus diseases are a serious problem to agricuiture, can be a limitant factor to normal development of some crops. Control measures, like vectors elimination, healthy material use, culture rotation and infected plants eradication, are only transient solutions. The more efficient approach for control involves plant breeding resistant to virus or its vector. Reduced availability of resistance source can be increased through recombinant DNA technology, which brings new breeding perspectives to virus resistant crops.

  12. Transmissibilidade do virus do mosaico comum da soja (VMCS por intermédio das sementes de soja(Glycine max (L. Merrill Transmission of soybean mosaic virus (SMV by soybean seeds (Glycine max (L. Merrill

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    A.S.do R. Barros

    1992-01-01

    Full Text Available Diante da dispersão do vírus VMCS nas lavouras brasileiras de soja, o presente trabalho foi conduzido procurando verificar a transmissibilidade do patógeno pelas sementes portadoras do sintoma ("mancha café" característico da doença. Para tanto, material proveniente de campos contaminados foi testado quanto às porcentagens de emergência e infecção das plântulas. Os resultados obtidos permitiram concluir que o patógeno é transmitido por sementes, ainda que estas estejam livres de sintomas; contudo, apesar da inexistência de efeitos sobre a emergência, a elevação da freqüência de sementes com "mancha café" tende a ampliar o número de plântulas contaminadas.In view of the long-range dissemination of the virus SMV in Brazilian soybean fields, this research was conserned with the transmission of the pathogen by seeds that show seedcoat mottling. Seeds proceeding from contaminated fields were submitted to emergence tests and examination of infected seedlings. The results indicated that the pathogen is transmited through the seeds even when they do not show seedcoat mottling; although no particular effect was found on emergence percentage, the use of mottled seeds tends to increase the number of infected seelings.

  13. Development of a full-genome cDNA clone of Citrus leaf blotch virus and infection of citrus plants.

    Science.gov (United States)

    Vives, María Carmen; Martín, Susana; Ambrós, Silvia; Renovell, Agueda; Navarro, Luis; Pina, Jose Antonio; Moreno, Pedro; Guerri, José

    2008-11-01

    Citrus leaf blotch virus (CLBV), a member of the family Flexiviridae, has a ~9-kb single-stranded, positive-sense genomic RNA encapsidated by a 41-kDa coat protein. CLBV isolates are associated with symptom production in citrus including leaf blotching of Dweet tangor and stem pitting in Etrog citron (Dweet mottle disease), and some isolates are associated with bud union crease on trifoliate rootstocks, but Koch's postulates for this virus were not fulfilled. A full-genome cDNA of CLBV isolate SRA-153, which induces bud union crease, was placed under the T7 promoter (clone T7-CLBV), or between the 35S promoter and the Nos-t terminator, with or without a ribozyme sequence downstream of the CLBV sequence (clones 35SRbz-CLBV and 35S-CLBV). RNA transcripts from T7-CLBV failed to infect Etrog citron and Nicotiana occidentalis and N. benthamiana plants, whereas agro-inoculation with binary vectors carrying 35SRbz-CLBV or 35S-CLBV, and the p19 silencing suppressor, caused systemic infection and production of normal CLBV virions. Virus accumulation was similar in citron plants directly agro-infiltrated, or mechanically inoculated with wild-type or 35SRbz-CLBV-derived virions from Nicotiana, and the three sources incited the symptoms characteristic of Dweet mottle disease, but not bud union crease. Our results show that (1) virions derived from an infectious clone show the same replication, movement and pathogenicity characteristics as the wild-type CLBV; (2) CLBV is the causal agent of Dweet mottle disease but not of the bud union crease syndrome; and (3) for the first time an RNA virus could be successfully agro-inoculated on citrus plants. This infectious clone may become a useful viral vector for citrus genomic studies.

  14. Vírus da raiva em quirópteros naturalmente infectados no Estado de São Paulo, Brasil Rabies virus in naturally infected bats in the State of São Paulo, Southeastern Brazil

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    Karin Corrêa Scheffer

    2007-06-01

    Full Text Available OBJETIVO: Identificar as espécies de morcegos envolvidas na manutenção do ciclo da raiva, verificar a distribuição do vírus da raiva em tecidos e órgãos de morcegos e os períodos de mortalidade dos camundongos inoculados. MÉTODOS: A positividade para o vírus da raiva foi avaliada por imunofluorescência direta em morcegos de municípios do Estado de São Paulo, de abril de 2002 a novembro de 2003. A distribuição do vírus nos morcegos foi avaliada pela inoculação de camundongos e infecção de células N2A, com suspensões a 20% preparadas a partir de fragmentos de diversos órgãos e tecidos, além de cérebro e glândula salivar. A mortalidade dos camundongos foi observada diariamente, após inoculação intracerebral. RESULTADOS: Dos 4.393 morcegos pesquisados, 1,9% foram positivos para o vírus da raiva, pertencentes a dez gêneros, com predomínio de insetívoros. A média do período máximo de mortalidade dos camundongos pós-inoculação a partir de cérebros e glândulas salivares de morcegos hematófagos foi de 15,33±2,08 dias e 11,33±2,30 dias; insetívoros, 16,45±4,48 dias e 18,91±6,12 dias; e frugívoros, 12,60±2,13 dias e 15,67±4,82 dias, respectivamente. CONCLUSÕES: As espécies infectadas com o vírus da raiva foram: Artibeus lituratus, Artibeus sp., Myotis nigricans, Myotis sp., Eptesicus sp., Lasiurus ega, Lasiurus cinereus, Nyctinomops laticaudatus, Tadarida brasiliensis, Histiotus velatus, Molossus rufus, Eumops sp. e Desmodus rotundus. A pesquisa de vírus em diferentes tecidos e órgãos mostrou-se que os mais apropriados para o isolamento foram cérebro e glândulas salivares.OBJECTIVE: To identify the species of bats involved in maintaining the rabies cycle; to investigate the distribution of the rabies virus in the tissues and organs of bats and the time taken for mortality among inoculated mice. METHODS: From April 2002 to November 2003, bats from municipalities in the State of São Paulo were

  15. Microenxertia ex vitro para eliminação do vírus CABMV em maracujá-azedo Ex vitro micrografting aiming the CABMV virus elimination in passion fruit plant

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    Leonardo Monteiro Ribeiro

    2008-05-01

    Full Text Available O objetivo deste trabalho foi avaliar diferentes meios de cultura, utilizados sobre o ponto da enxertia, na microenxertia ex vitro para a eliminação do Cowpea aphid-borne mosaic virus (CABMV, em plantas de maracujá-azedo (Passiflora edulis Sims f. flavicarpa Deg.. Ápices caulinares, provenientes de plantas infectadas, foram microenxertados em plântulas obtidas pela germinação de sementes em substrato comercial esterilizado. Foram conduzidos experimentos com a microenxertia realizada no hipocótilo e no epicótilo, e foram utilizados cinco meios de cultura, que diferiam na concentração de fitorreguladores, aplicados no local da enxertia. O índice médio de microenxertos com folha expandida foi de 27,22 e 32,22%, quando a microenxertia foi realizada no hipocótilo e no epicótilo, respectivamente. Na microenxertia realizada no hipocótilo, não houve efeito da aplicação de meios de cultura. Na microenxertia realizada no epicótilo, o meio MS acrescido de 0,1 mg L-1 de AIB e 1 mg L-1 de BAP proporcionou 53,3% de microenxertos com folha expandida, número superior aos demais tratamentos e maior desenvolvimento das brotações. A indexação realizada pelo teste ELISA indireto, 80 a 100 dias após a microenxertia, mostrou que 93% das plantas testadas não apresentavam vírus detectável.The objective of this work was to evaluate the effect of different culture media, used over grafting spot, in ex vitro micrografting, in order to eliminate the Cowpea aphid-borne mosaic virus (CABMV in sour passion fruit plants (Passiflora edulis Sims f. flavicarpa Deg.. Cauline apexes, originated from infected plants, were micrografted in seedlings obtained by the germination of seeds in commercial sterilized substrate. Experiments were conducted with the micrografting performed on the hypocotyl and epicotyl using five culture media, which differed on their concentration of phytoregulators applied on the grafting spot. The average rate of micrografting

  16. Phototriggered cargo release from virus-like assemblies.

    Science.gov (United States)

    Brasch, Melanie; Voets, Ilja K; Koay, Melissa S T; Cornelissen, Jeroen J L M

    2013-01-01

    There has been tremendous progress towards the development of responsive polymers that are programmed to respond to an external stimulus such as light, pH and temperature. The unique combination of molecular packaging followed by slow, controlled release of molecular cargo is of particular importance for self-healing materials and the controlled release of drugs. While much focus and progress remains centred around synthetic carriers, viruses and virus-like particles can be considered ideal cargo carriers as they are intrinsically designed to package, protect and deliver nucleic acid cargo to host cells. Here, we report the encapsulation of a stimuli-responsive self-immolative polymer within virus-like assemblies of Cowpea Chlorotic Mottle Virus. Upon photo-irradiation, the self-immolative polymer undergoes a head-to-tail depolymerization into its monomeric subunits, resulting in the slow release of the molecular cargo. We propose that the liberated monomers are small enough to diffuse through the pores of the virus capsid shell and offer an alternative strategy for the controlled loading and unloading of the molecular cargo using viruses as cargo carriers.

  17. Caracterização biológica e molecular de isolados do Citrus tristeza virus com potencial para utilização em programas de pré-imunização Biological and molecular characterization of Citrus tristeza virus isolates with potential to use in cross-protection programs

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    Alessandra Tenório Costa

    2010-03-01

    Full Text Available O experimento teve como objetivo caracterizar biológica e molecularmente os isolados de CTV, obtidos de árvores de laranja Pêra em pomares das regiões Norte e Noroeste do Paraná, visando selecionar isolados fracos do Citrus tristeza virus com capacidade protetiva para pré-imunização. Os resultados apontaram sintomas fracos a moderados de caneluras e revelaram similaridade genética da maioria dos isolados analisados e o isolado fraco controle, sugerindo que as plantas selecionadas estão infectadas por haplótipos fracos de CTV, com potencial para serem utilizadas como plantas matrizes.A cross-protection program citrus tristeza disease, caused by Citrus tristeza virus (CTV has been developed in the Parana State, to obtain Pera orange mother plants. Thus, 20 plants were selected in the orange commercial fields of the North and Northwest region. Comparisons between mild and severe recognized isolates were made. The results showed mild-to-moderate stem pitting symptoms and the great majority of the isolates grouped up with the mild control isolate. These results suggest that the plants selected were infected by CTV mild haplotypes showing that they have mother plant potential.

  18. Inquérito sorológico para a detecção de anticorpos contra o vírus da Imunodeficiência Humana (VIH em crianças internadas em enfermaria geral A serological inquiry for the detection of antibodies against the Human Immunodeficiency Virus (HIV in children in a general ward

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    André Alexandre Osmo

    1990-04-01

    Full Text Available São apresentados os resultados de um inquérito sorológico para a detecção de anticorpos contra o Vírus da Imunodeficiência Humana (VIH, em grupo não selecionado de crianças, internadas numa enfermaria geral de pediatria. Foram testados 441 pacientes pelo método ELISA, com uma positividade de 1,1 %, cujos resultados foram confirmados pelos testes de Western-Blot e/ou ImunoBlot. Nenhum dos cinco pacientes com teste positivo apresentou história de transfusão anterior, enquanto que 4,3% dos pacientes estudados apresentaram história transfusional. Todas as mães apresentaram também testes ELISA positivos. Em quatro casos, pelo menos um dos genitores referiu uso de drogas por via endovenosa. Em todas as crianças, o modo de transmissão foi vertical. A partir desses achados sugere-se a necessidade de a equipe de saúde tomar precauções quando da manipulação de sangue ou secreções. Recomenda-se a realização de inquéritos anônimos em enfermarias de hospitais gerais para auxiliar na determinação da real prevalência das infecções pelo VIH.The results of a serum inquiry for detection of antibodies against the Human Immunodeficiency Virus in a non selected group of children, patients of a general pediatric ward, are reported. Of the 441 cases, the ELISA test gave a positive result for 1.1% of them. This result was confirmed by the Western-Blot or ImmunoBlot test. None of the five children who tested positive had a previous history of blood transfusion. These children's mothers showed positive results to the ELISA test. Of four cases, at least one of the parents was IV drug addicted. In every case the transmission was vertical. On the basis of these findings, it is suggested that hospital staff should take the necessary precautions when manipulating blood and secretions and it is recommended that serum inquiries be made on the wards of general hospitals in the attempt to establish reliable data on the prevalence of HIV.

  19. Scientific Opinion on the pest categorisation of the tospoviruses

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    EFSA Panel on Plant Health

    2012-07-01

    Full Text Available

    The European Commission requested EFSA’s Panel on Plant Health to perform the pest categorisation for the 24 viruses of the <em>Tospovirus> genus for the EU territory. The following tospoviruses were analysed: <em>Tomato spotted wilt virus> (TSWV, <em>Impatiens necrotic spot virus> (INSV, <em>Iris yellow spot virus> (IYSV, <em>Polygonum ringspot virus> (PolRSV, <em>Groundnut ringspot virus> (GRSV, <em>Tomato chlorotic spot virus> (TCSV, <em>Alstroemeria necrotic streak virus> (ANSV, <em>Chrysanthemum stem necrosis virus> (CSNV, <em>Melon severe mosaic virus> (MSMV, <em>Tomato yellow (fruit ring virus> (TYRV, <em>Tomato zonate spot virus> (TZSV, <em>Groundnut yellow spot virus> (GYSV, <em>Groundnut chlorotic fan-spot virus> (GCFSV, <em>Groundnut bud necrosis virus> (GBNV, <em>Zucchini lethal chlorosis virus> (ZLCV, <em>Capsicum chlorosis virus> (CaCV, <em>Watermelon bud necrosis virus> (WBNV, <em>Watermelon silver mottle virus> (WSMoV, <em>Tomato necrotic ringspot virus> (TNRV, <em>Calla lily chlorotic spot virus> (CCSV, <em>Melon yellow spot virus> (MYSV, <em>Soybean vein necrosis associated virus> (SVNaV, <em>Bean necrotic mosaic virus> (BeNMV and <em>Pepper necrotic spot virus> (PNSV. In reaching its conclusions, the Panel considered four parameters to be of critical importance in the risk assessment area: (i the presence of a tospovirus, (ii the existence of host plants, (iii the existence of thrips vector species and (iv the potential for damage to crops grown in Europe. Based on its analysis, the Panel concluded that the 24 viruses analysed could be allocated to four different risk groups. Seven viruses (GRSV, TCSV, ANSV, CSNV, MSMV, TYRV, TZSV for which both thrips species vectors and natural or experimental hosts crops are present in the EU territory were considered by the Panel to represent the highest risk to the EU territory. In

  20. Diagnósticos de enfermagem em pacientes com o Vírus da Imunodeficiência Humana/ Síndrome da Imunodeficiência Adquirida em assistência ambulatorial Diagnósticos de enfermería en pacientes con el Virus de la Inmunodeficiencia Humana/Síndrome de la Inmunodeficiencia Adquirida en asistencia de ambulatorio Nursing diagnoses in patients with Human Immunodeficiency Virus/Acquired Immunodeficiency Syndrome in outpatient care

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    Gilmara Holanda da Cunha

    2010-01-01

    Full Text Available OBJETIVO: Identificar diagnósticos de enfermagem em portadores de Vírus da Imunodeficiência Humana/ Síndrome da Imunodeficiência Adquirida (HIV/AIDS em assistência ambulatorial. MÉTODOS: Estudo transversal e descritivo realizado por meio da aplicação de um questionário com referencial na Teoria do Autocuidado de Orem. A amostra foi de 51 pacientes atendidos no ambulatório de um hospital público na cidade de Fortaleza-CE. RESULTADOS: Foram identificados 17 diagnósticos de enfermagem, destacando-se risco de infecção, disfunção sexual, déficit no autocuidado para alimentação e controle ineficaz do regime terapêutico. CONCLUSÃO: Os diagnósticos de enfermagem obtidos identificaram os principais problemas apresentados pelos portadores de HIV/AIDS, verificando déficits no autocuidado e em educação em saúde. O estudo contribuiu para que as intervenções de enfermagem sejam adequadas e direcionadas às necessidades existentes.OBJETIVO: Identificar diagnósticos de enfermería en portadores del Virus de la Inmunodeficiencia Humana/Síndrome de la Inmunodeficiencia Adquirida (HIV/SIDA en asistencia de ambulatorio. MÉTODOS: Estudio transversal y descriptivo realizado por medio de la aplicación de un cuestionario basado en la Teoría del Auto-cuidado de Orem. La muestra fue de 51 pacientes atendidos en el ambulatorio de un hospital público en la ciudad de Fortaleza-CE. RESULTADOS: Fueron identificados 17 diagnósticos de enfermería, destacándose: riesgo de infección, disfunción sexual, déficit en el auto-cuidado para alimentación y control ineficaz del régimen terapéutico. CONCLUSIÓN: Los diagnósticos de enfermería obtenidos identificaron los principales problemas presentados por los portadores de HIV/SIDA, verificándose déficits en el auto-cuidado y en la educación en salud. El estudio contribuye para que las intervenciones de enfermería sean adecuadas y dirigidas a las necesidades existentes.OBJECTIVE: To

  1. Influence of human t-cell lymphotropic virus type 1 (HTLV-1 Infection on laboratory parameters of patients with chronic hepatitis C virus Influência da infecção pelo vírus linfotrópico humano tipo 1 (HTLV-1 em parâmetros laboratoriais de pacientes com hepatite C crônica

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    Daniela Fernandes Cardoso

    2009-12-01

    Full Text Available Hepatitis C virus (HCV and human T-cell lymphotropic virus type 1 (HTLV-1 share routes of transmission and some individuals have dual infection. Although some studies point to a worse prognosis of hepatitis C virus in patients co-infected with HTLV-1, the interaction between these two infections is poorly understood. This study evaluated the influence of HTLV-1 infection on laboratory parameters in chronic HCV patients. Twelve HTLV-1/HCV-coinfected patients were compared to 23 patients infected only with HCV, in regard to demographic data, risk factors for viral acquisition, HCV genotype, presence of cirrhosis, T CD4+ and CD8+ cell counts and liver function tests. There was no difference in regard to age, gender, alcohol consumption, smoking habits, HCV genotype or presence of cirrhosis between the groups. Intravenous drug use was the most common risk factor among individuals co-infected with HTLV-1. These patients showed higher TCD8+ counts (p = 0.0159 and significantly lower median values of AST and ALT (p = 0.0437 and 0.0159, respectively. In conclusion, we have shown that HCV/HTLV-1 co-infected patients differs in laboratorial parameters involving both liver and immunological patterns. The meaning of these interactions in the natural history of these infections is a matter that deserves further studies.O vírus da hepatite C (VHC e vírus linfotrópico humano tipo 1 (HTLV-1 compartilham formas de transmissão e algumas pessoas apresentam coinfecção. Embora alguns estudos apontem para um pior prognóstico da infecção pelo VHC em pacientes coinfectados com HTLV-1, a interação entre estas infecções é mal compreendida. Este estudo avaliou a influência da infecção pelo HTLV-1 em parâmetros laboratoriais de pacientes com VHC. 12 coinfectados VHC/HTLV-1 foram comparados com 23 pacientes monoinfectados com VHC, no que diz respeito aos dados demográficos, fatores de risco para aquisição viral, genótipo do VHC, presença de cirrose

  2. Respiratory complications in Brazilian patients infected with human immunodeficiency virus Complicações respiratórias em pacientes brasileiros infectados pelo vírus da imunodeficiência humana

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    Adriana Weinberg

    1993-04-01

    Full Text Available PURPOSE: To determine how often and by what means an indentifiable pulmonary pathogen can be recognized in human immunodeficiency virus (HIV infected patients with respiratory disorders in Brazil, which are the most frequently observed microorganisms and what impact specific therapy has on these agents. PATIENTS AND METHODS: Thirty-five HIV seroposiüve subjects with respiratory complaints were studied. All patients had a complete history, physical examination and blood counts. The pulmonary assessment included chest radiograms; sputum examination for bacterial and fungal pathogens; bronchoscopy with bronchoalveolar lavage and transbronchial biopsy. Patients with treatable complications received standard antimicrobial therapy. RESULTS: One or more microorganisms were found in 24 subjects and another 3 individuals showed nonspecific interstitial pneumonitis. The sputum examination identified the pulmonary pathogens in 7 cases. The bronchoalveolar lavage and the histopathologic examination were diagnostic in 14% and 83%, respectively, of the 28 individuals that were submitted to bronchoscopy. The most frequently identified microorganism was P. carinii (55%, followed by M. tuberculosis (41% and cytomegalovirus (8%. The clinical, laboratory and radiographic findings failed to distinguish the specific pulmonary pathogens. Twenty-three individuals with P. carinii pneumonitis and/or tuberculosis received specific therapy; among the evaluable patients the therapeutic response rates were 79% for PCP and 100% for TB. CONCLUSIONS: We have determined that tuberculosis, P. carinii and cytomegalovirus pneumonitis are the most common respiratory opportunistic diseases in Brazilian patients infected with HIV. The histologic evaluation was crucial in order to identify the pulmonary pathogens. Tuberculosis in AIDS individuals displayed clinical and radiographic findings atypical for reactivation disease. However, most of the features observed in HIV infected

  3. Influence of temperature on symptom expression, detection of host factors in virus infected Piper nigrum L.

    Science.gov (United States)

    Umadevi, P; Bhat, A I; Krishnamurthy, K S; Anandaraj, M

    2016-05-01

    Expression of symptoms in black pepper plants (Piper nigrum) infected with Piper yellow mottle virus (PYMoV) vary depending on the season, being high during summer months. Here, we explored the influence of temperature on symptom expression in PYMoV infected P. nigrum. Our controlled environment study revealed increase in virus titer, total proteins, IAA and reducing sugars when exposed to temperature stress. There was change in the 2-D separated protein before and after exposure. The 2-D proteomics LC-MS identified host and viral proteins suggesting virus-host interaction during symptom expression. The analysis as well as detection of host biochemical compounds may help in understanding the detailed mechanisms underlying the viral replication and damage to the crop, and thereby plan management strategies.

  4. Bunias orientalis L. as a natural overwintering host OF Turnip mosaic virus

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    Tadeusz Kobyłko

    2012-12-01

    Full Text Available A virus was isolated, using mechanical inoculation, from hill mustard (Bunias orientalis L. plants exhibiting yellow mottling and blistering on leaves, which were frequently accompanied by asymmetric leaf narrowing. It systemically infected certain plants from the family Brassicaceae (Brassica rapa, Bunias orientalis, Hesperis matronalis, Sinapis alba as well as Cleome spinosa and Nicotiana clevelandii, and locally Atriplex hortensis, Chenopodium quinoa, Ch. amaranticolor, N. tabacum. In the sap, it maintained infectivity for 3-4 days and lost it after heating for 10 min. at a temperature of 55 - 60oC or when diluted with water at 10-3. Virus particles were thread- like with a length of 675 - 710 nm. Based on an analysis of biological properties of the pathogen, serological response, particle morphology and data from field observations, it was identified as an isolate of Turnip mosaic virus (TuMV, and hill mustard was recognised as a natural overwintering host for this pathogen.

  5. Characterization of a new isolate of pepper chlorotic spot virus from Yunnan province, China.

    Science.gov (United States)

    Zheng, Kuanyu; Chen, Tsung-Chi; Yeh, Shyi-Dong; Rahman, Md Siddiqur; Su, Xiaoxia; Wu, Kuo; Li, Ting; Zhang, Zhongkai; Dong, Jiahong

    2017-05-19

    A new isolate, 14YV733, of pepper chlorotic spot virus (PCSV) from chili peppers in Yunnan province of China was identified. The typical tospoviral particles of 80-120 nm in diameter were observed by electron microscopy. The virus caused systemic symptoms in several solanaceous plants and the Brassica rapa L. Chinensis group with mechanical inoculation. The sap from infected leaves reacted positively to a rabbit antibody to the N protein of watermelon silver mottle virus (WSMoV) in immunoblotting. The S, M, and L RNAs of PCSV-14YV733 are 3310 nts, 4711 nts, and 8913 nts long, respectively. This is the first report of complete sequences of PCSV in mainland China. Phylogenetic analysis of all tospoviral proteins indicated that PCSV-14YV733 is closely related to members of the WSMoV serogroup.

  6. Enteric and indicator virus removal by surface flow wetlands.

    Science.gov (United States)

    Rachmadi, Andri T; Kitajima, Masaaki; Pepper, Ian L; Gerba, Charles P

    2016-01-15

    We investigated the occurrence and attenuation of several human enteric viruses (i.e., norovirus, adenovirus, Aichi virus 1, polyomaviruses, and enterovirus) as well as a plant virus, pepper mild mottle virus (PMMoV), at two surface flow wetlands in Arizona. The retention time in one of the wetlands was seven days, whereas in the other wetland it could not be defined. Water samples were collected at the inlet and outlet from the wetlands over nine months, and concentration of viral genomes was determined by quantitative polymerase chain reaction (qPCR). Of the human enteric viruses tested, adenovirus and Aichi virus 1 were found in the greatest prevalence in treated wastewater (i.e., inlet of the wetlands). Reduction efficiencies of enteric viruses by the wetlands ranged from 1 to 3 log10. Polyomaviruses were generally removed to below detection limit, indicating at least 2 to 4 log10 removal. PMMoV was detected in a greater concentration in the inlet of both wetlands for all the viruses tested (10(4) to 10(7) genome copies/L), but exhibited little or no removal (1 log10 or less). To determine the factors associated with virus genome attenuation (as determined by qPCR), the persistence of PMMoV and poliovirus type 1 (an enterovirus) was studied in autoclaved and natural wetland water, and deionized water incubated under three different temperatures for 21 days. A combination of elevated water temperature and biological activities reduced poliovirus by 1 to 4 log10, while PMMoV was not significantly reduced during this time period. Overall, PMMoV showed much greater persistence than human viruses in the wetland treatment.

  7. Carrot yellow leaf virus is associated with carrot internal necrosis.

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    Ian P Adams

    Full Text Available Internal necrosis of carrot has been observed in UK carrots for at least 10 years, and has been anecdotally linked to virus infection. In the 2009 growing season some growers had up to 10% of yield with these symptoms. Traditional diagnostic methods are targeted towards specific pathogens. By using a metagenomic approach with high throughput sequencing technology, other, as yet unidentified causes of root necrosis were investigated. Additionally a statistical analysis has shown which viruses are most closely associated with disease symptoms. Carrot samples were collected from a crop exhibiting root necrosis (102 Affected: 99 Unaffected and tested for the presence of the established carrot viruses: Carrot red leaf virus (CtRLV, Carrot mottle virus (CMoV, Carrot red leaf associated viral RNA (CtRLVaRNA and Parsnip yellow fleck virus (PYFV. The presence of these viruses was not associated with symptomatic carrot roots either as single viruses or in combinations. A sub-sample of carrots of mixed symptom status was subjected to MiSeq sequencing. The results from these tests suggested Carrot yellow leaf virus (CYLV was associated with symptomatic roots. Additionally a novel Torradovirus, a novel Closterovirus and two novel Betaflexiviradae related plant viruses were detected. A specific diagnostic test was designed for CYLV. Of the 102 affected carrots, 98% were positive for CYLV compared to 22% of the unaffected carrots. From these data we conclude that although we have yet to practically demonstrate a causal link, CYLV appears to be strongly associated with the presence of necrosis of carrots.

  8. Avaliação da vacina anti-rábica ERA, frente a variantes antigênicas do vírus da raiva, em diferentes períodos pós-imunização Evaluation of the ERA antirabies vaccine against antigenic variants of rabies virus in different post-immunization periods

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    Cláudia C. Cordeiro

    1990-12-01

    Full Text Available Avaliou-se, em camudongos, os níveis de proteção conferidos por uma vacina anti-rábica atenuada, preparada em cultura de tecido renal a partir da amostra ERA, frente a diferentes variantes antigênicas dos vírus da raiva. Utilizaram-se dois esquemas de vacinação, representados por uma única dose e por 6 doses aplicadas em dias alternados. Os diferentes camundogos dos grupos experimentais foram desafiados, em diversos períodos pós-imunização (15, 30, 60 e 120 dias, com variantes procedentes de cães (São Paulo e Nigéria, de morcego (DR-19 e Pernambuco, de raposa (Rio Grande do Norte e CVS "Challenge Virus Standard". Os resultados obtidos permitiram constatar que a vacina ERA foi eficaz contra todas as variantes de rua e silváticas do vírus rábico, independentemente do esquema vacinal. Contra as cepas adaptadas no laboratório DR-19 e CVS, quando aplicada em uma única dose, sua eficácia foi menor do que quando aplicada em 6 doses.Protection levels of an attenuated antirabies vaccine, of ERA origin, prepared in Kidney tissue culture, were evaluated in mice. Two schemes of vaccination were utilized: a single dose and 6 doses on alternate days. Animals of different experimental groups were challenged at 15, 30, 60 and 120 days post-immunization with six antigenic variants of rabies virus: strains of dog origin (S. Paulo, Brazil and Nigéria, vampire origin (DR-19 and Pernambuco, Brazil, fox origin (Rio Grande do Norte,Brazil, and CVS (Challenge Virus Standard. The results showed the effectiveness of the ERA vaccine against all antigenic variants of street and sylvatic rabies virus, independently of the vaccination scheme. Against the laboratory strains (DR-19 and CVS the ERA vaccine was less effective, mainly in the groups vaccinated with a single dose.

  9. Development of a polymerase chain reaction assay for the detection of pseudorabies virus in clinical samples Desenvolvimento de um ensaio de reação de polimerase em cadeia para detecção do vírus da pseudo-raiva em amostras clínicas

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    Lester J. Pérez

    2009-09-01

    Full Text Available Aujeszky's disease, also known as pseudorabies causes severe economic losses in swine industry and affects the pig husbandry all over the world. The conventional diagnostic procedure is time-consuming and false-negative results may occur in submissions from latently infected animals. The development, optimization and evaluation of a polymerase chain reaction (PCR assay are presented for the diagnosis of pseudorabies infection. This assay was based on the amplification of a highly conserved viral gD gene fragment. PCR products of the expected size were obtained from PRV strains. Non-specific reactions were not observed when a related herpesvirus, other porcine DNA genome viruses and uninfected cells were used to assess PCR. The analytical sensitivity of the test was estimated to be 1.34 TCID50/50 uL. The analysis of tissue homogenate samples from naturally infected animals proved the potential usefulness of the method for a rapid disease diagnosis from field cases. A rapid, sensitive and specific PCR-based diagnostic assay to detect pseudorabies virus in clinical samples is provided.A doença de Aujeszky, também conhecida como pseudo-raiva, causa perdas econômicas graves na indústria suína e afeta a criação de suínos em todo o mundo. O procedimento de diagnóstico convencional é demorado, podendo ocorrer resultados falso-negativos em animais infectados de forma latente. Este estudo apresenta o desenvolvimento, otimização e avaliação de um ensaio de Reação de Polimerase em Cadeia para o diagnóstico da pseudo-raiva. O ensaio baseou-se na amplificação do fragmento genético viral gD altamente conservado. Os produtos da PCR de tamanho esperado foram obtidos a partir de isolados de PRV. Não foram observadas reações inespecíficas quando foram testados herpes-vírus relacionados, outros vírus DNA de suínos e células não infectadas. A sensibilidade analítica estimada do teste foi 1,34 TCID50/50 uL. A análise de homogenatos

  10. Animal infections by vaccinia-like viruses in the state of Rio de Janeiro: an expanding disease Infecções animais por vírus semelhantes ao vaccínia no estado do Rio de Janeiro: uma doença em expansão

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    Hermann G. Schatzmayr

    2009-07-01

    Full Text Available In the present study we investigated the presence of infections by vaccinia-like viruses in dairy cattle from 12 counties in the state of Rio de Janeiro in the last 9 years. Clinical specimens were collected from adult animals with vesicular/pustular lesions mainly in the udder and teats, and from calves with lesions around the nose and mouth. A plaque reduction neutralization test (PRNT was applied to search for antibodies to Orthopoxvirus; the vesicular/pustular fluids and scabs were examined by PCR, electron microscopy (EM and by inoculation in VERO cells for virus isolation. Antibodies to Orthopoxvirus were detected in most cases. The PCR test indicated a high nucleotide homology among the isolates and the vaccinia viruses (VACV used as controls. By EM, typical orthopoxvirus particles were observed in some specimens. The agents isolated in tissue culture were confirmed as vaccinia-like viruses by EM and PCR. The HA gene of the vaccinia-like Cantagalo/IOC virus isolated in our laboratory was sequenced and compared with other vaccinia-like isolates, showing high homology with the original Cantagalo strain, both strains isolated in 1999 from dairy cattle. Antibodies to Orthopoxvirus were detected in one wild rodent (genus Akodon sp. collected in the northwestern region of the state, indicating the circulation of poxvirus in this area. Nonetheless, PCR applied to tissue samples collected from the wild rodents were negative. Vesicular/pustular lesions in people in close contact with animals have been also recorded. Thus, the vaccinia-like virus infections in cattle and humans in the state seem to be an expanding condition, resulting in economic losses to dairy herds and leading to transient incapacitating human disease. Therefore, a possible immunization of the dairy cattle in the state should be carefully evaluated.Neste estudo avaliou-se a presença de infecções por vírus semelhantes ao vírus vaccínia (VACV em gado leiteiro em 12 munic

  11. Diagnosis and clinic-pathological findings of influenza virus infection in Brazilian pigs Diagnóstico, achados clínicos e patológicos da infecção pelo vírus influenza em suínos no Brasil

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    Daniela S. Rajão

    2013-01-01

    Full Text Available Influenza A virus (IAV is a respiratory pathogen of pigs and is associated with the porcine respiratory disease complex (PRDC, along with other respiratory infectious agents. The aim of this study was to diagnose and to perform a clinic-pathological characterization of influenza virus infection in Brazilian pigs. Lung samples from 86 pigs in 37 farrow-to-finish and two farrow-to-feeder operations located in the States of Minas Gerais, São Paulo, Paraná, Rio Grande do Sul, Santa Catarina, and Mato Grosso were studied. Virus detection was performed by virus isolation and quantitative real time reverse-transcription PCR (qRT-PCR. Pathologic examination and immunohistochemistry (IHC were performed in 60 lung formalin-fixed paraffin-embedded tissue fragments. Affected animals showed coughing, sneezing, nasal discharge, hyperthermia, inactivity, apathy, anorexia, weight loss and growth delay, which lasted for five to 10 days. Influenza virus was isolated from 31 (36.0% lung samples and 36 (41.9% were positive for qRT-PCR. Thirty-eight (63.3% lung samples were positive by IHC and the most frequent microscopic lesion observed was inflammatory infiltrate in the alveoli, bronchiole, or bronchi wall or lumen (76.7%. These results indicate that influenza virus is circulating and causing disease in pigs in several Brazilian states.O vírus influenza A (IAV é um patógeno respiratório comum de suínos e faz parte do complexo de doenças respiratórias do suíno (PRDC junto com outros agentes infecciosos. O objetivo deste estudo foi diagnosticar e realizar a caracterização clínica e patológica de casos/surtos de influenza em suínos brasileiros. Foram utilizadas amostras de tecido pulmonar de 86 suínos de 37 granjas de ciclo completo e duas unidades produtoras de leitões localizadas em Minas Gerais, São Paulo, Paraná, Rio Grande do Sul, Santa Catarina e Mato Grosso. A detecção viral em fragmentos pulmonares frescos foi realizada através do

  12. Gastroenteric virus detection in fecal samples from women in Goiânia, State of Goiás, Brazil Detecção de vírus gastroentéricos em amostras fecais de mulheres em Goiânia, Estado de Goiás, Brasil

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    Rui Gilberto Ferreira

    2010-06-01

    Full Text Available INTRODUCTION: This was a prospective study that included women seen in the obstetrics and gynecology sector of Hospital das Clínicas, Federal University of Goiás, in Goiânia, State of Goiás, with the aim of detecting rotaviruses, adenoviruses, caliciviruses and astroviruses. Eighty-four women participated in the study and from these, 314 fecal samples were collected. Out of all of the women, 29 were seropositive for HIV and 55 were seronegative, and 45 and 39 were pregnant and non-pregnant, respectively. METHODS: Fecal samples were collected from each woman once every two months over the period from July 2006 to June 2007, and they were screened for rotaviruses by means of polyacrylamide gel electrophoresis and immunoenzymatic assays, for caliciviruses and astroviruses by means of RT-PCR and for adenovirus by means of immunoenzymatic assays. The astroviruses were genotyped using nested PCR. RESULTS: Among the 84 patients, 19 (22.6% were positive for either calicivirus (14/19 or astrovirus (6/19, while one women was positive for both viruses in fecal samples collected on different occasions. Most of the positive samples were collected during the months of July and August (astrovirus and September and October (calicivirus. None of the samples analyzed was positive for rotavirus or adenovirus. Gastroenteric viruses were detected in 13/19 (68.4% of the pregnant women, whether HIV-seropositive or not. CONCLUSIONS: The results from the present study showed that neither pregnancy nor HIV-seropositive status among the women increased the risk of infection by any of the gastroenteric viruses studied. This study presents data on gastroenteric virus detection among pregnant and/or HIV-positive women.INTRODUÇÃO: Este foi um estudo prospectivo que incluiu mulheres atendidas no setor de obstetrícia e ginecologia do Hospital das Clínicas da Universidade Federal de Goiás, em Goiânia, Estado de Goiás com o objetivo de detectar rotavírus, adenov

  13. Infecção pelo vírus da hepatite B em hemofílicos em Goiás: soroprevalência, fatores de risco associados e resposta vacinal Seroprevalence, vaccination response and risk factors for hepatitis B virus infection in hemophiliacs in Goiás

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    Renato S. Tavares

    2004-01-01

    Full Text Available Objetivando determinar a prevalência da infecção pelo vírus da hepatite B (HBV em hemofílicos em Goiás, analisar os fatores de risco associados e avaliar a resposta vacinal contra hepatite B, 102 pacientes foram entrevistados e amostras sangüíneas coletadas para detecção dos seguintes marcadores sorológicos: HBsAg, anti-HBs e anti-HBc. Uma prevalência global de 43,7% (IC 95%: 33,5-54,2 para infecção pelo HBV foi encontrada. A análise multivariada dos fatores de risco mostrou que o número de episódios transfusionais e sorologia positiva para o vírus da hepatite C estiveram significantemente associados à positividade ao HBV. Foram identificados 49 (48,1% hemofílicos susceptíveis a esta infecção, sendo imunizados 30 pacientes com a vacina recombinante Euvax-B. Destes, 28 (93,3% indivíduos apresentaram títulos de anti-HBs maiores que 10 UI/L, o que mostra uma boa resposta à vacina. Os achados deste estudo ressaltam a importância das medidas de controle e prevenção da hepatite B nesta população.In order to study the prevalence and risk factors for hepatitis B in hemophiliacs in Goiás, 102 patients were interviewed and blood samples collected and screened for the following serological markers: HBsAg, anti-HBs and anti-HBc. An overall prevalence of 43.7% (95% IC: 33.5-54.2 was found to hepatitis B virus (HBV infection. Multivariate analysis of risk factors showed that the number of transfusions and positive serology for hepatitis C virus were significantly associated with HBV positivity. There were 48 (48.1% susceptible patients for this infection, of whom 30 were immunized with the Euvax-B vaccine. Among them, 28 (93.3% individuals developed anti-HBs titers higher than 10 IU/L. Thus, a good response was observed in the studied population. The findings of this study emphasize the importance of strategies of control and prevention of hepatitis B in this population.

  14. Rotavírus, adenovírus, astrovírus, calicivírus e "Small Round Virus Particles" em fezes de crianças, com e sem diarréia aguda, no período de 1987 a 1988, na Grande São Paulo Rotavirus, adenovirus, astrovirus, calicivirus and Small Round Virus Particles in faeces of children with and without acute diarrhea within the period of 1987 to 1988, in São Paulo

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    María do Carmo Sampaio Tavares Timenetsky

    1993-06-01

    Full Text Available No período de agosto de 1987 a setembro de 1988, 193 amostras de fezes de crianças, com e sem sintomatologia diarréica aguda, foram submetidas às provas diagnósticas do ensaio imunoenzimático (EIE, eletroforese em gel de poliacrilamida (EGPA e microscopia eletrônica (ME para a detecção de vírus. A positividade para Rotavírus, Adenovírus, Astrovírus, Calicivírus e "Small Round Virus Particles" (SRVP foi encontrada nas 97 crianças com diarréia aguda em 11,3%, 3,1%, 2,1%, l,0%e4,l%, respectivamente. Das 96 crianças sem diarréia, 4,2% foram positivas para Rotavírus, 1,0% para Calicivírus e 7,3% para SRVP. Das 15 amostras positivas para Rotavírus, 14 apresentaram perfil eletroforético característico do Grupo A e 1 amostra do Grupo C. A análise dos eletroforotipos demonstrou a grande heterogeneidade de perfis e a predominância do perfil "longo". A associação de vírus, bactéria e parasita foi encontrada tanto em crianças com diarréia como em crianças sem diarréia.Between 1987 and 1988, 193 faecal specimens from children, with or without diarrhea, were submitted to enzyme immunoassay, polyacrylamide-gel electrophoresis and electronmicroscopy tests for virus detection. The positivity for Rotavirus, Adenovirus, Astrovirus, Calicivirus and Small Round Virus Particles (SRVP was 11.3%, 3.1%, 2.1%, 1.0% and 4.1%, respectively, for the 97 children with acute diarrhea. Of the 96 children without diarrhea, 4.2% were positive for Rotavirus, 1.0% for Calicivirus and 7.3% for SRVP. Of 15 positive specimens for Rotavirus, 14 showed electrophoretic patterns proper to group A and 1 specimen of group C Rotavirus. The analysis of electrophorotypes demonstrated great heterogeneity of electrophoretic patterns and predominance of subgroup 2, "long". The association of virus, bacteria and parasites was present both in children with or without acute diarrhea.

  15. Distúrbios de leitura e escrita em portadora do vírus da imunodeficiência humana: estudo de caso Reading and writing disorders in a patient with the human immunodeficiency virus: a case study

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    Vivian Alvina de Camargo Frias

    2008-06-01

    Full Text Available Este artigo tem por objetivo descrever o caso de uma criança soropositiva para o para o vírus da imunodeficiência humana com distúrbios de leitura e escrita, analisando as estratégias mais funcionais e os resultados obtidos nas avaliações pré e pós-terapia fonoaudiológica. Foi aplicado um programa terapêutico fonoaudiológico fechado (15 sessões, com duração de 50 minutos, semanalmente, em uma criança do sexo feminino com 11 anos de idade, paciente do Laboratório de Investigação Fonoaudiológica em Leitura e Escrita. Foram utilizadas estratégias variadas enfocando as áreas de processamento auditivo, consciência fonológica e fonêmica, leitura e escrita. Ao início e término do referido programa, foram realizadas avaliações de linguagem escrita e exames audiológicos. Após as 15 sessões, verificou-se melhora tanto na decodificação de palavras e produção escrita de pequenos textos (adequados do ponto de vista da competência genérica como no processamento da informação auditiva. As estratégias mais motivadoras foram: atividades com poemas infantis, atividades no computador, palavras cruzadas, caça-palavras e jogo de histórias escritas para complementação. No caso em questão, trabalhar com estratégias dentro do foco de interesse da criança e balancear o novo com o desconhecido contribuíram para o sucesso funcional do processo terapêutico em leitura e escrita. A avaliação audiológica (comportamental, eletroacústica e eletrofisiológica, antes e após um programa terapêutico fechado, é importante, pois é fundamental para monitorar a evolução terapêutica, bem como para avaliar a relevância desse programa.This paper had the aim to describe the case of a human immunodeficiency virus-positive child with reading and writing disorders, analyzing the functional strategies and the results obtained in the pre and post speech-language therapy evaluations. A weekly closed speech-language therapeutic program

  16. Hiperpigmentação cutânea em pacientes com insuficiência renal crônica em hemodiálise infectados pelo vírus da hepatite C Increased skin pigmentation in patients with chronic renal failure undergoing hemodialysis infected with the hepatitis C virus

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    Humberto Kukhyun Choi

    2003-01-01

    Full Text Available OBJETIVO: A hiperpigmentação cutânea é comumente encontrada em pacientes portadores de insuficiência renal crônica (IRC, sendo também uma das manifestações mais evidentes da Porfiria Cutânea Tarda (PCT. Essa doença, que tem sido relatada em pacientes em hemodiálise (HD, tem como um dos fatores precipitantes a infecção pelo vírus da hepatite C (HCV. Este estudo tem como objetivo avaliar a prevalência de hiperpigmentação cutânea difusa em pacientes com IRC infectados pelo HCV. MÉTODOS: Foi desenvolvido um estudo transversal com 47 pacientes (idade média de 50,35 ± 15,16 anos, 31 homens e 16 mulheres que estavam realizando hemodiálise na Unidade de Diálise do Hospital de Clínicas de Porto Alegre. Os pacientes foram divididos em dois grupos: grupo 1, anti-HCV positivos (n=17, e grupo 2, anti-HCV negativos (n=30. RESULTADOS: A prevalência de pacientes com hiperpigmentação cutânea relacionada a HD foi de 36,2% (n=17. Havia 10 pacientes (58,8 % no grupo 1 e sete pacientes (23,3% no grupo 2 (Razão de Risco de 2,52 e Intervalo de Confiança de 95% de 1,18 a 5,4; pBACKGROUND: Skin pigmentation is commonly found in patients with chronic renal failure (CRF. This symptom is also one of the most evident features of Porphyria Cutanea Tarda (PCT. Hepatitis C virus (HCV is an important precipitating agent of this disease, which has been described in patients undergoing hemodialysis (HD. In this paper, we intend to evaluate the prevalence of difuse skin hyperpigmentation in patients with CRF infected with the HCV. METHODS: We developed a transversal study with 47 patients (mean age 50,35 + 15,16 years; 31 men and 16 women who were on hemodialysis in march of 2001 at the Unit of Dialysis of Hospital de Clínicas de Porto Alegre. Patients were divided in two groups: group 1, anti-HCV positives (n=17, and group 2, anti-HCV negatives (n=30. RESULTS: The prevalence of skin hyperpigmentation related to HD was 36,2% (n=17. There were 10

  17. Maize Elongin C interacts with the viral genome-linked protein, VPg, of Sugarcane mosaic virus and facilitates virus infection.

    Science.gov (United States)

    Zhu, Min; Chen, Yuting; Ding, Xin Shun; Webb, Stephen L; Zhou, Tao; Nelson, Richard S; Fan, Zaifeng

    2014-09-01

    The viral genome-linked protein, VPg, of potyviruses is involved in viral genome replication and translation. To determine host proteins that interact with Sugarcane mosaic virus (SCMV) VPg, a yeast two-hybrid screen was used and a maize (Zea mays) Elongin C (ZmElc) protein was identified. ZmELC transcript was observed in all maize organs, but most highly in leaves and pistil extracts, and ZmElc was present in the cytoplasm and nucleus of maize cells in the presence or absence of SCMV. ZmELC expression was increased in maize tissue at 4 and 6 d post SCMV inoculation. When ZmELC was transiently overexpressed in maize protoplasts the accumulation of SCMV RNA was approximately doubled compared with the amount of virus in control protoplasts. Silencing ZmELC expression using a Brome mosaic virus-based gene silencing vector (virus-induced gene silencing) did not influence maize plant growth and development, but did decrease RNA accumulation of two isolates of SCMV and host transcript encoding ZmeIF4E during SCMV infection. Interestingly, Maize chlorotic mottle virus, from outside the Potyviridae, was increased in accumulation after silencing ZmELC expression. Our results describe both the location of ZmElc expression in maize and a new activity associated with an Elc: support of potyvirus accumulation. © 2014 The Authors. New Phytologist © 2014 New Phytologist Trust.

  18. Toxoplasmosis in distemper virus infected dogs/ Toxoplasmose em cães co-infectados com o vírus da cinomose

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    Aristeu Vieira da Silva

    2002-05-01

    Full Text Available This report shows four cases of dog´s toxoplasmosis, pointing that the neurologic signalment of toxoplasmosis and distemper is quite indistinguishable. The anmnestic data of flesh-eating and cat contact is linked with easier suspect of toxoplasmosis, reinforced by the presence of linfadenopathy, pneumonia and neurologic signs. A treatment proposal is offered, being a preventive measure to toxoplasmosis in distemper dogs, according to the clinician diagnostic conditions.Relatam-se quatro casos de toxoplasmose em cães, evidenciando-se a sintomatologia nervosa indistinguível daquela causada pela cinomose de forma isolada e mostrando a ocorrência concomitante das duas enfermidades. Sugere-se que os dados de anamnese, como hábitos de carnivorismo e contato com gatos, aliados a sinais clínicos como linfadenopatia, pneumonia, secreção ocular purulenta e distúrbios neurológicos, favoreçam a suspeita clínica de toxoplasmose. Propõe-se um tratamento, preventivo para a toxoplasmose, nos cães com cinomose, baseado nas condições de diagnóstico disponíveis pelo clínico.

  19. Additive interactions of unrelated viruses in mixed infections of cowpea (Vigna unguiculata L. Walp).

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    Nsa, Imade Y; Kareem, Kehinde T

    2015-01-01

    This study was carried out to determine the effects of single infections and co-infections of three unrelated viruses on three cowpea cultivars (one commercial cowpea cultivar "White" and 2 IITA lines; IT81D-985 and TVu 76). The plants were inoculated with Cowpea aphid-borne mosaic virus (CABMV), genus Potyvirus, Cowpea mottle virus (CMeV), genus Carmovirus and Southern bean mosaic virus (SBMV), genus Sobemovirus singly and in mixture (double and triple) at 10, 20, and 30 days after planting (DAP). The treated plants were assessed for susceptibility to the viruses, growth, and yield. In all cases of infection, early inoculation resulted in higher disease severity compared with late infection. The virus treated cowpea plants were relatively shorter than buffer inoculated control plants except the IT81D-985 plants that were taller and produced more foliage. Single infections by CABMV, CMeV, and SBMV led to a complete loss of seeds in the three cowpea cultivars at 10 DAP; only cultivar White produced some seeds at 30 DAP. Double and triple virus infections led to a total loss of seeds in all three cowpea cultivars. None of the virus infected IITA lines produced any seeds except IT81D-985 plants co-infected with CABMV and SBMV at 30 DAP with a reduction of 80%. Overall, the commercial cultivar "White" was the least susceptible to the virus treatments and produced the most yield (flowers, pods, and seeds). CABMV was the most aggressive of these viruses and early single inoculations with this virus resulted in the premature death of some of the seedlings. The presence of the Potyvirus, CABMV in the double virus infections did not appear to increase disease severity or yield loss. There was no strong evidence for synergistic interactions between the viruses in the double virus mixtures.

  20. Pathogenicity of different rabies virus isolates and protection test in vaccinated mice Patogenicidade de diferentes isolados do vírus da raiva e teste de proteção em camundongos vacinados

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    Elenice M.S. Cunha

    2010-10-01

    Full Text Available This study was aimed to evaluate and compare the pathogenicity of rabies virus isolated from bats and dogs, and to verify the efficacy of a commercial rabies vaccine against these isolates. For evaluation of pathogenicity, mice were inoculated by the intramuscular route (IM with 500MICLD50/0.03mL of the viruses. The cross-protection test was performed by vaccinating groups of mice by the subcutaneous route and challenged through the intracerebral (IC route. Isolates were fully pathogenic when inoculated by the IC route. When inoculated intramuscularly, the pathogenicity observed showed different death rates: 60.0% for the Desmodus rotundus isolate; 50.0% for dog and Nyctinomops laticaudatus isolates; 40.0% for Artibeus lituratus isolate; 9.5% Molossus molossus isolate; and 5.2% for the Eptesicus furinalis isolate. Mice receiving two doses of the vaccine and challenged by the IC route with the isolates were fully protected. Mice receiving only one dose of vaccine were partially protected against the dog isolate. The isolates from bats were pathogenic by the IC route in mice. However, when inoculated through the intramuscular route, the same isolates were found with different degrees of pathogenicity. The results of this work suggest that a commercial vaccine protects mice from infection with bat rabies virus isolates, in addition to a canine rabies virus isolate.O estudo avaliou e comparou as propriedades patogênicas de cinco isolados do vírus da raiva de morcegos e um isolado do vírus da raiva de cão e analisou a eficácia de vacina comercial contra estes isolados, em camundongos. Para o estudo de patogenicidade camundongos foram inoculados pela via IM com 0,1 mL contendo 500MICLD50/0,03mL das amostras de vírus. Quando inoculados pela via IC, os isolados do vírus da raiva provocaram a morte de 100% dos camundongos. No entanto, 500MICLD50/0,03mL das mesmas amostras, inoculadas pela via IM, ocasionaram mortalidade de: 60,0% quando a amostra

  1. Role of the envelope glycoproteins in the infection cycle of tomato spotted wilt virus

    NARCIS (Netherlands)

    Kikkert, M.

    1999-01-01

    <em>Tomato spotted wilt virus> (TSWV) forms the type member of the genus <em>Tospovirus> , which today harbors more than twelve different species. TSWV is able to infect an enormous variety of different plants, to which it often causes devastating effects, re

  2. Prevalência e fatores de risco associados à infecção pelo Vírus da Imunodeficiência Humana em parturientes Prevalencia y factores de riesgo asociados con la infección del Virus de la Inmunodeficiencia Humana en parturientas Prevalence and risk factors for Human Immunodeficiency Virus infection in pregnant women

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    Kelly Cristina de Lima Ramos Pinto Alves

    2009-06-01

    Full Text Available OBJETIVO: Determinar a prevalência e os fatores de risco associados à infecção pelo Vírus da Imunodeficiência Humana (HIV em parturientes admitidas no Hospital Estadual de Presidente Prudente, SP. MÉTODOS: Estudo epidemiológico transversal com 873 parturientes admitidas no Hospital Estadual de Presidente Prudente, SP, entre 1º de março de 2005 a 30 de dezembro de 2006. Foi aplicado um questionário semi-estruturado e obtidas informações em prontuários e carteiras de pré-natal. As variáveis foram sócio-demográficas, gestacionais, assistenciais do pré-natal e específicas da população reagente. RESULTADOS: A prevalência de parturientes com HIV foi de 2,1%, com escolaridades mais baixas e médias de idade e de gestações superiores às não reagentes. Os fatores de risco associados foram a residência fora do município de tratamento e a baixa escolaridade. Houve um aumento da prevalência do HIV em parturientes em relação a dados anteriores. CONCLUSÃO: Os fatores de risco encontrados podem estar envolvidos no aumento da prevalência e no comprometimento da profilaxia pré-natal para o HIV.OBJETIVO: Determinar la prevalencia y los factores de riesgo asociados a la infección por el Virus de la Inmunodeficiencia Humana (VIH en parturientas admitidas en el Hospital Estatal de Presidente Prudente, SP. MÉTODOS: Se trata de un estudio epidemiológico transversal realizado con 873 parturientas admitidas en el Hospital Estatal de Presidente Prudente, SP, entre el 1º de marzo del 2005 al 30 de diciembre del 2006. Fue aplicado un cuestionario semi-estructurado y las informaciones obtenidas en las historias clínicas y carnets del prenatal. Las variables fueron socio-demográficas, gestacionales, asistenciales del prenatal y específicas de la población reactiva. RESULTADOS: La prevalencia de parturientas con VIH fue de 2,1%, con escolaridad más bajas y promedios de edad y de gestación superiores a las no reactivas. Los factores

  3. Avaliação nutricional em pacientes infectados pelo Vírus da Imunodeficiência Adquirida Nutritional assessment in patients infected with Human Immunodeficiency Virus

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    Rosana Mendes Reis Barbosa

    2003-12-01

    Full Text Available Pacientes infectados com o Vírus da Imunodeficiência Humana ou com Síndrome da Imunodeficiência Adquirida freqüentemente apresentam desnutrição protéico-energética, com manifestações heterogêneas, as quais dependem do estado de saúde prévio do paciente. O estado nutricional deve ser avaliado e monitorado cuidadosamente para que o plano terapêutico possa ser efetivo. Uma avaliação nutricional abrangente é fundamental; além disso, toda a equipe de profissionais da saúde e os próprios pacientes devem estar atentos para uma ação precoce e integrada.Patients infected with the Human Immunodeficiency Virus or with the Acquired Immunodeficiency Syndrome often present protein-energy malnutrition. The manifestations are heterogeneous and depend on the patient's previous health status. The nutritional status must be assessed and carefully controlled, so that satisfactory results can be achieved and the therapeutic plan can be effective. A complete detailed nutritional assessment is fundamental; besides, the health professional team and the patients themselves need to be aware of the symptoms and the disease progress, in order to take an early and integrated action.

  4. Dinâmica temporal e espacial da begomovirose causada por Tomato yellow vein streak virus em tomateiro na região de Campinas-SP Spatio-temporal pattern of a begomovirus disease caused by Tomato yellow vein streak virus in tomato in Campinas region, São Paulo

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    Marilia Gabriela Salveti Della Vecchia

    2007-12-01

    Full Text Available O objetivo desse trabalho foi caracterizar os padrões temporal e espacial do Tomato yellow vein streak virus (ToYVSV em tomatais cultivados em condições de campo, no município de Sumaré, e de estufa plástica, na região de Elias Fausto, Estado de São Paulo. No ensaio de campo, plantado com a variedade Alambra, foram avaliadas 4.032 plantas, distribuídas em oito blocos. Em oito estufas plásticas, com plantios escalonados da variedade Ikram, foram avaliadas 6.016 plantas. As avaliações foram feitas com base nos sintomas característicos induzidos por esse vírus. A confirmação da identidade do vírus foi feita por meio da análise da seqüência de nucleotídeos de parte do DNA-A viral (genes AV1 e AC3. No ensaio em condições de campo, a incidência da doença evoluiu lentamente, desde um mínimo de 0,002 (proporção de plantas sintomáticas até um máximo de 0,0497. Mesmo assim, foi possível constatar um efeito de borda, pois a incidência média de plantas doentes nos blocos situados nos bordos da área foi 2,1 vezes maior do que naqueles internos. O progresso da incidência da doença foi linear, o que indica que novas infecções foram devidas principalmente a um influxo constante de vetores virulíferos de fora para dentro da área avaliada. Nos plantios em estufas plásticas, os níveis finais de doença foram fortemente dependentes da época de plantio, com médias variando de 4,8% a 69,3%. A distribuição espacial de plantas sintomáticas nesses plantios foi fortemente agregada. Essa agregação provavelmente não se deve a infecções secundárias dentro das estufas plásticas, mas sim à concentração de plantas sintomáticas nos bordos das estufas, conseqüência da migração de vetores virulíferos a partir de áreas externas à estufa. Com base nesses resultados, sugere-se a eliminação de fontes de inóculo representadas por plantios mais velhos de tomateiro e por hospedeiras do vírus na vegetação espont

  5. Soroepidemiologia para o virus da hepatite B (VHB em gestantes/parturientes e sua transmissão para recém-nascidos em Goiânia, GO

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    Divina das Dores P. Cardoso

    1996-08-01

    Full Text Available Foram coletadas, entre março de 1990 e julho de 1992, 1459 amostras sanguíneas de mulheres gestantes/parturientes na cidade de Goiânia-GO, objetivando detecção da infecção pelo vírus da hepatite B (VHB, através dos marcadores sorológicos AgHBs e anti-HBs. O percentual depositividade encontrado, pelo teste imunoenzimãtico, foi de 7,5%, sendo 0,5%para AgHBs e 7,0%para anti-HBs. A análise efetuada, considerando a faixa etária, mostra que 7 de 8 mulheres AgHBs-positivas pertenciam à faixa etária de até 30 anos, situação semelhante em relação ao anti-HBs(83/101. Das 8 mulheres positivas, 4 tiveram seus recém-nascidos submetidos a tratamento profilático com vacina (Engerix B e imunoglobulina humana anti-hepatite B (HBIG. Além disso, 3 dessas crianças foram analisadas sorologicamente, sendo que uma era AgHBs-positiva ao nascimento. Doença sexualmente transmissível e transfusão sanguínea foram fatores de risco que coirelacionaram significantemente com a infecção. Esses resultados parece-nos reforçar a indicação de triagem à infecção pelo vírus da hepatite B no período pré-natal, assim como a adoção de medidas imunoprofiláticas nas crianças nascidas de mães positivas.In order to detect hepatitis B vírus (HBV, 1459 serum samples from pregnant/parturient women were collected at two public hospitals in Goiânia, GO. These samples were tested by enzyme linked immunosorbent assay forHBsAg and anti-HBs. 109 (7.5% serum samples were positive. Eight (0.5% sera were positive for HBsAg and 101 (7.0% for anti-HBs. Viral positivity for both HBsAg and anti- HBs were observed in women which age ranged from 15 to 30 years. Four newborns from HBsAg positive mothers were submitted to the treatment with HBV vaccine (Engerix B and with hyperimmune gammaglobulin (HBIG - Abbott Laboratories - Brazil. Cord blood from one of the newborns was positive for HBsAg. A positive association was found between hepatitis B and sexually

  6. Prevalence and genetic diversity of fig mosaic virus isolates infecting fig tree in Iran.

    Science.gov (United States)

    Danesh-Amuz, S; Rakhshandehroo, F; Rezaee, S

    2014-01-01

    Commercial and outdoor fig orchards in four Iranian provinces were surveyed for the incidence of fig mosaic virus (FMV), fig leaf mottle associated virus 2 (FLMaV-2) and fig mild mottle associated virus (FMMaV) from March 2011 to October 2012. A total of 350 asymptomatic and symptomatic fig samples were collected and tested by dot-immunobinding assay (DIBA) for the fig mosaic disease (FMD) using a polyclonal antiserum. According to DIBA results, FMD was present in 73% of the collected symptomatic samples from all visited regions. Samples with positive reactions in DIBA were then analyzed by RT-PCR using with specific primers. PCR results showed that about 14.8% of the FMD-positive samples from three inspected provinces are infected with at least one virus. FMV was the most widely spread virus (14%) followed by FLMaV-2 (1.5%), whereas FMMaV was not found. Phylogenetic analysis of the glycoprotein nucleotide and amino acid sequences of known FMV isolates showed two independent groups with high bootstrap values, with all Iranian isolates distinctly clustered in group I, subgroup IA beside those reported in Turkey. Nucleotide diversity was high within but low between different selected geographic regions and except for Europe, nucleotide distance within geographic regions was low. Statistical analyses indicated a correlation between the genetic structure of the FMV isolates and the geographical origin of isolation. Our analyses suggested that the FMV population is in a state of increase following a bottleneck or founder event in Iran.

  7. Monitoring bovine viral diarrhea virus (BVDV infection status in dairy herds Monitoramento do estado de infecção pelo vírus da diarrhéia viral bovina (BVDV em rebanhos bovinos leiteiros

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    Francisco J. Diéguez

    2008-12-01

    Full Text Available This study was designed to assess the relationship between antibodies against bovine viral diarrhea virus (BVDV determined in the bulk tank milk (BTM and the within-herd seroprevalence. We also assessed the efficiency of measuring antibody levels in BTM samples to monitor BVDV infection status in a herd. In the 81 farms included in the study, BTM samples were obtained and blood samples withdrawn from all cattle older than one year. The infection status was then determined in serum and milk using a commercial blocking ELISA based on the detection of anti-p80 antibodies. Apart from these baseline serum and milk samples, another BTM sample was collected from each herd 9 months later, and a third BTM sample obtained 9 months after this. In these second and third milk samples, anti-BVDV antibodies were determined using the same ELISA kit. Statistical tests revealed good agreement between herd seroprevalences (% seropositive animals in the herd and the antibody levels detected in the BTM samples. During the 18 months of follow-up, the farms with persistently infected cattle at the study outset (14.8% of the herds showed a significant decrease in BTM antibody titers after virus clearance. Conversely, a significant increase in BTM antibody levels was observed in the herds infected with BVDV during the follow-up period. Our findings indicate that monitoring antibody levels in the BTM is a useful method of identifying changes in the BVDV infection status of a herd.Os objetivos do presente estudo foram avaliar a relação entre os níveis de anticorpos frente ao vírus da diarréia viral bovina (BVDV no tanque de leite e a prevalência de animais seropositivos em cada rebanho; e também avaliar a eficiência da medição dos níveis de anticorpos no tanque de leite como método de monitoramento do status de infecção frente ao BVDV. Nos rebanhos estudados, obtiveram-se amostras de soro de todos os animais com idade superior a um ano, assim como uma

  8. Conservazione e gestione della Lepre italica (<em>Lepus corsicanusem>

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    Francesco Riga

    2003-10-01

    ecologica, sia per la diffusione di gravi patologie comuni. È stata, infatti, accertata in <em>L. corsicanusem> la letalità del virus dell?E.B.H.S., di cui la Lepre europea si rivela il <em>reservoir> naturale. La mancanza di esemplari con fenotipi intermedi tra <em>L. corsicanusem> e <em>L. europaeusem> e l?assenza di introgressione di aplotipi mitocondriali tra le due specie, portano ad escludere il rischio di ibridazione. L?esercizio venatorio può rappresentare un reale fattore limitante per le popolazioni di <em>L. corsicanusem> (benché la specie non sia legalmente cacciabile a causa delle difficoltà di discriminazione sul campo con <em>L. europaeusem> (cacciabile. La conservazione delle popolazioni di <em>L. corsicanusem> richiede la realizzazione sul territorio di una idonea rete coordinata di aree protette, sulla base di modelli di vocazionalità dell?ambiente, al fine di consolidare le popolazioni esistenti e pianificare gli interventi di reintroduzione. Altre misure prioritarie sono: il corretto inquadramento giuridico del <em>taxon>, anche a livello internazionale, l?adeguamento dei piani faunistici regionali e locali, il divieto di introduzione della lepre europea nell?areale storico della lepre italica, il miglioramento della gestione venatoria delle lepri, la realizzazione di aree faunistiche per fini di studio e di reintroduzione e un?opera di divulgazione delle conoscenze e dell?importanza conservazionistica della specie.

  9. ECHO virus

    Science.gov (United States)

    ... page: //medlineplus.gov/ency/article/001340.htm ECHO virus To use the sharing features on this page, please enable JavaScript. Enteric cytopathic human orphan (ECHO) viruses are a group of viruses that lead to ...

  10. Coupling Peptide Antigens to Virus-Like Particles or to Protein Carriers Influences the Th1/Th2 Polarity of the Resulting Immune Response

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    Rattanaruji Pomwised

    2016-05-01

    Full Text Available We have conjugated the S9 peptide, a mimic of the group B streptococcal type III capsular polysaccharide, to different carriers in an effort to elicit an optimal immune response. As carriers, we utilized the soluble protein keyhole limpet hemocyanin and virus-like particles (VLPs from two plant viruses, Cowpea Chlorotic Mottle Virus and Cowpea Mosaic Virus. We have found that coupling the peptide to the soluble protein elicits a Th2 immune response, as evidenced by the production of the peptide-specific IgG1 antibody and IL-4/IL-10 production in response to antigen stimulation, whereas the peptide conjugated to VLPs elicited a Th1 response (IgG2a, IFN-γ. Because the VLPs used as carriers package RNA during the assembly process, we hypothesize that this effect may result from the presence of nucleic acid in the immunogen, which affects the Th1/Th2 polarity of the response.

  11. Seroprevalence for hepatitis E virus (HEV infection among volunteer blood donors of the Regional Blood Bank of Londrina, State of Paraná , Brazil Soroprevalência da infecção pelo virus da hepatite E (VHE em candidatos a doadores de sangue voluntários do Hemocentro Regional de Londrina, Londrina, Estado do Paraná, Brasil

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    André Luiz Bortoliero

    2006-04-01

    Full Text Available A cross-sectional study was carried out among 996 volunteer blood donors enrolled from May 1999 to December 1999 to determine the seroprevalence of hepatitis E virus (HEV infection among volunteer blood donors of the Regional Blood Bank of Londrina, State of Paraná, Brazil, and to evaluate whether the rate of seroprevalence of IgG anti-HEV antibodies is associated with sociodemographic variables and with seropositivity for hepatitis A virus (HAV infection. All participants answered the questionnaire regarding the sociodemographic characterisitcs. Serum samples were tested for IgG antibodies to HEV (anti-HEV by an enzyme linked immunoassay (ELISA. All serum samples positive for anti-HEV IgG and 237 serum samples negative for anti-HEV were also assayed for IgG anti-HAV antibodies by ELISA. Anti-HEV IgG was confirmed in 23/996 samples, resulting in a seroprevalence of 2.3% for HEV infection, similar to previous results obtained in developed countries. No significant association was found between the presence of anti-HEV IgG antibodies and the sociodemographic variables including gender, age, educational level, rural or urban areas, source of water, and sewer system (p > 0.05. Also, no association with seropositivity for anti-HAV IgG antibodies was observed (p > 0.05. Although this study revealed a low seroprevalence of HEV infection in the population evaluated, the results showed that this virus is circulating among the population from Londrina, South Brazil, and point out the need of further studies to define the clinical and epidemiological importance of HEV infection and to identify additional risk factors involved in the epidemiology and pathogenesis of this infection in this population.Os objetivos do estudo foram determinar a soroprevalência da infecção pelo vírus da hepatite E (VHE em candidatos a doadores de sangue voluntários do Hemocentro Regional de Londrina, Paraná, e avaliar se essa soroprevalência está associada com vari

  12. Reverse Transcription Polymerase Chain Reaction-based System for Simultaneous Detection of Multiple Lily-infecting Viruses

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    Ji Yeon Kwon

    2013-09-01

    Full Text Available A detection system based on a multiplex reverse transcription (RT polymerase chain reaction (PCR was developed to simultaneously identify multiple viruses in the lily plant. The most common viruses infecting lily plants are the cucumber mosaic virus (CMV, lily mottle virus (LMoV, lily symptomless virus (LSV. Leaf samples were collected at lily-cultivation facilities located in the Kangwon province of Korea and used to evaluate the detection system. Simplex and multiplex RT-PCR were performed using virus-specific primers to detect single-or mixed viral infections in lily plants. Our results demonstrate the selective detection of 3 different viruses (CMV, LMoV and LSV by using specific primers as well as the potential of simultaneously detecting 2 or 3 different viruses in lily plants with mixed infections. Three sets of primers for each target virus, and one set of internal control primers were used to evaluate the detection system for efficiency, reliability, and reproducibility.

  13. Simultaneous detection and identification of four cherry viruses by two step multiplex RT-PCR with an internal control of plant nad5 mRNA.

    Science.gov (United States)

    Noorani, Md Salik; Awasthi, Prachi; Sharma, Maheshwar Prasad; Ram, Raja; Zaidi, Aijaz Asgar; Hallan, Vipin

    2013-10-01

    A multiplex reverse transcription-polymerase chain reaction (mRT-PCR) was developed and standardized for the simultaneous detection of four cherry viruses: Cherry virus A (CVA, Genus; Capillovirus), Cherry necrotic rusty mottle virus (CNRMV, unassigned species of the Betaflexiviridae), Little cherry virus 1 (LChV-1, Genus; Closterovirus) and Prunus necrotic ringspot virus (PNRSV, Genus; Ilarvirus) with nad5 as plant internal control. A reliable and quick method for total plant RNA extraction from pome and stone fruit trees was also developed. To minimize primer dimer formation, a single antisense primer for CVA and CNRMV was used. A mixture of random hexamer and oligo (dT) primer was used for cDNA synthesis, which was highly suited and economic for multiplexing. All four viruses were detected successfully by mRT-PCR in artificially created viral RNA mixture and field samples of sweet cherry. The identity of the viruses was confirmed by sequencing. The assay could detect above viruses in diluted cDNA (10(-4)) and RNA (10(-3), except PNRSV which was detected only till ten times lesser dilution). The developed mRT-PCR will not only be useful for the detection of viruses from single or multiple infections of sweet cherry plants but also for other stone and pome fruits. The developed method will be therefore quite helpful for virus indexing, plant quarantine and certification programs. This is the first report for the simultaneous detection of four cherry viruses by mRT-PCR.

  14. Comparison of direct immunofluorescence, conventional cell culture and polymerase chain reaction techniques for detecting respiratory syncytial virus in nasopharyngeal aspirates from infants Comparação entre imunofluorescência direta, cultura convencional de células e reação em cadeia de polimerase para detectar vírus respiratório sincicial em lavados de nasofaringe de crianças

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    Alexanda Dias Reis

    2008-02-01

    Full Text Available A total of 316 samples of nasopharyngeal aspirate from infants up to two years of age with acute respiratory-tract illnesses were processed for detection of respiratory syncytial virus (RSV using three different techniques: viral isolation, direct immunofluorescence, and PCR. Of the samples, 36 (11.4% were positive for RSV, considering the three techniques. PCR was the most sensitive technique, providing positive findings in 35/316 (11.1% of the samples, followed by direct immunofluorescence (25/316, 7.9% and viral isolation (20/315, 6.3% (p Um total de 316 amostras de lavado de nasofaringe obtidas de crianças em acompanhamento ambulatorial com até dois anos de idade durante episódio de doença aguda do trato respiratório foram processadas para detecção do vírus sincicial respiratório (VSR utilizando três diferentes técnicas: isolamento viral, imunofluorescência direta e reação em cadeia por polimerase (RT-PCR. Destas amostras, 36 (11,4% foram positivas para o VSR. A RT-PCR foi a técnica mais sensível, com positividade em 35 (11,1% das amostras, seguindo-se a imunofluorescência direta (25/316, 7,9% e o isolamento viral (20/315, 6,3% (p < 0,001. Uma amostra foi positiva pela imunofluorescência e negativa pela RT-PCR, e 11/36 (31,4% foram positivas somente pela RT-PCR. Concluímos que a RT-PCR é mais sensível que a imunofluorescência e o isolamento viral para detecção do VRS em amostras de aspirado de nasofaringe de recém-nascidos e lactentes.

  15. Padronização da técnica de imunoperoxidase para detecção do vírus da diarréia bovina a vírus em cultura de células: Standardization of immunoperoxidase test to detection bovine viral diarrhea virus in cell culture

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    G.I. Andrade

    2002-12-01

    Full Text Available Este estudo teve como objetivo a padronização do ensaio de imunoperoxidase em monocamada de células (IPM para o diagnóstico etiológico da diarréia bovina a vírus (DBV. O teste foi padronizado em monocamada de cultivo primário de pulmão fetal bovino (PFB inoculada com as amostras clássicas, citopatogênica (CP e não citopatogênica (NCP, do vírus da DBV e testado em amostras biológicas suspeitas processadas no teste clássico de isolamento viral (IV. O método de IPM identificou o vírus da DBV, apresentando melhores resultados com a utilização do calor como agente fixador, a soroalbumina bovina a 4% em PBS como bloqueador e a revelação com o cromógeno 3-amino-9-etil-carbazol (AEC. Como anticorpos primários, tanto o anticorpo policlonal como o monoclonal forneceram bons resultados.The aim of this study was to standardize the immunoperoxidase in cell monolayer assay (IPMA for the etiological diagnosis of bovine viral diarrhea (BVD. The method was standardized in monolayer of primary bovine fetal lung culture inoculated with cytophatic and non-cytophatic classical strains of BVD virus and tested using samples that were considered suspected in the classical technique of viral isolation. The IPMA successfully identified BVD virus and presented better results when heat was used for fixation, BSA 4% solution in PBS was used for blocking and AEC chromogen was used for revelation. Both monoclonal and polycloral antibodies gave good results when used as primary antibodies.

  16. Caracterização de amostras atenuadas do vírus da Diarréia Viral Bovina (BVDV tipos 1 e 2 para uso em vacinas Characterization of bovine viral diarrhea virus (BVDV types 1 and 2 isolates for use in vaccines

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    Marcelo de Lima

    2004-03-01

    (6,8 DICC50. A revacinação induziu uma resposta secundária na maioria dos animais, resultando em um aumento dos títulos de anticorpos neutralizantes principalmente frente ao BVDV-2. Esses resultados são promissores no sentido da utilização dessas amostras na formulação de vacinas atenuadas para o controle da infecção pelo BVDV no Brasil.This article reports the characterization of two cytopathic isolates of bovine viral diarrhea virus (BVDV-1: IBSP-2; BVDV-2:SV-253 submitted to multiple passages (n=30 in tissue culture associated with ultraviolet irradiation. The vaccine candidate strains were characterized in vitro (plaque size and morphology, growth kinetics and antigenic profile and in vivo (attenuation and serological response in calves. In vitro characterization of biologically cloned viruses obtained at passages 0, 1, 10, 20 and 30 demonstrated that the attenuation process did not significantly affect the phenotypic and antigenic properties of the viruses. No major differences in plaque size and morphology and in the growth kinetics in tissue culture were observed among the viruses obtained at different passages. Likewise, the antigenic profile of these viruses did not change upon successive passages in tissue culture, as ascertained by the pattern of binding by 48 monoclonal antibodies (mAbs. Intramuscular inoculation of both viruses (IBSP-2: 10(7.3 TCID50; SV-253: 10(6.8 TCID50 at passage 30 (p30 in twelve 15 months old heifers did not produce clinical signs, demonstrating the attenuation of the viruses. Following inoculation, infectious virus was detected in leucocytes of most inoculated animals (10/12 between days 3 and 6 post-inoculation (pi and in nasal secretions of three animals (days 4, 7 and 8pi. However, the vaccine viruses were not transmitted to three seronegative calves maintained as sentinels. All vaccinated calves seroconverted at day 14 post-vaccination. A moderate to high serum neutralizing response against five Brazilian BVDV-1 (titers

  17. Detecção e tipagem de vírus dengue em Aedes aegypti (Diptera: Culicidae na Cidade de Manaus, Estado do Amazonas Detection and typing of dengue viruses in Aedes aegypti (Diptera: Culicidae in the City of Manaus, State of Amazonas

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    Cristóvão Alves da Costa

    2009-12-01

    Full Text Available O estudo teve por objetivo a detecção e tipagem do vírus dengue, nos vetores Aedes aegypti. Durante o período de dezembro de 2005 a dezembro de 2006, foram coletados 8.984 mosquitos, em 46 bairros da Cidade de Manaus abrangendo todas as zonas geográficas da cidade. Destes, 819 eram Aedes aegypti (414 fêmeas e 405 machos. As fêmeas de Aedes aegypti foram agrupadas em pools de 1 a 10 mosquitos totalizando 138 pools, sendo que 111 pools foram positivos para DENV 3. Porém, um pool mostrou-se positivo para dois sorotipos, DENV 1 e DENV 3. A prevalência de Aedes aegypti infectados com DENV 3, na Cidade de Manaus foi de 53%. Entretanto, a prevalência por zona foi de 70% no Centro-oeste, 60% no Sul, 53% no Oeste, 47% no Centro-Sul, 30% no Norte e 23% na zona Leste. O monitoramento da circulação viral em mosquitos com o uso da técnica da transcrição reversa-reação da polimerase em cadeia que permite o conhecimento prévio dos níveis de disseminação viral em determinadas áreas contribuindo para determinar os locais para aplicar as medidas de prevenção e controle.The aim of this study was to detect and type dengue viruses in the vector Aedes aegypti. Between December 2005 and December 2006, 8,984 mosquitoes were collected in 46 districts of the city of Manaus, covering all of the geographical zones of the city. Of these, 819 were Aedes aegypti (414 females and 405 males. The females of Aedes aegypti were grouped in pools of 1 to 10 mosquitoes, thus totaling 138 pools, of which 111 pools were positive for DENV 3 and a single pool was positive for two serotypes (DENV 1 and DENV 3. The prevalence of Aedes aegypti infected with DENV 3 in the city of Manaus was 53%. The zonal prevalence was 70% in the western central zone, 60% in the southern zone, 53% in the western zone, 47% in the southern central zone, 30% in the northern zone and 23% in the eastern zone. Monitoring of virus circulation among mosquitoes by means of the reverse

  18. Mixed Infections of Four Viruses, the Incidence and Phylogenetic Relationships of Sweet Potato Chlorotic Fleck Virus (Betaflexiviridae) Isolates in Wild Species and Sweetpotatoes in Uganda and Evidence of Distinct Isolates in East Africa

    Science.gov (United States)

    Tugume, Arthur K.; Mukasa, Settumba B.; Valkonen, Jari P. T.

    2016-01-01

    Viruses infecting wild flora may have a significant negative impact on nearby crops, and vice-versa. Only limited information is available on wild species able to host economically important viruses that infect sweetpotatoes (Ipomoea batatas). In this study, Sweet potato chlorotic fleck virus (SPCFV; Carlavirus, Betaflexiviridae) and Sweet potato chlorotic stunt virus (SPCSV; Crinivirus, Closteroviridae) were surveyed in wild plants of family Convolvulaceae (genera Astripomoea, Ipomoea, Hewittia and Lepistemon) in Uganda. Plants belonging to 26 wild species, including annuals, biannuals and perennials from four agro-ecological zones, were observed for virus-like symptoms in 2004 and 2007 and sampled for virus testing. SPCFV was detected in 84 (2.9%) of 2864 plants tested from 17 species. SPCSV was detected in 66 (5.4%) of the 1224 plants from 12 species sampled in 2007. Some SPCSV-infected plants were also infected with Sweet potato feathery mottle virus (SPFMV; Potyvirus, Potyviridae; 1.3%), Sweet potato mild mottle virus (SPMMV; Ipomovirus, Potyviridae; 0.5%) or both (0.4%), but none of these three viruses were detected in SPCFV-infected plants. Co-infection of SPFMV with SPMMV was detected in 1.2% of plants sampled. Virus-like symptoms were observed in 367 wild plants (12.8%), of which 42 plants (11.4%) were negative for the viruses tested. Almost all (92.4%) the 419 sweetpotato plants sampled from fields close to the tested wild plants displayed virus-like symptoms, and 87.1% were infected with one or more of the four viruses. Phylogenetic and evolutionary analyses of the 3′-proximal genomic region of SPCFV, including the silencing suppressor (NaBP)- and coat protein (CP)-coding regions implicated strong purifying selection on the CP and NaBP, and that the SPCFV strains from East Africa are distinguishable from those from other continents. However, the strains from wild species and sweetpotato were indistinguishable, suggesting reciprocal movement of SPCFV

  19. Resistance breaking tomato spotted wilt virus isolates on resistant pepper varieties in Italy.

    Science.gov (United States)

    Crescenzi, A; Viggiano, A; Fanigliulo, A

    2013-01-01

    In spring 2012, resistance breaking (RB) isolates of tomato spotted wilt virus (TSWV) that overcome the resistance conferred by the Tsw gene in different pepper hybrids have been recovered in different locations in southern Italy (Campania and Apulia regions) in protected cultivation, about one month after transplant. The percentage of symptomatic plants was 5-10% and, only in particular cases of advanced stage of cultivation, it reached 30-50% at the end of cycle. All TSWV isolates induced similar systemic symptoms in all resistant infected pepper hybrids: yellowing or browning of apical leaves, which later become necrotic, long necrotic streakson stems, extending to the terminal shoots, complete necrosis of younger fruits and large necrotic streaks and spots on fruits formed after infection. On ripe fruits, yellow spots with concentric rings or necrotic streaks could be observed. Leaf extracts of these samples were tested in ELISA for the detection of TSWV, Cucumber mosaic virus (CMV), Tobacco mosaic virus (TMV), Tomato mosaic virus (ToMV), Impatiens necrotic spot virus (INSV), Potato virus Y (PVY), Alfalfa mosaic virus (AMV), Pepper mild mottle virus (PMMoV) and Pepper Mottle Virus (PepMoV). Only TSWV was detected in all the field samples tested. The correspondent virus isolates were inoculated mechanically and by Frankliniella occidentalis on to a set of different pepper and tomato hybrids, as well as on some herbaceous test plants, in order to investigate for their ability to overcome the resistance genes Tsw and Sw5, respectively. Tomato hybrids carrying the Sw5 gene were uninfected by all RB isolates, whereas all resistant pepper hybrids became systemically infected. RB isolates did not differ noticeably in transmission efficiency when they were tested with the thrips F. occidentalis. Obtained results demonstrate that evolved strains of TSWV have emerged, that they are able to overcome the Tsw resistance gene in pepper plants experimentally inoculated both

  20. Counseling blood donors seropositive for human T-lymphotropic virus types I and II in a developing country Aconselhando o doador de sangue soropositivo para o Vírus Linfotrópico Humano tipo I/II em um país em desenvolvimento

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    Valéria M. A. Passos

    1998-04-01

    Full Text Available Human T-lymphotropic virus types I and II (HTLV-I/II are blood-transmitted retroviruses associated with leukemia, myelopathy, and uveitis. From 51,135 eligible blood donors at the Fundação Hemominas tested in 1993, 689 (1.35% were repeatedly reactive to HTLV-I/II antibodies by enzyme immunoassay and were notified accordingly. Routes of transmission and preventive measures were emphasized in the orientation. Supplementary laboratory tests should be available and free of cost. Health services should recommend the use of latex condoms and make them available. Avoiding shared use of needles or syringes is important for both the seropositive donor and public health in general. In a country with such widespread malnutrition, the benefits of breast-feeding usually outweigh the risks of virus transmission. Based on our experience, we recommend that: 1 identical orientation be given to donors by all health professionals involved in counseling; 2 level of schooling be considered and information provided accordingly; 3 donors be assisted in understanding and assessing available information; 4 psychological assistance be provided to anxious or depressed donors; and 5 joint counseling be offered to donors with stable partners.Os vírus linfotrópico humano tipos I e II (HTLV-I/II são retrovírus transmitidos por componentes celulares sanguíneos e associados à ocorrência de leucemia, mielopatia e uveíte. De 51.135 doadores de sangue da Fundação Hemominas testados em 1993, 689 (1,35% foram repetidamente reativos a anticorpos contra HTLV-I/II no ensaio imunoenzimático e foram devidamente notificados. As vias de transmissão e medidas de controle foram enfatizadas na orientação. Testes laboratoriais suplementares devem ser disponíveis e gratuitos. O uso de preservativos deve ser recomendado e os mesmos serem disponíveis nos serviços de saúde. O doador soropositivo e os serviços de saúde não devem reutilizar agulhas e seringas. Sendo a desnutri

  1. Risk factors and prevalence of antibodies against hepatitis A virus (HAV in children from day-care centers, in Goiania, Brazil Fatores de risco e prevalência de anticorpos contra o vírus da hepatite A (VHA em crianças de creche em Goiânia, Brasil

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    D.A.O. Queiróz

    1995-10-01

    Full Text Available A seroepidemiologic survey about hepatitis A virus (HAV infection was carried out in a group comprising 310 children, ranging in age from 3 months to 9 years, from day-care centers, in Goiania, a middle sized city in the central region of Brazil. The biomarkers employed in the investigation of previous infection include total IgG and IgM anti-HAV antibodies, and for the detection of more recent infection, IgM anti-HAV antibodies were analyzed. The study was performed in 1991 and 1992. According to the results, 69.7% of the children presented total IgG/IgM anti-HAV antibodies, with 60% of the group in the age range of 1 to 3 years. Among 10 day-care centers analyzed, the prevalence of the biomarker IgM anti-HAV was 3.2%, with an uniform distribution of the cases in the group of children ranging in age from 1 to 4 years. Multi-variate analysis was performed to investigate the sociodemographic factors that could influence the results. It was verified that the risk for the infection increased with the length of the attendance in the day-care centers, i.e., the risk for children with attendance of one year or more was 4.7 times higher, when compared with children with one month attendance (CI 95% 2.3-9.9. According to the results, hepatitis A is an endemic infection in day-care centers in the study area. The length of attendance in the day-care settings was demonstrated to be a risk factor for the HAV infection. Such findings suggest that if hepatits A vaccination becomes available as a routine policy in our region, the target group should be children under one year. Moreover, those children should receive the vaccine before they start to attend the day-care centers.Um estudo soroepidemiológico para o vírus da hepatite A (VHA, investigando os marcadores de infecção passada (anti-VHA total - IgG e IgM e infecção recente (anti-VHA IgM, foi realizado entre 1991 e 1992, em crianças de creche de Goiânia-Brasil central. Das 310 crianças com idade

  2. Prevalência e diversidade genética do torque teno vírus em pacientes com lúpus eritematoso sistêmico em serviço de referência no Mato Grosso do Sul Prevalence and genetic diversity of torque teno virus in patients with systemic lupus erythematosus in a reference service in Mato Grosso do Sul

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    Márcio Reis da Costa

    2012-02-01

    Full Text Available Estudos recentes sobre o torque teno vírus (TTV, gênero Anellovirus, permitiram construir a hipótese de que esse vírus pode ser um desencadeante ou tenha algum papel patogênico nas doenças reumáticas autoimunes. OBJETIVOS: Verificar a frequência da infecção pelo TTV em pacientes com lúpus eritematoso sistêmico (LES, e sua diversidade gênica, a existência de correlação entre a infecção pelo TTV e as manifestações clínicas do LES, sua evolução clínica e o perfil sorológico. PACIENTES E MÉTODOS: Foram obtidas 46 amostras de soro de pacientes com LES atendidos no Ambulatório de Reumatologia do Hospital Universitário de Campo Grande (NHU/FAMED/UFMS. Para os controles, utilizaram-se 46 amostras de soro de doadores de sangue. O DNA viral foi extraído das amostras utilizando o QIAamp DNA Blood Mini Kit (QIAGEN, Hilden, Alemanha, e amplificado utilizando a técnica de nested PCR. RESULTADOS: Foi encontrada positividade para o TTV em 17 (37% dos pacientes lúpicos, e em apenas sete (15,2% dos controles (teste z, P = 0,03. Não houve correlação entre a infecção pelo TTV, as manifestações clínicas, o perfil sorológico e a evolução clínica dos pacientes avaliados neste estudo. CONCLUSÃO: A presença do TTV nos pacientes com LES necessita ser mais bem compreendida a partir deste estudo inicialRecent studies on the torque teno virus (TTV, genus Anellovirus, have allowed formulating the hypothesis that TTV may trigger autoimmune rheumatic diseases or have some pathogenic role in them. OBJECTIVES: To determine the frequency of TTV infection in patients with systemic lupus erythematosus (SLE, the genetic diversity of TTV, the correlation between TTV infection and SLE clinical manifestations, and SLE clinical course and serological profile. PATIENTS AND METHODS:Serum samples were obtained from 46 SLE patients treated at the University-Affiliated Hospital of Campo Grande (NHU/FAMED/UFMS, Brazil. For controls, serum samples

  3. Proteção fetal frente a desafio com o vírus da Diarréia Viral Bovina (BVDV em ovelhas imunizadas com duas amostras de vírus modificadas experimentalmente Fetal protection against challenge with bovine viral diarrhea virus (BVDV in pregnant ewes immunized with two strains experimentally attenuated

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    Mário C.S. Brum

    2002-04-01

    Full Text Available Duas amostras do vírus da Diarréia Viral Bovina (BVDV submetidas a múltiplas passagens em cultivo celular e exposição à radiação ultravioleta (UV a cada passagem foram avaliadas como candidatos a vírus vacinais. As amostras foram testadas quanto à sua atenuação para bezerros e fetos ovinos, reatividade antigênica contra isolados de campo, e capacidade de induzir proteção fetal em ovelhas prenhes. Inoculação intramuscular (IM dos vírus modificados em quatro bezerros produziu apenas uma elevação discreta e passageira da temperatura corporal, seguida de produção de altos títulos de anticorpos neutralizantes. O vírus não foi detectado em secreções nasais ou sangue nos dias seguintes à inoculação. Porém, a inoculação IM desses vírus em quatro ovelhas prenhes foi seguida de transmissão transplacentária e infecção em todos os fetos. Para os testes de proteção fetal, ovelhas prenhes previamente imunizadas com duas doses vacinais, foram inoculadas por via intranasal com amostras de BVDV-1 (SV-126.8, n=6 ou BVDV-2 (SV-260, n=5. No dia do desafio (134 dias após a segunda dose, todos os animais apresentavam altos títulos de anticorpos neutralizantes (256 a >4096 contra os vírus vacinais; além de títulos variados (8 a >4096 contra várias isolados brasileiros de BVDV-1 e BVDV-2. Quinze dias após o desafio, as ovelhas foram sacrificadas e os tecidos fetais foram examinados para a presença de vírus. Todos os fetos das ovelhas controle não-vacinadas apresentaram-se (n=4 positivos para os vírus utilizados no desafio. Em contraste, nenhum feto das ovelhas imunizadas (n=11 foi positivo para vírus, indicando que a resposta imunológica induzida pela vacinação com os vírus modificados foi capaz de prevenir a infecção fetal. Estes resultados indicam que é possível obter-se forte resposta imunológica e proteção fetal contra o BVDV com o uso de vacinas vivas modificadas.Two isolates of bovine viral diarrhea

  4. Epstein-Barr virus in oral hairy leukoplakia scrapes: identification by PCR Vírus Epstein-Barr em esfregaço de leucoplasia pilosa oral: identificação por PCR

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    Tatiana Lucianelli Komatsu

    2005-12-01

    Full Text Available Oral hairy leukoplakia (OHL is a lesion associated with a compromised immune system, and its diagnosis is determined by the demonstration of the presence of Epstein-Barr virus (EBV in lesional tissue. The purpose of this article was to develop a simple technique to help the diagnosis of OHL, using PCR as an alternative technique to evidence EBV in scrapings. DNA samples were obtained by scraping the lateral border of the tongue of 38 adult patients: 29 HIV-positive patients (4 with clinical evidence of OHL; 4 with history of OHL, but without lesion at the moment the samples were collected; and 21 without clinical evidence of OHL, and 9 healthy volunteers for the control group. DNA was extracted from scrapes and amplified by PCR using specific primers for EBV. Of the 29 cases of HIV-positive patients, 22 (75.86% were positive for EBV: 2 patients with clinical evidence of OHL, 4 patients with history of OHL, but without lesion at the moment the samples were collected, and 16 patients without clinical evidence of OHL. In the control group, samples of 5 (55.56% healthy volunteers presented amplification for EBV. We concluded that the use of PCR in oral scrapes suggests a high sensitivity but low specificity for the diagnosis of OHL.A leucoplasia pilosa (LP é uma lesão associada ao comprometimento do sistema imune e seu diagnóstico é determinado pela demonstração da presença do vírus Epstein-Barr (EBV no tecido lesionado. O objetivo deste trabalho foi desenvolver uma metodologia simples para auxiliar no diagnóstico da LP, utilizando-se a técnica da PCR como uma alternativa para evidenciar o EBV em esfregaços da lesão. Amostras de DNA foram obtidas por meio de raspado de borda lateral de língua, de 38 pacientes adultos, sendo estes: 29 pacientes HIV positivos (4 com evidência clínica de leucoplasia pilosa, 4 que haviam apresentado LP previamente, mas não no momento da coleta, e 21 sem evidência clínica de leucoplasia pilosa e 9

  5. Estimativas de custo da hepatite crônica B no sistema único de saúde Brasileiro em 2005 Cost estimates of chronic hepatitis B virus for the Brazilian unified health system in 2005

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    Adauto Castelo

    2007-01-01

    Full Text Available OBJETIVO: O objetivo deste estudo foi estimar o padrão de tratamento, a utilização de recursos e os gastos para cada estágio da HCVB, no ambiente do Sistema Único de Saúde (SUS do Brasil, no ano 2005. MÉTODOS: Foi desenvolvido painel Delphi de especialistas para obter informação sobre o padrão de tratamento da HCVB no Brasil. Os dados foram coletados com dez médicos especialistas em hepatologia e doenças infecciosas. A valoração dos recursos foi obtida predominantemente das tabelas de pagamentos do Sistema Único de Saúde e tabelas de preços de medicamentos. As estimativas de custo tiveram a perspectiva do pagador público. Os dados foram analisados estatisticamente pelo programa SPSS 12.0 para Windows. RESULTADOS: Os gastos estimados dos pacientes foram separados em cada estágio da HCVB. O gasto estimado anual por paciente foi: R$ 980,89 para hepatite B crônica, sem cirrose e sem tratamento antiviral; R$ 1.243,17 para cirrose compensada sem tratamento antiviral; R$ 22.022,61 para cirrose descompensada; R$ 4.764,95 para o carcinoma hepatocelular; e R$ 87.372,60 para o transplante hepático. CONCLUSÃO: Os gastos estimados com procedimentos e medicamentos, excluindo antivirais, representaram os principais componentes do gasto da HCVB. Neste modelo, os gastos aumentam dramaticamente nos estágios mais avançados, sugerindo que retardar a progressão da doença poderá reduzir o gasto no longo prazo.BACKGROUD: Chronic Hepatitis B Virus (CHBV is a disease that places a large financial burden on healthcare systems and society. OBJECTIVE: The aim of this study was to estimate patient management patterns, and associated medical resource utilization and expenses, for each of the four stages of chronic HBV infection in the public unified healthcare system settings, in 2005. METHODS. An expert panel comprised of ten physicians, leading specialists in hepathology and infectious diseases, was convened to obtain information regarding

  6. Simultaneous detection of three lily viruses using Triplex IC-RT-PCR.

    Science.gov (United States)

    Zhang, Yubao; Wang, Yajun; Xie, Zhongkui; Yang, Guo; Guo, Zhihong; Wang, Le

    2017-08-25

    Viruses commonly infecting lily (Lilium spp.) include: Lily symptomless virus (LSV), Cucumber mosaic virus (CMV) and Lily mottle virus (LMoV). These viruses usually co-infect lilies causing severe economic losses in terms of quantity and quality of flower and bulb production around the world. Reliable and precise detection systems need to be developed for virus identification. We describe the development of a triplex immunocapture (IC) reverse transcription (RT) polymerase chain reaction (PCR) assay for the simultaneous detection of LSV, CMV and LMoV. The triplex IC-RT-PCR was compared with a quadruplex RT-PCR assay. Relative to the quadruplex RT-PCR, the specificity of the triplex IC-RT-PCR system for LSV, CMV and LMoV was 100% for field samples. The sensitivity of the triplex IC-RT-PCR system was 99.4%, 81.4% and 98.7% for LSV, CMV and LMoV, respectively. Agreement (κ) between the results obtained from the two tests was 0.968, 0.844 and 0.984 for LSV, CMV and LMoV, respectively. This is the first report of the simultaneous detection of LSV, CMV and LMoV in a triplex IC-RT-PCR assay. In particular we believe this convenient and reliable triplex IC-RT-PCR method could be used routinely for large-scale field surveys or crop health monitoring of lily. Copyright © 2017. Published by Elsevier B.V.

  7. Preliminary X-ray Data Analysis of Crystalline Hibiscus Chlorotic Ringspot Virus

    Energy Technology Data Exchange (ETDEWEB)

    Cheng, A.; Speir, J; Yuan, Y; Johnson, J; Wong, S

    2009-01-01

    Hibiscus chlorotic ringspot virus (HCRSV) is a positive-sense monopartite single-stranded RNA virus that belongs to the Carmovirus genus of the Tombusviridae family, which includes carnation mottle virus (CarMV). The HCRSV virion has a 30 nm diameter icosahedral capsid with T = 3 quasi-symmetry containing 180 copies of a 38 kDa coat protein (CP) and encapsidates a full-length 3.9 kb genomic RNA. Authentic virus was harvested from infected host kenaf leaves and was purified by saturated ammonium sulfate precipitation, sucrose density-gradient centrifugation and anion-exchange chromatography. Virus crystals were grown in multiple conditions; one of the crystals diffracted to 3Synchrotron .2 A resolution and allowed the collection of a partial data set. The crystal belonged to space group R32, with unit-cell parameters a = b = 336.4, c = 798.5 . Packing considerations and rotation-function analysis determined that there were three particles per unit cell, all of which have the same orientation and fixed positions, and resulted in tenfold noncrystallography symmetry for real-space averaging. The crystals used for the structure determination of southern bean mosaic virus (SBMV) have nearly identical characteristics. Together, these findings will greatly aid the high-resolution structure determination of HCRSV.

  8. Anticorpos neutralizantes contra os vírus da cinomose e da parainfluenza em cães de canis dos municípios de Novo Hamburgo e Porto Alegre, RS, Brasil Neutralizing antibodies to distemper and parainfluenza viruses in dogs in shelter kennels in the municipalities of Novo Hamburgo and Porto Alegre, RS, Brazil

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    Tamahine Larronda Schmidt Hartmann

    2007-08-01

    Full Text Available No presente estudo, foi realizada uma pesquisa em busca de anticorpos neutralizantes contra os vírus da cinomose (CDV e da parainfluenza (CPIV caninos em amostras de soro de 173 cães recolhidos a canis municipais em Novo Hamburgo (n=82 e Porto Alegre (n=91, RS. A pesquisa de anticorpos neutralizantes foi realizada pela técnica de soroneutralização frente a duas amostras vacinais de CDV (Rockborn e Snyder Hill e frente a uma amostra de CPIV (V660. Em relação ao CDV, 95,9% das amostras de soros foram negativas para anticorpos neutralizantes contra a amostra Snyder Hill e 90,7% soronegativas para a amostra Rockborn. Entre os soropositivos (n=20; 11,6%, somente três deles apresentaram anticorpos neutralizantes frente às duas amostras de CDV testadas, indicando pouca reatividade cruzada entre as mesmas. Quanto ao CPIV, a prevalência de anticorpos neutralizantes encontrada frente à amostra V660 foi de 51,4%. Esses achados indicam que a maioria dos cães examinados não teve contato prévio com o CDV, seja por infecção natural ou por imunização prévia. O CPIV, porém, parece estar amplamente difundido na população canina examinada, provavelmente por exposição natural ao vírus.In this report a serological survey was carried out in search for antibodies to canine distemper virus (CDV and canine parainfluenza virus (CPIV in 173 sera from dogs withdraw in kennels of the municipalities of Novo Hamburgo (n=82 and Porto Alegre (n=91, RS, Brazil. Neutralizing antibodies were evaluated against two CDV strains used for vaccine production (Rockborn and Snyder Hill as well as one strain of CPIV (V660. Search for anti-CDV neutralizing antibodies revealed that 95.9% of sera were negative for antibodies to CDV Snyder Hill and 90.7% were negative for antibodies to CDV Rockborn. Among the positive sera (n=20; 11.6 % only three of those had neutralizing antibodies to both CDV strains, indicating a low degree of cross reactivity between those. As

  9. On the origin of the polyhedral protein of the nuclear polyhedrosis virus of Autographa californica

    NARCIS (Netherlands)

    Beek, van der C.P.

    1980-01-01

    The purpose of this study was to investigate the origin of the polyhedral protein of the nuclear polyhedrosis virus of the alfalfa looper, <em>Autographa californicaem> (AcNPV), one of the best characterized viruses of the family Baculoviridae. The present knowledge of the

  10. Virion composition and genomics of white spot syndrome virus of shrimp

    NARCIS (Netherlands)

    Hulten, van M.C.W.

    2001-01-01


    Since its first discovery in Taiwan in 1992, <em>White spot syndrome virus> (WSSV) has caused major economic damage to shrimp culture. The virus has spread rapidly through Asia and reached the Western Hemisphere in 1995 (Texas), where it continued its devastating effect fu

  11. Virion composition and genomics of white spot syndrome virus of shrimp

    NARCIS (Netherlands)

    Hulten, van M.C.W.

    2001-01-01


    Since its first discovery in Taiwan in 1992, <em>White spot syndrome virus> (WSSV) has caused major economic damage to shrimp culture. The virus has spread rapidly through Asia and reached the Western Hemisphere in 1995 (Texas), where it continued its devastating effect

  12. Efeito da infecção precoce por Begomovirus com genoma bipartido em características de frutos de tomate industrial Effect of early infection by a bipartite Begomovirus species on processing tomato fruit characteristics

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    Leonardo de B. Giordano

    2005-07-01

    Full Text Available Dados a respeito dos efeitos da infecção por espécies sul-americanas de Begomovirus com genoma bipartido na fisiologia da produção do tomateiro são ainda escassos na literatura. O presente trabalho foi realizado visando estimar o impacto da infecção precoce em parâmetros de produtividade e teor de sólidos solúveis (ºBrix utilizando uma cultivar de tomateiro para processamento industrial suscetível a Begomovirus. A inoculação controlada das mudas (18 dias após semeadura foi realizada inicialmente em casa de vegetação usando moscas-brancas (Bemisia tabaci biótipo B virulíferas, sendo as mudas expostas aos insetos por quatro dias. Um grupo de mudas não inoculadas (controles foi mantido isolado em uma casa de vegetação livre do inseto vetor. Plantas inoculadas e não inoculadas foram simultaneamente transplantadas em campo e dispostas em um delineamento de blocos ao acaso com quatro repetições com dez plantas por parcela. A análise de seqüência de nucleotídeos de parte do genoma do DNA-A do vírus utilizado na inoculação indicou ser um isolado distinto, mas geneticamente relacionado com Tomato chlorotic mottle virus (uma das espécies do complexo de Begomovirus infectando tomateiro no Brasil. Foi observada diferença significativa para produção total, sendo 109,0 t/ha nas plantas controle e 48,2 t/ha nas mudas submetidas à inoculação precoce; tendo-se redução de aproximadamente 60% na produtividade. A diferença mais acentuada foi observada para o parâmetro número de frutos por planta. As plantas não infectadas apresentaram uma média de 66 frutos, enquanto que nas plantas infectadas esta média foi de 38 frutos. O peso médio e o teor de sólidos solúveis dos frutos não foram significativamente influenciados pela infeção precoce. Desta forma, existe a possibilidade de reduzir perdas de produtividade devido à infeção de Begomovirus por meio do manejo adequado do sistema de produção, incluindo

  13. Incidence of respiratory viruses in preterm infants submitted to mechanical ventilation Incidência de vírus respiratórios em crianças pré-termo externas submetidas à ventilação mecânica

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    Edna Maria de Albuquerque Diniz

    2005-02-01

    Full Text Available The objectives of this study were to determine the incidence of infection by respiratory viruses in preterm infants submitted to mechanical ventilation, and to evaluate the clinical, laboratory and radiological patterns of viral infections among hospitalized infants in the neonatal intensive care unit (NICU with any kind of acute respiratory failure. Seventy-eight preterm infants were studied from November 2000 to September 2002. The newborns were classified into two groups: with viral infection (Group I and without viral infection (Group II. Respiratory viruses were diagnosed in 23 preterm infants (29.5%; the most frequent was respiratory syncytial virus (RSV (14.1%, followed by influenza A virus (10.2%. Rhinorrhea, wheezing, vomiting and diarrhea, pneumonia, atelectasis, and interstitial infiltrate were significantly more frequent in newborns with nosocomial viral infection. There was a correlation between nosocomial viral infection and low values of C-reactive protein. Two patients with mixed infection from Group I died during the hospital stay. In conclusion, RSV was the most frequent virus in these patients. It was observed that, although the majority of viral lower respiratory tract infections had a favorable course, some patients presented a serious and prolonged clinical manifestation, especially when there was concomitant bacterial or fungal infection.Os objetivos do estudo foram determinar a incidência de infecção por vírus respiratórios em crianças pré-termo externas submetidas à ventilação mecânica e avaliar os padrões clínico, laboratorial e radiológico das infecções virais entre crianças pré-termo internadas em unidade de cuidados intensivos neonatal (NICU com insuficiência respiratória aguda de qualquer tipo. Setenta e oito crianças pré-termo externas foram estudadas de Novembro de 2000 a Setembro de 2002. Os recém-nascidos foram classificados em dois grupos: com infecção viral (Grupo I e sem infec

  14. Effect of 5' and 3' terminal sequences, overall length, and coding capacity on the accumulation of defective RNAs associated with broad bean mottle bromovirus in planta.

    Science.gov (United States)

    Pogany, J; Romero, J; Bujarski, J J

    1997-02-17

    Broad bean mottle bromovirus (BBMV) was shown to accumulate RNA2-derived defective interfering (DI) RNAs [Romero et al., Virology 194, 576-584 (1993); Pogany et al., Virology 212, 574-586 (1995)]. In this work, we utilize three sets of BBMV RNA2-derived artificial DI RNA constructs to determine factors that affect the accumulation of defective RNAs in planta. One set of deletion constructs was used to localize sequences required for efficient accumulation within the 5' 883 nt and the 3' 387 nt of the DI RNAs. The second set had a gradually increasing size of 3' nested deletions to determine the minimal length required for efficient DI RNA accumulation. The smallest DI RNA still accumulating in plants was found to be 1712 nt long. The third set consisted of frameshift mutants which showed that at least 64.4% of BBMV DI RNA sequences must have the 5' portion of the 2a open reading frame to ensure efficient accumulation. The importance of these factors in the selection of DI RNAs is discussed.

  15. Evaluation of the use of real-time PCR for human T cell lymphotropic virus 1 and 2 as a confirmatory test in screening for blood donors Análise do uso da PCR em tempo real para HTLV-1 e 2 como teste confirmatório na triagem de doadores de sangue

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    Rafaela Gomes Andrade

    2010-04-01

    Full Text Available INTRODUCTION: HTLV-1/2 screening among blood donors commonly utilizes an enzyme-linked immunosorbent assay (EIA, followed by a confirmatory method such as Western blot (WB if the EIA is positive. However, this algorithm yields a high rate of inconclusive results, and is expensive. METHODS: Two qualitative real-time PCR assays were developed to detect HTLV-1 and 2, and a total of 318 samples were tested (152 blood donors, 108 asymptomatic carriers, 26 HAM/TSP patients and 30 seronegative individuals. RESULTS: The sensitivity and specificity of PCR in comparison with WB results were 99.4% and 98.5%, respectively. PCR tests were more efficient for identifying the virus type, detecting HTLV-2 infection and defining inconclusive cases. CONCLUSIONS: Because real-time PCR is sensitive and practical and costs much less than WB, this technique can be used as a confirmatory test for HTLV in blood banks, as a replacement for WB.INTRODUÇÃO: A triagem para HTLV-1/2 em doadores de sangue geralmente utiliza imunoensaio enzimático, seguido de um método confirmatório como Western blot quando o EIA é positivo, mas este algoritmo mostra alta taxa de resultados inconclusivos, e elevado custo. MÉTODOS: Dois ensaios qualitativos de PCR em tempo real foram desenvolvidos para detectar HTLV-1 e 2 e um total de 318 amostras foram testadas por PCR (152 de doadores de sangue, 108 de portadores assintomáticos, 26 de pacientes HAM/TSP e 30 de indivíduos soronegativos. RESULTADOS: A sensibilidade e especificidade das PCR em relação aos resultados de WB foram de 99,4% e 98,5%, respectivamente. As PCR foram mais eficientes em identificar o tipo viral, a infecção pelo HTLV-2 e úteis para definir casos inconclusivos. CONCLUSÕES: Por serem sensíveis, práticas e de custo muito inferior ao do WB, as técnicas de PCR em tempo real podem ser usadas como teste confirmatório do HTLV em bancos de sangue, em substituição ao WB.

  16. Reaction of sweet pepper to the potato virus y (PVYm

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    Echer Márcia de Moraes

    2002-01-01

    Full Text Available Traditional sweet pepper cultivars showing susceptibility to the Potato virus Y (PVY are being replaced by resistant hybrids with higher commercial value. Despite of much information about resistance source reaction and their inheritance, there is no knowledge about the genetic background of commercial resistant hybrids. Reaction of sweet pepper (Capsicum annuum L. hybrids to the Potato virus Y (PVYm such as Acuario, Magali R, Nathalie and their respective generations F2 and F3 as well as hybrids Amanda, Corteso W208, CPC-6272, Dagmar, Elisa, Magali, Margarita, Monteiro, Quantum, Vivo W205 was evaluated. Reaction to PVYm was evaluated as resistant or susceptible. Magali R and Nathalie hybrid did not show any mosaic symptoms. Magali R and Nathalie hybrids resistance is due to a single dominant gene indicating resistant versus susceptible parental lines crossing pedigree. Amanda, Acuario, Corteso W208, Dagmar, Elisa, Margarita, Monteiro, Quantum and Vivo W205, considered resistant to PVY, were highly susceptibility to PVY strain m. Hybrids, claimed as resistant to the Pepper mottle virus (PepMoV, were also resistant to PVYm.

  17. Reference Gene Selection in the Desert Plant <em>Eremosparton songoricuem>m>

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    Dao-Yuan Zhang

    2012-06-01

    Full Text Available <em>Eremosparton songoricum em>(Litv. Vass. (<em>E. songoricumem> is a rare and extremely drought-tolerant desert plant that holds promise as a model organism for the identification of genes associated with water deficit stress. Here, we cloned and evaluated the expression of eight candidate reference genes using quantitative real-time reverse transcriptase polymerase chain reactions. The expression of these candidate reference genes was analyzed in a diverse set of 20 samples including various <em>E. songoricumem> plant tissues exposed to multiple environmental stresses. GeNorm analysis indicated that expression stability varied between the reference genes in the different experimental conditions, but the two most stable reference genes were sufficient for normalization in most conditions.<em> EsEFem> and <em>Esα-TUB> were sufficient for various stress conditions, <em>EsEF> and <em>EsACT> were suitable for samples of differing germination stages, and <em>EsGAPDH>and <em>Es>UBQ em>were most stable across multiple adult tissue samples. The <em>Es18Sem> gene was unsuitable as a reference gene in our analysis. In addition, the expression level of the drought-stress related transcription factor <em>EsDREB2em>> em>verified the utility of<em> E. songoricumem> reference genes and indicated that no single gene was adequate for normalization on its own. This is the first systematic report on the selection of reference genes in <em>E. songoricumem>, and these data will facilitate future work on gene expression in this species.

  18. Caracterização citológica dos hemócitos de Anticarsia gemmatalis (Lepidoptera, Noctuidae em larvas resistentes ao vírus AgMNPV Citological characterization of the Anticarsia gemmatalis (Lepidoptera, Noctuidae hemocytes in resistant larvae to the virus AgMNPV

    Directory of Open Access Journals (Sweden)

    Maria C. C. de Negreiro

    2009-03-01

    Full Text Available A ocorrência de larvas de Anticarsia gemmatalis (Hübner, 1932 resistentes ao vírus AgMNPV em laboratório levou ao estudo dos hemócitos deste inseto para avaliar sua participação nos mecanismos que possibilitam a resistência ao vírus. As larvas resistentes com 6 - 11 dias de desenvolvimento (3º a 5º instar foram anestesiadas por resfriamento e rapidamente limpas em álcool 70%. A hemolinfa foi coletada através de punção abdominal, a análise morfológica foi realizada em contraste de fase e esfregaços corados com solução de Seller. A contagem total de hemócitos (CTH foi realizada em câmara de Neubauer com hemolinfa não diluída. Para a contagem diferencial de hemócitos (CDH, utilizou-se hemolinfa diluída em solução anticoagulante para insetos. Foram identificados seis tipos de hemócitos: plasmatócitos (38,5%, granulócitos (22,6%, oenocitóides (20,4%, esferulócitos (14,5%, prohemócitos (2,3% e vermiformes (1,5%. O número total de hemócitos mostrou um aumento significativo durante o período larval estudado.The occurrence of Anticarsia gemmatalis (Hübner, 1932 larvae resistant to the virus AgMNPV in laboratory led to the study of the hemocytes of this insect, in order to evalue its participation in the mechanisms which enables the resistance to the virus. The resistant larvae with 6 to 11 developmental days old (3rd to 5th instars were anesthetized by cold and after that were quickly cleaned in 70% alcohol. The hemolymph was collected through abdominal puncturing; the morphological analysis was made in phase contrast and colored smears with Seller solution. The total hemocytes counting (THC, was made in modified Neubauer chamber with not diluted hemolymph. For the differential hemocytes counting (DHC, was used diluted hemolymph in anticoagulant solution for insects. Six hemocytes types were identified: plasmatocytes (38.5%, granulocytes (22.6%, oenocytoids (20.4%, spherulocytes (14.5%, prohemocytes (2.3% and

  19. Anticorpos contra o vírus da língua azul em bovinos do sertão da Paraíba Antibodies to bluetongue virus in bovines of Paraíba State, Brazil

    OpenAIRE

    C.B. Melo; Oliveira, A. M. de; Azevedo,E.O.; Z.I.P. Lobato; R.C. Leite

    2000-01-01

    In June of 1997 the prevalence of antibodies to bluetongue virus was between 3.94 and 4.82% in 137 bovine serum samples from 12 herds in Paraiba State, Brazil. This is the first report of antibodies to bluetongue virus in Paraiba State herds.

  20. 中国甜樱桃病毒病及其检测技术研究进展%Advances in Sweet Cherry Viruses and Detection Technology in China

    Institute of Scientific and Technical Information of China (English)

    王文文; 宗晓娟; 陈立伟; 王甲威; 魏海蓉; 徐丽; 严雪瑞; 刘庆忠

    2012-01-01

    综述了近年来中国对甜樱桃(Prunus avium L.)病毒病及其检测技术的相关报道,介绍了中国甜樱桃上常见病毒的种类、危害及特性,主要包括:李属坏死环斑病毒(PNRSV)、李矮缩病毒(PDV)、苹果褪绿叶斑病毒(ACLSV)、樱桃锉叶病毒(CRLV)、樱桃病毒A(CVA)、樱桃绿环斑驳病毒(CGRMV)、樱桃小果病毒(LChV);阐述了甜樱桃病毒检测中所用的方法、技术,包括指示植物法(生物学鉴定法)、电子显微镜技术、血清学方法、分子生物学技术方法等.%The recent virus disease research on sweet cherry in China was reviewed, the species of the main sweet cherry viruses identified and the characteristics of these viruses were introduced. These viruses included Prunus necrotic ringspot virus, Prunus dwarf virus, Apple chlorotic leaf spot virus, Cherry rasp leaf virus, Cherry virus A, Cherry green ring mottle virus,Little cherry virus. The detection technologies were also described, including indicator plant,electron microscopy,sero-logical method and molecular biological techniques.

  1. Zika Virus

    Science.gov (United States)

    Zika is a virus that is spread mostly by mosquitoes. A pregnant mother can pass it to ... through blood transfusions. There have been outbreaks of Zika virus in the United States, Africa, Southeast Asia, ...

  2. Chikungunya Virus

    Science.gov (United States)

    ... Gaines, PhD, MPH, MA, CHES Differentiating Chikungunya From Dengue: A Clinical Challenge For Travelers CDC Travelers' Health Chikungunya Virus Home Prevention Transmission Symptoms & Treatment Geographic Distribution Chikungunya virus in ...

  3. Chikungunya virus

    Science.gov (United States)

    Chikungunya virus infection; Chikungunya ... Where Chikungunya is found Before 2013, the virus was found in Africa, Asia, Europe, and the Indian and Pacific oceans. In late 2013, outbreaks occurred for the first time in the ...

  4. Coat protein sequence shows that Cucumber mosaic virus isolate from geraniums (Pelargonium spp.) belongs to subgroup II

    Indian Academy of Sciences (India)

    Neeraj Verma; B K Mahinghara; Raja Ram; A A Zaidi

    2006-03-01

    A viral disease was identified on geraniums (Pelargonium spp.) grown in a greenhouse at the Institute of Himalayan Bioresource Technology (IHBT), Palampur, exhibiting mild mottling and stunting. The causal virus (Cucumber mosaic virus, CMV) was identified and characterized on the basis of host range, aphid transmission, enzyme linked immunosorbent assay (ELISA), DNA-RNA hybridization and reverse transcription polymerase chain reaction (RTPCR). A complete coat protein (CP) gene was amplified using degenerate primers and sequenced. The CP gene showed nucleotide and amino acid homology up to 97%–98% and 96%–99%, respectively with the sequences of CMV subgroup II. The CP gene also showed homologies of 75%–97% in nucleotide and 77%–96% in amino acid with the CMV Indian isolates infecting various crops. On the basis of sequence homology, it was concluded that CMV-infecting geraniums in India belong to subgroup II.

  5. Human T-cell lymphotropic virus type II in Guaraní Indians, Southern Brazil Vírus linfotrópico de células T-humanas do tipo II em Índios Guaraní, Sul do Brasil

    Directory of Open Access Journals (Sweden)

    Marcio Menna-Barreto

    2005-12-01

    Full Text Available Human T-cell lymphotropic virus type II (HTLV-II is found in many New World Indian groups on the American continent. In Brazil, HTLV-II has been found among urban residents and Indians in the Amazon region, in the North. Guaraní Indians in the South of Brazil were studied for HTLV-I/II infection. Among 52 individuals, three (5.76% showed positive anti-HTLV-II antibodies (enzyme-linked immunosorbent assay and Western blot. This preliminary report is the first seroepidemiological study showing HTLV-II infection among Indians in the South of Brazil.O vírus linfotrópico de células T-humanas do tipo II (HTLV-II é identificado em muitos grupos de ameríndios. No Brasil, tem sido encontrado em indivíduos da população urbana, bem como em índios oriundos da região Amazônica. Os Índios Guaraní, do Sul do país, foram investigados para infecção por HTLV-I/II. Três indivíduos, oriundos de uma amostra de 52 índios, demonstraram sororeatividade para HTLV-II (ensaio imunoenzimático e Western blot. Este estudo preliminar foi o primeiro a identificar a presença de infecção por HTLV-II em ameríndios do Sul do Brasil.

  6. Perfil da infecção pelo vírus da diarreia viral bovina (BVDV em um rebanho bovino leiteiro de alta produção e com programa de vacinação contra o BVDV Bovine viral diarrhea virus (BVDV infection profile in a high production dairy herd with vaccination program against BVDV

    Directory of Open Access Journals (Sweden)

    Stelamaris Dezen

    2013-02-01

    Full Text Available A infecção pelo vírus da diarreia viral bovina (BVDV foi avaliada em um rebanho bovino leiteiro de alta produção com histórico de problemas reprodutivos e de vacinação regular contra o BVDV. A identificação do vírus foi realizada por RT-PCR em soro sanguíneo e o perfil sorológico por vírus-neutralização. Inicialmente, 100% (n=692 dos animais do rebanho foram avaliados com relação à presença de infecção ativa pelo BVDV por meio da RT-PCR. Quatro meses após, todos os animais positivos (n=29 na primeira avaliação foram avaliados novamente pela RT-PCR, assim como todos os animais que nasceram (n=72 e os que apresentaram problemas reprodutivos (n=36 no intervalo entre a primeira e a segunda colheita de sangue. Os resultados finais do estudo possibilitaram identificar 27 animais transitoriamente infectados e três animais persistentemente infectados (PI. A sorologia, realizada apenas nos animais positivos na primeira avaliação pela RT-PCR e nas vacas que apresentaram problemas reprodutivos entre a primeira e a segunda RT-PCR, demonstrou grande flutuação nos títulos de anticorpos neutralizantes, além de soroconversão na maioria dos animais. Foram identificados aumentos nos títulos de anticorpos neutralizantes que variaram entre 3 e 8 log2, indicando infecção ativa no rebanho. A circulação viral no rebanho avaliado foi responsável pela expressão de sinais clínicos da esfera reprodutiva em animais com baixo título de anticorpos e consequente falha na proteção fetal. Os resultados demonstram que o controle da infecção pelo BVDV apenas por meio da vacinação regular em rebanhos com animais PI pode não ser eficaz na profilaxia dessa virose.The profile of bovine viral diarrhea virus (BVDV infection was studies in a high production dairy herd selected based on a history of reproductive failures and regular vaccination against BVDV. Virus identification was performed by RT-PCR and serological profile was

  7. Synthesis, Crystal Structure and Luminescent Property of Cd (II Complex with <em>N-Benzenesulphonyl-L>-leucine

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    Xishi Tai

    2012-09-01

    Full Text Available A new trinuclear Cd (II complex [Cd3(L6(2,2-bipyridine3] [L =<em> Nem>-phenylsulfonyl-L>-leucinato] has been synthesized and characterized by elemental analysis, IR and X-ray single crystal diffraction analysis. The results show that the complex belongs to the orthorhombic, space group<em> Pem>212121 with<em> aem> = 16.877(3 Å, <em>b> em>= 22.875(5 Å, <em>c em>= 29.495(6 Å, <em>α> em>= <emem>= <emem>= 90°, <em>V> em>= 11387(4 Å3, <em>Z> em>= 4, <em>Dc>= 1.416 μg·m−3, <emem>= 0.737 mm−1, <em>F> em>(000 = 4992, and final <em>R>1 = 0.0390, <em>ωR>2 = 0.0989. The complex comprises two seven-coordinated Cd (II atoms, with a N2O5 distorted pengonal bipyramidal coordination environment and a six-coordinated Cd (II atom, with a N2O4 distorted octahedral coordination environment. The molecules form one dimensional chain structure by the interaction of bridged carboxylato groups, hydrogen bonds and p-p interaction of 2,2-bipyridine. The luminescent properties of the Cd (II complex and <em>N-Benzenesulphonyl-L>-leucine in solid and in CH3OH solution also have been investigated.

  8. A real-time quantitative assay for hepatitis B DNA virus (HBV developed to detect all HBV genotypes Ensaio quantitativo em tempo real para o DNA do vírus da hepatite B (HBV desenvolvido para detectar todos os genótipos do HBV

    Directory of Open Access Journals (Sweden)

    Roberta Sitnik

    2010-06-01

    Full Text Available Hepatitis B virus (HBV is a major cause of chronic liver disease worldwide. Besides genotype, quantitative analysis of HBV infection is extensively used for monitoring disease progression and treatment. Affordable viral load monitoring is desirable in resource-limited settings and it has been already shown to be useful in developing countries for other viruses such as Hepatitis C virus (HCV and HIV. In this paper, we describe the validation of a real-time PCR assay for HBV DNA quantification with TaqMan chemistry and MGB probes. Primers and probes were designed using an alignment of sequences from all HBV genotypes in order to equally amplify all of them. The assay is internally controlled and was standardized with an international HBV panel. Its efficacy was evaluated comparing the results with two other methods: Versant HBV DNA Assay 3.0 (bDNA, Siemens, NY, USA and another real-time PCR from a reference laboratory. Intra-assay and inter-assay reproducibilities were determined and the mean of CV values obtained were 0.12 and 0.09, respectively. The assay was validated with a broad dynamic range and is efficient for amplifying all HBV genotypes, providing a good option to quantify HBV DNA as a routine procedure, with a cheap and reliable protocol.O vírus da Hepatite B (HBV é uma das principais causas de doença crônica do fígado no mundo. Além do genótipo, a análise quantitativa do HBV é amplamente utilizada para monitorar a progressão da doença e o tratamento. Em locais com recursos escassos, métodos baratos para o monitoramento da carga viral são desejáveis e, em países em desenvolvimento, sua utilidade já foi demonstrada para outros vírus, como o da Hepatite C e HIV. Neste trabalho, descrevemos a validação de um teste de PCR em Tempo Real para a quantificação do DNA do HBV utilizando sondas Taqman/MGB. Os oligos e sondas foram escolhidos usando um alinhamento contendo seqüências de todos os genótipos do HBV para

  9. Hepatitis B vaccine efficacy in patients with chronic liver disease by hepatitis C virus Eficácia da vacina anti-hepatite B em pacientes com doença hepática crônica pelo vírus da hepatite C

    Directory of Open Access Journals (Sweden)

    Angelo Alves de Mattos

    2004-09-01

    Full Text Available BACKGROUND: Considering the immunosuppression of patients with chronic liver disease, their response to vaccination is discussed in literature. AIMS: To evaluate the response of hepatitis B vaccine in patients with chronic hepatitis C virus infection. METHODS: This is a prospective study in which 85 patients with chronic hepatitis C virus infection (46.8 ± 9.4 years, 44.7% males and 46 healthy adults (36.7 ± 11.1 years; 39.1% males were evaluated. Confirmation of hepatitis C virus was obtained by the technique of polymerase chain reaction. Viral load was determined by the branched DNA method in 74 patients, and genotype was determined by sequencing in 73 patients. All patients and healthy adults received three doses of Engerix B® vaccine IM (at 0, 30 and 180 days. Serological responses to the vaccine were divided into three categories: seroprotection, when anti-HBs was >100 mUI/mL; seroconversion, when anti-HBs was 10-99 mUI/mL, and non-reagent, when anti-HBs was RACIONAL: Considerando a imunossupressão dos pacientes com doença hepática crônica, sua resposta à vacinação é discutida na literatura. OBJETIVOS: Avaliar a resposta à vacina anti-hepatite B em pacientes com hepatite crônica pelo vírus C. MÉTODOS: Estudo prospectivo avaliando 85 pacientes com infecção pelo vírus C (46,8 ± 9,4 anos, 44,7% homens e 46 adultos saudáveis (36,7 ± 11,1 anos, 39,1% homens. Carga viral foi determinada através do b-DNA em 74 pacientes e o genótipo foi determinado por seqüenciamento em 73 pacientes. Todos os pacientes e os adultos saudáveis receberam três doses da vacina Engerix B® IM (aos 0, 30 e 180 dias. Resposta sorológica à vacina foi dividida em três categorias: soroproteção, quando anti-HBs era >"100 mUI/mL; soroconversão, quando anti-HBs era 10-99 mUI/mL e não-reagente, quando anti-HBs era <10 mUI/mL. RESULTADOS: A resposta da vacina anti-hepatite B em 1 mês após a dose 3 foi soroproteção em 37,7%, soroconversão em

  10. Assessment of the efficacy of membrane filtration processes to remove human enteric viruses and the suitability of bacteriophages and a plant virus as surrogates for those viruses.

    Science.gov (United States)

    Shirasaki, N; Matsushita, T; Matsui, Y; Murai, K

    2017-02-24

    Here, we evaluated the efficacy of direct microfiltration (MF) and ultrafiltration (UF) to remove three representative human enteric viruses (i.e., adenovirus [AdV] type 40, coxsackievirus [CV] B5, and hepatitis A virus [HAV] IB), and one surrogate of human caliciviruses (i.e., murine norovirus [MNV] type 1). Eight different MF membranes and three different UF membranes were used. We also examined the ability of coagulation pretreatment with high-basicity polyaluminum chloride (PACl) to enhance virus removal by MF. The removal ratios of two bacteriophages (MS2 and φX174) and a plant virus (pepper mild mottle virus; PMMoV) were compared with the removal ratios of the human enteric viruses to assess the suitability of these viruses to be used as surrogates for human enteric viruses. The virus removal ratios obtained with direct MF with membranes with nominal pore sizes of 0.1-0.22 μm differed, depending on the membrane used; adsorptive interactions, particularly hydrophobic interactions between virus particles and the membrane surface, were dominant factors for virus removal. In contrast, direct UF with membranes with nominal molecular weight cutoffs of 1-100 kDa effectively removed viruses through size exclusion, and >4-log10 removal was achieved when a membrane with a nominal molecular weight cutoff of 1 kDa was used. At pH 7 and 8, in-line coagulation-MF with nonsulfated high-basicity PACls containing Al30 species had generally a better virus removal (i.e., >4-log10 virus removal) than the other aluminum-based coagulants, except for φX174. For all of the filtration processes, the removal ratios of AdV, CV, HAV, and MNV were comparable and strongly correlated with each other. The removal ratios of MS2 and PMMoV were comparable or smaller than those of the three human enteric viruses and MNV, and were strongly correlated with those of the three human enteric viruses and MNV. The removal ratios obtained with coagulation-MF for φX174 were markedly smaller than

  11. Characterization of Brugmansia mosaic virus Isolated from Brugmansia spp. in Korea

    Directory of Open Access Journals (Sweden)

    Chung Youl Park

    2014-12-01

    Full Text Available In May 2013, an angel’s trumpet leaves showing mosaic and malformation symptoms were collected from Suwon city, Gyeonggi-do. An analysis of the collected sample by transmission electron microscopy observation showed filamentous rod particles of 720-800 nm in length. On the basis of the these observations, we performed PCR against three reported Potyviruses (Brugmansia mosaic virus, Colombian datura virus and Brugmansia suaveolens mottle virus, and the sample was positive for BruMV. Pathogenicity and host range test of BruMV was determined by mechanical inoculation. Solanaceae (tobacco, tomato and eggplant and Amaranthaceae (ground cherry appeared typical virus symptoms. To determine coat protein of this virus, we designed specific primer pairs, and performed PCR amplification, cloning, and sequencing. Phylogenetic analysis showed that BruMV-SW was most closely related to BruMV isolate SK. Comparison of the BruMV-SW coat protein nucleotide sequences showed 92% to 99% identities to the other BruMV isolates.

  12. Begomoviruses infecting weeds in Cuba: increased host range and a novel virus infecting Sida rhombifolia.

    Science.gov (United States)

    Fiallo-Olivé, Elvira; Navas-Castillo, Jesús; Moriones, Enrique; Martínez-Zubiaur, Yamila

    2012-01-01

    As a result of surveys conducted during the last few years to search for wild reservoirs of begomoviruses in Cuba, we detected a novel bipartite begomovirus, sida yellow mottle virus (SiYMoV), infecting Sida rhombifolia plants. The complete genome sequence was obtained, showing that DNA-A was 2622 nucleotides (nt) in length and that it was most closely related (87.6% nucleotide identity) to DNA-A of an isolate of sida golden mosaic virus (SiGMV) that infects snap beans (Phaseolus vulgaris) in Florida. The DNA-B sequence was 2600 nt in length and shared the highest nucleotide identity (75.1%) with corchorus yellow spot virus (CoYSV). Phylogenetic relationship analysis showed that both DNA components of SiYMoV were grouped in the Abutilon clade, along with begomoviruses from Florida and the Caribbean islands. We also present here the complete nucleotide sequence of a novel strain of sida yellow vein virus found infecting Malvastrum coromandelianum and an isolate of euphorbia mosaic virus that was found for the first time infecting Euphorbia heterophylla in Cuba.

  13. Metagenomic-Based Screening and Molecular Characterization of Cowpea-Infecting Viruses in Burkina Faso

    Science.gov (United States)

    Palanga, Essowè; Filloux, Denis; Martin, Darren P.; Fernandez, Emmanuel; Gargani, Daniel; Ferdinand, Romain; Zabré, Jean; Bouda, Zakaria; Neya, James Bouma; Sawadogo, Mahamadou; Traore, Oumar; Peterschmitt, Michel; Roumagnac, Philippe

    2016-01-01

    Cowpea, (Vigna unguiculata L. (Walp)) is an annual tropical grain legume. Often referred to as “poor man’s meat”, cowpea is one of the most important subsistence legumes cultivated in West Africa due to the high protein content of its seeds. However, African cowpea production can be seriously constrained by viral diseases that reduce yields. While twelve cowpea-infecting viruses have been reported from Africa, only three of these have so-far been reported from Burkina Faso. Here we use a virion-associated nucleic acids (VANA)-based metagenomics method to screen for the presence of cowpea viruses from plants collected from the three agro-climatic zones of Burkina Faso. Besides the three cowpea-infecting virus species which have previously been reported from Burkina Faso (Cowpea aphid borne mosaic virus [Family Potyviridae], the Blackeye cowpea mosaic virus—a strain of Bean common mosaic virus—[Family Potyviridae] and Cowpea mottle virus [Family Tombusviridae]) five additional viruses were identified: Southern cowpea mosaic virus (Sobemovirus genus), two previously uncharacterised polerovirus-like species (Family Luteoviridae), a previously uncharacterised tombusvirus-like species (Family Tombusviridae) and a previously uncharacterised mycotymovirus-like species (Family Tymoviridae). Overall, potyviruses were the most prevalent cowpea viruses (detected in 65.5% of samples) and the Southern Sudan zone of Burkina Faso was found to harbour the greatest degrees of viral diversity and viral prevalence. Partial genome sequences of the two novel polerovirus-like and tombusvirus-like species were determined and RT-PCR primers were designed for use in Burkina Faso to routinely detect all of these cowpea-associated viruses. PMID:27764211

  14. Robust RNAi-based resistance to mixed infection of three viruses in soybean plants expressing separate short hairpins from a single transgene.

    Science.gov (United States)

    Zhang, Xiuchun; Sato, Shirley; Ye, Xiaohong; Dorrance, Anne E; Morris, T Jack; Clemente, Thomas E; Qu, Feng

    2011-11-01

    Transgenic plants expressing double-stranded RNA (dsRNA) of virus origin have been previously shown to confer resistance to virus infections through the highly conserved RNA-targeting process termed RNA silencing or RNA interference (RNAi). In this study we applied this strategy to soybean plants and achieved robust resistance to multiple viruses with a single dsRNA-expressing transgene. Unlike previous reports that relied on the expression of one long inverted repeat (IR) combining sequences of several viruses, our improved strategy utilized a transgene designed to express several shorter IRs. Each of these short IRs contains highly conserved sequences of one virus, forming dsRNA of less than 150 bp. These short dsRNA stems were interspersed with single-stranded sequences to prevent homologous recombination during the transgene assembly process. Three such short IRs with sequences of unrelated soybean-infecting viruses (Alfalfa mosaic virus, Bean pod mottle virus, and Soybean mosaic virus) were assembled into a single transgene under control of the 35S promoter and terminator of Cauliflower mosaic virus. Three independent transgenic lines were obtained and all of them exhibited strong systemic resistance to the simultaneous infection of the three viruses. These results demonstrate the effectiveness of this very straight forward strategy for engineering RNAi-based virus resistance in a major crop plant. More importantly, our strategy of construct assembly makes it easy to incorporate additional short IRs in the transgene, thus expanding the spectrum of virus resistance. Finally, this strategy could be easily adapted to control virus problems of other crop plants.

  15. High prevalence of hepatitis C infection among Brazilian hemodialysis patients in Rio de Janeiro: a one-year follow-up study Alta prevalência de infecção pelo virus da hepatite C em pacientes de hemodiálise do Rio de Janeiro: estudo de acompanhamento durante 1 ano

    Directory of Open Access Journals (Sweden)

    B. O. M. Vanderborght

    1995-02-01

    Full Text Available Nearly 400 hemodialysis patients treated at 5 different hemodialysis units in Rio de Janeiro were tested for one year for the presence of hepatitis C and B markers. During the same period, samples were also obtained from 35 continuous ambulatory peritoneal dialysis (CAPD patients and from 242 health care workers. Depending on the hemodialysis unit studied, anti-HCV prevalence rates ranging from 47% to 82% (mean 65% were detected. CAPD patients showed a lower prevalence of 17%. The prevalence of antibodies against hepatitis C virus (anti-HCV among health care workers was 2.9%. We observed a hepatitis C attack rate of 11.5% per year in the anti-HCV-negative hemodialysis patient population. An average of 9.4% of the hemodialysis patients were chronic carriers of hepatitis B virus (HBV (range 1.8% - 20.4%, while 48.9% showed markers of previous HBV infection. The HBV attack rate was 4.5% per year (range 0% - 6%. These results indicate an alarming high prevalence of anti-HCV among hemodialysis patients of this studied region.Aproximadamente 400 pacientes de hemodiálise tratados em 5 diferentes unidades no Rio de Janeiro foram acompanhados durante 1 ano para presença de marcadores virais de hepatite B e C. Durante o mesmo período, amostras foram também de 35 pacientes ambulatoriais de diálise peritonial contínua (CAPD e de 242 funcionários das unidades. Dependendo da unidade em estudo foram detectadas prevalências de anti-HCV variando de 47% a 82% (média 65%. Pacientes de CAPD demonstraram uma baixa prevalência de 17%. A prevalência de anti-HCV em funcionários foi de 2.9%. Observamos uma taxa de ataque de hepatite C de 11.5% por ano na população paciente de hemodiálise anti-HCV-negativo. Uma média de 9.4% de pacientes de hemodiálise eram portadores crônicos do vírus da hepatite B (VHB (taxa de 1.8% a 20.4%, enquanto 48.9% apresentaram marcadores de infecção passada de HBV. A taxa de ataque de HBV foi de 4.5% por ano (taxa de 0% a

  16. Massa óssea em crianças e adolescentes que vivem com vírus da imunodeficiência humana Bone mass in children and adolescents infected with human immunodeficiency virus

    Directory of Open Access Journals (Sweden)

    Luiz R. A. de Lima

    2013-02-01

    Full Text Available OBJETIVO: Descrever a densidade mineral óssea (DMO e conteúdo mineral ósseo (CMO de crianças e adolescentes que vivem com o vírus da imunodeficiência humana e comparar com os dados do National Health and Nutrition Examination Survey IV (NHANES IV. MÉTODO: Participaram do estudo48 crianças e adolescentes (sete a 17 anos de idade com infecção pelo vírus da imunodeficiência humana adquirida por transmissão vertical. A DMO e o CMO foram mensurados pela absorciometria por dupla emissão de raios-X, calculando-se escores-z com base nos dados do NHANES IV. Nos prontuários médicos foram obtidas as informações dos parâmetros clínicos e laboratoriais da infecção pelo vírus da imunodeficiência humana. Foram ainda avaliada a atividade física, a ingestão de cálcio e a maturação esquelética. Utilizaram-se procedimentos da estatística descritiva e inferencial, estabelecendo níveis de significância de 5%. RESULTADOS :Os pacientes soropositivos demonstraram valores inferiores comparados aos dados do NHANES IV em todos os escores-z da massa óssea (média = -0,52 a -1,22, dp = 0,91 e 0,84, respectivamente. Com base no z-DMOsubtotal, há uma prevalência de 16,7% de crianças e adolescentes com massa óssea reduzida para a idade. Indivíduos que utilizaram inibidores de protease apresentaram um z-DMOtotal inferior, comparado ao grupo que não utilizou (-1,31 vs. -0,79; p = 0,02. Não foram encontradas diferenças na massa óssea em relação ao nível de atividade física e ingestão de cálcio. CONCLUSÕES: Na presente amostra, crianças e adolescentes que vivem com o vírus da imuno deficiência humana possuem baixa massa óssea para idade, e o uso de inibidores de protease parece estar relacionado a tais reduções.OBJECTIVE: To describe bone mineral density (BMD and bone mineral content (BMC in children and adolescents infected with the human immunodeficiency virus (HIV, and to compare them with data from the National Health and

  17. Caracterização antigênica e molecular de oito amostras do vírus da doença de Aujeszky isoladas no estado do Rio Grande do Sul em 2003 Antigenic and molecular characterization of eight samples of Aujeszky's disease virus isolated in the state of Rio Grande do Sul, Brazil, in 2003

    Directory of Open Access Journals (Sweden)

    Alessandra D'Ávila da Silva

    2005-03-01

    Full Text Available A doença de Aujeszky ou pseudoraiva (DA, causada pelo vírus da pseudoraiva (PRV é a maior preocupação na produção de suínos. No estado do Rio Grande do Sul, Brasil, a DA foi somente detectada em 1954, em bovino. Em 2003, ocorreram dois surtos de encefalite em granjas na região norte do estado, fronteira com o estado de Santa Catarina. O vírus da doença de Aujeszky (VDA foi isolado a partir de animais coletados em oito granjas distintas da região e submetido a análises antigênicas e moleculares. As amostras de VDA isoladas foram comparadas com as amostras padrão NIA-3 e NP. A caracterização antigênica dos mesmos foi realizada com testes de imunoperoxidase frente a um painel de anticorpos mono-clonais (Mabs preparado contra epitopos de glicoproteinas virais (gB, gC, gD e gE. A caracterização genômica foi realizada através da análise restrição enzimática (REA sobre o genoma total das amostras, com a enzima de restrição (REA Bam HI. O perfil antigênico das oito amostras isoladas no Rio Grande do Sul, bem como os apresentados pelas amostras padrão NIA-3 e NP, foram similares. A REA revelou que todos as oito amostras do Rio Grande do Sul apresentaram um arranjo genômico do tipo II, genótipo frequentemente encontrado em surtos prévios de DA em outros estados do Brasil. Os resultados aqui obtidos indicam que as oito amostras isoladas no Rio Grande do Sul são similares.Pseudorabies or Aujeszky's disease (AD, caused by pseudorabies virus (PRV is a major concern in swine production. In the state of Rio Grande do Sul, Brazil, AD was only detected in 1954, in cattle. In 2003 two outbreaks of encephalitis occurred on the northern region of the state, close to the border with the state of Santa Catarina. Pseudorabies virus (PRV was isolated from distinct farms within the region and subjected to antigenic and genomic analyses. These isolates were compared with prototype strains NIA-3 and NP. Antigenic characterization with a

  18. Ability of Aphis gossypii and Myzus persicae to Transmit Cucumber mosaic virus in Single and Mixed Infection with Two Potyviruses to Zucchini Squash Eficiência dos afídeos Aphis gossypii e Myzus persicae na transmissão do Cucumber mosaic virus em infecção simples e mista com dois Potyvirus para abobrinha de moita

    OpenAIRE

    Zayame Vegette Pinto; Jorge Alberto Marques Rezende; Valdir Atsushi Yuki; Sônia Maria de Stefano Piedade

    2008-01-01

    The main objective of this work was to investigate the ability of Aphis gossypii and Myzus persicae to transmit Cucumber mosaic virus (CMV) singly and mixed with two potyviruses (Papaya ringspot virus - type W, PRSV-W and Zucchini yellow mosaic virus, ZYMV), to zucchini squash plants (Cucurbita pepo). The results showed that the potyviruses in general were more efficiently transmitted by both species of aphids as compared to CMV. The transmission of PRSV-W, ZYMV and CMV separately was more ef...

  19. <em>α>-Glucosidase Inhibitory Constituents from <em>Acanthopanax senticosusem> Harm Leaves

    Directory of Open Access Journals (Sweden)

    Hai-Xue Kuang

    2012-05-01

    Full Text Available A new triterpene glycoside, 3-<em>O-[(α>-L-rhamnopyranosyl(1→2]-[<em>β>-D-glucuronopyranosyl-6-<em>O>-methyl ester]-olean-12-ene-28-olic acid (1 and a new indole alkaloid, 5-methoxy-2-oxoindolin-3-acetic acid methyl ester (5 were isolated from the leaves of <em>Acanthopanax senticosusem> Harms along with six known compounds. The structures of the new compounds were determined by means of 2D-NMR experiments and chemical methods. All the isolated compounds were evaluated for their glycosidase inhibition activities and compound 6 showed significant <em>α>-glucosidase inhibition activity.

  20. Co-infecção por Mycobacterium tuberculosis e vírus da imunodeficiência humana: uma análise epidemiológica em Taubaté (SP Co-infection with Mycobacterium tuberculosis and human immunodeficiency virus: an epidemiological analysis in the city of Taubaté, Brazil

    Directory of Open Access Journals (Sweden)

    Luiz Gustavo Miranda de Carvalho

    2006-10-01

    Full Text Available OBJETIVO: Discutir os principais aspectos da co-infecção por Mycobacterium tuberculosis e vírus da imunodeficiência humana no município de Taubaté (SP nos anos de 2001 e 2002. MÉTODOS: Este trabalho apresenta o levantamento epidemiológico dos casos de tuberculose ocorridos em Taubaté em 2001 e 2002. RESULTADOS: Foram analisados 250 casos de tuberculose, dos quais 70 corresponderam a casos de sorologia positiva para o vírus da imunodeficiência humana (28%, 95 de sorologia negativa (38%, e para 85 pacientes a sorologia não foi realizada (34%. Com relação ao primeiro grupo houve predomínio do sexo masculino e da faixa etária de 30 a 40 anos, a forma clínica de tuberculose mais comum foi a pulmonar (65,71% e a taxa de cura foi de 59,38% . No grupo de pacientes para os quais não se comprovou a co-infecção também predominou o sexo masculino e ocorrência na mesma faixa etária, sendo a forma clínica mais comum também a pulmonar (70,55% e a taxa de cura foi de 81,63%. CONCLUSÃO: Concluiu-se que o vírus da imunodeficiência humana é importante na epidemiologia da tuberculose e, portanto, o teste sorológico para o vírus da imunodeficiência humana deve ser realizado quando se diagnostica a presença de tuberculose.OBJECTIVE: To discuss the main aspects of co-infection with Mycobacterium tuberculosis and human immunodeficiency virus in the city of Taubaté (located in the state of São Paulo, Brazil in 2001 and 2002. METHODS: This study presents epidemiological data on tuberculosis cases occurring in Taubaté in 2001 and 2002. RESULTS: Of the 250 cases of tuberculosis analyzed, 70 (28% presented human immunodeficiency virus seropositivity, 95 (38% presented human immunodeficiency virus seronegativity, and 85 (34% were patients who had not been submitted to serological testing. In the first group (tuberculosis and human immunodeficiency virus seropositivity, males from 30 to 40 years of age predominated, the most common clinical

  1. Antibody to human T-lymphotropic virus in a patient with Guillain-Barré syndrome (case report Anticorpo para o vírus linfotrópico humano T em um paciente com a síndrome de Guillain-Barré

    Directory of Open Access Journals (Sweden)

    C.M. Nakauchi

    1991-08-01

    Full Text Available Serum sample obtained from a male, 12 year old patient suffering from Guillain-Barré syndrome (GBS was positive for human T-lymphotropic virus (HTLV-I antibody by the enzyme-linked immunosorbent assay (ELISA and the Western Blot analysis (WB. Attempts to isolate enteroviruses (including poliovirus from faecal material in both tissue culture and suckling mice were unsuccessful; in addition, acute and convalescent paired serum samples did not show any evidence of recent poliovirus infection when tested against the three serotypes. Specific tests for detection of Epstein-Barr virus infection were not performed; however, the Paul-Bunnel test yielded negative results. ELISA for detection of anti-cytomegalovirus IgM was also negative. The concomitant occurrence of either adult T cell leukemia (ATL or lymphoma was not recorded in this case.Amostra de soro obtida de paciente com a síndrome de Guillain-Barré revelou-se positiva quanto à presença de anticorpos para o vírus linfotrópico humano T (HTLV-I pelo método imuno-enzimático (ELISA e a análise por "Western-Blot". Resultaram negativos os testes visando à detecção de enterovírus (incluindo poliovírus a partir de material fecal, tanto em cultura de tecidos como em camundongos recém-nascidos; exames com amostras de soro aguda e convalescente não exibiram qualquer evidência de infecção recente pelos três tipos de poliovírus. O teste de Paul-Bunnel, assim como o "ELISA" para a detecção de IgM anti-citomegalovírus resultaram negativos. Não foi registrada, no presente caso, quer a leucemia adulta de células T, quer linfomas.

  2. Host ecology determines the dispersal patterns of a plant virus.

    Science.gov (United States)

    Trovão, Nídia Sequeira; Baele, Guy; Vrancken, Bram; Bielejec, Filip; Suchard, Marc A; Fargette, Denis; Lemey, Philippe

    2015-01-01

    Since its isolation in 1966 in Kenya, rice yellow mottle virus (RYMV) has been reported throughout Africa resulting in one of the economically most important tropical plant emerging diseases. A thorough understanding of RYMV evolution and dispersal is critical to manage viral spread in tropical areas that heavily rely on agriculture for subsistence. Phylogenetic analyses have suggested a relatively recent expansion, perhaps driven by the intensification of agricultural practices, but this has not yet been examined in a coherent statistical framework. To gain insight into the historical spread of RYMV within Africa rice cultivations, we analyse a dataset of 300 coat protein gene sequences, sampled from East to West Africa over a 46-year period, using Bayesian evolutionary inference. Spatiotemporal reconstructions date the origin of RMYV back to 1852 (1791-1903) and confirm Tanzania as the most likely geographic origin. Following a single long-distance transmission event from East to West Africa, separate viral populations have been maintained for about a century. To identify the factors that shaped the RYMV distribution, we apply a generalised linear model (GLM) extension of discrete phylogenetic diffusion and provide strong support for distances measured on a rice connectivity landscape as the major determinant of RYMV spread. Phylogeographic estimates in continuous space further complement this by demonstrating more pronounced expansion dynamics in West Africa that are consistent with agricultural intensification and extensification. Taken together, our principled phylogeographic inference approach shows for the first time that host ecology dynamics have shaped the historical spread of a plant virus.

  3. Near-atomic-resolution cryo-EM for molecular virology.

    Science.gov (United States)

    Hryc, Corey F; Chen, Dong-Hua; Chiu, Wah

    2011-08-01

    Electron cryo-microscopy (cryo-EM) is a technique in structural biology that is widely used to solve the three-dimensional structures of macromolecular assemblies, close to their biological and solution conditions. Recent improvements in cryo-EM and single-particle reconstruction methodologies have led to the determination of several virus structures at near-atomic resolution (3.3 - 4.6 Å). These cryo-EM structures not only resolve the Cα backbones and side-chain densities of viral capsid proteins, but also suggest functional roles that the protein domains and some key amino acid residues play. This paper reviews the recent advances in near-atomic-resolution cryo-EM for probing the mechanisms of virus assembly and morphogenesis.

  4. Computer Virus

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    Computer viruses are small software programs that are designed to spread from one computerto another and to interfere with computer operation.A virus might delete data on your computer,use your e-mail program to spread itself to othercomputers,or even erase everything on your hard disk.Viruses are most easily spread by attach-ments in e-mail messages or instant messaging messages.That is why it is essential that you never

  5. Soroprevalência das infecções por parvovírus, adenovírus, coronavírus canino e pelo vírus da cinomose em cães de Santa Maria, Rio Grande do Sul, Brasil Seroprevalence of parvovirus, adenovirus, coronavirus and canine distemper virus infections in dogs of Santa Maria, Rio Grande do Sul, Brazil

    Directory of Open Access Journals (Sweden)

    Renata Dezengrini

    2007-02-01

    Full Text Available As infecções pelo vírus da cinomose (CDV, por parvovírus (CPV, adenovírus (CAV e coronavírus (CCoV são importantes causas de morbidade e de mortalidade em cães de todo o mundo, porém pouco se sabe sobre a sua incidência e prevalência no Brasil. Para determinar-se a prevalência dessas infecções na população canina de Santa Maria, RS, Brasil, amostras de sangue foram coletadas de 817 cães não-vacinados de 14 bairros do município e testadas para a presença de anticorpos específicos. Anticorpos contra o CDV foram detectados em 27,3% (223/817 das amostras, contra o CPV em 68,7% (561/817, contra o CAV em 43% (353/817 e contra o CCoV em 50,4% (412/817 dos cães. Observou-se um aumento gradativo da prevalência de anticorpos de acordo com a idade para o CDV, o CAV e o CCoV. Os índices de positividade para o CPV, o CAV e o CCoV foram um pouco superiores entre machos, e semelhantes entre os sexos para o CDV. Os animais que convivem com outros cães em casa ou na rua apresentaram prevalência maior de anticorpos para o CDV e o CCoV do que cães sem contato ou convívio, enquanto que, para o CPV e o CAV, não houve diferença. Esses resultados demonstram que esses vírus estão difundidos na população canina dos bairros da cidade. Por outro lado, demonstram também que uma parte considerável da população é soronegativa e, portanto, está desprotegida frente a esses agentes, indicando a necessidade de se ampliar a cobertura vacinal.Canine distemper virus (CDV, parvovirus (CPV, adenovirus (CAV and coronavirus (CCoV infections have been associated with significant morbidity and mortality among dogs worldwide yet very little is known about these infections in Brazil. As to determine the prevalence of these infections in the canine population of Santa Maria, RS, Brazil, 817 blood samples were collected from non-vaccinated dogs of 14 neighborhoods and tested for specific antibodies. Antibodies to CDV were detected in 27.3% (223/817 of

  6. RT-PCR em pools de soros sangüíneos para o diagnóstico da infecção aguda e de animais persistentemente infectados pelo vírus da diarréia viral bovina RT-PCR in pools of bovine blood serum to detect acute infection and persistently infected animals with bovine viral diarrhea virus

    Directory of Open Access Journals (Sweden)

    D. Pilz

    2007-02-01

    Full Text Available Utilizou-se a técnica da RT-PCR para a detecção da região 5' UTR do genoma do vírus da diarréia viral bovina (BVDV em pools de soros sangüíneos provenientes de um rebanho, constituído por 226 animais, que apresentava distúrbios da reprodução. A partir das amostras individuais de soro e de acordo com a categoria dos animais e o número de animais por categoria foram formados 10 pools (A a J de soros. A primeira avaliação revelou a amplificação de um produto com 290pb nas reações referentes aos grupos D (35 vacas e H (25 bezerros lactentes que, após o desmembramento em amostras individuais, resultou na identificação de 11 vacas lactantes e 12 bezerros em amamentação positivos. Para a identificação de animais persistentemente infectados (PI entre os 23 positivos na primeira avaliação, realizou-se a segunda colheita de soros sangüíneos, três meses após. A RT-PCR das amostras individuais de soro revelou resultado positivo em cinco bezerros. Em dois, foi possível isolar o BVDV em cultivo de células MDBK. A especificidade das reações da RT-PCR foi confirmada pelo seqüenciamento dos produtos amplificados a partir do soro de uma vaca com infecção aguda, de um bezerro PI e das duas amostras do BVDV isoladas em cultivo celular. A utilização da RT-PCR em pools de soros sangüíneos demonstrou ser uma estratégia rápida de diagnóstico etiológico e de baixo custo tanto para a detecção de infecção aguda quanto de animais PI.The 5' untranslated region of the bovine viral diarrhea virus (BVDV genome was detected by RT-PCR assay in pools of blood sera samples collected from a cattle herd (n=226 animals with reproductive failures. Based on the classes of animal and the number of animals per class, the individual blood serum samples were distributed in 10 sera pools (A to J. During the first evaluation a 290bp amplicon was amplified in reactions from groups D (35 cows and H (25 sucking calves. The individual analysis

  7. Three New Myrsinol Diterpenes from <em>Euphorbia proliferaem> and Their Neuroprotective Activities

    Directory of Open Access Journals (Sweden)

    Yuanqiang Guo

    2012-08-01

    Full Text Available Three new myrsinol diterpenes were isolated from the roots of<em> em>>Euphorbia proliferaem>. Their structures were elucidated as 2<em>α-O>-isobutyryl-3<em>β>,5<em>α>,7<em>β>,10,15<em>β-penta-O>-acetyl-14<em>α-O>-benzoyl-10,18-dihydromyrsinol (1, 2<em>α-O>-isobutyryl-3<em>β-O>-propion-yl-5<em>α>,7<em>β>,10,15<em>β-tetra-O>-acetyl-10,18-dihydromyrsinol (2, and 2<em>α>,14<em>α-di-O>-benzoyl-3<em>β>,5<em>α>,7<em>β>,10,15<em>β-penta-O>-acetyl-10,18-dihydromyrsinol (3 on the basis of spectroscopic data analyses (IR, ESI-MS, HR-ESI-MS, and 1D and 2D NMR. Their neuroprotective activities were evaluated and compounds 1 and 2 showed neuroprotective effects against MPP+-induced neuronal cell death in SH-SY5Y cells.

  8. Molecular variability analyses of Apple chlorotic leaf spot virus capsid protein

    Indian Academy of Sciences (India)

    T Rana; V Chandel; Y Kumar; R Ram; V Hallan; A A Zaidi

    2010-12-01

    The complete sequences of the coat protein (CP) gene of 26 isolates of Apple chlorotic leaf spot virus (ACLSV) from India were determined. The isolates were obtained from various pome (apple, pear and quince) and stone (plum, peach, apricot, almond and wild Himalayan cherry) fruit trees. Other previously characterized ACLSV isolates and Trichoviruses were used for comparative analysis. Indian ACLSV isolates among themselves and with isolates from elsewhere in the world shared 91–100% and 70–98% sequence identities at the amino acid and nucleotide levels, respectively. The highest degree of variability was observed in the middle portion with 9 amino acid substitutions in contrast to the N-terminal and C-terminal ends, which were maximally conserved with only 4 amino acid substitutions. In phylogenetic analysis no reasonable correlation between host species and/or geographic origin of the isolates was observed. Alignment with capsid protein genes of other Trichoviruses revealed the TaTao ACLSV peach isolate to be phylogenetically closest to Peach mosaic virus, Apricot pseudo chlorotic leaf spot virus and Cherry mottle leaf virus. Recombination analysis (RDP3 ver.2.6) done for all the available ACLSV complete CP sequences of the world and Indian isolates indicate no significant evidence of recombination. However, one recombination event among Indian ACLSV-CP isolates was detected. To the best of our knowledge, this is the first report of complete CP sequence variability study from India and also the first evidence of homologous recombination in ACLSV.

  9. Identification and Molecular Characterization of Odontoglosum Ringspot Virus (ORSV from Bogor, Indonesia

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    IRWAN LAKANI

    2010-06-01

    Full Text Available Recently, field surveys were conducted in several orchid nurseries in Bogor (West Java, Magelang (Central Java and Malang (East Java. We found that most of the commercially orchids sampled from Bogor was infected by virus-like disease. The symptoms depend on the orchid species. Thus, the symptoms varied such as mottle, mosaic and necrotic flecks either on the leaves or on the flowers. Similiar symptoms were not found in samples obtained from Central Java and East Java. A Tobamo-like virus was inferred to be possible cause of the viral disease-like symptoms. Serological test of the samples by ELISA showed positive against Odontoglosum Ringspot Virus (ORSV antibody and was negative against Cymbidium Mosaic Virus (CyMV antibody. Total RNA was extracted from symptomatic plants and RT-PCR was carried out by using a pair of coat protein (CP gene primer of ORSV. It was successfully amplified a 500 bp of DNA fragment and it was directly sequenced. The nucleotide sequence of CP gene had confirmed the identity of ORSV. Phylogenetic analysis based on the CP nucleotide sequences were grouped into only one major cluster. The ORSV isolate from Bogor (Sd 21 and the other isolates were clustered in the same group and had highest nucleotide homology (99%. These results provide first evidence of ORSV infecting orchids in Bogor, Indonesia.

  10. Characterization of Cestrum yellow leaf curling virus: a new member of the family Caulimoviridae.

    Science.gov (United States)

    Stavolone, Livia; Ragozzino, Antonio; Hohn, Thomas

    2003-12-01

    Cestrum yellow leaf curling virus (CmYLCV) has been characterized as the aetiological agent of the Cestrum parqui mosaic disease. The virus genome was cloned and the clone was proven to be infectious to C. parqui. The presence of typical viroplasms in virus-infected plant tissue and the information obtained from the complete genomic sequence confirmed CmYLCV as a member of the Caulimoviridae family. All characteristic domains conserved in plant pararetroviruses were found in CmYLCV. Its genome is 8253 bp long and contains seven open reading frames (ORFs). Phylogenetic analysis of the relationships with other members of the Caulimoviridae revealed that CmYLCV is closely related to the Soybean chlorotic mottle virus (SbCMV)-like genus and particularly to SbCMV. However, in contrast to the other members of this genus, the primer-binding site is located in the intercistronic region following ORF Ib rather than within this ORF, and an ORF corresponding to ORF VII is missing.

  11. Seasonal phenology of Amphorophora agathonica (Hemiptera: Aphididae) and spread of viruses in red raspberry in Washington.

    Science.gov (United States)

    Lightle, D M; Quito-Avila, D; Martin, R R; Lee, J C

    2014-04-01

    Amphorophora agathonica (Hottes) is the primary vector of aphid-transmitted viruses in red raspberry in the Pacific Northwest region of the United States. To better understand the biology of the aphid, we estimated the lower developmental threshold and studied the seasonal activity of A. agathonica in commercial fields in northern Washington state. In addition, we monitored the spread of raspberry viruses (raspberry latent virus and raspberry leaf mottle virus, RLMV) to determine how rapidly fields became infected and whether there was a relationship between aphid presence and infection. The lower developmental threshold of A. agathonica was estimated to be 2.7°C. In the field, apterous and alate aphid populations began rapidly increasing at ≍800 growing degree-days and peaked at 1,050 growing degree-days. RLMV spread rapidly, with 30-60% of plants in four different commercial fields testing positive after three growing seasons. There was no discernible relationship between the presence or abundance of aphids based on 10 leaves sampled per plant location, and the odds of that plant becoming infected with RLMV.

  12. Examining the Heterogeneous Genome Content of Multipartite Viruses BMV and CCMV by Native Mass Spectrometry

    Science.gov (United States)

    van de Waterbeemd, Michiel; Snijder, Joost; Tsvetkova, Irina B.; Dragnea, Bogdan G.; Cornelissen, Jeroen J.; Heck, Albert J. R.

    2016-06-01

    Since the concept was first introduced by Brian Chait and co-workers in 1991, mass spectrometry of proteins and protein complexes under non-denaturing conditions (native MS) has strongly developed, through parallel advances in instrumentation, sample preparation, and data analysis tools. However, the success rate of native MS analysis, particularly in heterogeneous mega-Dalton (MDa) protein complexes, still strongly depends on careful instrument modification. Here, we further explore these boundaries in native mass spectrometry, analyzing two related endogenous multipartite viruses: the Brome Mosaic Virus (BMV) and the Cowpea Chlorotic Mottle Virus (CCMV). Both CCMV and BMV are approximately 4.6 megadalton (MDa) in mass, of which approximately 1 MDA originates from the genomic content of the virion. Both viruses are produced as mixtures of three particles carrying different segments of the genome, varying by approximately 0.1 MDA in mass (~2%). This mixture of particles poses a challenging analytical problem for high-resolution native MS analysis, given the large mass scales involved. We attempt to unravel the particle heterogeneity using both Q-TOF and Orbitrap mass spectrometers extensively modified for analysis of very large assemblies. We show that manipulation of the charging behavior can provide assistance in assigning the correct charge states. Despite their challenging size and heterogeneity, we obtained native mass spectra with resolved series of charge states for both BMV and CCMV, demonstrating that native MS of endogenous multipartite virions is feasible.

  13. 柚类果树叶片斑驳病的病原鉴定与检测%Identification and detection of pathogen causing mottle leaf of pomelo

    Institute of Scientific and Technical Information of China (English)

    田亚南; 柯穗; 李韬; 徐平东; 柯冲

    1999-01-01

    Pomelo is a group of popular cultivars of citrus in China. In recent years, diseased plants of pomelo have been found in Fujian production areas. The symptoms of the diseased trees include leaf mottle, small fruit and stunting. The disease is graft-transmissible from diseased plant to healthy pomelo and ponkan via tissue grafting. The morphological characteristics of the pathogen resemble those of Liberobacter asiaticum which causes citrus Huanglongbing (formerly "citrus greening") based on electron microscopy. The PCR products of pathogen DNA obtained with gene-specific primers for Huanglongbing liberobacter and Southern hybridization of the PCR products with oligonucleotide probe specific for the liberobacter pathogen show that there is a remarkable degree of DNA homogeneity between the pathogen from diseased pomelo and that of citrus Huanglongbing plants. Taken together, the results of this study show that the causative agent of pomelo disease is either identical or very closely related to the Liberobacter asiaticum which causes citrus Huanglongbing.%柚类是柑桔中的一类重要品种,在我国有广泛的分布.近年来,在福建等产区发现柚类病树日趋增多,其病状为叶片斑驳、小果、植株矮化,暂称为叶片斑驳病.本病能通过组织嫁接从病柚树传染到柚健苗和芦柑健苗.在电镜下观察,其病原菌体的形态和细胞壁构造与柑桔黄龙病的病原(Liberobacter asiaticum)十分相似.应用柑桔黄龙病病原DNA的特异性引物进行PCR试验产生的PCR 产物,其分子量与柑桔黄龙病病原DNA PCR 产物的基本相同,为563 bp.;以及应用柑桔黄龙病病原的特异性探针与其PCR 产物进行Southern 杂交试验,能产生杂交反应;这些都表明在柚树病原DNA与柑桔黄龙病病原DNA之间存在着十分高度的同源性.综上结果证明:柚类叶片斑驳的病原很可能与柑桔黄龙病病原是相同的,或其关系是十分密切的.

  14. The condensation of water on adsorbed viruses.

    Science.gov (United States)

    Alonso, José María; Tatti, Francesco; Chuvilin, Andrey; Mam, Keriya; Ondarçuhu, Thierry; Bittner, Alexander M

    2013-11-26

    The wetting and dewetting behavior of biological nanostructures and to a greater degree single molecules is not well-known even though their contact with water is the basis for all biology. Here, we show that environmental electron microscopy (EM) can be applied as a means of imaging the condensation of water onto viruses. We captured the formation of submicrometer water droplets and filaments on single viral particles by environmental EM and by environmental transmission EM. The condensate structures are compatible with capillary condensation between adsorbed virus particles and with known droplet shapes on patterned surfaces. Our results confirm that such droplets exist down to evaporation cycle as expected from their stability in air and water. Moreover we developed procedures that overcome problems of beam damage and of resolving structures with a low atomic number.

  15. Phytophthora viruses.

    Science.gov (United States)

    Cai, Guohong; Hillman, Bradley I

    2013-01-01

    Phytophthora sp. is a genus in the oomycetes, which are similar to filamentous fungi in morphology and habitat, but phylogenetically more closely related to brown algae and diatoms and fall in the kingdom Stramenopila. In the past few years, several viruses have been characterized in Phytophthora species, including four viruses from Phytophthora infestans, the late blight pathogen, and an endornavirus from an unnamed Phytophthora species from Douglas fir. Studies on Phytophthora viruses have revealed several interesting systems. Phytophthora infestans RNA virus 1 (PiRV-1) and PiRV-2 are likely the first members of two new virus families; studies on PiRV-3 support the establishment of a new virus genus that is not affiliated with established virus families; PiRV-4 is a member of Narnaviridae, most likely in the genus Narnavirus; and Phytophthora endornavirus 1 (PEV1) was the first nonplant endornavirus at the time of reporting. Viral capsids have not been found in any of the above-mentioned viruses. PiRV-1 demonstrated a unique genome organization that requires further examination, and PiRV-2 may have played a role in late blight resurgence in 1980s-1990s.

  16. Computer Virus

    Institute of Scientific and Technical Information of China (English)

    高振桥

    2002-01-01

    If you work with a computer,it is certain that you can not avoid dealing, with at least one computer virus.But how much do you know about it? Well,actually,a computer virus is not a biological' one as causes illnesses to people.It is a kind of computer program

  17. Molecular characterization and experimental host range of an isolate of Wissadula golden mosaic St. Thomas virus.

    Science.gov (United States)

    Collins, A M; Mujaddad-ur-Rehman, Malik; Brown, J K; Reddy, C; Wang, A; Fondong, V; Roye, M E

    2009-12-01

    Partial genome segments of a begomovirus were previously amplified from Wissadula amplissima exhibiting yellow-mosaic and leaf-curl symptoms in the parish of St. Thomas, Jamaica and this isolate assigned to a tentative begomovirus species, Wissadula golden mosaic St. Thomas virus. To clone the complete genome of this isolate of Wissadula golden mosaic St. Thomas virus, abutting primers were designed to PCR amplify its full-length DNA-A and DNA-B components. Sequence analysis of the complete begomovirus genome obtained, confirmed that it belongs to a distinct begomovirus species and this isolate was named Wissadula golden mosaic St. Thomas virus-[Jamaica:Albion:2005] (WGMSTV-[JM:Alb:05]). The genome of WGMSTV-[JM:Alb:05] is organized similar to that of other bipartite Western Hemisphere begomoviruses. Phylogenetic analyses placed the genome components of WGMSTV-[JM:Alb:05] in the Abutilon mosaic virus clade and showed that the DNA-A component is most closely related to four begomovirus species from Cuba, Tobacco leaf curl Cuba virus, Tobacco leaf rugose virus, Tobacco mottle leaf curl virus, and Tomato yellow distortion leaf virus. The putative Rep-binding-site motif in the common region of WGMSTV-[JM:Alb:05] was observed to be identical to that of Chino del tomate virus-Tomato [Mexico:Sinaloa:1983], Sida yellow mosaic Yucatan virus-[Mexico:Yucatan:2005], and Tomato leaf curl Sinaloa virus-[Nicaragua:Santa Lucia], suggesting that WGMSTV-[JM:Alb:05] is capable of forming viable pseudo-recombinants with these begomoviruses, but not with other members of the Abutilon mosaic virus clade. Biolistic inoculation of test plant species with partial dimers of the WGMSTV-[JM:Alb:05] DNA-A and DNA-B components showed that the virus was infectious to Nicotiana benthamiana and W. amplissima and the cultivated species Phaseolus vulgaris (kidney bean) and Lycopersicon esculentum (tomato). Infected W. amplissima plants developed symptoms similar to symptoms observed under field

  18. Neonatal Phosphate Nutrition Alters <em>in em>Vivo> and <em>in em>Vitro> Satellite Cell Activity in Pigs

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    Chad H. Stahl

    2012-05-01

    Full Text Available Satellite cell activity is necessary for postnatal skeletal muscle growth. Severe phosphate (PO4 deficiency can alter satellite cell activity, however the role of neonatal PO4 nutrition on satellite cell biology remains obscure. Twenty-one piglets (1 day of age, 1.8 ± 0.2 kg BW were pair-fed liquid diets that were either PO4 adequate (0.9% total P, supra-adequate (1.2% total P in PO4 requirement or deficient (0.7% total P in PO4 content for 12 days. Body weight was recorded daily and blood samples collected every 6 days. At day 12, pigs were orally dosed with BrdU and 12 h later, satellite cells were isolated. Satellite cells were also cultured <em>in vitroem> for 7 days to determine if PO4 nutrition alters their ability to proceed through their myogenic lineage. Dietary PO4 deficiency resulted in reduced (<em>P> < 0.05 sera PO4 and parathyroid hormone (PTH concentrations, while supra-adequate dietary PO4 improved (<em>P> < 0.05 feed conversion efficiency as compared to the PO4 adequate group. <em>In vivoem> satellite cell proliferation was reduced (<em>P> < 0.05 among the PO4 deficient pigs, and these cells had altered <em>in vitroem> expression of markers of myogenic progression. Further work to better understand early nutritional programming of satellite cells and the potential benefits of emphasizing early PO4 nutrition for future lean growth potential is warranted.

  19. Tomato chlorotic leaf distortion virus, a new bipartite begomovirus infecting Solanum lycopersicum and Capsicum chinense in Venezuela.

    Science.gov (United States)

    Zambrano, Karla; Geraud-Pouey, Francis; Chirinos, Doris; Romay, Gustavo; Marys, Edgloris

    2011-12-01

    Virus isolate T217L was obtained from a diseased tomato (Solanum lycopersicum) plant showing leaf deformation and chlorotic mottle symptoms near Maracaibo in the state of Zulia, Venezuela. Full-length DNA-A and DNA-B molecules of T217L were cloned and sequenced. The genome organization of T217L was identical to the bipartite genomes of other begomoviruses described from the Americas. Characteristic disease symptoms were reproduced in S. lycopersicum and Capsicum annum plants inoculated using the cloned viral DNA-A and DNA-B components, confirming disease aetiology. A sequence analysis of DNA-A showed that the T217L isolate has the highest sequence identity (84%) with sida yellow mosaic Yucatan virus (SiYMYuV), sida golden mosaic Honduras virus (SiGMHV) and bean dwarf mosaic virus (BDMV) isolates. This is less than the 89% identity in the DNA-A component that has been defined as the threshold value for the demarcation of species in the genus Begomovirus. The molecular data show that isolate T217L belongs to a novel tentative begomovirus species, for which the name tomato chlorotic leaf distortion virus is proposed. TCLDV was also detected in symptomatic C. chinense plants growing near the T217L-infected plant.

  20. Constituents from <em>Vigna em>vexillata> and Their Anti-Inflammatory Activity

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    Guo-Feng Chen

    2012-08-01

    Full Text Available The seeds of <em>Vigna em>genus are important food resources and there have already been many reports regarding their bioactivities. In our preliminary bioassay, the chloroform layer of methanol extracts of<em> V. vexillata em>demonstrated significant anti-inflammatory bioactivity. Therefore, the present research is aimed to purify and identify the anti-inflammatory principles of <em>V. vexillataem>. One new sterol (1 and two new isoflavones (2,3 were reported from the natural sources for the first time and their chemical structures were determined by the spectroscopic and mass spectrometric analyses. In addition, 37 known compounds were identified by comparison of their physical and spectroscopic data with those reported in the literature. Among the isolates, daidzein (23, abscisic acid (25, and quercetin (40 displayed the most significant inhibition of superoxide anion generation and elastase release.

  1. Evidence of mixed persistent infections in calves born to cows challenged with a pool of bovine viral diarrhea virus isolates Evidências de infecção persistente mista em bezerros nascidos de vacas inoculadas com um pool de isolados do vírus da diarréia viral bovina

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    Sandra Arenhart

    2010-12-01

    Full Text Available Pregnant cows infected with noncytopathic (NCP isolates of bovine viral diarrhea virus (BVDV between days 40 and 120 days of gestation frequently deliver immunotolerant, persistently infected (PI calves. We herein report the characterization of PI calves produced experimentally through inoculation of pregnant cows with a pool of Brazilian BVDV-1 (n=2 and BVDV-2 isolates (n=2 between days 60 and 90 of gestation. Two calves were born virus positive, lacked BVDV antibodies, but died 7 and 15 days after birth, respectively. Six other calves were born healthy, seronegative to BVDV, harbored and shed virus in secretions for up to 210 days. Analysis of the antigenic profile of viruses infecting these calves at birth and 30 days later with a panel of monoclonal antibodies indicated two patterns of infection. Whereas three calves apparently harbored only one isolate (either a BVDV-1 or BVDV-2, co-infection by two antigenically distinct challenge viruses was demonstrated in three PI calves. Moreover, testing the viruses obtained from the blood of PI calves by an RT-PCR able to differentiate between BVDV-1 and BVDV-2 confirmed the presence/persistence of two co-infecting viruses of different genotypes (BVDV-1 and BVDV-2 in these animals. These findings indicate that persistent infection of fetuses/calves - a well characterized consequence of fetal infection by BVDV - may be established concomitantly by more than one isolate, upon experimental inoculation. In this sense, mixed persistent infections with antigenically distinct isolates may help in understanding the immunological and molecular basis of BVDV immunotolerance and persistence.Vacas prenhes infectadas com isolados não-citopáticos (NCP do vírus da diarréia viral bovina (BVDV entre os dias 40 e 120 de gestação frequentemente produzem bezerros imunotolerantes, persistentemente infectados (PI. Este artigo relata a caracterização de bezerros PI produzidos experimentalmente, pela inoculação de

  2. Evaluation of Virus Reduction by Ultrafiltration with Coagulation-Sedimentation in Water Reclamation.

    Science.gov (United States)

    Lee, Suntae; Hata, Akihiko; Yamashita, Naoyuki; Tanaka, Hiroaki

    2017-04-28

    The evaluation of virus reduction in water reclamation processes is essential for proper assessment and management of the risk of infection by enteric viruses. Ultrafiltration (UF) with coagulation-sedimentation (CS) is potentially effective for efficient virus removal. However, its performance at removing indigenous viruses has not been evaluated. In this study, we evaluated the reduction of indigenous viruses by UF with and without CS in a pilot-scale water reclamation plant in Okinawa, Japan, by measuring the concentration of viruses using the real-time polymerase chain reaction (qPCR). Aichi virus (AiV) and pepper mild mottle virus (PMMoV) were targeted in addition to the main enteric viruses of concern for risk management, namely, norovirus (NoV) genogroups I and II (GI and GII) and rotavirus (RoV). PMMoV, which is a plant pathogenic virus and is present at high concentrations in water contaminated by human feces, has been suggested as a useful viral indicator. We also investigated the reduction of a spiked model virus (F-specific RNA bacteriophage MS2) to measure the effect of viral inactivation by both qPCR and plaque assay. Efficiencies of removal of NoV GI, NoV GII, RoV, and AiV by UF with and without CS were >0.5 to 3.7 log10, although concentrations were below the detection limit in permeate water. PMMoV was the most prevalent virus in both feed and permeate water following UF, but CS pretreatment could not significantly improve its removal efficiency (mean removal efficiency: UF, 3.1 log10; CS + UF, 3.4 log10; t test, P > 0.05). CS increased the mean removal efficiency of spiked MS2 by only 0.3 log10 by qPCR (t-test, P > 0.05), but by 2.8 log10 by plaque assay (t-test, P < 0.01). This difference indicates that the virus was inactivated during CS + UF. Our results suggest that PMMoV could be used as an indicator of removal efficiency in water reclamation processes, but cultural assay is essential to understanding viral fate.

  3. Anticorpos contra o vírus da Doença Infecciosa Bursal e detecção do genoma viral em criações de frango de corte e galinhas de quintal no polo avícola da Bahia Antibodies anti-Infectious Bursal Disease virus and viral genome detection in broilers and chickens backyard at Bahia's poultry production area

    Directory of Open Access Journals (Sweden)

    Priscila Sousa da Silva

    2012-06-01

    Full Text Available Este estudo teve como objetivo determinar a frequência de anticorpos e detectar o genoma viral do vírus da Doença Infecciosa Bursal em criações de frangos de corte e em criações de subsistência localizadas em duas regiões do polo avícola da Bahia. Foram coletadas 758 amostras de soro de frangos de corte e 320 amostras de galinhas de quintal para avaliação da frequência de anticorpos utilizando ELISA indireto. Para a detecção e caracterização do vírus foram coletados 6 pools de bursas de Fabrícius em frangos de corte e 3 pools em criações de subsistência, analisados posteriormente com PCR/RFLP. Os resultados revelaram que não há proteção uniforme na criação comercial nas duas regiões estudadas, sugerindo falha na vacinação e desafio com vírus no ambiente. Também observaram-se altos títulos em galinhas de quintal não vacinadas, com variação nos títulos relacionada com desafios de campo. Nos testes moleculares, verificaram-se que três pools de frangos de corte eram positivos, sendo dois para cepa vacinal (G3 e um para cepa variante (G15. Nas criações de subsistência, houve uma amostra positiva para cepa variante (G15. Os resultados demonstram a necessidade de monitoramento em ambas as criações.The aim of this study was to determine the frequency of antibodies anti-Infectious Bursal Disease Virus as well as to detect the virus in broilers and chicken backyard, raised in two different regions at Bahia's poultry production area. A total of 758 serum samples were collected from broilers and 320 from chicken backyard, in order to assess the frequency of antibodies using an indirect ELISA. For virus detection and characterization it was collected 6 bursal pools from broilers and 3 from chicken backyard, which were further analyzed with PCR/RFLP. The results showed that there is no uniform protection in commercial flocks of the two different regions, suggesting that it may be occurring vaccination errors and

  4. Computer viruses

    Science.gov (United States)

    Denning, Peter J.

    1988-01-01

    The worm, Trojan horse, bacterium, and virus are destructive programs that attack information stored in a computer's memory. Virus programs, which propagate by incorporating copies of themselves into other programs, are a growing menace in the late-1980s world of unprotected, networked workstations and personal computers. Limited immunity is offered by memory protection hardware, digitally authenticated object programs,and antibody programs that kill specific viruses. Additional immunity can be gained from the practice of digital hygiene, primarily the refusal to use software from untrusted sources. Full immunity requires attention in a social dimension, the accountability of programmers.

  5. The Antimicrobial Efficacy of <em>Elaeis guineensisem>: Characterization, <em>in Vitroem> and <em>in Vivoem> Studies

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    Sreenivasan Sasidharan

    2012-04-01

    Full Text Available The urgent need to treat multi-drug resistant pathogenic microorganisms in chronically infected patients has given rise to the development of new antimicrobials from natural resources. We have tested <em>Elaeis guineensis em>Jacq> em>(Arecaceae methanol extract against a variety of bacterial, fungal and yeast strains associated with infections. Our studies have demonstrated that <em>E. guineensisem> exhibits excellent antimicrobial activity <em>in vitroem> and <em>in vivoem> against the bacterial and fungal strains tested. A marked inhibitory effect of the <em>E. guineensisem> extracts was observed against <em>C. albicansem> whereby <em>E. guineensisem> extract at ½, 1, or 2 times the MIC significantly inhibited <em>C. albicansem> growth with a noticeable drop in optical density (OD of the bacterial culture. This finding confirmed the anticandidal activity of the extract on <em>C. albicansem>. Imaging using scanning (SEM and transmission (TEM electron microscopy was done to determine the major alterations in the microstructure of the extract-treated <em>C. albicansem>. The main abnormalities noted via SEM and TEM studies were the alteration in morphology of the yeast cells. <em>In vivoem> antimicrobial activity was studies in mice that had been inoculated with <em>C. albicansem> and exhibited good anticandidal activity. The authors conclude that the extract may be used as a candidate for the development of anticandidal agent.<em> em>

  6. Toxoplasma gondii genotyping in a dog co-infected with distemper virus and ehrlichiosis rickettsia Genotipagem de Toxoplasma gondii em cão co-infectado com o vírus da cinomose e a rickettsia da erliquiose

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    Leandro d'Arc Moretti

    2006-12-01

    Full Text Available This paper reports a toxoplasmosis, erhlichiosis and distemper co-infection in a dog with an exuberant neuropathological clinical picture. Primary involvement was discussed based on information collected in the analysis of the clinical case, such as neurological impairment, epidemiological data, poor immunoprophylactic scheme of the dog affected and the role of these diseases on immunosuppression. Canine distemper and ehrlichiosis were diagnosed based on epidemiologic data, clinical signs, hematological and cytological evaluation. Toxoplasma gondii was isolated and genetically characterized as Type I using restriction analysis (RFLP with SAG-2 genes. Immunosuppression features of both dogs and human beings are discussed, as well as implications on animal and public health. This is the first report on toxoplasmosis, ehrlichiosis and distemper co-infection in a dog in Brazil, associated with genotyping determination of the T. gondii strain involved.Este artigo relata a co-infecção tripla pelos agentes da cinomose, erliquiose e toxoplasmose em um cão com acentuado quadro clínico neuropático. Discute-se a doença primária baseando-se em dados clínicos, epidemiológicos, no protocolo imunoprofilático inadequado e no papel daquelas doenças na imunossupressão. A cinomose e a erliquiose foram diagnosticadas mediante a situação epidemiológica da região e sinais clínicos compatíveis, aliados aos achados de hemograma e citologia. Utilizando-se a análise de restrição (RFLP com os genes SAG-2, caracterizou-se geneticamente a linhagem de Toxoplasma gondii isolada, como pertencente ao Tipo I. Discutem-se aspectos de imunossupressão, tanto em cães quanto em seres humanos, bem como suas implicações em saúde pública e animal. Este é o primeiro relato de infecção tripla pelos agentes da toxoplasmose, erliquiose e cinomose no Brasil, associado com a genotipificação da estirpe de T. gondii envolvida.

  7. Infecção pelo vírus Epstein-Barr em pacientes com lúpus eritematoso sistêmico Epstein-Barr virus infection in patients with systemic lupus erythematosus

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    Samuel Kosminsky

    2006-10-01

    Full Text Available OBJETIVO: Verificar a associação entre a atividade do lúpus eritematoso sistêmico (LES e a avidez das imunoglobulinas IgG anti-EBV. MÉTODOS: Analisou-se o sangue periférico de 66 pacientes distribuídos em dois grupos: 22 pacientes com LES em atividade e 44 pacientes com doença inativa. A presença e o índice de avidez de anticorpos IgG anti-EBV foram determinados pela técnica ELISA. (Enzygnost anti-EBV - Dade Behring. RESULTADOS: Identificou-se positividade no teste de detecção de IgG para EBV em 21 (95,5% pacientes do grupo LES ativo e em 40 (90,9% do grupo LES inativo. O índice de avidez alcançou valores 40 em 54 (88,5% pacientes, sendo 34 (85% do grupo LES inativo e 20 (95,2% do grupo LES ativo; em cinco (12,5% pacientes do grupo LES inativo, este índice ficou entre 20 e 40 e foi inferior a 20 em dois (3,3% pacientes. Adotando-se 20, 30 ou 40 como ponto de corte do índice de avidez, para diagnóstico de reativação da infecção por EBV, foram classificados como infecção reativada, nos grupos LES ativo e inativo, respectivamente: 1 (4,8% x 5 (12,5% pacientes, 1 (4,8% x 4 (10% pacientes e 1 (4,8% x 5 (12,5% pacientes. CONCLUSÃO: No presente estudo, não foi demonstrada associação entre a atividade do LES e a reativação do EBV. Esse fato parece indicar que a não eliminação dos linfócitos B infectados se deve à falha no mecanismo de apoptose ou à ação de linfócitos T citotóxicos, permitindo assim a progressão do LES.OBJECTIVE: To verify the association of SLE activity to the avidity of IgG anti-EBV immune globulins. METHODS: Peripheral blood of 66 patients was analyzed, 22 had active SLE and 44 had inactive SLE. Presence and avidity index of IgG anti-EBV antibodies were determined by the ELISA method (Enzygnost® anti-EBV/IgG - Dade Behring. RESULTS: IgG anti-EBV test was positive for 21 (95.5% patients in the active SLE group and 40 (90.9% in the inactive group. The avidity index was 40 for 54 (88.5% patients

  8. Evaluation of real time PCR technique to diagnosis of human T-lymphotropic virus type I (HTLV-I in patients in the Hematologia da Fundação Hemope Hospital, in Northeastern Brazil Avaliação da técnica de PCR em tempo real para o diagnóstico do virus linfotrópico tipo I de células T humana (HTLV-I em pacientes do Hospital de Hematologia da Fundação Hemope, no Nordeste do Brasil

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    Bruna C. Arruda

    2008-10-01

    Full Text Available As a high degree of homology exists between the proviral genomes of HTLV-I and HTLV-II, there is significant cross-reactivity. Therefore although detection of HTLV antibodies is characteristic of viral infection, it is not sufficient to confirm the presence of the viral type. Molecular tests used to diagnose the HTLV-I/II viruses are based on investigations of proviral genomic sequences, and allow for an infection to be diagnosed prior to the appearance of any sign or symptom. The HTLV proviral load in infected individuals can be determined using real-time PCR, a faster method with less risk of contamination than simple or nested PCR. We analyzed 63 samples from the Hemope Hospital, of which 33 were from HTLV seropositive individuals and 30 from blood donors, to determine the type of virus and the proviral load. The sensitivity of qualitative PCR in comparison to ELISA was 87.5% (95% IC: 70.1 - 95.9% and the specificity was 100% (IC 95%: 85.9 - 100.0%. The sensitivity and specificity of real-time PCR in comparison to the serological test (ELISA were 100% (95% IC: 86.7 - 100.0% and 96.67% (95% IC: 80.9 - 99.8% respectively. The proviral load in the seropositive individuals ranged from 13 to 343820 copies/106 PBMC cells. Our study also observed that individuals with TSP/HAM had a higher proviral load than those who showed no symptoms. The use of real time PCR for routine clinical testing of infected individuals will play a significant role in identifying the virus type and determining the proviral load, thereby providing more appropriate treatment.Como os genomas provirais do HTLV-I e HTLV-II exibem grande homologia, há uma expressiva sororeatividade cruzada. Assim, a detecção de anticorpos anti-HTLV-I/II embora caracterize infecção viral, não permite estabelecer distinção entre os agentes. Os testes moleculares empregados para o diagnóstico dos vírus HTLV-I/II, baseiam-se na pesquisa de seqüências genômicas provirais permitindo o

  9. Peripheral neuropathy in patients with hepatitis virus C infection in the Amazon region Neuropatia periférica em pacientes com infecção pelo vírus C da hepatite na região amazônica

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    Irenio Gomes

    2006-09-01

    Full Text Available INTRODUCTION: Hepatitis virus C (HCV infection is considered a health problem in the State of Acre localized in the Brazilian Amazon which has a prevalence rate of 5.9%. Peripheral neuropathy is a common extra-hepatic manifestation in patients with HCV. OBJECTIVE: To determine the prevalence of peripheral neuropathies using clinical and neurophysiological parameters. METHOD: A cross sectional study was performed in patients assisted by a specialized center of infectious diseases in the State of Acre. All patients completed a clinicoepidemiological questionnaire, physical examination and nerve conduction studies (NCS. RESULTS: We studied 78 patients with mean age 45.5 years (range from 10 to 76 years, two thirds were male, 51% had at least 8 years of formal education and 96% lived in the capital city of Acre State. Roughly 34% of patients complained about paresthesias mainly in upper limbs. The NCS diagnosed multiple mononeuropathy in 11 (14.1%; IC95% 7.6-23.2 patients and carpal tunnel syndrome in 4 (5.1% patients. CONCLUSION: Subclinical involvement of peripheral nerves seems common in patients with HCV, with multiple mononeuropathy the main manifestation of nerve injury in this region as suggested by electrophysiological studies.INTRODUÇÃO: A infecção pelo vírus da hepatite C (VHC é considerada um problema de saúde pública no Estado do Acre com uma prevalência de 5,9%. Neuropatia periférica é uma manifestação extra-hepática comum em pacientes com VHC. OBJETIVO: Determinar a prevalência de neuropatias periféricas através de parâmetros clínicos e neurofisiológicos. MÉTODO: Foi realizado estudo transversal em pacientes atendidos em uma clínica especializada de doenças infecciosas do Estado do Acre. Todos os pacientes foram submetidos a um questionário clínico-epidemiológico, exame físico e eletroneuromiografia (ENMG. RESULTADOS: Foram estudados 78 pacientes, com idade média de 45,5 anos (10 a 76, dois terços eram do

  10. Quantitative studies on resistance to Polymyxa betae and beet necrotic yellow vein virus in beet = Kwantitatief onderzoek naar resistentie tegen Polymyxa betae en het bieterhizomanievirus in de biet

    NARCIS (Netherlands)

    Paul, H.

    1993-01-01

    Beet necrotic yellow vein virus (BNYVV) causes rhizomania in sugar beet. The virus is transmitted by the soil-borne fungus <em>Polymyxa betaeem> . Rhizomania in sugar beet can cause serious losses in sugar yield. Breeding for resistance is the most promising way to control the

  11. Rapid diagnosis of vesicular stomatitis virus in Ecuador by the use of polymerase chain reaction Diagnóstico rápido do vírus da estomatite vesicular no Equador mediante o uso da reação em cadeia da polimerase

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    Lya Madureira Sepúlveda

    2007-09-01

    Full Text Available Vesicular Stomatitis (VS is a viral disease that has a great impact in animal health, as infected animals present marked decrease in meat and milk production. Its presence is a limiting factor for international animal trade. Besides the damage in the livestock productivity, such disease assumes an important role in animal health programs since it is clinically indistinguishable from Foot-and-Mouth Disease. The diagnosis of the VS has been made, mainly, through Complement Fixation, ELISA and Virus Neutralization tests, assays that allow not only for viral detection but also for differentiation of the two serotypes described for Vesicular Stomatitis Virus (VSV: New Jersey (NJ and Indiana (Ind. In this work, a molecular diagnostic approach, the polymerase chain reaction performed after reverse transcription (RT - PCR, based on the specific partial amplification of NS gene of VSV was used, as an alternative method for the detection of the virus. A total of 10 VSV reference samples and 12 specimens collected from animals with clinical signs of vesicular disease obtained from field episodes in Ecuador were tested. The method allowed for the specific partial amplification of the region coding for protein P, both for VSV serotypes New Jersey (642 bp and Indiana 1 (614 bp. The results were compatible with data obtained by Complement Fixation test and the identity of the amplified products was confirmed by nucleotide sequencing.A Estomatite Vesicular (EV é uma enfermidade viral de grande impacto na saúde animal. O animal enfermo apresenta queda na produtividade em rebanho de carne e na produção leiteira, sendo um fator limitante para o comércio internacional de animais. Além dos danos à produtividade essa enfermidade assume importante papel nos programas de saúde animal por ser indistinguível clinicamente da Febre Aftosa. As técnicas para o diagnóstico da EV são, principalmente, a Fixação de Complemento, a ELISA e a Virusneutraliza

  12. Efficient Heterologous Transformation of <em>Chlamydomonas> reinhardtiiem> <em>npq2em> Mutant with the Zeaxanthin Epoxidase Gene Isolated and Characterized from<em> Chlorella zofingiensisem>

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    Herminia Rodríguez

    2012-09-01

    Full Text Available In the violaxanthin cycle, the violaxanthin de-epoxidase and zeaxanthin epoxidase catalyze the inter-conversion between violaxanthin and zeaxanthin in both plants and green algae. The zeaxanthin epoxidase gene from the green microalga <em>Chlorella zofingiensisem> (<em>Czzep> has been isolated<em>. em>This gene encodes a polypeptide of 596 amino acids. A single copy of <em>Czzep> has been found in the <em>C. zofingiensisem> genome by Southern blot analysis. qPCR analysis has shown that transcript levels of <em>Czzep> were increased after zeaxanthin formation under high light conditions. The functionality of <em>Czzep> gene by heterologous genetic complementation in the <em>Chlamydomonas> mutant <em>npq2em>, which lacks zeaxanthin epoxidase (ZEP activity and accumulates zeaxanthin in all conditions, was analyzed. The <em>Czzep> gene was adequately inserted in the pSI105 vector and expressed in <em>npq2em>. The positive transformants were able to efficiently convert zeaxanthin into violaxanthin, as well as to restore their maximum quantum efficiency of the PSII (Fv/Fm. These results show that <em>Chlamydomonas> can be an efficient tool for heterologous expression and metabolic engineering for biotechnological applications.

  13. Control strategies for sweet potato virus disease in Africa.

    Science.gov (United States)

    Gibson, Richard W; Aritua, Valentine; Byamukama, Emmanuel; Mpembe, Isaac; Kayongo, James

    2004-03-01

    Sweet potato virus disease (SPVD), caused by dual infection with the whitefly-borne Sweet potato chlorotic stunt virus (SPCSV) and the aphid-borne Sweet potato feathery mottle virus (SPFMV), is the most serious disease of sweet potato in Africa. SPVD has been known there since at least the 1940s, although it took several decades to elucidate its aetiology. It occurs throughout Africa and is particularly prevalent in the Great Lakes region. Production of sweet potato is largely by resource-poor farmers, growing mostly local landraces and for home consumption and so control strategies need to be appropriate to these circumstances. Most high yielding and/or early maturing landraces in Uganda are susceptible to SPVD and most resistant landraces are low-yielding, forcing farmers to compromise between the conflicting requirements of large and/or early yields, and food security. Accordingly, two strategies were tested to avoid the disadvantages associated with such compromises. These were deploying high-yielding SPVD-resistant cultivars and phytosanitation practices to enable susceptible landraces to be grown successfully. In on-farm trials in Masaka and Rakai Districts of Uganda, some SPVD-resistant cultivars bred at Namulonge Agricultural and Animal Research Station (NAARI), in Wakiso District, out-yielded local landraces. Other trials at NAARI and at nearby farms showed that roguing diseased cuttings within 1 month of planting and isolation from diseased crops, even by as little as 15m, can considerably decrease spread of SPVD to susceptible cultivars. This indicates that phytosanitation can protect desirable susceptible cultivars, even if adopted only locally. A dual approach of deploying both resistant varieties and phytosanitation provides farmers with a valuable increase in their choice of control strategies for SPVD.

  14. Outbreaks of human-herpes virus 6 (HHV-6 infection in day-care centers in Belém, Pará, Brazil Surtos epidêmicos associados à infecção pelo herpesvírus tipo 6 (HHV-6 em creches comunitárias de Belém, Pará, Brasil

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    Ronaldo B. FREITAS

    2000-12-01

    Full Text Available A total of 730 children aged less than 7 years, attending 8 day-care centers (DCCs in Belém, Brazil were followed-up from January to December 1997 to investigate the occurrence of human-herpes virus 6 (HHV-6 infection in these institutional settings. Between October and December 1997 there have been outbreaks of a febrile- and -exanthematous disease, affecting at least 15-20% of children in each of the DCCs. Both serum- and- plasma samples were obtained from 401 (55% of the 730 participating children for the detection of HHV-6 antibodies by enzyme-linked immunosorbent assay (ELISA, and viral DNA amplification through the nested-PCR. Recent HHV-6 infection was diagnosed in 63.8% (256/401 of them, as defined by the presence of both IgM and IgG-specific antibodies (IgM+/IgG+; of these, 114 (44.5% were symptomatic and 142 (55.5% had no symptoms (p = 0.03. A subgroup of 123 (30.7% children were found to be IgM-/IgG+, whereas the remaining 22 (5.5% children had neither IgM nor IgG HHV-6- antibodies (IgM-/IgG-. Of the 118 children reacting strongly IgM-positive ( > or = 30 PANBIO units, 26 (22.0% were found to harbour the HHV-6 DNA, as demonstrated by nested-PCR. Taken the ELISA-IgM- and- nested PCR-positive results together, HHV-6 infection was shown to have occurred in 5 of the 8 DCCs under follow-up. Serological evidence of recent infections by Epstein-Barr virus (EBV and parvovirus B19 were identified in 2.0% (8/401 and 1.5% (6/401 of the children, respectively. Our data provide strong evidence that HHV-6 is a common cause of outbreaks of febrile/exanthematous diseases among children attending DCCs in the Belém area.Um total de 730 crianças com menos de 7 anos de idade, matriculadas em oito creches comunitárias (CCS em Belém, Brasil foi acompanhado de janeiro a dezembro de 1997, com objetivo de se investigar a ocorrência de epidemias de infecção pelo HHV-6. Entre os meses de outubro e dezembro de 1997 foram registrados surtos de doen

  15. Dermatoses em renais cronicos em terapia dialitica

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    Luis Alberto Batista Peres

    2014-03-01

    Full Text Available Objetivo: As desordens cutâneas e das mucosas são comuns em pacientes em hemodiálise a longo prazo. A diálise prolonga a expectativa de vida, dando tempo para a manifestação destas anormalidades. Os objetivos deste estudo foram avaliar a prevalência de problemas dermatológicos em pacientes com doença renal crônica (DRC em hemodiálise. Métodos: Cento e quarenta e cinco pacientes com doença renal crônica em hemodiálise foram estudados. Todos os pacientes foram completamente analisados para as alterações cutâneas, de cabelos, mucosas e unhas por um único examinador e foram coletados dados de exames laboratoriais. Os dados foram armazenados em um banco de dados do Microsolft Excel e analisados por estatística descritiva. As variáveis contínuas foram comparadas pelo teste t de Student e as variáveis categóricas utilizando o teste do qui-quadrado ou o teste Exato de Fischer, conforme adequado. Resultados: O estudo incluiu 145 pacientes, com idade média de 53,6 ± 14,7 anos, predominantemente do sexo masculino (64,1% e caucasianos (90,0%. O tempo médio de diálise foi de 43,3 ± 42,3 meses. As principais doenças subjacentes foram: hipertensão arterial em 33,8%, diabetes mellitus em 29,6% e glomerulonefrite crônica em 13,1%. As principais manifestações dermatológicas observadas foram: xerose em 109 (75,2%, equimose em 87 (60,0%, prurido em 78 (53,8% e lentigo em 33 (22,8% pacientes. Conclusão: O nosso estudo mostrou a presença de mais do que uma dermatose por paciente. As alterações cutâneas são frequentes em pacientes em diálise. Mais estudos são necessários para melhor caracterização e manejo destas dermatoses.

  16. Imunoblot como teste suplementar para detecção de anticorpos contra o vírus da hepatite C em doadores de sangue Immunoblot as a supplemental test to detect antibodies to hepatitis C virus in blood donors

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    Francisco José Dutra Souto

    2002-02-01

    Full Text Available Testes suplementares para melhorar a especificidade do anti-VHC por ELISA nos bancos de sangue não são oficialmente recomendados no Brasil. No intuito de avaliar a taxa de falso-positivos, 70 doadores com transaminases normais e anti-VHC por ELISA foram submetidos a imunoblot de 3ª geração no Hemocentro de Mato Grosso, que não dispõe da técnica da reação de cadeia de polimerase. O teste confirmou o anti-VHC em 44 (62,9%, sendo negativo em 22 (31,4% e indeterminado em 4 (5,7%. Confirmação pelo imunoblot ajuda a identificar os testes ELISA que são falso-positivos, tranqüilizando o grande contingente de doadores nessa situação e separando os que necessitam de acompanhamento médico. Com esse objetivo, sugere-se que o imunoblot poderia ser útil nos bancos de sangue brasileiros que não contam com técnicas de Biologia Molecular.Supplemental tests using Immunoblot are recommended to improve specificity of anti-HCV by ELISA. In Brazil immunoblot is not officially recommended. Aiming to identify EIA false-positive rate 70 positive EIA anti-HCV blood donors were submitted to 3rd generation immunoblot at Hemocentro of Mato Grosso State where polymerase chain reaction tests are not performed. There were 44 (62.9% immunoblot-positive, 22 (31.4% negative and 4 (5.7% indeterminate. Anti-HCV immunoblot can distinguish blood donors with false-positive ELISA from those who need medical assessment. Our data suggest that immunoblot could be useful in Brazilian blood banks where molecular biology tests are not available.

  17. Depressão, estresse e alexitimia em pacientes com infecção pelo vírus HIV = Depression, stress and alexitimy in patients with infection by the HIV virus

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    Verônica da Silveira Leite

    2007-01-01

    Full Text Available Durante o curso da infecção pelo HIV, é comum a depressão; um alto nível de estresse pode derivar em uma menor competência imunitária. Alexitimia é uma reação "estado" para os efeitos de doenças físicas sérias. Este trabalho teve como objetivo avaliar níveis de depressão, estresse e alexitimia em pacientes portadores de HIV correlacionandoosao nível de células TCD4+ e ocorrência de infecções oportunistas. Foram selecionados 50 pacientes portadores de HIV. Escalas para avaliação dos níveis de depressão, estresse e alexitimia foram aplicadas. Houve depressão leve em 48% dos pacientes, moderada (28% egrave (4%. São alexitimicos 82%. Apresentaram sintomas físicos e psicológicos do estresse 78%. Pacientes com taxa de linfócitos TCD4During the course of the infection by HIV, depression is common. A high stress level can result in a smaller imunitary competence. Alexitimy is a reaction "state" for the effects of serious physical diseases. This work aimed to evaluate the depression levels, stress and alexitemy in patients infected with HIV. Fifty patients were selected. Depression, stress and alexitemy were evaluated. The application of scales showed low depression in 48% of patients, moderate in 28% and serious in 4%. 82% are alexitemics and 78%presented physical and psychological symptoms of stress. Patients with TCD4 linfocites tax <200/mm3 presented a higher percentual of depression, stress and alexitemy. It was observed a higher incidence of opportunist infections in the patients with depression, whatever the linfocites T CD4+ tax was. These results suggest relation among depression, stress, alexitemy and higher infection by HIV.

  18. Biological and molecular detection of Hibiscus chlorotic ringspot virus infecting Hibiscus rosa-sinensis in Iran

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    Reza POURRAHIM

    2014-01-01

    Full Text Available During 2011, ten leaf samples of Hibiscus rosa-sinensis with virus-like symptoms including diffuse mottling, numerous chlorotic spots and chlorotic ring spots, were collected from Guilan province, North Iran. The results of mechanical inoculation of sap from these leaves onto different indicator hosts showed local lesions (chlorotic or necrotic on Gompherena globosa, Chenopodium amaranticolor, C. quinoa and Gossypium hirsutum, while Hibiscus cannabinus (kenaf showed systemic chlorotic ring spot symptoms. Purified preparations of the isolated virus contained isometric particles approximately 28–30 nm in diameter. A specific band of about 1.3 kb was amplified from all symptomatic leaves using Hibiscus chlorotic ringspot virus (HCRSV specific primers. Comparative sequence analysis revealed that the IRN.HCRSV (JX865593 isolate shared the greatest nucleotide sequence identity (96.5% with NC-003608 (Singapore and the least nt sequence identity (91.5% with DQ392986 (Taiwan isolates. The phylogenetic tree showed at least two subgroups for HCRSV isolates in which the Iranian isolate was grouped with Singapore HCSRV (NC-003608. This is the first report of HCRSV in H. rosa-sinensis in Iran.

  19. Specific and efficient cleavage of fusion proteins by recombinant plum pox virus NIa protease.

    Science.gov (United States)

    Zheng, Nuoyan; Pérez, José de Jesús; Zhang, Zhonghui; Domínguez, Elvira; Garcia, Juan Antonio; Xie, Qi

    2008-02-01

    Site-specific proteases are the most popular kind of enzymes for removing the fusion tags from fused target proteins. Nuclear inclusion protein a (NIa) proteases obtained from the family Potyviridae have become promising due to their high activities and stringencies of sequences recognition. NIa proteases from tobacco etch virus (TEV) and tomato vein mottling virus (TVMV) have been shown to process recombinant proteins successfully in vitro. In this report, recombinant PPV (plum pox virus) NIa protease was employed to process fusion proteins with artificial cleavage site in vitro. Characteristics such as catalytic ability and affecting factors (salt, temperature, protease inhibitors, detergents, and denaturing reagents) were investigated. Recombinant PPV NIa protease expressed and purified from Escherichia coli demonstrated efficient and specific processing of recombinant GFP and SARS-CoV nucleocapsid protein, with site F (N V V V H Q black triangle down A) for PPV NIa protease artificially inserted between the fusion tags and the target proteins. Its catalytic capability is similar to those of TVMV and TEV NIa protease. Recombinant PPV NIa protease reached its maximal proteolytic activity at approximately 30 degrees C. Salt concentration and only one of the tested protease inhibitors had minor influences on the proteolytic activity of PPV NIa protease. Recombinant PPV NIa protease was resistant to self-lysis for at least five days.

  20. Powassan (POW) Virus Basics

    Science.gov (United States)

    ... Professionals Related Topics For International Travelers Powassan (POW) Virus Basics Download this fact sheet formatted for print: ... POW) Virus Fact Sheet (PDF) What is Powassan virus? Powassan (POW) virus is a flavivirus that is ...

  1. Shedding new light on viruses: super-resolution microscopy for studying human immunodeficiency virus.

    Science.gov (United States)

    Müller, Barbara; Heilemann, Mike

    2013-10-01

    For more than 70 years electron microscopy (EM) techniques have played an important role in investigating structures of enveloped viruses. By contrast, use of fluorescence microscopy (FM) methods for this purpose was limited by the fact that the size of virus particles is generally around or below the diffraction limit of light microscopy. Various super-resolution (SR) fluorescence imaging techniques developed over the past two decades bypass the diffraction limit of light microscopy, allowing visualization of subviral details and bridging the gap between conventional FM and EM methods. We summarize here findings on human immunodeficiency virus (HIV-1) obtained using SR-FM techniques. Although the number of published studies is currently limited and some of the pioneering analyses also covered methodological or descriptive aspects, recent publications clearly indicate the potential to approach open questions in HIV-1 replication from a new angle.

  2. Interactions of viruses in Cowpea: effects on growth and yield parameters

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    Taiwo MA

    2007-02-01

    Full Text Available Abstract The study was carried out to investigate the effects of inoculating three cowpea cultivars: "OLO II", "OLOYIN" and IT86D-719 with three unrelated viruses: Cowpea aphid-borne mosaic virus (CABMV, genus Potyvirus, Cowpea mottle virus (CMeV, genus Carmovirus and Southern bean mosaic virus (SBMV, genus Sobemovirus singly and in mixture on growth and yield of cultivars at 10 and 30 days after planting (DAP. Generally, the growth and yield of the buffer inoculated control plants were significantly higher than those of the virus inoculated plants. Inoculation of plants at an early age of 10 DAP resulted in more severe effect than inoculations at a later stage of 30 DAP. The average values of plant height and number of leaves produced by plants inoculated 30 DAP were higher than those produced by plants inoculated 10 DAP. Most of the plants inoculated 10 DAP died and did not produce seeds. However, " OLOYIN" cultivar was most tolerant and produced reasonable yields when infected 30 DAP. The effect of single viruses on growth and yield of cultivars showed that CABMV caused more severe effects in IT86D-719, SBMV had the greatest effect on "OLO II" while CMeV induced the greatest effect on "OLOYIN". Yield was greatly reduced in double infections involving CABMV in combination with either CMeV or SBMV in "OLOYIN" and "OLO II", however, there was complete loss in yield of IT86D-719. Triple infection led to complete yield loss in all the three cultivars.

  3. Bioassay-Guided Isolation and Identification of Cytotoxic Compounds from <em>Gymnosperma> <em>glutinosum> Leaves

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    Cristina Rodríguez-Padilla

    2012-09-01

    Full Text Available Bioassay-guided fractionation of hexane extracts of<em> Gymnosperma glutinosumem> (Asteraceae leaves, collected in North Mexico, afforded the known compounds hentriacontane (1 and (+-13<em>S>,14<em>R>,15-trihydroxy-<em>ent>-labd-7-ene (2, as well as the new <em>ent>-labdane diterpene (−-13<em>S>,14<em>R>,15-trihydroxy-7-oxo-<em>ent>-labd-8(9-ene (3. In addition, D-glycero-D-galactoheptitol (4 was isolated from the methanolic extract of this plant. Their structures were established on the basis of high-field 1D- and 2D NMR methods supported by HR-MS data. The cytotoxic activity was determined by using the <em>in vitroem> L5178Y-R lymphoma murine model. Hentriacontane (1 and the new <em>ent>-labdane 3 showed weak cytotoxicity, whereas the <em>ent>-labdane 2 showed significant (<em>p> < 0.05 and concentration dependent cytotoxicity (up to 78% against L5178Y-R cells at concentrations ranging from 7.8 to 250 µg/mL.

  4. em arquitetura e urbanismo

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    Ana Maria Sala Minucci Martins

    2006-01-01

    Full Text Available Está sendo desenvolvido projeto de pesquisa denominado Geometria Fractal e suas Aplicações em Arquitetura e Urbanismo, com o fito de estudar e desenvolver ferramentas analíticas e propositivas para serem aplicadas em arquitetura e urbanismo, com base em conceitos provenientes da geometria fractal.

  5. Computer Viruses. Technology Update.

    Science.gov (United States)

    Ponder, Tim, Comp.; Ropog, Marty, Comp.; Keating, Joseph, Comp.

    This document provides general information on computer viruses, how to help protect a computer network from them, measures to take if a computer becomes infected. Highlights include the origins of computer viruses; virus contraction; a description of some common virus types (File Virus, Boot Sector/Partition Table Viruses, Trojan Horses, and…

  6. Antimicrobial Activity of Geranium Oil against Clinical Strains<em> em>of <em>Staphylococcus aureusem>

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    Monika Sienkiewicz

    2012-08-01

    Full Text Available The aim of this work was to investigate the antibacterial properties of geranium oil obtained from <em>Pelargonium graveolensem> Ait. (family <em>Geraniaceae>, against one standard <em>S. aureus em>strain ATCC 433000 and seventy clinical <em>S. aureusem> strains. The agar dilution method was used for assessment of bacterial growth inhibition at various concentrations of geranium oil. Susceptibility testing of the clinical strains to antibiotics was carried out using the disk-diffusion and E-test methods. The results of our experiment showed that the oil from <em>P. graveolensem> has strong activity against all of the clinical <em>S. aureusem> isolates—including multidrug resistant strains, MRSA strains and MLSB-positive strains—exhibiting MIC values of 0.25–2.50 μL/mL.

  7. Prevalence of Lettuce mosaic virus - common strain on three lettuce producing areas from São Paulo State Prevalência da estirpe comum de Lettuce mosaic virus em três regiões produtoras de alface do estado de São Paulo

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    Ana Carolina Firmino

    2008-06-01

    Full Text Available LMV is one of the most important pathogens of lettuce worldwide. Based on their ability to overcome the resistance genes mo1¹ and mo1² in lettuce, isolates can be divided in two types: LMV-Most, which can infect and are seed-borne in cultivars containing the mo1 gene and LMV-Common, which do not cause symptoms on these cultivars and are seed transmitted only in susceptible cultivars. To evaluate the occurrence of these two types of LMV isolates, a survey was carried out during 2002-2005 in three lettuce production areas from São Paulo State. Total RNA was used for the diagnosis of LMV isolates by RT-PCR using universal primers for the variable N-terminus of the capsid protein, in the 3' end of the genome. Positives samples were analyzed by a second RT-PCR using specifics primers for LMV-Most isolates designed to amplify a fragment from the central region (CI-VPg of the genome. A total of 1362 samples showing mosaic symptoms were collected and 504 (37.29 % were positives for LMV. On susceptible lettuce cultivars, LMV-Common was prevalent (77.3%. LMV-Most was found frequently associated with tolerant (mo1¹ lettuce cultivars. Susceptible cultivars correspond today for most of the area of lettuce production. So, despite the ability of LMV-Most isolates to overcome the resistance provided by the recessive mo1¹ gene, they are not prevalent in the conditions of São Paulo State.O LMV ocorre em todo o mundo e é considerado um dos patógenos mais importantes para a cultura da alface. De acordo com a habilidade em contornar os genes de resistência mo1¹ e mo1² encontrados em alface, os isolados de LMV podem ser dividos em dois sub-grupos: LMV-Most, capazes de contornar a resistência propiciada por estes genes e de serem transmitidos pela semente nestas cutivares, e LMV-Common, que não são capazes de causar sintomas nestes cultivares, além de serem transmitidos pela semente somente em cultivares suscetíveis. Para avaliar a ocorrência destes

  8. Evolução de parâmetros antropométricos em portadores do vírus da Imunodeficiência Humana ou com Síndrome da Imunodeficiência Adquirida: um estudo prospectivo Changes in the anthropometric parameters of patients with the Human Immunodeficiency virus or Acquired Immunodeficiency Syndrome: a prospective study

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    Maíra Ladeia Rodrigues Curti

    2010-02-01

    Full Text Available OBJETIVO: Avaliar o estado nutricional e a evolução de parâmetros antropométricos para alterações morfológicas em pacientes vivendo com o vírus da Imunodeficiência Humana ou com Síndrome da Imunodeficiência Adquirida em uso de terapia antirretroviral de alta atividade. MÉTODOS: Trata-se de estudo de coorte prospectiva com duração de 12 meses, envolvendo indivíduos adultos, de ambos os sexos, em terapia antirretroviral recém introduzida. Os indicadores antropométricos estudados foram índice de massa corporal, circunferência de cintura, dobras cutâneas subescapular, biciptal e triciptal, avaliados com intervalos de três meses, totalizando 4 medidas do tempo. Variáveis foram descritas segundo mediana e percentis 25 e 75 e analisadas por ANOVA para medidas repetidas. RESULTADOS: A população estudada foi composta por 53 indivíduos, a maioria do sexo masculino (81%, entre 30 e 39 anos. Apenas a dobra cutânea subescapular apresentou significante variação no tempo (T1=13,7 vs T4=16,0; pOBJECTIVE: The objective of this study was to assess the nutritional status and changes in the anthropometric indicators of patients with the human Immunodeficiency virus or acquired immunodeficiency syndrome using the highly active antiretroviral therapy. METHODS: This is a 12-month prospective cohort study of adult males and females who recently started antiretroviral therapy. The anthropometric indicators studied were body mass index, waist circumference and subscapular, biceps and triceps skinfold thicknesses, taken 4 times during the year in 3-month intervals. The variables were described according to medians and 25 and 75 percentiles and analyzed by ANOVA for repeated measurements. RESULTS: The studied population consisted of 53 patients, mostly males (81% aged 30 to 39 years. Only subscapular skinfold thickness changed significantly over time (T1=13.70 vs T4=16.00, p<0.001, indicating cervical lipohypertrophy (buffalo hump. CONCLUSION

  9. Human exposure to potential rabies virus transmitters in Olinda, State of Pernambuco, between 2002 and 2006 Exposição humana a potenciais transmissores do vírus rábico em Olinda, Estado de Pernambuco, entre 2002 e 2006

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    Filipe Dantas-Torres

    2007-12-01

    Full Text Available The aim of the present study was to evaluate the data on human exposure to potential rabies virus transmitters in Olinda, State of Pernambuco, Brazil. Data from 7,062 patients who underwent antirabies prophylactic treatment in Olinda between 2002 and 2006 were analyzed. As expected, dogs and cats were involved in most of the cases; i.e. 82.3 and 16.3%, respectively. Attacks by nonhuman primates, bats and other species (unspecified were also reported. Among the 7,062 patients who underwent antirabies treatment, 582 patients abandoned the treatment, either by indication from the health unit (195 or by their own decision (387. In conclusion, this study has indicated that prophylaxis for human rabies in this urban area will require a multifaceted approach, including health education, post-exposure prophylaxis, systematic vaccination for dogs and cats, and possibly selective control over wild animals such as hematophagous bats.O objetivo deste estudo foi avaliar os dados sobre a exposição humana a potenciais transmissores do vírus rábico em Olinda, Pernambuco, Brasil. Foram analisados dados de 7.062 pacientes submetidos ao tratamento anti-rábico em Olinda entre 2002 e 2006. Como esperado, cães e gatos estiveram envolvidos na maioria dos casos; isto é, 82,3 e 16,3%, respectivamente. Ataques por primatas não-humanos, morcegos e outras espécies (não especificadas também foram relatadas. Dos 7.062 pacientes submetidos ao tratamento anti-rábico, 582 abandonaram o tratamento, seja por indicação da unidade de saúde (195 ou por decisão própria (387. Concluindo, esse estudo indica que a profilaxia da raiva humana nessa área urbana irá requer uma abordagem multifacetada, incluindo educação em saúde, profilaxia pós-exposição, vacinação sistemática de cães e gatos e, eventualmente, o controle seletivo de animais silvestres, tais como morcegos hematófagos.

  10. Characteristics of Watermelon Mosaic Virus Transmission Occurring in Korean Ginseng

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    Seung-Kook Choi

    2014-09-01

    Full Text Available Korean ginseng (Panax ginseng is the most popular herb for medical purpose in Korea. Recently, viral diseases from Korean ginseng showing various degrees of severe mottling, variegation and mosaic symptoms have caused quantity losses of Korean ginseng in a large number of farms. Watermelon mosaic virus (named WMVgin was identified as a causal agent for the disease of Korean ginseng. Interestingly, WMV-gin failed to infect both Korean ginseng plant and susceptible host species including cucurbitaceous plants by mechanical inoculation. However, WMV-gin could successfully infect Korean ginseng by transmission of two aphid species (Myzus persicae and Aphis gossypii. It is likely that transmission of WMV-gin was done by both the aphid species during feeding behavior of the two aphid species on Korean ginseng, though the aphids dislike feeding in Korea ginseng. Similarly, a strain of WMV (WMV-wm isolated from watermelon was transmitted successfully to Korean ginseng plant by the two aphid species, but not by mechanical inoculations. Transmission assays using M. persicae and A. gossypii clearly showed both WMV-gin and WMV-wm were not transmitted from infected Korean ginseng plant to cucurbit species that are good host species for WMV. These results suggest WMV disease occurring in Korean ginseng plant can be controlled by ecological approaches.

  11. Detecção do gene da nucleoproteína do vírus da cinomose canina por RT-PCR em urina de cães com sinais clínicos de cinomose Detection of canine distemper virus nucleoprotein gene by RT-PCR in urine of dogs with distemper clinical signs

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    C.M.S. Gebara

    2004-08-01

    Full Text Available A presença do vírus da cinomose canina (CDV foi avaliada pela reação em cadeia da polimerase, precedida de transcrição reversa (RT-PCR, em 87 amostras de urina de cães que apresentavam sinais clínicos sugestivos de cinomose. Os animais foram distribuídos em três grupos. No grupo A foram incluídos 41 cães com alterações sistêmicas; no grupo B, 37 cães com alterações neurológicas; e no grupo C, nove cães com alterações sistêmicas e neurológicas simultâneas. O grupo D (controle foi composto por 20 cães assintomáticos. Os resultados da RT-PCR foram correlacionados com a forma clínica da infecção e com as alterações hematológicas encontradas. Foi possível a amplificação parcial do gene da nucleoproteína do CDV em 41 (47,1% das 87 amostras de urina provenientes de cães com sinais clínicos sugestivos de cinomose. Todas as amostras obtidas de animais assintomáticos foram negativas na RT-PCR. Amostras positivas foram encontradas nos três grupos de animais com sinais clínicos na proporção de 51,2% (24/41, 29% (11/37 e 100% (9/9 para os grupos A, B e C, respectivamente. A leucocitose foi a alteração hematológica mais freqüente nos três grupos de cães com sinais clínicos porém, não foi possível estabelecer correlação entre o resultado da RT-PCR e as alterações hematológicas. Os resultados demonstraram que, independente da forma de apresentação clínica, a técnica da RT-PCR realizada em urina pode ser utilizada no diagnóstico ante mortem da infecção pelo CDV.The urine of 87 dogs with clinical signs suggestive of canine distemper was analyzed by RT-PCR for detection of canine distemper virus (CDV nucleoprotein gene. The samples were allotted to the following groups: group A- with 41 dogs with systemic symptoms, group B- with 37 dogs with neurological signs, and group C- with 9 dogs with simultaneous systemic and neurological clinical signs. Group D (control included 20 assymptomatic dogs. A chi2

  12. Prevalência de anticorpos contra o vírus da mamilite herpética em bovinos do Rio Grande do Sul, Brasil Prevalence of antibodies to bovine herpes mammillitis virus in cattle of Rio Grande do Sul , Brazil

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    Fabrício Dias Torres

    2009-09-01

    Full Text Available O herpesvírus bovino tipo 2 (BoHV-2, agente da mamilite herpética bovina (BHM, possui distribuição mundial e foi identificado no Brasil, na década de 70. A partir de então, casos de mamilite clinicamente compatíveis com a BHM têm sido relatados por técnicos e produtores, o que sugere a presença e disseminação do agente no rebanho bovino brasileiro. Este trabalho relata um inquérito sorológico da infecção pelo BoHV-2 no Estado do Rio Grande do Sul (RS, em amostras coletadas como parte do Programa Nacional de Controle e Erradicação da Brucelose e Tuberculose (PNCBT. Um total de 2.213 amostras de soro coletadas de fêmeas bovinas com idade igual ou superior a 24 meses, predominantemente de rebanhos leiteiros, de 136 municípios pertencentes a sete macrorregiões do RS, foram testadas para anticorpos anti-BoHV-2 pela técnica de soro-neutralização (SN. Anticorpos anti-BoHV-2 (títulos > 2 foram detectados em 24,5% (543/2.213 das amostras. Os índices de positividade variaram entre 12,9% (22/170, na região metropolitana de Porto Alegre, e 48,9% (69/137, na região centro oriental do RS. Em geral, os rebanhos leiteiros apresentaram prevalência maior (32,3%, seguidos dos rebanhos mistos (22% e de corte (17,6%. Esses resultados demonstram uma ampla disseminação da infecção pelo BoHV-2 no rebanho bovino do Estado e sugerem a participação do agente em parte dos casos de mamilite descritos em gado leiteiro.Bovine herpesvirus type 2 (BoHV-2, the agent of bovine herpetic mammillitis (BHM, has a worldwide distribution and was identified in Brazil in the 70's. Thereafter, cases of bovine mammillitis clinically compatible with BHM have been frequently reported by cattle owners and veterinarians, mainly in dairy herds, suggesting the dissemination of BoHV-2 among Brazilian cattle. This article reports a serologic survey for BoHV-2 antibodies in cattle from Rio Grande do Sul (RS, using serum samples obtained upon a statistically

  13. Etiological agents of diarrhea in patients infected by the human immunodeficiency virus-1: a review Agentes etiológicos da diarréia em pacientes infectados pelo vírus da imunodeficiência tipo-1: revisão

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    Andréa Regina Baptista Rossit

    2009-04-01

    Full Text Available Despite the importance of understanding the epidemiology of agents responsible for infectious diarrhea in human immunodeficiency virus (HIV/acquired immunodeficiency syndrome (AIDS population, the number of articles about this subject is relatively few. The current article summarizes published data on bacterial, fungal, viral and parasitic enteropathogens in the HIV/AIDS seropositive subjects in different countries, regions and localities. In general, there is a great difference in the frequencies of etiological agents due to factors which include immune status, geographical location, climate and socioeconomic conditions. It is important to stress that a great prevalence of infection by emergent agents has been reported in the more advanced stages of AIDS. Therefore, to establish specific treatment depends directly on knowledge of these agents and risk factors associated to their distribution. Moreover, the colonization by potential pathogenic agents verified in these individuals is high thus implicating that they act as carriers. Finally, public health measures of control and prevention must take into consideration the regional previously identified enteropathogens, especially in areas where HIV prevalence is high.Muito embora a importância do conhecimento sobre a epidemiologia dos agentes responsáveis pela diarréia infecciosa nos portadores do vírus da imunodeficiência humana (HIV e/ou doentes pela síndrome da imunodeficiência adquirida (SIDA, o número de artigos científicos sobre o tema é relativamente pequeno. Este artigo resume os dados já publicados sobre os enteropatógenos bacterianos, fúngicos, virais e parasitários que acometem os indivíduos soropositivos para o HIV e/ou doentes pela SIDA em diferentes países, regiões e localidades. Em geral, existe uma grande diferença nas freqüências dos agentes etiológicos, devido a fatores que incluem status imunológico, localização geográfica, clima e condições socioecon

  14. Evaluation of the human immunodeficiency virus type 1 and 2 antibodies detection in dried whole blood spots (dbs samples Pesquisa de anticorpos contra o vírus da imunodeficiência humana tipos 1 e 2 em amostras de sangue seco coletadas em papel filtro

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    Andréa Cauduro de Castro

    2008-06-01

    Full Text Available Human Immunodeficiency Vírus Type 1 and 2 antibodies detection was performed in 457 dried whole blood spots samples (S&S 903. Q-Preven HIV 1+2 was the screening test used. The results were compared with the gold standard serum tests by ELISA (Cobas Core e Axsym HIV1/2 gO and imunofluorescence was the definitive confirmatory test. The samples were obtained from the Hospital Nossa Senhora da Conceição in Porto Alegre, RS - Brazil, through whole blood transfer to filter paper card and sent to Caxias do Sul, RS - Brazil where the tests were performed. The dried whole blood spot stability was evaluated with two different panels. The first one was composed of five negative and five positive samples stored at room temperature, 4 ºC, -20 ºC and -70 ºC, while the second was composed of two negative and three positive samples stored at 37 ºC (humidity Foram realizados 457 testes para detectar anticorpos contra o Vírus da Imunodeficiência Humana tipos 1 e 2, em amostras de sangue total seco coletadas em papel filtro (S&S 903, com o teste de triagem Q-Preven HIV 1+2, comparando-se com os resultados dos testes de triagem no soro (Cobas Core e Axsym HIV1/2 gO, sendo a imunofluorescência indireta o teste confirmatório. As amostras foram obtidas no Hospital Conceição em Porto Alegre, pela transferência de sangue total para cartão de papel filtro e encaminhadas para Caxias do Sul para a realização dos testes. Foi analisada a estabilidade da amostra em papel filtro com a utilização de dois painéis: o primeiro com cinco amostras negativas e cinco positivas armazenadas por seis semanas à temperatura ambiente, 4 ºC, -20 ºC e -70 ºC; o segundo com duas negativas e três positivas armazenadas por seis semanas com avaliações semanais a 37 ºC (umidade <50%. Os resultados de todas as amostras testadas foram mantidos. A sensibilidade foi de 100%, a especificidade de 99,6%, o valor preditivo positivo de 99,5% e o valor preditivo negativo de 100

  15. The spectrum of viruses isolated from Pulsatilla pratensis (Ranunculaceae a native plant of Ukraine

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    О. А. Shydlovska

    2016-03-01

    Full Text Available The article is devoted to virus screening of wild plants of Ukraine’s flora. The object of the research is the Red Book plant Pulsatilla pratensis (L. Mill., which grows on the territory of Kanev Nature Reserve. Isolated isometric infectious virus-like particles with diameters of 34, 36, 43, 47, 50 and 57 nm were isolated from selected plants of P. pratensis. In our research, determination of the infectious nature of the pathogen, host range, concentration of viruses in plants, species identity and virus isolation from the mixture in mixed viral infections were carried with using indicator plants. The typical viral symptoms were observed on indicator plants: browning of the leaf plate, mottling, chlorosis and necrosis. All symptoms were systemic and could be caused by a variety of viruse species. Virions with sizes from 34 to 43 nm produced the necrotic and chlorotic spotting on Chenopodium amaranticolor Coste and Reyn. On the other hand, virions with sizes from 47 to 57 nm produced the necrosis, chlorosis and deformation of the leaf plates on Cucumis sativus L. That is not typical for viruses previously discovered on P. pratensis. The viruses isolated in these plants viruses were cumulated in small concentrations and rapidly lost their infectivity. The number of isolated viruses was insufficient for their identification. Four bacteriophage isolates with long phage tails of different size were isolated from P. pratensis roots and radical soil. The biological (lytic activity towards the tracer bacteria, the morphology of negative colonies, and bacteriophage protein structure were characterized. According to our research, it is possible to divide phages into three subgroups that probably correspond to three different types of viruses. Results of the polypeptide analysis may reflect an evolutionary process in a population of phages that had a common ancestor. Comparison of phage proteins of different hosts shows a variety of molecular weights of

  16. Diminuição do risco de infecção pelo vírus da imunodeficiência humana (VIH em pacientes em hemodiálise no estado do Rio de Janeiro, Brasil Decreased risk for the acquisition of human immunodeficiency virus (HIV infection in hemo-dialysis patients in Rio de Janeiro State, Brazil

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    José Hermógenes Rocco Suassuna

    1990-12-01

    Full Text Available Os estudos iniciais sobre a soroprevalência de anticorpos anti-VIH-1 (Ac-VIH em unidades de hemodiálise no Estado do Rio de Janeiro (RJ foram feitos em 1985. Os números alarmantes, próximos a