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Sample records for mollis leguminosae novos

  1. Fruit consumption and seed dispersal of Dimorphandra mollis Benth. (Leguminosae) by the lowland tapir in the cerrado of Central Brazil.

    Bizerril, M X A; Rodrigues, F H G; Hass, A

    2005-08-01

    Fruit phenology observations and consumption of Dimorphandra mollis (Leguminosae) were analyzed during seven months in an area of cerrado stricto sensu. We analysed 81 fecal samples collected at six different places of lowland tapirs (Tapirus terrestris) in central Brazilian cerrado. In addition, from the feces of five tapirs at the Brasília Zoo to which fruit had been offered, seeds were collected and used in germination tests. The results suggest that the tapir is an important fruit consumer and a potential seed disperser of D. mollis. In the field, however, fruit consumption was found to be very low, probably because of both fruit palatability and the low density of frugivores, especially tapirs. The possibility that the original dispersal agents of D. mollis seeds belonged to the South American Pleistocene megafauna is discussed.

  2. Fruit consumption and seed ispersal of Dimorphandra mollis Benth. (Leguminosae by the lowland tapir in the Cerrado of Central Brazil

    M. X. A. Bizerril

    Full Text Available Fruit phenology observations and consumption of Dimorphandra mollis (Leguminosae were analyzed during seven months in an area of cerrado stricto sensu. We analysed 81 fecal samples collected at six different places of lowland tapirs (Tapirus terrestris in central Brazilian cerrado. In addition, from the feces of five tapirs at the Brasília Zoo to which fruit had been offered, seeds were collected and used in germination tests. The results suggest that the tapir is an important fruit consumer and a potential seed disperser of D. mollis. In the field, however, fruit consumption was found to be very low, probably because of both fruit palatability and the low density of frugivores, especially tapirs. The possibility that the original dispersal agents of D. mollis seeds belonged to the South American Pleistocene megafauna is discussed.

  3. Katak (Molly).

    Pope, Mary L.; And Others

    This story about a girl named Molly is a preprimer designed for children in bilingual Inupiat-English programs in the Alaskan villages of Ambler, Kobuk, Kiana, Noorvik, Selawik, and Shungnak. It follows the first preprimer, "Denny." Each page of text is illustrated with a black-and-white drawing. The English equivalent is given at the…

  4. MDMA (Ecstasy/Molly)

    ... Molly often actually get other drugs such as synthetic cathinones ("bath salts") instead (see " Added Risk of MDMA "). Some people take MDMA in combination with other drugs such as alcohol or marijuana. How does MDMA affect the brain? MDMA increases ...

  5. There's something about Molly: The underresearched yet popular powder form of ecstasy in the United States.

    Palamar, Joseph J

    2017-01-01

    Molly has been the street name for powder or crystalline ecstasy (3,4-methylenedioxymethamphetamine [MDMA]) in the United States since the early 2000s; however, few studies have examined Molly use or included Molly in the definition of ecstasy/MDMA. Prevalence of self-reported ecstasy use is being underreported on surveys due to the lack of inclusion of "Molly," although Molly is often so adulterated with novel psychoactive substances such as synthetic cathinones ("bath salts") that the name "Molly" may no longer adequately represent ecstasy/MDMA. The author recommends that Molly use and Molly purity be further studied to more adequately inform prevention and harm reduction.

  6. Emergência e desenvolvimento inicial de sementes de Dimorphandra mollis Benth. em campo

    M.F. SOUZA

    2016-03-01

    Full Text Available RESUMO Dimorphandra mollis Benth. (Leguminosae-Caesalpinioideae é uma espécie arbórea, encontrada no bioma Cerrado, utilizada na recuperação de áreas degradadas e na ornamentação. Dos frutos, extrai-se a rutina, um bioflavonoide utilizado na indústria farmacêutica, o qual atua na permeabilidade e na resistência dos vasos capilares. Esta pesquisa teve como objetivo verificar os efeitos do tipo de solo e de adubos sobre a emergência e o vigor da fava-d’anta semeada diretamente no campo. O delineamento experimental adotado foi em blocos ao acaso, em esquema fatorial 4 x 2 (quatro tipos de adubação e dois tipos de solo, com sete repetições de cinco sementes cada. Foram avaliadas as seguintes características: emergência, primeira contagem da emergência, índice de velocidade de emergência, altura e diâmetro da plântula. Não houve interação significativa entre os fatores, tipo de solo e adubos. Os melhores resultados para emergência e IVE são obtidos quando a semeadura é realizada em solo local.

  7. Microsatellites for the gynogenetic Amazon molly, Poecilia formosa

    Home; Journals; Journal of Genetics; Volume 85; Issue 1. Microsatellites for the gynogenetic Amazon molly, Poecilia formosa: useful tools for detection of mutation rate, ploidy determination and overall genetic diversity. Kathrin P. Lampert Dunja K. Lamatsch Susanne Schories Armin Hopf Francisco J. García De León ...

  8. Biostimulant on faveiro (Dimorphandra mollis Benth. seeds and seedling vigor

    Tathiana Elisa Masetto

    2012-06-01

    Full Text Available This work aimed to verify the effects of biostimulant doses, applied through seeds, on faveiro (Dimorphandra mollis Benth. seeds and seedlings vigor. Seeds were previously sulfuric acid scarified in two consecutive years experiments. On 2006 August (first experiment seeds were submitted on Stimulate®: 0; 3.5; 7.0; 10.5 and 14 mL.0.5 Kg-1 doses (first experiment; and seeds picked in August, 2007, were Stimulate:0; 15; 20 and 25 mL.0.5Kg-1 of seeds treated (second experiment. After the biostimulant treatment seeds were sowed in cells trays containing 1:1 (v:v distroferric red latosol + plantmax®. The effect of different Stimulate® doses on Dimorphandra mollis seeds collected in different years were evaluated on the emergency percentage, speed emergency index, root length, aerial part height and dry seedling weight. It was conducted on entirely casualized with four repetitions of 25 seeds each treatment. The 14 mL (2006 lot and 15 mL (2007 lot 0.5Kg-1 of seeds doses provided larger percentage (50% and 66%, respectively and speed emergency indexes (0.67 and 0.9 respectively. The 20 mL.0.5Kg-1 of seeds dose treatment favored the aerial part length, but it didn't influenced the other Dimorphandra mollis seedlings vigor indexes.

  9. Effect of Heating on the Viscosity and Rheology of Grewia mollis ...

    This study determined the effect of concentration and prolonged heating on the rheological properties of gums from Grewia mollis, Bombax ceiba and their binary mixtures. After extraction, the gums were divided into four batches each. The binary mixture was obtained by triturating Grewia mollis and Bombax ceiba gum in a ...

  10. Effects of Alchemilla mollis and Alchemilla persica on the wound healing process

    Burçin Ergene Öz

    2016-09-01

    Full Text Available Alchemilla mollis, is used in traditional medicine for the treatment of wounds and excessive menstruation. Aqueous methanol extracts of A. mollis and A. persica were evaluated for wound healing acivity by using linear incision and circular excision wound models along with hydroxyproline estimation and histopathological analysis. Anti-inflammatory effect was determined according to Whittle method. The extracts prepared from the aerial parts of A. mollis and A. persica exerted significant wound healing activity with the tensile strength values of 39.3% and 33.3%, respectively, and with the contraction values of 51.4% and 43.5%, respectively. Hydroxyproline estimation and histopathological analysis also confirmed the results. The extracts of A. mollis and A. persica showed significant anti-inflammatory activity with the values of 30.6% and 26.6% respectively. These results showed that A. mollis and A. persica possess significant wound healing and anti-inflammatory activities.

  11. Comparison of updates to the Molly cow model to predict methane production from dairy cows fed pasture.

    Gregorini, P; Beukes, P C; Hanigan, M D; Waghorn, G; Muetzel, S; McNamara, J P

    2013-08-01

    Molly is a deterministic, mechanistic, dynamic model representing the digestion, metabolism, and production of a dairy cow. This study compared the predictions of enteric methane production from the original version of Molly (MollyOrigin) and 2 new versions of Molly. Updated versions included new ruminal fiber digestive parameters and animal hormonal parameters (Molly84) and a revised version of digestive and ruminal parameters (Molly85), using 3 different ruminal volatile fatty acid (VFA) stoichiometry constructs to describe the VFA pattern and methane (CH4) production (g of CH4/d). The VFA stoichiometry constructs were the original forage and mixed-diet VFA constructs and a new VFA stoichiometry based on a more recent and larger set of data that includes lactate and valerate production, amylolytic and cellulolytic bacteria, as well as protozoal pools. The models' outputs were challenged using data from 16 dairy cattle 26 mo old [standard error of the mean (SEM)=1.7], 82 (SEM=8.7) d in milk, producing 17 (SEM=0.2) kg of milk/d, and fed fresh-cut ryegrass [dry matter intake=12.3 (SEM=0.3) kg of DM/d] in respiration chambers. Mean observed CH4 production was 266±5.6 SEM (g/d). Mean predicted values for CH4 production were 287 and 258 g/d for MollyOrigin without and with the new VFA construct. Model Molly84 predicted 295 and 288 g of CH4/d with and without the new VFA settings. Model Molly85 predicted the same CH4 production (276 g/d) with or without the new VFA construct. The incorporation of the new VFA construct did not consistently reduce the low prediction error across the versions of Molly evaluated in the present study. The improvements in the Molly versions from MollyOrigin to Molly84 to Molly85 resulted in a decrease in mean square prediction error from 8.6 to 8.3 to 4.3% using the forage diet setting. The majority of the mean square prediction error was apportioned to random bias (e.g., 43, 65, and 70% in MollyOrigin, Molly84, and Molly85, respectively, on

  12. Effects of mechanical wounding on essential oil composition and emission of volatiles from Minthostachys mollis.

    Banchio, Erika; Zygadlo, Julio; Valladares, Graciela R

    2005-04-01

    Plant tissues may show chemical changes following damage. This possibility was analyzed for Minthostachys mollis, a Lamiaceae native to Central Argentina with medicinal and aromatic uses in the region. Effects of mechanical damage on its two dominant monoterpenes, pulegone and menthone, were analyzed by perforating M. mollis leaves and then assessing essential oil composition at 24, 48, and 120 hr; emission of volatiles was also measured 24 and 48 hr after wounding. Mechanical damage resulted in an increase of pulegone and menthone concentration in M. mollis essential oil during the first 24 hr. These changes did not occur in the adjacent undamaged leaves, suggesting a lack of systemic response. Postwounding changes in the volatiles released from M. mollis damaged leaves were also detected, most noticeably showing an increase in the emission of pulegone. Inducible chemical changes in aromatic plants might be common and widespread, affecting the specific compounds on which commercial exploitation is based.

  13. Amazon Molly, Poecilia formosa, as a model for studies of the effects of ionizing radiation

    Woodhead, A.D.; Setlow, R.B.; Hart, R.W.

    1977-01-01

    It is suggested that the viviparous teleost, Poecilia formosa, (Amazon molly) may have wide potential use for aquatic radiation studies. The Amazon molly is a naturally occurring gynogenetic species, in which the eggs are activated after mating with the males of closely related species, without the subsequent genetic contribution from the male. The offspring of a single original female constitute a clone, having identical genotypes. Clones of the genetically homogeneous Amazon molly may prove to be equally as valuable to aquatic radiobiologists as the inbred rodent lines have been to mammalian studies. In many other respects the Amazon molly is a satisfactory laboratory animal. It is robust, easy to rear, and has large broods of young when fully grown. Maintenance costs are low. Details are given of the conditions under which colonies reproduce

  14. Antibacterial activity of essential oil of Minthostachys mollis Griseb “RUYAQ MUÑA”

    Carhuapoma Y., Mario; López G., Sofía; Roque A., Mirtha; Velapatiño, Billie; Bell C., Carlos; Whu W., Delia

    2014-01-01

    The aim of this study was to determine the antibacterial activity of essential oil Minthostachys mollis “ruyaq muña”, against Helicobacter pylori, Shigella dysenteriae, Salmonella typhi and Pseudomonas aeruginosa. The leaves of M. mollis were collected in the district of Huamanguilla (3000-3200 m.s.n.m), Huanta province, Ayacucho region. The essential oil obtained by distillation with water vapor drag. The antibacterial activity was determined by plate cultive excavation method, resulting in ...

  15. There’s Something About Molly: The Under-Researched yet Popular Powder Form of Ecstasy in the United States

    Palamar, Joseph J.

    2017-01-01

    Molly has been the street name for powder or crystalline ecstasy (3,4-methylenedioxymethamphetamine [MDMA]) in the United States since at least 2008; however, few studies have examined Molly use or included Molly in the definition of ecstasy/MDMA. Prevalence of self-reported ecstasy use is being underreported on surveys due to the lack of inclusion of “Molly”, although Molly is often so adulterated with novel psychoactive substances such as synthetic cathinones (“bath salts”) that the name “Molly” may no longer adequately represent ecstasy/MDMA. The author recommends that Molly use and Molly purity be further studied to more adequately inform prevention and harm reduction. PMID:27925866

  16. [The analyses and identification of Flos rhododendri mollis and Flos chrysanthemi indici via infrared spectroscopy].

    Jin, Zhe-Xiong; Wang, Yue; Zhou, Qun; Chen, Jian-Bo; Ma, Fang; Sun, Su-Qin

    2014-09-01

    In this study, major chemical components of Flos rhododendri mollis and Flos chrysanthemi indici were characterized using Fourier transform infrared spectroscopy (FTIR). For Flos rhododendri mollis, the bands at 1,648 and 1,543 cm(-1) were attributed to amide I and amide II , respectively, indicating that it contained proteins probably resulting in immunization. In case of Flos chrysanthemi indici, stretching vibration of C==O function group was responsible for the bands at 1,734 and 1,515 cm(-1), as a result of essential oils, lipids, etc. Since FTIR spectra of Flos rhododendri mollis and Flos chrysanthemi indici are almost identical and it is difficult to discriminate them, two-step identification was investigated via secondary derivative of the FTIR spectra. The bands at 1,656 and 1,515 cm(-1) corresponds to flavonoides in Flos rhododendri mollis and Flos chrysanthemi indici. In the secondary derivative of the FTIR spectrum of Flos chrysanthemi indici, characteristic bands of inulin were present at 1,163, 1,077, 1,026, 986 and 869 cm(-1), and therefore Flos chrysanthemi indici contained inulin as well. Tri-step identification was carried out for Flos rhododendri mollis and Flos chrysanthemi indici by means of comparing their 2D-IR correlation spectra in different wave number range. In the characteristic range of flavonoides (1,700-1,400 cm(-1)), Flos rhododendri mollis exhibited 3 obvious autopeaks, while 10 autopeaks were visualized in the 2D-IR correlation spectrum of Flos chrysanthemi indici Moreover, in the characteristic range of glucoside (1,250-900 cm(-1)), 10 and 9 autopeaks were present in the 2D-IR correlation spectra of Flos rhododendri mollis and Flos chrysanthemi indici, respectively. Therefore, the tri-step identification of FTIR is a time-saving; accurate, cost-saving and convenient method to effectively distinguish traditional Chinese medicines.

  17. Evaluation of the immunotoxicological effects of Dimorphandra mollis Benth., Fabaceae, in rats

    Cássia A. O. Feres

    Full Text Available Dimorphandra mollis Benth., Fabaceae, also known as "faveira" or "fava-d'anta", is a plant common to the central woodsy meadow region of Brazil. It is well known for its antioxidant, antiplatelet and, principally, vasoprotective properties. Its principal component is rutin. The objective of this study is the evaluation of the safety of the use of the dried D. mollis extract in rodents. The rutin content of the standardized extract was 76.0±3%. With respect to the biochemical and hematological parameters evaluated, no alterations in the groups of rats that received 1000 and 2000 mg/kg doses of D. mollis were observed, but an increase in eosinophiles occurred. Hyperactivity of the white splenic pulp was detected in the group that received the 2000 mg/kg dose of D. mollis. In the evaluation of the lymphproliferative response with 1000 and 2000 mg/kg, no alterations were observed, and a decrease in IgG was only observed in the studies with a 2000 mg/kg dose. The results obtained with rodents suggest that no toxicity exists with the administration of dried D. mollis extract in a 1000 mg/kg dose.

  18. Dalbergia latifolia Roxb. (East Indian Rosewood) of Leguminosae is ...

    Dalbergia latifolia Roxb. (East Indian Rosewood) of Leguminosae is a large deciduous or nearly evergreen tree that grows in mixed deciduous forests with teak. Leaves are compound. The creamy white flowers are borne on branched inflorescences. The indehiscent dry pod bears. 1-4 seeds. Inset - a juvenile plant.

  19. Albizzia lebbeck Benth. (Hindi: Siris) of Leguminosae is a large ...

    Albizzia lebbeck Benth. (Hindi: Siris) of Leguminosae is a large deciduous tree with greyish bark and compound leaves. Flowers are greenish-yellow in head inflorescences. Fruit pods are yellowish-brown, flat and carry 6-10 seeds (Inset shows the entire crown of the tree covered with previous season's dry pods).

  20. Identification of myocardial diffuse fibrosis by 11 heartbeat MOLLI T 1 mapping

    Vassiliou, Vassilios S; Wassilew, Katharina; Cameron, Donnie

    2017-01-01

    OBJECTIVES: Our objectives involved identifying whether repeated averaging in basal and mid left ventricular myocardial levels improves precision and correlation with collagen volume fraction for 11 heartbeat MOLLI T 1 mapping versus assessment at a single ventricular level. MATERIALS AND METHODS...... and ECV. To assess correlation of T 1 mapping with collagen volume fraction, a separate cohort of ten aortic stenosis patients scheduled to undergo surgery underwent one CMR scan with this 11 heartbeat MOLLI scheme, followed by intraoperative tru-cut myocardial biopsy. Six models of myocardial diffuse...... fibrosis assessment were established with incremental inclusion of imaging by averaging of the basal and mid-myocardial left ventricular levels, and each model was assessed for precision and correlation with collagen volume fraction. RESULTS: A model using 11 heart beat MOLLI imaging of two basal and two...

  1. Physicochemical Properties and Fatty Acid Profiles of Elaeagnus mollis Diels Nut Oils.

    Liang, Shaohua; Yang, Ruinan; Dong, Caiwen; Yang, Qingping

    2015-01-01

    The physicochemical properties, fatty acid profiles, content of tocopherol and sterol of the oils extracted from the nuts of Elaeagnus mollis Diels grown in different regions of China were studied in this work. The results indicated that the Elaeagnus mollis Diels nut oils contained about 0.2% sterols and the tocopherol contents were in the range of 119.6-128.6mg/100g. The nut oils were all rich in unsaturated fatty acids, especially oleic acid and linoleic acid. Furthermore, the main triacylglycerols species of the nut oils were all dilinoleoyl-monoolein (LOL), dioleoyl-monolinoleoyl (OLO) and trilinoleate (LLL). This work might be useful for developing applications for Elaeagnus mollis Diels nut oil.

  2. The effects of sodium perchlorate on the liver of Molly Fish ( Poecilia ...

    Adult male molly fishes were reared up to ten days in control water or in water containing sodium perchlorate at concentrations of 1, 5, 25 and 125 ppm. Remarkable steatosis, fibrosis, hyperemia and necrosis were distinguished in parallel with increasing sodium perchlorate concentrations. The striking cellular damages ...

  3. Quantifying the threat of extinction from Muller's ratchet in the diploid Amazon molly (Poecilia formosa

    Loewe Laurence

    2008-03-01

    Full Text Available Abstract Background The Amazon molly (Poecilia formosa is a small unisexual fish that has been suspected of being threatened by extinction from the stochastic accumulation of slightly deleterious mutations that is caused by Muller's ratchet in non-recombining populations. However, no detailed quantification of the extent of this threat is available. Results Here we quantify genomic decay in this fish by using a simple model of Muller's ratchet with the most realistic parameter combinations available employing the evolution@home global computing system. We also describe simple extensions of the standard model of Muller's ratchet that allow us to deal with selfing diploids, triploids and mitotic recombination. We show that Muller's ratchet creates a threat of extinction for the Amazon molly for many biologically realistic parameter combinations. In most cases, extinction is expected to occur within a time frame that is less than previous estimates of the age of the species, leading to a genomic decay paradox. Conclusion How then does the Amazon molly survive? Several biological processes could individually or in combination solve this genomic decay paradox, including paternal leakage of undamaged DNA from sexual sister species, compensatory mutations and many others. More research is needed to quantify the contribution of these potential solutions towards the survival of the Amazon molly and other (ancient asexual species.

  4. Postglacial recolonization and the biogeography of Palmaria mollis (Rhodophyta) along the Northeast Pacific coast

    Lindstrom, S.C; Olsen, J.L.; Stam, W.T.

    1997-01-01

    We used random amplified polymorphic DNA (RAPD) markers to examine the distribution of genotypes of Palmaria mollis (Setchell et Gardner) van der Meer et Bird, a red alga. We sampled populations along the Northeast Pacific coast from northern Washington to southwestern Alaska, an area extensively

  5. Hepatic lesions in mollies (Poecilia latipinna) collected from Bayou Trepagnier, Louisiana

    Thiyagarajah, A.

    1993-01-01

    Mollies, Poecilia latipinna, are small fish species belonging to the Family Poeciliidae. Mollies are surface feeders and are commonly found in Louisiana waters. Bayou Trepagnier is located in the Lake Pontchatrain Basin, in St. Charles Parish of Louisiana, which receives treated wastewater and stormwater from an oil refinery and manufacturing complex. The purpose of this study was to determine the effects of refinery discharges on mollies from Bayou Trepagnier. Fish were caught by beach seine, examined for gross lesions and then fixed in 10% neutral buffered formalin for histopathological analysis. Paraffin-embedded fish were cut at 6 μm and stained with hematoxylin and eosin. Lesions observed in mollies were grouped into (1) neoplasms, (2) preneoplastic lesions, and (3) cytotoxic lesions. Hepatocellular carcinoma was the only neoplasm found in these fish. The preneoplastic lesions include basophilic foci, eosinophilic foci, and clear-cell foci. Cytotoxic lesions observed were fatty change, focal necrosis, hyaline degeneration of hepatocytes, and fatty change in pancreatic acinar cells. These preliminary results suggest the presence of carcinogens in Bayou Trepagnier

  6. A new species of Dalbergia (Leguminosae from Malay Peninsula

    Bambang - Sunarno

    2003-12-01

    Full Text Available SUNARNO, BAMBANG & OHASHI, HIROSHI. 2002. A new species of Dalbergia (Leguminosae from Malay Peninsula. Reinwardtia 12(1: 117–119. ⎯ A new species, Dalbergia johoriensis from the Malay Peninsula is described. It is close to D. rostrata and D. havilandii but readily distinguished by the grooved midrib beneath, flowers with narrower standard and wings and style hairy in the lower part.

  7. 7 CFR 201.56-6 - Legume or pea family, Fabaceae (Leguminosae).

    2010-01-01

    ... 7 Agriculture 3 2010-01-01 2010-01-01 false Legume or pea family, Fabaceae (Leguminosae). 201.56-6 Section 201.56-6 Agriculture Regulations of the Department of Agriculture (Continued) AGRICULTURAL...-6 Legume or pea family, Fabaceae (Leguminosae). Kinds of seed: Alfalfa, alyceclover, asparagusbean...

  8. Effects of Minthostachys mollis essential oil and volatiles on seedlings of lettuce, tomato, cucumbre and Bidens pilosa.

    Alonso Amelot, Miguel; Usubillaga, Alfredo; Avila Nuñez, Jorge Luis; Oliveros Bastidas, Alberto; Avendaño Meza, Marisabel

    2007-01-01

    Effects of Minthostachys mollis essential oil and volatiles on seedlings of lettuce, tomato, cucumbre and Bidens pilosa. (Alonso Amelot, Miguel; Usubillaga, Alfredo; Avila Nuñez, Jorge Luis; Oliveros Bastidas, Alberto y Avendaño Meza, Mairsabel) Abstract The extraction and chemical composition of essential oil of Minthostachys mollis (Kunth) Griseb (Lamiaceae) and its inhibitory effects on germation and shoot/root elongation of lettuce, tomato, cucumber and Bidens pilosa (L...

  9. Phytochemical and antifungal activity of anthraquinones and root and leaf extracts of Coccoloba mollis on phytopathogens

    Iuri Bezerra de Barros

    2011-06-01

    Full Text Available The aim of this work was to study the phytochemical and antifungal activity of anthraquinones and root and leaf extracts of Coccoloba mollis on phytopathogens. The chemical analysis of ethanolic extracts showed a mixture of long-chain hydrocarbons, carboxyl esters and 3-taraxerone in the leaf extract. Two anthraquinones (emodin and physcion were isolated and identified from the root extract. Phytochemical screening using the pharmacognostic methods revealed the presence of flavonoids and tannins in the leaves and roots. Anthraquinones were only found in the root extract, no alkaloids, coumarins, saponins and simple phenolics were present. The antifungal activity of C. mollis extracts and anthraquinones isolated from the root of this plant against Botryospheria ribis, B. rhodina, Lasiodiplodia theobromae and Fusarium sp showed promising results for their use as fungicides, where emodin was the most active compound, which inhibited the microorganisms tested up to 44%.

  10. EFFECT OF LIGHT AND GIBERELLIC ACID (AG3 ON THE GERMINATION OF MINTHOSTACHYS MOLLIS (LABIATAE

    Diego Fernando Suárez Peñaranda

    2011-05-01

    Full Text Available Minthostachys mollis (Kunth Griseb. o muña es un arbusto perenne que crece naturalmente en las región andina de Colombia; esta especie es ampliamente utilizada por las comunidades rurales en donde es valorada por sus propiedades medicinales para tratar diferentes afecciones y como control de larvas de insectos transmisores de enfermedades; sin embargo, las poblaciones naturales de esta planta han sido fuertemente reducidas por acción antrópica, por lo tanto, es necesario generar tecnologías de propagación que permitan la recuperación y conservación de las poblaciones naturales. El objetivo de este estudio fue determinar el efecto de la luz (luz roja, luz blanca, luz natural y del ácido giberélico (0, 5, 15, 25 ppm en el proceso de germinación de M. mollis. Se encontró un efecto negativo de la oscuridad en el proceso de germinación y no se observó efecto del AG3 sobre la germinación de M. mollis en presencia de la luz. Los porcentajes de germinación obtenidos en los tratamientos de iluminación fueron superiores al 80% sobresaliendo el tratamiento de luz roja que arrojó los mejores resultados tanto en el porcentaje como en la velocidad de germinación. Los resultados indican que la germinación en M. mollis es dependiente de la luz debido a que sus semillas son fotoblásticas positivas.

  11. Brain nonapeptide and gonadal steroid responses to deprivation of heterosexual contact in the black molly

    Kulczykowska, Ewa; Kalamarz-Kubiak, Hanna; Nietrzeba, Marta; Gozdowska, Magdalena

    2014-01-01

    ABSTRACT Fish may respond to different social situations with changes in both physiology and behaviour. A unique feature of fish is that social interactions between males and females strongly affect the sexual characteristics of individuals. Here we provide the first insight into the endocrine background of two phenomena that occur in mono-sex groups of the black molly (Poecilia sphenops): masculinization in females and same-sex sexual behaviour, manifested by gonopodial displays towards same...

  12. Antimycobacterial activity of Juglans regia, Juglans mollis, Carya illinoensis and Bocconia frutescens.

    Cruz-Vega, Delia Elva; Verde-Star, María Julia; Salinas-González, Noé; Rosales-Hernández, Bibiana; Estrada-García, Iris; Mendez-Aragón, Patricia; Carranza-Rosales, Pilar; González-Garza, María Teresa; Castro-Garza, Jorge

    2008-04-01

    Mycobacterium tuberculosis is a serious worldwide health threat, killing almost 2 million people per year. Alternative antimycobacterial drugs are urgently needed; studies have shown that medicinal plants traditionally used to treat respiratory diseases are a potential source of compounds to treat tuberculosis. This paper studied the antimycobacterial activity of 28 extracts from four different plant species that have been used in traditional Mexican medicine to treat tuberculosis. Bark and leaf crude extracts of Juglans regia L., Juglans mollis Engelm., Carya illinoensis (Wangenh) K. Koch and Bocconia frutescens showed in vitro anti-M. tuberculosis activity. Hexane bark extracts from C. illinoensis, J. mollis and J. regia were the most active with a minimal inhibitory concentration (MIC) of 31, 50 and 100 microg/mL, respectively. Ethanol bark extracts from C. illinoensis and J. mollis showed activity at 100 and 125 microg/mL, respectively. Leaf extracts had the lowest activity. Methanol and hexane leaves extracts from B. frutescens had a MIC of 125 microg/mL. None of the aqueous extracts showed antimycobacterial activity. (c) 2008 John Wiley & Sons, Ltd.

  13. Flavonoids and other bioactive phenolics isolated from Cenostigma macrophyllum (Leguminosae)

    Alves, Clayton Q.; David, Jorge M.; David, Juceni P.; Villareal, Cristiane F.; Soares, Milena B.P.; Queiroz, Luciano P. de; Aguiar, Rosane M.

    2012-01-01

    This work describes the phytochemical study of stem bark and leaves of Cenostigma macrophyllum Tul. (Leguminosae). Through usual chromatographic techniques were isolated bergenin as the primary compound of the stem bark of and from the leaves gallic acid, methyl gallate, ellagic acid, quercetin, quercetin-3-ο-β-D-glucopyranoside, quercetin-3-O-(6 - ο-galloyl)-β-D-glucopyranoside (tellimoside), quercetin-3-O-(6 - ο-E-p-coumaroyl)-β-D-glucopyranoside (helichrysroside), agathisflavone and vitexin were obtained. The isolates were identified by spectroscopic data analysis, and bergenin showed dose-related antinociception when assessed in acetic acid-induced writhing in mice. (author)

  14. Las leguminosas en alimentación animal

    Rubio, Luis A.

    2016-06-01

    and the fact that most is genetically modified are barriers to its utilization in the EU. In summary, environmental, health and productive considerations result in a growing interest in legume production in the EU.Desde el punto de vista de su uso en nutrición animal, pueden considerarse dos grupos de leguminosas: leguminosas-forraje (p. ej. la alfalfa, usadas en alimentación de rumiantes y leguminosas-grano (p. ej. habas, guisantes y altramuces, usadas esencialmente para aves y cerdos, y en menor medida para rumiantes. Las leguminosas-grano pueden sustituir parcial o totalmente a fuentes de proteínas tradicionales, de origen animal, como carne, huesos o harina de pescado en los piensos para animales, y representan una alternativa para las harinas de soja y otras oleaginosas. Su contenido en proteína es variable pero elevado (25-45 g/100 g materia seca. No obstante, la presencia de metabolitos secundarios (inhibidores de proteasas, saponinas, glucósidos, lectinas, taninos, alcaloides, así como sus altos niveles de fibra (polisacáridos no amiláceos, ha restringido el uso de leguminosas-grano en la alimentación de animales monogástricos (aves y cerdos y, mucho más en la de rumiantes. Sin embargo, en la actualidad se está incrementando el interés por el uso de estas materias primas como alimentos funcionales, sobre todo en nutrición humana, pero también en nutrición animal, entre otras razones, como consecuencia de la prohibición del uso de proteína animal (harinas de carne y hueso, que tuvo lugar en la Unión Europea tras la crisis de la Encefalopatía Espongiforme Bovina. Para establecer el valor nutritivo de las leguminosas ha de prestarse especial atención a su composición en nutrientes, su contenido en energía y la digestibilidad de los aminoácidos. En rumiantes, es necesario establecer la degradabilidad en el rumen tanto de la proteína como de los aminoácidos individuales y de los carbohidratos, aspectos que determinan la utilización de

  15. Cytogenetic and molecular identification of a wheat-Leymus mollis alien multiple substitution line from octoploid Tritileymus x Triticum durum.

    Pang, Y H; Zhao, J X; Du, W L; Li, Y L; Wang, J; Wang, L M; Wu, J; Cheng, X N; Yang, Q H; Chen, X H

    2014-05-23

    Leymus mollis (Trin.) Pilger (NsNsXmXm, 2n = 28), a wild relative of common wheat, possesses many traits that are potentially valuable for wheat improvement. In order to exploit and utilize the useful genes of L. mollis, we developed a multiple alien substitution line, 10DM50, from the progenies of octoploid Tritileymus M842-16 x Triticum durum cv. D4286. Genomic in situ hybridization analysis of mitosis and meiosis (metaphase I), using labeled total DNA of Psathyrostachys huashanica as probe, showed that the substitution line 10DM50 was a cytogenetically stable alien substitution line with 36 chromosomes from wheat and three pairs of Ns genome chromosomes from L. mollis. Simple sequence repeat analysis showed that the chromosomes 3D, 6D, and 7D were absent in 10DM50. Expressed sequence tag-sequence tagged sites analysis showed that new chromatin from 3Ns, 6Ns, and 7Ns of L. mollis were detected in 10DM50. We deduced that the substitution line 10DM50 was a multiple alien substitution line with the 3D, 6D, and 7D chromosomes replaced by 3Ns, 6Ns, and 7Ns from L. mollis. 10DM50 showed high resistance to leaf rust and significantly improved spike length, spikes per plant, and kernels per spike, which are correlated with higher wheat yield. These results suggest that line 10DM50 could be used as intermediate material for transferring desirable traits from L. mollis into common wheat in breeding programs.

  16. EFFECT OF LIGHT AND GIBERELLIC ACID (AG3) ON THE GERMINATION OF MINTHOSTACHYS MOLLIS (LABIATAE)

    Fernández Alonso José Luis; Melgarejo Luz Marina; Suárez Peñaranda Diego Fernando

    2011-01-01

    Minthostachys mollis (Kunth) Griseb. o muña es un arbusto perenne que crece naturalmente en las región andina de Colombia; esta especie es ampliamente utilizada por las comunidades rurales en donde es valorada por sus propiedades medicinales para tratar diferentes afecciones y como control de larvas de insectos transmisores de enfermedades; sin embargo, las poblaciones naturales de esta planta han sido fuertemente reducidas por acción antrópica, por lo tanto, es necesario generar tecnologías...

  17. Riipaisevia melodioita ja tulista taiturointia : Karakteerierot Max Bruchin Viulukonsertossa nro 1 g-molli Op. 26

    Kuusirati, Veera

    2017-01-01

    Opinnäytetyössäni tarkastelen Max Bruchin Viulukonserttoa nro 1 g-molli op. 26 ja sen tul-kitsemista ja harjoittelua viulistin näkökulmasta. Syvennyn erityisesti pohtimaan, miten kon-serttoon sisältyvät karakteerierot saisi mahdollisimman hyvin kuulumaan soitossa. Lisäksi kerron Bruchin elämästä ja urasta säveltäjänä. Tarkastelen konserttoa analysoimalla teosta tyylillisesti ja rakenteellisesti ja partituuria tut-kimalla. Lisäksi olen tutkinut teosta soittamalla ja harjoittelemalla sitä. ...

  18. Constituintes químicos das folhas e do caule de Coccoloba mollisCasaretto (Polygonaceae)

    Oliveira,Patrícia Emanuella S.; Santos,Wagner S. dos; Conserva,Lucia M.; Lemos,Rosangela P. de Lyra

    2008-01-01

    O estudo químico das frações neutra em hexano das folhas e em diclorometano do caule de Coccoloba mollis resultou no isolamento de um triterpeno pentacíclico (simiarenol), que pela primeira vez ocorre em Polygonaceae, dois fitoesteróides (sitostenona e sitosterol), um diterpeno (trans-fitol) e de um benzenóide (ácido vanílico) que está sendo descrito pela vez neste gênero. A identificação estrutural destes compostos foi feita com base na análise dos dados espectrais (IV, EM e RMN, incluindo D...

  19. Effect of Light and Giberellic Acid (AG3) on the Germination of Minthostachys mollis Kunth. Griseb. (Labiatae)

    Suárez, Diego; Fernández Alonso, José Luis; Marina Melgarejo, Luz

    2011-01-01

    Minthostachys mollis (Kunth) Griseb., es un arbusto perenne que crece en la región andina de Colombia; es ampliamente utilizada por las comunidades rurales donde es valorado por sus propiedades medicinales. El objetivo de este estudio fue determinar el efecto de la luz (luz roja, luz blanca y luz natural) y del ácido giberélico (0, 5, 15, 25 ppm) en el proceso de germinación de M. mollis. Se encontró inhibición de la germinación bajo condiciones de oscuridad. No se observó efecto de AG3 sobre...

  20. The effect of growth regulators on post-harvest Alchemilla mollis (Bauser Rothm. leaf longevity

    Janowska Beata

    2016-12-01

    Full Text Available Leaves of Alchemilla mollis (Bauser Rothm. were the subject of the study. The leaves were harvested early in the morning from the department’s ornamental plant collection. Selected leaves were fully-developed and showed no signs of damage or discolouring. Gibberellic acid (GA3, benzyladenine (BA, meta-methoxytopolin (MemT and its riboside (MemTR at concentrations of 25, 50 and 75 mg dm−3 were applied in the form of solutions to four-hour leaf-conditioning in the room at a temperature of 18-20°C. After conditioning, the leaves were placed in distilled water. Leaves put into distilled water immediately after cutting served as the control. The post-harvest longevity of leaves of Alchemilla mollis was 7.2-11.8 days. The conditioning of leaves in gibberellic acid solutions at concentrations of 25-50 mg dm−3, benzyladenine at concentrations of 25 mg dm−3 and meta-methoxytopolin and its riboside at concentrations of 75 mg dm−3 extended the post-harvest longevity of leaves by 10.1-81.9%. The conditioning of leaves in gibberellic acid at a concentration of 50 mg dm−3 inhibited the degradation of chlorophyll, as indicated by the highest SPAD index values.

  1. Consumo foliar e aspectos biológicos de Urbanus acawoios (Lep.: Hesperiidae alimentado com folíolos de Clitoria fairchildiana (Leguminosae: Faboideae em três níveis de maturidade Leaf consumption and biological aspects of Urbanus acawoios (Lep.: Hesperiidae fed with Clitoria fairchildiana (Leguminosae: Faboideae leaflets in three maturity stages

    Henrique Trevisan

    2004-02-01

    Full Text Available Urbanus acawoios (Lepidoptera: Hesperiidae tem como principal hospedeiro a essência arbórea Clitoria fairchildiana (Leguminosae: Faboideae, utilizada em diversos estados brasileiros, principalmente, na arborização urbana. Nos últimos anos, foram registrados surtos anuais deste inseto, principalmente no estado do Rio de Janeiro, com desfolha intensa e conseqüente estresse fisiológico das árvores. Este trabalho teve como objetivo avaliar, em laboratório, o consumo foliar e aspectos biológicos de U. acawoios, alimentado com folíolos de C. fairchildiana em três diferentes estádios de maturidade: novos, intermediários e velhos. O consumo de lagartas de U. acawoios foi maior com folíolos novos e a duração das fases de desenvolvimento, a longevidade e o ciclo de vida desse inseto foram afetados pelo tipo de folíolo de C. fairchildiana. A porcentagem de sobrevivência de U. acawoios foi maior para indivíduos alimentados com folíolos de C. fairchildiana de maturidade intermediária.Clitoria fairchildiana (Leguminosae: Faboideae is a tree used in several Brazilian states in the urban arborization and is the main host of Urbanus acawoios (Lepidoptera: Hesperiidae. Annual outbreaks of this defoliator insect was registered in the last years mainly in Rio de Janeiro state where these trees are submitted a physiologic stress after being completely stripped. The aim of this study is to evaluate the leaf consumption and biological aspects of U. acawoios caterpillars fed with C. fairchildiana leaflets in laboratory in three maturity stages: new, middlemen and old. The consumption of U. acawoios caterpillars was larger with new leaflets and the duration of the development stages, the longevity and the life cycle were affected for the type of C. fairchildiana leaflet. The U. acawoios survival percentage were larger for individuals fed with C. fairchildiana middlemen leaflets.

  2. Who is 'Molly'? MDMA adulterants by product name and the impact of harm-reduction services at raves.

    Saleemi, Sarah; Pennybaker, Steven J; Wooldridge, Missi; Johnson, Matthew W

    2017-08-01

    Methylenedioxymethamphetamine (MDMA), often sold as 'Ecstasy' or 'Molly', is commonly used at music festivals and reported to be responsible for an increase in deaths over the last decade. Ecstasy is often adulterated and contains compounds that increase morbidity and mortality. While users and clinicians commonly assume that products sold as Molly are less-adulterated MDMA products, this has not been tested. Additionally, while pill-testing services are sometimes available at raves, the assumption that these services decrease risky drug use has not been studied. This study analyzed data collected by the pill-testing organization, DanceSafe, from events across the United States from 2010 to 2015. Colorimetric reagent assays identified MDMA in only 60% of the 529 samples collected. No significant difference in the percentage of samples testing positive for MDMA was determined between Ecstasy and Molly. Individuals were significantly less likely to report intent to use a product if testing did not identify MDMA (relative risk (RR) = 0.56, p = 0.01). Results suggest that Molly is not a less-adulterated substance, and that pill-testing services are a legitimate harm-reduction service that decreases intent to consume potentially dangerous substances and may warrant consideration by legislators for legal protection. Future research should further examine the direct effects of pill-testing services and include more extensive pill-testing methods.

  3. [Prediction of the suitable distribution and responses to climate change of Elaeagnus mollis in Shanxi Province, China].

    Zhang, Yin Bo; Gao, Chen Hong; Qin, Hao

    2018-04-01

    Understanding the responses of the habitats of endangered species to climate change is of great significance for biodiversity conservation and the maintenance of the integrity of ecosystem function. In this study, the potential suitable distribution habitats of Elaeagnus mollis in Shanxi Province was simulated by the maximum entropy model, based on 73 occurrence field records and 35 environmental factors under the current climate condition. Moreover, with the Fifth Assessment Report of Intergovernmental Panel on Climate Change, the dynamics of distribution pattern was analyzed for E. mollis under different climate scenarios. The results showed that the area under the receiver operating characteristic curve (AUC) value was 0.987, indicating that the data fitted the model very well and that the prediction was highly reliable. Results from the Jackknife test showed that the main environmental variables affecting the E. mollis distribution were the precipitation seasonality, the range of annual temperature, annual mean temperature, isothermality, annual precipitation, and pH of topsoil, with the cumulative contribution reaching 94.8%. At present, the potential suitable habitats of E. mollis are mainly located in two regions, the southern of Lyuliang Mountain and Zhongtiao Mountain in Shanxi Province. Under different climate scenarios, the total suitable area of E. mollis would shrink in 2070s. In RCP 2.6 the suitable area would firstly increase and then decrease, while in RCP 4.5 and RCP 8.5 it would response sensitively and first decrease and then increase. Its spatial distribution in two suitable regions would show divergent responses to climate change. The distribution in southern Lyuliang Mountain would fluctuate slightly in latitudinal direction, while that in Zhongtiao Mountain would migrate along elevation.

  4. Flash Extraction and Physicochemical Characterization of Oil from Elaeagnus mollis Diels Seeds.

    Kan, Lina; Wang, Lin; Ding, Qingzhen; Wu, Yanwen; Ouyang, Jie

    2017-04-03

    A flash extraction method was used to isolate Elaeagnus mollis oil (EMO). The optimal extraction parameters, sample/solvent ratio and extraction temperature, were determined to be 1:10 (g/mL) and 40°C, respectively. Especially, the extraction yield reached 49.30% when the extraction time was as short as 2 min. No obvious difference was observed in fatty acid composition, iodine value, saponification number, total phenolic content and tocopherol content between flash-extracted EMO and Soxhlet-extracted EMO, but their physicochemical values were lower than those of cold-pressed EMO. Cold-pressed EMO had higher oxidation stability, DPPH (1-diphenyl-2-picrylhydrazyl) and hydroxyl radical-scavenging activities than flash-extracted EMO and Soxlet extracted EMO. The flash extraction is demonstrated to be an alternative, efficient method for the vegetable oil production.

  5. Melitofilia em Canavalia rosea (Sw. DC. (Leguminosae-Papilionoideae

    Fábio Verçoza

    2010-11-01

    Abstract. This work aimed to study the floral biology and the pollination’s ecology of Canavalia rosea (Sw. DC. (Leguminosae-Papilionoideae by bees in the sandbank vegetation of the Grumari Environmental Protection Area (EPA , located in the western zone of Rio de Janeiro’s city. The study was developed between the months of June of 2008 to June of 2009. Sampling on morphology, color and odor of the flowers of the species were made. The number of open flowers per day in each individual was recorded, as well as the opening steps, determining the period of anthesis. The occurrence of floral visitors was recorded through the observation of the visit’s time, of the adaptability for pollination, of the ease of access to the reward and of the intra-floral behavior played. C. rosea occurs in psamophily communities and in post-beach sandbank of Grumari’s EPA. It presents typical characteristics of mellitophily (pollination by bees and the flowers are pollinated by Xylocopa frontalis Oliver. It also receives visits from Tetragonisca angustula Latreille, Trigona spinipes Fabricius and Apis mellifera Linnaeus, which collects pollen without pollinating the flowers. X. frontalis proved to be the only effective pollinator of C. rosea in the Grumari sandbank, making the plant directly dependent on this species for fruit and seed’s production in this location.

  6. A new generic system for the pantropical Caesalpinia group (Leguminosae

    Edeline Gagnon

    2016-10-01

    Full Text Available The Caesalpinia group is a large pantropical clade of ca. 205 species in subfamily Caesalpinioideae (Leguminosae in which generic delimitation has been in a state of considerable flux. Here we present new phylogenetic analyses based on five plastid and one nuclear ribosomal marker, with dense taxon sampling including 172 (84% of the species and representatives of all previously described genera in the Caesalpinia group. These analyses show that the current classification of the Caesalpinia group into 21 genera needs to be revised. Several genera (Poincianella, Erythrostemon, Cenostigma and Caesalpinia sensu Lewis, 2005 are non-monophyletic and several previously unclassified Asian species segregate into clades that merit recognition at generic rank. In addition, the near-completeness of our taxon sampling identifies three species that do not belong in any of the main clades and these are recognised as new monospecific genera. A new generic classification of the Caesalpinia group is presented including a key for the identification of genera, full generic descriptions, illustrations (drawings and photo plates of all genera, and (for most genera the nomenclatural transfer of species to their correct genus. We recognise 26 genera, with reinstatement of two previously described genera (Biancaea Tod., Denisophytum R. Vig., re-delimitation and expansion of several others (Moullava, Cenostigma, Libidibia and Erythrostemon, contraction of Caesalpinia s.s. and description of four new ones (Gelrebia, Paubrasilia, Hererolandia and Hultholia, and make 75 new nomenclatural combinations in this new generic system.

  7. Anatomy of 31 species from Mimosoideae (Leguminosae) subfamily on Venezuela

    Leon, H; Williams, J.

    2008-01-01

    This paper is about the wood anatomy of 31 species, belonging to 17 genera, of the Mimosoideae subfamily (Leguminosae), proceeding from different geographical regions of Venezuela. For each species, one to five individuals were studied. The descriptions were realized according to the IAWA Committee(1989). The studied species may be divided in two groups according to the presence or absence of septate fibers. All species of Inga showed septate fibers, whereas Albizia and Enterolobium included species with septate fibers and also species with non-septate fibers. The quantitative characteristics of the vessels and the width of rays showed sufficient variation as to be considered important characteristics from ataxonomic point of view. The most common parenchyma type was vasicetric, aliform and confluent. In Calliandra laxa, Prosopis juliflora and Zygia longifolia the main parenchyma type was in wide bands; whereas in Cedrelinga cateniformis, the main parenchyma type was thin vasicentric. All species studied, with the exception of Cedrelinga cateniformis, presented prismatic crystals in the parenchymatous axials cells. In spite of finding certain anatomical uniformity, it was possible to elaborate a key for the identification of the studied species.

  8. Nutrição mineral da fava d'anta Mineral nutrition of Dimorphandra mollis

    Candido Alves da Costa

    2007-03-01

    Full Text Available Com o objetivo de caracterizar as limitações nutricionais na produção, no crescimento, nutrição e teores de flavonóides totais em fava-d'anta, um experimento foi conduzido em casa de vegetação com amostras de 0-20 cm de profundidade de um Latossolo Vermelho sob vegetação de cerrado. O delineamento experimental utilizado foi o inteiramente casualizado com 13 tratamentos e três repetições. Os tratamentos constaram da adubação com elemento faltante (omitindo-se a calagem e cada um dos nutrientes N, P, K, S, B, Cu, Fe e Zn. Verificou-se que a fava d'anta é tolerante à acidez do solo e sensível à deficiência de fósforo e potássio. O teor de flavonóides totais não variou entre os tratamentos.Aiming to characterize the nutritional limitations on growth, nutrition and total flavonoids concentration of the Dimorphandra mollis, an experiment was conducted in a greenhouse with 0-20 cm samples of an Oxisol under Cerrado vegetation. The experimental design was completely randomized with 13 treatments and three replications. The treatments consisted of fertilization with missing element technique (with omission of liming and each one of the macro and micronutrients N, P, K, S, B, Cu, Fe and Zn. Dimorphandra mollis plant is tolerant to acid soil and responsive to the omission of phosphorus and potassium. The total flavonoids concentration was not influenced by the treatments.

  9. Brain nonapeptide and gonadal steroid responses to deprivation of heterosexual contact in the black molly

    Ewa Kulczykowska

    2014-12-01

    Full Text Available Fish may respond to different social situations with changes in both physiology and behaviour. A unique feature of fish is that social interactions between males and females strongly affect the sexual characteristics of individuals. Here we provide the first insight into the endocrine background of two phenomena that occur in mono-sex groups of the black molly (Poecilia sphenops: masculinization in females and same-sex sexual behaviour, manifested by gonopodial displays towards same-sex tank mates and copulation attempts in males. In socially controlled situations, brain neurohormones impact phenotypic sex determination and sexual behaviour. Among these hormones are the nonapeptides arginine vasotocin (AVT and isotocin (IT, counterparts of the well-known mammalian arginine vasopressin and oxytocin, respectively. To reveal potential hormone interactions, we measured the concentrations of bioactive AVT and IT in the brain, along with those of the sex steroids 17β-estradiol and 11-ketotestosterone in the gonads, of females, masculinized females, males displaying same-sex sexual behaviour and those who did not. These data were supplemented by morphological and histological analyses of the gonads. Correlations between brain nonapeptides and gonadal steroids strongly suggest a cross talk between hormonal systems. In the black molly, the masculinization process was associated with the production of brain AVT and gonadal steroids, whereas same-sex sexual behaviour involves both brain nonapeptides, but neither of the sex steroids. This study extends current knowledge of endocrine control of phenotypic sex and sexual behaviour in fish and for the first time links brain nonapeptides with the occurrence of male-male sexual behaviour in lower vertebrates.

  10. Chemical composition and antimicrobial activity of the essential oil of Plectranthus mollis (Lamiaceae from Western Ghats region, Karnataka, India

    Rajesh K. Joshi

    2014-08-01

    Full Text Available Plectranthus is a large and widespread genus with a diversity of ethnobotanical uses. In traditional medicine P. mollis has been used against snakebites, respiratory stimulant and vasoconstrictor, cardiac depressant, cure for haemorrahage, treatment of mental retardation and rheumatism. P. mollis is reported to exhibit relaxant activity on smooth and skeletal muscles, and has cytotoxic and anti-tumour promoting activity, and can be used in the treatment of cancer. The aim of the present study was to identify chemical composition of the essential oil of P. mollis and to evaluate antimicrobial efficacy of the oil. The essential oil of the flowering aerial parts of P. mollis as obtained by hydro-distillation and analyzed by gas chromatography equipped with a flame ionization detector (GC-FID and gas chromatography coupled with mass spectrometry (GC/MS. Twentyseven compounds were identified, which comprised 98.6% of the total constituents. The main compound was identified as fenchone (32.3%, followed by α-humulene (17.3%, piperitenone oxide (8.5%, cis-piperitone oxide (6.0% and E-β-farnesene (5.9%. The oil was found rich in oxygenated monoterpenes type constituents (52.0%, followed by sesquiterpene hydrocarbons (40.2%, oxygenated sesquiterpenes (4.9%, and monoterpene hydrocarbons (1.5%. Antimicrobial activity of the essential oil of P. mollis was tested against six Gram-positive and eight Gram negative bacteria, and three fungi, by using the tube dilution method. The oil was active against the tested Gram-positive and Gram-negative bacteria, and fungi at a concentration range of 0.065±0.008-0.937±0.139mg/mL, 0.468±0.069-3.333±0.527 mg/mL and 0.117±0.0170.338±0.062mg/mL respectively. The present study revealed that the oil constituents somehow were qualitatively similar and quantitatively different than earlier reports from different parts of the world. The essential oil of P. mollis has found to be antimicrobial activity which can be

  11. Cardiac MOLLI T1 mapping at 3.0 T: comparison of patient-adaptive dual-source RF and conventional RF transmission.

    Rasper, Michael; Nadjiri, Jonathan; Sträter, Alexandra S; Settles, Marcus; Laugwitz, Karl-Ludwig; Rummeny, Ernst J; Huber, Armin M

    2017-06-01

    To prospectively compare image quality and myocardial T 1 relaxation times of modified Look-Locker inversion recovery (MOLLI) imaging at 3.0 T (T) acquired with patient-adaptive dual-source (DS) and conventional single-source (SS) radiofrequency (RF) transmission. Pre- and post-contrast MOLLI T 1 mapping using SS and DS was acquired in 27 patients. Patient wise and segment wise analysis of T 1 times was performed. The correlation of DS MOLLI measurements with a reference spin echo sequence was analysed in phantom experiments. DS MOLLI imaging reduced T 1 standard deviation in 14 out of 16 myocardial segments (87.5%). Significant reduction of T 1 variance could be obtained in 7 segments (43.8%). DS significantly reduced myocardial T 1 variance in 16 out of 25 patients (64.0%). With conventional RF transmission, dielectric shading artefacts occurred in six patients causing diagnostic uncertainty. No according artefacts were found on DS images. DS image findings were in accordance with conventional T 1 mapping and late gadolinium enhancement (LGE) imaging. Phantom experiments demonstrated good correlation of myocardial T 1 time between DS MOLLI and spin echo imaging. Dual-source RF transmission enhances myocardial T 1 homogeneity in MOLLI imaging at 3.0 T. The reduction of signal inhomogeneities and artefacts due to dielectric shading is likely to enhance diagnostic confidence.

  12. Effect of light and gibberellic acid (AG3) on the germination of minthostachys mollis kunth. Griseb. (labiatae)

    Suarez, Diego; Fernandez Alonso, Jose Luis; Melgarejo, Luz Marina

    2011-01-01

    Minthostachys mollis (Kunth) griseb, is a perennial shrub that grows in the Andean region of Colombia; this species is widely used by rural communities where it is valued for its medicinal properties. The aim of this study was to determine the effect of light (red light, white light, and natural light) and gibberellic acid (0, 5, 15, 25 ppm) on the process of germination of M. mollis. We found a strong inhibition of germination under conditions of darkness. We do not observe effect of AG3 on germination. The germination percentages obtained were above 80% (positive photoblastic seeds) for the three proposed lighting treatments where red-light treatment had a most significant effect on the germination process.

  13. Using targeted enrichment of nuclear genes to increase phylogenetic resolution in the neotropical rain forest genus Inga (Leguminosae: Mimosoideae

    James A Nicholls

    2015-09-01

    Full Text Available Evolutionary radiations are prominent and pervasive across many plant lineages in diverse geographical and ecological settings; in neotropical rainforests there is growing evidence suggesting that a significant fraction of species richness is the result of recent radiations. Understanding the evolutionary trajectories and mechanisms underlying these radiations demands much greater phylogenetic resolution than is currently available for these groups. The neotropical tree genus Inga (Leguminosae is a good example, with ~300 extant species and a crown age of 2-10 MY, yet over 6kb of plastid and nuclear DNA sequence data gives only poor phylogenetic resolution among species. Here we explore the use of larger-scale nuclear gene data obtained though targeted enrichment to increase phylogenetic resolution within Inga. Transcriptome data from three Inga species were used to select 264 nuclear loci for targeted enrichment and sequencing. Following quality control to remove probable paralogs from these sequence data, the final dataset comprised 259,313 bases from 194 loci for 24 accessions representing 22 Inga species and an outgroup (Zygia. Bayesian phylogenies reconstructed using either all loci concatenated or a subset of 60 loci in a gene-tree/species-tree approach yielded highly resolved phylogenies. We used coalescent approaches to show that the same targeted enrichment data also have significant power to discriminate among alternative within-species population histories in the widespread species I. umbellifera. In either application, targeted enrichment simplifies the informatics challenge of identifying orthologous loci associated with de novo genome sequencing. We conclude that targeted enrichment provides the large volumes of phylogenetically-informative sequence data required to resolve relationships within recent plant species radiations, both at the species level and for within-species phylogeographic studies.

  14. Allele-specific expression at the androgen receptor alpha gene in a hybrid unisexual fish, the Amazon molly (Poecilia formosa.

    Fangjun Zhu

    Full Text Available The all-female Amazon molly (Poecilia formosa is the result of a hybridization of the Atlantic molly (P. mexicana and the sailfin molly (P. latipinna approximately 120,000 years ago. As a gynogenetic species, P. formosa needs to copulate with heterospecific males including males from one of its bisexual ancestral species. However, the sperm only triggers embryogenesis of the diploid eggs. The genetic information of the sperm donor typically will not contribute to the next generation of P. formosa. Hence, P. formosa possesses generally one allele from each of its ancestral species at any genetic locus. This raises the question whether both ancestral alleles are equally expressed in P. formosa. Allele-specific expression (ASE has been previously assessed in various organisms, e.g., human and fish, and ASE was found to be important in the context of phenotypic variability and disease. In this study, we utilized Real-Time PCR techniques to estimate ASE of the androgen receptor alpha (arα gene in several distinct tissues of Amazon mollies. We found an allelic bias favoring the maternal ancestor (P. mexicana allele in ovarian tissue. This allelic bias was not observed in the gill or the brain tissue. Sequencing of the promoter regions of both alleles revealed an association between an Indel in a known CpG island and differential expression. Future studies may reveal whether our observed cis-regulatory divergence is caused by an ovary-specific trans-regulatory element, preferentially activating the allele of the maternal ancestor.

  15. Estudo do sistema de reprodução da fava-d'anta (Dimorphandra mollis Benth.

    A.D.R. Mendes

    2013-01-01

    Full Text Available Entre as plantas nativas de uso medicinal do Cerrado brasileiro encontra-se a fava-d'anta (Dimorphandra mollis Benth com alto potencial econômico por possuir inúmeras potencialidades medicinais e fitoquímicas. A indústria extrai dos frutos os princípios ativos rutina, quercetina, e ramnose, dentre outros, usados na fabricação de medicamentos e cosméticos, principalmente no exterior. O conhecimento do sistema reprodutivo da espécie é fundamental para sua conservação e manejo. O presente trabalho objetivou determinar as características morfométricas das flores e caracterizar o sistema reprodutivo da D. mollis em área de Cerrado inalterada antropomorficamente, no município de Olhos D'água - MG. Para as características morfométricas, diâmetro da flor, comprimento da flor, do ovário, e da antera, foram utilizadas cinco flores em pré-antese. Para a determinação do sistema reprodutivo utilizou-se a razão pólen:óvulo (P:O, em 40 flores. As flores da D. mollis apresentaram comprimento da flor de 3,00 mm, diâmetro da flor de 2,00 mm, comprimento do óvulo de 2,60 mm, comprimento da antera de 1,57 mm, e o número de óvulos e de anteras foram 20 e 5,8, respectivamente. A razão P:O foi 765,030, sendo que esse índice não é afetado pelas características morfométricas. O sistema reprodutivo da D. mollis foi classificado como alógama facultativa.

  16. Quantitative variations in the essential oil of Minthostachys mollis (Kunth.) Griseb. in response to insects with different feeding habits.

    Banchio, Erika; Zygadlo, Julio; Valladares, Graciela R

    2005-08-24

    Plants display a diverse array of inducible changes in secondary metabolites following insect herbivory. Herbivores differ in their feeding behavior, physiology, and mode of attachment to the leaf surface, and such variations might be reflected in the induced responses of damaged plants. Induced changes were analyzed for Minthostachys mollis, a Lamiaceae with medicinal and aromatic uses, and four species of folivore insects with different feeding habits (chewing, scraping, sap-sucking, and puncturing). In M. mollis leaves experimentally exposed to the insects, levels of the two dominant monoterpenes pulegone and menthone were assessed 24 and 48 h after wounding. Menthone content generally decreased in the essential oil of damaged leaves, whereas pulegone concentration increased in all treatments. These changes occurred also in the adjacent undamaged leaves, suggesting a systemic response. The relatively uniform response to different kinds of damage could be attributable to the presence of such a strongly active compound as pulegone in the essential oil of M. mollis. The effects of wounding on essential oil concentration may be significant from a commercial point of view.

  17. De Novo Glutamine Synthesis

    He, Qiao; Shi, Xinchong; Zhang, Linqi; Yi, Chang; Zhang, Xuezhen

    2016-01-01

    Purpose: The aim of this study was to investigate the role of de novo glutamine (Gln) synthesis in the proliferation of C6 glioma cells and its detection with 13N-ammonia. Methods: Chronic Gln-deprived C6 glioma (0.06C6) cells were established. The proliferation rates of C6 and 0.06C6 cells were measured under the conditions of Gln deprivation along with or without the addition of ammonia or glutamine synthetase (GS) inhibitor. 13N-ammonia uptake was assessed in C6 cells by gamma counting and in rats with C6 and 0.06C6 xenografts by micro–positron emission tomography (PET) scanning. The expression of GS in C6 cells and xenografts was assessed by Western blotting and immunohistochemistry, respectively. Results: The Gln-deprived C6 cells showed decreased proliferation ability but had a significant increase in GS expression. Furthermore, we found that low concentration of ammonia was sufficient to maintain the proliferation of Gln-deprived C6 cells, and 13N-ammonia uptake in C6 cells showed Gln-dependent decrease, whereas inhibition of GS markedly reduced the proliferation of C6 cells as well as the uptake of 13N-ammoina. Additionally, microPET/computed tomography exhibited that subcutaneous 0.06C6 xenografts had higher 13N-ammonia uptake and GS expression in contrast to C6 xenografts. Conclusion: De novo Gln synthesis through ammonia–glutamate reaction plays an important role in the proliferation of C6 cells. 13N-ammonia can be a potential metabolic PET tracer for Gln-dependent tumors. PMID:27118759

  18. Erich Fromm's productivity: creativity as exemplified by Joyce's blooming of Leopold and Molly.

    Harrell, Valentina

    2005-01-01

    According to Erich Fromm, the productive character expresses what he called the life force in ways that are, by nature, artistic in quality. His valuing of the vital and the artistic, fueled by this life force in our potential to be human, serves as the cornerstone of his model of psychoanalysis. Gilbert Rose, author of Necessary Illusion: Art as "Witness", also has identified the parallel between analytic and artistic processes, building on the assumption that the therapeutic alliance and the aesthetic alliance are one and the same. In elaborating this assumption and extending the parallel between Rose and Fromm, I draw the conclusion that the qualities of relationships have an impact on one's ability to express oneself creatively, to live an artistic life--that is, to live productively. Psychoanalysis is, in practice, a process that is artistic, creative, and re-creative in nature. To the degree that authentic expression of emotionally charged implicit knowledge of the ineffable (the emotional life that resides deep in the bodymind) results in transformation and healing, the process is artistic in nature. This process is exemplified by examining the life and literary creations of James Joyce, especially Joyce's characters of Molly and Leopold Bloom in Ulysses.

  19. Malaria Disease Mapping in Malaysia based on Besag-York-Mollie (BYM) Model

    Azah Samat, Nor; Mey, Liew Wan

    2017-09-01

    Disease mapping is the visual representation of the geographical distribution which give an overview info about the incidence of disease within a population through spatial epidemiology data. Based on the result of map, it helps in monitoring and planning resource needs at all levels of health care and designing appropriate interventions, tailored towards areas that deserve closer scrutiny or communities that lead to further investigations to identify important risk factors. Therefore, the choice of statistical model used for relative risk estimation is important because production of disease risk map relies on the model used. This paper proposes Besag-York-Mollie (BYM) model to estimate the relative risk for Malaria in Malaysia. The analysis involved using the number of Malaria cases that obtained from the Ministry of Health Malaysia. The outcomes of analysis are displayed through graph and map, including Malaria disease risk map that constructed according to the estimation of relative risk. The distribution of high and low risk areas of Malaria disease occurrences for all states in Malaysia can be identified in the risk map.

  20. Estudo anatômico de folha e caule de Elephantopus mollis Kunth (Asteraceae

    Cláudia Bonissoni Empinotti

    Full Text Available Conhecida comumente como erva-de-colégio, erva-grossa e sussuaiá, Elephantopus mollis Kunth (Asteraceae é uma espécie herbácea perene, de base sublenhosa, ramos curtos e flores arroxeadas. Suas folhas são empregadas como emoliente, resolutivo, sudorífico e no tratamento de bronquite, tosse e gripe na medicina popular. O objetivo deste trabalho foi estudar caracteres anatômicos foliares e caulinares, a fim de fornecer subsídios aplicáveis à identificação da planta medicinal. Folhas adultas e fragmentos de caules foram fixados, seccionados e corados com azul de astra/fucsina básica ou com azul de toluidina. Testes microquímicos e análise ultra-estrutural de superfície foram também executados. A folha possui epiderme uniestratificada, recoberta por cutícula estriada e, em vista frontal, tem células com contorno ondulado. Ocorrem tricomas tectores e glandulares. Os primeiros são eretos, pluricelulares e unisseriados. Os tricomas glandulares são capitados e bisseriados. O mesofilo é dorsiventral e a nervura central é percorrida por feixes vasculares colaterais dispostos em arco aberto. O caule, em estrutura secundária inicial, possui epiderme unisseriada com cutícula estriada e tricomas semelhantes aos da folha. No córtex, observam-se colênquima anelar alternado com clorênquima e endoderme com estrias de Caspary. Calotas esclerenquimáticas apõem-se ao floema. Este é formado pelo câmbio vascular em direção à periferia e o xilema é gerado de modo centrípeto. A medula é parenquimática. Pequenos cristais de oxalato de cálcio estão presentes na folha e no caule.

  1. Respuesta de cinco leguminosas de cobertura a la fertilización fosfórica

    Robin Gómez Gómez

    2018-05-01

    Full Text Available Los cultivos de cobertura de especies leguminosas son sembradas para el control de malezas, prevención de la erosión del suelo y aporte de nitrógeno al suelo. El objetivo de este estudio fue evaluar la respuesta de las leguminosas de cobertura Mucuna pruriens cv. cinza, Mucuna pruriens cv. preta, Crotalaria spectabilis, Vigna radiata y Pueraria phaseoloides a la fertilización fosfórica, en dos épocas del año. El experimento se realizó en un invernadero en la Estación Experimental Agrícola Fabio Baudrit Moreno (EEAFBM de la Universidad de Costa Rica, en Alajuela, Costa Rica, en el periodo de noviembre del 2012 a enero del 2013, y se repitió de abril a mayo del 2013. Se aplicaron dosis de 0, 30, 60 y 90 kg P2O5/ha en suelo esterilizado con vapor y posteriormente, utilizado para llenar potes de 2 kg de capacidad. Se evaluó altura de planta, número de hojas verdaderas y peso seco luego de 18-26 días de la siembra, según la especie de leguminosa. Tuvieron un mayor crecimiento C. spectabilis Ruth, V. radiata (L Wilczek y P. phaseoloides (Roxb, cuando fueron fertilizadas con 60 kg P2O5/ha, mientras que, los dos cultivares de M. pruriens no incrementaron su crecimiento con la fertilización fosfórica. El fósforo a la siembra de las leguminosas de semilla pequeña aceleró su crecimiento, lo que indica la importancia de validar el empleo de este fertilizante para la obtención de una rápida cobertura del suelo, lo cual podría disminuir la competencia con las malezas.

  2. Avances en la evaluación de leguminosas anuales distintas del T. subterraneum L.

    Moreno Cruz, V.; Gallardo Martínez, D.

    2011-01-01

    Dado los problemas actuales de persistencia del T. subterraneum en muchas áreas, debidas en general, al estrecho margen de adaptacóin de las variedades disponibles actualmente, se indican en el presente trabajo otras especies de leguminosas anuales que pueden ser una alternativa, en los pastos del S-O, al referido Trifolium subterraneum. Se incluye, entre las evaluaciones realizadas, las especies Medicago polymorpha, Trifolium glomeratum y Ornithopus compressus, todas ellas presentes en los s...

  3. Chemical composition and in vitro antibacterial activity of the essential oil of Minthostachys mollis (Kunth) Griseb Vaught from the Venezuelan Andes.

    Mora, Flor D; Araque, María; Rojas, Luis B; Ramirez, Rosslyn; Silva, Bladimiro; Usubillaga, Alfredo

    2009-07-01

    Chemical constituents of the essential oil from the leaves of Minthostachys mollis (Kunth) Griseb Vaught var. mollis collected in January 2008 at Tuñame, Trujillo State, Venezuela, were separated and identified by GC-MS analysis. The essential oil was obtained by hydrodistillation and thirteen components (98.5% of the sample) were identified by comparison with the Wiley GC-MS library data base. The two major components were pulegone (55.2%) and trans-menthone (31.5%). The essential oil showed a significant inhibitory effect against Gram-positive and Gram-negative bacteria, especially Bacillus subtilis and Salmonella typhi (4 microg/mL).

  4. Acute and sub-chronic toxicity evaluations of aqueous extract from stem bark of Grewia mollis (Malvaceae in rats

    Pongri Adarki

    2017-09-01

    Full Text Available Introduction: Different parts of Grewia mollis Juss. (Malvaceae are commonly used in folk medicine to treat several ailments, including diarrhea, ulcers, rickets, cough and fever. Although several studies have proved its therapeutic effectiveness, there are very few toxicological studies on the plant. Objectives: This study was carried out to evaluate the acute and sub-chronic toxicity of the aqueous extract of G. mollis stem bark (GM in animals. Methods: In the acute study, rats were orally administrated with GM at doses of 150, 300, 600, 1200, 2400, 4800 and 9600 mg/kg to determine the oral medial lethal dose (LD50. In the chronic study, rats received three doses of GM (150, 300 and 600 mg/kg for 28 days. After the treatments, food intake, body weights, biochemical, hematological and histopathological parameters were analyzed. Results: The LD50 was estimated to be >9600 mg/kg. No significant alterations in the animal’s body weight gain, relative organs weight, serum biochemical analysis, hematological or histopathological analyses of liver, kidneys, lungs, heart and spleen were observed. Conclusions: The results of this study provided evidence that oral administration of GM at dose of 600 mg/kg is relatively safe in rats and may not exert severe toxic effects.

  5. MDMA (ecstasy/molly) use among African Americans: The perceived influence of hip-hop/rap music.

    Rigg, Khary K; Estreet, Anthony T

    2018-02-12

    Over the past two decades, the demographic profile of MDMA (ecstasy/molly) users has changed. In particular, African American MDMA use has risen in some cities. One explanation of this new trend is the drug's recent popularity (as molly) in hip-hop/rap (HHR) music. Several top rappers endorse the drug as a way to have fun or get women "loose." There are currently no studies, however, that investigate the extent to which African American MDMA users listen to HHR music or the influence that these pro-MDMA messages have on their use of the drug. To address this gap, the current study used survey data to (a) identify the extent to which HHR music is listened to by African American MDMA users and (b) assess the perceived influence of HHR music on their decision to begin using. Qualitative interview data are also presented to contextualize the influence of these messages on their use of MDMA. The findings of this study suggest that African American MDMA users are high consumers of HHR music and that pro-MDMA messages in HHR music are influencing their expectations of the drug and their decision to initiate use. These findings add to the limited amount of research on African American MDMA use and have the potential to inform future interventions.

  6. Sex-specific local life-history adaptation in surface- and cave-dwelling Atlantic mollies (Poecilia mexicana).

    Riesch, Rüdiger; Reznick, David N; Plath, Martin; Schlupp, Ingo

    2016-03-10

    Cavefishes have long been used as model organisms showcasing adaptive diversification, but does adaptation to caves also facilitate the evolution of reproductive isolation from surface ancestors? We raised offspring of wild-caught surface- and cave-dwelling ecotypes of the neotropical fish Poecilia mexicana to sexual maturity in a 12-month common garden experiment. Fish were raised under one of two food regimes (high vs. low), and this was crossed with differences in lighting conditions (permanent darkness vs. 12:12 h light:dark cycle) in a 2 × 2 factorial design, allowing us to elucidate potential patterns of local adaptation in life histories. Our results reveal a pattern of sex-specific local life-history adaptation: Surface molly females had the highest fitness in the treatment best resembling their habitat of origin (high food and a light:dark cycle), and suffered from almost complete reproductive failure in darkness, while cave molly females were not similarly affected in any treatment. Males of both ecotypes, on the other hand, showed only weak evidence for local adaptation. Nonetheless, local life-history adaptation in females likely contributes to ecological diversification in this system and other cave animals, further supporting the role of local adaptation due to strong divergent selection as a major force in ecological speciation.

  7. ACTIVIDAD ANTIMICÓTICA DEL ACEITE ESENCIAL DE LAS HOJAS DE Minthostachys mollis (MUÑA COMPARADO CON EL FLUCONAZOL EN CULTIVO DE Candida albicans

    Katherine M Alcalá-Marcos

    2011-01-01

    Full Text Available Objetivo.- Demostrar el efecto antimicótico del aceite esencial de las hojas de Minthostachys mollis (muña en comparación con el Fluconazol en cultivo de Candida albicans. Materiales y Método.- Estudio experimental. El efecto antimicótico se estudió midiendo 80 halos de inhibición distribuidos en 5 grupos mediante el método Kirby-Bauer. Se utilizó una cepa clínica de Candida albicans. Los grupos de estudio fueron grupo muña 25% (GM25%, grupo muña 50% (GM50%, grupo muña 100% (GM100%, un grupo control positivo (Fluconazol, y un grupo control negativo (aceite mineral. El análisis estadístico se realizó mediante la Prueba de Kruskal-Wallis y el Test de Dunn usando el paquete SPSS v.17.0. Se consideró un nivel de significancia 0,05.Conclusión.- El aceite esencial de las hojas de Minthostachys mollis (al 100% tuvo mayor efecto contra la Candida albicans que el Fluconazol; además, el efecto antimicótico del Fluconazol fue mayor que la Minthostachys mollis al 25%, y fue el mismo que la Minthostachys mollis al 50%.

  8. Actividad antimicótica del aceite esencial de las hojas de Minthostachys mollis (muña comparado con el Fluconazol en cultivo de Candida albicans

    Katherine M Alcalá-Marcos

    2012-09-01

    Full Text Available Objetivo.- Demostrar el efecto antimicótico del aceite esencial de las hojas de Minthostachys mollis (muña en comparación con el Fluconazol en cultivo de Candida albicans. Materiales y Método.- Estudio experimental. El efecto antimicótico se estudió midiendo 80 halos de inhibición distribuidos en 5 grupos mediante el método Kirby-Bauer. Se utilizó una cepa clínica de Candida albicans. Los grupos de estudio fueron grupo muña 25% (GM25%, grupo muña 50% (GM50%, grupo muña 100% (GM100%, un grupo control positivo (Fluconazol, y un grupo control negativo (aceite mineral. El análisis estadístico se realizó mediante la Prueba de Kruskal-Wallis y el Test de Dunn usando el paquete SPSS v.17.0. Se consideró un nivel de significancia  0,05.Conclusión.- El aceite esencial de las hojas de Minthostachys mollis (al 100% tuvo mayor efecto contra la Candida albicans que el Fluconazol; además, el efecto antimicótico del Fluconazol fue mayor que la Minthostachys mollis al 25%, y fue el mismo que la Minthostachys mollis al 50%.

  9. Development and Molecular Cytogenetic Identification of a Novel Wheat-Leymus mollis Lm#7Ns (7D Disomic Substitution Line with Stripe Rust Resistance.

    Xiaofei Yang

    Full Text Available Leymus mollis (2n = 4x = 28, NsNsXmXm possesses novel and important genes for resistance against multi-fungal diseases. The development of new wheat-L. mollis introgression lines is of great significance for wheat disease resistance breeding. M11003-3-1-15-8, a novel disomic substitution line of common wheat cv. 7182 -L. mollis, developed and selected from the BC1F5 progeny between wheat cv. 7182 and octoploid Tritileymus M47 (2n = 8x = 56, AABBDDNsNs, was characterized by morphological and cytogenetic identification, analysis of functional molecular markers, genomic in situ hybridization (GISH, sequential fluorescence in situ hybridization (FISH-genomic in situ hybridization (GISH and disease resistance evaluation. Cytological observations suggested that M11003-3-1-15-8 contained 42 chromosomes and formed 21 bivalents at meiotic metaphase I. The GISH investigations showed that line contained 40 wheat chromosomes and a pair of L. mollis chromosomes. EST-STS multiple loci markers and PLUG (PCR-based Landmark Unique Gene markers confirmed that the introduced L. mollis chromosomes belonged to homoeologous group 7, it was designated as Lm#7Ns. While nulli-tetrasomic and sequential FISH-GISH analysis using the oligonucleotide Oligo-pSc119.2 and Oligo-pTa535 as probes revealed that the wheat 7D chromosomes were absent in M11003-3-1-15-8. Therefore, it was deduced that M11003-3-1-15-8 was a wheat-L. mollis Lm#7Ns (7D disomic substitution line. Field disease resistance demonstrated that the introduced L. mollis chromosomes Lm#7Ns were responsible for the stripe rust resistance at the adult stage. Moreover, M11003-3-1-15-8 had a superior numbers of florets. The novel disomic substitution line M11003-3-1-15-8, could be exploited as an important genetic material in wheat resistance breeding programs and genetic resources.

  10. Quantitative assessment of hepatic function: modified look-locker inversion recovery (MOLLI) sequence for T1 mapping on Gd-EOB-DTPA-enhanced liver MR imaging

    Yoon, Jeong Hee [Seoul National University Hospital, Department of Radiology, Seoul (Korea, Republic of); Lee, Jeong Min; Han, Joon Koo; Choi, Byung Ihn [Seoul National University Hospital, Department of Radiology, Seoul (Korea, Republic of); Seoul National University College of Medicine, Institute of Radiation Medicine, Jongno-gu, Seoul (Korea, Republic of); Paek, Munyoung [Siemens Healthcare, Seoul (Korea, Republic of)

    2016-06-15

    To determine whether multislice T1 mapping of the liver using a modified look-locker inversion recovery (MOLLI) sequence on gadoxetic acid-enhanced magnetic resonance imaging (MRI) can be used as a quantitative tool to estimate liver function and predict the presence of oesophageal or gastric varices. Phantoms filled with gadoxetic acid were scanned three times using MOLLI sequence to test repeatability. Patients with chronic liver disease or liver cirrhosis who underwent gadoxetic acid-enhanced liver MRI including MOLLI sequence at 3 T were included (n = 343). Pre- and postcontrast T1 relaxation times of the liver (T1liver), changes between pre- and postcontrast T1liver (ΔT1liver), and adjusted postcontrast T1liver (postcontrast T1liver-T1spleen/T1spleen) were compared among Child-Pugh classes. In 62 patients who underwent endoscopy, all T1 parameters and spleen sizes were correlated with varices. Phantom study showed excellent repeatability of MOLLI sequence. As Child-Pugh scores increased, pre- and postcontrast T1liver were significantly prolonged (P < 0.001), and ΔT1liver and adjusted postcontrast T1liver decreased (P< 0.001). Adjusted postcontrast T1liver and spleen size were independently associated with varices (R{sup 2} = 0.29, P < 0.001). T1 mapping of the liver using MOLLI sequence on gadoxetic acid-enhanced MRI demonstrated potential in quantitatively estimating liver function, and adjusted postcontrast T1liver was significantly associated with varices. (orig.)

  11. Simultaneous Detection of Flavonoids, Phenolic Acids and Alkaloids in Abri Herba and Abri Mollis Herba using Liquid Chromatography Tandem Mass Spectrometry.

    Yan, Wenying; Han, Qingjie; Guo, Panpan; Wang, Chunying; Zhang, Zijian

    2016-01-01

    Abri Herba has remarkable properties, such as cleanup heat detoxification, dampness and activating blood circulation to dissipate blood stasis; as a result, it has been applied to treat acute or chronic hepatitis and mastitis. Abri mollis Herba is often used as Abri Herba. Hierarchical cluster analysis (HCA) was applied to compare the similarities and differences of the chemical compositions in the two types of medicinal materials. To establish a high-performance liquid chromatography and tandem mass spectrometry (HPLC-MS/MS) method for the simultaneous analysis of 15 flavonoids, two phenolic acids and three alkaloids in Abri Herba and Abri mollis Herba. The chromatographic separation was performed on a C18 column with a mobile phase of methanol (A), acetonitrile (B) and 0.5‰ acetic acid in water (C) using gradient elution. The detection of the target compounds was performed in multiple-reaction monitoring (MRM) mode using a hybrid quadrupole linear ion trap mass spectrometer equipped with positive/negative ion-switching electrospray ionisation (ESI) source. The developed method is reliable, sensitive and specific. In addition, the method has been successfully applied to differentiate 15 batches of Abri Herba and 27 batches of Abri mollis Herba stems. Furthermore, a comparison of the contents among stems, roots and leaves from the same strain in seven batches of Abri mollis Herba and four batches of Abri Herba has also been performed. HPLC-MS/MS method is sensitive and selective and can be suitable for the reliable quality control of Abri mollis Herba and Abri Herba. Copyright © 2015 John Wiley & Sons, Ltd.

  12. Isolation and molecular cytogenetic characterization of a wheat - Leymus mollis double monosomic addition line and its progenies with resistance to stripe rust.

    Yang, Xiaofei; Li, Xin; Wang, Changyou; Chen, Chunhuan; Tian, Zengrong; Ji, Wanquan

    2017-12-01

    A common wheat - Leymus mollis (2n = 4x = 28, NsNsXmXm) double monosomic addition line, M11003-4-3-8/13/15 (2n = 44 = 42T.a + L.m2 + L.m3), with stripe rust resistance was developed (where T.a represents Triticum aestivum chromosome, L.m represents L. mollis chromosome, and L.m2/3 represents L. mollis chromosome of homoeologous groups 2 and 3). The progenies of line M11003-4-3-8/13/15 were characterized by cytological observation, specific molecular markers, fluorescence in situ hybridization (FISH), and genomic in situ hybridization (GISH). Among the progenies, there existed five different types (I, II, III, IV, and V) of chromosome constitution, the formulas of which were 2n = 44 = 42T.a + 1L.m2 + 1L.m3, 2n = 43 = 42T.a + 1L.m2, 2n = 43 = 42T.a + 1L.m3, 2n = 42 = 42T.a, and 2n = 44 = 42T.a + 2L.m2, respectively. Field disease screening showed that types I and III showed high resistance to stripe rust, while types II, IV, and V were susceptible. Leymus mollis was almost immune to stripe rust, whereas the wheat parent, cultivar 7182, was susceptible. Therefore, we concluded that the stripe rust resistance originated from L. mollis. These various lines could be further fully exploited as important disease resistance materials to enrich wheat genetic resources.

  13. Sesquiterpenes and other constituents from leaves of Pterodon pubescens Benth (Leguminosae); Sesquiterpenos e outros constituintes das folhas de Pterodon pubescens Benth (Leguminosae)

    Miranda, Mayker Lazaro Dantas; Garcez, Fernanda Rodrigues; Garcez, Walmir Silva, E-mail: walmir.garcez@ufms.br [Universidade Federal de Mato Grosso do Sul (UFMS), Campo Grande, MS (Brazil). Instituto de Quimica; Abot, Alfredo Raul [Universidade Estadual de Mato Grosso do Sul (UEMS), Aquidauana, MS (Brazil)

    2014-05-15

    In addition to β-sitosterol, stigmasterol, phaeophitin A, luteolin, kaempferol, quercetin, (+)-catechin, quercetin-3-O-α-L-rhamnopyranoside, rutin, and p-hydroxy-benzoic acid, six known sesquiterpenes, namely (rel)-2β,6β-epoxy-5β-hydroxy-isodaucane, oplopanone, 1β,6α-dihydroxy-4(15)-eudesmene, caryophyllene oxide, α-cadinol, and spathulenol, were isolated from the leaves of Pterodon pubescens (Leguminosae) growing in the Cerrado of Mato Grosso do Sul, Brazil. The (rel)-2β,6β-epoxy-5β-hydroxy-isodaucane corresponds to the correct structure of homalomenol D. The sesquiterpene oplopanone, which bears a modified cadinane skeleton, is being reported for the first time in this genus. The structures of the compounds were determined on the basis of spectral data (MS, IR, and NMR-1D and 2D) and subsequent comparison with data reported in the literature. (author)

  14. EFECTO DE LA LUZ Y DEL ÁCIDO GIBERÉLICO (AG3) EN LA GERMINACIÓN DE Minthostachys mollis KUNTH. GRISEB.(LABIATAE) Effect of Light and Giberellic Acid (AG3) on the Germination of Minthostachys mollis Kunth. Griseb. (Labiatae)

    DIEGO SUÁREZ; JOSÉ LUIS FERNÁNDEZ ALONSO; LUZ MARINA MELGAREJO

    2011-01-01

    Minthostachys mollis (Kunth) Griseb., es un arbusto perenne que crece en la región andina de Colombia; es ampliamente utilizada por las comunidades rurales donde es valorado por sus propiedades medicinales. El objetivo de este estudio fue determinar el efecto de la luz (luz roja, luz blanca y luz natural) y del ácido giberélico (0, 5, 15, 25 ppm) en el proceso de germinación de M. mollis. Se encontró inhibición de la germinación bajo condiciones de oscuridad. No se observó efecto de AG3 sobre...

  15. A new species of Bauhinia L. (Caesalpinioideae, Leguminosae) from Nakhon Phanom Province, Thailand

    Chatan, Wannachai

    2013-01-01

    Abstract A new liana species of the subfamily Caesalpinioideae (Leguminosae), namely Bauhinia nakhonphanomensis, collected from the Phulangkha National Park, Nakhon Pranom Province, Thailand, is described and illustrated. It is easily recognized by the following combination of characters: tendrilled liana, entire leaves, acuminate or caudate leaf apices, oblong or elliptic floral bud, floral bud 25–35 mm long, raceme or panicle inflorescence, 10–13 mm long hypanthium, anther opening by longitudinal slits. Important comparative morphological characters with some closely related species are discussed. PMID:24194667

  16. A new species of Bauhinia L. (Caesalpinioideae, Leguminosae from Nakhon Phanom Province, Thailand

    Wannachai Chatan

    2013-09-01

    Full Text Available A new liana species of the subfamily Caesalpinioideae (Leguminosae, namely Bauhinia nakhonphanomensis, collected from the Phulangkha National Park, Nakhon Pranom Province, Thailand, is described and illustrated. It is easily recognized by the following combination of characters: tendrilled liana, entire leaves, acuminate or caudate leaf apices, oblong or elliptic floral bud, floral bud 25–35 mm long, raceme or panicle inflorescence, 10–13 mm long hypanthium, anther opening by longitudinal slits. Important comparative morphological characters with some closely related species are discussed.

  17. Dihydronaflavonols from the leaves of Derris urucu (Leguminosae): structural elucidation and DPPH radical-scavenging activity

    Lobo, Livia T.; Silva, Geilson A. da; Ferreira, Malisson; Silva, Milton N. da; Santos, Alberdan S.; Arruda, Alberto C.; Guilhon, Gisele M.S.P.; Santos, Lourivaldo S.; Arruda, Mara Silvia P. [Universidade Federal do Para (UFPA), Belem, PA (Brazil). Inst. de Ciencias Exatas e Naturais. Programa de Pos-Graduacao em Quimica], e-mail: mspa@ufpa.br; Borges, Rosilvaldo dos Santos [Universidade Federal do Para (UFPA), Belem, PA (Brazil). Fac. de Farmacia. Inst. de Ciencias

    2009-07-01

    Derris urucu is an Amazonian plant with insecticide and ichthyotoxic properties. Studies with this species show the presence of flavonoids, mainly rotenoids, as well as stilbenes. The ethanol extract of the leaves of Derris urucu (Leguminosae) afforded three new dihydroflavonols named urucuol A (1), B (2) and C (3), and the dihydroflavonol isotirumalin (4). Their structures were elucidated by extensive analysis of 1D and 2D NMR, UV and IR spectra and MS data and comparison with literature data. The isolated compounds (1-4) were evaluated for DPPH radical scavenging activity and showed a relatively lower antioxidant ability compared to the commercial antioxidant trans-resveratrol. (author)

  18. COBERTURAS VIVAS DE LEGUMINOSAS EN EL PLÁTANO (Musa sp.) FHIA 03

    I. R. Gutiérrez; G. Pérez; R. Benega; Lourdes Gómez

    2002-01-01

    La necesidad de disminuir el consumo de agrotóxicos en el manejo del cultivo del plátano posibilita la búsqueda de alternativas viables en la esfera agroecológica, razones por las que en la Estación Experimental de la Universidad de Ciego de Avila, entre 1996 y 1998, se desarrolló un experimento para la determinación del efecto de coberturas vivas de leguminosas en una plantación de plátano FHIA-03, que se estableció en un suelo Ferralítico Rojo (Eutric ferralsol), evaluándose los efectos que...

  19. Associações Rhizobium - Leguminosas no Estado de Rondõnia

    Magalhães,Fátima M. M.; Silva,Marlene F. da

    1987-01-01

    Verificou-se a ocorrência de nodulação em mudas e/ou individuos adultos de 54 es-pécies da familia Leguminosae em áreas de floresta intacta e áreas perturbadas,no Estado de Rondônia. Das espécies observadas: Acácia polyphyllaÁ. DC., Amburana acreana(Ducke) A. C. Smith, Babieria pinnata(Pers.) Baill., Bauhinia acreanaHarms., BauhiniulongicuspÍ4 Spr. ex Benth., Cassia fastuosaWilld., Dalbergia inundataBenth., Derris ama zonicaKiiiip, Hymenaea reticulataDucke, Machaerium inundaium(Mart. ex Benth...

  20. The endangered Ethiopian endemic Crotalaria trifoliolata (Leguminosae-Papilionoideae) and its little-known habitat

    Friis, Ib; Weber, Odile; van Breugel, Paulo

    2016-01-01

    potential threats, the species is evaluated as Endangered (EN). Crotalaria trifoliolata is a bigger shrub than previously thought (up to c. 2 m high, with stems up to c. 3 cm in diam.). Molecular studies confirm that C. trifoliolata is related to the widespread C. saltiana, as predicted from morphological......Crotalaria trifoliolata Baker f. (Leguminosae: Papilionoidaeae) was, for 120 years, only known from an incomplete holotype from an uncertain Ethiopian locality. In 2013 it was rediscovered in the Bale Zone, eastern Ethiopia. Surveys in 2014 and 2015 suggest that the species is restricted...

  1. Composición Química y Actividad Antibacteriana del Aceite Esencial de Minthostachys mollis

    Torrenegra-Alarcón, Miladys; Granados-Conde, Clemente; Durán-Lengua, Marlene; León-Méndez, Glicerio; Yáñez-Rueda, Xiomara; Martínez, César; Pájaro-Castro, Nerlis

    2016-01-01

    Se evaluó la composición química y la actividad antibacteriana del aceite esencial Minthostachys mollis cultivado en el departamento de Norte de Santander, Colombia.El aceite esencial fue obtenido por hidrodestilación convencional, a partir de las hojas; se determinó densidad relativa a 20°C, índice de refracción; solubilidad de los aceites esenciales en etanol (70% v/v) y rotación óptica. La composición química se evaluó mediante cromatografía de gases/espectrómetro de masa. La actividad se ...

  2. Pesquisa de novos elementos Pesquisa de novos elementos

    Gil Mário de Macedo Grassi

    1978-11-01

    Full Text Available The present study deals with the discovery of new elements synthesized by man. The introduction discusses in general the theories about nuclear transmutation, which is the method employed in these syntheses. The study shows the importance of the Periodical Table since it is through this table that one can reach a prevision of new elements and its, properties. The discoveries of the transuranic elements, together wich the data of their first preparations are also tabulated The stability of these elements is also discussed, and future speculations are showedNeste trabalho estuda-se, teoricamente, a descoberta de novos elementos sintetizados pelo homem Na introdução apresentamos um apanhado geral sobre as teorias a respeito da transmutação nuclear, que é o método utilizado nestas sínteses. Em seguida, mostramos a importância da Tabela Periódica, pois é através dela que se chega à previsão dos novos elementos e de suas propriedades. As descobertas dos transurânicos, Já realizadas com êxito, juntamente com os dados de suas primeiras preparações são tabelados. A estabilidade destes novos elementos também é discutida, e apresentadas futuras especulações.

  3. Do benthic sediment characteristics explain the distribution of juveniles of the deposit-feeding sea cucumber Australostichopus mollis?

    Slater, Matthew J.; Jeffs, Andrew G.

    2010-10-01

    Despite the economic importance of many deposit-feeding sea cucumbers, the ecology of their juveniles is poorly understood and factors influencing juvenile habitat selection remain largely unexplained. We investigated the importance of the characteristics of the available sediment in determining the highly localised distribution of juveniles of the deposit-feeding Australasian sea cucumber Australostichopus mollis. Wild-caught juveniles were displaced to non-juvenile habitats with surface sediments characterised by lower total organic content (TOM) and nitrogen content, higher chlorophyll- a content and coarser grain size profiles compared to juvenile sites. The growth of displaced individual animals was monitored over 9 months and compared to control animals caged in the juvenile habitats. Displaced juvenile sea cucumbers had high survival rates that did not differ significantly from juvenile habitats. Displaced juveniles exhibited significantly higher specific growth rate (SGR) than those at juvenile sites ( p < 0.001), although the growth of individuals was highly variable within individual cages and among sites. The lower TOM and nitrogen content, and coarser grain size profiles at non-juvenile sites did not result in reductions in juvenile survival or growth. Higher microphytobenthic activity may have resulted in the higher growth rates observed at shallow non-juvenile sites. The SGR of juveniles over the first 6 months of the experiment ranged between 0.45% d - 1 and 0.74% d - 1 for all sites. This was followed by marked growth limitation between 6 and 9 months either as a result of increasing juvenile biomass in cages or seasonal growth limitation. A subsequent reduction in juvenile density resulted in markedly increased growth over the following 3 month period. Juvenile A. mollis show an ability to exploit a variety of benthic sediment food sources, indicating that their highly localised distribution is not due to differences in the food quality of

  4. Detection of "bath salts" and other novel psychoactive substances in hair samples of ecstasy/MDMA/"Molly" users.

    Palamar, Joseph J; Salomone, Alberto; Vincenti, Marco; Cleland, Charles M

    2016-04-01

    Ecstasy (MDMA) in the US is commonly adulterated with other drugs, but research has not focused on purity of ecstasy since the phenomenon of "Molly" (ecstasy marketed as pure MDMA) arose in the US. We piloted a rapid electronic survey in 2015 to assess use of novel psychoactive substances (NPS) and other drugs among 679 nightclub/festival-attending young adults (age 18-25) in New York City. A quarter (26.1%) of the sample provided a hair sample to be analyzed for the presence of select synthetic cathinones ("bath salts") and some other NPS. Samples were analyzed using fully validated UHPLC-MS/MS methods. To examine consistency of self-report, analyses focused on the 48 participants with an analyzable hair sample who reported lifetime ecstasy/MDMA/Molly use. Half (50.0%) of the hair samples contained MDMA, 47.9% contained butylone, and 10.4% contained methylone. Of those who reported no lifetime use of "bath salts", stimulant NPS, or unknown pills or powders, about four out of ten (41.2%) tested positive for butylone, methylone, alpha-PVP, 5/6-APB, or 4-FA. Racial minorities were more likely to test positive for butylone or test positive for NPS after reporting no lifetime use. Frequent nightclub/festival attendance was the strongest predictor of testing positive for MDMA, butylone, or methylone. Results suggest that many ecstasy-using nightclub/festival attendees may be unintentionally using "bath salts" or other NPS. Prevention and harm reduction education is needed for this population and "drug checking" (e.g., pill testing) may be beneficial for those rejecting abstinence. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

  5. Cytotoxicity of the methanol extracts of Elephantopus mollis, Kalanchoe crenata and 4 other Cameroonian medicinal plants towards human carcinoma cells.

    Kuete, Victor; Fokou, Fabrice W; Karaosmanoğlu, Oğuzhan; Beng, Veronique P; Sivas, Hülya

    2017-05-25

    Cancer still constitutes one of the major health concerns globally, causing serious threats on patients, their families, and the healthcare system. In this study, the cytotoxicity of the methanol extract of Elephantopus mollis whole plant (EMW), Enantia chlorantha bark (ECB), Kalanchoe crenata leaves (KCL), Lophira alata bark (LAB), Millettia macrophylla leaves (MML) and Phragmanthera capitata leaves (PCL) towards five human solid cancer cell lines and normal CRL2120 fibroblasts, was evaluated. Extracts were subjected to qualitative chemical screening of their secondary metabolite contents using standard methods. The cytotoxicity of samples was evaluated using neutral red uptake (NR) assay meanwhile caspase activation was detected by caspase-Glo assay. Flow cytometry was used to analyze the cell cycle distribution and the mitochondrial membrane potential (MMP) whilst spectrophotometry was used to measure the levels of reactive oxygen species (ROS). Phytochemical analysis revealed the presence of polyphenols, triterpenes and sterols in all extracts. The IC 50 values of the best samples ranged from 3.29 μg/mL (towards DLD-1 colorectal adenocarcinoma cells) to 24.38 μg/mL (against small lung cancer A549 cells) for EMW, from 2.33 μg/mL (mesothelioma SPC212 cells) to 28.96 μg/mL (HepG2 hepatocarcinoma) for KCL, and from 0.04 μg/mL (towards SPC212 cells) to 0.55 μg/mL (towards A549 cells) for doxorubicin. EMW induced apoptosis in MCF-7 cells mediated by MMP loss and increased ROS production whilst KCL induced apoptosis via ROS production. This study provides evidences of the cytotoxicity of the tested plant extract and highlights the good activity of Elephantopus mollis and Kalanchoe crenata. They deserve more exploration to develop novel cytotoxic drugs.

  6. Development of New Microsatellite DNA Markers from Apostichopus japonicus and Their Cross-Species Application in Parastichopus parvimensis and Pathallus mollis

    Guiping Chen

    2011-09-01

    Full Text Available Twenty microsatellite DNA markers were developed for sea cucumber and used to investigate polymorphisms of 60 wild Apostichopus japonicus individuals collected from China. It revealed that all the markers were polymorphic. A total of 164 alleles were detected at 20 loci. The number of alleles per locus varied from 3 to 17 with an average of 8.2, and the expected heterozygosities of each locus ranged from 0.03 to 0.89 with an average of 0.64. Cross-species amplification was also conducted in Parastichopus parvimensis collected from the United States and Pathallus mollis collected from Peru. The result showed that 17 loci amplified Parastichopus parvimensis DNAs while only 4 loci could amplify Pathallus mollis DNAs. All of the polymorphic markers would be useful for future genetic breeding and the assessment of genetic variation within sea cucumbers.

  7. Occurrence of sea spider Endeis mollis Carpenter (Arthropoda: Pycnogonida on the test panels submerged in Gulf of Mannar, southeast coast of India

    S. Satheesh

    2012-06-01

    Full Text Available Sea spiders (Pycnogonids are exclusively marine arthropods with worldwide distribution. Pycnogonida remains one of the poorly investigated groups encountered in fouling communities. In the present study, distribution pycnogonid species Endeis mollis associated with the fouling community developed on test panels submerged at Kudankulam coast, Gulf of Mannar was studied for a period of two years. Throughout the period of investigation, Endeis mollis was observed on the test panels. A maximum of 55 individuals per square dm was observed during pre-monsoon season and a minimum of 9 individuals per square dm during monsoon season. Results of this study on seasonal distribution are of considerable interest because so little has been documented on the ecology of Pycnogonids in India.

  8. Verificação da atividade antibacteriana de sabonete líquido contendo extrato glicólico de Dimorphandra mollis Benth.

    KETYLIN FERNANDA MIGLIATO

    2009-12-01

    Full Text Available Dimorphandra mollis Benth., Compositae, falsobarbatimão, é utilizada topicamente como cicatrizante, adstringente e antimicrobiano. No presente estudo, verificou-se a atividade antibacteriana de sabonete líquido contendo extrato glicólico de D. mollis (EGD em diferentes concentrações (8, 15 e 20% e em diferentes pHs (6 e 8. Foram preparadas cinco formulações (F de sabonete: F1 - triclosan (0,1%, F2 - EGD (8%, F3 - EGD (15%, F4 - EGD (20% e F5 - sem conservante. Cascas de D. mollis foram secas em estufa de ar circulante e pulverizadas. Os extratos brutos foram preparados por turbo-extração utilizando-se etanol. Após filtração, os extratos foram concentrados em evaporador rotatório, liofilizados e ressuspendidos em propilenoglicol para a obtenção do extrato glicólico. A atividade antibacteriana foi verificada pelo método de difusão em ágar, empregando cilindros em placa. Placas contendo Staphylococcus aureus, Pseudomonas aeruginosa e Escherichia coli foram incubadas a 37ºC durante 24 horas. Após incubação, as leituras foram realizadas com paquímetro, observando-se o diâmetro do halo de inibição de crescimento bacteriano. Verificouse que o sabonete líquido contendo triclosan provocou inibição do crescimento bacteriano em ambos os pHs; já os sabonetes sem conservante e contendo EGD, independente da concentração e do pH empregados, não apresentaram atividade antibacteriana. Palavras-chave: Atividade antibacteriana. Sabonete líquido. Dimorphandra mollis Benth.

  9. The development of hyaline-cell cartilage in the head of the black molly, Poecilia sphenops. Evidence for secondary cartilage in a teleost.

    Benjamin, M

    1989-01-01

    The development of hyaline-cell cartilage attached to membrane (dentary, maxilla, nasal, lacrimal and cleithrum) and cartilage (basioccipital) bones has been studied in the viviparous black molly, Poecilia sphenops. Intramembranous ossification commences before the first appearance of hyaline cells. As hyaline-cell cartilage is densely cellular and as that attached to the dentary, maxilla and cleithrum develops from the periosteum of these membrane bones, it must be regarded as secondary cart...

  10. A new species of Desmodium (Leguminosae; tribe Desmodieae) from Thailand and Laos and two new distribution records and lectotypification for Thailand

    Saisorn, Witsanu; Balslev, Henrik; Chantaranothai, Pranom

    2016-01-01

    A new species of Desmodium (Leguminosae), D. brevipedicellatum from Thailand and Laos is described and illustrated. Two taxa, D. concinnum and D. laxiflorum subsp. lacei are reported as new for Thailand....

  11. Anti-Inflammatory Activity and Changes in Antioxidant Properties of Leaf and Stem Extracts from Vitex mollis Kunth during In Vitro Digestion

    Juan Alfredo Morales-Del-Rio

    2015-01-01

    Full Text Available Vitex mollis is used in traditional Mexican medicine for the treatment of some ailments. However, there are no studies on what happens to the anti-inflammatory activity or antioxidant properties and total phenolic content of leaves and stem extracts of Vitex mollis during the digestion process; hence, this is the aim of this work. Methanolic, acetonic, and hexanic extracts were obtained from both parts of the plant. Extract yields and anti-inflammatory activity (elastase inhibition were measured. Additionally, changes in antioxidant activity (DPPH and ABTS and total phenols content of plant extracts before and after in vitro digestion were determined. The highest elastase inhibition to prevent inflammation was presented by hexanic extracts (leaf = 94.63% and stem = 98.30%. On the other hand, the major extract yield (16.14%, antioxidant properties (ABTS = 98.51% and DPPH = 94.47% of inhibition, and total phenols (33.70 mg GAE/g of dried sample were showed by leaf methanolic extract. Finally, leaf and stem methanolic extracts presented an antioxidant activity increase of 35.25% and 27.22%, respectively, in comparison to their initial values after in vitro digestion process. All samples showed a decrease in total phenols at the end of the digestion. These results could be the basis to search for new therapeutic agents from Vitex mollis.

  12. Índices de oxidación en aceites de algunas leguminosas del desierto sonorense

    Vázquez-Moreno, L.

    2001-02-01

    Full Text Available The oxidation process of crude and refined oils from wild leguminous seeds: Prosopis juliflora (mezquite, Mimosa grahamii (gatuña, Acacia constricta, (vinorama Olneya tesota, (palo fierro Cercidium praecox (palo de brea and Parkinsonia aculeata (palo verde were evaluated during storage for 122 days, using corn and soybean oils as controls. Peroxide, Iodine, Acid and p-Anisidine values were determinated during 122 days of storage at room temperature. The wild leguminous raw oils showed results similar to those for the corn raw oil and lower than those of soybean raw oil. This behavior was similar for refinated oils. The rancid odor was detected after 5 days of storage in soybean oil and 40 days in vinorama oil, on the contrary, mezquite, palo verde and palo of brea oils presented this odor after 62 days, and for gatuña’s oil needed 135 days. Our results indicate that legume seed of Sonoran Desert could be a good alternative as source of oil.El proceso de oxidación fue evaluado durante el almacenamiento de los aceites crudos y refinados de las semillas de leguminosas silvestres: Prosopis juliflora (mezquite, Mimosa grahamii (gatuña, Acacia constricta (vinorama, Olneya tesota (palo fierro, Cercidium praecox (palo de brea y Parkinsonia aculeata (palo verde. Los aceites de maíz y soja fueron empleados como controles. Se determinó el índice de peróxido (I.P., de Yodo (I.I., de acidez (I.A, y valor de p-Anisidina (p-A durante 122 días de almacenamiento a temperatura ambiente. Los aceites crudos de leguminosas silvestres mostraron valores de estos índices similares a los del aceite de maíz crudo y menores que los del aceite de soja crudo. Este comportamiento también fue observado para los aceites refinados. El olor a rancio se presentó en el aceite de soja a los 5 días de almacenamiento, en el de vinorama a los 40 días, en el de mezquite, palo verde y palo de brea a los 62 días y en el de gatuña a los 135 días. Los valores

  13. A Public Trial De Novo

    Vedel, Jane Bjørn; Gad, Christopher

    2011-01-01

    This article addresses the concept of “industrial interests” and examines its role in a topical controversy about a large research grant from a private foundation, the Novo Nordisk Foundation, to the University of Copenhagen. The authors suggest that the debate took the form of a “public trial” w.......” The article ends with a discussion of some implications of the analysis, including that policy making, academic research, and public debates might benefit from more detailed accounts of interests and stakes.......This article addresses the concept of “industrial interests” and examines its role in a topical controversy about a large research grant from a private foundation, the Novo Nordisk Foundation, to the University of Copenhagen. The authors suggest that the debate took the form of a “public trial......” where the grant and close(r) intermingling between industry and public research was prosecuted and defended. First, the authors address how the grant was framed in the media. Second, they redescribe the case by introducing new “evidence” that, because of this framing, did not reach “the court...

  14. de novo computational enzyme design.

    Zanghellini, Alexandre

    2014-10-01

    Recent advances in systems and synthetic biology as well as metabolic engineering are poised to transform industrial biotechnology by allowing us to design cell factories for the sustainable production of valuable fuels and chemicals. To deliver on their promises, such cell factories, as much as their brick-and-mortar counterparts, will require appropriate catalysts, especially for classes of reactions that are not known to be catalyzed by enzymes in natural organisms. A recently developed methodology, de novo computational enzyme design can be used to create enzymes catalyzing novel reactions. Here we review the different classes of chemical reactions for which active protein catalysts have been designed as well as the results of detailed biochemical and structural characterization studies. We also discuss how combining de novo computational enzyme design with more traditional protein engineering techniques can alleviate the shortcomings of state-of-the-art computational design techniques and create novel enzymes with catalytic proficiencies on par with natural enzymes. Copyright © 2014 Elsevier Ltd. All rights reserved.

  15. Preliminary Screening a Potential AChE Inhibitor in Thai Golden Shower (Leguminosae mimosoideae Extracts

    Jakkaphun Nanuam

    2013-07-01

    Full Text Available Pesticides are used to control pests of agriculture products in many countries including Thailand. Since they can exert harmful effects not only on target pests but also on other useful organisms, alternative agents are investigated. We studied the capacity of the Thai golden shower (Leguminosae mimosoideae extracts (root and pod to inhibit acetyl cholinestarese (AChE in the golden apple snail (Pomacea canaliculata as a pest representative. The results showed that the percentage of AChE inhibition increased with increasing in exposure times. The inhibition expressed the same trend in both male and female apple snails. AChE inhibition was higher in extracts from root than from pod. Chromatography-Mass Spectrometer (GC-MS chromatograms demonstrated anthraquinone, an AChE inhibitor, in extracts of golden shower. Our data indicate that a potential AChE inhibitor tends to accumulate more in the root part than in the pod.

  16. Sesquiterpenes and other constituents from leaves of Pterodon pubescens Benth (Leguminosae)

    Miranda, Mayker Lazaro Dantas; Garcez, Fernanda Rodrigues; Garcez, Walmir Silva

    2014-01-01

    In addition to β-sitosterol, stigmasterol, phaeophitin A, luteolin, kaempferol, quercetin, (+)-catechin, quercetin-3-O-α-L-rhamnopyranoside, rutin, and p-hydroxy-benzoic acid, six known sesquiterpenes, namely (rel)-2β,6β-epoxy-5β-hydroxy-isodaucane, oplopanone, 1β,6α-dihydroxy-4(15)-eudesmene, caryophyllene oxide, α-cadinol, and spathulenol, were isolated from the leaves of Pterodon pubescens (Leguminosae) growing in the Cerrado of Mato Grosso do Sul, Brazil. The (rel)-2β,6β-epoxy-5β-hydroxy-isodaucane corresponds to the correct structure of homalomenol D. The sesquiterpene oplopanone, which bears a modified cadinane skeleton, is being reported for the first time in this genus. The structures of the compounds were determined on the basis of spectral data (MS, IR, and NMR-1D and 2D) and subsequent comparison with data reported in the literature. (author)

  17. Sesquiterpenos e outros constituintes das folhas de Pterodon pubescens Benth (Leguminosae

    Mayker Lazaro Dantas Miranda

    2014-06-01

    Full Text Available In addition to β-sitosterol, stigmasterol, phaeophitin A, luteolin, kaempferol, quercetin, (+-catechin, quercetin-3-O-α-L-rhamnopyranoside, rutin, and p-hydroxy-benzoic acid, six known sesquiterpenes, namely (rel-2β,6β-epoxy-5β-hydroxy-isodaucane, oplopanone, 1β,6α-dihydroxy-4(15-eudesmene, caryophyllene oxide, α-cadinol, and spathulenol, were isolated from the leaves of Pterodon pubescens (Leguminosae growing in the Cerrado of Mato Grosso do Sul, Brazil. The (rel-2β,6β-epoxy-5β-hydroxy-isodaucane corresponds to the correct structure of homalomenol D. The sesquiterpene oplopanone, which bears a modified cadinane skeleton, is being reported for the first time in this genus. The structures of the compounds were determined on the basis of spectral data (MS, IR, and NMR-1D and 2D and subsequent comparison with data reported in the literature.

  18. Las leguminosas grano en la agricultura española y europea

    González-Bernal, María José

    2016-06-01

    Full Text Available Grain legume cultivation is continuously decreasing in Spain in spite of the long tradition of their cultivation and consumption and their well-known environmental benefits by improving soil fertility. Grain legumes have been replaced in rotations by other crops that have adapted more quickly to technological progress and are more profitable for farmers in the short term. A similar change is taking place in Europe. This generates two major dependencies that can only be alleviated by increasing legume cultivation. On the one hand, Europe faces an increasing dependency on nitrogen fertilizers, using up to 10 million tons yearly, of which about 80% are imported. In addition to this, fertilizer production uses large amounts of energy, being highly dependent on natural gas, of which the EU imports 60% of its requirements. On the other hand, EU countries import 70% of their requirements as vegetable protein. In Spain, we import 4.7 million tons of grain legumes yearly, most of which is soybean (95% of the total. The decline in human consumption does not justify the reduction in cultivation, as we import 85% of the dried beans, 60% of the lentils and 75% of the chickpeas consumed in Spain. This dependency on imports, particularly on soybean, poses a serious threat to the economy as it makes the raw feed industry, and therefore most of the meat industry, vulnerable to fluctuations in the world soybean price.A pesar de la larga tradición de cultivo y consumo de leguminosas en España y de sus conocidos beneficios medioambientales mejorando la fertilidad de los suelos, su cultivo ha disminuido constantemente en los últimos 50 años siendo reemplazadas por otros cultivos que se han adaptado mejor a los avances tecnológicos y resultan más rentables al agricultor. El consumo de legumbres ha descendido en España notablemente desde los 13 kg/persona/año en la década de los 60, hasta los poco más de 3 en la actualidad, pero aun así, importamos hoy

  19. Red Sea Suberea mollis Sponge Extract Protects against CCl4-Induced Acute Liver Injury in Rats via an Antioxidant Mechanism

    Aymn T. Abbas

    2014-01-01

    Full Text Available Recent studies have demonstrated that marine sponges and their active constituents exhibited several potential medical applications. This study aimed to evaluate the possible hepatoprotective role as well as the antioxidant effect of the Red Sea Suberea mollis sponge extract (SMSE on carbon tetrachloride- (CCl4- induced acute liver injury in rats. In vitro antioxidant activity of SMSE was evaluated by 2,2-diphenyl-1-picryl-hydrazyl-hydrate (DPPH assay. Rats were orally administered three different concentrations (100, 200, and 400 mg/kg of SMSE and silymarin (100 mg/kg along with CCl4 (1 mL/kg, i.p., every 72 hr for 14 days. Plasma aspartate aminotransferase (AST, alanine aminotransferase (ALT, alkaline phosphatase (ALP, and total bilirubin were measured. Hepatic malondialdehyde (MDA, reduced glutathione (GSH, nitric oxide (NO, superoxide dismutase (SOD, glutathione peroxidase (GPx, and catalase (CAT were also measured. Liver specimens were histopathologically examined. SMSE showed strong scavenging activity against free radicals in DPPH assay. SMSE significantly reduced liver enzyme activities. Moreover, SMSE significantly reduced hepatic MDA formation. In addition, SMSE restored GSH, NO, SOD, GPx, and CAT. The histopathological results confirmed these findings. The results of this study suggested a potent protective effect of the SMSE against CCl4-induced hepatic injury. This may be due to its antioxidant and radical scavenging activity.

  20. Otolith morphology and hearing abilities in cave- and surface-dwelling ecotypes of the Atlantic molly, Poecilia mexicana (Teleostei: Poeciliidae)

    Schulz-Mirbach, Tanja; Ladich, Friedrich; Riesch, Rüdiger; Plath, Martin

    2010-01-01

    Cave fish have rarely been investigated with regard to their inner ear morphology, hearing abilities, and acoustic communication. Based on a previous study that revealed morphological differences in the saccular otolith between a cave and two surface populations of Poecilia mexicana, we checked for additional differences in utricular and lagenar otoliths and tested whether different populations have similar hearing sensitivities. We found pronounced differences in the shape of all three otoliths. Otoliths of the saccule and lagena from cave fish differed from those of surface fish in the features of the face oriented towards the sensory epithelium. In addition, otoliths of the utricle and lagena were significantly heavier in cave fish. Auditory sensitivities were measured between 100 and 1500 Hz, utilizing the auditory evoked potential recording technique. We found similar hearing abilities in cave and surface fish, with greatest sensitivity between 200 and 300 Hz. An acoustic survey revealed that neither ecotype produced species-specific sounds. Our data indicate that cave dwelling altered the otolith morphology in Atlantic mollies, probably due to metabolic differences. Different otolith morphology, however, did not affect general auditory sensitivity or acoustic behavior. PMID:20430090

  1. Motivations for Using MDMA (Ecstasy/Molly) among African Americans: Implications for Prevention and Harm-Reduction Programs.

    Rigg, Khary K

    2017-01-01

    Despite the growing popularity of MDMA (ecstasy/molly) among African Americans, their motives for using the drug are still largely unknown. The purpose of this study was to identify and describe the most salient motivations for using MDMA among this understudied population. In-depth interviews (n = 15) were conducted with a sample of African American young adults in Southwest Florida between August 2014 and November 2015. The primary motivations for using MDMA included: (1) altering the effects of marijuana and alcohol; (2) lasting longer sexually; (3) enhancing sexual pleasure; and (4) facilitating "freaky" sexual experiences. This is the first study to directly examine MDMA motivations specifically among African American drug users, and findings shed light on why some African Americans use MDMA. A better understanding of why African Americans use this drug should help to inform prevention and harm-reduction efforts. Study findings show the need for health messages that include the potential consequences of mixing MDMA with other drugs, and engaging in high-risk sexual behaviors after taking MDMA. These data contrast with motivations (e.g., introspection, self-enlightenment, getting into the music) commonly reported among groups of largely White MDMA users, suggesting that interventions tailored specifically for African American users are needed.

  2. Distribution of N-methyl-N-nitrosourea in the Amazon molly, Poecilla formosa (Girard), after a single intraperitoneal injection

    Woodhead, A.D.; Cao, E.H.; Melgar, T.

    1985-01-01

    The distribution and accumulation of labelled N-methyl-N nitrosourea (MNU) has been described in the Amazon molly following intraperitoneal injection. Two hours after injection the label was present throughout the body, with enhanced deposition in the macrophages of the atrium of the heart, the kidney and the spleen; about half of the liver cells were labelled. The compound was taken up by the cells of the renal excretory tubules, and certain cells in the optic tectum and corpus cerebelli of the brain. By 6 h, the distribution picture had changed radically. There was little label remaining, except in a few macrophages in the heart and kidneys, and in the nuclei of the renal tubule cells. There was a slight decrease in the numbers of cells in the brain that were labelled, but the amount of material that the individual cells had accumulated had increased. By 48 h there was further loss and only brain cells were labelled. Our findings indicate preferential accumulation of MNU in undifferentiated, pluripotential cells of the optic tectum and corpus cerebelli. 28 references, 3 figures, 1 table.

  3. Taxonomic value of foliar characters in Dahlstedtia Malme: Leguminosae, Papilionoideae, Millettieae Valor taxonômico de caracteres foliares em Dahlstedtia Malme: Leguminosae, Papilionoideae, Millettieae

    Simone de Pádua Teixeira

    2006-06-01

    Full Text Available Dahlstedtia Malme (Leguminosae is a neotropical genus, native to the Brazilian Atlantic Forest, and comprises two species, D. pinnata (Benth. Malme and D. pentaphylla (Taub. Burk., although it has been considered a monotypic genus by some authors. Leaf anatomy was compared to verify the presence of anatomical characters to help delimit species. Foliar primordium, leaflet, petiolule, petiole and pulvinus were collected from cultivated plants (Campinas, SP, Brazil and from natural populations (Picinguaba, Ubatuba and Caraguatatuba, SP, Brazil - D. pinnata; Antonina, PR, Brazil - D. pentaphylla. Studies on leaflet surface assessment (Scanning Electron Microscopy, as well as histology and venation analyses were carried out of dehydrated, fresh and fixed material from two species. Leaflet material was macerated for stomatal counts. Histological sections, obtained by free-hand cut or microtome, were stained with Toluidine Blue, Safranin/Alcian Blue, Ferric Chloride, Acid Phloroglucin. Secretory cavities are present in the lamina, petiolule, petiole, pulvinus and leaf primordium in D. pentaphylla, but not in D. pinnata, and can be considered an important character for species diagnosis. Other leaf characters were uninformative in delimiting Dahlstedtia species. There is cambial activity in the petiolule, petiole and pulvinus. This study, associated with other available data, supports the recognition of two species in Dahlstedtia.Dahlstedtia Malme (Leguminosae é um gênero neotropical, com duas espécies reconhecidas, D. pinnata (Benth. Malme e D. pentaphylla (Taub. Burk., embora tenha sido considerado monotípico por alguns autores. Seus representantes ocorrem na Floresta Atlântica, nos Estados do Sul e Sudeste do Brasil. Neste trabalho, realizamos um estudo comparativo da anatomia foliar, para verificar a presença de caracteres que possam auxiliar a identificação das espécies. Primórdio foliar, lâmina foliar, peciólulo, pecíolo e pulvino

  4. Gilbertiodendron grandistipulatum (Leguminosae-Caesalpinioideae), a singular species from West Central Africa and new record for Congo (Brazzaville)

    De La Estrella, Manuel; Devesa, Juan Antonio

    2014-01-01

    Gilbertiodendron (Leguminosae-Caesalpinioideae) is an endemic tropical African genus of ca. 30 species, most of which are trees of primary forest. The highest concentration of species and morphological variation is found in the Guineo-Congolian region, particularly in Gabon. One of those species is G. grandistipulatum, which is easily recognized by its stipules (up to 18 cm long) and flowers (adaxial petal up to 12.5 × 14 cm). The taxonomy, habitat and distribution of G. grandistipultaum are ...

  5. Fagaceae tree species allocate higher fraction of nitrogen to photosynthetic apparatus than Leguminosae in Jianfengling tropical montane rain forest, China.

    Tang, Jingchao; Cheng, Ruimei; Shi, Zuomin; Xu, Gexi; Liu, Shirong; Centritto, Mauro

    2018-01-01

    Variation in photosynthetic-nitrogen use efficiency (PNUE) is generally affected by several factors such as leaf nitrogen allocation and leaf diffusional conductances to CO2, although it is still unclear which factors significantly affect PNUE in tropical montane rain forest trees. In this study, comparison of PNUE, photosynthetic capacity, leaf nitrogen allocation, and diffusional conductances to CO2 between five Fagaceae tree species and five Leguminosae tree species were analyzed in Jianfengling tropical montane rain forest, Hainan Island, China. The result showed that PNUE of Fagaceae was significantly higher than that of Leguminosae (+35.5%), attributed to lower leaf nitrogen content per area (Narea, -29.4%). The difference in nitrogen allocation was the main biochemical factor that influenced interspecific variation in PNUE of these tree species. Fagaceae species allocated a higher fraction of leaf nitrogen to the photosynthetic apparatus (PP, +43.8%), especially to Rubisco (PR, +50.0%) and bioenergetics (PB +33.3%) in comparison with Leguminosae species. Leaf mass per area (LMA) of Leguminosae species was lower than that of Fagaceae species (-15.4%). While there was no significant difference shown for mesophyll conductance (gm), Fagaceae tree species may have greater chloroplast to total leaf surface area ratios and that offset the action of thicker cell walls on gm. Furthermore, weak negative relationship between nitrogen allocation in cell walls and in Rubisco was found for Castanopsis hystrix, Cyclobalanopsis phanera and Cy. patelliformis, which might imply that nitrogen in the leaves was insufficient for both Rubisco and cell walls. In summary, our study concluded that higher PNUE might contribute to the dominance of most Fagaceae tree species in Jianfengling tropical montane rain forest.

  6. Fagaceae tree species allocate higher fraction of nitrogen to photosynthetic apparatus than Leguminosae in Jianfengling tropical montane rain forest, China

    Cheng, Ruimei; Shi, Zuomin; Xu, Gexi; Liu, Shirong; Centritto, Mauro

    2018-01-01

    Variation in photosynthetic-nitrogen use efficiency (PNUE) is generally affected by several factors such as leaf nitrogen allocation and leaf diffusional conductances to CO2, although it is still unclear which factors significantly affect PNUE in tropical montane rain forest trees. In this study, comparison of PNUE, photosynthetic capacity, leaf nitrogen allocation, and diffusional conductances to CO2 between five Fagaceae tree species and five Leguminosae tree species were analyzed in Jianfengling tropical montane rain forest, Hainan Island, China. The result showed that PNUE of Fagaceae was significantly higher than that of Leguminosae (+35.5%), attributed to lower leaf nitrogen content per area (Narea, –29.4%). The difference in nitrogen allocation was the main biochemical factor that influenced interspecific variation in PNUE of these tree species. Fagaceae species allocated a higher fraction of leaf nitrogen to the photosynthetic apparatus (PP, +43.8%), especially to Rubisco (PR, +50.0%) and bioenergetics (PB +33.3%) in comparison with Leguminosae species. Leaf mass per area (LMA) of Leguminosae species was lower than that of Fagaceae species (-15.4%). While there was no significant difference shown for mesophyll conductance (gm), Fagaceae tree species may have greater chloroplast to total leaf surface area ratios and that offset the action of thicker cell walls on gm. Furthermore, weak negative relationship between nitrogen allocation in cell walls and in Rubisco was found for Castanopsis hystrix, Cyclobalanopsis phanera and Cy. patelliformis, which might imply that nitrogen in the leaves was insufficient for both Rubisco and cell walls. In summary, our study concluded that higher PNUE might contribute to the dominance of most Fagaceae tree species in Jianfengling tropical montane rain forest. PMID:29390007

  7. UniNovo: a universal tool for de novo peptide sequencing.

    Jeong, Kyowon; Kim, Sangtae; Pevzner, Pavel A

    2013-08-15

    Mass spectrometry (MS) instruments and experimental protocols are rapidly advancing, but de novo peptide sequencing algorithms to analyze tandem mass (MS/MS) spectra are lagging behind. Although existing de novo sequencing tools perform well on certain types of spectra [e.g. Collision Induced Dissociation (CID) spectra of tryptic peptides], their performance often deteriorates on other types of spectra, such as Electron Transfer Dissociation (ETD), Higher-energy Collisional Dissociation (HCD) spectra or spectra of non-tryptic digests. Thus, rather than developing a new algorithm for each type of spectra, we develop a universal de novo sequencing algorithm called UniNovo that works well for all types of spectra or even for spectral pairs (e.g. CID/ETD spectral pairs). UniNovo uses an improved scoring function that captures the dependences between different ion types, where such dependencies are learned automatically using a modified offset frequency function. The performance of UniNovo is compared with PepNovo+, PEAKS and pNovo using various types of spectra. The results show that the performance of UniNovo is superior to other tools for ETD spectra and superior or comparable with others for CID and HCD spectra. UniNovo also estimates the probability that each reported reconstruction is correct, using simple statistics that are readily obtained from a small training dataset. We demonstrate that the estimation is accurate for all tested types of spectra (including CID, HCD, ETD, CID/ETD and HCD/ETD spectra of trypsin, LysC or AspN digested peptides). UniNovo is implemented in JAVA and tested on Windows, Ubuntu and OS X machines. UniNovo is available at http://proteomics.ucsd.edu/Software/UniNovo.html along with the manual.

  8. Historia de la investigación en la simbiosis leguminosa-bacteria: una perspectiva didáctica

    Ramírez-Bahena, Marta Helena

    2016-06-01

    Full Text Available After cereals, legumes constitute the second most important family of crops for human and animal consumption. However, in contrast to the former, legumes are capable of growing in arid soils of low fertility, due to their ability to establish symbiotic associations with soil bacteria called rhizobia. These microorganisms form special organs in the roots of legumes called nodules, where atmospheric dinitrogen (N2 is transformed into ammonium that is exported to the plant for growth. Since their discovery in legume nodules until today, knowledge of the bacteria capable of establishing symbiosis with these plants has advanced in many aspects. Especially, advances in molecular techniques for bacterial identification and access to unexplored places have confirmed that the interaction of legumes with rhizobia is older, and that N2-fixing bacteria are more abundant and diverse, than considered previously. Here, we attempt to relate the history of an association whose development is key in the history of mankind as we know it now.Después de los cereales, las leguminosas constituyen la segunda familia en importancia para la alimentación humana y animal. Sin embargo, en contraste con ellos, las leguminosas son capaces de crecer en suelos áridos, de escasa fertilidad, lo que se debe a su capacidad para establecer asociaciones simbióticas con bacterias del suelo llamadas rhizobia. Estos microorganismos forman unos órganos especiales en las raíces de las leguminosas, los nódulos, donde el dinitrógeno (N2 atmosférico se transforma en amonio que se exporta a la planta para su crecimiento. Desde su descubrimiento en los nódulos de las leguminosas hasta nuestros días, el conocimiento de las bacterias capaces de establecer simbiosis con estas plantas ha avanzado en múltiples aspectos. Sobre todo, los avances en las técnicas moleculares de identificación bacteriana y el acceso a lugares inexplorados ha permitido confirmar que la interacción de las

  9. A study of the fatty acid and tocochromanol patterns of some Fabaceae (Leguminosae plants from Turkey I

    Sahim, Ahmet

    2004-12-01

    Full Text Available In this study, the fatty acid, tocopherol, tocotrienol and plastochromanol-8 contents of some selected Fabaceae (Leguminosae species belonging to different genera (Colutea, Vicia, Lathyrus, Gonocytisus, Lupinus, Hedysarum, Onobrychis, Trigonella from Turkey were determined by using GLC and HPLC techniques. Some of the studied species are endemic to Turkey. The seed oils of different Leguminous taxa contained linoleic, oleic and linolenic acids as their major components. The ratios of these fatty acids in the Leguminous genera were found to be highly variable. Palmitic and stearic acids are the major saturated fatty acids in the seed oils. Vicia and Onobrychis patterns showed high similarity in means of qualitative fatty acid concentration. The tocopherol and tocochromanol patterns of the seed oils were also found to be highly variable among the genera investigated here. The total tocopherols was higher than the total tocotrienols. Alpha and gamma tocopherols were also the highest tocopherols present in the whole species. Beta, gamma and delta-tocotrienols were not found in most of the studied leguminous patterns. The results are discussed in view of renewable sources and chemotaxonomy.En este estudio, los contenidos en ácidos grasos, tocoferoles, tocotrienoles y plastocromanol-8 de algunas especies seleccionadas de Fabaceae (Leguminosae, pertenecientes a diferentes géneros (Colutea, Vicia, Lathyrus, Gonocytisus, Lupinus, Hedysarum, Onobrychis, Trigonella de Turquía, fueron determinadas usando técnicas de GLC y HPLC. Algunas de las especies estudiadas son endémicas de Turquía. Los aceites de semillas de los diferentes taxones de leguminosas contenían los ácidos linoleico, oleico y linolénico como principales componentes. Las proporciones de estos ácidos grasos fueron muy variables entre los géneros de leguminosas. Los ácidos palmítico y esteárico son los principales ácidos grasos saturados en los aceites de semillas. Los patrones

  10. Efeito da cobertura viva com leguminosas herbáceas perenes na agregação de um argissolo

    A. Perin

    2002-09-01

    Full Text Available O presente trabalho foi desenvolvido na área do Campo Experimental da Embrapa Agrobiologia, Seropédica (RJ, com o objetivo de avaliar a morfologia e a distribuição de raízes de algumas leguminosas herbáceas perenes; os efeitos da cobertura viva no teor de carbono orgânico, e a agregação de um Argissolo Vermelho-Amarelo distrófico, medida pela estabilidade dos agregados em água. O delineamento experimental adotado foi o de blocos casualizados, com três repetições. Os tratamentos consistiram de três diferentes espécies de leguminosas herbáceas perenes e um tratamento-controle sem cobertura viva (capinado. As leguminosas utilizadas foram amendoim forrageiro (Arachis pintoi, cudzu tropical(Pueraria phaseoloides e siratro (Macroptilium Atropurpureum. Para a estabilidade de agregados, as profundidades de amostragem foram 0-5 e 5-10 cm, enquanto, para a morfologia e distribuição radicular, as avaliações consistiram das profundidades 0-5, 5-10, 10-20 e 20-40 cm. As coberturas com as leguminosas amendoim forrageiro e cudzu tropical propiciaram os maiores valores percentuais na classe de agregados > 2,00 mm, em média 38 % superiores aos obtidos na área capinada. Os valores do diâmetro médio ponderado (DMP dos agregados no solo com cobertura de leguminosas foram superiores aos da área capinada para ambas as camadas, o que demonstra o efeito favorável das coberturas vivas na estabilização dos agregados do solo. A cobertura viva de amendoim forrageiro proporcionou incremento no teor de carbono orgânico no solo. Quanto aos atributos morfológicos das raízes, verificou-se que o amendoim forrageiro apresentou raio radicular intermediário entre as demais espécies e área e massa radicular maiores, o que auxiliou na interpretação do efeito positivo da cobertura viva com essa espécie na agregação do solo.

  11. Frozen F1's amidst a masterpiece of nature: new insights into the rare hybrid origin of gynogenesis in the Amazon molly (Poecilia formosa).

    Rogers, S M; Vamosi, S M

    2010-12-01

    All-female 'species' of fish have been shown to be great models in ecological and evolutionary studies because of the insights they can provide into the origin and evolution of asexuality, the ecology of hybrids, associations between genotype and environment, and the maintenance of sex. Gynogenetic organisms that evolved from sexual ancestors, and combine the disadvantageous traits from sexuality and asexuality, have long baffled evolutionary biologists trying to understand their origin and persistence with their sympatric sexual counterparts. In this issue, a new study using an integrated molecular phylogenetic and classical genetic approach has uncovered compelling evidence regarding the obscure asexual origin of the Amazon molly, Poecilia formosa. By performing an extensive phylogeographic analysis, Stöck et al. (2010) provide evidence that the Amazon molly arose only once within its history, with monophyly being strongly supported by mitochondrial DNA and microsatellite analyses. This result, combined with an elaborate failed attempt to resynthesize the lineage, suggests that vertebrate gynogens such as the Amazon molly are not rare because they are at a disadvantage to their sexual counterparts, but because the genomic conditions under which they arise are rare. Organisms that apparently combine the disadvantages of both sexuality and asexuality remain difficult to understand from both an ecological and an evolutionary perspective, and Stöck et al. (2010) highlight several outstanding important questions. Nonetheless, given that we now have a better knowledge of the origin and history of this unique 'species', this should allow researchers to better understand how these frozen F1's can persist amidst the masterpiece of nature. © 2010 Blackwell Publishing Ltd.

  12. Aspects of reproductive ecology and benthic-pelagic coupling in the sub-antarctic sea cucumber Pseudostichopus mollis (Theel)

    Morgan, Andrew; Neal, Lance

    2012-07-01

    For deeper regions of the continental shelf environmental cues entraining reproduction in echinoderms are often absent, which contributes to adoption of continuous reproduction, having larger eggs, and a lecithotrophic mode of larval development. In the present study the sub-Antarctic sea cucumber Pseudostichopus mollis from the family Synallactidae was obtained during June (winter) and September (spring) from a depth of approximately 300 m north of the Auckland Islands in an area abundant in biogenic sediments. Samples were processed for body indices and gonad development. Features characteristic of non-continuous reproduction were exhibited. Although a larger egg size was found (212±14 μm), two distinct winter cohorts of oocytes occurred (41-81 and 161-201 μm) and body wall weight fluctuations (7.6% increase in males and 27.5% reduction in females) coincided with changes in gonad indices between sample dates. For males gonad as a proportion of body wall weight decreased from 3.31±0.9 to 2.11±0.37% and for females it increased from 1.59±0.28 to 2.5±0.30%. For both sample dates the gonad of males maintained mature spermatozoa whereas female gonad shifted from mainly recovery and growth of oocytes to growth and advanced growth of mature oocytes. In habitats with low or variable food availability intermittent reproduction is predicted as resources are too low for a high reproductive effort and too erratic for synchrony. A pattern of reproduction where fluctuations in seasonal organic input into an accumulated benthic food source initiates and synchronises gametogenesis for future spawning is proposed.

  13. Leguminosas arbóreas introduzidas em pastagem Performance of leguminous trees introduced into pastures

    Paulo Francisco Dias

    2007-01-01

    Full Text Available O objetivo deste trabalho foi analisar, por meio de métodos de análise de variância multivariada, o comportamento de 16 espécies de leguminosas arbóreas, introduzidas em pastagem estabelecida de Brachiaria decumbens, a partir de mudas pequenas e em presença de animais, em quatro épocas do ano, em Seropédica, RJ. Nove variáveis relacionadas ao comprimento e ao número de brotos das mudas, antes e após o pastejo dos animais, foram utilizadas nas avaliações. As diferenças estatísticas entre as médias da variável canônica principal, pelo teste de Scott-Knott, indicaram a formação de quatro agrupamentos, tendo-se destacado o grupo formado pelos tratamentos Mimosa tenuiflora nas 3ª e 4ª avaliações. Diferenças entre as médias dos tratamentos, para cada variável, calculadas por meio de intervalos de confiança de Bonferroni, mostraram que o maior comprimento e o maior número de brotos na muda, após o pastejo, foram encontrados na M. tenuiflora. Esta leguminosa é indicada para ser introduzida, com maior probabilidade de sucesso, nas pastagens de B. decumbens na região, sem a proteção das mudas e em presença de gado.The objective of this work was to analyse, by means of multivariate variance analysis, the behaviour of 16 leguminous tree species introduced into pastures of Brachiaria decumbens from unprotected young plants and under grazing, in four periods of the year, in Seropédica, RJ, Brazil. Nine variables, related to length and to number of sprouting, before and after animal grazing, were used for the evaluation. The statistical difference of the means of the principal canonical variable, calculated by the Scott-Knott test, indicated the formation of four groups, and the Mimosa tenuiflora group stood out at the 3rd and 4th evaluations. Difference among treatment means for each variable, calculated by Bonferroni confidence intervals, showed that the greatest sprouting length and the highest number of sprouting, after

  14. Morphology of seeds and seedlings of four species of Vigna Savi (Leguminosae, Phaseolinae

    Fabiana Soledad Ojeda

    2013-09-01

    Full Text Available Four neotropical species of Vigna Savi (Leguminosae, Phaseolinae have potential value as forage crops or ornamentals and could be cultivated in tropical or subtropical areas, even on floodplains. In order to obtain useful data for their culture and taxonomy, the seed morphology, germination pattern (hypogeal or epigeal and seedling development were studied. The studied species belong to different sections of the genus: V. adenantha (G.F.W. Meyer Maréchal, Mascherpa & Stainier (Sect. Leptospron; V. candida (Vell. Maréchal, Mascherpa & Stainier (Sect. Sigmoidotropis; V. caracalla (L. Verdc. (Sect. Caracallae and V. luteola (Jacq. Benth. (Sect. Vigna. The seeds were collected during fieldwork conducted in northwestern and northeastern Argentina. The qualitative and quantitative characters of the seeds were registered, after which they were sown. The development of the emerged seedlings was followed, first in a greenhouse and thereafter in open field. We recorded the type of germination, the thigmotropic movements of the hypocotyl and of the stem, seedling architecture and plant longevity. These traits allowed us to differentiate the species and construct an identification key that could be useful for agronomic or floricultural purposes. The data obtained partially support the current taxonomic treatment of the genus.

  15. Ecological interpretations of the leaf anatomy of amphibious species of Aeschynomene L. (Leguminosae - Papilionoideae

    FM Leme

    Full Text Available We present the leaf anatomy of seven amphibious species of Aeschynomene L. (Papilionoideae, Leguminosae, interpreting their structures and ecological functions, and also, providing information on which their taxonomy can be based, especially of morphologically similar species. We evaluated Aeschynomene americana, A. ciliata, A. evenia, A. denticulata, A. fluminensis, A. rudis and A. sensitiva. The anatomy corroborates the separation of the series Americanae, Fluminenses, Indicae and Sensitivae, with the shape of the petiole, types of trichomes and quantity of vascular units in the petiole as main characteristics to delimit the species. The petiole shape varies from cylindric in A. americana, A. sensitiva and A. fluminensis, to triangular in A. evenia and quadrangular in A. rudis, A. denticulata and A. ciliata. We observed four types of trichomes: hydathode trichome, long conic trichome, short conic trichome and bulb-based trichome. The hydathode trichome was the most common, except for A. americana and A. fluminensis. Species with higher affinity with water share similar adaptive characteristics, including hydathode trichomes described for the first time for the genus. This article adds unseen descriptions for the genus and on the adaptation factors of the amphibious species.

  16. Ecological interpretations of the leaf anatomy of amphibious species of Aeschynomene L. (Leguminosae - Papilionoideae).

    Leme, F M; Scremin-Dias, E

    2014-02-01

    We present the leaf anatomy of seven amphibious species of Aeschynomene L. (Papilionoideae, Leguminosae), interpreting their structures and ecological functions, and also, providing information on which their taxonomy can be based, especially of morphologically similar species. We evaluated Aeschynomene americana, A. ciliata, A. evenia, A. denticulata, A. fluminensis, A. rudis and A. sensitiva. The anatomy corroborates the separation of the series Americanae, Fluminenses, Indicae and Sensitivae, with the shape of the petiole, types of trichomes and quantity of vascular units in the petiole as main characteristics to delimit the species. The petiole shape varies from cylindric in A. americana, A. sensitiva and A. fluminensis, to triangular in A. evenia and quadrangular in A. rudis, A. denticulata and A. ciliata. We observed four types of trichomes: hydathode trichome, long conic trichome, short conic trichome and bulb-based trichome. The hydathode trichome was the most common, except for A. americana and A. fluminensis. Species with higher affinity with water share similar adaptive characteristics, including hydathode trichomes described for the first time for the genus. This article adds unseen descriptions for the genus and on the adaptation factors of the amphibious species.

  17. (Glossoscolecidae y Acanthodrilidae y leguminosas (Arachis pintoi en un suelo de traspatio

    Esperanza Huerta

    2007-01-01

    Full Text Available En el sureste de la República Mexicana, en el trópico húmedo, se llevó a cabo un estudio en un cultivo de traspatio (huerto familiar con el fin de aumentar la fertilidad del suelo mediante la reproducción e inoculación de individuos de las especies Glossoscolecidae sp y Dichogaster saliens (oligochaeta las cuales tuvieron la mayor tasa de crecimiento diario (3 mg día-1 en sustratos con 1.5 % Mucuna pruriens var. utilis (leguminosa. Cuatro tratamientos con seis repeticiones de 3 x 2 m cada una fueron instalados en el huerto familiar. El contenido de materia orgánica (5.45 ± 1.6%, nitrógeno total (0.27 ± 0.05%, fósforo disponible (40.6 ± 22.5 mg kg-1 y potasio (1.05 ± 0.88 mg kg-1 fueron significativamente superiores (p < 0.05 en aquellas unidades experimentales con lombrices (27 gm-2 en conjunto con Arachis pintoi.

  18. Morphological analyses suggest a new taxonomic circumscription for Hymenaea courbaril L. (Leguminosae, Caesalpinioideae).

    Souza, Isys Mascarenhas; Funch, Ligia Silveira; de Queiroz, Luciano Paganucci

    2014-01-01

    Hymenaea is a genus of the Resin-producing Clade of the tribe Detarieae (Leguminosae: Caesalpinioideae) with 14 species. Hymenaea courbaril is the most widespread species of the genus, ranging from southern Mexico to southeastern Brazil. As currently circumscribed, Hymenaea courbaril is a polytypic species with six varieties: var. altissima, var. courbaril, var. longifolia, var. stilbocarpa, var. subsessilis, and var. villosa. These varieties are distinguishable mostly by traits related to leaflet shape and indumentation, and calyx indumentation. We carried out morphometric analyses of 14 quantitative (continuous) leaf characters in order to assess the taxonomy of Hymenaea courbaril under the Unified Species Concept framework. Cluster analysis used the Unweighted Pair Group Method with Arithmetic Mean (UPGMA) based on Bray-Curtis dissimilarity matrices. Principal Component Analyses (PCA) were carried out based on the same morphometric matrix. Two sets of Analyses of Similarity and Non Parametric Multivariate Analysis of Variance were carried out to evaluate statistical support (1) for the major groups recovered using UPGMA and PCA, and (2) for the varieties. All analyses recovered three major groups coincident with (1) var. altissima, (2) var. longifolia, and (3) all other varieties. These results, together with geographical and habitat information, were taken as evidence of three separate metapopulation lineages recognized here as three distinct species. Nomenclatural adjustments, including reclassifying formerly misapplied types, are proposed.

  19. Endogenous isoflavone methylation correlates with the in vitro rooting phases of Spartium junceum L. (Leguminosae).

    Clematis, Francesca; Viglione, Serena; Beruto, Margherita; Lanzotti, Virginia; Dolci, Paola; Poncet, Christine; Curir, Paolo

    2014-09-01

    Spartium junceum L. (Leguminosae) is a perennial shrub, native to the Mediterranean region in southern Europe, widespread in all the Italian regions and, as a leguminous species, it has a high isoflavone content. An in vitro culture protocol was developed for this species starting from stem nodal sections of in vivo plants, and isoflavone components of the in vitro cultured tissues were studied by means of High Performance Liquid Chromatography (HPLC) analytical techniques. Two main isoflavones were detected in the S. junceum tissues during the in vitro propagation phases: Genistein (4',5,7-Trihydroxyisoflavone), already reported in this species, and its methylated form 4',5,7-Trimethoxyisoflavone, detected for the first time in this plant species (0.750 ± 0.02 mg g(-1) dry tissue). The presence of both of these compounds in S. junceum tissues was consistently detected during the in vitro multiplication phase. The absence of the methylated form within plant tissues in the early phases of the in vitro adventitious root formation was correlated with its negative effect displayed on root induction and initiation phases, while its presence in the final "root manifestation" phase influenced positively the rooting process. The unmethylated form, although detectable in tissues in the precocious rooting phases, was no longer present in the final rooting phase. Its effect on rooting, however, proved always to be beneficial. Copyright © 2014 Elsevier GmbH. All rights reserved.

  20. Morphological analyses suggest a new taxonomic circumscription for Hymenaea courbaril L. (Leguminosae, Caesalpinioideae

    Isys Souza

    2014-06-01

    Full Text Available Hymenaea is a genus of the Resin-producing Clade of the tribe Detarieae (Leguminosae: Caesalpinioideae with 14 species. Hymenaea courbaril is the most widespread species of the genus, ranging from southern Mexico to southeastern Brazil. As currently circumscribed, H. courbaril is a polytypic species with six varieties: var. altissima, var. courbaril, var. longifolia, var. stilbocarpa, var. subsessilis, and var. villosa. These varieties are distinguishable mostly by traits related to leaflet shape and indumentation, and calyx indumentation. We carried out morphometric analyses of 14 quantitative (continuous leaf characters in order to assess the taxonomy of H. courbaril under the Unified Species Concept framework. Cluster analysis used the Unweighted Pair Group Method with Arithmetic Mean (UPGMA based on Bray-Curtis dissimilarity matrices. Principal Component Analyses (PCA were carried out based on the same morphometric matrix. Two sets of Analyses of Similarity and Non Parametric Multivariate Analysis of Variance were carried out to evaluate statistical support (1 for the major groups recovered using UPGMA and PCA, and (2 for the varieties. All analyses recovered three major groups coincident with (1 var. altissima, (2 var. longifolia, and (3 all other varieties. These results, together with geographical and habitat information, were taken as evidence of three separate metapopulation lineages recognized here as three distinct species. Nomenclatural adjustments, including reclassifying formerly misapplied types, are proposed.

  1. Wood anatomy of tribe Detarieae and comparison with tribe Caesalpinieae (Leguminosae, Caesalpinioideae) in Venezuela.

    Melandri, José Luis; de Pernía, Narcisana Espinoza

    2009-01-01

    We studied the wood anatomy of 29 species belonging to 10 genera of the tribe Detarieae, subfamily Caesalpinioideae and compare them with tribe Caesalpinieae. Detarieae is the largest of four tribes of Caesalpinioideae, with 84 genera, only eleven occur in Venezuela with species of timber importance. The specimens were collected in Venezuela and include wood samples from the collection of the Laboratorio de Anatomía de Maderas de la Facultad de Ciencias Forestales y Ambientales de la Universidad de Los Andes, Venezuela, and of the Forest Products Laboratory of the USDA Forest Service in Madison, Wisconsin, USA. The terminology and methodology used followed the IAWA List of Microscopic Features for Hardwood Identification of the IAWA Committee, 1989. Measurements from each specimen were averaged (vessel diameters, vessel element lengths, intervessels pit size, fibre lengths and ray height). The species of Detarieae can be separated using a combination of diagnostic features. Wood characters that provide the most important diagnosis and may be used in systematics of Detarieae include: intercellular axial canals, rays heterocellular, rays exclusively or predominantly uniseriate, prismatic crystals common in ray cells, irregular storied structure and fibre wall thickness. For comparative anatomy between Detarieae and Caesalpinieae: intercellular axial canals, heterocellular rays, rays exclusively or predominantly uniseriate, prismatic crystals common in ray cells (in Detarieae) and regular storied structure, fibres septate, fibre wall thick or very thick, rays homocellular, multiseriate rays and silica bodies (in Caesalpinieae). Axial parenchyma is typically a good diagnostic feature for Leguminosae, but not for Detarieae and Caesalpinieae comparisons.

  2. The virtual lover: variable and easily guided 3D fish animations as an innovative tool in mate-choice experiments with sailfin mollies-I. Design and implementation.

    Müller, Klaus; Smielik, Ievgen; Hütwohl, Jan-Marco; Gierszewski, Stefanie; Witte, Klaudia; Kuhnert, Klaus-Dieter

    2017-02-01

    Animal behavior researchers often face problems regarding standardization and reproducibility of their experiments. This has led to the partial substitution of live animals with artificial virtual stimuli. In addition to standardization and reproducibility, virtual stimuli open new options for researchers since they are easily changeable in morphology and appearance, and their behavior can be defined. In this article, a novel toolchain to conduct behavior experiments with fish is presented by a case study in sailfin mollies Poecilia latipinna . As the toolchain holds many different and novel features, it offers new possibilities for studies in behavioral animal research and promotes the standardization of experiments. The presented method includes options to design, animate, and present virtual stimuli to live fish. The designing tool offers an easy and user-friendly way to define size, coloration, and morphology of stimuli and moreover it is able to configure virtual stimuli randomly without any user influence. Furthermore, the toolchain brings a novel method to animate stimuli in a semiautomatic way with the help of a game controller. These created swimming paths can be applied to different stimuli in real time. A presentation tool combines models and swimming paths regarding formerly defined playlists, and presents the stimuli onto 2 screens. Experiments with live sailfin mollies validated the usage of the created virtual 3D fish models in mate-choice experiments.

  3. The virtual lover: variable and easily guided 3D fish animations as an innovative tool in mate-choice experiments with sailfin mollies-II. Validation.

    Gierszewski, Stefanie; Müller, Klaus; Smielik, Ievgen; Hütwohl, Jan-Marco; Kuhnert, Klaus-Dieter; Witte, Klaudia

    2017-02-01

    The use of computer animation in behavioral research is a state-of-the-art method for designing and presenting animated animals to live test animals. The major advantages of computer animations are: (1) the creation of animated animal stimuli with high variability of morphology and even behavior; (2) animated stimuli provide highly standardized, controlled and repeatable testing procedures; and (3) they allow a reduction in the number of live test animals regarding the 3Rs principle. But the use of animated animals should be attended by a thorough validation for each test species to verify that behavior measured with live animals toward virtual animals can also be expected with natural stimuli. Here we present results on the validation of a custom-made simulation for animated 3D sailfin mollies Poecilia latipinna and show that responses of live test females were as strong to an animated fish as to a video or a live male fish. Movement of an animated stimulus was important but female response was stronger toward a swimming 3D fish stimulus than to a "swimming" box. Moreover, male test fish were able to discriminate between animated male and female stimuli; hence, rendering the animated 3D fish a useful tool in mate-choice experiments with sailfin mollies.

  4. de novo'' aneurysms following endovascular procedures

    Briganti, F.; Cirillo, S.; Caranci, F.; Esposito, F.; Maiuri, F.

    2002-01-01

    Two personal cases of ''de novo'' aneurysms of the anterior communicating artery (ACoA) occurring 9 and 4 years, respectively, after endovascular carotid occlusion are described. A review of the 30 reported cases (including our own two) of ''de novo'' aneurysms after occlusion of the major cerebral vessels has shown some features, including a rather long time interval after the endovascular procedure of up to 20-25 years (average 9.6 years), a preferential ACoA (36.3%) and internal carotid artery-posterior communicating artery (ICA-PCoA) (33.3%) location of the ''de novo'' aneurysms, and a 10% rate of multiple aneurysms. These data are compared with those of the group of reported spontaneous ''de novo'' aneurysms after SAH or previous aneurysm clipping. We agree that the frequency of ''de novo'' aneurysms after major-vessel occlusion (two among ten procedures in our series, or 20%) is higher than commonly reported (0 to 11%). For this reason, we suggest that patients who have been submitted to endovascular major-vessel occlusion be followed up for up to 20-25 years after the procedure, using non-invasive imaging studies such as MR angiography and high-resolution CT angiography. On the other hand, periodic digital angiography has a questionable risk-benefit ratio; it may be used when a ''de novo'' aneurysm is detected or suspected on non-invasive studies. The progressive enlargement of the ACoA after carotid occlusion, as described in our case 1, must be considered a radiological finding of risk for ''de novo'' aneurysm formation. (orig.)

  5. Inventario de Leguminosas activas y evaluación de su potencial de nitrificación, en zonas secas del cantón Paltas.

    Orellana Malla, Gloria Esmeralda

    2007-01-01

    Las leguminosas, grupo de plantas muy numeroso, que incluye unas 17000 especies, antes considerado como una única familia y en la actualidad agrupadas en el orden Fabales. Las leguminosas tienen una gran importancia desde el punto de vista económico ya que incluyen muchas especies que se utilizan como alimento, por ejemplo la arveja, el fréjol, el maní; algunas otras que son productoras de aceite, como la soya; otras de interés forrajero como el trébol y la alfalfa o especies ornamentales com...

  6. BALANCE PARCIAL DE NITRÓGENO EN EL SISTEMA DE CULTIVO DE MAÍZ (Zea mays L.) CON COBERTURA DE LEGUMINOSAS EN CHIAPAS, MÉXICO

    José David Álvarez-Solís; Ramón Muñoz-Arroyo; Esperanza Huerta-Lwanga; José Nahed-Toral

    2016-01-01

    El potencial de las leguminosas para mejorar la fertilidad del suelo y sostener la producción de cultivos asociados como el maíz, varía entre especies. Este trabajo evalúa la contribución de 3 leguminosas como cultivos de cobertura (CC) en el balance parcial de Nitrógeno (N) en el cultivo de maíz. Fue realizado en Ejido La Bella Ilusión, Maravilla Tenejapa, estado de Chiapas, México, con 4 tratamientos en asociación al cultivo de maíz: 1) frijol nescafé (Mucuna pruriens), 2) frijol arroz (Vig...

  7. El género Ormosia Jacks: (Leguminosae, Papilionoideae) en el estado de Guerrero, México

    Cruz-Durán, Ramiro; Jiménez-Ramírez, Jaime

    2015-01-01

    Se registra por primera vez la presencia del género Ormosia para el estado de Guerrero, México, con dos especies: Ormosia carinata y O. oaxacana (Leguminosae, Papilionoideae, tribe Sophoreae). Se incluyen las descripciones de ambas, datos referentes a los ejemplares, una clave dicotómica para diferenciarlas, y la ilustración de O. carinata. Ormosia carinata era conocida como elemento endémico de los estados de Veracruz y Oaxaca, en las regiones de Los Tuxtlas y de Uxpanapa. Ormosia carinat...

  8. Detección y caracterización preliminar de lectinas presentes en semillas de leguminosas

    de Navarro, Yolanda; Pérez, Gerardo

    2009-01-01

    La aglutinación de eritrocitos humanos o animales fue ensayada con 23 especies de leguminosas. Las semillas de Bauhinia picta, marindus indica, Dioclea lehmannii y Erythrina rubrinervia poseen lectinas inespecíficas para el sistema ABO; Crotalaria agatifolia, C. spp, Cassia indecora y Ormosia spp, presentan cierto grado de especificidad. Se ensayaron eritrocitos de seis especies animales, observándose aglutinación con las especies ya citadas y además con Cassia fruticosa, C. reticulata, Delon...

  9. Evolution in African tropical trees displaying ploidy-habitat association: The genus Afzelia (Leguminosae).

    Donkpegan, Armel S L; Doucet, Jean-Louis; Migliore, Jérémy; Duminil, Jérôme; Dainou, Kasso; Piñeiro, Rosalía; Wieringa, Jan J; Champluvier, Dominique; Hardy, Olivier J

    2017-02-01

    Polyploidy has rarely been documented in rain forest trees but it has recently been found in African species of the genus Afzelia (Leguminosae), which is composed of four tetraploid rain forest species and two diploid dry forest species. The genus Afzelia thus provides an opportunity to examine how and when polyploidy and habitat shift occurred in Africa, and whether they are associated. In this study, we combined three plastid markers (psbA, trnL, ndhF), two nuclear markers (ribosomal ITS and the single-copy PEPC E7 gene), plastomes (obtained by High Throughput Sequencing) and morphological traits, with an extensive taxonomic and geographic sampling to explore the evolutionary history of Afzelia. Both nuclear DNA and morphological vegetative characters separated diploid from tetraploid lineages. Although the two African diploid species were well differentiated genetically and morphologically, the relationships among the tetraploid species were not resolved. In contrast to the nuclear markers, plastid markers revealed that one of the diploid species forms a well-supported clade with the tetraploids, suggesting historical hybridisation, possibly in relation with genome duplication (polyploidization) and habitat shift from dry to rain forests. Molecular dating based on fossil-anchored gene phylogenies indicates that extant Afzelia started diverging c. 14.5 or 20Ma while extant tetraploid species started diverging c. 7.0 or 9.4Ma according to plastid and nuclear DNA, respectively. Additional studies of tropical polyploid plants are needed to assess whether the ploidy-habitat association observed in African Afzelia would reflect a role of polyploidization in niche divergence in the tropics. Copyright © 2016 Elsevier Inc. All rights reserved.

  10. Anti-Fatigue and Antioxidant Activity of the Polysaccharides Isolated from Millettiae speciosae Champ. Leguminosae

    Xiao-Ning Zhao

    2015-10-01

    Full Text Available Millettiae speciosae Champ. Leguminosae (MSC, is a well-known Chinese herb traditionally used as food material and medicine for enhancing physical strength. Our preliminary study found that the aqueous extract of this herb (MSE had an anti-fatigue effect. In this paper, we further separated MSE into total polysaccharides (MSP and supernatant (MSS by alcohol precipitation, and explored which fraction was active for its anti-fatigue effect. Mice were orally administered with MSP or MSS at the doses of 200, 400, and 800 mg/kg for 20 days and the anti-fatigue effect was assessed by exhaustive swimming exercise (ESE. The biochemical parameters related to fatigue after ESE and the in vitro antioxidant activity of active fraction were determined. Our results showed that MSP, instead of MSS, significantly extended the swimming time to exhaustion (p < 0.05, indicating that MSP is responsible for the anti-fatigue effect of MSE. In addition, MSP treatment increased the levels of glucose (Glu and muscle glycogen, whereas it decreased the accumulations of blood urea nitrogen (BUN and lactic acid (Lac. Moreover, ESE increased the levels of creatine phosphokinase (CK, lactic dehydrogenase (LDH, and malondialdehyde (MDA but reduced superoxide dismutase (SOD and glutathione (GSH in plasma. In contrast, MSP inhibited all the above changes relating to fatigue. Furthermore, an in vitro antioxidant test revealed that MSP dose-dependently scavenged ·OH and DPPH free radicals. Taken together, these findings strongly suggested that MSP was able to alleviate physical fatigue by increasing energy resources and decreasing accumulation of detrimental metabolites. The antioxidant activity may crucially contribute to the observed anti-fatigue effect of MSP.

  11. Morphological and agronomical characterization and estimates of genetic parameters of sesbania Scop. (Leguminosae accessions

    Veasey E.A.

    1999-01-01

    Full Text Available Twenty-two accessions of seven Sesbania (Leguminosae species: S. emerus, S. rostrata, S. tetraptera, S. exasperata (annuals, S. grandiflora, S. sesban and S. virgata (perennials, used for ruminant fodder, firewood, wood products, soil improvement, and human food, were investigated, with the aim of characterizing both inter- and intraspecific genetic variability, estimating genetic parameters for the characters evaluated and appraising the forage potential of the accessions. These were planted at the Instituto de Zootecnia, Nova Odessa, SP, Brazil, in a randomized complete block design with 22 treatments and four replications. Seventeen morphological and 17 agronomic characters were evaluated. Genetic parameters coefficient of intraspecific genetic diversity (bi and coefficient of intraspecific genetic variation (CVgi were obtained for the species represented by more than one accession. Highly significant differences were observed among as well as within species for most characters, showing considerable genetic variability. S. exasperata showed intraspecific genetic variability for the largest number of morphological characters. The same was observed for S. sesban for the agronomic characters. Most of the characters gave high bi values, above 0.80, indicating the possibility of selecting superior genotypes. The CVgi values, on the other hand, which indicate the magnitude of the existing genetic variability relative to the character mean, varied according to the species and character evaluated. Differences between annual and perennial species were observed, with higher biomass yields presented by the annuals at the first cut and by the perennials after the second cut, reaching the highest yield at the third cut. The annual species had higher seed production. Accession NO 934 of S. sesban gave the highest biomass yields and regrowth vigor, showing promise as a forage legume plant.

  12. Classification of the Leguminosae-Papilionoideae: A Numerical Re-assessment

    Adel EL-GAZZAR

    2013-12-01

    Full Text Available The subdivision of the Leguminosae-Papilionoideae into taxa of lower rank was subject for major discrepancies between traditional classifications while more recent phylogenetic studies provided no decisive answer to this problem. As a contribution towards resolving this situation, 81 morphological characters were recorded comparatively for 226 species and infra-specific taxa belonging to 75 genera representing 21 of the 32 tribes currently recognized in this subfamily. The data matrix was subjected to cluster analysis using the Sørensen distance measure and Ward’s clustering method of the PC-ord version-5 package of programs for Windows. This combination was selected from among the 56 combinations available in this package because it produced the taxonomically most feasible arrangement of the genera and species. The 75 genera are divided into two main groups A and B, whose recognition requires little more than the re-alignment of a few genera to resemble tribes 1-18 (Sophoreae to Hedysareae and tribes 19-32 (Loteae to Genisteae, respectively, in the currently accepted classification. Only six of the 21 tribes represented by two or more genera seem sufficiently robust as the genera representing each of them hold together in only one of the two major groups A and B. Of the 29 genera represented by more than one species each 17, 7 and 5 are taxonomically coherent, nearly coherent and incoherent, respectively. The currently accepted circumscription and inter-relationships among the disrupted tribes and genera are in need of much detailed investigation.

  13. Classification of the Leguminosae-Papilionoideae: A Numerical Re-assessment

    Adel EL-GAZZAR

    2013-12-01

    Full Text Available The subdivision of the Leguminosae-Papilionoideae into taxa of lower rank was subject for major discrepancies between traditional classifications while more recent phylogenetic studies provided no decisive answer to this problem. As a contribution towards resolving this situation, 81 morphological characters were recorded comparatively for 226 species and infra-specific taxa belonging to 75 genera representing 21 of the 32 tribes currently recognized in this subfamily. The data matrix was subjected to cluster analysis using the Sørensen distance measure and Ward’s clustering method of the PC-ord version-5 package of programs for Windows. This combination was selected from among the 56 combinations available in this package because it produced the taxonomically most feasible arrangement of the genera and species. The 75 genera are divided into two main groups A and B, whose recognition requires little more than the re-alignment of a few genera to resemble tribes 1-18 (Sophoreae to Hedysareae and tribes 19-32 (Loteae to Genisteae, respectively, in the currently accepted classification. Only six of the 21 tribes represented by two or more genera seem sufficiently robust as the genera representing each of them hold together in only one of the two major groups A and B. Of the 29 genera represented by more than one species each 17, 7 and 5 are taxonomically coherent, nearly coherent and incoherent, respectively. The currently accepted circumscription and inter-relationships among the disrupted tribes and genera are in need of much detailed investigation.

  14. Antimalarial efficacy of Albizia lebbeck (Leguminosae against Plasmodium falciparum in vitro & P. berghei in vivo

    Shagun Kalia

    2015-01-01

    Full Text Available Background & objectives: Albizia lebbeck Benth. (Leguminosae has long been used in Indian traditional medicine. The current study was designed to test antimalarial activity of ethanolic bark extract of A. lebbeck (EBEAL. Methods: EBEAL was prepared by soxhlet extraction and subjected to phytochemical analysis. The extract was evaluated for its in vitro antimalarial activity against Plasmodium falciparum chloroquine (CQ sensitive (MRC2 and CQ resistant (RKL9 strains. Cytotoxicity (CC 50 of extract against HeLa cells was evaluated. Median lethal dose (LD 50 was determined to assess safety of EBEAL in BALB/c mice. Schizonticidal (100-1000 mg/kg and preventive (100-750 mg/kg activities of EBEAL were evaluated against P. berghei. Curative activity (100-750 mg/kg of extract was also evaluated. Results: Phytochemical screening revealed presence of alkaloids, flavonoids, phenols, saponins, terpenes and phytosterols. The extract exhibited IC 50 of 8.2 µg/ml (MRC2 and 5.1 µg/ml (RKL9. CC 50 of extract on HeLa cell line was calculated to be >1000 µg/ml. EBEAL showed selectivity indices (SI of >121.9 and >196.07 against MRC2 and RKL9 strains of P. falciparum, respectively. LD 50 of EBEAL was observed to be >5 g/kg. Dose-dependent chemosuppression was observed with significant ( p100 mg/kg. Significant (P<0.001 curative and repository activities were exhibited by 750 mg/kg concentration of extract on D7. Interpretation & conclusions: The present investigation reports antiplasmodial efficacy of EBEAL in vitro against P. falciparum as evident by high SI values. ED 50 of <100 mg/kg against P. berghei categorizes EBEAL as active antimalarial. Further studies need to be done to exploit its antiplasmodial activity further.

  15. Antimalarial efficacy of Albizia lebbeck (Leguminosae) against Plasmodium falciparum in vitro & P. berghei in vivo.

    Kalia, Shagun; Walter, Neha Sylvia; Bagai, Upma

    2015-12-01

    Albizia lebbeck Benth. (Leguminosae) has long been used in Indian traditional medicine. The current study was designed to test antimalarial activity of ethanolic bark extract of A. lebbeck (EBEAL). EBEAL was prepared by soxhlet extraction and subjected to phytochemical analysis. The extract was evaluated for its in vitro antimalarial activity against Plasmodium falciparum chloroquine (CQ) sensitive (MRC2) and CQ resistant (RKL9) strains. Cytotoxicity (CC 50 ) of extract against HeLa cells was evaluated. Median lethal dose (LD 50 ) was determined to assess safety of EBEAL in BALB/c mice. Schizonticidal (100-1000 mg/kg) and preventive (100-750 mg/kg) activities of EBEAL were evaluated against P. berghei. Curative activity (100-750 mg/kg) of extract was also evaluated. Phytochemical screening revealed presence of alkaloids, flavonoids, phenols, saponins, terpenes and phytosterols. The extract exhibited IC 50 of 8.2 µg/ml (MRC2) and 5.1 µg/ml (RKL9). CC 50 of extract on HeLa cell line was calculated to be >1000 µg/ml. EBEAL showed selectivity indices (SI) of >121.9 and >196.07 against MRC2 and RKL9 strains of P. falciparum, respectively. LD 50 of EBEAL was observed to be >5 g/kg. Dose-dependent chemosuppression was observed with significant ( p50 >100 mg/kg. Significant (P50 mg/kg concentration of extract on D7. The present investigation reports antiplasmodial efficacy of EBEAL in vitro against P. falciparum as evident by high SI values. ED 50 of <100 mg/kg against P. berghei categorizes EBEAL as active antimalarial. Further studies need to be done to exploit its antiplasmodial activity further.

  16. Morfologia de nectários em Leguminosae senso lato em áreas de caatinga no Brasil Nectary morphology of Leguminosae senso lato in areas of dry seasonal forest in Brazil

    Yanna Melo

    2010-12-01

    Full Text Available Nectários extraflorais (Nefs são glândulas secretoras de néctar encontradas em diversas espécies de Angiospermas, inclusive Leguminosae. Essas estruturas podem se apresentar sob diferentes formas (elevados, embebidos; com ou sem estipe; cores distintas e posições nas plantas (na raque, no pecíolo, sendo essas características relevantes aos estudos de taxonomia e sistemática. Este trabalho analisou a diversidade morfológica dos Nefs em Leguminosae de uma área prioritária para a conservação da caatinga no Estado de Pernambuco. As 35 espécies de Legumionsae estudadas foram coletadas no Município de Mirandiba, no semi-árido Pernambucano, e submetidas às técnicas usuais para análise e descrição morfológica. Entre essas espécies, foram caracterizados Nefs com origem primária (não substitutivos e secundária (substitutivos. Dois diferentes tipos com onze formatos distintos foram encontrados entre elas. Uma grande variedade de localização, coloração, projeção, e dimensão foram registradas aqui. Uma chave de identificação e ilustrações foram elaboradas também. Os dados apresentados aqui ampliam o número de espécies estudadas com Nefs para a família, e também confirmam a importância taxonômica e ecológica dessas estruturas para os legumes da região do semi-árido do Brasil.Extrafloral nectaries (Efns are nectar secreting glands found in many species of Angiosperms, including Leguminosae. These structures have various forms (elevated, embedded; stalk present or not; different colors and positions on the plants (on the rachis, on the petiole, and these characteristics are relevant to taxonomy and morphology studies. This work analyses the morphological diversity of Efns in Leguminosae from a priority conservation area of caatinga in Pernambuco state. The 35 Leguminosae species studied were collected in Mirandiba municipality, a semi-arid region of Pernambuco and submitted to the usual techniques of anatomy and

  17. DeNovoGUI: an open source graphical user interface for de novo sequencing of tandem mass spectra.

    Muth, Thilo; Weilnböck, Lisa; Rapp, Erdmann; Huber, Christian G; Martens, Lennart; Vaudel, Marc; Barsnes, Harald

    2014-02-07

    De novo sequencing is a popular technique in proteomics for identifying peptides from tandem mass spectra without having to rely on a protein sequence database. Despite the strong potential of de novo sequencing algorithms, their adoption threshold remains quite high. We here present a user-friendly and lightweight graphical user interface called DeNovoGUI for running parallelized versions of the freely available de novo sequencing software PepNovo+, greatly simplifying the use of de novo sequencing in proteomics. Our platform-independent software is freely available under the permissible Apache2 open source license. Source code, binaries, and additional documentation are available at http://denovogui.googlecode.com .

  18. A study of the morphoanatomical characters of the leaves of Chamaecrista (L. Moench sect. Apoucouita (Leguminosae-Caesalpinioideae

    Ítalo Antônio Cotta Coutinho

    2016-01-01

    Full Text Available ABSTRACT Little attention has been paid to species of Chamaecrista sect. Apoucouita (Leguminosae-Caesalpinioideae, especially regarding anatomical studies. When only vegetative material is available, the identification of such species may be difficult. Additionally, vegetative material of some species of C. sect. Apoucouita may be even harder to identify because they can resemble species of Inga Mill. (Leguminosae-Mimosoideae. The present study focused on recognizing morphoanatomical characters of leaves that are taxonomically useful for the species of C. sect. Apoucouita by employing standard anatomical techniques. The arrangement of the vascular system in the petiole/rachis, dorsiventral mesophyll, mucilage idioblasts in the epidermis of leaflets and hypostomatic leaves were some of the characters shared by all species studied. Length of the petiole, position and type of extrafloral nectaries, leaflet venation, presence and type of papillae on the epidermis of the leaflet blades and sclereids in the mesophyll were some of the characters useful in the distinction of taxa. The vascular arrangement of the petiole/rachis is a promising character in the distinction of species of C. sect. Apoucouita and Inga. Based on morphoanatomical data, the taxonomic revision of some species and varieties ascribed to C. sect. Apoucouita is suggested.

  19. Molly R. Hames | NREL

    -7758 Areas of Expertise Budget and Project Commercial Management Contracting and Risk Management Stakeholder Relations Resource Leadership and Capability Development Transformational Leadership and People Management Benchmarking and Industry Best Practices Education M.B.A., Regis University (Operations Management

  20. MDMA (Ecstasy or Molly)

    ... closeness and empathy. Dopamine —helps to control movement, motivation, emotions, and sensations like pleasure. The extra dopamine ... long lasting, including confusion, depression, and problems with memory and attention. Learn more about how the brain ...

  1. A new species of Desmodium (Leguminosae; tribe Desmodieae) from Thailand and Laos with two new distribution records and lectotypifications for Thailand

    Saisorn, Witsanu; Balslev, Henrik; Chantaranothai, Pranom

    2016-01-01

    A new species of Desmodium (Leguminosae), D. brevipedicellatum W. Saisorn, Chantar. & Balslev from Thailand and Laos is described and illustrated. Two taxa, D. concinnum DC. and D. laxiflorum DC. subsp. lacei (Schindl.) H. Ohashi, are reported as new for Thailand. Lectotypes of D. amoenum Wall. e...

  2. Modular Engineering Concept at Novo Nordisk Engineering

    Moelgaard, Gert; Miller, Thomas Dedenroth

    1997-01-01

    This report describes the concept of a new engineering method at Novo Nordisk Engineering: Modular Engineering (ME). Three tools are designed to support project phases with different levels of detailing and abstraction. ME supports a standard, cross-functional breakdown of projects that facilitates...

  3. Crescimento e acúmulo de nutrientes por plantas espontâneas e por leguminosas utilizadas para adubação verde

    C. Favero

    2000-03-01

    Full Text Available As espécies vegetais espontâneas, nas áreas de cultivo agrícola, têm sido tratadas como "plantas daninhas", "ervas invasoras", "inços" e outras denominações, do ponto de vista dos prejuízos que podem acarretar às espécies cultivadas. No entanto, as espontâneas podem promover os mesmos efeitos de proteção do solo e ciclagem de nutrientes que espécies cultivadas ou introduzidas para adubação verde. O crescimento e o acúmulo de nutrientes pela parte aérea de espontâneas e de leguminosas utilizadas como adubos verdes foram medidos em um experimento de campo em Sete Lagoas (MG, na Embrapa Milho e Sorgo. O experimento consistiu de cinco espécies de leguminosas (feijão-de-porco, feijão-bravo do Ceará, mucuna-preta, lab-lab e guandu, submetidas a duas condições de manejo (com e sem capina, e uma testemunha (somente espontâneas. No florescimento das leguminosas, foram obtidos a massa da matéria seca e o teor de nutrientes da parte aérea de cada espécie de leguminosa e das espontâneas presentes nas parcelas. O sistema com apenas as espontâneas produziu menos biomassa e acumulou menos nutrientes que os sistemas com leguminosas. Foram poucas as espontâneas que apresentaram teores de carbono, cálcio e nitrogênio próximos ou superiores aos das leguminosas. No entanto, para potássio, magnésio e fósforo, ocorreu o inverso. A maioria das espontâneas apresentou teores de potássio, magnésio e de fósforo superiores aos das leguminosas, destacando-se: Portulaca oleracea, Euphorbia heterophylla, Bidens pilosa, Commelina benghalensis e Melanpodium perfoliatum.

  4. ACTIVIDAD ANTIMICÓTICA DEL ACEITE ESENCIAL DE LAS HOJAS DE Minthostachys mollis (MUÑA) COMPARADO CON EL FLUCONAZOL EN CULTIVO DE Candida albicans

    Katherine M Alcalá-Marcos; A. Giancarlo Alvarado-Gamarra; L Arturo Alejandro-Paredes; Eduardo Huayané-Linares

    2011-01-01

    Objetivo.- Demostrar el efecto antimicótico del aceite esencial de las hojas de Minthostachys mollis (muña) en comparación con el Fluconazol en cultivo de Candida albicans. Materiales y Método.- Estudio experimental. El efecto antimicótico se estudió midiendo 80 halos de inhibición distribuidos en 5 grupos mediante el método Kirby-Bauer. Se utilizó una cepa clínica de Candida albicans. Los grupos de estudio fueron grupo muña 25% (GM25%), grupo muña 50% (GM50%), grupo muña 100% (GM100%), un g...

  5. Self-Reported Ecstasy/MDMA/"Molly" Use in a Sample of Nightclub and Dance Festival Attendees in New York City.

    Palamar, Joseph J; Acosta, Patricia; Ompad, Danielle C; Cleland, Charles M

    2017-01-02

    Ecstasy (MDMA) use has regained popularity in the United States, particularly in the form of "Molly," which is often marketed as pure MDMA. Surveys have generally not included "Molly" in the definition of ecstasy, so rates of use may be underestimated. As popularity of ecstasy increases, research is needed to examine use among those at highest risk for use-nightlife attendees. We surveyed 679 young adults (age 18-25) entering nightclubs and festivals holding electronic dance music (EDM) parties in New York City in 2015. A variation of time-space sampling was utilized. We examined prevalence and correlates of self-reported lifetime ecstasy use. Self-reported lifetime ecstasy use was common (42.8%, 95% CI: 32.8, 52.7). Use was most common among older participants, frequent party attendees, and those reporting higher levels of exposure to users. Those surveyed outside of festivals were less likely to report use compared to those surveyed outside of nightclubs (AOR = 0.37, p = .015). Over a third of ecstasy users (36.8%)reported use in pill, powder, and crystal form. Ecstasy users were also more likely to report use of other drugs, including novel psychoactive substances (e.g., 2C series drugs, synthetic cathinones ["bath salts"]). Half (50.4%) reported suspecting (21.9%) or finding out (28.5%) that their ecstasy had ever contained a drug other than MDMA. A large percentage of nightlife attendees in NYC report lifetime ecstasy use. Findings should inform prevention and harm reduction programming. Further research is needed as ecstasy continues to change (e.g., in form, purity, and name).

  6. Aspectos agronômicos de leguminosas para adubação verde no Cerrado do Alto Vale do Jequitinhonha

    Ricardo Borges Teodoro

    2011-04-01

    Full Text Available O uso intensivo e inadequado dos solos acelera sua degradação, sendo necessária a intervenção por meio de práticas conservacionistas para restaurar a capacidade produtiva dos mesmos. O objetivo deste estudo foi avaliar o comportamento e desenvolvimento de diferentes leguminosas utilizadas como adubos verdes em solos de Cerrado, Alto Vale do Jequitinhonha, em Turmalina, MG. O delineamento experimental adotado foi em blocos ao acaso, com sete tratamentos e quatro repetições, sendo os tratamentos constituídos pelas leguminosas: mucuna-cinza (Mucuna nivea, mucuna-preta (Mucuna aterrima, lablabe (Dolichos lablab, feijão-de-porco (Canavalia ensiformis, Crotalaria juncea, Crotalaria spectabilis e guandu-anão (Cajanus cajan. O ciclo precoce de C . juncea, C. spectabilis e feijão-de-porco favorece a inserção destes nos sistemas de cultivo. Aos 40 dias, o feijão-de-porco e mucuna-cinza já cobriam o solo, com 67 e 63 %; já o guandu-anão e C. juncea apresentaram os maiores desenvolvimentos, nesse período. Os teores de N, P e K tendem a diminuir nas avaliações realizadas nas diferentes fases vegetativas, o que contribui para melhor escolha da época de manejo das leguminosas. Crotalaria juncea, mucuna-cinza, feijão-de-porco e mucuna-preta foram as leguminosas que se destacaram na produção de matéria seca, o que torna essas espécies promissoras para adubação verde na região. As leguminosas, em sua maioria, apresentam potencial para reciclagem dos macronutrientes e aporte de N aos sistemas de produção.

  7. Estudio genecológico en prosopis laevigata, acacia farnesiana y acacia schaffneri (leguminosae

    Sandra Luz Gómez Acevedo

    2003-01-01

    Full Text Available Se emplea una técnica de extendido en superficie y secado al aire (splash para cromosomas vegetales a fin de analizar la posible respuesta genotipo-ambiente de tres especies de leguminosas típicas de las zonas áridas y semiáridas mexicanas, ubicadas en poblaciones con características climáticas diferentes. Las especies estudiadas fueron Prosopis laevigata y Acacia schaffneri del municipio de Santiago de Anaya, estado de Hidalgo (20o 16’ N y P. laevigata y Acacia farnesiana del municipio de Bermejillo, estado de Durango (25o 49’ N. Los parámetros evaluados fueron las longitudes cromosómicas totales, el cariotipo, la frecuencia de polisomatía y el peso de las semillas. En Prosopis laevigata se corrobora un 2n=28 y diferencias interpoblacionales estadísticamente significativas (a=0,01 en las longitudes cromosómicas totales, sin modificación de la fórmula cariotípica (2m+10sm+2st con frecuencia de polisomatía que no rebasó el 10%. En las especies del género Acacia se registraron números cromosómicos diploides 2n=26 sin diferencias interespecíficas estadísticamente significativas (a= 0,01 en las longitudes cromosómicas totales; no obstante se obtuvieron fórmulas cariotípicas diferentes, reportadas por primera vez empleando una técnica de extendido y secado al aire: 9m+4sm para A. schaffneri y 9m+2sm+2st para A. farnesiana. En ambas especies la polisomatía tuvo una frecuencia similar sin rebasar el 30%. Para Prosopis y Acacia no se encontraron diferencias significativas (a= 0,01 en relación al peso de la semilla. Los resultados obtenidos señalan una clase de adaptación en estrecha

  8. Acylated flavonol tri- and tetraglycosides in the flavonoid metabolome of Cladrastis kentukea (Leguminosae).

    Kite, Geoffrey C; Rowe, Emily R; Lewis, Gwilym P; Veitch, Nigel C

    2011-04-01

    The foliar metabolome of Cladrastis kentukea (Leguminosae) contains a complex mixture of flavonoids including acylated derivatives of the 3-O-rhamnosyl(1→2)[rhamnosyl(1→6)]-galactosides of kaempferol and quercetin and their 7-O-rhamnosides, together with an array of non-acylated kaempferol and quercetin di-, tri- and tetraglycosides. Thirteen of the acylated flavonoids, 12 of which had not been reported previously, were characterised by spectroscopic and chemical methods. Eight of these were the four isomers of kaempferol 3-O-α-l-rhamnopyranosyl(1→2)[α-l-rhamnopyranosyl(1→6)]-(3/4-O-E/Z-p-coumaroyl-β-d-galactopyranoside) and their 7-O-α-l-rhamnopyranosides, and three were isomers of quercetin 3-O-α-l-rhamnopyranosyl(1→2)[α-l-rhamnopyranosyl(1→6)]-(3/4-O-E/Z-p-coumaroyl-β-d-galactopyranoside) - the remaining 4Z isomer was identified by LC-UV-MS analysis of a crude extract. The final two acylated flavonoids characterised by NMR were the 3E and 4E isomers of kaempferol 3-O-α-l-rhamnopyranosyl(1→2)[α-l-rhamnopyranosyl(1→6)]-(3/4-O-E-feruloyl-β-d-galactopyranoside)-7-O-α-l-rhamnopyranoside while the 3Z and 4Z isomers were again detected by LC-UV-MS. Using the observed fragmentation behaviour of the isolated compounds following a variety of MS experiments, a further 18 acylated flavonoids were given tentative structures by LC-MS analysis of a crude extract. Acylated flavonoids were absent from the flowers of C. kentukea, which contained an array of non-acylated kaempferol and quercetin glycosides. Immature fruits contained kaempferol 3-O-α-rhamnopyranosyl(1→2)[α-rhamnopyranosyl(1→6)]-β-galactopyranoside and its 7-O-α-rhamnopyranoside as the major flavonoids with acylated flavonoids, different from those in the leaves, only present as minor constituents. The presence of acylated flavonoids distinguishes the foliar flavonoid metabolome of C. kentukea from that of a closely related legume, Styphnolobium japonicum, which contains a similar

  9. Revisão taxonômica de Myrocarpus Allemão (Leguminosae, Papilionoideae, Sophoreae Taxonomic revision of Myrocarpus Allemão (Leguminosae, Papilionoideae, Sophoreae

    Ângela L.B. Sartori

    2004-09-01

    Full Text Available Em Myrocarpus, gênero exclusivamente sul-americano, são reconhecidas cinco espécies: Myrocarpus frondosus Allemão, M. leprosus Pickel, M. venezuelensis Rudd, M. fastigiatus Allemãoe M. emarginatus A.L.B. Sartori & A.M.G. Azevedo. Na delimitação das espécies são discutidos dados de morfologia, hábitats e de distribuição geográfica. A morfologia das pétalas e a ornamentação da região seminífera são caracteres relevantes na identificação das espécies, embora não utilizados até o presente. Este estudo apresenta chave de identificação das espécies, descrições, ilustrações, mapa de distribuição e novos registros de ocorrência.In Myrocarpus, an exclusively South American genus, five species are recognised: Myrocarpus frondosus Allemão, M. leprosus Pickel, M. venezuelensis Rudd, M. fastigiatus Allemãoand M. emarginatus A.L.B. Sartori & A.M.G. Azevedo. Morphologic data, habitat information and geographic distribution of each taxon are discussed. Petal morphology and ornamentation of seed chamber are an important character for species identification, though not shown previously. Key to the species, descriptions, illustrations, distribution, and new registers are presented.

  10. Extreme-Scale De Novo Genome Assembly

    Georganas, Evangelos [Intel Corporation, Santa Clara, CA (United States); Hofmeyr, Steven [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Joint Genome Inst.; Egan, Rob [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Computational Research Division; Buluc, Aydin [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Joint Genome Inst.; Oliker, Leonid [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Joint Genome Inst.; Rokhsar, Daniel [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Computational Research Division; Yelick, Katherine [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Joint Genome Inst.

    2017-09-26

    De novo whole genome assembly reconstructs genomic sequence from short, overlapping, and potentially erroneous DNA segments and is one of the most important computations in modern genomics. This work presents HipMER, a high-quality end-to-end de novo assembler designed for extreme scale analysis, via efficient parallelization of the Meraculous code. Genome assembly software has many components, each of which stresses different components of a computer system. This chapter explains the computational challenges involved in each step of the HipMer pipeline, the key distributed data structures, and communication costs in detail. We present performance results of assembling the human genome and the large hexaploid wheat genome on large supercomputers up to tens of thousands of cores.

  11. Wegener's granulomatosis occurring de novo during pregnancy.

    Alfhaily, F; Watts, R; Leather, A

    2009-01-01

    Wegener's granulomatosis (WG) is rarely diagnosed during the reproductive years and uncommonly manifests for the first time during pregnancy. We report a case of de novo WG presenting at 30 weeks gestation with classical symptoms of WG (ENT, pulmonary). The diagnosis was confirmed by radiological, laboratory, and histological investigations. With a multidisciplinary approach, she had a successful vaginal delivery of a healthy baby. She was treated successfully by a combination of steroids, azathioprine and intravenous immunoglobulin in the active phase of disease for induction of remission and by azathioprine and steroids for maintenance of remission. The significant improvement in her symptoms allowed us to continue her pregnancy to 37 weeks when delivery was electively induced. Transplacental transmission of PR3-ANCA occurred but the neonate remained well. This case of de novo WG during pregnancy highlights the seriousness of this disease and the challenge in management of such patients.

  12. MRUniNovo: an efficient tool for de novo peptide sequencing utilizing the hadoop distributed computing framework.

    Li, Chuang; Chen, Tao; He, Qiang; Zhu, Yunping; Li, Kenli

    2017-03-15

    Tandem mass spectrometry-based de novo peptide sequencing is a complex and time-consuming process. The current algorithms for de novo peptide sequencing cannot rapidly and thoroughly process large mass spectrometry datasets. In this paper, we propose MRUniNovo, a novel tool for parallel de novo peptide sequencing. MRUniNovo parallelizes UniNovo based on the Hadoop compute platform. Our experimental results demonstrate that MRUniNovo significantly reduces the computation time of de novo peptide sequencing without sacrificing the correctness and accuracy of the results, and thus can process very large datasets that UniNovo cannot. MRUniNovo is an open source software tool implemented in java. The source code and the parameter settings are available at http://bioinfo.hupo.org.cn/MRUniNovo/index.php. s131020002@hnu.edu.cn ; taochen1019@163.com. Supplementary data are available at Bioinformatics online. © The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com

  13. Prosopis laevigata and Mimosa biuncifera (Leguminosae, jointly influence plant diversity and soil fertility of a Mexican semiarid ecosystem

    Rosalva García-Sánchez

    2012-03-01

    : Sitio 1, P. laevigata; Sitio 2, M. biuncifera y Sitio 3, ambas leguminosas. En cada sitio se recolectó suelo, tanto abajo y fuera del dosel de las leguminosas, además, se realizaron transectos para medir e identificar las plantas arbóreas y arbustivas, se calculó el índice de valor de importancia y la diversidad del matorral. Asimismo, se registró mayor riqueza y diversidad en el Sitio 3 (ICE 29 spp. y H’ 2.7, en comparación con el Sitio 1 (24 spp. y 2.4 y Sitio 2 (26 spp. y 2.1. La materia orgánica y el carbono orgánico del suelo, así como el N total, el P-Olsen y la mineralización de C fueron mayores en el suelo bajo dosel de ambas leguminosas. La abundancia de esporas de hongos micorrizógenos arbusculares fue favorecida por M. biunficera. La influencia de P. laevigata para crear islas más ricas en recursos fue mayor que en M. biunficera, lo anterior sugiere que cada leguminosa modifica de una forma diferente el microambiente, sin embargo, juntas aumentan la disponibilidad de nichos para el establecimiento de otras especies, lo queayuda a comprender el papel de P. laevigata y M. biuncifera sobre la colonización vegetal en ecosistemas semiáridos

  14. Desempenho de bananeiras consorciadas com leguminosas herbáceas perenes Banana plant performance intercropping with perennial herbaceous legumes

    Adriano Perin

    2009-12-01

    Full Text Available O emprego de plantas de cobertura em consórcio com bananeiras pode ser uma estratégia de manejo, possibilitando aumentos de produtividade associados à otimização de processos biológicos e maior estabilidade do sistema produtivo. Neste trabalho, objetivo-se avaliar o efeito da cobertura viva, formada por leguminosas herbáceas perenes sobre a produção de bananeira cultivar Nanicão. Os tratamentos foram: amendoim forrageiro (Arachis pintoi Krap. & Greg, cudzu tropical (Pueraria phaseoloides Benth., siratro (Macroptilium atropurpureum Urb., vegetação espontânea (dominada por Panicum maximum Jacq. e vegetação espontânea + N-fertilizante. Foi avaliado o desenvolvimento vegetativo das bananeiras entre abril/1999 e julho/2000 e os atributos de produtividade. O peso do cacho e da penca foram positivamente influenciados pelo siratro e cudzu tropical empregados como coberturas vivas, quando comparados aos demais tratamentos. Todas as leguminosas proporcionaram maior crescimento das bananeiras (notadamente a partir do 6º mês, maior número de folhas emitidas e maior proporção de cachos colhidos, em relação aos tratamentos com vegetação espontânea (com e sem N-fertilizante. As leguminosas siratro e cudzu tropical promoveram condições adequadas ao desenvolvimento das bananeiras, acarretando ganhos de produtividade e eliminação da adubação nitrogenada no bananal. O potencial benéfico das leguminosas cudzu tropical e siratro como coberturas vivas capazes de proporcionar aumentos na produtividade de banana, qualifica essas espécies como alternativa promissora para a fertilidade do solo e nutrição das bananeiras.The use of coverage plants in cover cropping with bananas can be a management strategy, increasing in productivity associated with the optimization of biological processes and greater stability of production system. The objective of this work was to evaluate the effect of live coverage by herbaceous perennial legume on

  15. Detección y caracterización preliminar de lectinas presentes en semillas de leguminosas

    Yolanda de Navarro

    2009-07-01

    Full Text Available La aglutinación de eritrocitos humanos o animales fue ensayada con 23 especies de leguminosas. Las semillas de Bauhinia picta, marindus indica, Dioclea lehmannii y Erythrina rubrinervia poseen lectinas inespecíficas para el sistema ABO; Crotalaria agatifolia, C. spp, Cassia indecora y Ormosia spp, presentan cierto grado de especificidad. Se ensayaron eritrocitos de seis especies animales, observándose aglutinación con las especies ya citadas y además con Cassia fruticosa, C. reticulata, Delonix regia, Poinciana pulquerrima, Abrus fruticulosus y Mucuna mutisiana. Los ensayos de inhibición con carbohidratos indican que las lectinas de Dioclea lehmannii y Erythrina rubrinervia actúan sobre receptores diferentes.

  16. BALANCE PARCIAL DE NITRÓGENO EN EL SISTEMA DE CULTIVO DE MAÍZ (Zea mays L. CON COBERTURA DE LEGUMINOSAS EN CHIAPAS, MÉXICO

    José David Álvarez-Solís

    2016-01-01

    Full Text Available El potencial de las leguminosas para mejorar la fertilidad del suelo y sostener la producción de cultivos asociados como el maíz, varía entre especies. Este trabajo evalúa la contribución de 3 leguminosas como cultivos de cobertura (CC en el balance parcial de Nitrógeno (N en el cultivo de maíz. Fue realizado en Ejido La Bella Ilusión, Maravilla Tenejapa, estado de Chiapas, México, con 4 tratamientos en asociación al cultivo de maíz: 1 frijol nescafé (Mucuna pruriens, 2 frijol arroz (Vigna umbellata, 3 frijol común (Phaseolus vulgaris y 4 testigo sin leguminosa. Se midió la producción de biomasa y el contenido de N, en las leguminosas y el maíz. Se hizo un balance parcial de N, que consideró el suministro de N de la biomasa de leguminosas y la extracción de N en la cosecha del maíz. La producción de biomasa seca de las leguminosas en la cosecha fue significativamente (p≤0,05 mayor en asociación con los frijoles arroz y nescafé (1290 y 1139 kg.ha-1 que en frijol común (470 kg.ha-1, con un contenido total de 35,4; 25,7 y 8,9 kg.ha-1 N, respectivamente. El rendimiento de grano de maíz fue 2390,5 kg.ha-1; se identificó que la extracción de N fue mayor en el grano, seguido de rastrojo, raíz, bráctea y olote, con 20,9; 9,4; 7,2; 2,0 y 1,5 kg.ha-1 N, respectivamente. El balance parcial de N mostró valores positivos con los frijoles arroz y nescafé, lo que indica su importancia para compensar la extracción de N del grano o de la mazorca del maíz.

  17. EFECTO DE DOS LEGUMINOSAS Y BANANO MADURO EN LA PRODUCCIÓN Y REPRODUCCIÓN DE CONEJOS NUEVA ZELANDA

    Adolfo Sánchez Laiño

    2013-02-01

    Full Text Available Resumen La investigación tuvo los siguientes objetivos: a Determinar la leguminosa tropical (Pueraria phaseoloides (Roxb Benth y Gliricidia sepium y el nivel de banano maduro (BM (50, 75, 100 y 100, 125, 150 g animal-1 día-1, que permita incrementar los parámetros reproductivos (fase uno y productivos (fase dos, en conejos Nueva Zelanda. b Determinar la Relación beneficio/costo de los tratamientos. Se utilizó 28 y 42 conejos respectivamente. Se aplicó un arreglo factorial 2 x 3 + 1, en un diseño de bloques completamente al azar (DBCA, con cuatro y tres repeticiones. Se utilizó la prueba de Tukey (p≤0.05. El mayor consumo fue para el kudzu (p0.05 el peso de las hembras al parto, el periodo de gestación, peso y tamaño de la camada al nacimiento. Los niveles de BM no influenciaron (p>0.05 sobre la ganancia de peso, índice de conversión alimenticia (ICA, peso final (PF, peso a la canal (PC y rendimiento a la canal (RC. Los tratamientos en base a leguminosas tropicales y niveles de BM superaron al testigo (p<0.01. La mayor rentabilidad en la fase 1 y 2 se obtuvo al combinar kudzu tropical más 100 y 75 g y 125 y 100 g de BM animal-1 día-1 (30.34 y 29.48%.

  18. Evaluación de la actividad antioxidante bioautográfica de cinco variedades de aceites esenciales andinos (Aristeguietia glutinosa; Myrcianthes rhopaloides; Ambrosia arborescens; Lantana camara; Minthostachys mollis)

    Guerrero Toapanta, Priscila Pamela; Pozo Morales, Karla Natalia

    2016-01-01

    This experimental work had the goal of assessing the antioxidant capabilities of five essential oils: Minthostachys mollis, Aristeguietia glutinosa, Ambrosia arborescens, Myrcianthes rhopaloides and Lantana camara; all of which were obtained from the Ecuadorian Andes. This work used the DPPH and ABTS methods to assess free radical-capturing capacity, and it used the β-carotene Test to determine the antioxidant activity of each essential oil. The natural referent used herein...

  19. Análisis fitoquímico y efecto sinérgico protector de las hojas de minthostachys mollis y malva sylvestris sobre la mucosa gástrica de rattus rattus var. albinus

    Castillo Saavedra, Ericson Félix

    2010-01-01

    The peptic ulcer is a lesion that affects an area of the gastrointestinal mucose usually in the stomach or duodenum produced by a disbalance between defensives and protects factors. This report was oriented on determinating phytochemistry of Minthostachys mollis (Kunth) Griseb, Malva sylvestris L., and analyze if these plants in study had synergistic protect effect in the acute injure of gastric mucose induced by ethanol in Rattus rattus var. albinus. Phytochemical screening was realized usin...

  20. De novo malignancy after pancreas transplantation in Japan.

    Tomimaru, Y; Ito, T; Marubashi, S; Kawamoto, K; Tomokuni, A; Asaoka, T; Wada, H; Eguchi, H; Mori, M; Doki, Y; Nagano, H

    2015-04-01

    Long-term immunosuppression is associated with an increased risk of cancer. Especially, the immunosuppression in pancreas transplantation is more intensive than that in other organ transplantation because of its strong immunogenicity. Therefore, it suggests that the risk of post-transplant de novo malignancy might increase in pancreas transplantation. However, there have been few studies of de novo malignancy after pancreas transplantation. The aim of this study was to analyze the incidence of de novo malignancy after pancreas transplantation in Japan. Post-transplant patients with de novo malignancy were surveyed and characterized in Japan. Among 107 cases receiving pancreas transplantation in Japan between 2001 and 2010, de novo malignancy developed in 9 cases (8.4%): post-transplant lymphoproliferative disorders in 6 cases, colon cancer in 1 case, renal cancer in 1 case, and brain tumor in 1 case. We clarified the incidence of de novo malignancy after pancreas transplantation in Japan. Copyright © 2015 Elsevier Inc. All rights reserved.

  1. Novos paradigmas literários

    Denise Azevedo Duarte Guimarães

    2005-12-01

    Full Text Available O artigo estuda a emergência de novos paradigmas literários, procurando refletir acerca das textualidades contemporâneas. Focaliza os hipertextos informatizados e a poesia multimídia, com o intuito de desvendar como estão sendo criados novos procedimentos expressivos e em que medida eles podem ser identificados com reflexões teóricas anteriores acerca do texto literário impresso. Remete a questões ligadas à leitura dos diferentes tipos de signos e aos modos como eles se integram para a constituição dessas novíssimas linguagens híbridas em novos suportes.El artículo estudia la emergencia de nuevos paradigmas literarios, procurando reflejar acerca de las textualidades contemporáneas. Enfoca los hipertextos informatizados y la poesía multimedia, intentando desvendar cómo están siendo creados nuevos procedimientos expresivos y en qué medida ellos pueden ser identificados a reflexiones teóricas anteriores acerca del texto literario impreso. Remite a cuestiones ligadas a la lectura de los diferentes tipos de signos y a los modos cómo ellos se interaccionan para la constitución de los novísimos lenguajes híbridos en nuevos supuestos.This article investigates the emergence of new literary paradigms as it tries to understand new contemporary textualities. It analyses some hypertexts and multimedia poetry trying to trace how new expressive procedures are being created. How can these new languages be identified and what are their relations to previous theories which dealt with the literary printed text? This study approaches questions linked to the reading of different types of signs and the modes they function towards the fabrication of these new hybrid languages.

  2. De novo autoimmune hepatitis after liver transplantation.

    Lohse, Ansgar W; Weiler-Norman, Christina; Burdelski, Martin

    2007-10-01

    The Kings College group was the first to describe a clinical syndrome similar to autoimmune hepatitis in children and young adults transplanted for non-immune mediated liver diseases. They coined the term "de novo autoimmune hepatitis". Several other liver transplant centres confirmed this observation. Even though the condition is uncommon, patients with de novo AIH are now seen in most of the major transplant centres. The disease is usually characterized by features of acute hepatitis in otherwise stable transplant recipients. The most characteristic laboratory hallmark is a marked hypergammaglobulinaemia. Autoantibodies are common, mostly ANA. We described also a case of LKM1-positivity in a patients transplanted for Wilson's disease, however this patients did not develop clinical or histological features of AIH. Development of SLA/LP-autoantibodies is also not described. Therefore, serologically de novo AIH appears to correspond to type 1 AIH. Like classical AIH patients respond promptly to treatment with increased doses of prednisolone and azathioprine, while the calcineurin inhibitors cyclosporine or tacrolimus areof very limited value - which is not surprising, as almost all patients develop de novo AIH while receiving these drugs. Despite the good response to treatment, most patients remain a clinical challenge as complete stable remissions are uncommon and flares, relapses and chronic disease activity can often occur. Pathogenetically this syndrome is intriguing. It is not clear, if the immune response is directed against allo-antigens, neo-antigens in the liver, or self-antigens, possibly shared by donor and host cells. It is very likely that the inflammatory milieu due to alloreactive cells in the transplanted organ contribute to the disease process. Either leading to aberrant antigen presentation, or providing co-stimulatory signals leading to the breaking of self-tolerance. The development of this disease in the presence of treatment with calcineurin

  3. Low coverage sequencing of three echinoderm genomes: the brittle star Ophionereis fasciata, the sea star Patiriella regularis, and the sea cucumber Australostichopus mollis.

    Long, Kyle A; Nossa, Carlos W; Sewell, Mary A; Putnam, Nicholas H; Ryan, Joseph F

    2016-01-01

    There are five major extant groups of Echinodermata: Crinoidea (feather stars and sea lillies), Ophiuroidea (brittle stars and basket stars), Asteroidea (sea stars), Echinoidea (sea urchins, sea biscuits, and sand dollars), and Holothuroidea (sea cucumbers). These animals are known for their pentaradial symmetry as adults, unique water vascular system, mutable collagenous tissues, and endoskeletons of high magnesium calcite. To our knowledge, the only echinoderm species with a genome sequence available to date is Strongylocentrotus pupuratus (Echinoidea). The availability of additional echinoderm genome sequences is crucial for understanding the biology of these animals. Here we present assembled draft genomes of the brittle star Ophionereis fasciata, the sea star Patiriella regularis, and the sea cucumber Australostichopus mollis from Illumina sequence data with coverages of 12.5x, 22.5x, and 21.4x, respectively. These data provide a resource for mining gene superfamilies, identifying non-coding RNAs, confirming gene losses, and designing experimental constructs. They will be important comparative resources for future genomic studies in echinoderms.

  4. Mollie Lentaigne, the nurse who drew McIndoe's Guinea pigs: Exploring the role of a medical artist at the Queen Victoria Hospital, 1940-1945.

    Baldwin, Alexander J

    2018-04-16

    Mollie Lentaigne was a medical artist who worked at the Queen Victoria Hospital in East Grinstead during the Second World War alongside Archibald McIndoe and his dedicated team. She drew hundreds of medical illustrations for McIndoe and his fellow surgeons during the years between 1940 and 1945. Her illustrations depict the plastic surgery that was carried out in that hospital on the badly burnt RAF servicemen injured during the war that took place in the skies over Europe, which included many aircrew injured during the Battle of Britain. This project looks at the career of Lentaigne and her role within the surgical team in East Grinstead during that era and explores a number of Lentaigne's illustrations whilst providing context as to the procedures and patients depicted. An examination of Lentaigne's story, using an interview conducted by the author with the artist offers an alternative perspective with which to observe the events that unfolded in East Grinstead during that conflict. An analysis of these images shows the ability of this artist to portray relatively complex operations with a series of simple pencil or ink diagrams whilst also skilfully engaging the observer's sense of touch. The ability of a medical artist to be selective with her illustrations allowed them to provide clearer, less cluttered images that were preferred by McIndoe when recording the specific surgical procedures for use in the patient's medical records. Copyright © 2018 British Association of Plastic, Reconstructive and Aesthetic Surgeons. Published by Elsevier Ltd. All rights reserved.

  5. The development of hyaline-cell cartilage in the head of the black molly, Poecilia sphenops. Evidence for secondary cartilage in a teleost.

    Benjamin, M

    1989-01-01

    The development of hyaline-cell cartilage attached to membrane (dentary, maxilla, nasal, lacrimal and cleithrum) and cartilage (basioccipital) bones has been studied in the viviparous black molly, Poecilia sphenops. Intramembranous ossification commences before the first appearance of hyaline cells. As hyaline-cell cartilage is densely cellular and as that attached to the dentary, maxilla and cleithrum develops from the periosteum of these membrane bones, it must be regarded as secondary cartilage according to current concepts. It is also argued that the hyaline-cell cartilage attached to the perichondral bone of the basioccipital (a cartilage bone), could also be viewed as secondary. The status of the cartilage on the nasal and lacrimal bones is less clear, for it develops, at least in part, from mucochondroid (mucous connective) tissue. This is the first definitive report of secondary cartilage in any lower vertebrate. The tissue is therefore not restricted to birds and mammals as hitherto believed, and a multipotential periosteum must have arisen early in vertebrate evolution. Images Fig. 1 Fig. 6 Fig. 7 Fig. 8 Fig. 9 Fig. 10 Fig. 11 Fig. 12 Fig. 13 Fig. 14 PMID:2481666

  6. De Novo Construction of Redox Active Proteins.

    Moser, C C; Sheehan, M M; Ennist, N M; Kodali, G; Bialas, C; Englander, M T; Discher, B M; Dutton, P L

    2016-01-01

    Relatively simple principles can be used to plan and construct de novo proteins that bind redox cofactors and participate in a range of electron-transfer reactions analogous to those seen in natural oxidoreductase proteins. These designed redox proteins are called maquettes. Hydrophobic/hydrophilic binary patterning of heptad repeats of amino acids linked together in a single-chain self-assemble into 4-alpha-helix bundles. These bundles form a robust and adaptable frame for uncovering the default properties of protein embedded cofactors independent of the complexities introduced by generations of natural selection and allow us to better understand what factors can be exploited by man or nature to manipulate the physical chemical properties of these cofactors. Anchoring of redox cofactors such as hemes, light active tetrapyrroles, FeS clusters, and flavins by His and Cys residues allow cofactors to be placed at positions in which electron-tunneling rates between cofactors within or between proteins can be predicted in advance. The modularity of heptad repeat designs facilitates the construction of electron-transfer chains and novel combinations of redox cofactors and new redox cofactor assisted functions. Developing de novo designs that can support cofactor incorporation upon expression in a cell is needed to support a synthetic biology advance that integrates with natural bioenergetic pathways. © 2016 Elsevier Inc. All rights reserved.

  7. Estudo anatômico das espécies de Leguminosae comercializadas no estado do Pará como "angelim" An anatomic study of Leguminosae species in the State of Pará commercialized as "angelim"

    Gracialda Costa Ferreira

    2004-09-01

    Full Text Available A estrutura da madeira de sete espécies de Leguminosae comercializadas como "angelim", no estado do Pará, foi analisada quanto aos aspectos anatômicos através de cortes histológicos da madeira, nos sentidos transversal, tangencial e radial. Através deste estudo procurou-se determinar diferenças básicas entre as espécies comercializadas com a mesma denominação vernacular, a fim de auxiliar no processo de identificação anatômica das mesmas. Uma chave dicotômica foi elaborada para separar as espécies estudadas (Andira surinamensis, Dinizia excelsa, Hymenolobium excelsum, H. modestum, H. pulcherrimum, H. petraeum e Vatairea paraensis. Características de parênquima, raios e poros são muito úteis na separação das espécies estudadas em nível de gênero, porém em nível de espécie a separação é mais difícil. Para o agrupamento de espécies, é necessário que as características anatômicas das espécies sejam conhecidas para associadas a características morfológicas.The wood structure of seven commercialized species of Leguminosae as angelim, in the state of Pará, was analyzed by their anatomical aspects and through histological sections of the wood, in transversal, tangential and radial planes. This study was undertaken to determine basic differences among various species commercialized with the same vernacular denomination, in order to facilitate the process of their anatomical identification. A dichotomous key was elaborated to separate the species studied (Andira surinamensis, Dinizia excelsa, Hymenolobium excelsum, H. modestum, H. pulcherrimum, H. petraeum and Vatairea paraensis. Characteristics of parenchyma, rays and vessels are very useful in the separation of the species studied in the genus level, however in the species level the separation is more difficult. For the species grouping, it is necessary that the anatomical characteristics of the species are known for associates to the morphologic characteristics.

  8. Evaluación de la calidad del aceite de once semillas de leguminosas del desierto sonorense

    Ortega-Nieblas, M.

    1996-06-01

    Full Text Available In order to generate information that lead to an efficient and diversifícate use of the natural resources that the Sonoran Desert offers, as it is the great variety of Leguminosae or Fabaceae plants, oils from seeds or Prosopis chilensis, Prosopis velutina (mezquite, Cercidium floridium (palo azul, Cercidium praecox (palo de brea, Acacia constricta (vinorama, Acacia cymbyspina (chirahui, Acacia occidentalis (tesota, Acacia mcmurphy (tepehuaje, Desmanthus palmeri (mezquitillo, Caesalpinia caladenia (palo dorado, and Caesalpinia pumila (palo piojo were analyzed. The oils were extracted from each seed with hexane, and their physicochemical characteristics were evaluated. The oil content varied from 9 to 16% in the different seeds. Their indexes of acidity, peroxides and free fatty acid content were low and within the accepted values. Fatty acids separated by gas chromatography predominating indicate the oleic and linoleic. All analyzed crude oils were of good quality, comparable to commercial and oils of wild legume seeds from the same region.

    A fin de generar información que conduzca a un uso eficiente y diversificado de los recursos naturales que ofrece el Desierto Sonorense, como es la gran variedad de plantas de la familia Leguminosae ó Fabaceae, se analizaron los aceites de las semillas: Prosopis chilensis, Prosopis velutina (mezquite, (palo azul, Cercidium praecox (palo de brea, Acacia constricta (vinorama, Acacia cymbyspina (chirahui, Acacia occidentalis (tésota, Acacia mcmurphy (tepeguaje, Desmanthus palmeri (mezquitillo, Caesalpinia caladenia (palo dorado, y Caesalpinia pumila (palo piojo. Los aceites de cada semilla fueron extraídos con hexano, se evaluaron las características fisico-químicas de calidad y la cuantificación de ácidos grasos por cromatografía de gases. El contenido de

  9. Evaluación de abonos verdes en el sistema de producción maíz-leguminosas

    Prager M. Martin

    1989-06-01

    Full Text Available En la primera parte del ensayo, se estudió el comportamiento del peso de nódulos, peso fresco y peso seco de tres leguminosas (Crotalaria, Canavalia y Guandul a utilizar como abonos verdes y su efecto sobre sistemas de producción maíz-leguminosas (maíz-caupí, maíz-soya, maíz-frijol. Las variables consideradas (rendimiento, rendimiento equivalente de maíz, ingreso neto y tasa de retorno marginal mostraron el efecto positivo de esta práctica sobre esta forma de producción obteniéndose mejor respuesta de el sistema maíz-caupí. De los abonos verdes la crotalaria presentó el mejor efecto sobre los sistemas de producción. En la segunda parte del trabajo, se utilizó el sistema de producción de mejor comportamiento introduciendo al factor abono verde algunas modalidades de tratamiento, entre ellas efecto residual, adición de una segunda incorporación de los tres abonos verdes y efecto residual más la adición de abono químico. La consideración de las mismas variables usadas en la primera parte mostro mejores valores por la segunda incorporación de abono verde y la adición de abono químico en su orden, el efecto residual de los abonos permite obtener rendimientos superiores a los alcanzados por el testigo.This research was divided in two parts. The first studies the behavior of three legumes (Crotalaria, Canavalia and Cajanus as green manure, measuring weight nodules, green weight matter and dry weight matter of them, so measured the effect on three production systems: Maize- cowpea, Maize- soybean and Maize-bean. The indicators (yield, equivalent maize yields, net income and marginal return rate showed positive effect of green manure on this production systems too maize-cowpea system showed the best yields; Crotalaria was ,the best green manure. In second experimental stage maize- cowpea system was evaluated, using the same indicators and introducing new treatments related to green manure: its residual effects, addicional

  10. Factores del manejo para estabilizar la producción de biomasa con leguminosas en el trópico

    T. E. Ruiz

    2006-01-01

    Full Text Available Este material tiene como objetivo abundar acerca de aquellos factores del manejo que conduzcan a estabilizar la producción de biomasa en sistemas ganaderos en el trópico. Es obvio que los sistemas mejorados y bien manejados de pasturas de gramíneas y leguminosas, en cualquiera de sus alternativas, son opciones para lograr la sostenibilidad. Una concepción más amplia y profunda es la relativa a los estudios de pasturas mixtas; éstos, deben tener un enfoque más biológico por lo que, además de considerar el ambiente en el cual se desarrollan y crecen, hay que incluir la forma en que los componentes vegetales se manifiestan en las especies implicadas del agroecosistema. Aquí no podemos olvidar el efecto del animal. Los problemas asociados con la persistencia se reconocen cada vez más como una preocupación real. Los diversos factores que controlan la permanencia de las especies forrajeras se agrupan en aquellos que pueden ser manejados y controlados por el productor, así como en los que éste no puede intervenir. Es por ello que las producciones animales y de otro tipo, derivados de estos sistemas, varían positivamente en el tiempo, en la medida en que se va consolidando la relación suelo /planta /animal. De esta correspondencia no puede quedar excluido el papel interactuante y modificador del hombre con los elementos antes señalados. La producción de biomasa es una actividad multidisciplinaria; de ahí que el éxito de su funcionamiento esté condicionado al conocimiento de las interacciones entre sus componentes, así como entre éstos y el medio ambiente, lo cual permitirá la generación de estrategias de manejo acordes con la ecología que conduzcan a mejorar la productividad y la sostenibilidad del agroecosistema. Por tanto, la producción de biomasa constituye un elemento determinante en el éxito y la eficiencia de los sistemas con leguminosas.

  11. Antimicrobial peptide capsids of de novo design.

    De Santis, Emiliana; Alkassem, Hasan; Lamarre, Baptiste; Faruqui, Nilofar; Bella, Angelo; Noble, James E; Micale, Nicola; Ray, Santanu; Burns, Jonathan R; Yon, Alexander R; Hoogenboom, Bart W; Ryadnov, Maxim G

    2017-12-22

    The spread of bacterial resistance to antibiotics poses the need for antimicrobial discovery. With traditional search paradigms being exhausted, approaches that are altogether different from antibiotics may offer promising and creative solutions. Here, we introduce a de novo peptide topology that-by emulating the virus architecture-assembles into discrete antimicrobial capsids. Using the combination of high-resolution and real-time imaging, we demonstrate that these artificial capsids assemble as 20-nm hollow shells that attack bacterial membranes and upon landing on phospholipid bilayers instantaneously (seconds) convert into rapidly expanding pores causing membrane lysis (minutes). The designed capsids show broad antimicrobial activities, thus executing one primary function-they destroy bacteria on contact.

  12. De novo pathway-based biomarker identification

    Alcaraz, Nicolas; List, Markus; Batra, Richa

    2017-01-01

    in a large cohort of breast cancer samples from The Cancer Genome Atlas (TCGA) revealed that MGs are considerably more stable than SG models, while also providing valuable insight into the cancer hallmarks that drive them. In addition, when tested on an independent benchmark non-TCGA dataset, MG features......Gene expression profiles have been extensively discussed as an aid to guide the therapy by predicting disease outcome for the patients suffering from complex diseases, such as cancer. However, prediction models built upon single-gene (SG) features show poor stability and performance on independent...... on their molecular subtypes can provide a detailed view of the disease and lead to more personalized therapies. We propose and discuss a novel MG approach based on de novo pathways, which for the first time have been used as features in a multi-class setting to predict cancer subtypes. Comprehensive evaluation...

  13. ANATOMÍA, FÍSICA Y MECÁNICA DE LA MADERA DE Andira inermis (W. Wright DC. (Leguminosae

    C. Téllez-Sánchez

    2009-01-01

    Full Text Available En el presente estudio se determinaron las características anatómicas y las propiedades físicas y mecánicas de la madera de Andira inermis (W. Wright DC. (Leguminosae. El material de estudio se obtuvo de un sólo árbol colectado en el municipio de Arteaga, Michoacán, México. La descripción anatómica se basó en las recomendaciones de IAWA. Las propiedades físicas y mecánicas se efectuaron de acuerdo a la norma D 143-94 de la ASTM. La madera de A. inermis presenta brillo mediano, vetado pronunciado, textura media, hilo entrecruzado, porosidad difusa y pared celular muy gruesa. La densidad básica es muy alta y la contracción media. El ELP, MOR y MOE es alto, extremadamente alto y medio, respectivamente, en flexión estática. En compresión paralela a la fibra su ELP es alto, MOR extremadamente alto. ELP muy alto en compresión perpendicular a la fibra. Dureza Janka muy alta.

  14. Insect herbivores associated with an evergreen tree Goniorrhachis marginata Taub. (Leguminosae: Caesalpinioideae) in a tropical dry forest.

    Silva, J O; Neves, F S

    2014-08-01

    Goniorrhachis marginata Taub. (Leguminosae: Caesalpinioideae) is a tree species found in Brazilian tropical dry forests that retain their leaves during the dry season. That being, we addressed the following question: i) How do insect diversity (sap-sucking and chewing), leaf herbivory and defensive traits (tannin and leaf sclerophylly) vary on the evergreen tree species G. marginata between seasons? The abundance of sap-sucking insects was higher in the dry season than in the rainy season. However, we did not verify any difference in the species richness and abundance of chewing insects between seasons. Leaf herbivory was higher in the rainy season, whereas leaf sclerophylly was higher in the dry season. However, herbivory was not related to sclerophylly. Insect herbivores likely decrease their folivory activity during the dry season due to life history patterns or changes in behaviour, possibly entering diapause or inactivity during this period. Therefore, G. marginata acts as a likely keystone species, serving as a moist refuge for the insect fauna during the dry season in tropical dry forest, and the presence of this evergreen species is crucial to conservation strategies of this threatened ecosystem.

  15. Actividad antimicótica in vitro y metabolitos del aceite esencial de las hojas de Minthostachys Mollis (muña

    Carlos Cano

    2008-07-01

    Full Text Available Objetivos. Demostrar la actividad antimicótica in vitro y la elucidación de algunos de los metabolitos del aceite esencial de hojas de Minthostachys mollis (muña proveniente del distrito de Huacrapuquio (2700 msnm, Junín. Materiales y métodos. El aceite esencial se obtuvo por el método de destilación por arrastre de vapor de agua. Este fue sometido a análisis físico-químico y determinación de la composición química mediante cromatografía de gases. Mediante el método de agar en difusión se evaluó la inhibición del crecimiento fúngico de Candida albicans y también por el método de dilución en tubo para Trichophytun tonsurans, Trichophytun mentagrophytes, Microsporun canis. Resultados. Se encontraron los siguientes monoterpenos: pulegona, mentona, limoneno y mirceno. El aceite esencial de muña inhibió completamente el desarrollo de T. tonsurasn, T. mentagrophytes y M. canis con ambos métodos de evaluación y dosis, para C. albicans se logró un halo de inhibición de 30 mm para el aceite esencial al 100% y de 35 mm al 50%. Conclusiones. Se demostró la actividad antimicótica del aceite esencial de muña, probablemente por la acción de los monoterpenos encontrados.

  16. Necrotizing fasciitis of soft tissues. Diagnostic imaging findings and literature review; Le fascite necrotizzante dei tessuti molli. Ruolo della diagnostica per immagini e revisione della letteratura

    Parenti, G.C.; Marri, C. [Ospedale Civile S. Maria delle Croci, Ravenna (Italy). Servizio di Radiodiagnostica; Calandra, G. [Ospedale Civile S. Maria delle Croci, Ravenna (Italy). Unita' operativa di Pronto Soccorso; Morisi, C. [Ospedale Civile S. Maria delle Croci, Ravenna (Italy). Servizio di Anatomia Patologica; Zabberoni, W. [Ospedale Civile S. Maria delle Croci, Ravenna (Italy). Div. di Malattie Infettive, Gruppo di rilevamento dati sulle INPS-ASL

    2000-05-01

    maggio 1991 a febbraio 1998 sono giunti alla nostra osservazione 130 casi di infezioni necrotizzanti progressive dei tessuti molli; in 32 casi l'eta' era compresa fra 22 e 84 anni; la diagnosi istologica retrospettiva e' risultata quella della fascite necrotizzante. Le sedi interessate dal processo sono state: arti (26/32), regioni cervicale (5/32) e perineale (1/32). Diciannove pazienti (19/32) sono stati sottoposti d'urgenza a esame radiografico eseguito anche per lo studio dei tessuti molli. L'esame ecografico e' stato eseguito d'urgenza in tutti i 32 pazienti. La valutazione dei pazienti con sospetto di infezioni necrosanti progressive e' affidata di solito a un gruppo di operatori esperti in diagnostica ecografica dei tessuti molli perischeletrici. L'esame TC e' stato eseguito in 9 casi (9/32); a ognuno di questi pazienti e' stato somministrato mdc iodato per via endovenosa. Con gli esami ecografico ed eco color Doppler, nel sospetto di fascite necrotizzante, e' possibile offrire indicazioni utili e affidabili per il corretto e rapido orientamento diagnostico; in particolare tale metodica e' in grado di rilevare precocemente alterazioni al tessuto adiposo sottocutaneo (28/32), alla fascia (18/32) e al tessuto molecolare (15/32). E' stata riscontrata buona correlazione tra alterazione tissutale rilevata con l'esame ecografico e reperto istologico; l'ecografia non ha evidenziato alterazioni al tessuto adiposo sottocutaneo (3/32) e al tessuto molecolare (8/32) in 11 casi pur evidenti all'esame istologico. La TC con mdc puo' essere utile per la migliore definizione dell'estensione della malattia e per la dimostrazione di eventuali complicanze, soprattutto in sedi difficili da raggiungere con l'ecografia. Le probabilita' di guarigione per i pazienti affetti da fascite necrotizzante sono direttamente proporzionali alla precocita' della diagnosi e all

  17. Estudio comparativo del aceite esencial de Minthostachys mollis (Kunth) Griseb "Muña" de tres regiones peruanas por cromatografía de gases y espectrometría de masas

    Fuertes Ruitón, César M.; Munguía Chipana, Yolanda

    2014-01-01

    A Study of the chemical composition of the essential oil of Minthostachys mollis (Kunth) Griseb, has been done by means of chromatographic and spectronic methods, in order to determine the composition according to the place of selling. We found the following: in the essential oil from Tarma (Junín, región A. A. Cáceres): l-tetradecene (23,14%), 2S-transmenthona (23,00%) and pulegone (13,21%), in the essential oil from Huaraz (Ancash. Región Chavín): 2S-trans-menthona (41,48%), pulegone (16,02...

  18. Mimosoideae (Leguminosae do litoral paraense Mimosoideae (Leguminose on the coast of Pará

    Julio dos Santos de Sousa

    2009-01-01

    Full Text Available Este trabalho consiste no tratamento taxonômico de Mimosoideae nas restingas do litoral paraense, uma vez que estas são pouco conhecidas sob esse aspecto. Esse estudo abrangeu a análise do material proveniente de coletas e exsicatas dos herbários MG e IAN, além de literatura especializada. São apresentadas chave de identificação, descrições e ilustrações dos táxons, bem como dados adicionais sobre distribuição geográfica, comentários, período de floração e frutificação e hábitat das mesmas. O fruto foi o caráter de maior destaque na separação dos táxons. Os resultados evidenciaram a presença de sete espécies, três variedades e uma subespécie, distribuídas em seis gêneros. Inga thibaudiana subsp. thibaudiana e Mimosa candollei, são novos registros para o litoral do Pará. O gênero Inga Mill. foi o mais representativo com cinco espécies. Entada polystachya var. polystachya e principalmente Chloroleucon acacioides apresentaram distribuição mais ampla e a formação floresta de restinga foi o ecossistema que apresentou o maior número de espécie.This study deals with the taxonomic treatment of Mimosoideae on the coastal sandbanks of Pará, since they are poorly known under this aspect. That study includes the analysis of botanical material from new collections and specimens of the MG and IAN herbariums, besides that found in specialized literature. Are given identification key, descriptions, and illustrations of the taxa, as well as data concerning geographical distribution, additional comments, flowering and fructification period, and habitat of the species. The fruit has the quality of great prominence in the separation of taxa. The results pointed out the presence of seven species, three varieties and one subspecies, distributed in six genera. Inga thibaudiana subsp. thibaudiana e Mimosa candollei are new records for the sand coast of Pará. The genus Inga Mill. was the most representative with five species

  19. Los "intelectuales" y el Estado Novo

    Luís REIS TORGAL

    2010-02-01

    Full Text Available RESUMEN: El concepto de “intelectual” es difícil de definir y sin duda se debate constantemente. Sin embargo, es importante reflexionar sobre él a fin de comprender su significado y los problemas que implica. Sea como fuere, a un Estado autoritario “moderno” se le supone una única ideología que tiene que difundirse por medio de una propaganda bien organizada, proceso en el que los intelectuales desempeñan un papel significativo. El “Nuevo Estado” de Salazar encaja en esta categoría y sin duda el conocimiento acerca de sus “intelectuales” es fundamental. En este artículo, el objetivo es proporcionar algunos ejemplos interesantes de “intelectuales” o de simples “funcionarios políticos” con inclinación intelectual a fin de indicar el sentido y complejidad de un estudio con una dimensión distinta sobre este asunto. A este fin han sido seleccionadas tres personalidades responsables de la actividad ideológica y cultural de gran relieve en el Estado de Salazar: António Ferro, João Ameal y Costa Brochado. Palabras clave: Estado Novo; Authotitarianism; Salazar, António de Oliveira; Intellectuals; Ferro, António; Brochado, Idalino da Costa; Ameal, João. ABSTRACT: The concept of the “intellectual” is difficult to define and undoubtedly constantly debated. It is nevertheless important to reflect on it in order to understand its meaning and the problems involved with it. Be that as it may, a “modern” authoritarian State presumes a single ideology which has to be diffused by means of well-organised propaganda, in which process “intellectuals” play a significant role. Salazar’s “New State” fits this category and, undoubtedly, knowledge about its “intellectuals” is fundamental. The objective in this article is to provide some interesting examples of “intellectuals” or simple “political functionar- ies” with an intellectual bent so as to indicate the sense and complexity of a study of a

  20. Dieta consumida por bovinos em pastagens cultivadas e consorciadas com leguminosas, estabelecidas com e sem queima da vegetação secundária

    Andrea Krystina Vinente Guimaraes

    2010-12-01

    Full Text Available Avaliou-se a composição botânica da dieta em pastagens de capim marandú (B. brizantha e capim quicuio (B. humidicola consorciadas com leguminosas, em dois métodos de preparo de área: com e sem queima. Foram testadas três pastagens para cada experimento: 1. QB - B. humidicola + B. brizantha cv. Marandu. 2. QBAL - B. humidicola + B. brizantha consorciada com A. pintoi cv. Amarilo + L. leucocephala cv. Cunninghan. 3. QBAC - B. humidicola + B. brizantha consorciada com A. pintoi cv. Amarilo + C. Argentea (Cratylia. A composição botânica foi determinada usando a técnica da análise microhistologica de fezes. As coletas de fezes foram realizadas a cada dezoito dias.  O consumo de quicuio e de espécies da capoeira foram superiores na época seca e de braquiarão, na chuvosa. As percentagens de quicuio foram superiores no método com queima, as de braquiarão, no método mulch. As percentagens de braquiarão foram superiores nas pastagens de QB e QBAL e as de leguminosas, nas pastagens consorciadas com leguminosas. Foram encontradas 14 famílias e 23 espécies. O método de preparo de área infuenciou a composição botânica da dieta. As espécies da capoeira tiveram pequena participação na composição botânica da dieta dos animais.

  1. Estudos morfoanatômicos da semente e da plântula de espécies de Anileiras (Indigofera L., Leguminosae Morpho-anatomical studies of seeds and seedlings of wild indigo, "anileira", Indigofera- Leguminosae

    Juliana Villela Paulino

    2010-03-01

    Full Text Available O nome popular "anileira" designa Indigofera anil L., I. suffruticosa Mill. e I. truxillensis Kunth, muito semelhantes quanto à morfologia externa. Este trabalho teve por objetivo avaliar se caracteres da semente e plântula apresentavam valor diagnóstico para este grupo, já que tais caracteres têm sido muito utilizados na Taxonomia de Leguminosae. A superfície e morfoanatomia de sementes e cotilédones foram estudadas por microscopias eletrônica de varredura e de luz, e as etapas do desenvolvimento das plântulas descritas. Embora as plântulas sejam semelhantes, caracteres de sementes (tamanho, forma, ornamentação da superfície, forma do hilo e tamanho do embrião e cotilédones (forma, organização do parênquima lacunoso na nervura central e distribuição de metabólitos nos tecidos apresentaram valor diagnóstico para as espécies. I. anil distingue-se de I. suffruticosa por suas sementes maiores e cotilédones com borda acuminada. I. truxillensis caracteriza-se por apresentar sementes cilíndricas e cotilédones reniformes contendo gotas de óleo e alcalóides. Nossos dados, a morfologia externa dos frutos (curvos em I. anil e I. suffruticosa, e retos em I. truxillensis e, ainda, a anatomia foliar (células parenquimáticas grandes e fenólicas no floema de I. suffruticosa e sua ausência em I. anil sugerem que I. anil, I. suffruticosa e I. truxillensis não devem ser sinonimizadas.The common name "wild indigo" specifies Indigofera anil L., I. suffruticosa Mill. (legitimate name and I. truxillensis Kunth (legitimate name that are very similar due to their external morphology. This work analyzed diagnostic characteristics of seeds and seedlings of these species since such features are widely used in taxonomic approaches within Leguminosae. We studied surface features and morpho-anatomy of seeds and cotyledons with scanning electronic microscopy and light microscopy, and described seedling phases. Although seedlings are similar

  2. Diferenças no padrão da atividade alelopática em espécies da família Leguminosae Differences in allelopathic activity patterns in Leguminosae

    M. Mourão Júnior

    2010-01-01

    Full Text Available As inúmeras espécies de plantas que compõem a floresta amazônica podem representar excelente alternativa para fazer frente ao desafio de desenvolver a agricultura conforme as exigências da sociedade. Neste trabalho, procurou-se determinar e caracterizar o padrão de atividade alelopática em espécies da família Leguminosae, em função de variações de espécies, fonte de extratos e sensibilidade da planta receptora. Bioensaios de germinação de sementes e alongamento da radícula e do hipocótilo foram desenvolvidos em condições controladas. Os resultados indicam que as espécies estudadas não apresentaram padrão semelhante no tocante aos efeitos potenciais alelopáticos, havendo, entretanto, hierarquização no tocante à intensidade dos efeitos globais, sendo o potencial alelopático inibitório mais amplo e efetivo nas espécies Bauhinia guianensis, Bowdichia virgiloides, Parkia pendula e Platimenia reticulata. O potencial alelopático foi efetivo e mais restrito em Bauhinia macrostachya. O fator fração das plantas revelou diferenciação no padrão de atividade: para a maioria das espécies, as folhas foram a principal fonte de aleloquímicos, e para Bauhinia macrostachya e Inga edulis, a raiz. Em termos de padrão de respostas das espécies receptoras, o alongamento da radícula é mais sensível aos efeitos dos extratos, ficando o alongamento do hipocótilo como o de menor sensibilidade. Os efeitos dos extratos foram mais intensos sobre Mimosa pudica. Esses resultados também atribuem à floresta amazônica importância como fonte de compostos químicos de interesse para o homem, o que, em si, justifica sua preservação.Innumerous plant species in the Amazon forest may be an excellent alternative to meet society's demand for natural products. This work aimed to determine and characterize the pattern of allelopathic activity in species of the Leguminosae family, according to species variation, extract source, and receptor

  3. Icarus: visualizer for de novo assembly evaluation.

    Mikheenko, Alla; Valin, Gleb; Prjibelski, Andrey; Saveliev, Vladislav; Gurevich, Alexey

    2016-11-01

    : Data visualization plays an increasingly important role in NGS data analysis. With advances in both sequencing and computational technologies, it has become a new bottleneck in genomics studies. Indeed, evaluation of de novo genome assemblies is one of the areas that can benefit from the visualization. However, even though multiple quality assessment methods are now available, existing visualization tools are hardly suitable for this purpose. Here, we present Icarus-a novel genome visualizer for accurate assessment and analysis of genomic draft assemblies, which is based on the tool QUAST. Icarus can be used in studies where a related reference genome is available, as well as for non-model organisms. The tool is available online and as a standalone application. http://cab.spbu.ru/software/icarus CONTACT: aleksey.gurevich@spbu.ruSupplementary information: Supplementary data are available at Bioinformatics online. © The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

  4. [Diagnosis and management of de novo epilepsy].

    Louise, Tyvaert

    2018-03-01

    The diagnosis of de novo epilepsy is complex. An accurate diagnostic approach has to be followed based on specific key steps. Epileptic seizure or non-epileptic malaise: risk of diagnosis error around 20%. Facing a first unprovoked seizure, the practitioner has to know the risk factors specifically linked to an increase risk of seizure recurrence. In presence of these factors, an antiepileptic drug would be indicated. The first antiepileptic drug has to be highly selected according to the epilepsy type and causes but also to the patient characteristics (sex, age, comorbidities, associated drugs, profession, and way of life…) An exhaustive patient Education needs to support the first antiepileptic drug prescription: (sleep and nutritional advices, benefit of observance, antiepileptic drugs features and side effects, follow-up, prognosis…) A regular follow-up is essential to control the observance, tolerability and efficacy of the antiepileptic drug, and to control also the good acceptance of the disease. A systematic research of common comorbidities may be also performed. Electroencephalogram and antiepileptic drugs levels are unnecessary in the classical follow up of known epileptic patients (except specific cases). Copyright © 2017 Elsevier Masson SAS. All rights reserved.

  5. De novo origin of human protein-coding genes.

    Dong-Dong Wu

    2011-11-01

    Full Text Available The de novo origin of a new protein-coding gene from non-coding DNA is considered to be a very rare occurrence in genomes. Here we identify 60 new protein-coding genes that originated de novo on the human lineage since divergence from the chimpanzee. The functionality of these genes is supported by both transcriptional and proteomic evidence. RNA-seq data indicate that these genes have their highest expression levels in the cerebral cortex and testes, which might suggest that these genes contribute to phenotypic traits that are unique to humans, such as improved cognitive ability. Our results are inconsistent with the traditional view that the de novo origin of new genes is very rare, thus there should be greater appreciation of the importance of the de novo origination of genes.

  6. De Novo Origin of Human Protein-Coding Genes

    Wu, Dong-Dong; Irwin, David M.; Zhang, Ya-Ping

    2011-01-01

    The de novo origin of a new protein-coding gene from non-coding DNA is considered to be a very rare occurrence in genomes. Here we identify 60 new protein-coding genes that originated de novo on the human lineage since divergence from the chimpanzee. The functionality of these genes is supported by both transcriptional and proteomic evidence. RNA–seq data indicate that these genes have their highest expression levels in the cerebral cortex and testes, which might suggest that these genes contribute to phenotypic traits that are unique to humans, such as improved cognitive ability. Our results are inconsistent with the traditional view that the de novo origin of new genes is very rare, thus there should be greater appreciation of the importance of the de novo origination of genes. PMID:22102831

  7. Identifying wrong assemblies in de novo short read primary ...

    2016-08-05

    Aug 5, 2016 ... Most of these assemblies are done using some de novo short read assemblers and other related approaches. .... benchmarking projects like Assemblathon 1, Assemblathon ... from a large insert library (at least 1000 bases).

  8. Arginine de novo and nitric oxide production in disease states

    Luiking, Yvette C.; Ten Have, Gabriella A. M.; Wolfe, Robert R.; Deutz, Nicolaas E. P.

    2012-01-01

    Arginine is derived from dietary protein intake, body protein breakdown, or endogenous de novo arginine production. The latter may be linked to the availability of citrulline, which is the immediate precursor of arginine and limiting factor for de novo arginine production. Arginine metabolism is highly compartmentalized due to the expression of the enzymes involved in arginine metabolism in various organs. A small fraction of arginine enters the NO synthase (NOS) pathway. Tetrahydrobiopterin ...

  9. De Novo Collapsing Glomerulopathy in a Renal Allograft Recipient

    Kanodia K

    2008-01-01

    Full Text Available Collapsing glomerulopathy (CG, characterized histologically by segmental/global glomerular capillary collapse, podocyte hypertrophy and hypercellularity and tubulo-interstitial injury; is characterized clinically by massive proteinuria and rapid progressive renal failure. CG is known to recur in renal allograft and rarely de novo. We report de novo CG 3 years post-transplant in a patient who received renal allograft from haplo-identical type donor.

  10. Language and national identity in Novo Cinema Galego

    Brais ROMERO SUÁREZ

    2015-12-01

    Full Text Available The talk of town since its inception in 2010, the Cinema Novo Galego has been successful in all competitions and festivals that has been present. From the FIPRESCI prize in Cannes to the Best Emerging Director at Locarno, this new wave of cinema places Galicia in the world film stage. But does Novo Cinema Galego an accurate representation of Galicia? What's the role of Galicia in this movement?

  11. Producción y valor nutricional del cultivo de morera (Morus alba L. con intercalamiento de leguminosas

    María Judith Delgado

    2012-07-01

    Full Text Available Una de las principales preocupaciones en la alimentación animal es la búsqueda de alternativas rentables para el productor y eficientes desde el punto de vista nutricional para los animales. Para que el volumen de la producción de estos alimentos sea el adecuado, se han utilizado prácticas como las planteadas en la revolución verde, que incluyen el uso de fertilizantes nitrogenados químicos, lo que ha traído secuelas negativas sobre el medioambiente. En la búsqueda de nuevas alternativas nutricionales se encontraron algunos forrajes, como la morera (Morus alba L., que tiene un alto nivel de proteína, entre otras propiedades nutricionales; pero, alternativas nutricionales como ésta requieren fertilización nitrogenada en elevadas cantidades.Con el interés de generar alternativas amigables con el medioambiente y que además logren mantener o incrementar el volumen de producción y el valor nutricional de la morera, surgió la idea de estudiar la intersiembra de este arbusto con leguminosas, como arveja (Pisum sativum L., alfalfa (Medicago sativa L y fríjol (Phaseolus vulgaris L., analizando variables nutricionales y parámetros de crecimiento del cultivo de morera. Además, se trabajó con un grupo de fertilización nitrogenada y un grupo de control (sin modificación alguna del cultivo. Al finalizar el estudio se encontraron diferencias estadísticamente significativas (p<0.05 para la mayoría de parámetros, exceptuando la variable altura, que no presentó diferencias importantes (p>0.05.

  12. Emergencia y desarrollo inicial de cuatro leguminosas forrajeras arbóreas presentes en la altiplanicie de Maracaibo, Venezuela

    Maribel Ramírez

    Full Text Available El objetivo de la investigación fue evaluar el efecto de diferentes tratamientos pregerminativos, así como las características morfológicas de las plántulas emergidas en cuatro leguminosas forrajeras arbóreas: lara ruidosa (Albizia lebbeck, cují (Prosopis juliflora, samán (Samanea saman y carocaro (Enterolobium cyclocarpum, presentes en la altiplanicie de Maracaibo, estado Zulia, Venezuela. El diseño experimental fue de bloques al azar, con cuatro repeticiones. Los tratamientos aplicados fueron: escarificación con lija (EL, remojo en agua (RA e inmersión en agua caliente (IAC, en semillas con distintos tiempos de almacenamiento (TA. Se evaluó el porcentaje de emergencia (PE, la tasa de emergencia (TE, la altura de la plántula (AP, el largo de la raíz (LR, el número de hojas (NH, el número de nudos (NN y el grosor del tallo (GT. En lara ruidosa el tiempo del RA y la interacción entre la EL y la IAC presentaron diferencias significativas en el PE. En las semillas de cují, los efectos individuales del TA, el RA y la IAC mostraron diferencias en el PE. La EL influyó en el PE de las semillas de cují sin artejo, y en las de carocaro y samán. Se concluye que la EL en las semillas de lara ruidosa, cují sin artejo, carocaro y samán; así como la utilización de semillas de cují con artejo frescas o almacenadas durante tres meses y tratadas con agua caliente por cinco minutos permitieron incrementar la emergencia. Las plántulas mostraron un desarrollo normal y homogéneo.

  13. MORFOLOGIA DO FRUTO E DA SEMENTE DE TRÊS ESPÉCIES DE Senna Mill. (LEGUMINOSAE - CAESALPINIOIDEAE

    Ely Simone Cajueiro Gurgel

    2014-08-01

    Full Text Available O fruto característico de Leguminosae é o legume, entretanto há uma variabilidade de tipos na família. Este estudo objetivou descrever a morfologia dos frutos e das sementes de Senna obtusifolia (L. H.S.Irwin & Barneby, S. occidentalis (L. Link. e S. tapajozensis (Ducke H.S.Irwin & Barneby. Retirou-se, aleatoriamente, uma amostra constituída de 25 frutos e 25 sementes para a descrição. Dos frutos, registrou-se a morfologia geral, a classificação, a coloração, a textura, a consistência e o indumento do pericarpo. Os caracteres morfológicos das sementes analisadas foram: a externos: consistência, cor e textura da testa, forma das sementes, posição e forma do hilo e da micrópila; b internos: testa; endosperma; embrião quanto ao tipo; forma e cor. As espécies estudadas apresentaram frutos do tipo legume ou folículo, de forma linear e largamente linear, pericarpo seco, cartáceo e sublenhoso, glabro a olho nu, em tons castanhos. Semente obovada, suborbicular, elipsoidal com um lado reto ou irregularmente rômbico, testa em tons castanhos ou acinzentados, pleurograma completo, quando presente, hilo punctiforme e orbicular, embrião axial, foliáceo, eixo embrionário reto e oblíquo, plúmula rudimentar. As características do indumento do pericarpo e pleurograma possibilitaram a separação das espécies estudadas. Palavras-chave: Senna obtusifolia, S. occidentalis, S. tapajozensis, Cassieae, Cassiinae. DOI: http://dx.doi.org/10.18561/2179-5746/biotaamazonia.v4n2p80-86

  14. Produtividade do cafeeiro Mundo Novo enxertado e submetido à adubação verde antes e após recepa da lavoura Productivity of grafted coffee during intercropping with five leguminous species in the western region of São Paulo State, Brazil

    Edison Martins Paulo

    2006-01-01

    Full Text Available Estudaram-se a produção e o crescimento do cafeeiro Mundo Novo (Coffea arabica L. enxertado sobre o Apoatã IAC 2258 (Coffea canephora Pierre ex Froehner submetido à adubação verde com as seguintes espécies leguminosas: crotalária espectábilis (Crotalaria spectabilis Roth., crotalária júncea (Crotalaria juncea L., guandu [Cajanus cajan (L. Millsp.], mucuna anã (Stizolobium deeringeanum Bort. e soja IAC 9 [Glycine max (L. Merril] e um tratamento testemunha sem plantas leguminosas. As leguminosas foram semeadas a 50 cm da projeção da copa dos cafeeiros e incorporadas no florescimento. O experimento foi desenvolvido no Pólo Regional de Desenvolvimento Tecnológico dos Agronegócios da Alta Paulista, em Adamantina, no período de 1989 a 1995. Adotou-se o delineamento estatístico de blocos ao acaso com seis tratamentos e cinco repetições. Os adubos verdes crotalária espectábilis, crotalária júncea, mucuna anã e soja, durante o período experimental, e a crotalária espectábilis após a recepa, não diminuíram a produção do cafeeiro. O guandu, embora tenha aumentado o teor de matéria orgânica do solo, foi a única leguminosa que diminuiu a produção e o diâmetro do caule dos cafeeiros. O guandu e a crotalária júncea, respectivamente, produziram as maiores quantidades de fitomassa seca. A produção do café se correlacionou inversamente com a fitomassa seca das leguminosas e positivamente com altura e diâmetro do caule do cafeeiro.Yield of arabica coffee (Coffea arabica of grafted onto robusta coffee (Coffea canephora Pierre ex Froehner Apoatã IAC 2258 was evaluated during six years of intercropping with five leguminous species: sunn hemp (Crotalaria juncea L., Crotalaria spectabilis Roth., dwarf velvet bean (Stizolobium deeringeanum Bort., soybean Glycine max (L. Merryl] and pigeon pea [Cajanus cajan (L. Millsp.] in the Western region of São Paulo State, Brazil, from 1989 to 1995. Leguminous species were sown 50 cm

  15. Clinicopathologic factors associated with de novo metastatic breast cancer.

    Shen, Tiansheng; Siegal, Gene P; Wei, Shi

    2016-12-01

    While breast cancers with distant metastasis at presentation (de novo metastasis) harbor significantly inferior clinical outcomes, there have been limited studies analyzing the clinicopathologic characteristics in this subset of patients. In this study, we analyzed 6126 breast cancers diagnosed between 1998 and 2013 to identify factors associated with de novo metastatic breast cancer. When compared to patients without metastasis at presentation, race, histologic grade, estrogen/progesterone receptor (ER/PR) and HER2 statuses were significantly associated with de novo metastasis in the entire cohort, whereas age, histologic grade, PR and HER2 status were the significant parameters in the subset of patients with locally advanced breast cancer (Stage IIB/III). The patients with de novo metastatic breast cancer had a significant older mean age and a lower proportion of HER2-positive tumors when compared to those with metastatic recurrence. Further, the HER2-rich subtype demonstrated a drastically higher incidence of de novo metastasis when compared to the luminal and triple-negative breast cancers in the entire cohort [odds ratio (OR)=5.68 and 2.27, respectively] and in the patients with locally advanced disease (OR=4.02 and 2.12, respectively), whereas no significant difference was seen between de novo metastatic cancers and those with metastatic recurrence. Moreover, the luminal and HER2-rich subtypes showed bone-seeking (OR=1.92) and liver-homing (OR=2.99) characteristics, respectively, for the sites of de novo metastasis, while the latter was not observed in those with metastatic recurrence. Our data suggest that an algorithm incorporating clinicopathologic factors, especially histologic grade and receptor profile, remains of significant benefit during decision making in newly diagnosed breast cancer in the pursuit of precision medicine. Copyright © 2016 Elsevier GmbH. All rights reserved.

  16. NovoPen Echo® insulin delivery device

    Hyllested-Winge J

    2016-01-01

    Full Text Available Jacob Hyllested-Winge,1 Thomas Sparre,2 Line Kynemund Pedersen2 1Novo Nordisk Pharma Ltd, Tokyo, Japan; 2Novo Nordisk A/S, Søborg, Denmark Abstract: The introduction of insulin pen devices has provided easier, well-tolerated, and more convenient treatment regimens for patients with diabetes mellitus. When compared with vial and syringe regimens, insulin pens offer a greater clinical efficacy, improved quality of life, and increased dosing accuracy, particularly at low doses. The portable and discreet nature of pen devices reduces the burden on the patient, facilitates adherence, and subsequently contributes to the improvement in glycemic control. NovoPen Echo® is one of the latest members of the NovoPen® family that has been specifically designed for the pediatric population and is the first to combine half-unit increment (=0.5 U of insulin dosing with a simple memory function. The half-unit increment dosing amendments and accurate injection of 0.5 U of insulin are particularly beneficial for children (and insulin-sensitive adults/elders, who often require small insulin doses. The memory function can be used to record the time and amount of the last dose, reducing the fear of double dosing or missing a dose. The memory function also provides parents with extra confidence and security that their child is taking insulin at the correct doses and times. NovoPen Echo is a lightweight, durable insulin delivery pen; it is available in two different colors, which may help to distinguish between different types of insulin, providing more confidence for both users and caregivers. Studies have demonstrated a high level of patient satisfaction, with 80% of users preferring NovoPen Echo to other pediatric insulin pens. Keywords: NovoPen Echo®, memory function, half-unit increment dosing, adherence, children, adolescents 

  17. De novo status epilepticus with isolated aphasia.

    Flügel, Dominique; Kim, Olaf Chan-Hi; Felbecker, Ansgar; Tettenborn, Barbara

    2015-08-01

    Sudden onset of aphasia is usually due to stroke. Rapid diagnostic workup is necessary if reperfusion therapy is considered. Ictal aphasia is a rare condition but has to be excluded. Perfusion imaging may differentiate acute ischemia from other causes. In dubious cases, EEG is required but is time-consuming and laborious. We report a case where we considered de novo status epilepticus as a cause of aphasia without any lesion even at follow-up. A 62-year-old right-handed woman presented to the emergency department after nurses found her aphasic. She had undergone operative treatment of varicosis 3 days earlier. Apart from hypertension and obesity, no cardiovascular risk factors and no intake of medication other than paracetamol were reported. Neurological examination revealed global aphasia and right pronation in the upper extremity position test. Computed tomography with angiography and perfusion showed no abnormalities. Electroencephalogram performed after the CT scan showed left-sided slowing with high-voltage rhythmic 2/s delta waves but no clear ictal pattern. Intravenous lorazepam did improve EEG slightly, while aphasia did not change. Lumbar puncture was performed which likely excluded encephalitis. Magnetic resonance imaging showed cortical pathological diffusion imaging (restriction) and cortical hyperperfusion in the left parietal region. Intravenous anticonvulsant therapy under continuous EEG resolved neurological symptoms. The patient was kept on anticonvulsant therapy. Magnetic resonance imaging after 6 months showed no abnormalities along with no clinical abnormalities. Magnetic resonance imaging findings were only subtle, and EEG was without clear ictal pattern, so the diagnosis of aphasic status remains with some uncertainty. However, status epilepticus can mimic stroke symptoms and has to be considered in patients with aphasia even when no previous stroke or structural lesions are detectable and EEG shows no epileptic discharges. Epileptic origin is

  18. Biophysical characterization of a de novo elastin

    Greenland, Kelly Nicole

    Natural human elastin is found in tissue such as the lungs, arteries, and skin. This protein is formed at birth with no mechanism present to repair or supplement the initial quantity formed. As a result, the functionality and durability of elastin's elasticity is critically important. To date, the mechanics of this ability to stretch and recoil is not fully understood. This study utilizes de novo protein design to create a small library of simplistic versions of elastin-like proteins, demonstrate the elastin-like proteins, maintain elastin's functionality, and inquire into its structure using solution nuclear magnetic resonance (NMR). Elastin is formed from cross-linked tropoelastin. Therefore, the first generation of designed proteins consisted of one protein that utilized homogony of interspecies tropoelastin by using three common domains, two hydrophobic and one cross-linking domains. Basic modifications were made to open the hydrophobic region and also to make the protein easier to purify and characterize. The designed protein maintained its functionality, self-aggregating as the temperature increased. Uniquely, the protein remained self-aggregated as the temperature returned below the critical transition temperature. Self-aggregation was additionally induced by increasing salt concentrations and by modifying the pH. The protein appeared to have little secondary structure when studied with solution NMR. These results fueled a second generation of designed elastin-like proteins. This generation contained variations designed to study the cross-linking domain, one specific hydrophobic domain, and the effect of the length of the elastin-like protein. The cross-linking domain in one variation has been significantly modified while the flanking hydrophobic domains have remained unchanged. This characterization of this protein will answer questions regarding the specificity of the homologous nature of the cross-linking domain of tropoelastin across species. A second

  19. Antinoceptive and Anti-inflammatory Activities of the Ethanolic Extract, Fractions and Flavones Isolated from Mimosa tenuiflora (Willd. Poir (Leguminosae.

    Mariluze P Cruz

    Full Text Available The bark of Mimosa tenuiflora (Willd. Poiret (Leguminosae family, popularly known as "jurema preta" in Brazil, is used by the population of Contendas of Sincorá (Bahia State, Brazil for the treatment of coughs and wound healing. Thus, the aim of this study was to evaluate the antinociceptive and anti-inflammatory activities of the bark ethanol extract (EEMT and solvent soluble fractions (hexane-H, DCM-D, EtOAc-E and BuOH-B of the extract in vivo. Additionally, we synthesized 5,7-dihidroxy-4'-methoxyflavanone (isosakuranetin and isolated the compound sakuranetin, and both compounds were also tested. The anti-inflammatory and antinociceptive assays performed were: writhing test; nociception induced by intraplantar formalin injection; leukocyte recruitment to the peritoneal cavity; evaluation of vascular permeability (Evans blue test; and evaluation of mechanical hypernociception (von Frey test. Production of TNF-α, IL-10, myeloperoxidase and the expression of ICAM-1 were also evaluated. Statistical analysis was performed by one-way ANOVA followed by the Bonferroni post-test (n = 8, with P < 0.05. The EEMT showed antinociceptive activities in writhing test (100-200 mg/kg, in the second phase of the formalin test (50-200 mg/kg, and in mechanical hypernociception (100 mg/kg. EEMT showed an anti-inflammatory effect by reducing neutrophil migration to the peritoneal cavity and in the plantar tissue detected by the reduction of myeloperoxidase activity (100 mg/kg, reduction of IL-10 levels and expression of ICAM-1 in the peritoneal exudate and the mesentery (100 mg/kg, respectively. The four soluble EEMT fractions showed good results in tests for antinociceptive (H, D, E, B and anti-inflammation (H, D, E. Only sakuranetin showed reduction of the writhing and neutrophil migration (200 mg/kg. Thus, the EEMT and soluble fractions of M. tenuiflora bark demonstrated great antinociceptive and anti-inflammatory activities, as also sakuranetin. More studies

  20. Bilobate leaves of Bauhinia (Leguminosae, Caesalpinioideae, Cercideae) from the middle Miocene of Fujian Province, southeastern China and their biogeographic implications.

    Lin, Yanxiang; Wong, William Oki; Shi, Gongle; Shen, Si; Li, Zhenyu

    2015-11-16

    Morphological and molecular phylogenetic studies suggest that the pantropical genus Bauhinia L. s.l. (Bauhiniinae, Cercideae, Leguminosae) is paraphyletic and may as well be subdivided into nine genera, including Bauhinia L. s.s. and its allies. Their leaves are usually characteristic bilobate and are thus easily recognized in the fossil record. This provides the opportunity to understand the early evolution, diversification, and biogeographic history of orchid trees from an historical perspective under the framework of morphological and molecular studies. The taxonomy, distribution, and leaf architecture of Bauhinia and its allies across the world are summarized in detail, which formed the basis for classifying the bilobate leaf fossils and evaluating the fossil record and biogeography of Bauhinia. Two species of Bauhinia are described from the middle Miocene Fotan Group of Fujian Province, southeastern China. Bauhinia ungulatoides sp. nov. is characterized by shallowly to moderately bilobate, pulvinate leaves with shallowly cordate bases and acute apices on each lobe, as well as paracytic stomatal complexes. Bauhinia fotana F.M.B. Jacques et al. emend. possesses moderately bilobate, pulvinate leaves with moderately to deeply cordate bases and acute or slightly obtuse apices on each lobe. Bilobate leaf fossils Bauhinia ungulatoides and B. fotana together with other late Paleogene - early Neogene Chinese record of the genus suggest that Bauhinia had been diverse in South China by the late Paleogene. Their great similarities to some species from South America and South Asia respectively imply that Bauhinia might have undergone extensive dispersals and diversification during or before the Miocene. The fossil record, extant species diversity, as well as molecular phylogenetic analyses demonstrate that the Bauhiniinae might have originated in the Paleogene of low-latitudes along the eastern Tethys Seaway. They dispersed southwards into Africa, migrated from Eurasia to

  1. Multiple Continental Radiations and Correlates of Diversification in Lupinus (Leguminosae): Testing for Key Innovation with Incomplete Taxon Sampling

    Drummond, Christopher S.; Eastwood, Ruth J.; Miotto, Silvia T. S.; Hughes, Colin E.

    2012-01-01

    Replicate radiations provide powerful comparative systems to address questions about the interplay between opportunity and innovation in driving episodes of diversification and the factors limiting their subsequent progression. However, such systems have been rarely documented at intercontinental scales. Here, we evaluate the hypothesis of multiple radiations in the genus Lupinus (Leguminosae), which exhibits some of the highest known rates of net diversification in plants. Given that incomplete taxon sampling, background extinction, and lineage-specific variation in diversification rates can confound macroevolutionary inferences regarding the timing and mechanisms of cladogenesis, we used Bayesian relaxed clock phylogenetic analyses as well as MEDUSA and BiSSE birth–death likelihood models of diversification, to evaluate the evolutionary patterns of lineage accumulation in Lupinus. We identified 3 significant shifts to increased rates of net diversification (r) relative to background levels in the genus (r = 0.18–0.48 lineages/myr). The primary shift occurred approximately 4.6 Ma (r = 0.48–1.76) in the montane regions of western North America, followed by a secondary shift approximately 2.7 Ma (r = 0.89–3.33) associated with range expansion and diversification of allopatrically distributed sister clades in the Mexican highlands and Andes. We also recovered evidence for a third independent shift approximately 6.5 Ma at the base of a lower elevation eastern South American grassland and campo rupestre clade (r = 0.36–1.33). Bayesian ancestral state reconstructions and BiSSE likelihood analyses of correlated diversification indicated that increased rates of speciation are strongly associated with the derived evolution of perennial life history and invasion of montane ecosystems. Although we currently lack hard evidence for “replicate adaptive radiations” in the sense of convergent morphological and ecological trajectories among species in different

  2. Caracterización fisicoquímica de los aceites crudos de algunas semillas de leguminosas del desierto sonorense

    Ortega-Nieblas, M.

    1995-02-01

    Full Text Available The Sonoran desert has a great variety of nutritional native plants, mainly from the leguminous family. Although in ancient times their products were used as food by native Americans, there is little information about their potential as a food source. For this reason, oils from the following seeds were studied: Acacia famesiana (huizache, Mimosa grahamii (gatuña, Cercidium microphyilium (palo verde 1, Cercidium sonorae (brea, Parkinsonia aculeata (palo verde 2, Olneya Tesota (palo fierro and Prosopis juliflora (mezquite.
    Oils were extracted from the seeds with hexane, and contents ranged from 8.5 to 23.5 %. The physicochemical studies showed mostly unsaturated oils, as demonstrated by the iodine index, (101-147 units. Indexes of acidity, peroxides and free fatty acids were low and within the accepted values. Fatty acids were separated and quantified by gas chromatography. Linoleic and oleic acids were found to predominate. All extracted crude oils were of good quality, comparable to those from soybean, com, sunflower and carthamus.

    El desierto de Sonora cuenta con una gran variedad de plantas silvestres principalmente de la familia leguminosae de las cuales se tiene poca información acerca de su potencial como fuente nutricional. Por lo que se estudiaron los aceites de las semillas: Acacia famesiana (huizache, Mimosa grahamii (gatuña, Cercidium microphyilium (palo verde 1, Cercidium sonorae (brea, Parkinsonia aculeata (palo verde 2, Olneya Tesota (palo fierro y Prosopis juliflora (mezquite.
    Los aceites de cada semilla se extrajeron con hexano, obteniéndose de 8.5 a 23.5 %. Estos mostraron un alto grado de insaturación reflejado en los índices de lodo, de 101 a 147. Los índices de acidez, peróxidos y ácidos grasos libres fueron bajos y dentro de los valores aceptables. Al cuantificar los ácidos grasos por

  3. Interacción micorriza vesiculo-arbuscular, Rhizobium leguminosa en un oxisol de los Llanos Orientales de Colombia

    Satizabal E. Jorge H.

    1987-03-01

    Full Text Available En los dos primeros trabajos (la y lb, se evaluó la interacción entre cepas seleccionadas de Rhizobium (apropiadas para la leguminosa forrajera tropical Centrosema macrocarpum y especies (Entrophospora colombiana, Acaulospora longula, Glomus manihotis de micorriza vesiculo arbuscular (MVA, en un suelo esterilizado, fijador de P. Los experimentos se diferenciaron por las fuentes de P utilizadas. Por su mayor producción de materia seca, absorción de minerales, nodulación y infección por MVA, se destacaron las plantas inoculadas con cuales quiera de las cepas de FIlizobiumy Glomus manihotis (Experimento la o Acaulospora longula (Experimento lb. En la tercera investigación (Experimento II, se evalúo en Centrosema la interacción MVA, Rhizobiumo N-químico (niveles equivalentes a 0, 30,55, 105,0 + Rhiz. y 30 + Rhiz. kg N ha-1 y dosis de P (0, 20, 40 y 80 kg ha-1. Es aconsejable aplicar pequeñas dosis (30 kg ha-1 de N al momento de la siembra e inocular con Rhizobium. Plantas inoculadas con MVA presentaron su óptimo crecimiento con 40 kg P ha-1. Dosis de 80 kg P ha-1 favoreció la eficiencia de la bacteria más no la del hongo.In the first two works (la and lb we evaluated the interation between selected stumps of Rhizobium (appropiate for the tropical forage legumes Centrosema macrocarpum and species (Entrophospora colombiana, Acaulospora longula, Glomus manihotis of vesicular-arbuscular mycorrhiza (MVA, in a sterelize soil fixer of P. The two experiments are different because we used different P sources. For the best production of dry matter, absorption of minerals, nodulation and infection for MVA; rebounded the plants with the inoculation with any of the Rhizobium´s stumps and Glomus manihotis (Experiment la of Acaulospora longula (Experiment lb. In the third investigation (Experiment II we evaluated in Centrosema the interaction MVA. Rhizobium and chemical N (levels equivalent to 0,30. 55, 105, O + Rhizobium and 30 + Rhizobium kg N ha

  4. Purine biosynthesis de novo by lymphocytes in gout

    Kamoun, P.; Chanard, J.; Brami, M.; Funck-Brentano, J.L.

    1978-01-01

    A method of measurement in vitro of purine biosynthesis de novo in human circulating blood lymphocytes is proposed. The rate of early reactions of purine biosynthesis de novo was determined by the incorporation of [ 14 C]formate into N-formyl glycinamide ribonucleotide when the subsequent reactions of the metabolic pathway were completely inhibited by the antibiotic azaserine. Synthesis of 14 C-labelled N-formyl glycinamide ribonucleotide by lymphocytes was measured in healthy control subjects and patients with primary gout or hyperuricaemia secondary to renal failure, with or without allopurinol therapy. The average synthesis was higher in gouty patients without therapy than in control subjects, but the values contained overlap the normal range. In secondary hyperuricaemia the synthesis was at same value as in control subjects. These results are in agreement with the inconstant acceleration of purine biosynthesis de novo in gouty patients as seen by others with measurement of [ 14 C]glycine incorporation into urinary uric acid. (author)

  5. Bananeiras consorciadas com leguminosas herbáceas perenes utilizadas como coberturas vivas Banana plants intercropped with perennial herbaceous legumes used as living mulches

    José Antonio Azevedo Espindola

    2006-03-01

    Full Text Available O objetivo deste trabalho foi avaliar a produção de bananeiras consorciadas com as leguminosas herbáceas perenes - amendoim forrageiro (Arachis pintoi, cudzu tropical (Pueraria phaseoloides e siratro (Macroptilium atropurpureum. Os tratamentos-controle consistiram em vegetação espontânea com predomínio de Panicum maximum, e vegetação espontânea com adubação nitrogenada das bananeiras. Também foi avaliado o desenvolvimento vegetativo das bananeiras. Entre as coberturas avaliadas, a vegetação espontânea e o cudzu tropical apresentaram produções maiores de biomassa; o cudzu tropical proporcionou valores maiores para quantidades de N acumulado e derivado da fixação biológica. As leguminosas amendoim forrageiro, cudzu tropical e siratro proporcionaram desenvolvimento vegetativo mais rápido nas bananeiras consorciadas. Cudzu tropical e siratro promoveram maiores valores de peso dos cachos e das pencas. O uso das leguminosas avaliadas resulta em aumento da porcentagem de cachos colhidos e redução do tempo de colheita, além de proporcionar maior produtividade, quando comparado ao uso de vegetação espontânea.The objective of this work was to evaluate the yield of banana plants intercropped with the perennial herbaceous legumes forage groundnut (Arachis pintoi, tropical kudzu (Pueraria phaseoloides and siratro (Macroptilium atropurpureum. The control treatments were spontaneous vegetation (mainly Panicum maximum and spontaneous vegetation plus nitrogen fertilizer application to banana plants. The vegetative growth of banana plants was also evaluated. Among the treatments, spontaneous vegetation and tropical kudzu promoted the highest dry matter productions; tropical kudzu had the highest amounts of accumulated and fixed N. Forage groundnut, tropical kudzu and siratro promoted the fastest vegetative growth for banana plants in this intercropped system. Tropical kudzu and siratro promoted the highest values for bunch weight and

  6. Differences between the composting process of the bovine manure mixture-leguminosae waste with and without stabilizing agent; Diferencias en el proceso de compostaje de estiercol de vacuno-residuo de leguminosa con y sin la aplicacion de un agente estabilizante

    Escobedo Monge, M. A.; Lopez Robles, J.; Gonzalez Carcedo, S.; Johson Troeth, J.

    2001-07-01

    The purpose of the present work is to investigate the differences in the compost process of the bovine manure mixture leguminosae waste with and without the application of a stabilizing agent (CaCO3), in two periods of the year. The physical-chemistry, chemical and microbiological parameters, were measured during the different stages of the process. this work has shown that the technique was economical and a solution environmentally acceptable for the treatment of these residuals. We achieved a product with a better C/N ratio, in shorter time and with a better content in organic and nutrition matter. (Author) 42 refs.

  7. Airline Maintenance Manpower Optimization from the De Novo Perspective

    Liou, James J. H.; Tzeng, Gwo-Hshiung

    Human resource management (HRM) is an important issue for today’s competitive airline marketing. In this paper, we discuss a multi-objective model designed from the De Novo perspective to help airlines optimize their maintenance manpower portfolio. The effectiveness of the model and solution algorithm is demonstrated in an empirical study of the optimization of the human resources needed for airline line maintenance. Both De Novo and traditional multiple objective programming (MOP) methods are analyzed. A comparison of the results with those of traditional MOP indicates that the proposed model and solution algorithm does provide better performance and an improved human resource portfolio.

  8. Persistent hyperthyroidism and de novo Graves' ophthalmopathy after total thyroidectomy.

    Tay, Wei Lin; Loh, Wann Jia; Lee, Lianne Ai Ling; Chng, Chiaw Ling

    2017-01-01

    We report a patient with Graves' disease who remained persistently hyperthyroid after a total thyroidectomy and also developed de novo Graves' ophthalmopathy 5 months after surgery. She was subsequently found to have a mature cystic teratoma containing struma ovarii after undergoing a total hysterectomy and salpingo-oophorectomy for an incidental ovarian lesion. It is important to investigate for other causes of primary hyperthyroidism when thyrotoxicosis persists after total thyroidectomy.TSH receptor antibody may persist after total thyroidectomy and may potentially contribute to the development of de novo Graves' ophthalmopathy.

  9. Demanda dos principais metais e novos materiais : analise de tendencias

    Wilson Trigueiro de Sousa

    1990-01-01

    Resumo: Neste trabalho são analisadas algumas tendências na área de novos materiais na tentativa de obter um melhor entendimento das repercussões das atuais inovações tecnológicas para o setor mineral. Inicialmente são revisados os principais estudos sobre as mudanças ocorridas por volta de 1972/74 no comportamento da demanda dos metais mais importantes. Entre as possíveis causas, está o progresso técnico, que tornou possível o surgimento de novos materiais e o aperfeiçoamento de outros em us...

  10. Crotalaria incana l. and leucaena leucocephala lam. (leguminosae): toxicity indicator species of petroleum hydrocarbons in soil; Crotalaria incana l. y leucaena leucocephala lam. (leguminosae): especies indicadoras de toxicidad por hidrocarburos de petroleo en el suelo

    Vazquez Luna, Dinora; Castellan Estrada, Mepivoseth; Rivera Cruz, Maria del C.; Ortiz Ceballos, Angel I.; Izquierdo R., Francisco [Colegio de Postgraduados, Campus Montecillo, Montecillo, Estado de Mexico (Mexico)]. E-mail: dinovaz@colpos.mx

    2010-07-01

    This study assesses the toxic effects produced by a Gleysol molic soil contaminated with crude oil on seedlings of two species of legumes. A phytotoxic impact index (IIF) was generated, which includes five parameters measured by relative rates of impact (IRIF{sub (x)}) for variables; emergency, height, root length, aboveground biomass and root biomass. Bioassays were conducted under a completely randomized design with three replications under semi-controlled conditions, to assess the sensitivity of Leucaena leucocephala and Crotalaria incana at different concentrations of TPH (total petroleum hydrocarbons). Effects were highly significant (P {<=} 0.01) with increasing concentrations of HTP in substrate. The emergence of L. leucocephala was 29 % lower with 80 000 mgkg{sup -1} HTP, while C. incana decreased 30 % with 32 000 mgkg{sup -1} TPH respect to control. Both species showed a five-day delay in the emergence of seedlings when exposed to high levels of TPH. A significant decrease in the accumulation of dry matter (DM) at concentrations above 20 000 mgkg{sup -1} TPH was observed in both species. The respective IIF declined of 50 % with 80 000 and 25 000 mgkg{sup -1} TPH, but L. leucocephala had no significant effect with 10 000 mgkg{sup -1} TPH. Finally, the EC50 in L. leucocephala, is presented with 80 000 mgkg{sup -1} TPH whereas in C. incana this parameter is noted from 25 000 mgkg{sup -1} TPH. [Spanish] En este estudio se evaluaron los efectos toxicos que produce un suelo Gleysol molico contaminado con petroleo crudo, sobre plantulas de dos especies de leguminosas. Para ello se genero un indice de impacto fitotoxico (IIF) que integra cinco parametros, medidos a traves de indices relativos de impacto (IRIF{sub (x)}) para las variables emergencia, altura, longitud radicular, biomasa aerea y biomasa radicular. Los bioensayos se realizaron bajo un diseno completamente al azar, con tres repeticiones, en condiciones semicontroladas, para evaluar la sensibilidad de

  11. Sobre las causas ontogénicas de la productividad diferencial de semillas en la especie anficárpica Trifolium polymorphum (Leguminosae On the causes of the differential seed production in the anficarpic species Trifolium polymorphum (Leguminosae

    Gabriela Speroni

    2010-06-01

    Full Text Available Trifolium polymorphum es una leguminosa de pradera con buena adaptación y persistencia en este tipo de vegetación. Combina diferentes estrategias reproductivas como la reproducción vegetativa por estolones y la reproducción por semillas producidas en dos tipos de frutos y flores, subterráneas y aéreas. Las subterráneas son cleistógamas y las aéreas son casmógamas. Empíricamente se ha detectado mayor formación de semillas en los frutos subterráneos que en los aéreos. En el presente trabajo se realizan estudios embriológicos y de desarrollo de semillas en ambos tipos de flores para dilucidar si existen causas ontogenéticas que determinan la productividad diferencial de semillas en ambos tipos de frutos. No se detectaron causas embriológicas pre-cigóticas que expliquen el menor número de semillas en los frutos de las flores aéreas. Ambos tipos de semillas comparten características ontogenéticas y presentan apropiado desarrollo de los óvulos, sacos embrionarios y establecimiento de vías nutricionales para saco embrionario, embrión y endosperma. En general las floraciones insumen un costo energético importante para las especies vegetales. La floración aérea de T. polymorphum, aunque sometida a una fuerte presión de herbivoría del ganado, incorpora variabilidad genética a sus poblaciones a través de la polinización cruzada y permite la dispersión a distancia.Trifolium polymorphum is recognized as one of the best adapted legume in field conditions. It combines different reproductive strategies such as stoloniferous vegetative reproduction and seed reproduction by two types of fruits produced in underground and aerial flowers. These last ones are chasmogamous and underground flowers are cleistogamous. A higher seed production has empirically been detected in underground flowers rather than in aerial ones. In the present work, embryological studies in aerial and underground flowers were carried out in order to determine

  12. Two new species of Indigofera L. (Leguminosae) from the Sneeuberg Centre of Floristic Endemism, Great Escarpment (Eastern and Western Cape, South Africa).

    Clark, V Ralph; Schrire, Brian D; Barker, Nigel P

    2015-01-01

    Two new species of Indigofera L. (Leguminosae) are described from the Sneeuberg Centre of Floristic Endemism on the southern Great Escarpment, Eastern and Western Cape Provinces, South Africa. Both species are localised high-altitude endemics. Indigoferamagnifica Schrire & V.R. Clark is confined to the summit plateau of the Toorberg-Koudeveldberg-Meelberg west of Graaff-Reinet, and complements other western Sneeuberg endemics such as Ericapasserinoides (Bolus) E.G.H. Oliv. and Faurearecondita Rourke & V.R. Clark. Indigoferaasantasanensis Schrire & V.R. Clark is confined to a small area east of Graaff-Reinet, and complements several other eastern Sneeuberg endemics such as Euryopsexsudans B. Nord & V.R. Clark and Euryopsproteoides B. Nord. & V.R. Clark. Based on morphology, both new species belong to the Cape Clade of Indigofera, supporting a biogeographical link between the Cape Floristic Region and the Sneeuberg, as well as with the rest of the eastern Great Escarpment.

  13. Estoque de serapilheira e fertilidade do solo em pastagem degradada de Brachiaria decumbens após implantação de leguminosas arbustivas e arbóreas forrageiras

    André Barbosa Silva

    2013-04-01

    Full Text Available As pastagens formam a base da pecuária brasileira; essas sofrem degradação em larga escala por deficiência de nitrogênio (N. O consórcio com leguminosas, além de fixar N, pode apresentar outros efeitos na fertilidade do solo como acidificação ou retirada de nutrientes de camadas mais profundas para as mais superficiais. Este trabalho objetivou avaliar o estoque de serapilheira e a fertilidade do solo em pastagens degradadas de braquiária (Brachiaria decumbens, após implantar leguminosas arbustivas e arbóreas forrageiras. Para isso, uma amostragem foi realizada em março de 2010 em um experimento no campo, introduzindo pastagem degradada de Brachiaria decumbens, em julho de 2008, com sabiá (Mimosa caesalpiniifolia, leucena (Leucaena leucocephala, mororó (Bauhinia cheilantha e gliricídia (Gliricidia sepium, além de braquiária adubada e não adubada com N. As amostras de solo e serapilheira foram coletadas aos 0-10, 10-20 e 20-40 cm de profundidade, em três transectos, alternando pontos cobertos por gramíneas e leguminosas, totalizando sete amostras compostas por parcela para determinar pH, P, K, Ca, Mg e Al no solo, enquanto SB, t e m foram calculados. A serapilheira foi separada visualmente em leguminosas, gramíneas e materiais não identificados, em que foram utilizados para quantificação de matéria seca, matéria orgânica, N, P, C, fibra detergente ácido e lignina. A introdução das leguminosas aumentou os teores de N total na serapilheira e reduziu as relações C:N, com destaque para gliricídia e sabiá; entretanto, essa última apresentou elevados teores de lignina. Houve efeito significativo da cobertura por leguminosas, sem diferenças entre essas, para pH e K, na profundidade de 0-10 cm, e para Al e m, aos 10-20 cm de profundidade.

  14. EVALUACIÓN DE TRES LEGUMINOSAS COMO COBERTURAS ASOCIADAS CON MAÍZ EN EL TRÓPICO SUBHÚMEDO

    Jos\\u00E9 Bernardino Castillo-Caamal

    2010-01-01

    Full Text Available El objetivo fue evaluar el potencia l de tres leguminosas como coberturas para mejorar el sistema de producción de maíz. Se evaluaron cuatro tratamie ntos: 1 maíz solo; 2 maíz y Phaseolus lunatus de ciclo corto de semilla blanca 3 maíz y Phaseolus lunatus de ciclo largo de semilla blanca y 4 maíz y frijol terciopelo (Mucuna sp. en un diseño experimental de bloques al azar, con cuatro réplicas, durante cuatro ciclos de cultivo (1999-2002 en Yucatán, México. Se midió la biomasa de cultivos, pH, N total, mineralización potencia l anaerobia del nitrógeno, evolución del CO 2, potasio (K, fósforo (P y materia orgánica del suelo, biomasa y frecuencia de arvenses. La cantidad de rastrojo en los tratamie ntos con leguminosas fue: 3436, 3425 y 4018 kg MS /ha para el primero, segundo y tercer año, respectivamente. El nitrógeno aportado por los rastrojos al maíz fue 25,8; 31,9; 52,8 y 43,4 kg/ha para los tratamie ntos 1, 2, 3 y 4, respectivamente. El rendimie nto de grano de maíz fue en promedio 841, 843 y 460 kg MS /ha para el primero, segundo y tercer ciclo, respectivamente; sin diferencias entre tratamie ntos. En el tercer ciclo, el frijol terciopelo disminuyó la biomasa de arvenses de 126 a 58 g MS /m2. Las coberturas ejercieron poca influencia en las variables de suelo y rendimie nto de grano de maíz.

  15. Model-Based GUI Testing Using Uppaal at Novo Nordisk

    H. Hjort, Ulrik; Rasmussen, Jacob Illum; Larsen, Kim Guldstrand

    2009-01-01

    This paper details a collaboration between Aalborg University and Novo Nordiskin developing an automatic model-based test generation tool for system testing of the graphical user interface of a medical device on an embedded platform. The tool takes as input an UML Statemachine model and generates...

  16. Engineering and introduction of de novo disulphide bridges in ...

    The engineeringof de novo disulphide bridges has been explored as a means to increase the thermal stability of enzymes in the rationalmethod of protein engineering. In this study, Disulphide by Design software, homology modelling and moleculardynamics simulations were used to select appropriate amino acid pairs for ...

  17. De novo synthesis of milk triglycerides in humans

    Mammary gland (MG) de novo lipogenesis contributes significantly to milk fat in animals but little is known in humans. Objective: To test the hypothesis that the incorporation of 13C carbons from [U-13C]glucose into fatty acids (FA) and glycerol in triglycerides (TG) will be greater: 1) in milk tha...

  18. Response monitoring in de novo patients with Parkinson's disease.

    Rita Willemssen

    Full Text Available BACKGROUND: Parkinson's disease (PD is accompanied by dysfunctions in a variety of cognitive processes. One of these is error processing, which depends upon phasic decreases of medial prefrontal dopaminergic activity. Until now, there is no study evaluating these processes in newly diagnosed, untreated patients with PD ("de novo PD". METHODOLOGY/PRINCIPAL FINDINGS: Here we report large changes in performance monitoring processes using event-related potentials (ERPs in de novo PD-patients. The results suggest that increases in medial frontal dopaminergic activity after an error (Ne are decreased, relative to age-matched controls. In contrast, neurophysiological processes reflecting general motor response monitoring (Nc are enhanced in de novo patients. CONCLUSIONS/SIGNIFICANCE: It may be hypothesized that the Nc-increase is at costs of dopaminergic activity after an error; on a functional level errors may not always be detected and correct responses sometimes be misinterpreted as errors. This pattern differs from studies examining patients with a longer history of PD and may reflect compensatory processes, frequently occurring in pre-manifest stages of PD. From a clinical point of view the clearly attenuated Ne in the de novo PD patients may prove a useful additional tool for the early diagnosis of basal ganglia dysfunction in PD.

  19. Foldability of a Natural De Novo Evolved Protein.

    Bungard, Dixie; Copple, Jacob S; Yan, Jing; Chhun, Jimmy J; Kumirov, Vlad K; Foy, Scott G; Masel, Joanna; Wysocki, Vicki H; Cordes, Matthew H J

    2017-11-07

    The de novo evolution of protein-coding genes from noncoding DNA is emerging as a source of molecular innovation in biology. Studies of random sequence libraries, however, suggest that young de novo proteins will not fold into compact, specific structures typical of native globular proteins. Here we show that Bsc4, a functional, natural de novo protein encoded by a gene that evolved recently from noncoding DNA in the yeast S. cerevisiae, folds to a partially specific three-dimensional structure. Bsc4 forms soluble, compact oligomers with high β sheet content and a hydrophobic core, and undergoes cooperative, reversible denaturation. Bsc4 lacks a specific quaternary state, however, existing instead as a continuous distribution of oligomer sizes, and binds dyes indicative of amyloid oligomers or molten globules. The combination of native-like and non-native-like properties suggests a rudimentary fold that could potentially act as a functional intermediate in the emergence of new folded proteins de novo. Copyright © 2017 Elsevier Ltd. All rights reserved.

  20. Towards accurate de novo assembly for genomes with repeats

    Bucur, Doina

    2017-01-01

    De novo genome assemblers designed for short k-mer length or using short raw reads are unlikely to recover complex features of the underlying genome, such as repeats hundreds of bases long. We implement a stochastic machine-learning method which obtains accurate assemblies with repeats and

  1. On the performance of de novo pathway enrichment

    Batra, Richa; Alcaraz, Nicolas; Gitzhofer, Kevin

    2017-01-01

    De novo pathway enrichment is a powerful approach to discover previously uncharacterized molecular mechanisms in addition to already known pathways. To achieve this, condition-specific functional modules are extracted from large interaction networks. Here, we give an overview of the state...

  2. De Novo Coding Variants Are Strongly Associated with Tourette Disorder

    Willsey, A Jeremy; Fernandez, Thomas V; Yu, Dongmei

    2017-01-01

    Whole-exome sequencing (WES) and de novo variant detection have proven a powerful approach to gene discovery in complex neurodevelopmental disorders. We have completed WES of 325 Tourette disorder trios from the Tourette International Collaborative Genetics cohort and a replication sample of 186 ...

  3. Illumina-based de novo transcriptome sequencing and analysis

    In the present study, we used Illumina HiSeq technology to perform de novo assembly of heart and musk gland transcriptomes from the Chinese forest musk deer. A total of 239,383 transcripts and 176,450 unigenes were obtained, of which 37,329 unigenes were matched to known sequences in the NCBI nonredundant ...

  4. De novo structural modeling and computational sequence analysis ...

    Different bioinformatics tools and machine learning techniques were used for protein structural classification. De novo protein modeling was performed by using I-TASSER server. The final model obtained was accessed by PROCHECK and DFIRE2, which confirmed that the final model is reliable. Until complete biochemical ...

  5. Direct Visualization of De novo Lipogenesis in Single Living Cells

    Li, Junjie; Cheng, Ji-Xin

    2014-10-01

    Increased de novo lipogenesis is being increasingly recognized as a hallmark of cancer. Despite recent advances in fluorescence microscopy, autoradiography and mass spectrometry, direct observation of de novo lipogenesis in living systems remains to be challenging. Here, by coupling stimulated Raman scattering (SRS) microscopy with isotope labeled glucose, we were able to trace the dynamic metabolism of glucose in single living cells with high spatial-temporal resolution. As the first direct visualization, we observed that glucose was largely utilized for lipid synthesis in pancreatic cancer cells, which occurs at a much lower rate in immortalized normal pancreatic epithelial cells. By inhibition of glycolysis and fatty acid synthase (FAS), the key enzyme for fatty acid synthesis, we confirmed the deuterium labeled lipids in cancer cells were from de novo lipid synthesis. Interestingly, we also found that prostate cancer cells exhibit relatively lower level of de novo lipogenesis, but higher fatty acid uptake compared to pancreatic cancer cells. Together, our results demonstrate a valuable tool to study dynamic lipid metabolism in cancer and other disorders.

  6. Particulated articular cartilage: CAIS and DeNovo NT.

    Farr, Jack; Cole, Brian J; Sherman, Seth; Karas, Vasili

    2012-03-01

    Cartilage Autograft Implantation System (CAIS; DePuy/Mitek, Raynham, MA) and DeNovo Natural Tissue (NT; ISTO, St. Louis, MO) are novel treatment options for focal articular cartilage defects in the knee. These methods involve the implantation of particulated articular cartilage from either autograft or juvenile allograft donor, respectively. In the laboratory and in animal models, both CAIS and DeNovo NT have demonstrated the ability of the transplanted cartilage cells to "escape" from the extracellular matrix, migrate, multiply, and form a new hyaline-like cartilage tissue matrix that integrates with the surrounding host tissue. In clinical practice, the technique for both CAIS and DeNovo NT is straightforward, requiring only a single surgery to affect cartilage repair. Clinical experience is limited, with short-term studies demonstrating both procedures to be safe, feasible, and effective, with improvements in subjective patient scores, and with magnetic resonance imaging evidence of good defect fill. While these treatment options appear promising, prospective randomized controlled studies are necessary to refine the indications and contraindications for both CAIS and DeNovo NT.

  7. Genome-wide patterns and properties of de novo mutations in humans

    Francioli, Laurent C.; Polak, Paz P.; Koren, Amnon; Menelaou, Androniki; Chun, Sung; Renkens, Ivo; van Duijn, Cornelia M.; Swertz, Morris; Wijmenga, Cisca; van Ommen, Gertjan; Slagboom, P. Eline; Boomsma, Dorret I.; Ye, Kai; Guryev, Victor; Arndt, Peter F.; Kloosterman, Wigard P.; de Bakker, Paul I. W.; Sunyaev, Shamil R.

    Mutations create variation in the population, fuel evolution and cause genetic diseases. Current knowledge about de novo mutations is incomplete and mostly indirect(1-10). Here we analyze 11,020 de novo mutations from the whole genomes of 250 families. We show that de novo mutations in the offspring

  8. Genome-wide patterns and properties of de novo mutations in humans

    Francioli, L.C.; Polak, P.P.; Koren, A.; Menelaou, A.; Chun, S.; Renkens, I.; van Duijn, C.M.; Swertz, M.A.; Wijmenga, C.; van Ommen, G.J.; Slagboom, P.E.; Boomsma, D.I.; Ye, K.; Guryev, V.; Arndt, P.F.; Kloosterman, W.P.; Bakker, P.I.W.; Sunyaev, S.R.; Dijk, F.; Neerincx, P.B.T.; Pulit, S.L.; Deelen, P.; Elbers, C.C.; Palamara, P.F.; Pe'er, I.; Abdellaoui, A.; van Oven, M.; Vermaat, M.; Li, M.; Laros, J.F.J.; Stoneking, M.; de Knijff, P.; Kayser, M.; Veldink, J.H.; Van den Berg, L.H.; Byelas, H.; den Dunnen, J.T.; Dijkstra, M.; Amin, N.; van der Velde, K.J.; Hottenga, J.J.; van Setten, J.; van Leeuwen, E.M.; Kanterakis, A.; Kattenberg, V.M.; Karssen, L.C.; van Schaik, B.D.C.; Bot, J.; Nijman, I.J.; van Enckevort, D.; Mei, H.; Koval, V.; Estrada, K.; Medina-Gomez, C.; Lameijer, E.W.; Moed, M.H.; Hehir-Kwa, J.Y.; Handsaker, R.E.; McCarroll, S.A.; Vuzman, D.; Sohail, M.; Hormozdiari, F.; Marschall, T.; Schönhuth, A.; Beekman, M.; de Craen, A.J.; Suchiman, H.E.D.; Hofman, A.; Oostra, B.; Isaacs, A.; Rivadeneira, F.; Uitterlinden, A.G.; Willemsen, G.; Platteel, M.; Pitts, S.J.; Potluri, S.; Sundar, P.; Cox, D.R.; Li, Q.; Li, Y.; Du, Y.; Chen, R.; Cao, H.; Li, N.; Cao, S.; Wang, J.; Bovenberg, J.A.; Brandsma, M.

    2015-01-01

    Mutations create variation in the population, fuel evolution and cause genetic diseases. Current knowledge about de novo mutations is incomplete and mostly indirect. Here we analyze 11,020 de novo mutations from the whole genomes of 250 families. We show that de novo mutations in the offspring of

  9. Germinação, vigor e sanidade de sementes de fava d'anta (Dimorphandra mollis Benth. obtidas de frutos coletados no solo e na planta Germination, vigor and sanity of "fava d'anta" (Dimorphandra mollis Benth. seeds obtained from fruits collected both in the soil and in the plant

    A.V. Araujo

    2009-01-01

    Full Text Available O objetivo do trabalho foi avaliar a qualidade fisiológica e sanitária das sementes obtidas a partir de frutos maduros coletados no solo e nas plantas de fava d'anta, espécie medicinal nativa do Cerrado, ameaçada de extinção, cujos frutos são ricos em rutina. O delineamento experimental empregado foi o inteiramente casualizado, com 10 repetições. Cada repetição foi constituída de uma caixa gerbox contendo 15 sementes cada. A qualidade fisiológica foi determinada por meio de testes de germinação e vigor, avaliando-se a porcentagem de germinação, o índice de velocidade de germinação (IVG e a massa seca das raízes primárias. A qualidade sanitária foi determinada pela identificação dos microorganismos patogênicos associados às sementes, bem como pela porcentagem de ocorrência destes em cada parcela. Os fungos identificados nas sementes pertencem aos gêneros Fusarium, Alternaria, Aspergillus, Cladosporium, Colletrotrichum, Helminthosporium, Nigrospora, Penicillum, Phoma e Phomopsis. Sementes oriundas de frutos coletados no solo foram mais contaminadas por agentes patogênicos e apresentaram germinação (56,67%, vigor e sanidade inferiores às sementes obtidas de frutos coletados na planta.The aim of this work was to evaluate the physiological and sanitary quality of seeds obtained from mature fruits collected in the soil and in "fava d'anta" plants. Dimorphandra mollis constitutes an endangered medicinal species native to cerrado and presents fruits rich in rutin. The experimental design was completely randomized, with 10 replicates. Each replicate consisted of a gerbox containing 15 seeds each. Physiological quality was assessed through germination and vigor tests by evaluating germination percentage, germination velocity index (GVI, and primary root dry matter. Sanitary quality was evaluated by identifying pathogenic microorganisms associated with the seeds, as well as their occurrence percentage in each plot. The

  10. Leguminosas nuevas de Colombia

    Uribe Uribe Lorenzo

    1947-12-01

    Full Text Available El presente estudio se ocupa de tres nuevas especies del género Inga, dos de las cuales presentan caracteres muy notables en el género. La gentileza del doctor E. P. Killip, del Museo Nacional de los Estados Unidos, me permite incluir aquí una nueva especie del genero Machaerium; descrita por el y tipificada en un ejemplar colectado por mi en la región de Urabá.

  11. Caesalpiniaceae (Leguminosae-Caesalpinioideae)

    Hou, Ding; Larsen, K.; Larsen, S.S.

    1996-01-01

    In Malesia the family contains 25 indigenous genera and 8 genera with only introduced species, as follows (in brackets the number of native and/or introduced species in Malesia): Acrocarpus (1), Afzelia (2), Amherstia (1), Bauhinia (69), Brownea (4), Caesalpinia (22), Cassia (4), Chamaecrista (5),

  12. (Sw) DC (Leguminosae) pods

    International Pharmaceutical Abstract, Chemical Abstracts, Embase, Index Copernicus, EBSCO, African ... Since the discovery of terpenes, more than 150 years ago ... anticancer drug discovery. .... (Agricultural Research Service/USDA) [17].

  13. Melhoramento do cafeeiro: IV - Café Mundo Novo

    A. Carvalho

    1952-06-01

    Full Text Available Em um conjunto de cafeeiros existentes em Mundo Novo, hoje Urupês, na região Araraquarense do Estado de São Paulo, foram feitas seleções de vários cafeeiros baseando-se no seu aspecto vegetativo, na produção existente na época da seleção e na provável produção do ano seguinte. Estudou-se a origem da plantação inicial desse café, tanto em Urupês como em Jaú, chegando-se à conclusão de que é provavelmente originário desta última localidade. Progênies do café "Mundo Novo", anteriormente conhecido por "Sumatra" e derivado de plantas selecionadas em Urupês e Jaú, acham-se em estudo em seis localidades do Estado : Campinas, Ribeirão Prêto, Pindorama, Mococa, Jaú e Monte Alegre do Sul. No presente trabalho são apenas aproveitados dados referentes à variabilidade morfológica e característicos da produção das progênies dos primeiros cafeeiros selecionados em Urupês e estudados em Campinas, Jaú, Pindorama e Mococa. Em tôdas as localidades, observou-se variação nos caracteres morfológicos das progênies, verificando-se a ocorrência de plantas quase improdutivas. A maioria das progênies, no entanto, se caracteriza por acentuado vigor vegetativo. Foram estudadas as produções totais das progénies e das plantas, no período 1946-1951, notando-se que algumas progénies se salientaram pela elevada produção em tôdas as localidades. Os tipos de sementes "moca", "concha" e "chato" foram determinados em amostras de tôdas as plantas, por um período de três anos, notando-se que a variação ocorrida é da mesma ordem que a encontrada em outros cafeeiros em seleção. Procurou-se eliminar, pela seleção, cafeeiros com elevada produção de frutos sem sementes em uma ou duas lojas, característico êsse que parece ser hereditário. Os resultados obtidos de cruzamento entre os melhores cafeeiros "Mundo Novo" de Campinas e plantas da variedade murta, indicaram que esses cafeeiros são do tipo bourbon. Provavelmente

  14. Recurrence risk in de novo structural chromosomal rearrangements.

    Röthlisberger, Benno; Kotzot, Dieter

    2007-08-01

    According to the textbook of Gardner and Sutherland [2004], the standard on genetic counseling for chromosome abnormalities, the recurrence risk of de novo structural or combined structural and numeric chromosome rearrangements is less than 0.5-2% and takes into account recurrence by chance, gonadal mosaicism, and somatic-gonadal mosaicism. However, these figures are roughly estimated and neither any systematic study nor exact or evidence-based risk calculations are available. To address this question, an extensive literature search was performed and surprisingly only 29 case reports of recurrence of de novo structural or combined structural and numeric chromosomal rearrangements were found. Thirteen of them were with a trisomy 21 due to an i(21q) replacing one normal chromosome 21. In eight of them low-level mosaicism in one of the parents was found either in fibroblasts or in blood or in both. As a consequence of the low number of cases and theoretical considerations (clinical consequences, mechanisms of formation, etc.), the recurrence risk should be reduced to less than 1% for a de novo i(21q) and to even less than 0.3% for all other de novo structural or combined structural and numeric chromosomal rearrangements. As the latter is lower than the commonly accepted risk of approximately 0.3% for indicating an invasive prenatal diagnosis and as the risk of abortion of a healthy fetus after chorionic villous sampling or amniocentesis is higher than approximately 0.5%, invasive prenatal investigation in most cases is not indicated and should only be performed if explicitly asked by the parents subsequent to appropriate genetic counseling. (c) 2007 Wiley-Liss, Inc.

  15. Novos encontros de anofelíneos em recipientes artificiais

    Oswaldo Paulo Forattini

    1998-12-01

    Full Text Available Assinalam-se novos encontros de anofelíneos em recipientes artificiais. Um deles diz respeito a formas imaturas de Anopheles bellator em criadouros experimentais e outro é concernente ao achado de An. albitarsis l.s., em recipiente abandonado. Tecem-se considerações sobre a pressão seletiva representada pela produção, cada vez maior, de objetos descartáveis.

  16. Infant Mortality in Novo Hamburgo: Associated Factors and Cardiovascular Causes

    Brum, Camila de Andrade [Instituto de Cardiologia/Fundação Universitária de Cardiologia (IC/FUC), Porto Alegre, RS (Brazil); Stein, Airton Tetelbom [Universidade Federal de Ciências da Saúde de Porto Alegre (UFCSPA), Porto Alegre, RS (Brazil); Grupo Hospitalar Conceição (GHC), Porto Alegre, RS (Brazil); Universidade Luterana do Brasil (ULBRA), Porto Alegre, RS (Brazil); Pellanda, Lucia Campos, E-mail: luciapell.pesquisa@cardiologia.org.br [Instituto de Cardiologia/Fundação Universitária de Cardiologia (IC/FUC), Porto Alegre, RS (Brazil); Universidade Federal de Ciências da Saúde de Porto Alegre (UFCSPA), Porto Alegre, RS (Brazil)

    2015-04-15

    Infant mortality has decreased in Brazil, but remains high as compared to that of other developing countries. In 2010, the Rio Grande do Sul state had the lowest infant mortality rate in Brazil. However, the municipality of Novo Hamburgo had the highest infant mortality rate in the Porto Alegre metropolitan region. To describe the causes of infant mortality in the municipality of Novo Hamburgo from 2007 to 2010, identifying which causes were related to heart diseases and if they were diagnosed in the prenatal period, and to assess the access to healthcare services. This study assessed infants of the municipality of Novo Hamburgo, who died, and whose data were collected from the infant death investigation records. Of the 157 deaths in that period, 35.3% were reducible through diagnosis and early treatment, 25% were reducible through partnership with other sectors, 19.2% were non-preventable, 11.5% were reducible by means of appropriate pregnancy monitoring, 5.1% were reducible through appropriate delivery care, and 3.8% were ill defined. The major cause of death related to heart disease (13.4%), which was significantly associated with the variables ‘age at death’, ‘gestational age’ and ‘birth weight’. Regarding access to healthcare services, 60.9% of the pregnant women had a maximum of six prenatal visits. It is mandatory to enhance prenatal care and newborn care at hospitals and basic healthcare units to prevent infant mortality.

  17. Infant Mortality in Novo Hamburgo: Associated Factors and Cardiovascular Causes

    Camila de Andrade Brum

    2015-04-01

    Full Text Available Background: Infant mortality has decreased in Brazil, but remains high as compared to that of other developing countries. In 2010, the Rio Grande do Sul state had the lowest infant mortality rate in Brazil. However, the municipality of Novo Hamburgo had the highest infant mortality rate in the Porto Alegre metropolitan region. Objective: To describe the causes of infant mortality in the municipality of Novo Hamburgo from 2007 to 2010, identifying which causes were related to heart diseases and if they were diagnosed in the prenatal period, and to assess the access to healthcare services. Methods: This study assessed infants of the municipality of Novo Hamburgo, who died, and whose data were collected from the infant death investigation records. Results: Of the 157 deaths in that period, 35.3% were reducible through diagnosis and early treatment, 25% were reducible through partnership with other sectors, 19.2% were non-preventable, 11.5% were reducible by means of appropriate pregnancy monitoring, 5.1% were reducible through appropriate delivery care, and 3.8% were ill defined. The major cause of death related to heart disease (13.4%, which was significantly associated with the variables ‘age at death’, ‘gestational age’ and ‘birth weight’. Regarding access to healthcare services, 60.9% of the pregnant women had a maximum of six prenatal visits. Conclusion: It is mandatory to enhance prenatal care and newborn care at hospitals and basic healthcare units to prevent infant mortality.

  18. Generative Recurrent Networks for De Novo Drug Design.

    Gupta, Anvita; Müller, Alex T; Huisman, Berend J H; Fuchs, Jens A; Schneider, Petra; Schneider, Gisbert

    2018-01-01

    Generative artificial intelligence models present a fresh approach to chemogenomics and de novo drug design, as they provide researchers with the ability to narrow down their search of the chemical space and focus on regions of interest. We present a method for molecular de novo design that utilizes generative recurrent neural networks (RNN) containing long short-term memory (LSTM) cells. This computational model captured the syntax of molecular representation in terms of SMILES strings with close to perfect accuracy. The learned pattern probabilities can be used for de novo SMILES generation. This molecular design concept eliminates the need for virtual compound library enumeration. By employing transfer learning, we fine-tuned the RNN's predictions for specific molecular targets. This approach enables virtual compound design without requiring secondary or external activity prediction, which could introduce error or unwanted bias. The results obtained advocate this generative RNN-LSTM system for high-impact use cases, such as low-data drug discovery, fragment based molecular design, and hit-to-lead optimization for diverse drug targets. © 2017 The Authors. Published by Wiley-VCH Verlag GmbH & Co. KGaA.

  19. Infant Mortality in Novo Hamburgo: Associated Factors and Cardiovascular Causes

    Brum, Camila de Andrade; Stein, Airton Tetelbom; Pellanda, Lucia Campos

    2015-01-01

    Infant mortality has decreased in Brazil, but remains high as compared to that of other developing countries. In 2010, the Rio Grande do Sul state had the lowest infant mortality rate in Brazil. However, the municipality of Novo Hamburgo had the highest infant mortality rate in the Porto Alegre metropolitan region. To describe the causes of infant mortality in the municipality of Novo Hamburgo from 2007 to 2010, identifying which causes were related to heart diseases and if they were diagnosed in the prenatal period, and to assess the access to healthcare services. This study assessed infants of the municipality of Novo Hamburgo, who died, and whose data were collected from the infant death investigation records. Of the 157 deaths in that period, 35.3% were reducible through diagnosis and early treatment, 25% were reducible through partnership with other sectors, 19.2% were non-preventable, 11.5% were reducible by means of appropriate pregnancy monitoring, 5.1% were reducible through appropriate delivery care, and 3.8% were ill defined. The major cause of death related to heart disease (13.4%), which was significantly associated with the variables ‘age at death’, ‘gestational age’ and ‘birth weight’. Regarding access to healthcare services, 60.9% of the pregnant women had a maximum of six prenatal visits. It is mandatory to enhance prenatal care and newborn care at hospitals and basic healthcare units to prevent infant mortality

  20. Cultivo de milho no sistema de aléias com leguminosas perenes Maize crop in alley cropping system with perennials legumes

    Luciano Rodrigues Queiroz

    2007-10-01

    Full Text Available Objetivou-se avaliar a influência de algumas leguminosas perenes no teor foliar de N, P e K e na produtividade da cultura do milho (UENF 506-8, cultivado no sistema de aléias, sem adubação fosfatada. Foram realizados experimentos de campo por dois ciclos de cultivo, no Campo Experimental do CCTA/UENF, em Campos dos Goytacazes - RJ. Os tratamentos consistiram no sistema de aléias com Albizia lebbeck (L. Benth., Peltophorum dubium (Spreng. Taub., Leucaena leucocephala (Lam. de Wit., Cajanus cajan (L. Millsp., Sesbania virgata (Cav. Pers., Mimosa caesalpiniaefolia Benth., Gliricidia sepium (Jacq. Pers. e duas testemunhas com milho solteiro (com e sem NPK. Após oito meses de plantio das leguminosas, essas foram podadas, o material foi incorporado ao solo e em seguida semeado o milho nas entrelinhas, com espaçamento de 80 cm entre fileiras. Após 60 dias da semeadura do milho efetuou-se nova poda. No segundo ciclo de cultivo, as práticas culturais foram similares às do primeiro. Foi utilizado o delineamento em blocos casualizados com quatro repetições. Nas aléias de guandu, observou-se milho com maior teor foliar de N, em relação às demais leguminosas, no primeiro ciclo de cultivo. No segundo ciclo, os consórcios milho+guandu, milho+gliricídia e milho solteiro adubado superaram os demais na produtividade de grãos.The objective of this study was to evaluate the effects of perennials legumes, in N, P and K foliar concentration and maize productivity in alley cropping system, without phosphorus fertilization. Field experiments were carried out for two cycles, with legumes intercropping maize (UENF 506-8 in Field Research CCTA/UENF in Campos dos Goytacazes - RJ - Brazil. The treatments consisted of alley cropping system with the species: Albizia lebbeck (L. Benth., Peltophorum dubium (Spreng. Taub., Leucaena leucocephala (Lam. de Wit., Cajanus cajan (L. Millsp., Sesbania virgata (Cav. Pers., Mimosa caesalpiniaefolia Benth., Gliricidia

  1. Regionalización y relaciones biogeográficas de la Península de Yucatán con base en los patrones de distribución de la familia Leguminosae The biogeographical regions and relationship of the Yucatán Peninsula based on distribution patterns of the Leguminosae family

    Rodrigo Duno-de Stefano

    2012-12-01

    Full Text Available Se analizaron los patrones de distribución geográfica de 224 especies de leguminosas nativas de la Península de Yucatán (México en 48 unidades geográficas operativas (0.5° de latitud y 0.5 ° longitud. Las relaciones biogeográficas regionales se determinaron utilizando información de las leguminosas de 12 áreas de América Central, América del Norte, América del Sur y las Antillas. Se emplearon 3 métodos de análisis: coeficiente de Jaccard, análisis de parsimonia (PAE y un análisis de patrones generales de distribución, como una visualización general de los trazos individuales de Croizat. También se revisaron filogenias de algunos géneros de leguminosas para determinar patrones de evolución geográfica. La mayor riqueza de especies encontrada al sur de la península se asocia con el gradiente climático en sentido norte-sur. Los resultados indican que esta área se puede dividir en 2 áreas biogeográficas (distritos: una franja septentrional y una franja meridional y al menos 5 subdistritos. Los análisis de parsimonia (PAE y los patrones generales de distribución son congruentes con los análisis de similitud. Todos los resultados sugieren que la Península de Yucatán presenta la mayor afinidad con América Central, y le sigue América del Norte, América del Sur y finalmente las Antillas, mientras que el elemento endémico representa el 6.7 %.In order to assess biogeographical relationship of the Yucatán Peninsula (Mexico, it was divided in 48 operational geographic units of 0.5 ° latitude and longitude and the distribution patterns of 224 native species of the family Leguminosae were analyzed. Biogeographic relations were determined comparing our results with legumes information of 12 neighboring areas of Central, North and South America, and the Caribbean. Three methodologies were used to analyze the information: the Jaccard's similarity coefficient, parsimony analysis of endemism (PAE, and a simple comparison of

  2. Larvicidal activity of oil-resin fractions from the Brazilian medicinal plant Copaifera reticulata Ducke (Leguminosae-Caesalpinoideae against Aedes aegypti (Diptera, Culicidae Atividade larvicida das frações do óleo-resina da planta medicinal brasileira Copaifera reticulata Ducke (Leguminosae-Caesalpinoideae sobre o Aedes aegypti (Diptera, Culicidae

    Heloísa Helena Garcia da Silva

    2007-06-01

    Full Text Available Oil-resin fractions from Copaifera reticulata Ducke (Leguminosae-Caesalpinoideae were evaluated for larvicidal activity on third larval instars of Aedes aegypti, in searching for alternative control methods for this mosquito. The bioactive fractions were chemically monitored by thin-layer chromatography, ¹H and 13C nuclear magnetic resonance and mass spectrometry. Bioassays were performed using five repetitions, at a temperature of 28 ± 1°C, relative humidity of 80 ± 5% and light and dark cycles of 12h. Mortality was indicated by darkening of the cephalic capsule after 24h of exposure of the larvae to the solutions. The most active fractions were CRM1-4 (sesquiterpenes and CRM5-7 (labdane diterpenes, which showed LC50 values of 0.2 and 0.8ppm, respectively.A atividade larvicida das frações do óleo-resina de Copaifera reticulata Ducke (Leguminosae-Caesalpinoideae foi avaliada em larvas de 3º estádio de Aedes aegypti, na busca de alternativas para o controle desse mosquito. As frações bioativas foram monitoradas quimicamente através de cromatografia de camada delgada, analisada por ressonância magnética nuclear de hidrogênio (¹H e 13C e espectrometria de massas. Os bioensaios foram realizados à temperatura de 28±1°C, 80±5% de umidade relativa e fotofase de 12h, com cinco repetições. A mortalidade foi determinada através do escurecimento da cápsula cefálica, após 24h de exposição das larvas às soluções. As frações mais ativas foram CRM1-4 (sesquiterpenos e CRM5-7 (diterpeno labdano, que mostraram os valores de CL50 de 0,2 e 0,8ppm, respectivamente.

  3. Contribuição ao conhecimento morfológico das espécies de leguminosae comercializadas no estado do Pará, como "angelim" Contribution to the morphologic knowledge of the species of leguminosae in the state of Pará, traded as "angelim"

    Gracialda Costa Ferreira

    2004-01-01

    Full Text Available Sete espécies de Leguminosae comercializadas como "angelim", no estado do Pará, foram analisadas quanto aos aspectos morfológicos dos órgãos vegetativos e reprodutivos. Este estudo visou determinar diferenças básicas entre as espécies comercializadas com esta denominação vernacular, a fim de auxiliar no processo de identificação taxonômica das mesmas. Foi elaborada uma chave dicotômica para separar as espécies estudadas (Andira surinamensis, Dinizia excelsa, Hymenolobium excelsum, H. modestum, H. pulcherrimum, H. petraeum e Vatairea paraensis. As principais características utilizadas no campo, para separação das espécies estudadas, foram folha, folíolo, casca e tronco, porém, espécies de Andira, Hymenolobium e Vatairea, por apresentarem-se desprovidas de folhas no período fértil, necessitam de dados dos órgãos reprodutivos.The morphology of vegetative and reproductive structures of seven species of Leguminosae traded as "angelim" in the State of Pará were analyzed. This study sought to determine the basic differences between the species traded under the same vernacular name, in order to facilitate their taxonomic identification. A dichotomous key was developed to distinguish the species studied (Andira surinamensis, Dinizia excelsa, Hymenolobium excelsum, H. modestum, H. pulcherrimum, H. petraeum and Vatairea paraensis. The main characteristics used for separation in the field were of leaf, leaflet, bark and trunk. However, flower or fruit characters are needed to identify those species of Andira, Hymenolobium and Vatairea that lose their leaves while flowering.

  4. Evaluation of legumes and poultry manure for the early protection of burnt soils Evaluación de leguminosas y gallinaza para la protección temprana de suelos quemados Avaliaçao da utilizaçao de leguminosas e estrume de galináceos na protecção precoce de solos queimados

    Serafín González Prieto

    2012-03-01

    Full Text Available

    Organic amendments combined with the sowing of gramineous grasses are effective for the early protection of burnt soils (BS but cannot restore soil N status to pre-fire level; this has led to interest in combining their use with N2 fixer legumes. The effectiveness of applying poultry manure (PM; 2 Mg ha-1 and sowing legumes (Lotus corniculatus, Lupinus polyphyllus and Trifolium repens for the early protection of BS was compared with that of applying PM + Lolium perenne and growing these four species without PM in a 3-month pot experiment, which also included a control consisting of an unburnt soil (US. In US, the shoot and root biomass increased as follows: Trifolium ~ Lotus << Lolium < Lupinus. Compared with those grown in US, plants grown in BS were smaller and weaker in three species (Lupinus, Lolium and Trifolium. The reverse was true for the four species grown in BS+PM, which showed the benefits of PM addition. In all the treatments, plant N uptake, which prevents soil-N losses, increased as follows: Trifolium ~ Lotus < Lupinus < Lolium. The lack of nodules observed suggested that none of the legumes fixed atmospheric-N2.

    Las enmiendas orgánicas combinadas con la siembra de gramíneas son efectivas para la protección temprana de los suelos quemados (SQ, pero insuficientes para restaurar el estatus pre-incendio del N-edáfico, lo cual deriva en el interés de emplear dichas enmiendas en combinación con leguminosas fijadoras de N2. La utilidad de la gallinaza (G, 2 Mg ha-1 y la siembra de leguminosas (Lotus corniculatus, Lupinus polyphyllus y Trifolium repens para la protección temprana de SQ se comparó con la de G + Lolium perenne y esas cuatro especies sin G en una experiencia en invernadero durante tres meses que tambi

  5. Web Access to Digitised Content of the Exhibition Novo Mesto 1848-1918 at the Dolenjska Museum, Novo Mesto

    Majda Pungerčar

    2013-09-01

    Full Text Available EXTENDED ABSTRACTFor the first time, the Dolenjska museum Novo mesto provided access to digitised museum resources when they took the decision to enrich the exhibition Novo mesto 1848-1918 by adding digital content. The following goals were identified: the digital content was created at the time of exhibition planning and design, it met the needs of different age groups of visitors, and during the exhibition the content was accessible via touch screen. As such, it also served for educational purposes (content-oriented lectures or problem solving team work. In the course of exhibition digital content was accessible on the museum website http://www.novomesto1848-1918.si. The digital content was divided into the following sections: the web photo gallery, the quiz and the game. The photo gallery was designed in the same way as the exhibition and the print catalogue and extended by the photos of contemporary Novo mesto and accompanied by the music from the orchestron machine. The following themes were outlined: the Austrian Empire, the Krka and Novo mesto, the town and its symbols, images of the town and people, administration and economy, social life and Novo mesto today followed by digitised archive materials and sources from that period such as the Commemorative book of the Uniformed Town Guard, the National Reading Room Guest Book, the Kazina guest book, the album of postcards and the Diploma of Honoured Citizen Josip Gerdešič. The Web application was also a tool for a simple and on line selection of digitised material and the creation of new digital content which proved to be much more convenient for lecturing than Power Point presentations. The quiz consisted of 40 questions relating to the exhibition theme and the catalogue. Each question offered a set of three answers only one of them being correct and illustrated by photography. The application auto selected ten questions and valued the answers immediately. The quiz could be accessed

  6. Avaliação da atividade antibacteriana e triagem fitoquímica das flores de Acacia podalyriifolia A. Cunn. ex G. Don Leguminosae-Mimosoideae

    C.A. Andrade

    Full Text Available A atividade antibacteriana das flores da Acacia podalyriifolia A. Cunn. (Leguminosae foi avaliada pelo método de difusão em disco. As bactérias testadas foram: Staphylococcus aureus (ATCC 6538, Staphylococcus epidermidis (ATCC 1228, Escherichia coli (ATCC 11229 e Pseudomonas aeruginosa (ATCC 27853. O meio de cultura utilizado foi ágar Müeller-Hinton. Foram utilizados discos de papel (6 mm de diâmetro impregnados com 1000, 500, 250 e 125 mg dos extratos: Etanol Bruto, fração Acetato de Etila e fração Diclorometano obtidas a partir do extrato etanólico bruto. Os resultados indicam que as amostras avaliadas exercem ação contra as cepas gram positivo testadas, em graus variáveis sendo que a fração Acetato de Etila apresentou maior atividade. A triagem fitoquímica indicou a presença de fenóis e flavonoides nas flores de A. podalyriifolia.

  7. Modificación del caldo extracto de levadura manitol para la producción a mediana escala de inoculantes para leguminosas

    Ernesto Ormeño-Orrillo

    2014-06-01

    Full Text Available El caldo extracto de levadura manitol (LM, un medio ampliamente utilizado para el cultivo de rizobios, fue modificado para reducir su costo y utilizarlo en la producción a mediana escala de inoculantes para leguminosas. Los dos ingredientes más costosos, el extracto de levadura y el manitol, fueron reducidos o reemplazados con substratos más económicos. Se pudo reducir la concentración de extracto de levadura a 0,05 g/L sin afectar el crecimiento cuando se agregó 1,1 g/L de ácido glutámico o glutamato de sodio grado alimento. El manitol pudo ser substituido por 12,5 g/L de glicerina grado farmacéutico para las cepas de Bradyrhizobium o por 10 g/L de azúcar grado alimento para las cepas de Rhizobium. No se alteraron las propiedades simbióticas de las cepas cultivados en los medios modificados.

  8. Potential pollinators of Comolia ovalifolia DC Triana (Melastomataceae) and Chamaecrista ramosa (Vog.) H.S. Irwin and Barneby var. ramosa (Leguminosae-Caesalpinioideae), in restinga, Bahia, Brazil.

    Oliveira-Rebouças, P; Gimenes, M

    2011-05-01

    Comolia ovalifolia DC Triana (Melastomataceae) and Chamaecrista ramosa (Vog.) H.S. Irwin and Barneby var. ramosa (Leguminosae-Caesalpinioideae) are tropical plant species found in restinga (herbaceous-shrubby, sandy costal ecosystems). They have flowers with poricidal anthers and are pollinated by bees. The study sought to analyse potential pollinators of both plants during visits to their flowers in a restinga area in Bahia. The flowering displayed by both species was considered continuous and long duration, constantly providing pollen to floral visitors. C. ovalifolia was visited by 17 species of bees and C. ramosa by 16 species, predominantly from the Apidae family (with a similarity index of 74%). The behavior displayed by these visiting bees was of vibrating anthers. The small-sized Euglossa sp. Latreille, 1802 and Florilegus similis Urban, 1970 bees played less of a role as pollinators, since they rarely touched the flower stigma during harvests and were thus considered opportunist visitors or casual pollinators. Centris decolorata Lepetier, 1841 (= C. leprieuri) and Xylocopa subcyanea Perez, 1901 are large bees and were considered efficient pollinators of C. ovalifolia and C. ramosa because of the higher frequency and constancy of their visits, and their favourable behaviour and size for pollen transfer between flowers, which guarantees the survival of these native restinga plant species.

  9. Phylogenetic relationships in the genus Leonardoxa (Leguminosae: Caesalpinioideae) inferred from chloroplast trnL intron and trnL-trnF intergenic spacer sequences.

    Brouat, Carine; Gielly, Ludovic; McKey, Doyle

    2001-01-01

    The African genus LEONARDOXA: (Leguminosae: Caesalpinioideae) comprises two Congolean species and a group of four mostly allopatric subspecies principally located in Cameroon and clustered together in the L. africana complex. LEONARDOXA: provides a good opportunity to investigate the evolutionary history of ant-plant mutualisms, as it exhibits various grades of ant-plant interactions from diffuse to obligate and symbiotic associations. We present in this paper the first molecular phylogenetic study of this genus. We sequenced both the chloroplast DNA trnL intron (677 aligned base pairs [bp]) and trnL-trnF intergene spacer (598 aligned bp). Inferred phylogenetic relationships suggested first that the genus is paraphyletic. The L. africana complex is clearly separated from the two Congolean species, and the integrity of the genus is thus in question. In the L. africana complex, our data showed a lack of congruence between clades suggested by morphological and chloroplast characters. This, and the low level of molecular divergence found between subspecies, suggests gene flow and introgressive events in the L. africana complex.

  10. Interferência da disponibilidade de luz na resposta à adubação de plantios de enriquecimento com leguminosas arbóreas

    Marco Aurélio de Carvalho Silva

    2013-03-01

    Full Text Available O objetivo deste trabalho foi avaliar a interferência da disponibilidade de luz na resposta à adubação de plantios de enriquecimento da capoeira com leguminosas arbóreas. As espécies Hymenaea courbaril, Stryphnodendron guianense, Parkia platycephala e Stryphnodendron microstachyum foram plantadas em capoeira, sob três tratamentos de fertilização: adubação orgânica, adubação orgânica acrescida de mineral e ausência de adubação. A disponibilidade de luz condicionou a resposta de P. platycephala e H. courbaril à fertilização. A aleatorização não foi suficiente para garantir condições semelhantes de luz nos plantios de enriquecimento. A variação na quantidade de luz incidente no sub‑bosque compromete a correta avaliação dos tratamentos de fertilização.

  11. De novo assembly of highly diverse viral populations

    Yang Xiao

    2012-09-01

    Full Text Available Abstract Background Extensive genetic diversity in viral populations within infected hosts and the divergence of variants from existing reference genomes impede the analysis of deep viral sequencing data. A de novo population consensus assembly is valuable both as a single linear representation of the population and as a backbone on which intra-host variants can be accurately mapped. The availability of consensus assemblies and robustly mapped variants are crucial to the genetic study of viral disease progression, transmission dynamics, and viral evolution. Existing de novo assembly techniques fail to robustly assemble ultra-deep sequence data from genetically heterogeneous populations such as viruses into full-length genomes due to the presence of extensive genetic variability, contaminants, and variable sequence coverage. Results We present VICUNA, a de novo assembly algorithm suitable for generating consensus assemblies from genetically heterogeneous populations. We demonstrate its effectiveness on Dengue, Human Immunodeficiency and West Nile viral populations, representing a range of intra-host diversity. Compared to state-of-the-art assemblers designed for haploid or diploid systems, VICUNA recovers full-length consensus and captures insertion/deletion polymorphisms in diverse samples. Final assemblies maintain a high base calling accuracy. VICUNA program is publicly available at: http://www.broadinstitute.org/scientific-community/science/projects/viral-genomics/ viral-genomics-analysis-software. Conclusions We developed VICUNA, a publicly available software tool, that enables consensus assembly of ultra-deep sequence derived from diverse viral populations. While VICUNA was developed for the analysis of viral populations, its application to other heterogeneous sequence data sets such as metagenomic or tumor cell population samples may prove beneficial in these fields of research.

  12. Uncovering Clinical Features of De Novo Philadelphia Positive Myelodysplasia.

    Armas, Aristides; Chen, Chen; Mims, Martha; Rivero, Gustavo

    2017-01-01

    Myelodysplastic syndrome (MDS) is cytogenetically heterogeneous and retains variable risk for acute myeloid leukemia transformation. Though not yet fully understood, there is an association between genetic abnormalities and defects in gene expression. The functional role for infrequent cytogenetic alteration remains unclear. An uncommon chromosomic abnormality is the presence of the Philadelphia (Ph) chromosome. Here, we report a patient with Ph+ MDS treated with low dose Dasatinib who achieved hematologic response for 7 months. In addition, we also examined the English literature on all de novo Ph + MDS cases between 1996 and 2015 to gain insight into clinical features and outcome.

  13. Perspective on Biotransformation and De Novo Biosynthesis of Licorice Constituents.

    Zhao, Yujia; Lv, Bo; Feng, Xudong; Li, Chun

    2017-12-27

    Licorice, an important herbal medicine, is derived from the dried roots and rhizomes of Glycyrrhiza genus plants. It has been widely used in food, pharmaceutical, tobacco, and cosmetics industries with high economic value. However, overexploitation of licorice resources has severely destroyed the local ecology. Therefore, producing bioactive compounds of licorice through the biotransformation and bioengineering methods is a hot spot in recent years. In this perspective, we comprehensively summarize the biotransformation of licorice constituents into high-value-added derivatives by biocatalysts. Furthermore, successful cases and the strategies for de novo biosynthesizing compounds of licorice in microbes have been summarized. This paper will provide new insights for the further research of licorice.

  14. De Novo and Recurrence of Nonalcoholic Steatohepatitis After Liver Transplantation.

    Kappus, Matthew; Abdelmalek, Manal

    2017-05-01

    Nonalcoholic fatty liver disease (NAFLD) is the most common cause of chronic liver disease in developing countries. Approximately 25% of patients with NAFLD develop nonalcoholic steatohepatitis (NASH). NASH-related cirrhosis is now a leading listing indication for liver transplantation in the United States. Although posttransplant survival for NASH-related cirrhosis is comparable with that of other liver diseases, many patients have features of metabolic syndrome, which can contribute to a recurrence of NAFLD or NASH. This article reviews the epidemiology, pathophysiology, and treatment of de novo and recurrence of NASH after liver transplantation. Copyright © 2017 Elsevier Inc. All rights reserved.

  15. The historical town core and traffic in Novo mesto

    Lilijana Jankovič

    2001-01-01

    Full Text Available The historical town core of Novo mesto is subject to intolerable traffic conditions. Individual car use is suffocating the town core, but simultaneously good access is essential for shopkeepers and other inhabitants since buses don’t go there. The project proposes changes to the traffic regime, its basic goals are to redesign the town square into a pedestrian place and to eliminate transitory traffic by rerouting vehicles to less burdened side roads. It introduces short-term parking, smaller parking garages in the core and larger parking spaces on the edge and routes the buses through the town core.

  16. Model-Based GUI Testing Using Uppaal at Novo Nordisk

    Hjort, Ulrik H.; Illum, Jacob; Larsen, Kim G.; Petersen, Michael A.; Skou, Arne

    This paper details a collaboration between Aalborg University and Novo Nordiskin developing an automatic model-based test generation tool for system testing of the graphical user interface of a medical device on an embedded platform. The tool takes as input an UML Statemachine model and generates a test suite satisfying some testing criterion, such as edge or state coverage, and converts the individual test case into a scripting language that can be automatically executed against the target. The tool has significantly reduced the time required for test construction and generation, and reduced the number of test scripts while increasing the coverage.

  17. Rhizobia and other legume nodule bacteria richness in brazilian Araucaria angustifolia forest Riqueza de rizóbios e de outras bactérias de nódulos de leguminosas em floresta de Araucaria angustifolia

    Daniel Renato Lammel

    2007-08-01

    Full Text Available The Araucaria Forest is a sub-type of the Atlantic Forest, dominated by Araucaria angustifolia, which is considered an endangered species. The understory has a high diversity of plant species, including several legumes. Many leguminous plants nodulate with rhizobia and fix atmospheric nitrogen, contributing to forest sustainability. This work aimed at bacteria isolation and phenotypic characterization from the root nodules of legumes occurring in Araucaria Forests, at Campos do Jordão State Park, Brazil. Nodule bacteria were isolated in YMA growth media and the obtained colonies were classified according to their growth characteristics (growth rate, color, extra cellular polysaccharide production and pH change of the medium. Data were analyzed by cluster and principal components analysis (PCA. From a total of eleven collected legume species, nine presented nodules, and this is the first report on nodulation of five of these legume species. Two hundred and twelve bacterial strains were isolated from the nodules, whose nodule shapes varied widely and there was a great phenotypic richness among isolates. This richness was found among legume species, individuals of the same species, different nodule shapes and even among isolates of the same nodule. These isolates could be classified into several groups, two up to six according to each legume, most of them different from the used growth standards Rhizobium tropici, Bradyrhizobium elkanii and Burkholderia sp. There is some evidence that these distinct groups may be related to the presence of Burkholderia spp. in the nodules of these legumes.A Floresta de Araucária é um sub-tipo da Mata Atlântica, cujo dossel é dominado por Araucaria angustifolia, uma espécie ameaçada de extinção. O sub-bosque dessa floresta tem alta diversidade, incluindo muitas espécies de leguminosas. Estas plantas podem formar nódulos e fixar nitrogênio atmosférico, contribuindo para a sustentabilidade da floresta

  18. Novo-desenvolvimento, capital social e desigualdade social

    Ana Cristina de Oliveira Oliveira

    2012-03-01

    Full Text Available Este artigo aborda a tendência de enfrentamento da desigualdade social a partir, no campo econômico, da versão do novo-desenvolvimentismo e, no campo político e ideológico, a partir da noção de capital social, na tentativa de realizar um "capitalismo com face mais humana". Discutiremos duas ordens de questões, considerando a especificidade da formação social brasileira de capitalismo dependente: 1 a “construção de Estados fortes” para

    assegurar as condições de acumulação do capital, ampliando as margens do mercado de consumo, aliviando a pobreza e controlando possíveis tensões políticas e 2 a difusão da necessidade de construir uma sociedade em harmonia, que se traduz na incorporação da ética empreendedora dos empresários em todas as esferas sociais. Entendemos que este escopo político-econômico revela uma nova pedagogia da hegemonia, sustentada numa suposta alternativa
    de gerenciamento das novas expressões da “questão social”, voltada para educar o conformismo e ocultar o conflito de classes.
    Palavras-chave:  questão social; novo-desenvolvimentismo; capital social; inclusão forçada

  19. De novo biosynthesis of anthocyanins in Saccharomyces cerevisiae.

    Eichenberger, Michael; Hansson, Anders; Fischer, David; Dürr, Lara; Naesby, Michael

    2018-06-01

    Anthocyanins (ACNs) are plant secondary metabolites responsible for most of the red, purple and blue colors of flowers, fruits and vegetables. They are increasingly used in the food and beverage industry as natural alternative to artificial colorants. Production of these compounds by fermentation of microorganisms would provide an attractive alternative. In this study, Saccharomyces cerevisiae was engineered for de novo production of the three basic anthocyanins, as well as the three main trans-flavan-3-ols. Enzymes from different plant sources were screened and efficient variants found for most steps of the biosynthetic pathway. However, the anthocyanidin synthase was identified as a major obstacle to efficient production. In yeast, this enzyme converts the majority of its natural substrates leucoanthocyanidins into the off-pathway flavonols. Nonetheless, de novo biosynthesis of ACNs was shown for the first time in yeast and for the first time in a single microorganism. It provides a framework for optimizing the activity of anthocyanidin synthase and represents an important step towards sustainable industrial production of these highly relevant molecules in yeast.

  20. Origins of De Novo Genes in Human and Chimpanzee.

    Ruiz-Orera, Jorge; Hernandez-Rodriguez, Jessica; Chiva, Cristina; Sabidó, Eduard; Kondova, Ivanela; Bontrop, Ronald; Marqués-Bonet, Tomàs; Albà, M Mar

    2015-12-01

    The birth of new genes is an important motor of evolutionary innovation. Whereas many new genes arise by gene duplication, others originate at genomic regions that did not contain any genes or gene copies. Some of these newly expressed genes may acquire coding or non-coding functions and be preserved by natural selection. However, it is yet unclear which is the prevalence and underlying mechanisms of de novo gene emergence. In order to obtain a comprehensive view of this process, we have performed in-depth sequencing of the transcriptomes of four mammalian species--human, chimpanzee, macaque, and mouse--and subsequently compared the assembled transcripts and the corresponding syntenic genomic regions. This has resulted in the identification of over five thousand new multiexonic transcriptional events in human and/or chimpanzee that are not observed in the rest of species. Using comparative genomics, we show that the expression of these transcripts is associated with the gain of regulatory motifs upstream of the transcription start site (TSS) and of U1 snRNP sites downstream of the TSS. In general, these transcripts show little evidence of purifying selection, suggesting that many of them are not functional. However, we find signatures of selection in a subset of de novo genes which have evidence of protein translation. Taken together, the data support a model in which frequently-occurring new transcriptional events in the genome provide the raw material for the evolution of new proteins.

  1. A simple method suitable to study de novo root organogenesis

    Xiaodong eChen

    2014-05-01

    Full Text Available De novo root organogenesis is the process in which adventitious roots regenerate from detached or wounded plant tissues or organs. In tissue culture, appropriate types and concentrations of plant hormones in the medium are critical for inducing adventitious roots. However, in natural conditions, regeneration from detached organs is likely to rely on endogenous hormones. To investigate the actions of endogenous hormones and the molecular mechanisms guiding de novo root organogenesis, we developed a simple method to imitate natural conditions for adventitious root formation by culturing Arabidopsis thaliana leaf explants on B5 medium without additive hormones. Here we show that the ability of the leaf explants to regenerate roots depends on the age of the leaf and on certain nutrients in the medium. Based on these observations, we provide examples of how this method can be used in different situations, and how it can be optimized. This simple method could be used to investigate the effects of various physiological and molecular changes on the regeneration of adventitious roots. It is also useful for tracing cell lineage during the regeneration process by differential interference contrast observation of -glucuronidase staining, and by live imaging of proteins labeled with fluorescent tags.

  2. De novo transcriptome assembly of Setatria italica variety Taejin

    Yeonhwa Jo

    2016-06-01

    Full Text Available Foxtail millet (Setaria italica belonging to the family Poaceae is an important millet that is widely cultivated in East Asia. Of the cultivated millets, the foxtail millet has the longest history and is one of the main food crops in South India and China. Moreover, foxtail millet is a model plant system for biofuel generation utilizing the C4 photosynthetic pathway. In this study, we carried out de novo transcriptome assembly for the foxtail millet variety Taejin collected from Korea using next-generation sequencing. We obtained a total of 8.676 GB raw data by paired-end sequencing. The raw data in this study can be available in NCBI SRA database with accession number of SRR3406552. The Trinity program was used to de novo assemble 145,332 transcripts. Using the TransDecoder program, we predicted 82,925 putative proteins. BLASTP was performed against the Swiss-Prot protein sequence database to annotate the functions of identified proteins, resulting in 20,555 potentially novel proteins. Taken together, this study provides transcriptome data for the foxtail millet variety Taejin by RNA-Seq.

  3. De novo transcriptome assembly of the mycoheterotrophic plant Monotropa hypopitys

    Alexey V. Beletsky

    2017-03-01

    Full Text Available Monotropa hypopitys (pinesap is a non-photosynthetic obligately mycoheterotrophic plant of the family Ericaceae. It obtains the carbon and other nutrients from the roots of surrounding autotrophic trees through the associated mycorrhizal fungi. In order to understand the evolutionary changes in the plant genome associated with transition to a heterotrophic lifestyle, we performed de novo transcriptomic analysis of M. hypopitys using next-generation sequencing. We obtained the RNA-Seq data from flowers, flower bracts and roots with haustoria using Illumina HiSeq2500 platform. The raw data obtained in this study can be available in NCBI SRA database with accession number of SRP069226. A total of 10.3 GB raw sequence data were obtained, corresponding to 103,357,809 raw reads. A total of 103,025,683 reads were filtered after removing low-quality reads and trimming the adapter sequences. The Trinity program was used to de novo assemble 98,349 unigens with an N50 of 1342 bp. Using the TransDecoder program, we predicted 43,505 putative proteins. 38,416 unigenes were annotated in the Swiss-Prot protein sequence database using BLASTX. The obtained transcriptomic data will be useful for further studies of the evolution of plant genomes upon transition to a non-photosynthetic lifestyle and the loss of photosynthesis-related functions.

  4. Avaliação da influência da salinidade na germinação, no desenvolvimento e diversidade de microrganismos endofíticos da leguminosa Mucuna aterrima

    Alan Passos Cruz

    2018-02-01

    Full Text Available A utilização de leguminosas é um método visado para a recuperação de fertilidade dos solos, visto que além de fornecerem matéria orgânica também fixam nitrogênio ao solo. Por isso, mostram-se relevantes pesquisas acerca da capacidade das leguminosas para utilização em solos salinos com o intuito de se auxiliar a recuperação destes. Dessa forma, este trabalho teve como objetivo avaliar a influência da salinidade na germinação, no desenvolvimento e no isolamento de microrganismos endofíticos da leguminosa mucuna preta (Mucuna aterrima. O experimento foi realizado com tratamentos de NaCl, em delineamento inteiramente casualizado (5x3 com cinco tratamentos (0,0; 0,025; 0,05; 0,1; 0,2 mol NaCl/L e três repetições. Foram analisados a porcentagem de germinação, a massa seca da raiz, caule e folhas e efetuada a contagem de bactérias e fungos endofíticos. Como resultado, verificou-se uma redução da porcentagem da taxa de germinação com o aumento da salinidade. Apesar de não ser observada interferência na riqueza de microrganismos, verificou-se maior resistência das bactérias à salinidade. Dessa forma, este estudo indica que a mucuna preta não é indicada para plantio em solos com concentrações salinas maiores que 0,1 mol NaCL/L, pois essa concentração apresenta toxicidade para a planta e não favorece sua germinação.

  5. Efeito do espaçamento e do uso de leguminosas de cobertura no manejo de plantas invasoras em reflorestamento de Schizolobium amazonicum Huber ex. Ducke (paricá

    Fabrízia de Oliveira Alvino-Rayol

    2011-06-01

    Full Text Available A infestação crescente de plantas invasoras em áreas de cultivos é um dos fatores que mais afetam os reflorestamentos na Amazônia, causando decréscimos na produtividade devido à competição direta pelos fatores de produção. Tendo isso em vista, este trabalho objetivou avaliar o efeito de espaçamentos (4x2 m, 4x4 m e 4x6 m e do uso de leguminosas de cobertura (Cajanus cajan e Canavalia ensiformis no controle da matocompetição em plantio de Schizolobium amazonicum Huber ex. Ducke (paricá. As coletas das plantas invasoras foram feitas aos 30 e 90 dias após a semeadura das leguminosas de cobertura. Posteriormente foram levadas para herbários para identificação. Foram identificadas 24 espécies distribuídas em 13 famílias botânicas. No que se refere à infestação, diversidade e riqueza de plantas daninhas, os melhores resultados foram encontrados nos tratamentos com C. ensiformis. Esta leguminosa influenciou a composição florística e a estrutura das comunidades de plantas invasoras. O espaçamento 4m x 2m contribuiu para menor diversidade e riqueza dessa plantas. As espécies de ervas daninhas mais frequentes em todos os tratamentos foram Spermacoce capitata e Brachiaria brizantha.

  6. As leguminosas como alimentos funcionais: o caso das dislipidémias e das doenças cardiovasculares Legumes as functional foods: the case of dyslipidemia and cardiovascular diseases

    J.M. Martins

    2007-01-01

    Full Text Available A dieta mediterrânica é rica em alimentos funcionais. As leguminosas, um dos alimentos-chave desta dieta, têm visto o seu papel na prevenção de dislipidémias, diabetes e cancro do cólon mencionado por muitos autores. O efeito do consumo de leguminosas na redução da colesterolémia deve-se a diferentes nutrientes e fitoquímicos, tais como: i proteína; ii lípidos, particularmente a componente polinsaturada e monoinsaturada; iii fibra, especialmente a fracção solúvel; iv saponinas; e v fitosteróis. O consumo da soja tem sido relacionado com tais efeitos benéficos, mas dados recentes obtidos na Universidade de Évora demonstraram que leguminosas como a ervilha e o tremoço de folhas estreitas também apresentam elevado potencial funcional na regulação do colesterol sanguíneo. O seu consumo levou a reduções de 30% na colesterolémia de animais experimentais, via redução do colesterol das LDL. A utilização destas leguminosas como alimentos funcionais e/ou como fornecedoras de fitoquímicos com potencial preventivo e terapêutico é promissora e poderá constituir uma maisvalia e uma fonte extra de rendimento para os agricultores que se dediquem ao cultivo destas espécies.The Mediterranean diet is rich in functional foods. Legumes are one of the key-foods of this diet and many authors mention their role in the prevention of dyslipidemias, diabetes and colon cancer. The hypocholesterolemic effect of legumes is related to several nutrients and phytochemicals. Among them: i protein; ii lipids, especially polyunsaturated and monounsaturated ones; iii dietary fibre, especially soluble fibre; iv saponins; and v phytosterols. Soybean consumption has been related with these benefic effects. However, recent data obtained at the University of Évora have demonstrated that other legumes, such as peas and blue lupin, can also present a high hypocholesterolemic potential. In fact, the consumption of these legumes led to a 30% reduction in

  7. Combined "de novo" and "ex novo" lipid fermentation in a mix-medium of corncob acid hydrolysate and soybean oil by Trichosporon dermatis.

    Huang, Chao; Luo, Mu-Tan; Chen, Xue-Fang; Qi, Gao-Xiang; Xiong, Lian; Lin, Xiao-Qing; Wang, Can; Li, Hai-Long; Chen, Xin-De

    2017-01-01

    Microbial oil is one important bio-product for its important function in energy, chemical, and food industry. Finding suitable substrates is one key issue for its industrial application. Both hydrophilic and hydrophobic substrates can be utilized by oleaginous microorganisms with two different bio-pathways (" de novo " lipid fermentation and " ex novo " lipid fermentation). To date, most of the research on lipid fermentation has focused mainly on only one fermentation pathway and little work was carried out on both " de novo " and " ex novo " lipid fermentation simultaneously; thus, the advantages of both lipid fermentation cannot be fulfilled comprehensively. In this study, corncob acid hydrolysate with soybean oil was used as a mix-medium for combined " de novo " and " ex novo " lipid fermentation by oleaginous yeast Trichosporon dermatis . Both hydrophilic and hydrophobic substrates (sugars and soybean oil) in the medium can be utilized simultaneously and efficiently by T. dermatis . Different fermentation modes were compared and the batch mode was the most suitable for the combined fermentation. The influence of soybean oil concentration, inoculum size, and initial pH on the lipid fermentation was evaluated and 20 g/L soybean oil, 5% inoculum size, and initial pH 6.0 were suitable for this bioprocess. By this technology, the lipid composition of extracellular hydrophobic substrate (soybean oil) can be modified. Although adding emulsifier showed little beneficial effect on lipid production, it can modify the intracellular lipid composition of T. dermatis . The present study proves the potential and possibility of combined " de novo " and " ex novo " lipid fermentation. This technology can use hydrophilic and hydrophobic sustainable bio-resources to generate lipid feedstock for the production of biodiesel or other lipid-based chemical compounds and to treat some special wastes such as oil-containing wastewater.

  8. Interplay between De Novo Biosynthesis and Sequestration of Cyanogenic Glucosides in Arthropods

    Fürstenberg-Hägg, Joel

    (Zygaenidae, Lepidoptera) both sequester (take up and accumulate) the CNglcs linamarin and lotaustralin from their food plants (Fabacea) and biosynthesize them de novo from valine and isoleucine. The presented research demonstrates that de novo biosynthesis of CNglcs in Z. filipendulae is dependent...

  9. 76 FR 68767 - Draft Guidance for Industry and Food and Drug Administration Staff; De Novo Classification...

    2011-11-07

    ... DEPARTMENT OF HEALTH AND HUMAN SERVICES Food and Drug Administration [Docket No. FDA-2011-D-0689] Draft Guidance for Industry and Food and Drug Administration Staff; De Novo Classification Process... for Industry and Food and Drug Administration Staff; De Novo Classification Process (Evaluation of...

  10. De novo mutation in the dopamine transporter gene associates dopamine dysfunction with autism spectrum disorder

    Hamilton, P J; Campbell, N G; Sharma, S

    2013-01-01

    De novo genetic variation is an important class of risk factors for autism spectrum disorder (ASD). Recently, whole-exome sequencing of ASD families has identified a novel de novo missense mutation in the human dopamine (DA) transporter (hDAT) gene, which results in a Thr to Met substitution...

  11. Evaluation of Perennial Forage Legumes and Herbs in Six Mediterranean Environments Evaluación de Leguminosas y Hierbas Forrajeras Perennes en Seis Medioambientes Mediterráneos

    Daniel Real

    2011-09-01

    Full Text Available There is an absence of drought tolerant herbaceous perennial forage legume and herb options other than lucerne (Medicago sativa L. for environments with Mediterranean-like climates common in extensive areas of Southern Australia, the Mediterranean basin, and Chile. Therefore, a collection of 174 forage perennial legume and herb entries from 103 species and 32 genera was evaluated for adaptation in a diverse range of Mediterranean climatic environments in Southern Australia. The seasonal rainfall distribution varied from moderately to highly winter dominant with long term average annual rainfall ranging from 318 to 655 mm. The entries were rated for productivity and persistence over 3 yr. The 12 entries identified as the most promising for winter, summer, or all-year round production included Bituminaria bituminosa (L. C.H. Stirt. var. albomarginata; Cichorium intybus L.; Cullen australasicum (Schltdl. J.W. Grimes; Dorycnium hirsutum (L. Ser.; Kennedia prostrata R. Br.; Lotononis bainesii Baker, Lotus pedunculatus Cav.; L. corniculatus L.; L. cytisoides L.; Medicago sativa subsp. sativa L.; Medicago sativa subsp. caerulea (Less. ex Ledeb. Schmalh., and M. sativa subsp. falcata (L. Arcang. These entries maintained production and persisted for the period of the evaluation, with the exception of C. intybus and L. corniculatus that declined in persistence over time. The potential role of these species in extensive grazing systems in Mediterranean climatic zones, their attributes and limitations, and current progress in developing them as useful forage plants was discussed.Existe una escasez de leguminosas y hierbas perennes herbáceas además de alfalfa (Medicago sativa L. tolerantes a sequía para ambientes con clima mediterráneo como los que se encuentran en el Sur de Australia, el Mediterráneo y Chile. Por lo tanto, una colección de 174 leguminosas perennes y hierbas correspondientes a 103 especies y 32 géneros fue evaluada por su adaptaci

  12. Morfología de la semilla y anatomía de la cubierta seminal de cinco especies de Calliandra (Leguminosae-Mimosoideae de Venezuela

    Sirli Leython

    2008-09-01

    Full Text Available Se estudió la morfología de las semillas y la anatomía de la cubierta seminal en cinco especies venezolanas del género Calliandra, con la finalidad de establecer similitudes y diferencias entre estos taxa, para su utilización como criterio taxonómico. Se analizaron caracteres morfológicos de valor taxonómico; entre ellos la forma y el tamaño de la semilla, así como anatómicos tales como espesor de las diferentes regiones, la ubicación de la línea lúcida y el tamaño relativo de los espacios intercelulares en la hipodermis. Con los resultados se realizaron análisis de agrupamiento por medio de la función de análisis discriminante. Diez caracteres cuantitativos, y tres caracteres cualitativos, resultaron informativos para la separación de especies.Seed morphology and anatomy of the seed coat in five species of Calliandra (Leguminosae-Mimosoideae from Venezuela. Calliandra is an exclusively Neotropoical genus with 135 described species. There are 30 species in Venezuela. We studied seed morphology and the seed coat anatomy of five species: Calliandra riparia Pittier, Calliandra glomerulata Karsten var. glomerulata, Calliandra magdalenae (DC. Benth. var. magdalenae, Calliandra surinamensis Benth. and Calliandra falcata Benth., to establish simililarities and differences amongst taxa for taxonomic characterization. Of the evaluated characters, 10 quantitative characters and 3 qualitative characters were selected as the most informative for the separation of species. Seed morphological characters of taxonomic value are form and size. Thickness of the light line, number of layers and space between the osteosclereids constitute distinctive characters. Rev. Biol. Trop. 56 (3: 1075-1086. Epub 2008 September 30.

  13. Evaluación de diez leguminosas con dos niveles de tecnología en un suelo ácido

    Muñoz F. Jaime E.

    1990-12-01

    Full Text Available El trabajo se realizó durante dos semestres en la zona de Santander de Quilichao, con la finalidad de estudiar el comportamiento agronómico de diez leguminosas en suelos ácidos y sin riego; se empleó un diseño experimental de bloques al azar con arreglo en parcelas divididas con 10 tratamientos y 3 repeticiones. El análisis de varianza y la diferencia mínima significativa (DMS , permitieron comparar dos modalidades de tecnología: el manejo del agricultor y ligeras modificaciones en la fertilización. En los dos ensayos efectuados, no hubo diferencia entre tecnologías, el material de mejor comportamiento en rendimiento fue Caupí TV U 289-46, la menor variabilidad en los rendimientos la presentó el mungo PI 376873; existió mejor comportamiento de los materiales caupí y mungo, respecto a los Phaseolus en suelos ácidos.The present study was carried out during two halfyears at town of Santander de Quilichao (Cauca in order to study agronomic behaviour of ten leguminous in acid soils with and without watering; the experimental design used was the randomized blocks with an arrangement in split plots with 3 replications. The variance analysis and least significant difference aIlowed to compare 2 ways of technology: farmer management and slight modifications in the fertilizations. In two assays done, there were not differences between technologies, the material of best behaviour in yield was TUV 289- 46 cowpea,the smaIIest variability was observed in PI 376873 mungo; a better behaviour was observed in two Cowpea and mungo materials in relation with phaseolus in acid soils.

  14. Crecimiento en longitud foliar y dinámica de población de tallos de cinco asociaciones de gramineas y leguminosa bajo pastoreo

    Rigoberto Castro Rivera

    2013-01-01

    Full Text Available El objetivo del estudio fue determinar la elongación, crecimiento, senescencia, peso y dinámica de tallos de cinco asociaciones conformadas por dos gramíneas y una leguminosa sembradas en diferentes proporciones. Se evaluaron cinco tratamientos: 4:3:3; 4:6:0; 4:0:6; 4:4:2 y 4:2:4 de trébol blanco-ovillo-ballico perenne, los cuales se distribuyeron en 20 unidades experimentales de 104 m2 , en un diseño en bloques completos al azar. La mayor elongación y crecimiento neto de la hoja de las especies evaluadas fue en verano, con 7.1 y 6.53 cm tallo -1 d -1 , para el pasto ovillo, y 7 y 6.7 cm tallo -1 d -1 , para ballico perenne; en trébol blanco no existió diferencia en el recambio de tejido foliar y del peciolo en verano y primavera ( P>0.05. El mayor peso de tallos de ballico perenne y ovillo se registró en verano (0.38g -1 tallo - 1 y las mayores densidades en la época de invierno (9,961 y 10,423 tallos m-2 , respectivamente. El recambio de tejido de las especies evaluadas presentó marcada estacionalidad, siendo más dinámico en verano que en otoño. La asociación de tres especies permitió una mayor dinámica en comparación con la asociación de dos especies.

  15. The use of phylogeny to interpret cross-cultural patterns in plant use and guide medicinal plant discovery: an example from Pterocarpus (Leguminosae).

    Saslis-Lagoudakis, C Haris; Klitgaard, Bente B; Forest, Félix; Francis, Louise; Savolainen, Vincent; Williamson, Elizabeth M; Hawkins, Julie A

    2011-01-01

    The study of traditional knowledge of medicinal plants has led to discoveries that have helped combat diseases and improve healthcare. However, the development of quantitative measures that can assist our quest for new medicinal plants has not greatly advanced in recent years. Phylogenetic tools have entered many scientific fields in the last two decades to provide explanatory power, but have been overlooked in ethnomedicinal studies. Several studies show that medicinal properties are not randomly distributed in plant phylogenies, suggesting that phylogeny shapes ethnobotanical use. Nevertheless, empirical studies that explicitly combine ethnobotanical and phylogenetic information are scarce. In this study, we borrowed tools from community ecology phylogenetics to quantify significance of phylogenetic signal in medicinal properties in plants and identify nodes on phylogenies with high bioscreening potential. To do this, we produced an ethnomedicinal review from extensive literature research and a multi-locus phylogenetic hypothesis for the pantropical genus Pterocarpus (Leguminosae: Papilionoideae). We demonstrate that species used to treat a certain conditions, such as malaria, are significantly phylogenetically clumped and we highlight nodes in the phylogeny that are significantly overabundant in species used to treat certain conditions. These cross-cultural patterns in ethnomedicinal usage in Pterocarpus are interpreted in the light of phylogenetic relationships. This study provides techniques that enable the application of phylogenies in bioscreening, but also sheds light on the processes that shape cross-cultural ethnomedicinal patterns. This community phylogenetic approach demonstrates that similar ethnobotanical uses can arise in parallel in different areas where related plants are available. With a vast amount of ethnomedicinal and phylogenetic information available, we predict that this field, after further refinement of the techniques, will expand into

  16. The use of phylogeny to interpret cross-cultural patterns in plant use and guide medicinal plant discovery: an example from Pterocarpus (Leguminosae.

    C Haris Saslis-Lagoudakis

    Full Text Available The study of traditional knowledge of medicinal plants has led to discoveries that have helped combat diseases and improve healthcare. However, the development of quantitative measures that can assist our quest for new medicinal plants has not greatly advanced in recent years. Phylogenetic tools have entered many scientific fields in the last two decades to provide explanatory power, but have been overlooked in ethnomedicinal studies. Several studies show that medicinal properties are not randomly distributed in plant phylogenies, suggesting that phylogeny shapes ethnobotanical use. Nevertheless, empirical studies that explicitly combine ethnobotanical and phylogenetic information are scarce.In this study, we borrowed tools from community ecology phylogenetics to quantify significance of phylogenetic signal in medicinal properties in plants and identify nodes on phylogenies with high bioscreening potential. To do this, we produced an ethnomedicinal review from extensive literature research and a multi-locus phylogenetic hypothesis for the pantropical genus Pterocarpus (Leguminosae: Papilionoideae. We demonstrate that species used to treat a certain conditions, such as malaria, are significantly phylogenetically clumped and we highlight nodes in the phylogeny that are significantly overabundant in species used to treat certain conditions. These cross-cultural patterns in ethnomedicinal usage in Pterocarpus are interpreted in the light of phylogenetic relationships.This study provides techniques that enable the application of phylogenies in bioscreening, but also sheds light on the processes that shape cross-cultural ethnomedicinal patterns. This community phylogenetic approach demonstrates that similar ethnobotanical uses can arise in parallel in different areas where related plants are available. With a vast amount of ethnomedicinal and phylogenetic information available, we predict that this field, after further refinement of the techniques

  17. EM23, a natural sesquiterpene lactone from Elephantopus mollis H.B.K., induces apoptosis in human myeloid leukemia cells through thioredoxin- and reactive oxygen species-mediated signaling pathways

    Hongyu eLi

    2016-03-01

    Full Text Available Elephantopus mollis H.B.K. (EM is a traditional herbal medicine with multiple pharmacological activities. However, the efficacy of EM in treating human leukemia is currently unknown. In the current study, we report that EM23, a natural sesquiterpene lactone isolated from EM, inhibits the proliferation of human chronic myeloid leukemia K562 cells and acute myeloid leukemia HL-60 cells by inducing apoptosis. Translocation of membrane-associated phospholipid phosphatidylserines, changes in cell morphology, activation of caspases and cleavage of PARP were concomitant with this inhibition. The involvement of the mitochondrial pathway in EM23-mediated apoptosis was suggested by observed disruptions in mitochondrial membrane potential (MMP. Mechanistic studies indicated that EM23 caused a marked increase in the level of reactive oxygen species (ROS. Pretreatment with N-acetyl-L-cysteine (NAC, a ROS scavenger, almost fully reversed EM23-mediated apoptosis. In EM23-treated cells, the expression levels of thioredoxin (Trx and thioredoxinreductase (TrxR, two components of the Trx system involved in maintaining cellular redox homeostasis, were significantly down-regulated. Concomitantly, Trx regulated the activation of apoptosis signal-regulating kinase 1 (ASK1 and its downstream regulatory targets, the p38, JNK, and ERK MAPKs. EM23-mediated activation of ASK1/MAPKs was significantly inhibited in the presence of NAC. Furthermore, tumor necrosis factor alpha (TNF-α-mediated activation of nuclear factor-κB (NF-κB was suppressed by EM23, as suggested by the observed blockage of p65 nuclear translocation, phosphorylation and reversion of IκBα degradation following EM23 treatment. Taken together, these results provide important insights into the anticancer activities of the EM component EM23 against human chronic myeloid leukemia K562 cells and acute myeloid leukemia HL-60 cells.

  18. De novo mutations in synaptic transmission genes including DNM1 cause epileptic encephalopathies

    2014-01-01

    in five individuals and de novo mutations in GABBR2, FASN, and RYR3 in two individuals each. Unlike previous studies, this cohort is sufficiently large to show a significant excess of de novo mutations in epileptic encephalopathy probands compared to the general population using a likelihood analysis (p...... = 8.2 × 10(-4)), supporting a prominent role for de novo mutations in epileptic encephalopathies. We bring statistical evidence that mutations in DNM1 cause epileptic encephalopathy, find suggestive evidence for a role of three additional genes, and show that at least 12% of analyzed individuals have...... analyzed exome-sequencing data of 356 trios with the "classical" epileptic encephalopathies, infantile spasms and Lennox Gastaut syndrome, including 264 trios previously analyzed by the Epi4K/EPGP consortium. In this expanded cohort, we find 429 de novo mutations, including de novo mutations in DNM1...

  19. Genes from scratch--the evolutionary fate of de novo genes.

    Schlötterer, Christian

    2015-04-01

    Although considered an extremely unlikely event, many genes emerge from previously noncoding genomic regions. This review covers the entire life cycle of such de novo genes. Two competing hypotheses about the process of de novo gene birth are discussed as well as the high death rate of de novo genes. Despite the high death rate, some de novo genes are retained and remain functional, even in distantly related species, through their integration into gene networks. Further studies combining gene expression with ribosome profiling in multiple populations across different species will be instrumental for an improved understanding of the evolutionary processes operating on de novo genes. Copyright © 2015 The Author. Published by Elsevier Ltd.. All rights reserved.

  20. Peptide de novo sequencing of mixture tandem mass spectra

    Gorshkov, Vladimir; Hotta, Stéphanie Yuki Kolbeck; Braga, Thiago Verano

    2016-01-01

    they decrease the identification performance using database search engines. De novo sequencing approaches are expected to be even more sensitive to the reduction in mass spectrum quality resulting from peptide precursor co-isolation and thus prone to false identifications. The deconvolution approach matched...... complementary b-, y-ions to each precursor peptide mass, which allowed the creation of virtual spectra containing sequence specific fragment ions of each co-isolated peptide. Deconvolution processing resulted in equally efficient identification rates but increased the absolute number of correctly sequenced...... peptides. The improvement was in the range of 20–35% additional peptide identifications for a HeLa lysate sample. Some correct sequences were identified only using unprocessed spectra; however, the number of these was lower than those where improvement was obtained by mass spectral deconvolution. Tight...

  1. Herpes simplex virus 1 induces de novo phospholipid synthesis

    Sutter, Esther [Electron Microscopy, Institute of Veterinary Anatomy, University of Zuerich (Switzerland); Oliveira, Anna Paula de; Tobler, Kurt [Electron microscopy, Institute of Virology, University of Zuerich (Switzerland); Schraner, Elisabeth M. [Electron Microscopy, Institute of Veterinary Anatomy, University of Zuerich (Switzerland); Sonda, Sabrina [Institute of Parasitology, University of Zuerich (Switzerland); Kaech, Andres [Center for Microscopy and Image Analysis, University of Zuerich (Switzerland); Lucas, Miriam S. [Electron Microscopy ETH Zuerich (EMEZ), Swiss Federal Institute of Technology, Zuerich (Switzerland); Ackermann, Mathias [Electron microscopy, Institute of Virology, University of Zuerich (Switzerland); Wild, Peter, E-mail: pewild@access.uzh.ch [Electron Microscopy, Institute of Veterinary Anatomy, University of Zuerich (Switzerland)

    2012-08-01

    Herpes simplex virus type 1 capsids bud at nuclear membranes and Golgi membranes acquiring an envelope composed of phospholipids. Hence, we measured incorporation of phospholipid precursors into these membranes, and quantified changes in size of cellular compartments by morphometric analysis. Incorporation of [{sup 3}H]-choline into both nuclear and cytoplasmic membranes was significantly enhanced upon infection. [{sup 3}H]-choline was also part of isolated virions even grown in the presence of brefeldin A. Nuclei expanded early in infection. The Golgi complex and vacuoles increased substantially whereas the endoplasmic reticulum enlarged only temporarily. The data suggest that HSV-1 stimulates phospholipid synthesis, and that de novo synthesized phospholipids are inserted into nuclear and cytoplasmic membranes to i) maintain membrane integrity in the course of nuclear and cellular expansion, ii) to supply membrane constituents for envelopment of capsids by budding at nuclear membranes and Golgi membranes, and iii) to provide membranes for formation of transport vacuoles.

  2. De-novo design of antimicrobial peptides for plant protection.

    Benjamin Zeitler

    Full Text Available This work describes the de-novo design of peptides that inhibit a broad range of plant pathogens. Four structurally different groups of peptides were developed that differ in size and position of their charged and hydrophobic clusters and were assayed for their ability to inhibit bacterial growth and fungal spore germination. Several peptides are highly active at concentrations between 0,1 and 1 µg/ml against plant pathogenic bacteria, such as Pseudomonas syringae, Pectobacterium carotovorum, and Xanthomonas vesicatoria. Importantly, no hemolytic activity could be detected for these peptides at concentrations up to 200 µg/ml. Moreover, the peptides are also active after spraying on the plant surface demonstrating a possible way of application. In sum, our designed peptides represent new antimicrobial agents and with the increasing demand for antimicrobial compounds for production of "healthy" food, these peptides might serve as templates for novel antibacterial and antifungal agents.

  3. De novo SOX11 mutations cause Coffin-Siris syndrome.

    Tsurusaki, Yoshinori; Koshimizu, Eriko; Ohashi, Hirofumi; Phadke, Shubha; Kou, Ikuyo; Shiina, Masaaki; Suzuki, Toshifumi; Okamoto, Nobuhiko; Imamura, Shintaro; Yamashita, Michiaki; Watanabe, Satoshi; Yoshiura, Koh-ichiro; Kodera, Hirofumi; Miyatake, Satoko; Nakashima, Mitsuko; Saitsu, Hirotomo; Ogata, Kazuhiro; Ikegawa, Shiro; Miyake, Noriko; Matsumoto, Naomichi

    2014-06-02

    Coffin-Siris syndrome (CSS) is a congenital disorder characterized by growth deficiency, intellectual disability, microcephaly, characteristic facial features and hypoplastic nails of the fifth fingers and/or toes. We previously identified mutations in five genes encoding subunits of the BAF complex, in 55% of CSS patients. Here we perform whole-exome sequencing in additional CSS patients, identifying de novo SOX11 mutations in two patients with a mild CSS phenotype. sox11a/b knockdown in zebrafish causes brain abnormalities, potentially explaining the brain phenotype of CSS. SOX11 is the downstream transcriptional factor of the PAX6-BAF complex, highlighting the importance of the BAF complex and SOX11 transcriptional network in brain development.

  4. De novo transcriptome assembly of shrimp Palaemon serratus

    Alejandra Perina

    2017-03-01

    Full Text Available The shrimp Palaemon serratus is a coastal decapod crustacean with a high commercial value. It is harvested for human consumption. In this study, we used Illumina sequencing technology (HiSeq 2000 to sequence, assemble and annotate the transcriptome of P. serratus. RNA was isolated from muscle of adults individuals and, from a pool of larvae. A total number of 4 cDNA libraries were constructed, using the TruSeq RNA Sample Preparation Kit v2. The raw data in this study was deposited in NCBI SRA database with study accession number of SRP090769. The obtained data were subjected to de novo transcriptome assembly using Trinity software, and coding regions were predicted by TransDecoder. We used Blastp and Sma3s to annotate the identified proteins. The transcriptome data could provide some insight into the understanding of genes involved in the larval development and metamorphosis.

  5. De novo assembly of a haplotype-resolved human genome.

    Cao, Hongzhi; Wu, Honglong; Luo, Ruibang; Huang, Shujia; Sun, Yuhui; Tong, Xin; Xie, Yinlong; Liu, Binghang; Yang, Hailong; Zheng, Hancheng; Li, Jian; Li, Bo; Wang, Yu; Yang, Fang; Sun, Peng; Liu, Siyang; Gao, Peng; Huang, Haodong; Sun, Jing; Chen, Dan; He, Guangzhu; Huang, Weihua; Huang, Zheng; Li, Yue; Tellier, Laurent C A M; Liu, Xiao; Feng, Qiang; Xu, Xun; Zhang, Xiuqing; Bolund, Lars; Krogh, Anders; Kristiansen, Karsten; Drmanac, Radoje; Drmanac, Snezana; Nielsen, Rasmus; Li, Songgang; Wang, Jian; Yang, Huanming; Li, Yingrui; Wong, Gane Ka-Shu; Wang, Jun

    2015-06-01

    The human genome is diploid, and knowledge of the variants on each chromosome is important for the interpretation of genomic information. Here we report the assembly of a haplotype-resolved diploid genome without using a reference genome. Our pipeline relies on fosmid pooling together with whole-genome shotgun strategies, based solely on next-generation sequencing and hierarchical assembly methods. We applied our sequencing method to the genome of an Asian individual and generated a 5.15-Gb assembled genome with a haplotype N50 of 484 kb. Our analysis identified previously undetected indels and 7.49 Mb of novel coding sequences that could not be aligned to the human reference genome, which include at least six predicted genes. This haplotype-resolved genome represents the most complete de novo human genome assembly to date. Application of our approach to identify individual haplotype differences should aid in translating genotypes to phenotypes for the development of personalized medicine.

  6. Application of Generative Autoencoder in De Novo Molecular Design.

    Blaschke, Thomas; Olivecrona, Marcus; Engkvist, Ola; Bajorath, Jürgen; Chen, Hongming

    2018-01-01

    A major challenge in computational chemistry is the generation of novel molecular structures with desirable pharmacological and physiochemical properties. In this work, we investigate the potential use of autoencoder, a deep learning methodology, for de novo molecular design. Various generative autoencoders were used to map molecule structures into a continuous latent space and vice versa and their performance as structure generator was assessed. Our results show that the latent space preserves chemical similarity principle and thus can be used for the generation of analogue structures. Furthermore, the latent space created by autoencoders were searched systematically to generate novel compounds with predicted activity against dopamine receptor type 2 and compounds similar to known active compounds not included in the trainings set were identified. © 2018 The Authors. Published by Wiley-VCH Verlag GmbH & Co. KGaA.

  7. De novo development of artistic creativity in Alzheimer's disease.

    Chakravarty, Ambar

    2011-10-01

    The case of an 82-year-old female with probable Alzheimer's disease (AD), who developed unusual artistic creativity after development of her disease, is described. The possible pathogenetic mechanism is discussed. The patient showed no inclination toward visual arts during her premorbid years. However, 4 years after development of AD suggestive symptoms she started painting beautiful pictures rather impulsively. Some such paintings have been appreciated even by a qualified art expert. Such de novo development of artistic creativity had been described earlier in subjects with the semantic form of fronto-temporal dementia (FTD), but not in AD. The prevailing concept of lateralized compromise and paradoxical functional facilitation, proposed in connection with FTD subjects, may not be applicable in AD subjects where the affection is more diffuse and more posterior in the brain. Hence, the likely pathogenetic mechanism involved in the case described may remain uncertain. Possibilities are discussed.

  8. Novo teste para diagnóstico das afasias

    José G. Albernaz

    1953-06-01

    Full Text Available Um novo teste para diagnóstico e contrôle do tratamento das diferentes formas de afasia, especialmente adaptado para a língua portuguêsa, é apresentado e descrito em detalhe. O teste, que será de valor para clínicos e psicólogos interessados no tratamento e reabilitação de pacientes afásicos, se executa em cêrca de 30 minutos, interpreta-se fàcilmente e fornece os elementos necessários para o planejamento da reeducação da linguagem. Além disso, a repetição do teste de tempos em tempos indicará os progressos do paciente e sugerirá modificações do plano de tratamento no momento oportuno.

  9. De novo identification of viral pathogens from cell culture hologenomes

    Patowary Ashok

    2012-01-01

    Full Text Available Abstract Background Fast, specific identification and surveillance of pathogens is the cornerstone of any outbreak response system, especially in the case of emerging infectious diseases and viral epidemics. This process is generally tedious and time-consuming thus making it ineffective in traditional settings. The added complexity in these situations is the non-availability of pure isolates of pathogens as they are present as mixed genomes or hologenomes. Next-generation sequencing approaches offer an attractive solution in this scenario as it provides adequate depth of sequencing at fast and affordable costs, apart from making it possible to decipher complex interactions between genomes at a scale that was not possible before. The widespread application of next-generation sequencing in this field has been limited by the non-availability of an efficient computational pipeline to systematically analyze data to delineate pathogen genomes from mixed population of genomes or hologenomes. Findings We applied next-generation sequencing on a sample containing mixed population of genomes from an epidemic with appropriate processing and enrichment. The data was analyzed using an extensive computational pipeline involving mapping to reference genome sets and de-novo assembly. In depth analysis of the data generated revealed the presence of sequences corresponding to Japanese encephalitis virus. The genome of the virus was also independently de-novo assembled. The presence of the virus was in addition, verified using standard molecular biology techniques. Conclusions Our approach can accurately identify causative pathogens from cell culture hologenome samples containing mixed population of genomes and in principle can be applied to patient hologenome samples without any background information. This methodology could be widely applied to identify and isolate pathogen genomes and understand their genomic variability during outbreaks.

  10. The limits of de novo DNA motif discovery.

    David Simcha

    Full Text Available A major challenge in molecular biology is reverse-engineering the cis-regulatory logic that plays a major role in the control of gene expression. This program includes searching through DNA sequences to identify "motifs" that serve as the binding sites for transcription factors or, more generally, are predictive of gene expression across cellular conditions. Several approaches have been proposed for de novo motif discovery-searching sequences without prior knowledge of binding sites or nucleotide patterns. However, unbiased validation is not straightforward. We consider two approaches to unbiased validation of discovered motifs: testing the statistical significance of a motif using a DNA "background" sequence model to represent the null hypothesis and measuring performance in predicting membership in gene clusters. We demonstrate that the background models typically used are "too null," resulting in overly optimistic assessments of significance, and argue that performance in predicting TF binding or expression patterns from DNA motifs should be assessed by held-out data, as in predictive learning. Applying this criterion to common motif discovery methods resulted in universally poor performance, although there is a marked improvement when motifs are statistically significant against real background sequences. Moreover, on synthetic data where "ground truth" is known, discriminative performance of all algorithms is far below the theoretical upper bound, with pronounced "over-fitting" in training. A key conclusion from this work is that the failure of de novo discovery approaches to accurately identify motifs is basically due to statistical intractability resulting from the fixed size of co-regulated gene clusters, and thus such failures do not necessarily provide evidence that unfound motifs are not active biologically. Consequently, the use of prior knowledge to enhance motif discovery is not just advantageous but necessary. An implementation of

  11. Cinema utópico: a construção de um novo homem e um novo mundo

    Erika Savernini Lopes

    2011-01-01

    O cinema, desde seus primórdios, prefigurou o espaço cibernético como um novo espaço imaterial construído coletivamente. A concepção desse outro lugar não físico para o qual o homem poderia migrar estabelece para o cinema e para o ciberespaço uma relação direta com as utopias. Na acepção do romance filosófico de Thomas More, a Utopia define-se como um outro espaço não-existente, irrealizável e ideal que diagnostica o atual. O cinema carregaria caracteres fundamentais da Utopia tanto no que se...

  12. Características morfológicas e produtivas de leguminosas forrageiras tropicais submetidas a duas frequências de corte Morphologic and productive characteristics of tropical forage legumes under two harvest frequencies

    Valdson José da Silva

    2010-01-01

    Full Text Available Objetivou-se com este trabalho avaliar características morfológicas e produtivas de leguminosas forrageiras submetidas a duas frequências de corte (28 e 56 dias a altura de 10 cm. Foram avaliadas as seguintes espécies: Arachis pintoi (cv. Amarillo, Clitoria ternatea, Calopogonium mucunoides, Desmodium ovalifolium (cv. Itabela e Stylosanthes guianensis (cvs. Bandeirante, Cook, Mineirão. O delineamento utilizado foi o inteiramente casualizado em arranjo fatorial (7 leguminosas × 2 frequências de corte com quatro repetições, para avaliação das seguintes variáveis: acúmulo de biomassa, número de ramificações/planta, número de folhas vivas/planta, massa seca das raízes, número e massa seca dos nódulos. A produção acumulada de MS da parte aérea e das raízes foi equivalente para os cortes efetuados a cada 28 dias ou a cada 56 dias, com exceção do Arachis, Clitoria e Desmodium, que apresentaram maior biomassa aérea e de raízes no intervalo de corte de 56 dias. Houve diferenças entre leguminosas quanto à massa seca e ao número de nódulos, todavia, o maior número de nódulos foi observado na frequência de 56 dias. O número de folhas vivas/planta foi maior na frequência de 56 dias, com exceção das leguminosas Arachis e Calopogonium, cujos valores foram próximos quando cortadas nas diferentes frequências. A frequência de corte afetou de forma diferenciada as características morfológicas e produtivas das leguminosas estudadas, o que indica a necessidade de manejo diferenciado para as variedades testadas.The objective of this research was to evaluate morphological and productive characteristics of forage legumes under two harvest frequencies (28 and 56 days and 10 cm harvest intensity. The following legume species were evaluated: Arachis pintoi (cv. Amarillo, Clitoria ternatea, Calopogonium mucunoides, Desmodium ovalifolium (cv. Itabela and Stylosanthes guianensis (cvs. Bandeirante, Cook, Mineirão. A randomized

  13. On the Origin of De Novo Genes in Arabidopsis thaliana Populations.

    Li, Zi-Wen; Chen, Xi; Wu, Qiong; Hagmann, Jörg; Han, Ting-Shen; Zou, Yu-Pan; Ge, Song; Guo, Ya-Long

    2016-08-03

    De novo genes, which originate from ancestral nongenic sequences, are one of the most important sources of protein-coding genes. This origination process is crucial for the adaptation of organisms. However, how de novo genes arise and become fixed in a population or species remains largely unknown. Here, we identified 782 de novo genes from the model plant Arabidopsis thaliana and divided them into three types based on the availability of translational evidence, transcriptional evidence, and neither transcriptional nor translational evidence for their origin. Importantly, by integrating multiple types of omics data, including data from genomes, epigenomes, transcriptomes, and translatomes, we found that epigenetic modifications (DNA methylation and histone modification) play an important role in the origination process of de novo genes. Intriguingly, using the transcriptomes and methylomes from the same population of 84 accessions, we found that de novo genes that are transcribed in approximately half of the total accessions within the population are highly methylated, with lower levels of transcription than those transcribed at other frequencies within the population. We hypothesized that, during the origin of de novo gene alleles, those neutralized to low expression states via DNA methylation have relatively high probabilities of spreading and becoming fixed in a population. Our results highlight the process underlying the origin of de novo genes at the population level, as well as the importance of DNA methylation in this process. © The Author 2016. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

  14. Glucagon infusion increases rate of purine synthesis de novo in rat liver

    Itakura, Mitsuo; Maeda, Noriaki; Tsuchiya, Masami; Yamashita, Kamejiro

    1987-01-01

    Based on the parallel increases of glucagon, the second peak of hepatic cAMP, and the rate of purine synthesis de novo in the prereplicative period in regenerating rate liver after a 70% hepatectomy, it was hypothesized that glucagon is responsible for the increased rate of purine synthesis de novo. To test this hypothesis, the effect of glucagon or dibutyryl cAMP infusion on the rate of purine synthesis de novo in rat liver was studied. Glucagon infusion but not insulin or glucose infusion increased the rate of purine synthesis de novo, which was assayed by [ 14 C]glycine or [ 14 C]formate incorporation, by 2.7- to 4.3-fold. Glucagon infusion increased cAMP concentrations by 4.9-fold and 5-phosphoribosyl-1-pyrophosphate concentrations by 1.5-fold in liver but did not change the specific activity of amidophosphoribosyltransferase or purine ribonucleotide concentrations. Dibutyryl cAMP infusion also increased the rate of purine synthesis de novo by 2.2- to 4.0-fold. Because glucagon infusion increased the rate of purine synthesis de novo in the presence of unchanged purine ribonucleotide concentrations, it is concluded that glucagon after infusion or in animals after a 70% hepatectomy is playing an anabolic role to increase the rate of purine synthesis de novo by increasing cAMP and 5-phosphoribosyl-1-pyrophosphate concentrations

  15. Role of de novo biosynthesis in ecosystem scale monoterpene emissions from a boreal Scots pine forest

    R. Taipale

    2011-08-01

    Full Text Available Monoterpene emissions from Scots pine have traditionally been assumed to originate as evaporation from specialized storage pools. More recently, the significance of de novo emissions, originating directly from monoterpene biosynthesis, has been recognized. To study the role of biosynthesis at the ecosystem scale, we measured monoterpene emissions from a Scots pine dominated forest in southern Finland using the disjunct eddy covariance method combined with proton transfer reaction mass spectrometry. The interpretation of the measurements was based on a correlation analysis and a hybrid emission algorithm describing both de novo and pool emissions. During the measurement period May–August 2007, the monthly medians of daytime emissions were 200, 290, 180, and 200 μg m−2 h−1. The emissions were partly light dependent, probably due to de novo biosynthesis. The emission potential for both de novo and pool emissions exhibited a decreasing summertime trend. The ratio of the de novo emission potential to the total emission potential varied between 30 % and 46 %. Although the monthly changes were not significant, the ratio always differed statistically from zero, suggesting that the role of de novo biosynthesis was observable. Given the uncertainties in this study, we conclude that more accurate estimates of the contribution of de novo emissions are required for improving monoterpene emission algorithms for Scots pine dominated forests.

  16. Sequencing and de novo assembly of 150 genomes from Denmark as a population reference

    Maretty, Lasse; Jensen, Jacob Malte; Petersen, Bent

    2017-01-01

    or by performing local assembly. However, these approaches are biased against discovery of structural variants and variation in the more complex parts of the genome. Hence, large-scale de novo assembly is needed. Here we show that it is possible to construct excellent de novo assemblies from high......-coverage sequencing with mate-pair libraries extending up to 20 kilobases. We report de novo assemblies of 150 individuals (50 trios) from the GenomeDenmark project. The quality of these assemblies is similar to those obtained using the more expensive long-read technology. We use the assemblies to identify a rich set...

  17. Eculizumab for drug-induced de novo posttransplantation thrombotic microangiopathy: A case report.

    Safa, Kassem; Logan, Merranda S; Batal, Ibrahim; Gabardi, Steven; Rennke, Helmut G; Abdi, Reza

    2015-02-01

    De novo thrombotic microangiopathy (TMA) following renal transplantation is a severe complication associated with high rates of allograft failure. Several immunosuppressive agents are associated with TMA. Conventional approaches to managing this entity, such as withdrawal of the offending agent and/or plasmapheresis, often offer limited help, with high rates of treatment failure and graft loss. We herein report a case of drug induced de novo TMA successfully treated using the C5a inhibitor eculizumab in a renal transplant patient. This report highlights a potentially important role for eculizumab in settings where drug-induced de novo TMA is refractory to conventional therapies.

  18. De novo assembly and phasing of a Korean human genome.

    Seo, Jeong-Sun; Rhie, Arang; Kim, Junsoo; Lee, Sangjin; Sohn, Min-Hwan; Kim, Chang-Uk; Hastie, Alex; Cao, Han; Yun, Ji-Young; Kim, Jihye; Kuk, Junho; Park, Gun Hwa; Kim, Juhyeok; Ryu, Hanna; Kim, Jongbum; Roh, Mira; Baek, Jeonghun; Hunkapiller, Michael W; Korlach, Jonas; Shin, Jong-Yeon; Kim, Changhoon

    2016-10-13

    Advances in genome assembly and phasing provide an opportunity to investigate the diploid architecture of the human genome and reveal the full range of structural variation across population groups. Here we report the de novo assembly and haplotype phasing of the Korean individual AK1 (ref. 1) using single-molecule real-time sequencing, next-generation mapping, microfluidics-based linked reads, and bacterial artificial chromosome (BAC) sequencing approaches. Single-molecule sequencing coupled with next-generation mapping generated a highly contiguous assembly, with a contig N50 size of 17.9 Mb and a scaffold N50 size of 44.8 Mb, resolving 8 chromosomal arms into single scaffolds. The de novo assembly, along with local assemblies and spanning long reads, closes 105 and extends into 72 out of 190 euchromatic gaps in the reference genome, adding 1.03 Mb of previously intractable sequence. High concordance between the assembly and paired-end sequences from 62,758 BAC clones provides strong support for the robustness of the assembly. We identify 18,210 structural variants by direct comparison of the assembly with the human reference, identifying thousands of breakpoints that, to our knowledge, have not been reported before. Many of the insertions are reflected in the transcriptome and are shared across the Asian population. We performed haplotype phasing of the assembly with short reads, long reads and linked reads from whole-genome sequencing and with short reads from 31,719 BAC clones, thereby achieving phased blocks with an N50 size of 11.6 Mb. Haplotigs assembled from single-molecule real-time reads assigned to haplotypes on phased blocks covered 89% of genes. The haplotigs accurately characterized the hypervariable major histocompatability complex region as well as demonstrating allele configuration in clinically relevant genes such as CYP2D6. This work presents the most contiguous diploid human genome assembly so far, with extensive investigation of

  19. Leaves and fruits of Bauhinia (Leguminosae, Caesalpinioideae, Cercideae) from the Oligocene Ningming Formation of Guangxi, South China and their biogeographic implications.

    Wang, Qi; Song, Zhuqiu; Chen, Yunfa; Shen, Si; Li, Zhenyu

    2014-04-24

    The pantropical genus Bauhinia, along with the northern temperate Cercis and several tropical genera, bear bilobate, bifoliolate, or sometimes unifoliolate leaves, which constitute the tribe Cercideae as sister to the rest of the family Leguminosae based on molecular phylogenetics. Hence, the fossil record of Cercideae is pivotal to understand the early evolution and biogeographic history of legumes. Three fossil species of Bauhinia were described from the Oligocene Ningming Formation of Guangxi, South China. Bauhinia ningmingensis sp. nov. is characterized by its bifoliolate, pulvinate leaves bearing basal acrodromous primary veins and brochidodromous secondary veins. B. cheniae sp. nov. bears moderately or deeply bilobate, pulvinate leaves, with basal actinodromous primary veins and eucamptodromous secondary veins. B. larsenii D.X. Zhang et Y.F. Chen emend. possesses shallowly or moderately bilobate, pulvinate leaves bearing basal actinodromous primary veins and brochidodromous secondary veins, as well as elliptic, stipitate, non-winged, and oligo-seeded fruits. Meanwhile, previously reported Bauhinia fossils were reviewed, and those pre-Oligocene foliage across the world are either questionable or have been rejected due to lacking of reliable evidence for their pulvini or/and basal actinodromous or acrodromous venations. Besides Oligocene leaves and fruits presented here, foliage and/or wood of Bauhinia have been documented from the Miocene-Pliocene of Thailand, India, Nepal, Uganda, and Ecuador. Bauhinia has exhibited a certain diversity with bifoliolate- and bilobate-leafed species in a low-latitude locality-Ningming since at least the Oligocene, implying that the tropical zone of South China may represent one of the centres for early diversification of the genus. The reliable macrofossils of Bauhinia and Cercis have made their debut in the Eocene-Oligocene floras from mid-low latitudes and appeared to lack in the coeval floras at high latitudes, implying a

  20. Levantamento fitogeográfico de Dalbergia L.f. (Leguminosae-papilionoideae com potencial produtivo para própolis vermelha no Estado do Pará

    Raquel Leão Santos

    2017-07-01

    Full Text Available O gênero Dalbergia L.f. (Leguminosae-Papilionoideae, de distribuição pantropical, compreende cerca de 250 espécies.  Dalbergia spp tem sido amplamente explorada para produção de própolis vermelha, que consiste em uma mistura complexa feita pelas abelhas a partir do material resinoso encontrado no tecido meristemático em várias plantas deste gênero. Este trabalho tem por objetivo realizar levantamento da ocorrência da flora apícola produtora de exsudato vermelho que pode ser utilizada pelas abelhas africanizadas para produção da própolis vermelha no estado do Pará. Realizou-se o levantamento em diversos herbários que possuíam espécies de Dalbergia L.f. produtoras de exsudato vermelho no estado do Pará, juntamente com a sua distribuição. Para tanto, foram averiguadas literaturas específicas de morfologia e taxonomia que envolviam espécies de Dalbergia produtoras de exsudato vermelho localizadas no Pará. A coleta de dados foi obtida a partir da plataforma online SpeciesLink; e do acervo do Herbário IAN (Instituto Agronômico do Norte da EMBRAPA Amazônia Oriental. O mapa de distribuição foi elaborado utilizando o software QGis juntamente com os dados de coleta das espécies. Foram encontrados 204 registros depositados em 21 herbários, sendo que, 175 são pertencentes à espécie Dalbergia monetaria e 29 à Dalbergia ecastaphyllum. Analisando os dados de coleta, notou-se que as espécies foram coletadas em 44 municípios do Estado do Pará, dos quais Belém e Bragança apresentaram maior quantidade de registros. A partir do levantamento realizado notou-se a predominância de Dalbergia monetaria nos registros, mostrando que esta é uma espécie que possui potencial para ser explorada. 

  1. Leguminosas isoladas e consorciadas com milheto em diferentes sistemas de manejo do solo no feijão orgânico

    Marisol Rivero Herrada

    2017-10-01

    Full Text Available Vários estudos têm demonstrado as vantagens da utilização de plantas de cobertura em manter ou melhorar a qualidade do solo e produtividade da cultura. No entanto, os efeitos dessa gestão em feijão comum orgânico em condições de savana, ainda são desconhecidos. Este estudo teve como objetivo avaliar o efeito de leguminosas, mucuna (Mucuna pruriens (L. DC, feijão guandu (Cajanus cajan L. HUTH, feijão de porco (Canavalia ensiformis, crotalária (Crotalária juncea em monocultura e em consórcio com milheto (Pennisetum glaucum L. R. Br. de 1810, na produção de grãos no feijoeiro comum em sistema orgânico de produção sob o sistema do manejo do solo convencional e plantio direto. O experimento foi realizado com a cultivar BRS Pontal, em um delineamento em blocos casualizados. Aos 90 dias após a germinação das plantas de feijão foram avaliadas, o número de vagens por planta (NVP, número de grãos por vagem (NGV, número de grãos por planta (NGP , peso de 100 grãos (M100G e produção de grãos. Os resultados mostraram que o número de vagens, número de grãos e produtividade do feijoeiro no sistema orgânico, foram influenciados pelas culturas de cobertura do solo e sistemas manejo do solo, com destaque para mucuna associados com milheto e sistema de plantio direto, que proporcionou o melhor desempenho destes parâmetros. A maior produção de grãos foi observado com a mucuna associados com milho em sistema de plantio direto. A produtividade média de grãos orgânicos foi de 3.8 Mg ha-1. A análise de agrupamento mostrou um efeito marcante de sistemas de manejo do solo sobre os componentes de produção do feijoeiro.

  2. Variabilidade espacial de atributos físicos de um argissolo vermelho-amarelo cultivado com leguminosas consorciada com a seringueira

    Sidney Rosa Vieira

    2010-01-01

    Full Text Available O objetivo deste trabalho foi avaliar a distribuição espacial de alguns atributos físicos do solo e verificar suas alterações no desenvolvimento da seringueira consorciada com leguminosas. O experimento foi instalado em Argissolo Vermelho-Amarelo no Polo Regional de Desenvolvimento Tecnológico dos Agronegócios do Centro-Norte, localizado em Pindorama (SP. Foram avaliadas: infiltração de água a 0,10 e a 0,20 m de profundidade, macro e micro porosidade e densidade do solo nas camadas 0-0,10; 0,10-0,20; 0,20-0,40 e 0,40-0,60 m. O desenvolvimento das plantas de seringueira foi avaliado medindo-se o perímetro do caule e o aumento desta medida no período de quatro anos (1996-1999. Os dados foram submetidos à análise de estatística descritiva para verificação de parâmetros de tendência central e dispersão. Foram utilizados métodos geoestatísticos incluindo semivariogramas, krigagem e mapas de isolinhas para a avaliação da variabilidade espacial. Houve dependência espacial de moderada a forte para todos os atributos do solo, com o valor do alcance variando entre 15 e 90 m. A dependência espacial anotada para infiltração de água no solo não teve relação com as avaliações efetuadas nas plantas nem com os outros atributos avaliados. Os altos valores de densidade do solo e de microporosidade na camada de 0,20-0,40 m indicaram a ocorrência de compactação nesta camada. O perímetro do caule de seringueira aumentou linearmente com o tempo, porém a taxa de crescimento do perímetro do caule decresceu ao longo dos anos. A taxa média de crescimento do perímetro do caule variou em função do crescimento menor no inverno quando comparado com o do verão. Na distribuição espacial do espessamento do caule das árvores de seringueira ao longo do tempo houve alta continuidade, avaliada pelos baixos valores do efeito pepita dos semivariogramas e estreita correlação com densidade do solo, onde locais menos densos tiveram os

  3. De novo transcriptome assembly of mangosteen (Garcinia mangostana L. fruit

    Deden Derajat Matra

    2016-12-01

    Full Text Available Garcinia mangostana L. (Mangosteen, of the family Clusiaceae, is one of the economically important tropical fruits in Indonesia. In the present study, we performed de novo transcriptomic analysis of Garcinia mangostana L. through RNA-Seq technology. We obtained the raw data from 12 libraries through Ion Proton System. Clean reads of 191,735,809 were obtained from 307,634,890 raw reads. The raw data obtained in this study can be accessible in DDBJ database with accession number of DRA005014 with bioproject accession number of PRJDB5091. We obtained 268,851 transcripts as well as 155,850 unigenes, having N50 value of 555 and 433 bp, respectively. Transcript/unigene length ranged from 201 to 5916 bp. The unigenes were annotated with two main databases from NCBI and UniProtKB, respectively having annotated-sequences of 73,287 and 73,107, respectively. These transcriptomic data will be beneficial for studying transcriptome of Garcinia mangostana L.

  4. Massively parallel de novo protein design for targeted therapeutics

    Chevalier, Aaron; Silva, Daniel-Adriano; Rocklin, Gabriel J.; Hicks, Derrick R.; Vergara, Renan; Murapa, Patience; Bernard, Steffen M.; Zhang, Lu; Lam, Kwok-Ho; Yao, Guorui; Bahl, Christopher D.; Miyashita, Shin-Ichiro; Goreshnik, Inna; Fuller, James T.; Koday, Merika T.; Jenkins, Cody M.; Colvin, Tom; Carter, Lauren; Bohn, Alan; Bryan, Cassie M.; Ferná ndez-Velasco, D. Alejandro; Stewart, Lance; Dong, Min; Huang, Xuhui; Jin, Rongsheng; Wilson, Ian A.; Fuller, Deborah H.; Baker, David

    2017-01-01

    De novo protein design holds promise for creating small stable proteins with shapes customized to bind therapeutic targets. We describe a massively parallel approach for designing, manufacturing and screening mini-protein binders, integrating large-scale computational design, oligonucleotide synthesis, yeast display screening and next-generation sequencing. We designed and tested 22,660 mini-proteins of 37-43 residues that target influenza haemagglutinin and botulinum neurotoxin B, along with 6,286 control sequences to probe contributions to folding and binding, and identified 2,618 high-affinity binders. Comparison of the binding and non-binding design sets, which are two orders of magnitude larger than any previously investigated, enabled the evaluation and improvement of the computational model. Biophysical characterization of a subset of the binder designs showed that they are extremely stable and, unlike antibodies, do not lose activity after exposure to high temperatures. The designs elicit little or no immune response and provide potent prophylactic and therapeutic protection against influenza, even after extensive repeated dosing.

  5. Sequencing and De Novo Transcriptome Assembly of Brachypodium sylvaticum (Poaceae

    Samuel E. Fox

    2013-03-01

    Full Text Available Premise of the study: We report the de novo assembly and characterization of the transcriptomes of Brachypodium sylvaticum (slender false-brome accessions from native populations of Spain and Greece, and an invasive population west of Corvallis, Oregon, USA. Methods and Results: More than 350 million sequence reads from the mRNA libraries prepared from three B. sylvaticum genotypes were assembled into 120,091 (Corvallis, 104,950 (Spain, and 177,682 (Greece transcript contigs. In comparison with the B. distachyon Bd21 reference genome and GenBank protein sequences, we estimate >90% exome coverage for B. sylvaticum. The transcripts were assigned Gene Ontology and InterPro annotations. Brachypodium sylvaticum sequence reads aligned against the Bd21 genome revealed 394,654 single-nucleotide polymorphisms (SNPs and >20,000 simple sequence repeat (SSR DNA sites. Conclusions: To our knowledge, this is the first report of transcriptome sequencing of invasive plant species with a closely related sequenced reference genome. The sequences and identified SNP variant and SSR sites will provide tools for developing novel genetic markers for use in genotyping and characterization of invasive behavior of B. sylvaticum.

  6. LESSONS IN DE NOVO PEPTIDE SEQUENCING BY TANDEM MASS SPECTROMETRY

    Medzihradszky, Katalin F.; Chalkley, Robert J.

    2015-01-01

    Mass spectrometry has become the method of choice for the qualitative and quantitative characterization of protein mixtures isolated from all kinds of living organisms. The raw data in these studies are MS/MS spectra, usually of peptides produced by proteolytic digestion of a protein. These spectra are “translated” into peptide sequences, normally with the help of various search engines. Data acquisition and interpretation have both been automated, and most researchers look only at the summary of the identifications without ever viewing the underlying raw data used for assignments. Automated analysis of data is essential due to the volume produced. However, being familiar with the finer intricacies of peptide fragmentation processes, and experiencing the difficulties of manual data interpretation allow a researcher to be able to more critically evaluate key results, particularly because there are many known rules of peptide fragmentation that are not incorporated into search engine scoring. Since the most commonly used MS/MS activation method is collision-induced dissociation (CID), in this article we present a brief review of the history of peptide CID analysis. Next, we provide a detailed tutorial on how to determine peptide sequences from CID data. Although the focus of the tutorial is de novo sequencing, the lessons learned and resources supplied are useful for data interpretation in general. PMID:25667941

  7. De novo transcriptome assembly of a sour cherry cultivar, Schattenmorelle

    Yeonhwa Jo

    2015-12-01

    Full Text Available Sour cherry (Prunus cerasus in the genus Prunus in the family Rosaceae is one of the most popular stone fruit trees worldwide. Of known sour cherry cultivars, the Schattenmorelle is a famous old sour cherry with a high amount of fruit production. The Schattenmorelle was selected before 1650 and described in the 1800s. This cultivar was named after gardens of the Chateau de Moreille in which the cultivar was initially found. In order to identify new genes and to develop genetic markers for sour cherry, we performed a transcriptome analysis of a sour cherry. We selected the cultivar Schattenmorelle, which is among commercially important cultivars in Europe and North America. We obtained 2.05 GB raw data from the Schattenmorelle (NCBI accession number: SRX1187170. De novo transcriptome assembly using Trinity identified 61,053 transcripts in which N50 was 611 bp. Next, we identified 25,585 protein coding sequences using TransDecoder. The identified proteins were blasted against NCBI's non-redundant database for annotation. Based on blast search, we taxonomically classified the obtained sequences. As a result, we provide the transcriptome of sour cherry cultivar Schattenmorelle using next generation sequencing.

  8. Spaced Seed Data Structures for De Novo Assembly

    Inanç Birol

    2015-01-01

    Full Text Available De novo assembly of the genome of a species is essential in the absence of a reference genome sequence. Many scalable assembly algorithms use the de Bruijn graph (DBG paradigm to reconstruct genomes, where a table of subsequences of a certain length is derived from the reads, and their overlaps are analyzed to assemble sequences. Despite longer subsequences unlocking longer genomic features for assembly, associated increase in compute resources limits the practicability of DBG over other assembly archetypes already designed for longer reads. Here, we revisit the DBG paradigm to adapt it to the changing sequencing technology landscape and introduce three data structure designs for spaced seeds in the form of paired subsequences. These data structures address memory and run time constraints imposed by longer reads. We observe that when a fixed distance separates seed pairs, it provides increased sequence specificity with increased gap length. Further, we note that Bloom filters would be suitable to implicitly store spaced seeds and be tolerant to sequencing errors. Building on this concept, we describe a data structure for tracking the frequencies of observed spaced seeds. These data structure designs will have applications in genome, transcriptome and metagenome assemblies, and read error correction.

  9. De novo protein structure generation from incomplete chemical shift assignments

    Shen Yang [National Institutes of Health, Laboratory of Chemical Physics, National Institute of Diabetes and Digestive and Kidney Diseases (United States); Vernon, Robert; Baker, David [University of Washington, Department of Biochemistry and Howard Hughes Medical Institute (United States); Bax, Ad [National Institutes of Health, Laboratory of Chemical Physics, National Institute of Diabetes and Digestive and Kidney Diseases (United States)], E-mail: bax@nih.gov

    2009-02-15

    NMR chemical shifts provide important local structural information for proteins. Consistent structure generation from NMR chemical shift data has recently become feasible for proteins with sizes of up to 130 residues, and such structures are of a quality comparable to those obtained with the standard NMR protocol. This study investigates the influence of the completeness of chemical shift assignments on structures generated from chemical shifts. The Chemical-Shift-Rosetta (CS-Rosetta) protocol was used for de novo protein structure generation with various degrees of completeness of the chemical shift assignment, simulated by omission of entries in the experimental chemical shift data previously used for the initial demonstration of the CS-Rosetta approach. In addition, a new CS-Rosetta protocol is described that improves robustness of the method for proteins with missing or erroneous NMR chemical shift input data. This strategy, which uses traditional Rosetta for pre-filtering of the fragment selection process, is demonstrated for two paramagnetic proteins and also for two proteins with solid-state NMR chemical shift assignments.

  10. Massively parallel de novo protein design for targeted therapeutics

    Chevalier, Aaron

    2017-09-26

    De novo protein design holds promise for creating small stable proteins with shapes customized to bind therapeutic targets. We describe a massively parallel approach for designing, manufacturing and screening mini-protein binders, integrating large-scale computational design, oligonucleotide synthesis, yeast display screening and next-generation sequencing. We designed and tested 22,660 mini-proteins of 37-43 residues that target influenza haemagglutinin and botulinum neurotoxin B, along with 6,286 control sequences to probe contributions to folding and binding, and identified 2,618 high-affinity binders. Comparison of the binding and non-binding design sets, which are two orders of magnitude larger than any previously investigated, enabled the evaluation and improvement of the computational model. Biophysical characterization of a subset of the binder designs showed that they are extremely stable and, unlike antibodies, do not lose activity after exposure to high temperatures. The designs elicit little or no immune response and provide potent prophylactic and therapeutic protection against influenza, even after extensive repeated dosing.

  11. De novo transcriptome assembly of Sorghum bicolor variety Taejin

    Yeonhwa Jo

    2016-06-01

    Full Text Available Sorghum (Sorghum bicolor, also known as great millet, is one of the most popular cultivated grass species in the world. Sorghum is frequently consumed as food for humans and animals as well as used for ethanol production. In this study, we conducted de novo transcriptome assembly for sorghum variety Taejin by next-generation sequencing, obtaining 8.748 GB of raw data. The raw data in this study can be available in NCBI SRA database with accession number of SRX1715644. Using the Trinity program, we identified 222,161 transcripts from sorghum variety Taejin. We further predicted coding regions within the assembled transcripts by the TransDecoder program, resulting in a total of 148,531 proteins. We carried out BLASTP against the Swiss-Prot protein sequence database to annotate the functions of the identified proteins. To our knowledge, this is the first transcriptome data for a sorghum variety derived from Korea, and it can be usefully applied to the generation of genetic markers.

  12. Massively parallel de novo protein design for targeted therapeutics

    Chevalier, Aaron; Silva, Daniel-Adriano; Rocklin, Gabriel J.; Hicks, Derrick R.; Vergara, Renan; Murapa, Patience; Bernard, Steffen M.; Zhang, Lu; Lam, Kwok-Ho; Yao, Guorui; Bahl, Christopher D.; Miyashita, Shin-Ichiro; Goreshnik, Inna; Fuller, James T.; Koday, Merika T.; Jenkins, Cody M.; Colvin, Tom; Carter, Lauren; Bohn, Alan; Bryan, Cassie M.; Fernández-Velasco, D. Alejandro; Stewart, Lance; Dong, Min; Huang, Xuhui; Jin, Rongsheng; Wilson, Ian A.; Fuller, Deborah H.; Baker, David

    2018-01-01

    De novo protein design holds promise for creating small stable proteins with shapes customized to bind therapeutic targets. We describe a massively parallel approach for designing, manufacturing and screening mini-protein binders, integrating large-scale computational design, oligonucleotide synthesis, yeast display screening and next-generation sequencing. We designed and tested 22,660 mini-proteins of 37–43 residues that target influenza haemagglutinin and botulinum neurotoxin B, along with 6,286 control sequences to probe contributions to folding and binding, and identified 2,618 high-affinity binders. Comparison of the binding and non-binding design sets, which are two orders of magnitude larger than any previously investigated, enabled the evaluation and improvement of the computational model. Biophysical characterization of a subset of the binder designs showed that they are extremely stable and, unlike antibodies, do not lose activity after exposure to high temperatures. The designs elicit little or no immune response and provide potent prophylactic and therapeutic protection against influenza, even after extensive repeated dosing. PMID:28953867

  13. De novo malignancy is associated with renal transplant tourism.

    Tsai, Meng-Kun; Yang, Ching-Yao; Lee, Chih-Yuan; Yeh, Chi-Chuan; Hu, Rey-Heng; Lee, Po-Huang

    2011-04-01

    Despite the objections to transplant tourism raised by the transplant community, many patients continue travel to other countries to receive commercial transplants. To evaluate some long-term complications, we reviewed medical records of 215 Taiwanese patients (touring group) who received commercial cadaveric renal transplants in China and compared them with those of 321 transplant recipients receiving domestic cadaveric renal transplants (domestic group) over the same 20-year period. Ten years after transplant, the graft and patient survival rates of the touring group were 55 and 81.5%, respectively, compared with 60 and 89.3%, respectively, of the domestic group. The difference between the two groups was not statistically significant. The 10-year cumulative cancer incidence of the touring group (21.5%) was significantly higher than that of the domestic group (6.8%). Univariate and multivariate stepwise regression analyses (excluding time on immunosuppression, an uncontrollable factor) indicated that transplant tourism was associated with significantly higher cancer incidence. Older age at transplantation was associated with a significantly increased cancer risk; however, the risk of de novo malignancy significantly decreased with longer graft survival. Thus, renal transplant tourism may be associated with a higher risk of post-transplant malignancy, especially in patients of older age at transplantation. © 2011 International Society of Nephrology

  14. Programming peptidomimetic syntheses by translating genetic codes designed de novo.

    Forster, Anthony C; Tan, Zhongping; Nalam, Madhavi N L; Lin, Hening; Qu, Hui; Cornish, Virginia W; Blacklow, Stephen C

    2003-05-27

    Although the universal genetic code exhibits only minor variations in nature, Francis Crick proposed in 1955 that "the adaptor hypothesis allows one to construct, in theory, codes of bewildering variety." The existing code has been expanded to enable incorporation of a variety of unnatural amino acids at one or two nonadjacent sites within a protein by using nonsense or frameshift suppressor aminoacyl-tRNAs (aa-tRNAs) as adaptors. However, the suppressor strategy is inherently limited by compatibility with only a small subset of codons, by the ways such codons can be combined, and by variation in the efficiency of incorporation. Here, by preventing competing reactions with aa-tRNA synthetases, aa-tRNAs, and release factors during translation and by using nonsuppressor aa-tRNA substrates, we realize a potentially generalizable approach for template-encoded polymer synthesis that unmasks the substantially broader versatility of the core translation apparatus as a catalyst. We show that several adjacent, arbitrarily chosen sense codons can be completely reassigned to various unnatural amino acids according to de novo genetic codes by translating mRNAs into specific peptide analog polymers (peptidomimetics). Unnatural aa-tRNA substrates do not uniformly function as well as natural substrates, revealing important recognition elements for the translation apparatus. Genetic programming of peptidomimetic synthesis should facilitate mechanistic studies of translation and may ultimately enable the directed evolution of small molecules with desirable catalytic or pharmacological properties.

  15. Dominant de novo DSP mutations cause erythrokeratodermia-cardiomyopathy syndrome.

    Boyden, Lynn M; Kam, Chen Y; Hernández-Martín, Angela; Zhou, Jing; Craiglow, Brittany G; Sidbury, Robert; Mathes, Erin F; Maguiness, Sheilagh M; Crumrine, Debra A; Williams, Mary L; Hu, Ronghua; Lifton, Richard P; Elias, Peter M; Green, Kathleen J; Choate, Keith A

    2016-01-15

    Disorders of keratinization (DOK) show marked genotypic and phenotypic heterogeneity. In most cases, disease is primarily cutaneous, and further clinical evaluation is therefore rarely pursued. We have identified subjects with a novel DOK featuring erythrokeratodermia and initially-asymptomatic, progressive, potentially fatal cardiomyopathy, a finding not previously associated with erythrokeratodermia. We show that de novo missense mutations clustered tightly within a single spectrin repeat of DSP cause this novel cardio-cutaneous disorder, which we term erythrokeratodermia-cardiomyopathy (EKC) syndrome. We demonstrate that DSP mutations in our EKC syndrome subjects affect localization of desmosomal proteins and connexin 43 in the skin, and result in desmosome aggregation, widening of intercellular spaces, and lipid secretory defects. DSP encodes desmoplakin, a primary component of desmosomes, intercellular adhesion junctions most abundant in the epidermis and heart. Though mutations in DSP are known to cause other disorders, our cohort features the unique clinical finding of severe whole-body erythrokeratodermia, with distinct effects on localization of desmosomal proteins and connexin 43. These findings add a severe, previously undescribed syndrome featuring erythrokeratodermia and cardiomyopathy to the spectrum of disease caused by mutation in DSP, and identify a specific region of the protein critical to the pathobiology of EKC syndrome and to DSP function in the heart and skin. © The Author 2015. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

  16. De Novo Design of Bioactive Small Molecules by Artificial Intelligence.

    Merk, Daniel; Friedrich, Lukas; Grisoni, Francesca; Schneider, Gisbert

    2018-01-01

    Generative artificial intelligence offers a fresh view on molecular design. We present the first-time prospective application of a deep learning model for designing new druglike compounds with desired activities. For this purpose, we trained a recurrent neural network to capture the constitution of a large set of known bioactive compounds represented as SMILES strings. By transfer learning, this general model was fine-tuned on recognizing retinoid X and peroxisome proliferator-activated receptor agonists. We synthesized five top-ranking compounds designed by the generative model. Four of the compounds revealed nanomolar to low-micromolar receptor modulatory activity in cell-based assays. Apparently, the computational model intrinsically captured relevant chemical and biological knowledge without the need for explicit rules. The results of this study advocate generative artificial intelligence for prospective de novo molecular design, and demonstrate the potential of these methods for future medicinal chemistry. © 2018 The Authors. Published by Wiley-VCH Verlag GmbH & Co. KGaA.

  17. De novo Biosynthesis of "Non-Natural" Thaxtomin Phytotoxins.

    Winn, Michael; Francis, Daniel; Micklefield, Jason

    2018-03-30

    Thaxtomins are diketopiperazine phytotoxins produced by Streptomyces scabies and other actinobacterial plant pathogens that inhibit cellulose biosynthesis in plants. Due to their potent bioactivity and novel mode of action there has been considerable interest in developing thaxtomins as herbicides for crop protection. To address the need for more stable derivatives, we have developed a new approach for structural diversification of thaxtomins. Genes encoding the thaxtomin NRPS from S. scabies, along with genes encoding a promiscuous tryptophan synthase (TrpS) from Salmonella typhimurium, were assembled in a heterologous host Streptomyces albus. Upon feeding indole derivatives to the engineered S. albus strain, tryptophan intermediates with alternative substituents are biosynthesized and incorporated by the NRPS to deliver a series of thaxtomins with different functionalities in place of the nitro group. The approach described herein, demonstrates how genes from different pathways and different bacterial origins can be combined in a heterologous host to create a de novo biosynthetic pathway to "non-natural" product target compounds. © 2018 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

  18. De novo DNA methylation during monkey pre-implantation embryogenesis.

    Gao, Fei; Niu, Yuyu; Sun, Yi Eve; Lu, Hanlin; Chen, Yongchang; Li, Siguang; Kang, Yu; Luo, Yuping; Si, Chenyang; Yu, Juehua; Li, Chang; Sun, Nianqin; Si, Wei; Wang, Hong; Ji, Weizhi; Tan, Tao

    2017-04-01

    Critical epigenetic regulation of primate embryogenesis entails DNA methylome changes. Here we report genome-wide composition, patterning, and stage-specific dynamics of DNA methylation in pre-implantation rhesus monkey embryos as well as male and female gametes studied using an optimized tagmentation-based whole-genome bisulfite sequencing method. We show that upon fertilization, both paternal and maternal genomes undergo active DNA demethylation, and genome-wide de novo DNA methylation is also initiated in the same period. By the 8-cell stage, remethylation becomes more pronounced than demethylation, resulting in an increase in global DNA methylation. Promoters of genes associated with oxidative phosphorylation are preferentially remethylated at the 8-cell stage, suggesting that this mode of energy metabolism may not be favored. Unlike in rodents, X chromosome inactivation is not observed during monkey pre-implantation development. Our study provides the first comprehensive illustration of the 'wax and wane' phases of DNA methylation dynamics. Most importantly, our DNA methyltransferase loss-of-function analysis indicates that DNA methylation influences early monkey embryogenesis.

  19. A crise financeira global e depois: um novo capitalismo?

    Luiz Carlos Bresser-Pereira

    2010-03-01

    Full Text Available A crise financeira global de 2008 foi conseqüência do processo de financeirização, a criação maciça de riqueza financeira fictícia iniciada da década de 1980, e da hegemonia de uma ideologia reacionária, o neoliberalismo, baseada em mercados auto-regulados e eficientes. Dessa crise emergirá um novo capitalismo, embora sua natureza seja de difícil previsão. Não será financeirizado, mas serão retomadas as tendências presentes nos trinta anos dourados em direção ao capitalismo global e baseado no conhecimento, além da tendência de expansão da democracia, tornando-a mais social e participativa.The 2008 global financial crisis was a consequence of the processes of financialization, the massive creation of fictitious financial wealth which began in the 1980's, and of the hegemony of a reactionary ideology, neoliberalism, based on the belief of the self-regulating capacity and efficiency of markets. From this crisis a new capitalism will emerge, althought its chacarteristics are hard to foresee. It will not be financial, but the tendencies of the 30 "golden years" toward global and knowledge-based capitalism, and the tendency of expansion of democracy will be among them.

  20. Enzyme-like replication de novo in a microcontroller environment.

    Tangen, Uwe

    2010-01-01

    The desire to start evolution from scratch inside a computer memory is as old as computing. Here we demonstrate how viable computer programs can be established de novo in a Precambrian environment without supplying any specific instantiation, just starting with random bit sequences. These programs are not self-replicators, but act much more like catalysts. The microcontrollers used in the end are the result of a long series of simplifications. The objective of this simplification process was to produce universal machines with a human-readable interface, allowing software and/or hardware evolution to be studied. The power of the instruction set can be modified by introducing a secondary structure-folding mechanism, which is a state machine, allowing nontrivial replication to emerge with an instruction width of only a few bits. This state-machine approach not only attenuates the problems of brittleness and encoding functionality (too few bits available for coding, and too many instructions needed); it also enables the study of hardware evolution as such. Furthermore, the instruction set is sufficiently powerful to permit external signals to be processed. This information-theoretic approach forms one vertex of a triangle alongside artificial cell research and experimental research on the creation of life. Hopefully this work helps develop an understanding of how information—in a similar sense to the account of functional information described by Hazen et al.—is created by evolution and how this information interacts with or is embedded in its physico-chemical environment.

  1. Rapid centriole assembly in Naegleria reveals conserved roles for both de novo and mentored assembly.

    Fritz-Laylin, Lillian K; Levy, Yaron Y; Levitan, Edward; Chen, Sean; Cande, W Zacheus; Lai, Elaine Y; Fulton, Chandler

    2016-03-01

    Centrioles are eukaryotic organelles whose number and position are critical for cilia formation and mitosis. Many cell types assemble new centrioles next to existing ones ("templated" or mentored assembly). Under certain conditions, centrioles also form without pre-existing centrioles (de novo). The synchronous differentiation of Naegleria amoebae to flagellates represents a unique opportunity to study centriole assembly, as nearly 100% of the population transitions from having no centrioles to having two within minutes. Here, we find that Naegleria forms its first centriole de novo, immediately followed by mentored assembly of the second. We also find both de novo and mentored assembly distributed among all major eukaryote lineages. We therefore propose that both modes are ancestral and have been conserved because they serve complementary roles, with de novo assembly as the default when no pre-existing centriole is available, and mentored assembly allowing precise regulation of number, timing, and location of centriole assembly. © 2016 Wiley Periodicals, Inc.

  2. De Novo Human Cardiac Myocytes for Medical Research: Promises and Challenges

    Veronique Hamel

    2017-01-01

    Full Text Available The advent of cellular reprogramming technology has revolutionized biomedical research. De novo human cardiac myocytes can now be obtained from direct reprogramming of somatic cells (such as fibroblasts, from induced pluripotent stem cells (iPSCs, which are reprogrammed from somatic cells, and from human embryonic stem cells (hESCs. Such de novo human cardiac myocytes hold great promise for in vitro disease modeling and drug screening and in vivo cell therapy of heart disease. Here, we review the technique advancements for generating de novo human cardiac myocytes. We also discuss several challenges for the use of such cells in research and regenerative medicine, such as the immature phenotype and heterogeneity of de novo cardiac myocytes obtained with existing protocols. We focus on the recent advancements in addressing such challenges.

  3. Novel de novo BRCA2 mutation in a patient with a family history of breast cancer

    Hansen, Thomas V O; Bisgaard, Marie Luise; Jønson, Lars

    2008-01-01

    whole blood. The paternity was determined by single nucleotide polymorphism (SNP) microarray analysis. Parental origin of the de novo mutation was determined by establishing mutation-SNP haplotypes by variant specific PCR, while de novo and mosaic status was investigated by sequencing of DNA from......BACKGROUND: BRCA2 germ-line mutations predispose to breast and ovarian cancer. Mutations are widespread and unclassified splice variants are frequently encountered. We describe the parental origin and functional characterization of a novel de novo BRCA2 splice site mutation found in a patient...... and synthesis of a truncated BRCA2 protein. The aberrant splicing was verified by RT-PCR analysis on RNA isolated from whole blood of the affected patient. The mutation was not found in any of the patient's parents or in the mother's carcinoma, showing it is a de novo mutation. Variant specific PCR indicates...

  4. Spontaneous de novo vaginal adenosis resembling Bartholin’s ...

    Adebayo Alade Adewole

    Spontaneous de novo vaginal adenosis resembling Bartholin's cyst: A case report ... 6 by 5 cm. The cervix, uterus, adnexa and Pouch of Douglas (POD) were normal. .... of vaginal cancer.2–4 Although, DES exposed daughters have an.

  5. The NOVO Network: the original scientific basis for its establishment and our R&D vision

    Winkel, Jørgen; Edwards, Kasper; Dellve, L.; Schiller, B.; Westgaard, Rolf H.

    2017-01-01

    The NOVO network is a Nordic non-governmental professional association whose aims are to foster the scientific progress, knowledge and development of the working environment within Healthcare as an integrated part of production system development. The vision is a “Nordic Model for Sustainable Systems” in the healthcare sector. It was founded in 2006 in Copenhagen and was financially supported by the Nordic Council of Ministers from 2007 to 2015. The motivation to establish the NOVO Network ar...

  6. De novo nonsense mutations in ASXL1 cause Bohring-Opitz syndrome

    Hoischen, Alexander; van Bon, Bregje W M; Rodríguez-Santiago, Benjamín

    2011-01-01

    Bohring-Opitz syndrome is characterized by severe intellectual disability, distinctive facial features and multiple congenital malformations. We sequenced the exomes of three individuals with Bohring-Opitz syndrome and in each identified heterozygous de novo nonsense mutations in ASXL1, which...... is required for maintenance of both activation and silencing of Hox genes. In total, 7 out of 13 subjects with a Bohring-Opitz phenotype had de novo ASXL1 mutations, suggesting that the syndrome is genetically heterogeneous....

  7. Selecting Superior De Novo Transcriptome Assemblies: Lessons Learned by Leveraging the Best Plant Genome.

    Loren A Honaas

    Full Text Available Whereas de novo assemblies of RNA-Seq data are being published for a growing number of species across the tree of life, there are currently no broadly accepted methods for evaluating such assemblies. Here we present a detailed comparison of 99 transcriptome assemblies, generated with 6 de novo assemblers including CLC, Trinity, SOAP, Oases, ABySS and NextGENe. Controlled analyses of de novo assemblies for Arabidopsis thaliana and Oryza sativa transcriptomes provide new insights into the strengths and limitations of transcriptome assembly strategies. We find that the leading assemblers generate reassuringly accurate assemblies for the majority of transcripts. At the same time, we find a propensity for assemblers to fail to fully assemble highly expressed genes. Surprisingly, the instance of true chimeric assemblies is very low for all assemblers. Normalized libraries are reduced in highly abundant transcripts, but they also lack 1000s of low abundance transcripts. We conclude that the quality of de novo transcriptome assemblies is best assessed through consideration of a combination of metrics: 1 proportion of reads mapping to an assembly 2 recovery of conserved, widely expressed genes, 3 N50 length statistics, and 4 the total number of unigenes. We provide benchmark Illumina transcriptome data and introduce SCERNA, a broadly applicable modular protocol for de novo assembly improvement. Finally, our de novo assembly of the Arabidopsis leaf transcriptome revealed ~20 putative Arabidopsis genes lacking in the current annotation.

  8. De novo FBXO11 mutations are associated with intellectual disability and behavioural anomalies.

    Fritzen, Daniel; Kuechler, Alma; Grimmel, Mona; Becker, Jessica; Peters, Sophia; Sturm, Marc; Hundertmark, Hela; Schmidt, Axel; Kreiß, Martina; Strom, Tim M; Wieczorek, Dagmar; Haack, Tobias B; Beck-Wödl, Stefanie; Cremer, Kirsten; Engels, Hartmut

    2018-05-01

    Intellectual disability (ID) has an estimated prevalence of 1.5-2%. In most affected individuals, its genetic basis remains unclear. Whole exome sequencing (WES) studies have identified a multitude of novel causative gene defects and have shown that a large proportion of sporadic ID cases results from de novo mutations. Here, we present two unrelated individuals with similar clinical features and deleterious de novo variants in FBXO11 detected by WES. Individual 1, a 14-year-old boy, has mild ID as well as mild microcephaly, corrected cleft lip and alveolus, hyperkinetic disorder, mild brain atrophy and minor facial dysmorphism. WES detected a heterozygous de novo 1 bp insertion in the splice donor site of exon 3. Individual 2, a 3-year-old boy, showed ID and pre- and postnatal growth retardation, postnatal mild microcephaly, hyperkinetic and restless behaviour, as well as mild dysmorphism. WES detected a heterozygous de novo frameshift mutation. While ten individuals with ID and de novo variants in FBXO11 have been reported as part of larger studies, only one of the reports has some additional clinical data. Interestingly, the latter individual carries the identical mutation as our individual 2 and also displays ID, intrauterine growth retardation, microcephaly, behavioural anomalies, and dysmorphisms. Thus, we confirm deleterious de novo mutations in FBXO11 as a cause of ID and start the delineation of the associated clinical picture which may also comprise postnatal microcephaly or borderline small head size and behavioural anomalies.

  9. De novo giant A2 aneurysm following anterior communicating artery occlusion.

    Ibrahim, Tarik F; Hafez, Ahmad; Andrade-Barazarte, Hugo; Raj, Rahul; Niemela, Mika; Lehto, Hanna; Numminen, Jussi; Jarvelainen, Juha; Hernesniemi, Juha

    2015-01-01

    De novo intracranial aneurysms are reported to occur with varying incidence after intracranial aneurysm treatment. They are purported to be observed, however, with increased incidence after Hunterian ligation; particularly in cases of carotid artery occlusion for giant or complex aneurysms deemed unclippable. We report a case of right-sided de novo giant A2 aneurysm 6 years after an anterior communicating artery (ACoA) aneurysm clipping. We believe this de novo aneurysm developed in part due to patient-specific risk factors but also a significant change in cerebral hemodynamics. The ACoA became occluded after surgery that likely altered the cerebral hemodynamics and contributed to the de novo aneurysm. We believe this to be the first reported case of a giant de novo aneurysm in this location. Following parent vessel occlusion (mostly of the carotid artery), there are no reports of any de novo aneurysms in the pericallosal arteries let alone a giant one. The patient had a dominant right A1 and the sudden increase in A2 blood flow likely resulted in increased wall shear stress, particularly in the medial wall of the A2 where the aneurysm occurred 2 mm distal to the A1-2 junction. ACoA preservation is a key element of aneurysm surgery in this location. Suspected occlusion of this vessel may warrant closer radiographic follow-up in patients with other risk factors for aneurysm development.

  10. De novo ORFs in Drosophila are important to organismal fitness and evolved rapidly from previously non-coding sequences.

    Josephine A Reinhardt

    Full Text Available How non-coding DNA gives rise to new protein-coding genes (de novo genes is not well understood. Recent work has revealed the origins and functions of a few de novo genes, but common principles governing the evolution or biological roles of these genes are unknown. To better define these principles, we performed a parallel analysis of the evolution and function of six putatively protein-coding de novo genes described in Drosophila melanogaster. Reconstruction of the transcriptional history of de novo genes shows that two de novo genes emerged from novel long non-coding RNAs that arose at least 5 MY prior to evolution of an open reading frame. In contrast, four other de novo genes evolved a translated open reading frame and transcription within the same evolutionary interval suggesting that nascent open reading frames (proto-ORFs, while not required, can contribute to the emergence of a new de novo gene. However, none of the genes arose from proto-ORFs that existed long before expression evolved. Sequence and structural evolution of de novo genes was rapid compared to nearby genes and the structural complexity of de novo genes steadily increases over evolutionary time. Despite the fact that these genes are transcribed at a higher level in males than females, and are most strongly expressed in testes, RNAi experiments show that most of these genes are essential in both sexes during metamorphosis. This lethality suggests that protein coding de novo genes in Drosophila quickly become functionally important.

  11. Los cariotipos de Cologania grandiflora y Erythrina americana (Leguminosae- Papilionoideae-Phaseoleae de la Reserva Ecológica del Pedregal de San Ángel, México Karyotypes of Cologania grandiflora and Erythrina americana (Leguminosae-Papilionoideae- Phaseoleae of Reserva Ecológica del Pedregal de San Ángel, Mexico

    Fernando Tapia-Pastrana

    2011-09-01

    Full Text Available Se analizaron citogenéticamente células provenientes de meristemos radiculares de 2 leguminosas, Cologania grandiflora y Erythrina americana, que en la actualidad están incluidas en la flora de la Reserva Ecológica del Pedregal de San Ángel, México, D. F., mediante una técnica de extendido en superficie y secado al aire para determinar los números cromosómicos somáticos. Por vez primera se obtuvieron la morfología cromosómica y otras características cuantitativas de los cariotipos en C. grandiflora (2n= 44= 26m +18sm y en E. americana (2n= 42= 36m + 4sm +2st sat, primeras también en ambos géneros. Cologania y Erythrina se reconocen como poliploides estabilizados y el hallazgo de un único par de cromosomas con satélites (dominancia nucleolar en las especies estudiadas aquí, favorece la opinión de un origen alopoliploide para estos taxa.Meristematic root cells from Cologania grandiflora and Erythrina americana from Reserva Ecológica del Pedregal de San Ángel, Distrito Federal, Mexico, were analyzed cytogenenetically using a surface-spreading and air-drying method. The somatic chromosome numbers were determined. Chromosome morphology and others quantitative features of the karyotypes obtained for first time in C. grandiflora (2n= 44= 26m + 18sm and E. americana (2n= 42= 36m + 4sm + 2st sat and also the first in both genera. Cologania and Erythrina are recognized as stabilized polyploids and the finding of just one pair of chromosomes with satellites (nucleolar dominance in the species analyzed here supports the view of allopolyploid origin of these taxa.

  12. Radioisotope devices at Novo-Krivorozhskij-ore-enrichment plant

    Levitskij, V.Ya.; Kucher, V.G.; Ministerstvo Chernoj Metallurgii Ukrainskoj SSR, Dnepropetrovsk, Bazovaya Opytno-Konstruktorskaya Izotopnaya lab.)

    1975-01-01

    Use of the ''Ferrite'' analyzers, AZhR and PAZh-1 and the GR-7 gamma relay in different engineering areas of the Novo-Krivorozh ore-enrichment plant is evaluated. The ''Ferrite'' radioisotopic analyzer was designed for rapid roentgeno-radiometric determination of the total iron and iron group element contents in powdered samples of ores and products of their treatment. From the density of the flux of the characteristic radiation it is possible to determine quantitatively the content of the element of interest in the analyzed material. The radioisotpic analyzer AZhR-1 is distinguished by its high efficiency in the analysis for total iron on products of processing of iron ore raw materials. The use of this apparatus allows complete replacement of the chemical method for rapid analysis of concentrates by the roentgeno-radiometric method, which decreases the total analytical work on determination of total iron and speeds up output of information on concentrate quality. The radioisotopic gamma analyzer PAZh-1 is designed for automatic and either continuous or discrete measurement of the total iron content in iron ore materials ground to 50 mm, carried on a conveyor, without selection or preparation of the samples for analysis. The analyzer operates on the principle of measuring the average frequency of impingement on a detector of gamma quanta back-scattered by the analyzed material. This frequency is determined by the percentage content of total iron in the material. The apparatus operates continuously. The mean square deviation of the apparatus values from chemical data is 0.93% Fesub(total). Use of the apparatus greatly increases the operativeness of the control and decreases the laboriousness of raw material sampling in an engineering stream. The radioisotopic data units GR-7 are designed for control of the level of materials in hoppers for recovery and burning of agglomerates. Use of this apparatus showed its great advantage over data units of other types

  13. Internet e Cultura: um novo olhar, veloz e voraz

    Wilson de Oliveira Souza

    1999-01-01

    Full Text Available Em cada piscadela que damos, um novo mundo enxergamos. Com a globalização, o modo de ver o mundo muda radicalmente, principalmente devido ao complexo ritmo ditado pelas relações entre o meio ambiente e seus usuários. De forma sintetizada, podemos explicar que a globalização é resultado da terceira revolução tecnológica (tecnologias ligadas à busca, processamento, difusão e transmissão de informações; inteligência artificial; engenharia genética, da formação de áreas de livre comércio e blocos econômicos interligados (como o Mercosul, a União Européia e o Nafta e da crescente interligação e interdependência dos mercados físicos e financeiros em escala planetária. Essa trinca é responsável pela alteração, principalmente, da nova forma de enxergarmos a cultura, aceitando que a mundialização da cultura é um processo em curso, não concluído ainda, na qual as formas culturais nacionais ou locais entram em contato rapidamente. Com isso, quedam as barreiras territoriais, forçam as mediações e criam, no dizer de Featherstone, a "terceira cultura", entendendo como "um conjunto de práticas, conhecimentos, convenções e estilos de vida que se desenvolvem de modo a se tornar cada vez mais independente dos Estados-Nação".

  14. Phenolic Amides Are Potent Inhibitors of De Novo Nucleotide Biosynthesis.

    Pisithkul, Tippapha; Jacobson, Tyler B; O'Brien, Thomas J; Stevenson, David M; Amador-Noguez, Daniel

    2015-09-01

    An outstanding challenge toward efficient production of biofuels and value-added chemicals from plant biomass is the impact that lignocellulose-derived inhibitors have on microbial fermentations. Elucidating the mechanisms that underlie their toxicity is critical for developing strategies to overcome them. Here, using Escherichia coli as a model system, we investigated the metabolic effects and toxicity mechanisms of feruloyl amide and coumaroyl amide, the predominant phenolic compounds in ammonia-pretreated biomass hydrolysates. Using metabolomics, isotope tracers, and biochemical assays, we showed that these two phenolic amides act as potent and fast-acting inhibitors of purine and pyrimidine biosynthetic pathways. Feruloyl or coumaroyl amide exposure leads to (i) a rapid buildup of 5-phosphoribosyl-1-pyrophosphate (PRPP), a key precursor in nucleotide biosynthesis, (ii) a rapid decrease in the levels of pyrimidine biosynthetic intermediates, and (iii) a long-term generalized decrease in nucleotide and deoxynucleotide levels. Tracer experiments using (13)C-labeled sugars and [(15)N]ammonia demonstrated that carbon and nitrogen fluxes into nucleotides and deoxynucleotides are inhibited by these phenolic amides. We found that these effects are mediated via direct inhibition of glutamine amidotransferases that participate in nucleotide biosynthetic pathways. In particular, feruloyl amide is a competitive inhibitor of glutamine PRPP amidotransferase (PurF), which catalyzes the first committed step in de novo purine biosynthesis. Finally, external nucleoside supplementation prevents phenolic amide-mediated growth inhibition by allowing nucleotide biosynthesis via salvage pathways. The results presented here will help in the development of strategies to overcome toxicity of phenolic compounds and facilitate engineering of more efficient microbial producers of biofuels and chemicals. Copyright © 2015, Pisithkul et al.

  15. Potencial forrageiro de novos clones de capim-elefante

    Botrel Milton de Andrade

    2000-01-01

    Full Text Available O objetivo deste trabalho foi avaliar o comportamento de novos clones selecionados de capim-elefante. O experimento foi realizado na Embrapa Gado de Leite, em Coronel Pacheco -- MG, por um período de dois anos. Foi avaliado o potencial forrageiro de 20 clones de capim-elefante, obtidos pelo programa de melhoramento, e mais duas cultivares tradicionais (Cameroon e Taiwan A-146 usadas como testemunhas. O delineamento experimental foi o de blocos ao acaso com quatro repetições. As adubações para estabelecimento e manutenção foram realizadas de acordo com a análise do solo, visando suprir as exigências nutricionais do capim-elefante. Observaram-se diferenças significativas entre os clones, quanto ao potencial para produção de forragem, à relação folha/colmo e ao perfilhamento aéreo e basal. A maioria dos clones avaliados apresentou maior produção de matéria seca que as cultivares tradicionais, Cameroon e Taiwan A-146, durante o período seco e chuvoso. Não houve diferença significativa no teor de proteína bruta da matéria seca das cultivares controles (Cameroon e Taiwan A-146 e dos clones avaliados, em ambas as estações (águas e seca. O clone F 27-01, lançado pela Embrapa Gado de Leite com o nome de cultivar Pioneiro, destacou-se para quase todas as características agronômicas estudadas.

  16. Phenolic Amides Are Potent Inhibitors of De Novo Nucleotide Biosynthesis

    Pisithkul, Tippapha; Jacobson, Tyler B.; O'Brien, Thomas J.; Stevenson, David M.

    2015-01-01

    An outstanding challenge toward efficient production of biofuels and value-added chemicals from plant biomass is the impact that lignocellulose-derived inhibitors have on microbial fermentations. Elucidating the mechanisms that underlie their toxicity is critical for developing strategies to overcome them. Here, using Escherichia coli as a model system, we investigated the metabolic effects and toxicity mechanisms of feruloyl amide and coumaroyl amide, the predominant phenolic compounds in ammonia-pretreated biomass hydrolysates. Using metabolomics, isotope tracers, and biochemical assays, we showed that these two phenolic amides act as potent and fast-acting inhibitors of purine and pyrimidine biosynthetic pathways. Feruloyl or coumaroyl amide exposure leads to (i) a rapid buildup of 5-phosphoribosyl-1-pyrophosphate (PRPP), a key precursor in nucleotide biosynthesis, (ii) a rapid decrease in the levels of pyrimidine biosynthetic intermediates, and (iii) a long-term generalized decrease in nucleotide and deoxynucleotide levels. Tracer experiments using 13C-labeled sugars and [15N]ammonia demonstrated that carbon and nitrogen fluxes into nucleotides and deoxynucleotides are inhibited by these phenolic amides. We found that these effects are mediated via direct inhibition of glutamine amidotransferases that participate in nucleotide biosynthetic pathways. In particular, feruloyl amide is a competitive inhibitor of glutamine PRPP amidotransferase (PurF), which catalyzes the first committed step in de novo purine biosynthesis. Finally, external nucleoside supplementation prevents phenolic amide-mediated growth inhibition by allowing nucleotide biosynthesis via salvage pathways. The results presented here will help in the development of strategies to overcome toxicity of phenolic compounds and facilitate engineering of more efficient microbial producers of biofuels and chemicals. PMID:26070680

  17. Estabelecimento de leguminosas arbóreas em pastos de capim-marandu e tanzânia Establishment of leguminous trees in marandu and tanzânia pastures

    Paulo Francisco Dias

    2008-10-01

    Full Text Available O objetivo deste trabalho foi avaliar o desempenho de mudas sem proteção (de cercas ou estacas de quatro espécies de leguminosas arbóreas e uma mistura eqüitativa dessas espécies, introduzidas em pastagens de Brachiaria brizantha cv. Marandu e Panicum maximum cv. Tanzânia, na presença de gado. O delineamento experimental foi o inteiramente ao acaso, em esquema fatorial 2x5, duas gramíneas (marandu e tanzânia e quatro espécies de leguminosas (Mimosa artemisiana, Pseudosamanea guachapele, Enterolobium contortisiliquum, Acacia farnesiana e uma mistura dessas espécies, com três repetições. Avaliaram-se: altura da muda, diâmetro do caule, diâmetro da copa, sobrevivência da muda, freqüência de pastejo e ocorrência de formigas. As diferenças estatísticas entre as médias da variável canônica principal, pelo teste de Scott-Knott, indicaram a formação de três agrupamentos, tendo-se destacado o grupo formado pelos tratamentos M. artemisiana e mistura de leguminosas, nos dois pastos, mais E. contortisiliquum e A. farnesiana, nos pastos dos capins marandu e tanzânia, respectivamente. Diferenças entre as médias dos tratamentos relativas a cada variável, calculadas por meio de intervalos de confiança de Bonferroni, mostraram que mudas de M. artemisiana apresentaram maior altura e sobrevivência em pasto de capim-marandu. Mudas dessa leguminosa, sem proteção, são indicadas para ser introduzidas, nas pastagens de capim-marandu da região, na presença do gado.The objective of this work was to evaluate the performance of nonprotected (by fences or pickets seedlings of leguminous tree species and an equitable mix of these species, introduced in pastures of Brachiaria brizantha cv. Marandu and Panicum maximum cv. Tanzânia, in the presence of cattle. The experimental design was a completely randomized one, in a 2x5 factorial arrangement, with two grasses (marandu and tanzânia and four leguminous species (Mimosa artemisiana

  18. Aislamiento y caracterización de cepas de rizobios aisladas de diferentes leguminosas en la región de Cascajal, Villa Clara Isolation and characterization of rhizobia strains isolated from different legumes in the Cascajal region, Villa Clara

    Pérez Guianeya

    2008-06-01

    Full Text Available Se aislaron 19 cepas de rizobio a partir de los nódulos de las leguminosas Canavalia ensiformis, Stylosanthes guianensis, Centrosema molle, Pueraria phaseoloides y Macroptilium atropurpureum, con el objetivo de obtener inoculantes efectivos para dichos cultivos en suelos ácidos. Para la caracterización de los aislados bacterianos se estudiaron sus características micromorfológicas, tintoriales y culturales, así como algunas respuestas fisiológico-bioquímicas, tales como la excreción de ácido o base al medio de cultivo y el ensayo de la cetolactasa. Se hizo un ensayo de nodulación in vitro con cada una de las leguminosas para determinar la efectividad de los aislados. De acuerdo con las características culturales, la tasa de crecimiento en medio LMA y la producción de ácido o base, los aislados obtenidos pudieran pertenecer a los géneros Bradyrhizobium y Rhizobium y/o Sinorhizobium. La prueba de la cetolactasa permitió conocer que ninguno de los aislados en estudio pertenece al género Agrobacterium. El ensayo con plantas inoculadas mostró que todas las cepas aisladas fueron efectivas en la nodulación, ya que nodularon en las leguminosas probadas. Se concluye que de las cepas aisladas 11 pudieran pertenecer al género Bradyrhizobium, mientras que las ocho restantes comparten características similares con los géneros Rhizobium y/o Sinorhizobium; todos los aislados fueron efectivos en la nodulación y pueden considerarse cepas promisorias para la obtención de inoculantes para las leguminosas forrajeras en estudio.Nineteen rhizobium strains were isolated from the nodules of the legumes Canavalia ensiformis, Stylosanthes guianensis, Centrosema molle, Pueraria phaseoloides and Macroptilium atropurpureum, with the objective of obtaining effective inoculants for such crops in acid soils. For the characterization of the bacterial isolates, their micromorphological, staining and cultural characteristics were studied, as well as some

  19. Forage intake and botanical composition of feed for cattle fed Brachiaria/legume mixtures Consumo e composição da forragem ingerida por bovinos alimentados com Brachiaria e uma leguminosa

    Robert Macedo

    2010-08-01

    Full Text Available A key contribution to study the cycling of nutrients in soil/plant/animal systems is the evaluation of the consumption of forage and their nutrients by cattle. The objective of this study was to test techniques to evaluate faecal production, in vitro digestibility, forage consumption and the proportion of legume in the acquired diet. Five Zebu steer calves were confined and fed five diets of different combinations of Brachiaria dictyoneura and Desmodium ovalifolium. All quantities of faeces were collected per animal and these values were found to compare favourably with those derived from using the chromium oxide technique. In vitro digestibility ranged from 7 to 10% higher than the actual in vivo digestibility. Faecal samples from steers fed with diets with 25% or more of grass in the mixture were found to be depleted in δ13C between 1.7 and 2.1‰, but no depletion was observed when the diet was 100% D. ovalifolium. There was a positive linear regression (r² = 0.97*** of the δ13C of the diet with the δ13C of faeces, but if the acquired diet contained a very high proportion of legume, the legume content could be underestimated by as much as 10%. None of the internal indicators, such as lignin or ash content of the diets, were useful to predict feed intake, but the chromium oxide external indicator performed satisfactorily. The 13C analysis of the faeces was an effective predictor of the proportion of the legume in the consumed diet.Uma contribuição fundamental para o estudo da ciclagem de nutrientes no sistema solo/planta/ animal é a avaliação do consumo pelo gado de forragem e dos nutrientes nela contidos. Testaram-se, sob condições controladas, técnicas para avaliar a produção fecal, digestibilidade in vitro, consumo de forragem e a proporção de leguminosa ingerida na dieta. Cinco novilhos de Zebu foram confinados e alimentados com quantidades conhecidas de cinco rações com diferentes proporções de Brachiaria dictyoneura e

  20. Organic matter quality in a soil cultivated with perennial herbaceous legumes Qualidade da matéria orgânica de um solo cultivado com leguminosas herbáceas perenes

    Luciano Pasqualoto Canellas

    2004-02-01

    Full Text Available Using herbaceous legumes in agricultural systems yields great quantities of plant residues, allowing changes in soil organic matter quality and content over the years. This study was conducted on an Ultisol, at Seropédica, RJ, Brazil, to evaluate the effects of different perennial herbaceous legumes on soil organic matter quality. A factorial scheme with three replications was used to evaluate the species: forage groundnut cv. BR-14951 (Arachis pintoi, tropical kudzu (Pueraria phaseoloides, and siratro (Macroptilium atropurpureum. After the first cut, each plot was divided into two subplots; plants were cut and left on the soil surface or cut and removed. Soil samples of a closed area covered by spontaneous vegetation (mainly C3 plants or by Panicum maximum were also analysed. Samples were collected from two layers (0-5 and 5-10 cm, processed for the fractionation of organic matter and the evaluation of structural characteristics of humic acids (HA. Evaluated legumes did not change total organic carbon contents, but promoted HA accumulation in the superficial soil layer. Humic acids may be used as indicators of the management effects on soil organic fractions, because there was significant incorporation of carbon and nitrogen derived from the legume residues, even for the short experimentation time (28 months. Residue management did not modify quantitative aspects of the distribution of the humified organic matter, but promoted, however, a higher condensation degree of humic acids evaluated by the elementary composition, IR and fluorescence spectroscopy.O uso de leguminosas herbáceas em sistemas agrícolas permite o aporte de quantidades expressivas de fitomassa, possibilitando alterações no teor e na qualidade da matéria orgânica do solo ao longo dos anos. Este trabalho avalia a qualidade da matéria orgânica de um Argissolo Vermelho Amarelo localizado em Seropédica, RJ, e cultivado com diferentes espécies de leguminosas herb

  1. ''de novo'' aneurysms following endovascular procedures

    Briganti, F.; Cirillo, S.; Caranci, F. [Department of Neurological Sciences, Services of Neuroradiology, ' ' Federico II' ' University, Naples (Italy); Esposito, F.; Maiuri, F. [Department of Neurological Sciences, Services of Neurosurgery, ' ' Federico II' ' University, Naples (Italy)

    2002-07-01

    Two personal cases of ''de novo'' aneurysms of the anterior communicating artery (ACoA) occurring 9 and 4 years, respectively, after endovascular carotid occlusion are described. A review of the 30 reported cases (including our own two) of ''de novo'' aneurysms after occlusion of the major cerebral vessels has shown some features, including a rather long time interval after the endovascular procedure of up to 20-25 years (average 9.6 years), a preferential ACoA (36.3%) and internal carotid artery-posterior communicating artery (ICA-PCoA) (33.3%) location of the ''de novo'' aneurysms, and a 10% rate of multiple aneurysms. These data are compared with those of the group of reported spontaneous ''de novo'' aneurysms after SAH or previous aneurysm clipping. We agree that the frequency of ''de novo'' aneurysms after major-vessel occlusion (two among ten procedures in our series, or 20%) is higher than commonly reported (0 to 11%). For this reason, we suggest that patients who have been submitted to endovascular major-vessel occlusion be followed up for up to 20-25 years after the procedure, using non-invasive imaging studies such as MR angiography and high-resolution CT angiography. On the other hand, periodic digital angiography has a questionable risk-benefit ratio; it may be used when a ''de novo'' aneurysm is detected or suspected on non-invasive studies. The progressive enlargement of the ACoA after carotid occlusion, as described in our case 1, must be considered a radiological finding of risk for ''de novo'' aneurysm formation. (orig.)

  2. Produtividade e valor nutritivo de pastos consorciados com diferentes espécies de leguminosas Productivity and nutritive value of mixed pastures with different legume species

    Clair Jorge Olivo

    2012-11-01

    Full Text Available O objetivo desta pesquisa foi avaliar a produtividade e o valor nutritivo de dois sistemas forrageiros (SF constituídos por capim elefante (CE, azevém (AZ, trevo branco (TB e espécies de crescimento espontâneo (ECE, como SF1; e CE + AZ + amendoim forrageiro (AF + ECE, como SF2. O CE foi estabelecido em linhas espaçadas a cada quatro metros. Entre elas, foi estabelecido azevém, durante o período hibernal, permitindo-se o desenvolvimento de ECE no período estival. Para avaliação, foram utilizadas vacas da raça Holandesa e o método de pastejo foi o rotacionado. Avaliaram-se a massa de forragem inicial (MFI e a composição botânica e estrutural dos pastos. Para as estimativas de valor nutritivo, foram feitas amostragens simulando o pastejo e analisados a fibra em detergente neutro (FDN, fibra em detergente ácido (FDA, proteína bruta (PB, digestibilidade in vitro da matéria seca (DIVMS e digestibilidade in vitro da matéria orgânica (DIVMO. O delineamento experimental foi o inteiramente casualizado com dois tratamentos e duas repetições, em parcelas subdivididas no tempo. Os valores médios de massa de forragem inicial e da carga animal foram similares entre os SF. Observou-se resultado superior para o teor médio de PB da forragem do SF2. O uso do azevém, das leguminosas e das espécies de crescimento espontâneo em consórcio com o CE permite manter massa de forragem uniforme no decorrer dos pastejos.The objective of this research was to evaluate the productivity and nutritive value of two pasture-based systems (PS with elephant grass (EG + ryegrass (RG + white clover (WC + spontaneous growing species (SGS, for PS1; and EG + RG + forage peanut (FP + SGS, for PS2. EG was established in rows spaced by four meters. Ryegrass was seeding in the space between rows during cool-season and development of SGS was permitted in the warm-season. Holstein cows under rotational grazing were used in the evaluation. The initial forage mass (IFM

  3. Coccidioidomicose: novo caso brasileiro Coccidiodomycosis: a new Brazilian case

    Mário A.P. Moraes

    1998-12-01

    Full Text Available É descrito um caso de coccidioidomicose pulmonar oriundo da zona rural de Bertolínia, PI. A manifestação clínica principal consistiu em dor torácica e o diagnóstico teve por base o achado do agente3/4Coccidioides immitis3/4em cortes histológicos. Formas teciduais do microrganismo3/4esférulas imaturas e maduras3/4estavam presentes nas lesões observadas em fragmento pulmonar removido do paciente por biópsia a céu aberto. Este novo caso autóctone da doença, como os outros anteriormente descritos no Brasil, procedia do interior semi-árido da Região Nordeste. O ambiente quente e seco do sertão nordestino oferece, sem dúvida, condições propícias ao desenvolvimento de C. immitis, um habitante do solo. As pessoas e animais do local devem adquirir a infecção ao revolver a terra, ato que os expõe à poeira contendo os propágulos do fungo.A case of pulmonary coccidioidomycosis from the rural zone of Bertolinia, PI, is reported. The patient, a farm worker, attributed his illness to the dust inhaled while digging a water well during the dry season of the year, some weeks before the onset of the clinical manifestations. The main symptoms of the disease were severe chest pain and moderate fever. The diagnosis was made histopathologically: tissue phase fungal organisms3/4immature spherules and spherules with endospores3/4were observed in histological sections of a lung fragment obtained by open chest biopsy. This is the twelfth autochthonous case of coccidioidomycosis found so far in Brazil. All of them involved native inhabitants of the semi-arid part of Northeastern Brazil. The hot and dry environment of the region seems to favor the development of C. immitis in the soil. Humans and animals probably acquire the infection by digging the soil, when they become exposed to the conidium-bearing dust raised by this activity.

  4. High frequencies of de novo CNVs in bipolar disorder and schizophrenia.

    Malhotra, Dheeraj

    2011-12-22

    While it is known that rare copy-number variants (CNVs) contribute to risk for some neuropsychiatric disorders, the role of CNVs in bipolar disorder is unclear. Here, we reasoned that a contribution of CNVs to mood disorders might be most evident for de novo mutations. We performed a genome-wide analysis of de novo CNVs in a cohort of 788 trios. Diagnoses of offspring included bipolar disorder (n = 185), schizophrenia (n = 177), and healthy controls (n = 426). Frequencies of de novo CNVs were significantly higher in bipolar disorder as compared with controls (OR = 4.8 [1.4,16.0], p = 0.009). De novo CNVs were particularly enriched among cases with an age at onset younger than 18 (OR = 6.3 [1.7,22.6], p = 0.006). We also confirmed a significant enrichment of de novo CNVs in schizophrenia (OR = 5.0 [1.5,16.8], p = 0.007). Our results suggest that rare spontaneous mutations are an important contributor to risk for bipolar disorder and other major neuropsychiatric diseases.

  5. Phylogenetics of neotropical Platymiscium (Leguminosae

    Saslis-Lagoudakis, C. Haris; Chase, Mark W; Robinson, Daniel N

    2008-01-01

    Platymiscium is a neotropical legume genus of forest trees in the Pterocarpus clade of the pantropical "dalbergioid" clade. It comprises 19 species (29 taxa), distributed from Mexico to southern Brazil. This study presents a molecular phylogenetic analysis of Platymiscium and allies inferred from...

  6. De Novo Discovery of Structured ncRNA Motifs in Genomic Sequences

    Ruzzo, Walter L; Gorodkin, Jan

    2014-01-01

    De novo discovery of "motifs" capturing the commonalities among related noncoding ncRNA structured RNAs is among the most difficult problems in computational biology. This chapter outlines the challenges presented by this problem, together with some approaches towards solving them, with an emphas...... on an approach based on the CMfinder CMfinder program as a case study. Applications to genomic screens for novel de novo structured ncRNA ncRNA s, including structured RNA elements in untranslated portions of protein-coding genes, are presented.......De novo discovery of "motifs" capturing the commonalities among related noncoding ncRNA structured RNAs is among the most difficult problems in computational biology. This chapter outlines the challenges presented by this problem, together with some approaches towards solving them, with an emphasis...

  7. Defining the maize transcriptome de novo using deep RNA-Seq

    Martin, Jeffrey; Gross, Stephen; Choi, Cindy; Zhang, Tao; Lindquist, Erika; Wei, Chia-Lin; Wang, Zhong

    2011-06-01

    De novo assembly of the transcriptome is crucial for functional genomics studies in bioenergy research, since many of the organisms lack high quality reference genomes. In a previous study we successfully de novo assembled simple eukaryote transcriptomes exclusively from short Illumina RNA-Seq reads [1]. However, extensive alternative splicing, present in most of the higher eukaryotes, poses a significant challenge for current short read assembly processes. Furthermore, the size of next-generation datasets, often large for plant genomes, presents an informatics challenge. To tackle these challenges we present a combined experimental and informatics strategy for de novo assembly in higher eukaryotes. Using maize as a test case, preliminary results suggest our approach can resolve transcript variants and improve gene annotations.

  8. Defining the maize transcriptome de novo using deep RNA-Seq

    Martin, Jeffrey; Gross, Stephen; Choi, Cindy; Zhang, Tao; Lindquist, Erika; Wei, Chia-Lin; Wang, Zhong

    2011-06-02

    De novo assembly of the transcriptome is crucial for functional genomics studies in bioenergy research, since many of the organisms lack high quality reference genomes. In a previous study we successfully de novo assembled simple eukaryote transcriptomes exclusively from short Illumina RNA-Seq reads [1]. However, extensive alternative splicing, present in most of the higher eukaryotes, poses a significant challenge for current short read assembly processes. Furthermore, the size of next-generation datasets, often large for plant genomes, presents an informatics challenge. To tackle these challenges we present a combined experimental and informatics strategy for de novo assembly in higher eukaryotes. Using maize as a test case, preliminary results suggest our approach can resolve transcript variants and improve gene annotations.

  9. Sequencing and de novo assembly of 150 genomes from Denmark as a population reference

    Maretty, Lasse; Jensen, Jacob Malte; Petersen, Bent

    2017-01-01

    Hundreds of thousands of human genomes are now being sequenced to characterize genetic variation and use this information to augment association mapping studies of complex disorders and other phenotypic traits. Genetic variation is identified mainly by mapping short reads to the reference genome......-coverage sequencing with mate-pair libraries extending up to 20 kilobases. We report de novo assemblies of 150 individuals (50 trios) from the GenomeDenmark project. The quality of these assemblies is similar to those obtained using the more expensive long-read technology. We use the assemblies to identify a rich set...... or by performing local assembly. However, these approaches are biased against discovery of structural variants and variation in the more complex parts of the genome. Hence, large-scale de novo assembly is needed. Here we show that it is possible to construct excellent de novo assemblies from high...

  10. Sequencing and de novo assembly of 150 genomes from Denmark as a population reference

    Maretty, Lasse; Jensen, Jacob Malte; Petersen, Bent

    2017-01-01

    Hundreds of thousands of human genomes are now being sequenced to characterize genetic variation and use this information to augment association mapping studies of complex disorders and other phenotypic traits. Genetic variation is identified mainly by mapping short reads to the reference genome...... or by performing local assembly. However, these approaches are biased against discovery of structural variants and variation in the more complex parts of the genome. Hence, large-scale de novo assembly is needed. Here we show that it is possible to construct excellent de novo assemblies from high......-coverage sequencing with mate-pair libraries extending up to 20 kilobases. We report de novo assemblies of 150 individuals (50 trios) from the GenomeDenmark project. The quality of these assemblies is similar to those obtained using the more expensive long-read technology. We use the assemblies to identify a rich set...

  11. De novo synthesis of purine nucleotides in different fiber types of rat skeletal muscle

    Tullson, P.C.; John-Alder, H.; Hood, D.A.; Terjung, R.L.

    1986-01-01

    The contribution of de novo purine nucleotide synthesis to nucleotide metabolism in skeletal muscles is not known. The authors have determined rates of de novo synthesis in soleus (slow-twitch red), red gastrocnemius (fast-twitch red), and white gastrocnemius (fast-twitch white) using the perfused rat hindquarter. 14 C glycine incorporation into ATP was linear after 1 and 2 hours of perfusion with 0.2 mM added glycine. The intracellular (I) and extracellular (E) specific activity of 14 C glycine was determined by HPLC of phenylisothiocyanate derivatives of neutralized PCA extracts. The rates of de novo synthesis when expressed relative to muscle ATP content show slow and fast-twitch red muscles to be similar and about twice as great as fast-twitch white muscles. This could represent a greater turnover of the adenine nucleotide pool in more oxidative red muscle types

  12. A Pareto Algorithm for Efficient De Novo Design of Multi-functional Molecules.

    Daeyaert, Frits; Deem, Micheal W

    2017-01-01

    We have introduced a Pareto sorting algorithm into Synopsis, a de novo design program that generates synthesizable molecules with desirable properties. We give a detailed description of the algorithm and illustrate its working in 2 different de novo design settings: the design of putative dual and selective FGFR and VEGFR inhibitors, and the successful design of organic structure determining agents (OSDAs) for the synthesis of zeolites. We show that the introduction of Pareto sorting not only enables the simultaneous optimization of multiple properties but also greatly improves the performance of the algorithm to generate molecules with hard-to-meet constraints. This in turn allows us to suggest approaches to address the problem of false positive hits in de novo structure based drug design by introducing structural and physicochemical constraints in the designed molecules, and by forcing essential interactions between these molecules and their target receptor. © 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

  13. A Terra em Transe: o cosmopolitismo às avessas do cinema novo

    Angela Prysthon

    2008-11-01

    Full Text Available Usando como referencial teórico os estudos culturais, este artigo analisa o cinema novo brasileiro como parte de uma estratégia terceiro mundista de conceber a cultura. A partir da emergência do conceito de terceiro mundo e das lutas de descolonização nos anos 1950 e 1960, a ideologia cosmopolita foi sendo vista pelos intelectuais de esquerda como a versão cultural da aliança com as forças hegemônicas da Europa e dos Estados Unidos. O projeto do cinema novo chama a atenção por suas afinidades ideológicas com o terceiro mundismo, mas, paradoxalmente, trazendo à tona uma polí­tica cosmopolita da periferia. Palavras-chave cinema novo, identidade, cultura brasileira, terceiro mundismo, estudos culturais. Abstract Using the cultural studies theoretical framework, this paper analyzes the cinema novo movement in Brazil as a part of the Third World conception of culture. Following the creation of the term "Third World" and the international politics of colonial independence of the 1950s and 1960s, a cosmopolitan attitude was seen by the intellectuals of the left as a cultural version of the alliance with the hegemonic forces of Europe and North America. Even though the cinema novo project can be associated with the ideology of an united Third World ,it brings about, paradoxically, a very cosmopolitan politics of the periphery. Key words cinema novo, identity, Brazilian culture, third world, cultural studies.

  14. Precise detection of de novo single nucleotide variants in human genomes.

    Gómez-Romero, Laura; Palacios-Flores, Kim; Reyes, José; García, Delfino; Boege, Margareta; Dávila, Guillermo; Flores, Margarita; Schatz, Michael C; Palacios, Rafael

    2018-05-07

    The precise determination of de novo genetic variants has enormous implications across different fields of biology and medicine, particularly personalized medicine. Currently, de novo variations are identified by mapping sample reads from a parent-offspring trio to a reference genome, allowing for a certain degree of differences. While widely used, this approach often introduces false-positive (FP) results due to misaligned reads and mischaracterized sequencing errors. In a previous study, we developed an alternative approach to accurately identify single nucleotide variants (SNVs) using only perfect matches. However, this approach could be applied only to haploid regions of the genome and was computationally intensive. In this study, we present a unique approach, coverage-based single nucleotide variant identification (COBASI), which allows the exploration of the entire genome using second-generation short sequence reads without extensive computing requirements. COBASI identifies SNVs using changes in coverage of exactly matching unique substrings, and is particularly suited for pinpointing de novo SNVs. Unlike other approaches that require population frequencies across hundreds of samples to filter out any methodological biases, COBASI can be applied to detect de novo SNVs within isolated families. We demonstrate this capability through extensive simulation studies and by studying a parent-offspring trio we sequenced using short reads. Experimental validation of all 58 candidate de novo SNVs and a selection of non-de novo SNVs found in the trio confirmed zero FP calls. COBASI is available as open source at https://github.com/Laura-Gomez/COBASI for any researcher to use. Copyright © 2018 the Author(s). Published by PNAS.

  15. De novo mutations in ATP1A3 cause alternating hemiplegia of childhood

    Heinzen, Erin L; Swoboda, Kathryn J; Hitomi, Yuki

    2012-01-01

    and their unaffected parents to identify de novo nonsynonymous mutations in ATP1A3 in all seven individuals. In a subsequent sequence analysis of ATP1A3 in 98 other patients with AHC, we found that ATP1A3 mutations were likely to be responsible for at least 74% of the cases; we also identified one inherited mutation...... affecting the level of protein expression. This work identifies de novo ATP1A3 mutations as the primary cause of AHC and offers insight into disease pathophysiology by expanding the spectrum of phenotypes associated with mutations in ATP1A3....

  16. NovoTTF™-100A System (Tumor Treating Fields) transducer array layout planning for glioblastoma: a NovoTAL™ system user study.

    Chaudhry, Aafia; Benson, Laura; Varshaver, Michael; Farber, Ori; Weinberg, Uri; Kirson, Eilon; Palti, Yoram

    2015-11-11

    Optune™, previously known as the NovoTTF-100A System™, generates Tumor Treating Fields (TTFields), an effective anti-mitotic therapy for glioblastoma. The system delivers intermediate frequency, alternating electric fields to the supratentorial brain. Patient therapy is personalized by configuring transducer array layout placement on the scalp to the tumor site using MRI measurements and the NovoTAL System. Transducer array layout mapping optimizes therapy by maximizing electric field intensity to the tumor site. This study evaluated physician performance in conducting transducer array layout mapping using the NovoTAL System compared with mapping performed by the Novocure in-house clinical team. Fourteen physicians (7 neuro-oncologists, 4 medical oncologists, and 3 neurosurgeons) evaluated five blinded cases of recurrent glioblastoma and performed head size and tumor location measurements using a standard Digital Imaging and Communications in Medicine reader. Concordance with Novocure measurement and intra- and inter-rater reliability were assessed using relevant correlation coefficients. The study criterion for success was a concordance correlation coefficient (CCC) >0.80. CCC for each physician versus Novocure on 20 MRI measurements was 0.96 (standard deviation, SD ± 0.03, range 0.90-1.00), indicating very high agreement between the two groups. Intra- and inter-rater reliability correlation coefficients were similarly high: 0.83 (SD ±0.15, range 0.54-1.00) and 0.80 (SD ±0.18, range 0.48-1.00), respectively. This user study demonstrated an excellent level of concordance between prescribing physicians and Novocure in-house clinical teams in performing transducer array layout planning. Intra-rater reliability was very high, indicating reproducible performance. Physicians prescribing TTFields, when trained on the NovoTAL System, can independently perform transducer array layout mapping required for the initiation and maintenance of patients on TTFields

  17. Evaluación oxidativa de las mezclas de aceites de leguminosas del Desierto de Sonora con aceites de maíz y soja durante su almacenamiento

    Vázquez-Moreno, L.

    2001-12-01

    Full Text Available During storage, oils from seeds of wild legumes of the Sonoran Desert have shown greater stability than oils derived from conventional sources. In this work, oxidation process was evaluated during the storage (122 day of mixtures of oils: Mezquite Prosopis juliflora, Gatuña Mimosa grahamii, Palo fierro Olneya tesota, Vino rama Acacia constricta, Palo de brea Cercidium praecox and Palo verde Parkinsonia aculeata with oils from soy and maize. Ratios were 1:1, 2:1 and 3:1. Evaluated parameters included: Peroxides (P.V., Iodine (I.V., Acid (A.V., p-Anisidine (p-A values. Results showed that mixtures containing wild and maize oil showed 2-4 meq/Kg as initial values of iodine, while after 122 days of storage the value was 4-7 meq/Kg. Mixtures containing soy oil presented 3-6 meq-Kg initially, and 8-15 meq-Kg were detected at the end experiment. No differences were observed in I.V. and A.V. values in maize mixtures. On the contrary, mixtures containing soy oil presented increments in I.V. Also, A.V. presented a slight increment in 1:1 mixtures. p-Anisidine values presented and small increment in maize mixtures (3:1 ratio while this increment was larger in mixtures containing soy oils and Gatuña or Palo fierro oil. These latter oils when were mixed with maize oils presented the lowest increments in all evaluated indexes.The oils of palo fierro and blended gatuña with oil of corn didn’t present changes in their concentration in the palmitic and araquidic acid during the storage. The concentration of the oleic acid in the mezquite oils (3:1, gatuña (1:1, 2:1 and 3:1, vinorama (3:1, as well as the linoleic and erucic acids in gatuña in their three mixtures didn’t present changes neither alteration during the storage, for what you are considered the oils of palo fierro, gatuña and vinorama the most stable in the present study.Los aceites de semillas de leguminosas silvestres han mostrado mayor estabilidad que algunos aceites convencionales

  18. Crescimento, nutrição e fixação biológica de nitrogênio em plantios mistos de eucalipto e leguminosas arbóreas Growth, nutrition and biological fixation of nitrogen in mixed-species plantations of eucalypt with leguminous trees

    Selma Regina de Freitas Coelho

    2007-06-01

    Full Text Available O objetivo deste trabalho foi avaliar o crescimento inicial da parte aérea e do sistema radicular, a nutrição mineral e a fixação biológica de N2 (FBN em plantios consorciados de Eucalyptus grandis e leguminosas arbóreas. O delineamento experimental foi o de blocos ao acaso com três repetições e sete tratamentos por bloco. Nas linhas de plantio, entre as plantas de E. grandis, foram plantadas, intercaladamente, leguminosas arbóreas nativas de matas brasileiras - Peltophorum dubium, Inga sp., Mimosa scabrella, Acacia polyphylla, Mimosa caesalpiniaefolia - e uma leguminosa exótica, Acacia mangium. Realizou-se, também, o plantio puro de E. grandis. Mimosa scabrella e A. mangium foram as leguminosas com maior crescimento. Eucalyptus grandis consorciado com M. scabrella cresceu menos, no entanto foi o povoamento com maior acumulação de biomassa. As densidades de raízes finas (DRF do E. grandis foram 6 a 20 vezes maiores que as DRF das leguminosas na camada superficial do solo (0-10 cm 24 meses após plantio. A DRF de M. scabrella e de M. caesalpiniaefolia foi maior na camada 30-50 cm e menor na camada 10-30 cm. Os valores de delta15N da M. scabrella indicam que 90% do N acumulado em seus tecidos é oriundo da FBN.The objective of this work was to assess interactions between species on the above and belowground growth, nitrogen uptake and biological nitrogen fixation (BNF in mixed stands of Eucalyptus grandis and native leguminous N2-fixing trees. A complete randomized block design was installed with seven treatments and three blocks. Within the lines of the E. grandis seedlings, native leguminous N2-fixing trees - Peltophorum dubium, Inga sp., Mimosa scabrella, Acacia polyphylla, Mimosa caesalpiniaefolia - and one exotic leguminous plant, Acacia mangium, were intercropped. E. grandis was also solely planted. Mimosa scabrella and A. mangium were the legume trees that presented the highest growth. Although E. grandis showed a lower

  19. Analysis of 60 706 Exomes Questions the Role of De Novo Variants Previously Implicated in Cardiac Disease

    Paludan-Müller, Christian; Ahlberg, Gustav; Ghouse, Jonas

    2017-01-01

    BACKGROUND: De novo variants in the exome occur at a rate of 1 per individual per generation, and because of the low reproductive fitness for de novo variants causing severe disease, the likelihood of finding these as standing variations in the general population is low. Therefore, this study...... sought to evaluate the pathogenicity of de novo variants previously associated with cardiac disease based on a large population-representative exome database. METHODS AND RESULTS: We performed a literature search for previous publications on de novo variants associated with severe arrhythmias...... trio studies (>1000 subjects). Of the monogenic variants, 11% (23/211) were present in ExAC, whereas 26% (802/3050) variants believed to increase susceptibility of disease were identified in ExAC. Monogenic de novo variants in ExAC had a total allele count of 109 and with ≈844 expected cases in Ex...

  20. Leguminosas e seus efeitos sobre propriedades físicas do solo e produtividade do mamoeiro 'Tainung 1' Leguminous plants and their effects on soil physical properties and productivity of papaya 'Tainung 1'

    José Eduardo Borges de Carvalho

    2004-08-01

    Full Text Available Conduziu-se um experimento no período de junho 1998 a dezembro de 2000 na Escola de Agronomia da Universidade Federal da Bahia, em Cruz das Almas, em um Latossolo Amarelo álico coeso para avaliar o impacto do manejo de práticas melhoradoras sobre as propriedades físicas desses solos e a produtividade do mamoeiro. Os tratamentos foram: 1- capina em área total; 2- grade nas entrelinhas e herbicida nas linhas de plantio; 3- capina em área total + subsolagem; 4- subsolagem + feijão-de-porco (Canavalia ensiformis nas ruas da cultura; 5- Subsolagem + crotalária (Crotalaria juncea nas ruas da cultura; 6- subsolagem + caupi (Vigna uguiculata nas ruas da cultura; 7- subsolagem + calagem + gesso agrícola e feijão-de-porco nas ruas da cultura; 8- subsolagem + vegetação nativa nas ruas da cultura, roçada quando necessária. O delineamento experimental foi em blocos casualizados, com três repetições. Cada parcela foi composta por 36 plantas das quais 16 úteis, em espaçamento de 3 x 2 m. A subsolagem foi realizada de forma cruzada antes do plantio nos tratamentos correspondentes. As leguminosas foram plantadas em maio/junho e roçadas em setembro/outubro. O controle do mato nas linhas foi mecânico (T1 e T3 e químico com glifosato na dose de 1% v/v nos demais. Os tratamentos manejados nas entrelinhas da cultura do mamão com leguminosas proporcionaram as maiores alterações nas propriedades físicas de um Latossolo Amarelo álico coeso. Os tratamentos manejados com leguminosas e vegetação espontânea foram os que mais se evidenciaram em produtividade, expressada pelo peso total de frutos (PTF, em toneladas por hectare, e em número total de frutos por hectare NTF.An experiment was carried out at the Agronomy School of Federal University of Bahia, Brazil, Cruz das Almas, during the period of June 1998 to December 2000, with the objective of evaluating the impact of good management practices on soil physical properties of an alic and

  1. Long-read sequencing and de novo assembly of a Chinese genome

    Short-read sequencing has enabled the de novo assembly of several individual human genomes, but with inherent limitations in characterizing repeat elements. Here we sequence a Chinese individual HX1 by single-molecule real-time (SMRT) long-read sequencing, construct a physical map by NanoChannel arr...

  2. A De novo Mutation in Dystrophin Causing Muscular Dystrophy in a Female Patient

    Hao Yu

    2017-01-01

    Conclusions: We identified two novel de novo mutations of DMD gene in two Chinese pedigrees, one of which caused a female patient with muscular dystrophy. The mutational analysis is important for DMD patients and carriers in the absence of a family history. The NGS can help detect the mutations in MLPA-negative patients.

  3. Effect of haemodilution, acidosis, and hypothermia on the activity of recombinant factor VIIa (NovoSeven)

    Viuff, D.; Lauritzen, B.; Pusateri, A.E.

    2008-01-01

    BACKGROUND: A range of plasma volume expanders is used clinically, often in settings where haemostasis may already be impaired. The haemostatic agent, recombinant activated factor VII (rFVIIa, NovoSeven), may be used to improve haemostasis but potential interactions with different volume expanders...

  4. Optimization of treatment protocols to prevent de novo development of antibiotic resistance in Pseudomonas aeruginosa

    Feng, Yanfang

    2016-01-01

    The ever-increasing rate of drug resistant bacteria has been one of the most challenging problem worldwide. This thesis studied the following subjects with mostly the clinically leading pathogen, P. aeruginosa, as the model strain: de novo development of antibiotic resistance in patient during the

  5. Norgal: Extraction and de novo assembly of mitochondrial DNA from whole-genome sequencing data

    Al-Nakeeb, Kosai Ali Ahmed; Petersen, Thomas Nordahl; Sicheritz-Pontén, Thomas

    2017-01-01

    and performing a de novo assembly on a subset of reads that contains these k-mers. The method was applied to WGS data from a panda, brown algae seaweed, butterfly and filamentous fungus. We were able to extract full circular mitochondrial genomes and obtained sequence identities to the reference sequences...

  6. 76 FR 61103 - Draft Guidance for Industry and Food and Drug Administration Staff; De Novo Classification...

    2011-10-03

    ... DEPARTMENT OF HEALTH AND HUMAN SERVICES Food and Drug Administration [Docket No. FDA-2011-D-0689] Draft Guidance for Industry and Food and Drug Administration Staff; De Novo Classification Process... appropriate, and other forms of information technology. Draft Guidance for Industry and Food and Drug...

  7. De novo post-pollen mitosis II tobacco pollen tube transcriptome

    Hafidh, Said; Breznenová, Katarína; Honys, David

    2012-01-01

    Roč. 7, č. 8 (2012), s. 918-921 ISSN 1559-2316 R&D Projects: GA ČR GPP501/11/P321; GA ČR GA522/09/0858 Institutional research plan: CEZ:AV0Z50380511 Keywords : de novo pollen tube transcriptome * male gametophyte development * pollen tube growth Subject RIV: ED - Physiology

  8. De novo mutations of KIAA2022 in females cause intellectual disability and intractable epilepsy

    de Lange, Iris M; Helbig, Katherine L; Weckhuysen, Sarah; Møller, Rikke S; Velinov, Milen; Dolzhanskaya, Natalia; Marsh, Eric; Helbig, Ingo; Devinsky, Orrin; Tang, Sha; Mefford, Heather C; Myers, Candace T; van Paesschen, Wim; Striano, Pasquale; van Gassen, Koen; van Kempen, Marjan; de Kovel, Carolien G F; Piard, Juliette; Minassian, Berge A; Nezarati, Marjan M; Pessoa, André; Jacquette, Aurelia; Maher, Bridget; Balestrini, Simona; Sisodiya, Sanjay; Warde, Marie Therese Abi; De St Martin, Anne; Chelly, Jamel; van 't Slot, Ruben; Van Maldergem, Lionel; Brilstra, Eva H; Koeleman, Bobby P C

    2016-01-01

    BACKGROUND: Mutations in the KIAA2022 gene have been reported in male patients with X-linked intellectual disability, and related female carriers were unaffected. Here, we report 14 female patients who carry a heterozygous de novo KIAA2022 mutation and share a phenotype characterised by intellectual

  9. Inflammatory bowel disease after liver transplantation : Risk factors for recurrence and De novo disease

    Verdonka, RC; Dijkstra, G; Haagsma, EB; Shostrom, VK; Van den Berg, AP; Kleibeuker, JH

    Inflammatory bowel disease (IBD) is associated with primary sclerosing cholangitis (PSC) and autoimmune hepatitis (AIH) and can recur or develop de novo after orthotopic liver transplantation (OLT). The aim of this study was to investigate the incidence and severity of IBD after liver

  10. Drug-Eluting Balloons in the Treatment of Coronary De Novo Lesions

    Richelsen, Rasmus Kapalu Broge; Overvad, Thure Filskov; Jensen, Svend Eggert

    2016-01-01

    Drug-eluting balloons (DEBs) have emerged as a new application in percutaneous coronary intervention. DEBs have proven successful in the treatment of in-stent restenosis, but their role in de novo lesions is less clear. This paper provides a review of the current studies where DEBs have been used...

  11. Whole-genome sequencing in autism identifies hot spots for de novo germline mutation

    Michaelson, Jacob J.; Shi, Yujian; Gujral, Madhusudan

    2012-01-01

    De novo mutation plays an important role in autism spectrum disorders (ASDs). Notably, pathogenic copy number variants (CNVs) are characterized by high mutation rates. We hypothesize that hypermutability is a property of ASD genes and may also include nucleotide-substitution hot spots. We...

  12. The Key Drivers behind Novo Nordisk’s Growth in the Diabetes Market in China

    Hind Louiza CHITOUR

    2013-12-01

    Full Text Available To enter the Chinese Pharmaceutical market, “Big Pharma” has adopted different strategies to tackle the challenges specific to the country in terms of size, demographics, specific sales channels and logistics adjustments. While the majority of Global Pharmaceutical players have opted for an aggressive M&A approach to penetrate the Chinese market and gain local insight; the Danish Novo Nordisk has instead chosen a strategy focusing on innovation and developing its R&D structure to capitalize on the local talent pool. To illustrate Novo Nordisk’s growth strategy in the Mainland, we analyzed its competitiveness in the diabetes market by demonstrating the key drivers behind this success. We applied a various set of tools for this research: Novo Nordisk, Dong Bao Pharmaceutical executives’ interviews and personal observations accounting for the primary data, we also reviewed secondary data to perform a PEST analysis in addition to Porter’s competitive advantage model in order to extract the reasons behind Novo Nordisk’s marching success in the Mainland.

  13. A glance at quality score: implication for de novo transcriptome reconstruction of Illumina reads

    Stanley Kimbung Mbandi

    2014-02-01

    Full Text Available Downstream analyses of short-reads from next-generation sequencing platforms are often preceded by a pre-processing step that removes uncalled and wrongly called bases. Standard approaches rely on their associated base quality scores to retain the read or a portion of it when the score is above a predefined threshold. It is difficult to differentiate sequencing error from biological variation without a reference using quality scores. The effects of quality score based trimming have not been systematically studied in de novo transcriptome assembly. Using RNA-Seq data produced from Illumina, we teased out the effects of quality score base filtering or trimming on de novo transcriptome reconstruction. We showed that assemblies produced from reads subjected to different quality score thresholds contain truncated and missing transfrags when compared to those from untrimmed reads. Our data supports the fact that de novo assembling of untrimmed data is challenging for de Bruijn graph assemblers. However, our results indicates that comparing the assemblies from untrimmed and trimmed read subsets can suggest appropriate filtering parameters and enable selection of the optimum de novo transcriptome assembly in non-model organisms.

  14. Evaluation of effect of Ophiostoma novo-ulmi on four major wood ...

    Evaluation of effect of Ophiostoma novo-ulmi on four major wood species of the elm family in Rasht (North West of Iran) ... the diameter size of vessels and the number of xylary rays in four species: Ulmus carpinifolia, Ulmus glabra, Zelkova carpinifolia and Celtis australis as important factors in host resistance to elm disease.

  15. De novo formation of centrosomes in vertebrate cells arrested during S phase

    Khodjakov, A; Rieder, CL; Sluder, G; Cassels, G; Sibon, O; Wang, CL

    2002-01-01

    The centrosome usually replicates in a semiconservative fashion, i.e., new centrioles form in association with preexisting "maternal" centrioles. De novo formation of centrioles has been reported for a few highly specialized cell types but it has not been seen in vertebrate somatic cells. We find

  16. Robust de novo pathway enrichment with KeyPathwayMiner 5

    Alcaraz, Nicolas; List, Markus; Dissing-Hansen, Martin

    2016-01-01

    Identifying functional modules or novel active pathways, recently termed de novo pathway enrichment, is a computational systems biology challenge that has gained much attention during the last decade. Given a large biological interaction network, KeyPathwayMiner extracts connected subnetworks tha...

  17. De novo insertions and deletions of predominantly paternal origin are associated with autism spectrum disorder

    Dong, Shan; Walker, Michael F.; Carriero, Nicholas J.; DiCola, Michael; Willsey, A. Jeremy; Ye, Adam Y.; Waqar, Zainulabedin; Gonzalez, Luis E.; Overton, John D.; Frahm, Stephanie; Keaney, John F.; Teran, Nicole A.; Dea, Jeanselle; Mandell, Jeffrey D.; Bal, Vanessa Hus; Sullivan, Catherine A.; DiLullo, Nicholas M.; Khalil, Rehab O.; Gockley, Jake; Yuksel, Zafer; Sertel, Sinem M.; Ercan-Sencicek, A. Gulhan; Gupta, Abha R.; Mane, Shrikant M.; Sheldon, Michael; Brooks, Andrew I.; Roeder, Kathryn; Devlin, Bernie; State, Matthew W.; Wei, Liping; Sanders, Stephan J.

    2014-01-01

    SUMMARY Whole-exome sequencing (WES) studies have demonstrated the contribution of de novo loss-of-function single nucleotide variants to autism spectrum disorders (ASD). However, challenges in the reliable detection of de novo insertions and deletions (indels) have limited inclusion of these variants in prior analyses. Through the application of a robust indel detection method to WES data from 787 ASD families (2,963 individuals), we demonstrate that de novo frameshift indels contribute to ASD risk (OR=1.6; 95%CI=1.0-2.7; p=0.03), are more common in female probands (p=0.02), are enriched among genes encoding FMRP targets (p=6×10−9), and arise predominantly on the paternal chromosome (p<0.001). Based on mutation rates in probands versus unaffected siblings, de novo frameshift indels contribute to risk in approximately 3.0% of individuals with ASD. Finally, through observing clustering of mutations in unrelated probands, we report two novel ASD-associated genes: KMT2E (MLL5), a chromatin regulator, and RIMS1, a regulator of synaptic vesicle release. PMID:25284784

  18. Novo Jornalismo: fronteiras litero-factuais em A sangue Frio e em Radical Chique

    Francisco Aquinei Timóteo Queirós

    2012-12-01

    Full Text Available A pesquisa busca analisar de que forma fato e ficção se entrecruzam no “movimento” do Novo Jornalismo, a partir das obras A sangue Frio e Radical Chique e o Novo Jornalismo, de Truman Capote e Tom Wolfe, respectivamente. Pretende-se, a partir da investigação do corpus em estudo, revelar os aspectos que aproximam o fato jornalístico, a notícia e a reportagem às técnicas literárias do romance, do conto e da crônica. O estudo investiga o Novo Jornalismo sob o viés de textos centrais das áreas de teoria literária e estudos jornalísticos utilizando autores como Mikhail Bakhtin, Hayden White, Paul Ricoeur, Muniz Sodré; além de referenciar outros escritores que, como Tom Wolfe e Truman Capote, fizeram parte de um grande movimento renovador do jornalismo literário nos anos 1950, 1960 e 1970 chamado, genericamente, de Novo Jornalismo.

  19. CycloBranch: De Novo Sequencing of Nonribosomal Peptides from Accurate Product Ion Mass Spectra

    Novák, Jiří; Lemr, Karel; Schug, K. A.; Havlíček, Vladimír

    2015-01-01

    Roč. 26, č. 10 (2015), s. 1780-1786 ISSN 1044-0305 R&D Projects: GA ČR(CZ) GAP206/12/1150 Grant - others:OPPC(XE) CZ.2.16/3.1.00/24023 Institutional support: RVO:61388971 Keywords : De novo sequencing * Nonribosomal peptides * Linear Subject RIV: CE - Biochemistry Impact factor: 3.031, year: 2015

  20. Novo Jornalismo: fronteiras litero-factuais em A sangue Frio e em Radical Chique

    Francisco Aquinei Timóteo Queirós

    2012-03-01

    Full Text Available http://dx.doi.org/10.5007/1984-784X.2012v12n18p130 A pesquisa busca analisar de que forma fato e ficção se entrecruzam no “movimento” do Novo Jornalismo, a partir das obras A sangue Frio e Radical Chique e o Novo Jornalismo, de Truman Capote e Tom Wolfe, respectivamente. Pretende-se, a partir da investigação do corpus em estudo, revelar os aspectos que aproximam o fato jornalístico, a notícia e a reportagem às técnicas literárias do romance, do conto e da crônica. O estudo investiga o Novo Jornalismo sob o viés de textos centrais das áreas de teoria literária e estudos jornalísticos utilizando autores como Mikhail Bakhtin, Hayden White, Paul Ricoeur, Muniz Sodré; além de referenciar outros escritores que, como Tom Wolfe e Truman Capote, fizeram parte de um grande movimento renovador do jornalismo literário nos anos 1950, 1960 e 1970 chamado, genericamente, de Novo Jornalismo.

  1. Predicting survival of de novo metastatic breast cancer in Asian women: systematic review and validation study.

    Miao, Hui; Hartman, Mikael; Bhoo-Pathy, Nirmala; Lee, Soo-Chin; Taib, Nur Aishah; Tan, Ern-Yu; Chan, Patrick; Moons, Karel G M; Wong, Hoong-Seam; Goh, Jeremy; Rahim, Siti Mastura; Yip, Cheng-Har; Verkooijen, Helena M

    2014-01-01

    In Asia, up to 25% of breast cancer patients present with distant metastases at diagnosis. Given the heterogeneous survival probabilities of de novo metastatic breast cancer, individual outcome prediction is challenging. The aim of the study is to identify existing prognostic models for patients with de novo metastatic breast cancer and validate them in Asia. We performed a systematic review to identify prediction models for metastatic breast cancer. Models were validated in 642 women with de novo metastatic breast cancer registered between 2000 and 2010 in the Singapore Malaysia Hospital Based Breast Cancer Registry. Survival curves for low, intermediate and high-risk groups according to each prognostic score were compared by log-rank test and discrimination of the models was assessed by concordance statistic (C-statistic). We identified 16 prediction models, seven of which were for patients with brain metastases only. Performance status, estrogen receptor status, metastatic site(s) and disease-free interval were the most common predictors. We were able to validate nine prediction models. The capacity of the models to discriminate between poor and good survivors varied from poor to fair with C-statistics ranging from 0.50 (95% CI, 0.48-0.53) to 0.63 (95% CI, 0.60-0.66). The discriminatory performance of existing prediction models for de novo metastatic breast cancer in Asia is modest. Development of an Asian-specific prediction model is needed to improve prognostication and guide decision making.

  2. De novo nonsense mutations in ASXL1 cause Bohring-Opitz syndrome

    Hoischen, Alexander; van Bon, Bregje W. M.; Rodríguez-Santiago, Benjamín; Gilissen, Christian; Vissers, Lisenka E. L. M.; de Vries, Petra; Janssen, Irene; van Lier, Bart; Hastings, Rob; Smithson, Sarah F.; Newbury-Ecob, Ruth; Kjaergaard, Susanne; Goodship, Judith; McGowan, Ruth; Bartholdi, Deborah; Rauch, Anita; Peippo, Maarit; Cobben, Jan M.; Wieczorek, Dagmar; Gillessen-Kaesbach, Gabriele; Veltman, Joris A.; Brunner, Han G.; de Vries, Bert B. B. A.

    2011-01-01

    Bohring-Opitz syndrome is characterized by severe intellectual disability, distinctive facial features and multiple congenital malformations. We sequenced the exomes of three individuals with Bohring-Opitz syndrome and in each identified heterozygous de novo nonsense mutations in ASXL1, which is

  3. De novo mutations of KIAA2022 in females cause intellectual disability and intractable epilepsy

    de Lange, Iris M; Helbig, Katherine L; Weckhuysen, Sarah

    2016-01-01

    BACKGROUND: Mutations in the KIAA2022 gene have been reported in male patients with X-linked intellectual disability, and related female carriers were unaffected. Here, we report 14 female patients who carry a heterozygous de novo KIAA2022 mutation and share a phenotype characterised by intellect...

  4. Wound complications and surgical events in de novo heart transplant patients treated with everolimus

    Rashidi, Mitra; Esmaily, Sorosh; Fiane, Arnt E

    2016-01-01

    OBJECTIVES: The use of mammalian target of rapamycin (mTOR) inhibitors have been limited by adverse events (AE), including delayed wound healing. We retrospectively reviewed all AE and serious AE (SAE) in The Scandinavian heart transplant (HTx) everolimus (EVE) de novo trial with early calcineurin...

  5. Associations between Familial Rates of Psychiatric Disorders and De Novo Genetic Mutations in Autism

    Kyleen Luhrs

    2017-01-01

    Full Text Available The purpose of this study was to examine the confluence of genetic and familial risk factors in children with Autism Spectrum Disorder (ASD with distinct de novo genetic events. We hypothesized that gene-disrupting mutations would be associated with reduced rates of familial psychiatric disorders relative to structural mutations. Participants included families of children with ASD in four groups: de novo duplication copy number variations (DUP, n=62, de novo deletion copy number variations (DEL, n=74, de novo likely gene-disrupting mutations (LGDM, n=267, and children without a known genetic etiology (NON, n=2111. Familial rates of psychiatric disorders were calculated from semistructured interviews. Results indicated overall increased rates of psychiatric disorders in DUP families compared to DEL and LGDM families, specific to paternal psychiatric histories, and particularly evident for depressive disorders. Higher rates of depressive disorders in maternal psychiatric histories were observed overall compared to paternal histories and higher rates of anxiety disorders were observed in paternal histories for LGDM families compared to DUP families. These findings support the notion of an additive contribution of genetic etiology and familial factors are associated with ASD risk and highlight critical need for continued work targeting these relationships.

  6. A recurrent de novo mutation in KCNC1 causes progressive myoclonus epilepsy

    Muona, M.; Berkovic, S. F.; Dibbens, L. M.

    2015-01-01

    Progressive myoclonus epilepsies (PMEs) are a group of rare, inherited disorders manifesting with action myoclonus, tonicclonic seizures and ataxia. We sequenced the exomes of 84 unrelated individuals with PME of unknown cause and molecularly solved 26 cases (31%). Remarkably, a recurrent de novo...

  7. Sucessão vegetal em uma encosta reflorestada com leguminosas arbóreas em Angra dos Reis, RJ Natural succession under a nitrogen-fixing legume trees stand in a hillside at Angra dos Reis - RJ, Brazil

    Sylvia de Souza Chada

    2004-12-01

    Full Text Available Em uma encosta reflorestada há sete anos com leguminosas arbóreas (Acacia auriculiformis, A. mangium e Mimosa tenuiflora em Angra dos Reis, RJ, foi avaliada a composição florística e fitossociológica da regeneração natural, comparando-as com as de um fragmento de Mata Secundária situado a 200 m de distância. Foram considerados os três terços da encosta, com declividades decrescentes. Em 12 parcelas de 200 m², quatro em cada terço da encosta, foram amostrados 699 indivíduos vegetais a partir de 40 cm de altura, distribuídos em 25 famílias e 50 espécies. As famílias com maior nº de indivíduos foram Meliaceae (298, Euphorbiaceae (70, Piperaceae (64 e Lauraceae (41. Já as famílias com maior nº de espécies foram Solanaceae (7, Melastomataceae (5 e Myrtaceae (5. As leguminosas plantadas não estavam regenerando na própria área. A evolução da sucessão natural apresentou um gradiente de desenvolvimento em razão da menor declividade e menor distância dos remanescentes florestais, com maior densidade de indivíduos e maior riqueza de espécies na área de menor declividade.The floristic composition and natural regeneration under a 7-year-old legume tree plantation (Acacia auriculiformis, A. mangium e Mimosa tenuiflora was investigated in comparing with a secondary forest 200 m away at Angra dos Reis, RJ. The hillside was divided in 3 parts following the slope. The lower part of the hillside was the nearest to the natural forest remnant. In 12 plots with 200 m² each, 4 of them in each section of the hillside, 699 plants larger then 40 cm height were observed, distributed in 25 families and 50 species. The families with the most individuals were Meliaceae (298, Euphorbiaceae (70, Piperaceae (64 and Lauraceae (41. The families with the most species were Solanaceae (7, Melastomataceae (5 and Myrtaceae (5. None of the legume species introduced in the area had produced natural regeneration. The evolution of natural succession

  8. Renovação de pastagem degradada com calagem, adubação e leguminosa consorciada em Neossolo Quartzarênico = Degraded pasture recovering with liming, fertilization, and associated legume in Quartzipsament

    Edimilson Volpe

    2008-01-01

    Full Text Available A degradação é considerada o maior problema das pastagens cultivadas no Cerrado. Em Neossolo Quartzarênico, foi conduzido um experimento para avaliar diversos tratamentos de renovação de pastagem degradada de Brachiaria decumbens, introduzindo Brachiaria brizantha cv. Marandu. Os tratamentos foram: Testemunha; Calagem; Calagem +P; Calagem + ½(PK; Calagem + PK; Calagem + PK + Micronutrientes; Calagem + PK + Micronutrientes + Leguminosa. O delineamento experimental foi de blocos casualizados, com quatro repetições. Realizaram-se três cortes, em 325 dias, e, ao final, avaliação da produção de raízes e análise química do solo. Todos os tratamentos derenovação diferiram da testemunha e alguns deles diferiram entre si na produção de massa seca da parte aérea, destacando-se o tratamento com leguminosa. A produção de raízes foi significativamente superior em três tratamentos quando comparados à testemunha. Foramverificados aumentos significativos nos teores de nutrientes e pH do solo, com a aplicação de calcário e fertilizantes.The degradation is considered to be the major problem of cultivated pastures in the Cerrado. In Quartzipsament, an experiment wasconducted to evaluate several degraded pasture recovering treatments of Brachiaria decumbens, introducing Brachiaria brizantha cv. Marandu. The treatments were: Witness; Liming; Liming + P; Liming + ½(PK; Liming + PK. Liming + PK + Micronutrients; Liming + PK + Micronutrients + Legume. The experimental design was that ofrandomized blocks with four replications. Three cuts in a 325 days period were done and, in the end, the evaluation of roots production and soil chemical analysis. All renovation systems differed from the witness and some of them differed among themselves in terms ofdry mass of aerial portion, with emphasis to the legume treatment. The roots production was significantly greater in three treatments when compared to the witness. Significant increases in the

  9. Barbechos mejorados con leguminosas: una promisoria alternativa agroecológica para el manejo alelopático de malezas y mejoramiento del cultivo de arroz y maíz en los Llanos de Colombia

    Delgado H. Hernando

    2009-08-01

    Full Text Available

    El manejo químico de malezas en arroz asciende hasta un 20% de los costos totales del cultivo, bajando así su rentabilidad. Buscando explorar alternativas de manejo, el presente trabajo evaluó el efecto de tres sistemas de labranza, cuatro barbechos mejorados con leguminosas, el barbecho nativo y tres dosis de herbicidas, sobre la densidad total de malezas resurgentes dentro de los cultivos, algunas propiedades del suelo y el rendimiento del arroz y el maíz. El ensayo se llevó a cabo en el Centro de Investigación La Libertad (Villavicencio y en dos fincas en la zona del Ariari, bajo un diseño experimental de parcelas subdivididas con tres repeticiones. Mucuna deeringianum (Bort. Smal presentó los más fuertes efectos alelopáticos, con porcentajes promedio de control de malezas –adicionales al efecto de los herbicidas– entre 41 y 62%; seguida de Crotalaria ochroleuca G. Don, con porcentajes de control entre 27 y 46%. Por esta razón, dosis de herbicidas reducidas al 70% de las comerciales mostraron adecuados niveles de control. Es así que los rendimientos de arroz secano favorecido y maíz en la zona del Ariari llegaron a ser incluso superiores a los obtenidos con dosis completas de herbicidas, aunque sin mostrar diferencias significativas. Ambas leguminosas aumentaron el rendimiento del arroz secano favorecido hasta en 1.446 kg ha-1, y mejoraron algunas propiedades físicas, químicas y biológicas del suelo, en tanto que únicamente C. ochroleuca incrementó la producción de maíz en 331 kg ha-1. Los múltiples e integrales beneficios agronómicos obtenidos con el uso de un período de barbecho mejorado muestran su potencial para el manejo alelopático de malezas, y como práctica agroecológica en cultivos de arroz y maíz.

  10. The impact of employee satisfaction on productivity in Tiskarna Novo mesto, Ltd.

    Simona Cimperman

    2016-06-01

    Full Text Available Research Question: Does employee satisfaction, impact on productivity? How are these two variables associated? What is the job satisfaction in Tiskarna Novo mesto, Ltd. What needs to be done to make employees more satisfied at work and, consequently, more productive? Purpose: The purpose of the study is to determine what are the factors that influence employee satisfaction Tiskarna Novo mesto, Ltd. and check the connection between work satisfaction and employee productivity. The aim of the research is to examine what is the level of job satisfaction of employees in Tiskarna Novo mesto, Ltd. And find our reasons and factors that prevent employees were satisfied in the workplace. Method: In this study we used a descriptive method and the method of combining the study of domestic and foreign literature. Pending the results we have come to interview employees in the Tiskarna Novo mesto, Ltd. Results: We conducted a survey among employees in Tiskarna Novo mesto, Ltd and we came to the conclusion that the employees are medium satisfied – the average grade point job satisfaction of employees was 3.1 (evaluated on a 5-point Likert scale. The worst assessed was factor in job satisfaction opportunity for advancement and educational opportunities. We have found out that factors like receiving praise and awards as well as good interpersonal relations are those that affect good on job satisfaction, on the other hand conflict is the one that reduces job satisfaction. The existence of links between work satisfaction and productivity were not found (r = -0.061. Organization: The organization and managers, it is important to know which are the factors by which employees are satisfied or dissatisfied. Results of the research will give managers a clear picture of the factors of satisfaction / dissatisfaction and opinion on productivity. Society: The employees it means a lot to have your job satisfaction and consequently they are more productive. Originality: The

  11. TRANSPORT OF PATIENTS FOR PRIMARY PTCA FROM GENERAL HOSPITAL NOVO MESTO TO LJUBLJANA IN 2002

    Renata Okrajšek

    2004-12-01

    Full Text Available Background. The treatment of acute coronary syndrome (ACS with ST-segment elevation with primary percutaneous transluminal coronary angioplasty (PTCA is the best way to treat these patients. Primary PTCA is also practicable with patients who are admitted into institution without catheter laboratory. The transport of patients into the tertiary institution is safe, but it is important to keep the time of ischemia as short as possible and to reach the time interval of door-balloon as recommended by the guidelines. The ACS patients with ST-segment elevation that were directed into General Hospital Novo mesto after examination at the internistic emergency department have been redirected to KC Ljubljana for realization of PTCA since October 2001.Methods. A prospective analysis of patients with ACS with STsegment elevation, who had been transferred from General Hospital Novo mesto to KC Ljubljana in the period from January 1, 2002 to December 31, 2002 to have a primary PTCA, was performed. The analysis comprised the following: the time interval of handling the patients at Internistic department of General Hospital Novo mesto, the time of transport of patients to Ljubljana and total time interval from the arrival of patients to General Hospital Novo mesto to the first inflation of balloon in Ljubljana. We monitored the complications that occurred during the treatment of the patients.Results. In the above mentioned period 29 patients (24 males and 5 females were transported from the General Hospital Novo mesto to the KC Ljubljana to have a primary PTCA performed. The total time interval measured between the patients’ arrival to General Hospital Novo mesto to the first inflation of balloon in Ljubljana in the year 2002 was 145 minutes, which is 17 minutes better than in the previous period. The time interval recommended by the guidelines was achieved with four patients.Conclusions. By recognizing the problems that had encountered with directing the

  12. A prognostic scoring model for survival after locoregional therapy in de novo stage IV breast cancer.

    Kommalapati, Anuhya; Tella, Sri Harsha; Goyal, Gaurav; Ganti, Apar Kishor; Krishnamurthy, Jairam; Tandra, Pavan Kumar

    2018-05-02

    The role of locoregional treatment (LRT) remains controversial in de novo stage IV breast cancer (BC). We sought to analyze the role of LRT and prognostic factors of overall survival (OS) in de novo stage IV BC patients treated with LRT utilizing the National Cancer Data Base (NCDB). The objective of the current study is to create and internally validate a prognostic scoring model to predict the long-term OS for de novo stage IV BC patients treated with LRT. We included de novo stage IV BC patients reported to NCDB between 2004 and 2015. Patients were divided into LRT and no-LRT subsets. We randomized LRT subset to training and validation cohorts. In the training cohort, a seventeen-point prognostic scoring system was developed based on the hazard ratios calculated using Cox-proportional method. We stratified both training and validation cohorts into two "groups" [group 1 (0-7 points) and group 2 (7-17 points)]. Kaplan-Meier method and log-rank test were used to compare OS between the two groups. Our prognostic score was validated internally by comparing the OS between the respective groups in both the training and validation cohorts. Among 67,978 patients, LRT subset (21,200) had better median OS as compared to that of no-LRT (45 vs. 24 months; p < 0.0001). The group 1 and group 2 in the training cohort showed a significant difference in the 3-year OS (p < 0.0001) (68 vs. 26%). On internal validation, comparable OS was seen between the respective groups in each cohort (p = 0.77). Our prognostic scoring system will help oncologists to predict the prognosis in de novo stage IV BC patients treated with LRT. Although firm treatment-related conclusions cannot be made due to the retrospective nature of the study, LRT appears to be associated with a better OS in specific subgroups.

  13. De Novo Heart Failure After Kidney Transplantation: Trends in Incidence and Outcomes.

    Lenihan, Colin R; Liu, Sai; Deswal, Anita; Montez-Rath, Maria E; Winkelmayer, Wolfgang C

    2018-03-29

    Heart failure is an important cause of morbidity and mortality following kidney transplantation. Some studies in the general population have shown that the incidence of heart failure has decreased during the past 20 years. However, it is not currently known whether such a trend exists in the kidney transplantation population. Retrospective observational cohort study. Adult patients included in the US Renal Data System who underwent their first kidney transplantation in the United States between 1998 and 2010 with at least 6 months of continuous Medicare parts A and B coverage before transplantation and no prior evidence for a diagnosis of heart failure before kidney transplantation. Calendar year of transplantation and calendar year of posttransplantation heart failure diagnosis. De novo posttransplantation heart failure defined using International Classification of Diseases, Ninth Revision diagnosis codes and mortality following de novo posttransplantation heart failure diagnosis. Secular trends in de novo post-kidney transplantation heart failure were examined using Cox proportional hazards analysis. Within a study cohort of 48,771 patients, 7,269 developed de novo heart failure within 3 years of kidney transplantation, with a median time to heart failure of 0.76 years. The adjusted HR for heart failure with death as competing risk comparing patients who underwent transplantation in 2010 with those who underwent transplantation in 1998 was 0.69 (95% CI, 0.60-0.79). No temporal trend in mortality following a diagnosis of post-kidney transplantation heart failure was observed. Potential residual confounding from either incorrectly ascertained or unavailable confounders. The cohort was limited to Medicare beneficiaries. Adjusted for demographic and clinical characteristics, the risk for developing de novo post-kidney transplantation heart failure has declined significantly between 1998 and 2010, with no apparent change in subsequent mortality. Copyright © 2018

  14. Hominoid-specific de novo protein-coding genes originating from long non-coding RNAs.

    Chen Xie

    2012-09-01

    Full Text Available Tinkering with pre-existing genes has long been known as a major way to create new genes. Recently, however, motherless protein-coding genes have been found to have emerged de novo from ancestral non-coding DNAs. How these genes originated is not well addressed to date. Here we identified 24 hominoid-specific de novo protein-coding genes with precise origination timing in vertebrate phylogeny. Strand-specific RNA-Seq analyses were performed in five rhesus macaque tissues (liver, prefrontal cortex, skeletal muscle, adipose, and testis, which were then integrated with public transcriptome data from human, chimpanzee, and rhesus macaque. On the basis of comparing the RNA expression profiles in the three species, we found that most of the hominoid-specific de novo protein-coding genes encoded polyadenylated non-coding RNAs in rhesus macaque or chimpanzee with a similar transcript structure and correlated tissue expression profile. According to the rule of parsimony, the majority of these hominoid-specific de novo protein-coding genes appear to have acquired a regulated transcript structure and expression profile before acquiring coding potential. Interestingly, although the expression profile was largely correlated, the coding genes in human often showed higher transcriptional abundance than their non-coding counterparts in rhesus macaque. The major findings we report in this manuscript are robust and insensitive to the parameters used in the identification and analysis of de novo genes. Our results suggest that at least a portion of long non-coding RNAs, especially those with active and regulated transcription, may serve as a birth pool for protein-coding genes, which are then further optimized at the transcriptional level.

  15. De Novo Insertions and Deletions of Predominantly Paternal Origin Are Associated with Autism Spectrum Disorder

    Shan Dong

    2014-10-01

    Full Text Available Summary: Whole-exome sequencing (WES studies have demonstrated the contribution of de novo loss-of-function single-nucleotide variants (SNVs to autism spectrum disorder (ASD. However, challenges in the reliable detection of de novo insertions and deletions (indels have limited inclusion of these variants in prior analyses. By applying a robust indel detection method to WES data from 787 ASD families (2,963 individuals, we demonstrate that de novo frameshift indels contribute to ASD risk (OR = 1.6; 95% CI = 1.0–2.7; p = 0.03, are more common in female probands (p = 0.02, are enriched among genes encoding FMRP targets (p = 6 × 10−9, and arise predominantly on the paternal chromosome (p < 0.001. On the basis of mutation rates in probands versus unaffected siblings, we conclude that de novo frameshift indels contribute to risk in approximately 3% of individuals with ASD. Finally, by observing clustering of mutations in unrelated probands, we uncover two ASD-associated genes: KMT2E (MLL5, a chromatin regulator, and RIMS1, a regulator of synaptic vesicle release. : Insertions and deletions (indels have proven especially difficult to detect in exome sequencing data. Dong et al. now identify indels in exome data for 787 autism spectrum disorder (ASD families. They demonstrate association between de novo indels that alter the reading frame and ASD. Furthermore, by observing clustering of indels in unrelated probands, they uncover two additional ASD-associated genes: KMT2E (MLL5, a chromatin regulator, and RIMS1, a regulator of synaptic vesicle release.

  16. De novo synthesis of adenine nucleotides in different skeletal muscle fiber types

    Tullson, P.C.; John-Alder, H.B.; Hood, D.A.; Terjung, R.L.

    1988-01-01

    Management of adenine nucleotide catabolism differs among skeletal muscle fiber types. This study evaluated whether there are corresponding differences in the rates of de novo synthesis of adenine nucleotide among fiber type sections of skeletal muscle using an isolated perfused rat hindquarter preparation. Label incorporation into adenine nucleotides from the [1-14C]glycine precursor was determined and used to calculate synthesis rates based on the intracellular glycine specific radioactivity. Results show that intracellular glycine is closely related to the direct precursor pool. Rates of de novo synthesis were highest in fast-twitch red muscle (57.0 +/- 4.0, 58.2 +/- 4.4 nmol.h-1.g-1; deep red gastrocnemius and vastus lateralis), relatively high in slow-twitch red muscle (47.0 +/- 3.1; soleus), and low in fast-twitch white muscle (26.1 +/- 2.0 and 21.6 +/- 2.3; superficial white gastrocnemius and vastus lateralis). Rates for four mixed muscles were intermediate, ranging between 32.3 and 37.3. Specific de novo synthesis rates exhibited a strong correlation (r = 0.986) with muscle section citrate synthase activity. Turnover rates (de novo synthesis rate/adenine nucleotide pool size) were highest in high oxidative muscle (0.82-1.06%/h), lowest in low oxidative muscle (0.30-0.35%/h), and intermediate in mixed muscle (0.44-0.55%/h). Our results demonstrate that differences in adenine nucleotide management among fiber types extends to the process of de novo adenine nucleotide synthesis

  17. Efficient assembly of de novo human artificial chromosomes from large genomic loci

    Stromberg Gregory

    2005-07-01

    Full Text Available Abstract Background Human Artificial Chromosomes (HACs are potentially useful vectors for gene transfer studies and for functional annotation of the genome because of their suitability for cloning, manipulating and transferring large segments of the genome. However, development of HACs for the transfer of large genomic loci into mammalian cells has been limited by difficulties in manipulating high-molecular weight DNA, as well as by the low overall frequencies of de novo HAC formation. Indeed, to date, only a small number of large (>100 kb genomic loci have been reported to be successfully packaged into de novo HACs. Results We have developed novel methodologies to enable efficient assembly of HAC vectors containing any genomic locus of interest. We report here the creation of a novel, bimolecular system based on bacterial artificial chromosomes (BACs for the construction of HACs incorporating any defined genomic region. We have utilized this vector system to rapidly design, construct and validate multiple de novo HACs containing large (100–200 kb genomic loci including therapeutically significant genes for human growth hormone (HGH, polycystic kidney disease (PKD1 and ß-globin. We report significant differences in the ability of different genomic loci to support de novo HAC formation, suggesting possible effects of cis-acting genomic elements. Finally, as a proof of principle, we have observed sustained ß-globin gene expression from HACs incorporating the entire 200 kb ß-globin genomic locus for over 90 days in the absence of selection. Conclusion Taken together, these results are significant for the development of HAC vector technology, as they enable high-throughput assembly and functional validation of HACs containing any large genomic locus. We have evaluated the impact of different genomic loci on the frequency of HAC formation and identified segments of genomic DNA that appear to facilitate de novo HAC formation. These genomic loci

  18. De novo triiodothyronine formation from thyrocytes activated by thyroid-stimulating hormone.

    Citterio, Cintia E; Veluswamy, Balaji; Morgan, Sarah J; Galton, Valerie A; Banga, J Paul; Atkins, Stephen; Morishita, Yoshiaki; Neumann, Susanne; Latif, Rauf; Gershengorn, Marvin C; Smith, Terry J; Arvan, Peter

    2017-09-15

    The thyroid gland secretes primarily tetraiodothyronine (T 4 ), and some triiodothyronine (T 3 ). Under normal physiological circumstances, only one-fifth of circulating T 3 is directly released by the thyroid, but in states of hyperactivation of thyroid-stimulating hormone receptors (TSHRs), patients develop a syndrome of relative T 3 toxicosis. Thyroidal T 4 production results from iodination of thyroglobulin (TG) at residues Tyr 5 and Tyr 130 , whereas thyroidal T 3 production may originate in several different ways. In this study, the data demonstrate that within the carboxyl-terminal portion of mouse TG, T 3 is formed de novo independently of deiodination from T 4 We found that upon iodination in vitro , de novo T 3 formation in TG was decreased in mice lacking TSHRs. Conversely, de novo T 3 that can be formed upon iodination of TG secreted from PCCL3 (rat thyrocyte) cells was augmented from cells previously exposed to increased TSH, a TSHR agonist, a cAMP analog, or a TSHR-stimulating antibody. We present data suggesting that TSH-stimulated TG phosphorylation contributes to enhanced de novo T 3 formation. These effects were reversed within a few days after removal of the hyperstimulating conditions. Indeed, direct exposure of PCCL3 cells to human serum from two patients with Graves' disease, but not control sera, led to secretion of TG with an increased intrinsic ability to form T 3 upon in vitro iodination. Furthermore, TG secreted from human thyrocyte cultures hyperstimulated with TSH also showed an increased intrinsic ability to form T 3 Our data support the hypothesis that TG processing in the secretory pathway of TSHR-hyperstimulated thyrocytes alters the structure of the iodination substrate in a way that enhances de novo T 3 formation, contributing to the relative T 3 toxicosis of Graves' disease.

  19. Automated de novo phasing and model building of coiled-coil proteins.

    Rämisch, Sebastian; Lizatović, Robert; André, Ingemar

    2015-03-01

    Models generated by de novo structure prediction can be very useful starting points for molecular replacement for systems where suitable structural homologues cannot be readily identified. Protein-protein complexes and de novo-designed proteins are examples of systems that can be challenging to phase. In this study, the potential of de novo models of protein complexes for use as starting points for molecular replacement is investigated. The approach is demonstrated using homomeric coiled-coil proteins, which are excellent model systems for oligomeric systems. Despite the stereotypical fold of coiled coils, initial phase estimation can be difficult and many structures have to be solved with experimental phasing. A method was developed for automatic structure determination of homomeric coiled coils from X-ray diffraction data. In a benchmark set of 24 coiled coils, ranging from dimers to pentamers with resolutions down to 2.5 Å, 22 systems were automatically solved, 11 of which had previously been solved by experimental phasing. The generated models contained 71-103% of the residues present in the deposited structures, had the correct sequence and had free R values that deviated on average by 0.01 from those of the respective reference structures. The electron-density maps were of sufficient quality that only minor manual editing was necessary to produce final structures. The method, named CCsolve, combines methods for de novo structure prediction, initial phase estimation and automated model building into one pipeline. CCsolve is robust against errors in the initial models and can readily be modified to make use of alternative crystallographic software. The results demonstrate the feasibility of de novo phasing of protein-protein complexes, an approach that could also be employed for other small systems beyond coiled coils.

  20. Genome sequencing of bacteria: sequencing, de novo assembly and rapid analysis using open source tools.

    Kisand, Veljo; Lettieri, Teresa

    2013-04-01

    De novo genome sequencing of previously uncharacterized microorganisms has the potential to open up new frontiers in microbial genomics by providing insight into both functional capabilities and biodiversity. Until recently, Roche 454 pyrosequencing was the NGS method of choice for de novo assembly because it generates hundreds of thousands of long reads (tools for processing NGS data are increasingly free and open source and are often adopted for both their high quality and role in promoting academic freedom. The error rate of pyrosequencing the Alcanivorax borkumensis genome was such that thousands of insertions and deletions were artificially introduced into the finished genome. Despite a high coverage (~30 fold), it did not allow the reference genome to be fully mapped. Reads from regions with errors had low quality, low coverage, or were missing. The main defect of the reference mapping was the introduction of artificial indels into contigs through lower than 100% consensus and distracting gene calling due to artificial stop codons. No assembler was able to perform de novo assembly comparable to reference mapping. Automated annotation tools performed similarly on reference mapped and de novo draft genomes, and annotated most CDSs in the de novo assembled draft genomes. Free and open source software (FOSS) tools for assembly and annotation of NGS data are being developed rapidly to provide accurate results with less computational effort. Usability is not high priority and these tools currently do not allow the data to be processed without manual intervention. Despite this, genome assemblers now readily assemble medium short reads into long contigs (>97-98% genome coverage). A notable gap in pyrosequencing technology is the quality of base pair calling and conflicting base pairs between single reads at the same nucleotide position. Regardless, using draft whole genomes that are not finished and remain fragmented into tens of contigs allows one to characterize

  1. Crescimento de Hymenaea courbaril L. var. stilbocarpa (Hayne Lee et Lang. e Enterolobium contortisiliquum (Vell. Morong (Leguminosae sob diferentes níveis de sombreamento Growth of Hymenaea courbaril L. var. stilbocarpa (Hayne Lee et Lang. e Enterolobium contortisiliquum (Vell. Morong (Leguminosae under different shading levels

    Ana Lúcia da Silva Lima

    2010-03-01

    Full Text Available Hymenaea courbaril L. var. stilbocarpa (Hayne Lee et Lang. é uma espécie clímax tolerante a sombra, ao passo que Enterolobium contortisiliquum (Vell. Morong. é uma espécie pioneira. O desenvolvimento destas espécies pode refletir a habilidade de adaptação aos diferentes fatores ambientais (luz, água e temperatura no local em que estão crescendo. O suprimento inadequado de um desses fatores pode reduzir o vigor da planta e limitar seu desenvolvimento. O presente trabalho teve como objetivo avaliar os efeitos do nível de sombreamento no crescimento e a concentração de pigmentos fotossintéticos em duas espécies de leguminosas arbóreas, Hymenaea courbaril L. var. stilbocarpa (Hayne Lee et Lang. e Enterolobium contortisiliquum (Vell. Morong. O experimento foi conduzido no Setor de Olericultura do Centro Universitário Luterano de Ji-Paraná (CEULJI/ULBRA/Rondônia. Durante a formação das mudas, ambas as espécies foram expostas a quatro tratamentos de sombra: 0 % (controle - sol pleno; 30 %; 50 % e 80 %. Cada tratamento foi constituído com três repetições de cada espécie; o delineamento experimental foi inteiramente casualisado. Quatro meses após a semeadura, as seguintes análises foram realizadas: número de folhas, altura da planta, comprimento do sistema radicular, massa seca total e concentração de pigmentos fotossintéticos. O tratamento sob sol pleno afetou negativamente o crescimento de ambas as espécies. As mudas crescidas sob 50% e 80% apresentaram melhor desenvolvimento. Conforme o aumento do sombreamento houve um decréscimo na razão clorofila a/b e um aumento nas concentrações de clorofila total e carotenóides totais.Hymenaea courbaril L. var. stilbocarpa (Hayne Lee et Lang. is a clímax shadow tolerant specie and Enterolobium contortisiliquum (Vell. Morong., by the other hand, is considered as a pioneer specie. The development of these species may reflect its adaptation ability to different environmental

  2. Transferência do fator caturra para o cultivar Mundo Novo de Coffea arabica Transfer of the CT gene to Mundo Novo cultivar

    A. Carvalho

    1972-01-01

    Full Text Available No presente trabalho são relatados os estudos realizados visando à introdução do gene Ct (caturra que contribui para reduzir a altura da planta, no cultivar Mundo" Novo de Coffea arabica.Estudaram-se, em ensaios de produtividade, as populações Fv F.,, F3 e F4. Nessas populações e principalmente entre os descendentes dos "caféeiros H 2077-2-5 e H 2077-2-12, foram selecionadas plantas homozigotas para os alelos Ct e também para os alelos responsáveis pela cor do fruto xc ou Xc. Essas combinações foram denominadas 'Catuaí Amarelo' e 'Catuaí Vermelho', respectivamente, e suas características são apresentadas. Os novos cultivares vêm-se mostrando de interesse econômico para as regiões cafeeiras não somente pelo porte pequeno, mas também pela produtividade, pelo vigor vegetativo e pela precocidade.The successful transfer of the Ct gene for short internode to the tall cultivar of Coffea arábica'Mundo Novo' is reported. Individual selections were carried out in the F1, F2, F3 and F4 generations. It was found that early selection in the F2 generation was quite effective. A remarkably good correlation was found between productitivity of F2 plants and the yield of the F3 and F4 generations. Plants of the F4 generation have shown reasonable uniformity and high yield in several trials. The new selections showed to be early producers. Two new cultivars were released namely 'Catuaí Amarelo' and 'Catuaí Vermelho'. The former has yellow fruits whereas the latter has red fruits. The plants are much shorter that the ones of Mundo Novo. The new cultivars have a very strong secondary and tertiary branching. Because of these characteristics Catuaí Amarelo and Catuaí Vermelho are being planted in large scale replacing the tall cultivars.

  3. De novo mutations in the genome organizer CTCF cause intellectual disability

    Gregor, Anne; Oti, Martin; Kouwenhoven, Evelyn N

    2013-01-01

    An increasing number of genes involved in chromatin structure and epigenetic regulation has been implicated in a variety of developmental disorders, often including intellectual disability. By trio exome sequencing and subsequent mutational screening we now identified two de novo frameshift...... mutations and one de novo missense mutation in CTCF in individuals with intellectual disability, microcephaly, and growth retardation. Furthermore, an individual with a larger deletion including CTCF was identified. CTCF (CCCTC-binding factor) is one of the most important chromatin organizers in vertebrates...... and is involved in various chromatin regulation processes such as higher order of chromatin organization, enhancer function, and maintenance of three-dimensional chromatin structure. Transcriptome analyses in all three individuals with point mutations revealed deregulation of genes involved in signal transduction...

  4. Whole-Genome de novo Sequencing Of Quail And Grey Partridge

    Holm, Lars-Erik; Panitz, Frank; Burt, Dave

    2011-01-01

    The development in sequencing methods has made it possible to perform whole genome de novo sequencing of species without large commercial interests. Within the EU-financed QUANTOMICS project (KBBE-2A-222664), we have performed de novo sequencing of quail (Coturnix coturnix) and grey partridge...... (Perdix perdix) on a Genome Analyzer GAII (Illumina) using paired-end sequencing. The amount of generated sequences amounts to 8 to 9 Gb for each species. The analysis and assembly of the generated sequences is ongoing. Access to the whole genome sequence from these two species will enable enhanced...... comparative studies towards the chicken genome and will aid in identifying evolutionarily conserved sequences within the Galliformes. The obtained sequences from quail and partridge represent a beginning of generating the whole genome sequence for these species. The continuation of establishing the genome...

  5. NxRepair: error correction in de novo sequence assembly using Nextera mate pairs

    Rebecca R. Murphy

    2015-06-01

    Full Text Available Scaffolding errors and incorrect repeat disambiguation during de novo assembly can result in large scale misassemblies in draft genomes. Nextera mate pair sequencing data provide additional information to resolve assembly ambiguities during scaffolding. Here, we introduce NxRepair, an open source toolkit for error correction in de novo assemblies that uses Nextera mate pair libraries to identify and correct large-scale errors. We show that NxRepair can identify and correct large scaffolding errors, without use of a reference sequence, resulting in quantitative improvements in the assembly quality. NxRepair can be downloaded from GitHub or PyPI, the Python Package Index; a tutorial and user documentation are also available.

  6. Trans-10, cis-12 conjugated linoleic acid decreases de novo lipid synthesis in human adipocytes

    Obsen, Thomas; Faergeman, Nils J; Chung, Soonkyu

    2012-01-01

    7-12 h, respectively. The mRNA levels of liver X receptor (LXR)α and sterol regulatory element binding protein (SREBP)-1c, transcription factors that regulate SCD-1, were decreased by 10,12 CLA within 5 h. These data suggest that the isomer-specific decrease in de novo lipid synthesis by 10,12 CLA......]-oleic or [(14)C]-linoleic acids. When using [(14)C]-acetic acid and [(14)C]-pyruvic acid as substrates, 30 μM 10,12 CLA, but not 9,11 CLA, decreased de novo synthesis of triglyceride, free FA, diacylglycerol, cholesterol esters, cardiolipin, phospholipids and ceramides within 3-24 h. Treatment with 30 μM 10...... is due, in part, to the rapid repression of lipogenic transcription factors that regulate MUFA synthesis, suggesting an anti-obesity mechanism unique to this trans FA....

  7. Integrative Analyses of De Novo Mutations Provide Deeper Biological Insights into Autism Spectrum Disorder

    Atsushi Takata

    2018-01-01

    Full Text Available Recent studies have established important roles of de novo mutations (DNMs in autism spectrum disorders (ASDs. Here, we analyze DNMs in 262 ASD probands of Japanese origin and confirm the “de novo paradigm” of ASDs across ethnicities. Based on this consistency, we combine the lists of damaging DNMs in our and published ASD cohorts (total number of trios, 4,244 and perform integrative bioinformatics analyses. Besides replicating the findings of previous studies, our analyses highlight ATP-binding genes and fetal cerebellar/striatal circuits. Analysis of individual genes identified 61 genes enriched for damaging DNMs, including ten genes for which our dataset now contributes to statistical significance. Screening of compounds altering the expression of genes hit by damaging DNMs reveals a global downregulating effect of valproic acid, a known risk factor for ASDs, whereas cardiac glycosides upregulate these genes. Collectively, our integrative approach provides deeper biological and potential medical insights into ASDs.

  8. Alternative normalization methods demonstrate widespread cortical hypometabolism in untreated de novo Parkinson's disease

    Berti, Valentina; Polito, C; Borghammer, Per

    2012-01-01

    , recent studies suggested that conventional data normalization procedures may not always be valid, and demonstrated that alternative normalization strategies better allow detection of low magnitude changes. We hypothesized that these alternative normalization procedures would disclose more widespread...... metabolic alterations in de novo PD. METHODS: [18F]FDG PET scans of 26 untreated de novo PD patients (Hoehn & Yahr stage I-II) and 21 age-matched controls were compared using voxel-based analysis. Normalization was performed using gray matter (GM), white matter (WM) reference regions and Yakushev...... normalization. RESULTS: Compared to GM normalization, WM and Yakushev normalization procedures disclosed much larger cortical regions of relative hypometabolism in the PD group with extensive involvement of frontal and parieto-temporal-occipital cortices, and several subcortical structures. Furthermore...

  9. A de novo missense mutation of FGFR2 causes facial dysplasia syndrome in Holstein cattle

    Agerholm, Jørgen Steen; McEvoy, Fintan; Heegaard, Steffen

    2017-01-01

    was suspected as all recorded cases were progeny of the same sire. Detailed investigations were performed to characterize the syndrome and to reveal its cause. Results Seven malformed calves were submitted examination. All cases shared a common morphology with the most striking lesions being severe facial...... chromosome 26 where whole genome sequencing of a case-parent trio revealed two de novo variants perfectly associated with the disease: an intronic SNP in the DMBT1 gene and a single non-synonymous variant in the FGFR2 gene. This FGFR2 missense variant (c.927G>T) affects a gene encoding a member...... of the fibroblast growth factor receptor family, where amino acid sequence is highly conserved between members and across species. It is predicted to change an evolutionary conserved tryptophan into a cysteine residue (p.Trp309Cys). Both variant alleles were proven to result from de novo mutation events...

  10. A rare case of de novo gigantic ovarian abscess within an endometrioma.

    Hameed, Aisha; Mehta, Vaishali; Sinha, Prabha

    2010-06-01

    We are reporting a rare case of de novo ovarian abscess in an endometrioma. Ovarian abscess within an endometrioma is a rare gynecological problem, but de novo abscess in the endometrioma is even rarer. Most of the ovarian abscesses develop in the endometriomas following interventions, e.g., aspiration, pelvic surgery, and oocyte retrieval. We are presenting a case of a spontaneous giant abscess in a large ovarian cyst in a nulliparous woman who presented with acute abdomen. Patient was treated in a district general hospital with multidisciplinary approach. Thirteen liters of the pus were drained. She has had a sub total (supra cervical) hysterectomy and bilateral salpingo-oophorectomy (BSO) performed. Histology of the abscess wall confirmed endometriotic nature of the cyst. Patient made an uneventful recovery and was discharged home on the 14th postoperative day. This case highlights that endometrioma and its complication can present as a surgical emergency and should be dealt as one.

  11. Estoque de serapilheira e fertilidade do solo em pastagem degradada de Brachiaria decumbens após implantação de leguminosas arbustivas e arbóreas forrageiras Soil litter stock and fertility after planting leguminous shrubs and forage trees on degraded signal grass pasture

    André Barbosa Silva

    2013-04-01

    Full Text Available As pastagens formam a base da pecuária brasileira; essas sofrem degradação em larga escala por deficiência de nitrogênio (N. O consórcio com leguminosas, além de fixar N, pode apresentar outros efeitos na fertilidade do solo como acidificação ou retirada de nutrientes de camadas mais profundas para as mais superficiais. Este trabalho objetivou avaliar o estoque de serapilheira e a fertilidade do solo em pastagens degradadas de braquiária (Brachiaria decumbens, após implantar leguminosas arbustivas e arbóreas forrageiras. Para isso, uma amostragem foi realizada em março de 2010 em um experimento no campo, introduzindo pastagem degradada de Brachiaria decumbens, em julho de 2008, com sabiá (Mimosa caesalpiniifolia, leucena (Leucaena leucocephala, mororó (Bauhinia cheilantha e gliricídia (Gliricidia sepium, além de braquiária adubada e não adubada com N. As amostras de solo e serapilheira foram coletadas aos 0-10, 10-20 e 20-40 cm de profundidade, em três transectos, alternando pontos cobertos por gramíneas e leguminosas, totalizando sete amostras compostas por parcela para determinar pH, P, K, Ca, Mg e Al no solo, enquanto SB, t e m foram calculados. A serapilheira foi separada visualmente em leguminosas, gramíneas e materiais não identificados, em que foram utilizados para quantificação de matéria seca, matéria orgânica, N, P, C, fibra detergente ácido e lignina. A introdução das leguminosas aumentou os teores de N total na serapilheira e reduziu as relações C:N, com destaque para gliricídia e sabiá; entretanto, essa última apresentou elevados teores de lignina. Houve efeito significativo da cobertura por leguminosas, sem diferenças entre essas, para pH e K, na profundidade de 0-10 cm, e para Al e m, aos 10-20 cm de profundidade.Pastures are the fodder supply of Brazilian livestock, and are exhaustively degraded by nitrogen (N deficiency. Intercropping with legumes, aside from nitrogen fixation, may have

  12. The significance of trilineage myelodysplasia in de novo acute myeloblastic leukemia: Clinical and laboratory features

    Lima, CSP; Vassalo, J; LorandMetze, I; Bechelli, APP; Souza, CA

    1997-01-01

    A prospective study was undertaken to elucidate the clinical and laboratory differences between tie novo acute myeloid leukemia (AML) and AML with trilineage myelodysplasia (AML-TMDS). One hundred and seven patients with AML were diagnosed at the University Hospital between January 1987 and July 1992, and were followed until July 1995. TMDS was identified in 17 of them (16%). With regard to age and sex distribution no difference was found between AML patients with and without TMDS (p = 0.43, ...

  13. Perinatal Autopsy Findings in a Case of De Novo Hypohidrotic Ectodermal Dysplasia.

    Chikkannaiah, Panduranga; Nagaraju, Smitha; Kangle, Rajit; Gosavi, Mansi

    2015-01-01

    Ectodermal dysplasia are group of inherited disorders involving the developmental defects of ectodermal structures like hair, teeth, nails, sweat glands, and others. X-linked recessive inheritance is most common. Here we describe perinatal autopsy findings in a case of de novo ectodermal dysplasia in a female fetus. To the best of our knowledge, this is the first fetal autopsy description in a case of ectodermal dysplasia.

  14. Demonstration of de novo synthesis of enzymes by density labelling with stable isotopes

    Huebner, G.; Hirschberg, K.

    1977-01-01

    The technique of in vivo density labelling of proteins with H 2 18 O and 2 H 2 O has been used to investigate hormonal regulation and developmental expression of enzymes in plant cells. Buoyant density data obtained from isopycnic equilibrium centrifugation demonstrated that the cytokinine-induced nitrate reductase activity and the gibberellic acid-induced phosphatase activity in isolated embryos of Agrostemma githago are activities of enzymes synthesized de novo. The increase in alanine-specific aminopeptidase in germinating A. githago seeds is not due to de novo synthesis but to the release of preformed enzyme. On the basis of this result it is possible to apply the enzyme aminopeptidase as an internal density standard in equilibrium centrifugation. Density labelling experiments on proteins in pea cotyledons have been used to study the change in the activity of acid phosphatase, alanine-specific aminopeptidase, and peroxidase during germination. The activities of these enzymes increase in cotyledons of Pisum sativum. Density labelling by 18 O and 2 H demonstrates de novo synthesis of these three enzymes. The differential time course of enzyme induction shows the advantage of using H 2 18 O as labelling substance in cases when the enzyme was synthesized immediately at the beginning of germination. At this stage of development the amino-acid pool available for synthesis is formed principally by means of hydrolysis of storage proteins. The incorporation of 2 H into the new proteins takes place in a measurable amount at a stage of growth in which the amino acids are also synthesized de novo. The enzyme acid phosphatase of pea cotyledons was chosen to demonstrate the possibility of using the density labelling technique to detect protein turnover. (author)

  15. Optimizing de novo common wheat transcriptome assembly using short-read RNA-Seq data

    Duan Jialei

    2012-08-01

    Full Text Available Abstract Background Rapid advances in next-generation sequencing methods have provided new opportunities for transcriptome sequencing (RNA-Seq. The unprecedented sequencing depth provided by RNA-Seq makes it a powerful and cost-efficient method for transcriptome study, and it has been widely used in model organisms and non-model organisms to identify and quantify RNA. For non-model organisms lacking well-defined genomes, de novo assembly is typically required for downstream RNA-Seq analyses, including SNP discovery and identification of genes differentially expressed by phenotypes. Although RNA-Seq has been successfully used to sequence many non-model organisms, the results of de novo assembly from short reads can still be improved by using recent bioinformatic developments. Results In this study, we used 212.6 million pair-end reads, which accounted for 16.2 Gb, to assemble the hexaploid wheat transcriptome. Two state-of-the-art assemblers, Trinity and Trans-ABySS, which use the single and multiple k-mer methods, respectively, were used, and the whole de novo assembly process was divided into the following four steps: pre-assembly, merging different samples, removal of redundancy and scaffolding. We documented every detail of these steps and how these steps influenced assembly performance to gain insight into transcriptome assembly from short reads. After optimization, the assembled transcripts were comparable to Sanger-derived ESTs in terms of both continuity and accuracy. We also provided considerable new wheat transcript data to the community. Conclusions It is feasible to assemble the hexaploid wheat transcriptome from short reads. Special attention should be paid to dealing with multiple samples to balance the spectrum of expression levels and redundancy. To obtain an accurate overview of RNA profiling, removal of redundancy may be crucial in de novo assembly.

  16. Primary intraosseous squamous cell carcinoma of the mandible arising de novo.

    Shamim, Thorakkal

    2009-07-01

    Primary intraosseous squamous cell carcinoma is an odontogenic tumour with aggressive behaviour usually noticed in 6th to 7th decades of life. The tumour is characterized by progressive swelling of the jaw, pain and loosening of teeth. Microscopically, the lesion is showing foci of keratinising cells separated by collagenous connective tissue stroma. A case of primary intraosseous squamous cell carcinoma of mandible arising de novo in a 40-year-old man is reported.

  17. De novo and salvage pathway precursor incorporation during DNA replication at the nuclear matrix

    Panzeter, P.L.

    1988-01-01

    Total nuclear DNA can be empirically subdivided into low salt-soluble (LS) DNA (75-80%), high salt-soluble (HS) DNA (18-23%), and nuclear matrix-associated (NM) DNA which remains tightly bound to the nuclear matrix (∼2%). The most-newly replicated DNA is that associated with the nuclear matrix in regenerating rat liver. Analyses of the DNA fractions after various pulse times revealed that the salvage and de novo pathway DNA precursors investigated were incorporated preferentially into NM-DNA at early pulse times, after which the radioactivity became progressively incorporated into HS- and LS-DNA, respectively. These results support two models of nuclear matrix-associated DNA replication, proposed previously, and a third model presented in this dissertation. In addition, the incorporation of de novo pathway precursors lagged significantly (> 10 minutes) behind the incorporation of precursors entering through the salvage pathway. Channeling of salvage pathway precursors to DNA replication sites would explain the more rapid uptake of salvage precursors into NM-DNA than de novo precursors. To investigate the possibility of this heretofore in vitro phenomenon, the incorporation of the salvage precursor, ( 3 H)deoxythymidine, and the de novo precursor, ( 14 C)orotic acid, into NM-DNA and dTTP was examined in regenerating rat liver. There was no significant difference between the incorporation pattern of ( 14 C)orotic acid into NM-DNA thymine and that of ( 14 C)orotic acid into soluble dTTP. Contrastingly, the salvage pathway precursor, ( 3 H)deoxythymidine, labeled NM-DNA before labeling the dTTP pool

  18. De novo complex intra chromosomal rearrangement after ICSI: characterisation by BACs micro array-CGH

    Quimsiyeh Mazin

    2008-12-01

    Full Text Available Abstract Background In routine Assisted Reproductive Technology (ART men with severe oligozoospermia or azoospermia should be informed about the risk of de novo congenital or chromosomal abnormalities in ICSI program. Also the benefits of preimplantation or prenatal genetic diagnosis practice need to be explained to the couple. Methods From a routine ICSI attempt, using ejaculated sperm from male with severe oligozoospermia and having normal karyotype, a 30 years old pregnant woman was referred to prenatal diagnosis in the 17th week for bichorionic biamniotic twin gestation. Amniocentesis was performed because of the detection of an increased foetal nuchal translucency for one of the fetus by the sonographic examination during the 12th week of gestation (WG. Chromosome and DNA studies of the fetus were realized on cultured amniocytes Results Conventional, molecular cytogenetic and microarray CGH experiments allowed us to conclude that the fetus had a de novo pericentromeric inversion associated with a duplication of the 9p22.1-p24 chromosomal region, 46,XY,invdup(9(p22.1p24 [arrCGH 9p22.1p24 (RP11-130C19 → RP11-87O1x3]. As containing the critical 9p22 region, our case is in coincidence with the general phenotype features of the partial trisomy 9p syndrome with major growth retardation, microcephaly and microretrognathia. Conclusion This de novo complex chromosome rearrangement illustrates the possible risk of chromosome or gene defects in ICSI program and the contribution of array-CGH for mapping rapidly de novo chromosomal imbalance.

  19. Uridine monophosphate synthetase enables eukaryotic de novo NAD+ biosynthesis from quinolinic acid.

    McReynolds, Melanie R; Wang, Wenqing; Holleran, Lauren M; Hanna-Rose, Wendy

    2017-07-07

    NAD + biosynthesis is an attractive and promising therapeutic target for influencing health span and obesity-related phenotypes as well as tumor growth. Full and effective use of this target for therapeutic benefit requires a complete understanding of NAD + biosynthetic pathways. Here, we report a previously unrecognized role for a conserved phosphoribosyltransferase in NAD + biosynthesis. Because a required quinolinic acid phosphoribosyltransferase (QPRTase) is not encoded in its genome, Caenorhabditis elegans are reported to lack a de novo NAD + biosynthetic pathway. However, all the genes of the kynurenine pathway required for quinolinic acid (QA) production from tryptophan are present. Thus, we investigated the presence of de novo NAD + biosynthesis in this organism. By combining isotope-tracing and genetic experiments, we have demonstrated the presence of an intact de novo biosynthesis pathway for NAD + from tryptophan via QA, highlighting the functional conservation of this important biosynthetic activity. Supplementation with kynurenine pathway intermediates also boosted NAD + levels and partially reversed NAD + -dependent phenotypes caused by mutation of pnc-1 , which encodes a nicotinamidase required for NAD + salvage biosynthesis, demonstrating contribution of de novo synthesis to NAD + homeostasis. By investigating candidate phosphoribosyltransferase genes in the genome, we determined that the conserved uridine monophosphate phosphoribosyltransferase (UMPS), which acts in pyrimidine biosynthesis, is required for NAD + biosynthesis in place of the missing QPRTase. We suggest that similar underground metabolic activity of UMPS may function in other organisms. This mechanism for NAD + biosynthesis creates novel possibilities for manipulating NAD + biosynthetic pathways, which is key for the future of therapeutics. © 2017 by The American Society for Biochemistry and Molecular Biology, Inc.

  20. Predicting survival of de novo metastatic breast cancer in Asian women: systematic review and validation study.

    Hui Miao

    Full Text Available BACKGROUND: In Asia, up to 25% of breast cancer patients present with distant metastases at diagnosis. Given the heterogeneous survival probabilities of de novo metastatic breast cancer, individual outcome prediction is challenging. The aim of the study is to identify existing prognostic models for patients with de novo metastatic breast cancer and validate them in Asia. MATERIALS AND METHODS: We performed a systematic review to identify prediction models for metastatic breast cancer. Models were validated in 642 women with de novo metastatic breast cancer registered between 2000 and 2010 in the Singapore Malaysia Hospital Based Breast Cancer Registry. Survival curves for low, intermediate and high-risk groups according to each prognostic score were compared by log-rank test and discrimination of the models was assessed by concordance statistic (C-statistic. RESULTS: We identified 16 prediction models, seven of which were for patients with brain metastases only. Performance status, estrogen receptor status, metastatic site(s and disease-free interval were the most common predictors. We were able to validate nine prediction models. The capacity of the models to discriminate between poor and good survivors varied from poor to fair with C-statistics ranging from 0.50 (95% CI, 0.48-0.53 to 0.63 (95% CI, 0.60-0.66. CONCLUSION: The discriminatory performance of existing prediction models for de novo metastatic breast cancer in Asia is modest. Development of an Asian-specific prediction model is needed to improve prognostication and guide decision making.

  1. De novo assembly of human genomes with massively parallel short read sequencing

    Li, Ruiqiang; Zhu, Hongmei; Ruan, Jue

    2010-01-01

    genomes from short read sequences. We successfully assembled both the Asian and African human genome sequences, achieving an N50 contig size of 7.4 and 5.9 kilobases (kb) and scaffold of 446.3 and 61.9 kb, respectively. The development of this de novo short read assembly method creates new opportunities...... for building reference sequences and carrying out accurate analyses of unexplored genomes in a cost-effective way....

  2. JTP-103237, a monoacylglycerol acyltransferase inhibitor, prevents fatty liver and suppresses both triglyceride synthesis and de novo lipogenesis

    Chihiro Okuma

    2015-07-01

    Conclusion: In the present study, JTP-103237 prevented carbohydrate-induced fatty liver and suppressed both TG synthesis and de novo lipogenesis, suggesting MGAT inhibitor may prevent carbohydrate-induced metabolic disorders, including NAFLD, obesity and diabetes.

  3. Axonal regeneration and development of de novo axons from distal dendrites of adult feline commissural interneurons after a proximal axotomy

    Fenrich, Keith K; Skelton, Nicole; MacDermid, Victoria E

    2007-01-01

    Following proximal axotomy, several types of neurons sprout de novo axons from distal dendrites. These processes may represent a means of forming new circuits following spinal cord injury. However, it is not know whether mammalian spinal interneurons, axotomized as a result of a spinal cord injury......, develop de novo axons. Our goal was to determine whether spinal commissural interneurons (CINs), axotomized by 3-4-mm midsagittal transection at C3, form de novo axons from distal dendrites. All experiments were performed on adult cats. CINs in C3 were stained with extracellular injections of Neurobiotin...... at 4-5 weeks post injury. The somata of axotomized CINs were identified by the presence of immunoreactivity for the axonal growth-associated protein-43 (GAP-43). Nearly half of the CINs had de novo axons that emerged from distal dendrites. These axons lacked immunoreactivity for the dendritic protein...

  4. Building a Better Fragment Library for De Novo Protein Structure Prediction

    de Oliveira, Saulo H. P.; Shi, Jiye; Deane, Charlotte M.

    2015-01-01

    Fragment-based approaches are the current standard for de novo protein structure prediction. These approaches rely on accurate and reliable fragment libraries to generate good structural models. In this work, we describe a novel method for structure fragment library generation and its application in fragment-based de novo protein structure prediction. The importance of correct testing procedures in assessing the quality of fragment libraries is demonstrated. In particular, the exclusion of homologs to the target from the libraries to correctly simulate a de novo protein structure prediction scenario, something which surprisingly is not always done. We demonstrate that fragments presenting different predominant predicted secondary structures should be treated differently during the fragment library generation step and that exhaustive and random search strategies should both be used. This information was used to develop a novel method, Flib. On a validation set of 41 structurally diverse proteins, Flib libraries presents both a higher precision and coverage than two of the state-of-the-art methods, NNMake and HHFrag. Flib also achieves better precision and coverage on the set of 275 protein domains used in the two previous experiments of the the Critical Assessment of Structure Prediction (CASP9 and CASP10). We compared Flib libraries against NNMake libraries in a structure prediction context. Of the 13 cases in which a correct answer was generated, Flib models were more accurate than NNMake models for 10. “Flib is available for download at: http://www.stats.ox.ac.uk/research/proteins/resources”. PMID:25901595

  5. De novo assembly of plant body plan: a step ahead of Deadpool.

    Kareem, Abdul; Radhakrishnan, Dhanya; Sondhi, Yash; Aiyaz, Mohammed; Roy, Merin V; Sugimoto, Kaoru; Prasad, Kalika

    2016-08-01

    While in the movie Deadpool it is possible for a human to recreate an arm from scratch, in reality plants can even surpass that. Not only can they regenerate lost parts, but also the whole plant body can be reborn from a few existing cells. Despite the decades old realization that plant cells possess the ability to regenerate a complete shoot and root system, it is only now that the underlying mechanisms are being unraveled. De novo plant regeneration involves the initiation of regenerative mass, acquisition of the pluripotent state, reconstitution of stem cells and assembly of regulatory interactions. Recent studies have furthered our understanding on the making of a complete plant system in the absence of embryonic positional cues. We review the recent studies probing the molecular mechanisms of de novo plant regeneration in response to external inductive cues and our current knowledge of direct reprogramming of root to shoot and vice versa. We further discuss how de novo regeneration can be exploited to meet the demands of green culture industries and to serve as a general model to address the fundamental questions of regeneration across the plant kingdom.

  6. A rice gene of de novo origin negatively regulates pathogen-induced defense response.

    Wenfei Xiao

    Full Text Available How defense genes originated with the evolution of their specific pathogen-responsive traits remains an important problem. It is generally known that a form of duplication can generate new genes, suggesting that a new gene usually evolves from an ancestral gene. However, we show that a new defense gene in plants may evolve by de novo origination, resulting in sophisticated disease-resistant functions in rice. Analyses of gene evolution showed that this new gene, OsDR10, had homologs only in the closest relative, Leersia genus, but not other subfamilies of the grass family; therefore, it is a rice tribe-specific gene that may have originated de novo in the tribe. We further show that this gene may evolve a highly conservative rice-specific function that contributes to the regulation difference between rice and other plant species in response to pathogen infections. Biologic analyses including gene silencing, pathologic analysis, and mutant characterization by transformation showed that the OsDR10-suppressed plants enhanced resistance to a broad spectrum of Xanthomonas oryzae pv. oryzae strains, which cause bacterial blight disease. This enhanced disease resistance was accompanied by increased accumulation of endogenous salicylic acid (SA and suppressed accumulation of endogenous jasmonic acid (JA as well as modified expression of a subset of defense-responsive genes functioning both upstream and downstream of SA and JA. These data and analyses provide fresh insights into the new biologic and evolutionary processes of a de novo gene recruited rapidly.

  7. De novo point mutations in patients diagnosed with ataxic cerebral palsy.

    Parolin Schnekenberg, Ricardo; Perkins, Emma M; Miller, Jack W; Davies, Wayne I L; D'Adamo, Maria Cristina; Pessia, Mauro; Fawcett, Katherine A; Sims, David; Gillard, Elodie; Hudspith, Karl; Skehel, Paul; Williams, Jonathan; O'Regan, Mary; Jayawant, Sandeep; Jefferson, Rosalind; Hughes, Sarah; Lustenberger, Andrea; Ragoussis, Jiannis; Jackson, Mandy; Tucker, Stephen J; Németh, Andrea H

    2015-07-01

    Cerebral palsy is a sporadic disorder with multiple likely aetiologies, but frequently considered to be caused by birth asphyxia. Genetic investigations are rarely performed in patients with cerebral palsy and there is little proven evidence of genetic causes. As part of a large project investigating children with ataxia, we identified four patients in our cohort with a diagnosis of ataxic cerebral palsy. They were investigated using either targeted next generation sequencing or trio-based exome sequencing and were found to have mutations in three different genes, KCNC3, ITPR1 and SPTBN2. All the mutations were de novo and associated with increased paternal age. The mutations were shown to be pathogenic using a combination of bioinformatics analysis and in vitro model systems. This work is the first to report that the ataxic subtype of cerebral palsy can be caused by de novo dominant point mutations, which explains the sporadic nature of these cases. We conclude that at least some subtypes of cerebral palsy may be caused by de novo genetic mutations and patients with a clinical diagnosis of cerebral palsy should be genetically investigated before causation is ascribed to perinatal asphyxia or other aetiologies. © The Author (2015). Published by Oxford University Press on behalf of the Guarantors of Brain.

  8. Norgal: extraction and de novo assembly of mitochondrial DNA from whole-genome sequencing data.

    Al-Nakeeb, Kosai; Petersen, Thomas Nordahl; Sicheritz-Pontén, Thomas

    2017-11-21

    Whole-genome sequencing (WGS) projects provide short read nucleotide sequences from nuclear and possibly organelle DNA depending on the source of origin. Mitochondrial DNA is present in animals and fungi, while plants contain DNA from both mitochondria and chloroplasts. Current techniques for separating organelle reads from nuclear reads in WGS data require full reference or partial seed sequences for assembling. Norgal (de Novo ORGAneLle extractor) avoids this requirement by identifying a high frequency subset of k-mers that are predominantly of mitochondrial origin and performing a de novo assembly on a subset of reads that contains these k-mers. The method was applied to WGS data from a panda, brown algae seaweed, butterfly and filamentous fungus. We were able to extract full circular mitochondrial genomes and obtained sequence identities to the reference sequences in the range from 98.5 to 99.5%. We also assembled the chloroplasts of grape vines and cucumbers using Norgal together with seed-based de novo assemblers. Norgal is a pipeline that can extract and assemble full or partial mitochondrial and chloroplast genomes from WGS short reads without prior knowledge. The program is available at: https://bitbucket.org/kosaidtu/norgal .

  9. Autism Spectrum Disorder in a Girl with a De Novo X;19 Balanced Translocation

    Baruffi, Marcelo Razera; de Souza, Deise Helena; Bicudo da Silva, Rosana Aparecida; Ramos, Ester Silveira; Moretti-Ferreira, Danilo

    2012-01-01

    Balanced X-autosome translocations are rare, and female carriers are a clinically heterogeneous group of patients, with phenotypically normal women, history of recurrent miscarriage, gonadal dysfunction, X-linked disorders or congenital abnormalities, and/or developmental delay. We investigated a patient with a de novo X;19 translocation. The six-year-old girl has been evaluated due to hyperactivity, social interaction impairment, stereotypic and repetitive use of language with echolalia, failure to follow parents/caretakers orders, inconsolable outbursts, and persistent preoccupation with parts of objects. The girl has normal cognitive function. Her measurements are within normal range, and no other abnormalities were found during physical, neurological, or dysmorphological examinations. Conventional cytogenetic analysis showed a de novo balanced translocation, with the karyotype 46,X,t(X;19)(p21.2;q13.4). Replication banding showed a clear preference for inactivation of the normal X chromosome. The translocation was confirmed by FISH and Spectral Karyotyping (SKY). Although abnormal phenotypes associated with de novo balanced chromosomal rearrangements may be the result of disruption of a gene at one of the breakpoints, submicroscopic deletion or duplication, or a position effect, X; autosomal translocations are associated with additional unique risk factors including X-linked disorders, functional autosomal monosomy, or functional X chromosome disomy resulting from the complex X-inactivation process. PMID:23074688

  10. Autism Spectrum Disorder in a Girl with a De Novo X;19 Balanced Translocation

    Marcelo Razera Baruffi

    2012-01-01

    Full Text Available Balanced X-autosome translocations are rare, and female carriers are a clinically heterogeneous group of patients, with phenotypically normal women, history of recurrent miscarriage, gonadal dysfunction, X-linked disorders or congenital abnormalities, and/or developmental delay. We investigated a patient with a de novo X;19 translocation. The six-year-old girl has been evaluated due to hyperactivity, social interaction impairment, stereotypic and repetitive use of language with echolalia, failure to follow parents/caretakers orders, inconsolable outbursts, and persistent preoccupation with parts of objects. The girl has normal cognitive function. Her measurements are within normal range, and no other abnormalities were found during physical, neurological, or dysmorphological examinations. Conventional cytogenetic analysis showed a de novo balanced translocation, with the karyotype 46,X,t(X;19(p21.2;q13.4. Replication banding showed a clear preference for inactivation of the normal X chromosome. The translocation was confirmed by FISH and Spectral Karyotyping (SKY. Although abnormal phenotypes associated with de novo balanced chromosomal rearrangements may be the result of disruption of a gene at one of the breakpoints, submicroscopic deletion or duplication, or a position effect, X; autosomal translocations are associated with additional unique risk factors including X-linked disorders, functional autosomal monosomy, or functional X chromosome disomy resulting from the complex X-inactivation process.

  11. Resveratrol induces growth inhibition and apoptosis in metastatic breast cancer cells via de novo ceramide signaling.

    Scarlatti, Francesca; Sala, Giusy; Somenzi, Giulia; Signorelli, Paola; Sacchi, Nicoletta; Ghidoni, Riccardo

    2003-12-01

    Resveratrol (3,4',5-trans-trihydroxystilbene), a phytoalexin present in grapes and red wine, is emerging as a natural compound with potential anticancer properties. Here we show that resveratrol can induce growth inhibition and apoptosis in MDA-MB-231, a highly invasive and metastatic breast cancer cell line, in concomitance with a dramatic endogenous increase of growth inhibitory/proapoptotic ceramide. We found that accumulation of ceramide derives from both de novo ceramide synthesis and sphingomyelin hydrolysis. More specifically we demonstrated that ceramide accumulation induced by resveratrol can be traced to the activation of serine palmitoyltransferase (SPT), the key enzyme of de novo ceramide biosynthetic pathway, and neutral sphingomyelinase (nSMase), a main enzyme involved in the sphingomyelin/ceramide pathway. However, by using specific inhibitors of SPT, myriocin and L-cycloserine, and nSMase, gluthatione and manumycin, we found that only the SPT inhibitors could counteract the biological effects induced by resveratrol. Thus, resveratrol seems to exert its growth inhibitory/apoptotic effect on the metastatic breast cancer cell line MDA-MB-231 by activating the de novo ceramide synthesis pathway.

  12. Building a better fragment library for de novo protein structure prediction.

    Saulo H P de Oliveira

    Full Text Available Fragment-based approaches are the current standard for de novo protein structure prediction. These approaches rely on accurate and reliable fragment libraries to generate good structural models. In this work, we describe a novel method for structure fragment library generation and its application in fragment-based de novo protein structure prediction. The importance of correct testing procedures in assessing the quality of fragment libraries is demonstrated. In particular, the exclusion of homologs to the target from the libraries to correctly simulate a de novo protein structure prediction scenario, something which surprisingly is not always done. We demonstrate that fragments presenting different predominant predicted secondary structures should be treated differently during the fragment library generation step and that exhaustive and random search strategies should both be used. This information was used to develop a novel method, Flib. On a validation set of 41 structurally diverse proteins, Flib libraries presents both a higher precision and coverage than two of the state-of-the-art methods, NNMake and HHFrag. Flib also achieves better precision and coverage on the set of 275 protein domains used in the two previous experiments of the the Critical Assessment of Structure Prediction (CASP9 and CASP10. We compared Flib libraries against NNMake libraries in a structure prediction context. Of the 13 cases in which a correct answer was generated, Flib models were more accurate than NNMake models for 10. "Flib is available for download at: http://www.stats.ox.ac.uk/research/proteins/resources".

  13. De novo and inherited private variants in MAP1B in periventricular nodular heterotopia.

    Heinzen, Erin L; O'Neill, Adam C; Zhu, Xiaolin; Allen, Andrew S; Bahlo, Melanie; Chelly, Jamel; Dobyns, William B; Freytag, Saskia; Guerrini, Renzo; Leventer, Richard J; Poduri, Annapurna; Robertson, Stephen P; Walsh, Christopher A; Zhang, Mengqi

    2018-05-08

    Periventricular nodular heterotopia (PVNH) is a malformation of cortical development commonly associated with epilepsy. We exome sequenced 202 individuals with sporadic PVNH to identify novel genetic risk loci. We first performed a trio-based analysis and identified 219 de novo variants. Although no novel genes were implicated in this initial analysis, PVNH cases were found overall to have a significant excess of nonsynonymous de novo variants in intolerant genes (p = 3.27x10-7), suggesting a role for rare new alleles in genes yet to be associated with the condition. Using a gene-level collapsing analysis comparing cases and controls, we identified a genome-wide significant signal driven by four ultra-rare loss-of-function heterozygous variants in MAP1B, including one de novo variant. In at least one instance, the MAP1B variant was inherited from a parent with previously undiagnosed PVNH. The PVNH was frontally predominant and associated with perisylvian polymicrogyria. These results implicate MAP1B in PVNH. More broadly, our findings suggest that detrimental mutations likely arising in immediately preceding generations with incomplete penetrance may also be responsible for some apparently sporadic diseases.

  14. De novo FGF12 mutation in 2 patients with neonatal-onset epilepsy

    Guella, Ilaria; Huh, Linda; McKenzie, Marna B.; Toyota, Eric B.; Bebin, E. Martina; Thompson, Michelle L.; Cooper, Gregory M.; Evans, Daniel M.; Buerki, Sarah E.; Adam, Shelin; Van Allen, Margot I.; Nelson, Tanya N.; Connolly, Mary B.; Farrer, Matthew J.

    2016-01-01

    Objective: We describe 2 additional patients with early-onset epilepsy with a de novo FGF12 mutation. Methods: Whole-exome sequencing was performed in 2 unrelated patients with early-onset epilepsy and their unaffected parents. Genetic variants were assessed by comparative trio analysis. Clinical evolution, EEG, and neuroimaging are described. The phenotype and response to treatment was reviewed and compared to affected siblings in the original report. Results: We identified the same FGF12 de novo mutation reported previously (c.G155A, p.R52H) in 2 additional patients with early-onset epilepsy. Similar to the original brothers described, both presented with tonic seizures in the first month of life. In the first patient, seizures responded to sodium channel blockers and her development was normal at 11 months. Patient 2 is a 15-year-old girl with treatment-resistant focal epilepsy, moderate intellectual disability, and autism. Carbamazepine (sodium channel blocker) was tried later in her course but not continued due to an allergic reaction. Conclusions: The identification of a recurrent de novo mutation in 2 additional unrelated probands with early-onset epilepsy supports the role of FGF12 p.R52H in disease pathogenesis. Affected carriers presented with similar early clinical phenotypes; however, this report expands the phenotype associated with this mutation which contrasts with the progressive course and early mortality of the siblings in the original report. PMID:27872899

  15. Modeling fructose-load-induced hepatic de-novo lipogenesis by model simplification

    Richard J Allen

    2017-03-01

    Full Text Available Hepatic de-novo lipogenesis is a metabolic process implemented in the pathogenesis of type 2 diabetes. Clinically, the rate of this process can be ascertained by use of labeled acetate and stimulation by fructose administration. A systems pharmacology model of this process is desirable because it facilitates the description, analysis, and prediction of this experiment. Due to the multiple enzymes involved in de-novo lipogenesis, and the limited data, it is desirable to use single functional expressions to encapsulate the flux between multiple enzymes. To accomplish this we developed a novel simplification technique which uses the available information about the properties of the individual enzymes to bound the parameters of a single governing ‘transfer function’. This method should be applicable to any model with linear chains of enzymes that are well stimulated. We validated this approach with computational simulations and analytical justification in a limiting case. Using this technique we generated a simple model of hepatic de-novo lipogenesis in these experimental conditions that matched prior data. This model can be used to assess pharmacological intervention at specific points on this pathway. We have demonstrated this with prospective simulation of acetyl-CoA carboxylase inhibition. This simplification technique suggests how the constituent properties of an enzymatic chain of reactions gives rise to the sensitivity (to substrate of the pathway as a whole.

  16. Modeling fructose-load-induced hepatic de-novo lipogenesis by model simplification.

    Allen, Richard J; Musante, Cynthia J

    2017-01-01

    Hepatic de-novo lipogenesis is a metabolic process implemented in the pathogenesis of type 2 diabetes. Clinically, the rate of this process can be ascertained by use of labeled acetate and stimulation by fructose administration. A systems pharmacology model of this process is desirable because it facilitates the description, analysis, and prediction of this experiment. Due to the multiple enzymes involved in de-novo lipogenesis, and the limited data, it is desirable to use single functional expressions to encapsulate the flux between multiple enzymes. To accomplish this we developed a novel simplification technique which uses the available information about the properties of the individual enzymes to bound the parameters of a single governing 'transfer function'. This method should be applicable to any model with linear chains of enzymes that are well stimulated. We validated this approach with computational simulations and analytical justification in a limiting case. Using this technique we generated a simple model of hepatic de-novo lipogenesis in these experimental conditions that matched prior data. This model can be used to assess pharmacological intervention at specific points on this pathway. We have demonstrated this with prospective simulation of acetyl-CoA carboxylase inhibition. This simplification technique suggests how the constituent properties of an enzymatic chain of reactions gives rise to the sensitivity (to substrate) of the pathway as a whole.

  17. De novo mutation in the dopamine transporter gene associates dopamine dysfunction with autism spectrum disorder.

    Hamilton, P J; Campbell, N G; Sharma, S; Erreger, K; Herborg Hansen, F; Saunders, C; Belovich, A N; Sahai, M A; Cook, E H; Gether, U; McHaourab, H S; Matthies, H J G; Sutcliffe, J S; Galli, A

    2013-12-01

    De novo genetic variation is an important class of risk factors for autism spectrum disorder (ASD). Recently, whole-exome sequencing of ASD families has identified a novel de novo missense mutation in the human dopamine (DA) transporter (hDAT) gene, which results in a Thr to Met substitution at site 356 (hDAT T356M). The dopamine transporter (DAT) is a presynaptic membrane protein that regulates dopaminergic tone in the central nervous system by mediating the high-affinity reuptake of synaptically released DA, making it a crucial regulator of DA homeostasis. Here, we report the first functional, structural and behavioral characterization of an ASD-associated de novo mutation in the hDAT. We demonstrate that the hDAT T356M displays anomalous function, characterized as a persistent reverse transport of DA (substrate efflux). Importantly, in the bacterial homolog leucine transporter, substitution of A289 (the homologous site to T356) with a Met promotes an outward-facing conformation upon substrate binding. In the substrate-bound state, an outward-facing transporter conformation is required for substrate efflux. In Drosophila melanogaster, the expression of hDAT T356M in DA neurons-lacking Drosophila DAT leads to hyperlocomotion, a trait associated with DA dysfunction and ASD. Taken together, our findings demonstrate that alterations in DA homeostasis, mediated by aberrant DAT function, may confer risk for ASD and related neuropsychiatric conditions.

  18. De novo and rare inherited copy-number variations in the hemiplegic form of cerebral palsy.

    Zarrei, Mehdi; Fehlings, Darcy L; Mawjee, Karizma; Switzer, Lauren; Thiruvahindrapuram, Bhooma; Walker, Susan; Merico, Daniele; Casallo, Guillermo; Uddin, Mohammed; MacDonald, Jeffrey R; Gazzellone, Matthew J; Higginbotham, Edward J; Campbell, Craig; deVeber, Gabrielle; Frid, Pam; Gorter, Jan Willem; Hunt, Carolyn; Kawamura, Anne; Kim, Marie; McCormick, Anna; Mesterman, Ronit; Samdup, Dawa; Marshall, Christian R; Stavropoulos, Dimitri J; Wintle, Richard F; Scherer, Stephen W

    2018-02-01

    PurposeHemiplegia is a subtype of cerebral palsy (CP) in which one side of the body is affected. Our earlier study of unselected children with CP demonstrated de novo and clinically relevant rare inherited genomic copy-number variations (CNVs) in 9.6% of participants. Here, we examined the prevalence and types of CNVs specifically in hemiplegic CP.MethodsWe genotyped 97 unrelated probands with hemiplegic CP and their parents. We compared their CNVs to those of 10,851 population controls, in order to identify rare CNVs (<0.1% frequency) that might be relevant to CP. We also sequenced exomes of "CNV-positive" trios.ResultsWe detected de novo CNVs and/or sex chromosome abnormalities in 7/97 (7.2%) of probands, impacting important developmental genes such as GRIK2, LAMA1, DMD, PTPRM, and DIP2C. In 18/97 individuals (18.6%), rare inherited CNVs were found, affecting loci associated with known genomic disorders (17p12, 22q11.21) or involving genes linked to neurodevelopmental disorders.ConclusionWe found an increased rate of de novo CNVs in the hemiplegic CP subtype (7.2%) compared to controls (1%). This result is similar to that for an unselected CP group. Combined with rare inherited CNVs, the genomic data impacts the understanding of the potential etiology of hemiplegic CP in 23/97 (23.7%) of participants.

  19. Use of transient elastography to predict de novo recurrence after radiofrequency ablation for hepatocellular carcinoma.

    Lee, Sang Hoon; Kim, Seung Up; Jang, Jeong Won; Bae, Si Hyun; Lee, Sanghun; Kim, Beom Kyung; Park, Jun Yong; Kim, Do Young; Ahn, Sang Hoon; Han, Kwang-Hyub

    2015-01-01

    Liver stiffness (LS) measurement using transient elastography can accurately assess the degree of liver fibrosis, which is associated with the risk of the development of hepatocellular carcinoma (HCC). We investigated whether LS values could predict HCC de novo recurrence after radiofrequency ablation (RFA). This retrospective, multicenter study analyzed 111 patients with HCC who underwent RFA and LS measurement using transient elastography between May 2005 and April 2011. All patients were followed until March 2013 to monitor for HCC recurrence. This study included 76 men and 35 women with a mean age of 62.4 years, and the mean LS value was 21.2 kPa. During the follow-up period (median 22.4 months), 47 (42.3%) patients experienced HCC de novo recurrence, and 18 (16.2%) died. Patients with recurrence had significantly more frequent liver cirrhosis, more frequent history of previous treatment for HCC, higher total bilirubin, larger spleen size, larger total tumor size, higher tumor number, higher LS values, and lower platelet counts than those without recurrence (all P13.0 kPa were at significantly greater risk for recurrence after RFA, with a hazard ratio (HR) of 3.115 (95% confidence interval [CI], 1.238-7.842, Pmeasurement is a useful predictor of HCC de novo recurrence and overall survival after RFA.

  20. Cognitive impairment is associated with Hoehn and Yahr stages in early, de novo Parkinson disease patients.

    Siciliano, Mattia; De Micco, Rosa; Trojano, Luigi; De Stefano, Manuela; Baiano, Chiara; Passaniti, Carla; De Mase, Antonio; Russo, Antonio; Tedeschi, Gioacchino; Tessitore, Alessandro

    2017-08-01

    The relationship between motor impairment and cognitive deterioration has long been described in Parkinson's disease (PD). The aim of the study was to compare cognitive performance of de novo PD patients in relation to the motor impairment severity according to Hoehn and Yahr (HY) stages. Forty de novo PD patients at HY stage I and 40 patients at HY stage II completed a standardized neuropsychological battery. A multivariate analysis of covariance was used to compare cognitive performance between HY groups. Odds ratios (ORs) were employed to explore the risk of cognitive impairment between HY stages. Finally, the prevalence of mild cognitive impairment (MCI) was estimated for patients in HY stage I and II. Patients at HY stage I obtained better scores on neuropsychological tests than patients at HY stage II (p = 0.001). Univariate analysis of covariance revealed significant differences between HY stages on Rey's auditory verbal learning test -immediate recall (p cognitive impairment were greater for HY stage II than stage I group. MCI occurred in 7.5% of patients in HY stage I, and in 42.5% of patients in HY stage II. In de novo PD patients, the severity of motor impairment at the diagnosis is associated to cognitive deficits and higher risk of MCI. Copyright © 2017 Elsevier Ltd. All rights reserved.

  1. De novo-based transcriptome profiling of male-sterile and fertile watermelon lines.

    Rhee, Sun-Ju; Kwon, Taehyung; Seo, Minseok; Jang, Yoon Jeong; Sim, Tae Yong; Cho, Seoae; Han, Sang-Wook; Lee, Gung Pyo

    2017-01-01

    The whole-genome sequence of watermelon (Citrullus lanatus (Thunb.) Matsum. & Nakai), a valuable horticultural crop worldwide, was released in 2013. Here, we compared a de novo-based approach (DBA) to a reference-based approach (RBA) using RNA-seq data, to aid in efforts to improve the annotation of the watermelon reference genome and to obtain biological insight into male-sterility in watermelon. We applied these techniques to available data from two watermelon lines: the male-sterile line DAH3615-MS and the male-fertile line DAH3615. Using DBA, we newly annotated 855 watermelon transcripts, and found gene functional clusters predicted to be related to stimulus responses, nucleic acid binding, transmembrane transport, homeostasis, and Golgi/vesicles. Among the DBA-annotated transcripts, 138 de novo-exclusive differentially-expressed genes (DEDEGs) related to male sterility were detected. Out of 33 randomly selected newly annotated transcripts and DEDEGs, 32 were validated by RT-qPCR. This study demonstrates the usefulness and reliability of the de novo transcriptome assembly in watermelon, and provides new insights for researchers exploring transcriptional blueprints with regard to the male sterility.

  2. Photoreactivation of conversion and de novo suppressor mutation in Escherichia coli

    Bockrath, R C; Plamer, J E [Indiana Univ., Indianapolis (USA). Dept. of Microbiology

    1977-04-01

    Studies of mutagenesis and photoreactivation in various E.coli strains have shown that conversion mutation of a mutant containing an amber suppressor to one containing an ochre suppressor is sensitive to photoreactivation. Direct photoreactivation by photoreactivating light (PRL) after uv mutagenesis reduced mutation frequencies by a factor of about 2 for each minute of exposure during the first 5 to 8 min of exposure for cells with normal repair capacity. Conversion and potential de novo suppressor mutations were about equally sensitive. For conversion, the sensitivities to PRL were identical in the repair-normal and excisions-repair-deficient strains. For de novo suppressor mutation, the rate of mutation frequency reduction by PRL in the repair-deficient strain was about one-half that in the other strains. The results suggest that ultraviolet radiation produces both de novo suppressor mutation and conversion at the sup(E,B) locus by photoreversible pyrimidine dimers in the DNA. The causative dimers could be Thy()Cyt dimers in the transcribed strand or the non-transcribed strand, respectively.

  3. Similar prognosis of transformed and de novo diffuse large B-cell lymphomas in patients treated with immunochemotherapy.

    Sorigue, Marc; Garcia, Olga; Baptista, Maria Joao; Sancho, Juan-Manuel; Tapia, Gustavo; Mate, José Luis; Feliu, Evarist; Navarro, José-Tomás; Ribera, Josep-Maria

    2017-03-22

    The prognosis of diffuse large B-cell lymphomas (DLBCL) transformed from indolent lymphoma (TL) has been considered poorer than that of de novo DLBCL. However, it seems to have improved since the introduction of rituximab. We compared the characteristics (including the cell-of-origin), and the prognosis of 29 patients with TL and 101 with de novo DLBCL treated with immunochemotherapy. Patients with TL and de novo DLBCL had similar characteristics. All TL cases evolving from follicular lymphoma were germinal-center B-cell-like, while those TL from marginal zone lymphoma or chronic lymphocytic leukemia were non-germinal-center B-cell-like. The complete response rate was similar in TL and de novo DLBCL (62 vs. 66%, P=.825). The 5-year overall and progression-free survival probabilities (95% CI) were 59% (40-78) and 41% (22-60) for TL and 63% (53-73) and 60% (50-70) for de novo DLBCL, respectively (P=.732 for overall survival and P=.169 for progression-free survival). In this study, the prognosis of TL and de novo DLBCL treated with immunochemotherapy was similar. The role of intensification with stem cell transplantation in the management of TL may be questionable in the rituximab era. Copyright © 2016 Elsevier España, S.L.U. All rights reserved.

  4. An 11bp region with stem formation potential is essential for de novo DNA methylation of the RPS element.

    Matthew Gentry

    Full Text Available The initiation of DNA methylation in Arabidopsis is controlled by the RNA-directed DNA methylation (RdDM pathway that uses 24nt siRNAs to recruit de novo methyltransferase DRM2 to the target site. We previously described the REPETITIVE PETUNIA SEQUENCE (RPS fragment that acts as a hot spot for de novo methylation, for which it requires the cooperative activity of all three methyltransferases MET1, CMT3 and DRM2, but not the RdDM pathway. RPS contains two identical 11nt elements in inverted orientation, interrupted by a 18nt spacer, which resembles the features of a stemloop structure. The analysis of deletion/substitution derivatives of this region showed that deletion of one 11nt element RPS is sufficient to eliminate de novo methylation of RPS. In addition, deletion of a 10nt region directly adjacent to one of the 11nt elements, significantly reduced de novo methylation. When both 11nt regions were replaced by two 11nt elements with altered DNA sequence but unchanged inverted repeat homology, DNA methylation was not affected, indicating that de novo methylation was not targeted to a specific DNA sequence element. These data suggest that de novo DNA methylation is attracted by a secondary structure to which the two 11nt elements contribute, and that the adjacent 10nt region influences the stability of this structure. This resembles the recognition of structural features by DNA methyltransferases in animals and suggests that similar mechanisms exist in plants.

  5. Heterologous aggregates promote de novo prion appearance via more than one mechanism.

    Fatih Arslan

    2015-01-01

    Full Text Available Prions are self-perpetuating conformational variants of particular proteins. In yeast, prions cause heritable phenotypic traits. Most known yeast prions contain a glutamine (Q/asparagine (N-rich region in their prion domains. [PSI+], the prion form of Sup35, appears de novo at dramatically enhanced rates following transient overproduction of Sup35 in the presence of [PIN+], the prion form of Rnq1. Here, we establish the temporal de novo appearance of Sup35 aggregates during such overexpression in relation to other cellular proteins. Fluorescently-labeled Sup35 initially forms one or a few dots when overexpressed in [PIN+] cells. One of the dots is perivacuolar, colocalizes with the aggregated Rnq1 dot and grows into peripheral rings/lines, some of which also colocalize with Rnq1. Sup35 dots that are not near the vacuole do not always colocalize with Rnq1 and disappear by the time rings start to grow. Bimolecular fluorescence complementation failed to detect any interaction between Sup35-VN and Rnq1-VC in [PSI+][PIN+] cells. In contrast, all Sup35 aggregates, whether newly induced or in established [PSI+], completely colocalize with the molecular chaperones Hsp104, Sis1, Ssa1 and eukaryotic release factor Sup45. In the absence of [PIN+], overexpressed aggregating proteins such as the Q/N-rich Pin4C or the non-Q/N-rich Mod5 can also promote the de novo appearance of [PSI+]. Similar to Rnq1, overexpressed Pin4C transiently colocalizes with newly appearing Sup35 aggregates. However, no interaction was detected between Mod5 and Sup35 during [PSI+] induction in the absence of [PIN+]. While the colocalization of Sup35 and aggregates of Rnq1 or Pin4C are consistent with the model that the heterologous aggregates cross-seed the de novo appearance of [PSI+], the lack of interaction between Mod5 and Sup35 leaves open the possibility of other mechanisms. We also show that Hsp104 is required in the de novo appearance of [PSI+] aggregates in a [PIN

  6. In situ variation in leaf anatomy and morphology of Andira legalis (Leguminosae in two neighbouring but contrasting light environments in a Brazilian sandy coastal plain Variação in situ em anatomia e morfologia foliar de Andira legalis (Leguminosae em dois ambientes adjacentes, porém contrastantes quanto ao regime de luz, em restinga brasileira

    Daniela Carvalho Pereira

    2009-03-01

    Full Text Available Andira legalis (Vell. Toledo is a legume shrub widespread along the sandy plains of the Brazilian coast. It occurs both shaded, in forest habitats, or exposed to full sunlight, in the vegetation islands growing on sand deposits. Previous studies reported a high range of morpho-physiological variation for this species along a geographical gradient. This study compared leaf morphology and anatomy of A. legalis in two distinct but adjacent light environments: a dense forest (shaded and a scrub of Palmae (exposed. We studied the amplitude of variation for these traits within a small (0.5 ha geographical area. Leaf anatomy parameters were measured for five leaves collected from five plants in each habitat. The parameters measured were leaf and mesophyll thickness, thickness of the outer periclinal cell wall, thickness of the adaxial and abaxial epidermis and vascular bundle transversal section area, and also common epidermal cells, stomata and trichome density. Leaf morphology parameters were obtained from five leaves of each of 20 plants in each site. Dry and fresh weights were measured to obtain leaf specific mass and succulence. All anatomy and morphology parameters, except trichome density, were significantly higher for the sun-exposed plants. Less expected, however, was the marked qualitative difference between exposed and shaded plants: in the former the mesophyll had a unilateral symmetry (i.e., the whole mesophyll occupied by photosynthetic tissue, whereas in the latter there was a dorsiventral symmetry (i.e., partly palisade and partly spongy parenchyma. Such amplitude of variation shows that even within a small geographic area A. legalis has a broad ecological plasticity.Andira legalis (Vell. Toledo é uma leguminosa arbustiva distribuída ao longo de planícies arenosas da costa brasileira. Tem ocorrência em ambientes florestais, sombreadas, ou em ilhas de vegetação de restingas abertas, onde é exposta à plena radiação solar

  7. EFFECT OF LEGUME TREES ON SOIL MACROFAUNA OF A Brachiaria brizantha cv. MARANDU PASTURE EFEITO DE LEGUMINOSAS ARBÓREAS SOBRE A MACROFAUNA DO SOLO EM PASTAGEM DE Brachiaria brizantha cv. MARANDU

    Avílio Antonio Franco

    2007-09-01

    Full Text Available

    The objective of this research was to evaluate the effect of four legume tree species in a Brachiaria brizantha cv. Marandu pasture on soil macrofauna density and diversity, in a low natural fertility soil. The tree leguminous species introduced in the pasture were Pseudosamanea guachapele, Mimosa artemisiana, Mimosa tenuiflora, and Enterolobium contortisiliquum. The macrofauna sampling consisted in collecting six soil monoliths with 25 cm x 25 cm x 30 cm under tree canopies or in a transect in the single Brachiaria pasture. The densities varied from 602 individuals.m-2 under the canopy of E. contortisiliquum to two individuals.m-2 in the single pasture. The largest group richness was found under M. tenuiflora canopy (ten groups, followed by P. guachapele (nine groups, E. contortisiliquum (seven groups and M. artemisiana (six groups. The leguminous species influence was related to N content and to C:N ratio of leaf material. M. artemisiana and M. tenuiflora favored the occurrence of Oligochaeta and Coleoptera larvae, while under the P. guachapele and E. contortisiliquum canopies Formicidae activity was more intense.

    KEY-WORDS: Soil macrofauna; sivipastoral systems; soil quality.

    O objetivou deste trabalho foi avaliar o efeito de quatro espécies leguminosas arbóreas, em uma pastagem de Brachiaria brizantha cv. Marandu, com dois anos de estabelecimento, sobre a densidade e diversidade da macrofauna de um planossolo de baixa fertilidade natural. As espécies arbóreas introduzidas na pastagem foram: Pseudosamanea guachapele, Mimosa artemisiana, Mimosa tenuiflora e Enterolobium contortisiliquum. A amostragem da macrofauna consistiu na retirada de seis monolitos de solo com 25 cm x 25 cm x 30 cm sob a copa das árvores ou em um transecto na pastagem solteira. As densidades variaram de 602

  8. BEHAVIOR ANALYSIS OF TREE LEGUME SPECIES INTRODUCED IN TROPICAL GRASS PASTURES ANÁLISE DO COMPORTAMENTO DE ESPÉCIES LEGUMINOSAS ARBÓREAS INTRODUZIDAS EM PASTAGENS DE GRAMÍNEAS TROPICAIS

    Janaina Ribeiro Costa

    2007-09-01

    Full Text Available

    The objective of this study was to analyze the behavior of sixteen tree legume species introduced in tropical grass pastures, without seedling protection and in the presence of animals, in three municipalities of Rio de Janeiro State, Brazil. A multivariate factor analysis method was used with sixteen variables related to seven experimental units in the municipalities and ten variables related to leguminous species. The first rotative factor (F1, which explained the highest percentage of the observed variance (62.7%, showed that the Fazenda Santo Antônio experimental unit, in the Itatiaia municipality, presented the highest values for Ca+Mg, N, and Mg, and the lowest value for P (soil sample collected at the beginning of experimental period, while the opposite was observed for Sipa I unit, in the Seropédica municipality. The F1 factor also showed that the species Jurema branca (Mimosa artemisiana and Jurema preta (Mimosa tenuiflora presented the highest values for diameter growth rate of stem and crown, and the lowest percentage of pastured seedlings, while Leucena (Leucaena leucocephala showed the inverse behavior. Results indicate that M. artemisiana and M. tenuiflora present better potential for introduction in tropical grass pastures without seedling protection and without animal exclusion.

    KEY-WORDS: Tree seedling; factor analysis; communality, mimosa; Leucaena.

    O objetivo deste trabalho foi analisar o comportamento de dezesseis espécies leguminosas arbóreas introduzidas em pastagens de gramíneas tropicais, sem proteção das mudas e na presença de animais, em três municípios do estado do Rio de Janeiro. Para isso, utilizou-se a técnica multivariada da análise de fatores, considerando-se dezesseis variáveis relativas a sete unidades experimentais nos municípios e dez vari

  9. IDENTIFICACIÓN, USOS Y MEDICIÓN DE LEGUMINOSAS ARBÓREAS FORRAJERAS EN RANCHOS GANADEROS DEL SUR DEL ESTADO DE MÉXICO

    Jaime Olivares Pérez

    2011-06-01

    Full Text Available El objetivo del trabajo fue identificar las especies arbóreas leguminosas, usos, densidad, frecuencia, abundancia y medidas dasométricas en ranchos ganaderos del sur del Estado de México; así como evaluar la producción de follaje (kg materia seca árbol-1ha-1 de Pithecellobium dulce, Haematoxylum brasiletto y Gliricidia sepium —preferidas por los ganaderos como fuente de forraje y con mayor densidad—; y evaluar  la producción de fruto (kg materia seca  árbol-1ha-1 de Acacia  cochliacantha y P. dulce. La información de usos se obtuvo mediante entrevistas semiestructuradas aplicadas a 69 ganaderos, cantidad que representó 83% de la población. Las mediciones de los árboles se realizaron en seis ranchos mediante trabajo de campo. La información se analizó usando estadísticas descriptivas. Se identificaron 12 especies arbóreas (Acacia cochliacantha, Lysiloma divaricata, Pithecellobium dulce, Haematoxylum brasiletto y Gliricidia sepium, las cuales presentaron mayor densidad, frecuencia y abundancia. De 46.6% de las arbóreas, su follaje y fruto es consumido por rumiantes; de 20%, es consumido follaje, fruto y flor. Se proporcionan de cinco a ocho usos en 80% de las especies, además del forrajero, como leña, poste, sombra, cerca viva, medicinal, consumo humano, artesanal y maderable. Las arbóreas con mayor fuste fueron: Caesalpinia coriaria, Pithecellobium dulce, Enterolobium cyclocarpum y Leucaena esculenta, con diámetro basal (DB de 47.11 a 57.2 cm, diámetro a la altura del pecho (DAP de 49.34 a 50.3 cm y altura (A de 7.4 a 14.5 m,  los cuales son preferidos para sombra. La producción de follaje de Pithecellobium dulce, Haematoxylum brasiletto y Gliricidia sepium fue de 44.5, 8.8 y 8.4 kg MS arbol-1, respectivamente. La producción de fruto de Pithecellobium dulce y Acacia cochliacantha fue 63.9 y 21.7 kg MS árbol-1, respectivamente. Las 12 leguminosas

  10. Prospeção de inibidores de serinoproteinases em folhas de leguminosas arbóreas da floresta Amazônica Prospecting serine proteinase inhibitors in leaves from leguminous trees of the Amazon forest

    Larissa Ramos Chevreuil

    2011-03-01

    Full Text Available Os inibidores de proteinases são proteínas extensivamente investigadas nos tecidos de estocagem, mas pouco prospectadas em outros tecidos vegetais. O objetivo deste estudo foi detectar a presença de inibidores de serinoproteinases em extratos foliares de quinze espécies de leguminosas arbóreas da Amazônia. As espécies estudadas foram: Caesalpinia echinata, C. ferrea, Cedrelinga cateniformis, Copaifera multijuga, Dinizia excelsa, Enterolobium contortisiliquum, E. maximum, E. schomburgkii, Leucaena leucocephala, Ormosia paraensis, Parkia multijuga, P. pendula, P. platycephala, Swartzia corrugata e S. polyphylla. Folhas foram coletadas, secas a 30ºC durante 48 h, trituradas e submetidas à extração com NaCl (0,15 M, 10% p/v resultando no extrato total. Ensaios foram executados para determinar a concentração de proteínas e detectar a atividade inibitória contra a tripsina e quimotripsina bovina. Os teores de proteínas bruta e solúvel nos extratos foliares variaram de 7,9 a 31,2% e 1,3 a 14,8%, respectivamente. A atividade inibitória sobre a tripsina e quimotripsina foi observada em todos os extratos foliares. Contudo, nos extratos de E. maximum, L. leucocephala, P. pendula, S. corrugata e S. polyphylla a inibição foi maior sobre a tripsina, enquanto o extrato de P. multijuga foi mais efetivo contra a quimotripsina. Nós concluímos que nos extratos foliares de leguminosas arbóreas têm inibidores de serinoproteinases e exibem potencial aplicações biotecnológicas.The proteinase inhibitors are proteins extensively investigated in tissue storage, but few prospected in other plant tissues. The aim of this study was to detect the presence of serine proteinase inhibitors in leaf extracts from fifteen species of leguminous trees of the Amazon forest. The species studied were Caesalpinia echinata, C. ferrea, Cedrelinga cateniformis, Copaifera multijuga, Dinizia excelsa, Enterolobium contortisiliquum, E. maximum, E. schomburgkii

  11. Aerobic stability of triticale silage in single culture or in mixtures with oat and/or legumes Estabilidade aeróbia de silagens de triticale em cultivo exclusivo ou em misturas com aveia e/ou leguminosas

    Valter Harry Bumbieris Junior

    2010-11-01

    Full Text Available The objective of the present study was to evaluate the aerobic stability and losses during the fermentation process of triticale silages in single crop or in mixtures with oats and/or legumes. The following crops were used for silage production: triticale (X. Triticosecale Wittimack, triticale intercropped with forage pea (Pisum arvense and triticale intercropped with oats (Avena strigosa Schreb, forage pea and vetch (Vicia sativa. The dry matter content and its recovery did not differ among the silages. Buffer capacity was higher for tricale silage intercropped with oats, forage pea and vetch(88.67 m eq. NaOH/100 g DM followed by triticale intercropped with forage pea (80.80 m eq. NaOH/100 g DM. Electric conductivity values were higher in the intercropped triticale silages. Triticale silage presented the lowest temperatures observed in the silos, and the silages of intercropped triticale silages presented higher heat retention and higher pH values. Silage of triticale intercropped with oats and legumes presented lower aerobic stability but it did not reduce the aerobic stability of the total feed. Dry matter recovery during storage and in stability evaluations in aerobiosis is similar among the silages.O objetivo neste trabalho foi avaliar a estabilidade aeróbia e as perdas durante o processo de fermentação de silagens de triticale em cultivo exclusivo ou em misturas com aveia e/ou leguminosas. As culturas utilizadas para produção das silagens foram: triticale (X. Triticosecale Wittimack; triticale em consórcio com ervilha-forrageira (Pisum arvense; e triticale em consórcio com aveia (Avena strigosa Schreb, ervilha-forrageira e ervilhaca (Vicia sativa. O teor de matéria seca e a recuperação de matéria seca não diferiram entre as silagens. A capacidade tampão foi maior para a silagem de triticale cultivado em consórcio com aveia, ervilha-forrageira e ervilhaca (88,67 m eq. NaOH/100 g de MS, seguida da silagem de triticale cultivado

  12. Avaliação da solubilidade de cobre e zinco em caldos de leguminosas Evaluation of the solubility of copper and zinc in a salty, watrry vegetatable soup

    Édira Castello Branco de Andrade

    2003-12-01

    Full Text Available Os metais cobre e zinco podem se apresentar sob diversas formas químicas na natureza: como sais, estando sob a forma de íons I e II ou como compostos orgânicos, complexados com aminoácidos e proteínas. A forma mais biodisponível ao organismo é a forma de compostos organo quelados. Avaliando os teores dos metais em caldo de leguminosas processadas termicamente em meios salino e aquoso é possível avaliar a solubilidade destes metais. Duas marcas e dois lotes de amostras de feijão preto, feijão branco, feijão carioquinha, feijão mulatinho, feijão manteiga, ervilha e lentilha foram processadas termicamente em meios salino e aquoso e determinou-se os teores totais de cobre e zinco em seus caldos. Os caldos foram dissolvidos em HCl 2molL-1 e o teor total de cobre e zinco nas amostras foi determinado através da espectroscopia de absorção atômica em chama. Na análise da rejeição de resultados foi aplicado o teste Dixon e o teste t de student. Os resultados mostraram que a solubilidade média dos metais cobre e zinco nos meios aquoso e salino foram respectivamente 8 e 6%. Acredita-se que os compostos de cobre e zinco nas leguminosas analisadas não são compostos inorgânicos facilmente solúveis em água. Estudos de especiação podem auxiliar na análise da biodisponibilidade destes metais.Copper and zinc can appear in nature under chemical forms, such as salts, being as íons I and II or as organic compounds, synthesized as amino acids and proteins. The most bio-available form to the human body are organic compounds. The solubility of these metals can be determined by evaluating their ratio in a both of legumes thermally processed in an aqueous and a saline mediium. Samples of several varieties of beans, peas, lentils and chickpeas, in two batches containing two different brands of each variety, were thermally processeced in an aqueous and a saline medium and the total ratio of copper and zinc in their respective broths was

  13. Cobertura do solo e estoque de nutrientes de duas leguminosas perenes, considerando espaçamentos e densidades de plantio Soil cover and nutrient accumulation of two perennial legumes as functions of spacing and planting densities

    A. Perin

    2004-02-01

    Full Text Available O estabelecimento de leguminosas herbáceas perenes nos sistemas de produção constitui ainda um desafio, principalmente por apresentarem crescimento inicial lento. Para viabilizar sua implantação, este trabalho objetivou determinar as taxas de cobertura do solo, produção de matéria seca, teores e acumulação de N, P e K das leguminosas herbáceas perenes galáxia (Galactia striata e cudzu tropical (Pueraria phaseoloides, considerando espaçamentos e densidades de plantio. O experimento, instalado em dezembro/98 na Embrapa Agrobiologia, Seropédica (RJ, constou do delineamento em blocos ao acaso, em arranjo fatorial 2 x 2 x 4, com quatro repetições. Os tratamentos constaram das espécies galáxia e cudzu tropical, plantadas em dois espaçamentos entre sulcos de plantio (25 e 50 cm e quatro densidades de plantas (5, 10, 15 e 20 plantas m-1. A densidade adequada para a rápida cobertura do solo para cudzu tropical e galáxia foi de 10 plantas m-1, no espaçamento de 25 cm entre os sulcos de plantio. A maior produção de matéria seca e acumulação de N, P e K na parte aérea das plantas foram evidenciadas apenas no primeiro corte, sendo os maiores valores obtidos no espaçamento de 25 cm e na densidade de 10 plantas m-1. O espaçamento de 25 cm com 10 plantas m-1 foi a combinação mais adequada para a plena formação da cobertura viva do solo com cudzu tropical e galáxia.The establishment of herbaceous perennial leguminous in production systems is still a challenge, mainly because of the slow initial growth. Evaluations of the soil cover ratio, dry matter production, contents and accumulations of nitrogen, phosphorus, and potassium of the herbaceous perennial Galactia striata and Pueraria phaseoloides, sown in different densities and row spacing, aimed at making their establishments feasible. The experiment was conducted in December/98 at Embrapa Agrobiologia, Seropédica (RJ, in a completely randomized block design, as a factorial

  14. NOVO SISTEMA DE SEMEADURA CONSERVACIONISTA MULTIFUNCIONAL PARA A AGRICULTURA FAMILIAR: NOVO DRAGÃO/ NEW CONSERVATIONIST SYSTEM SEEDING FOR SMALL FARMS WITH MULTIFUNCTIONAL NEW DRAGON

    Daniel ALBIERO

    2010-11-01

    Full Text Available A agricultura familiar exerce papel importante na agricultura brasileira, sendo responsável por grande parcela da produção nacional de alimentos. No entanto não possui muitos equipamentos específicos para a semeadura. O objetivo principal deste trabalho foi o desenvolvimento e testes de um novo sistema de semeadura conservacionista para a agricultura familiar através de uma máquina multifuncional. Uma nova semeadora construída na filosofia de plantio em faixas com “Paraplow” Rotativo foi testada em campo em experimentos sob condições reais. Como resultado obteve-se um protótipo com bom desempenho na semeadura de soja, de fácil operação e manutenção, e principalmente adaptado às necessidades operacionais da agricultura familiar.Palavras-chaves: Sistema de semeadura, agricultura familiar, semedora multifuncional.

  15. Da família patriarcal à contemporânea. Entre o vellho e o novo: o surgimento dos novos arranjos familiares

    Móas, Luciane da Costa

    2012-01-01

    O presente artigo propõe uma dupla abordagem da família levando em consideração o caráter socioantropológico e também histórico-evolutivo da legislação brasileira. Tem como objetivo interrogar a ideia de crise na ou da família em razão das mudanças verificadas em sua constituição: abandonou-se o modelo patriarcal, único existente no passado, que cedeu o passo aos modelos diversos, dos quais se originaram os novos arranjos familiares. O texto cuida da família como o fenômeno social que nos é m...

  16. "A poesia dos simples": arte popular e nação no Estado Novo "The poetry of the simple": popular art and nation in the Estado Novo

    Vera Marques Alves

    2007-05-01

    Full Text Available Nos anos 30 e 40 do século XX, o Secretariado da Propaganda Nacional - órgão máximo da propaganda do regime de Salazar - desenvolveu um largo conjunto de iniciativas folcloristas que marcaram a memória crítica do Estado Novo. Este artigo sonda os limites de uma interpretação que reduz tal política a um instrumento de domesticação do povo, mostrando que é nos mecanismos de afirmação da nação, dentro e fora das fronteiras portuguesas, que podemos encontrar a explicação mais pertinente para a campanha etnográfica então empreendida. E é em função de tal proposta que abordaremos ainda os processos de manipulação e selecção dos materiais da cultura popular aí implicados, mostrando como, através dos mesmos, o SPN;/;SNI veiculou um retrato do país baseado na imagem do povo português enquanto camponês-esteta.In the 1930’ and 1940’ the Secretariado da Propaganda Nacional - the propaganda head office of Salazar’s dictatorship - promoted several folkloristic events, which became a core element of the Estado Novo current memory. This paper shows how the Secretariado‘s ethnographic campaign relates mostly with the politics of national identity building developed inside the Portuguese borders and in the international arena. In this context, I examine the selective approach to the folk culture materials evolved in those pratics. I also try to illuminate the ways by witch such materials were used to create a representation of the Portuguese folk as a people of artist-peasants, and of Portugal as a pacific and lovable country.

  17. Contrôle genético dos "frutos chochos" no Café "Mundo Novo" Manofactorial inheritance of "empty-locule" in the Mundo Novo coffee

    A. J. T. Mendes

    1955-01-01

    Full Text Available 1. Decorre do presente trabalho que no Café Mundo Novo há dois grupos distintos de plantas : a de baixa ocorrência de frutos chochos; b de alta ocorrência de frutos chochos. 2. Há evidências de que a existência de 2 grupos distintos de plantas é devida a um par de fatores genéticos Dd. As plantas onde é baixa a ocorrência de frutos chochos são de constituição genética DD. As demais são Dd. Não há o grupo dd, pois que a combinação endosperma ddd e embrião dd é letal. 3. Segundo a hipótese, a letalidade dos fatores dd se manifesta quando o endosperma tem 2 a 3 mm de diâmetro; nesse ponto estaciona o crescimento e êle se transforma num disco (donde o símbolo d para o gen em questão. Raras vêzes a ação letal se manifesta antes dêsse estado e então nada ou quase nada resta do endosperma. Outras vezes a ação letal é tardia: o endosperma se desenvolve em semente mas esta não germina. 4. As populações de café Mundo Novo que estão se formando no Estado de São Paulo terão diferentes proporções de plantas com e sem o defeito das lojas vazias, dependendo isso da fonte onde se procurarem as sementes. 5. Limitando-se a selecionar as plantas Mundo Novo dentro do grupo de baixa ocorrência de chochos o melhorista encontra base científica para ehminar um notório defeito da variedade.It was shown in a recent paper that the occurrence of empty locules in coffee fruits of the variety Mundo Novo (Coffea arabica L. is due to an arrest in the endosperm development that takes place at a definite stage, leading to the formation of a small disc ; this rudimentary type of endosperm has been called "discoid endosperm". A suggestion was then made that this process might be controlled by genetic factors. Under this assumption, normal plants were DD; plants in which the defect occurred, Dd, and the homozygous, recessive form was lethal. The high correlation between discoid endosperm and empty locules permitted a clear

  18. CIPESC® Curitiba: o trabalho da enfermagem no Distrito Bairro Novo CIPESC® Curitiba: el trabajo de enfermería en el Districto Bairro Novo CIPESC® Curitiba: the work of nursing at Bairro Novo District

    Denise Maria Altino

    2006-08-01

    Full Text Available Curitiba implantou em rede o sistema Classificação Internacional das Práticas de Enfermagem em Saúde Coletiva - CIPESC®. O presente estudo objetivou identificar as atividades exercidas pelos profissionais de enfermagem nas unidades de saúde do distrito Bairro Novo de Curitiba. Trata-se de uma pesquisa descritiva em que foram entrevistados auxiliares e enfermeiras utilizando-se de um check-list. Os resultados mostram que: o acolhimento é realizado por todos; as auxiliares se ocupam mais das atividades assistencial-procedimentais; a totalidade das enfermeiras realiza consulta de enfermagem diariamente, recorrendo ao prontuário eletrônico de base CIPESC®. Conclui-se que, excetuando-se as atividades de pesquisa, houve intensificação e ampliação das atividades assistenciais sistematizadas e embasadas no trabalho cotidiano da enfermagem, intra e extramuros.Curitiba implantó el sistema Clasificación Internacional de las Prácticas de Enfermería en Salud Colectiva - CIPESC®. El presente estudio objetivó identificar las actividades ejercidas por personal de enfermería en la red de atención básica de la salud del distrito Bairro Novo, Curitiba. Ha hecho una investigación junto a los trabajadores de enfermería, recorriendo-se a check-list. Los resultados mostrarán: todos realizan el acogimiento; las auxiliares de enfermería se ocupan más de las actividades asistencial-procedimentales; todas las enfermeras realizan consulta de enfermería diariamente, utilizando-se del prontuario electrónico bases CIPESC®. En conclusión, excepto las actividades del investigación, hube intensificación y ampliación de las actividades asistenciales, que se ubican sistematizadas e embasadas en el trabajo cotidiano de la enfermería, así como la educación y planeamiento.Curitiba has been utilized system CIPESC® - International Nursing Practice Classification in Collective Health. This study goal identifies the activities of nursing staff in

  19. Identification of a novel Plasmopara halstedii elicitor protein combining de novo peptide sequencing algorithms and RACE-PCR

    Madlung Johannes

    2010-05-01

    Full Text Available Abstract Background Often high-quality MS/MS spectra of tryptic peptides do not match to any database entry because of only partially sequenced genomes and therefore, protein identification requires de novo peptide sequencing. To achieve protein identification of the economically important but still unsequenced plant pathogenic oomycete Plasmopara halstedii, we first evaluated the performance of three different de novo peptide sequencing algorithms applied to a protein digests of standard proteins using a quadrupole TOF (QStar Pulsar i. Results The performance order of the algorithms was PEAKS online > PepNovo > CompNovo. In summary, PEAKS online correctly predicted 45% of measured peptides for a protein test data set. All three de novo peptide sequencing algorithms were used to identify MS/MS spectra of tryptic peptides of an unknown 57 kDa protein of P. halstedii. We found ten de novo sequenced peptides that showed homology to a Phytophthora infestans protein, a closely related organism of P. halstedii. Employing a second complementary approach, verification of peptide prediction and protein identification was performed by creation of degenerate primers for RACE-PCR and led to an ORF of 1,589 bp for a hypothetical phosphoenolpyruvate carboxykinase. Conclusions Our study demonstrated that identification of proteins within minute amounts of sample material improved significantly by combining sensitive LC-MS methods with different de novo peptide sequencing algorithms. In addition, this is the first study that verified protein prediction from MS data by also employing a second complementary approach, in which RACE-PCR led to identification of a novel elicitor protein in P. halstedii.

  20. Sensitivity-Informed De Novo Programming for Many-Objective Water Portfolio Planning Under Uncertainty

    Kasprzyk, J. R.; Reed, P. M.; Kirsch, B. R.; Characklis, G. W.

    2009-12-01

    Risk-based water supply management presents severe cognitive, computational, and social challenges to planning in a changing world. Decision aiding frameworks must confront the cognitive biases implicit to risk, the severe uncertainties associated with long term planning horizons, and the consequent ambiguities that shape how we define and solve water resources planning and management problems. This paper proposes and demonstrates a new interactive framework for sensitivity informed de novo programming. The theoretical focus of our many-objective de novo programming is to promote learning and evolving problem formulations to enhance risk-based decision making. We have demonstrated our proposed de novo programming framework using a case study for a single city’s water supply in the Lower Rio Grande Valley (LRGV) in Texas. Key decisions in this case study include the purchase of permanent rights to reservoir inflows and anticipatory thresholds for acquiring transfers of water through optioning and spot leases. A 10-year Monte Carlo simulation driven by historical data is used to provide performance metrics for the supply portfolios. The three major components of our methodology include Sobol globoal sensitivity analysis, many-objective evolutionary optimization and interactive tradeoff visualization. The interplay between these components allows us to evaluate alternative design metrics, their decision variable controls and the consequent system vulnerabilities. Our LRGV case study measures water supply portfolios’ efficiency, reliability, and utilization of transfers in the water supply market. The sensitivity analysis is used interactively over interannual, annual, and monthly time scales to indicate how the problem controls change as a function of the timescale of interest. These results have been used then to improve our exploration and understanding of LRGV costs, vulnerabilities, and the water portfolios’ critical reliability constraints. These results

  1. De Novo Assembly and Characterization of the Transcriptome of Grasshopper Shirakiacris shirakii

    Zhongying Qiu

    2016-07-01

    Full Text Available Background: The grasshopper Shirakiacris shirakii is an important agricultural pest and feeds mainly on gramineous plants, thereby causing economic damage to a wide range of crops. However, genomic information on this species is extremely limited thus far, and transcriptome data relevant to insecticide resistance and pest control are also not available. Methods: The transcriptome of S. shirakii was sequenced using the Illumina HiSeq platform, and we de novo assembled the transcriptome. Results: Its sequencing produced a total of 105,408,878 clean reads, and the de novo assembly revealed 74,657 unigenes with an average length of 680 bp and N50 of 1057 bp. A total of 28,173 unigenes were annotated for the NCBI non-redundant protein sequences (Nr, NCBI non-redundant nucleotide sequences (Nt, a manually-annotated and reviewed protein sequence database (Swiss-Prot, Gene Ontology (GO and Kyoto Encyclopedia of Genes and Genomes (KEGG databases. Based on the Nr annotation results, we manually identified 79 unigenes encoding cytochrome P450 monooxygenases (P450s, 36 unigenes encoding carboxylesterases (CarEs and 36 unigenes encoding glutathione S-transferases (GSTs in S. shirakii. Core RNAi components relevant to miroRNA, siRNA and piRNA pathways, including Pasha, Loquacious, Argonaute-1, Argonaute-2, Argonaute-3, Zucchini, Aubergine, enhanced RNAi-1 and Piwi, were expressed in S. shirakii. We also identified five unigenes that were homologous to the Sid-1 gene. In addition, the analysis of differential gene expressions revealed that a total of 19,764 unigenes were up-regulated and 4185 unigenes were down-regulated in larvae. In total, we predicted 7504 simple sequence repeats (SSRs from 74,657 unigenes. Conclusions: The comprehensive de novo transcriptomic data of S. shirakii will offer a series of valuable molecular resources for better studying insecticide resistance, RNAi and molecular marker discovery in the transcriptome.

  2. BayesMotif: de novo protein sorting motif discovery from impure datasets.

    Hu, Jianjun; Zhang, Fan

    2010-01-18

    Protein sorting is the process that newly synthesized proteins are transported to their target locations within or outside of the cell. This process is precisely regulated by protein sorting signals in different forms. A major category of sorting signals are amino acid sub-sequences usually located at the N-terminals or C-terminals of protein sequences. Genome-wide experimental identification of protein sorting signals is extremely time-consuming and costly. Effective computational algorithms for de novo discovery of protein sorting signals is needed to improve the understanding of protein sorting mechanisms. We formulated the protein sorting motif discovery problem as a classification problem and proposed a Bayesian classifier based algorithm (BayesMotif) for de novo identification of a common type of protein sorting motifs in which a highly conserved anchor is present along with a less conserved motif regions. A false positive removal procedure is developed to iteratively remove sequences that are unlikely to contain true motifs so that the algorithm can identify motifs from impure input sequences. Experiments on both implanted motif datasets and real-world datasets showed that the enhanced BayesMotif algorithm can identify anchored sorting motifs from pure or impure protein sequence dataset. It also shows that the false positive removal procedure can help to identify true motifs even when there is only 20% of the input sequences containing true motif instances. We proposed BayesMotif, a novel Bayesian classification based algorithm for de novo discovery of a special category of anchored protein sorting motifs from impure datasets. Compared to conventional motif discovery algorithms such as MEME, our algorithm can find less-conserved motifs with short highly conserved anchors. Our algorithm also has the advantage of easy incorporation of additional meta-sequence features such as hydrophobicity or charge of the motifs which may help to overcome the limitations of

  3. New experimental model for training in videosurgery Novo modelo experimental para treinamento em videocirurgia

    Danilo Malta Batista

    2012-10-01

    Full Text Available PURPOSE: To develop a new experimental model of lower cost for training in videosurgery. METHODS: This project was performed at the Nucleus of Experimental Surgery of the Bahiana School of Medicine and Public Health, based on previous models described in the literature and under the supervision of the full professor of Operative Technique and Experimental Surgery II. It was made a model cube-shaped, made of wood, with holes distributed in various locations, rubber stoppers for the holes and lined externally with carpet, and internally with laminate. RESULTS: The new experimental model is of low cost and reproduces quite faithfully several videosurgical procedures. CONCLUSION: Medical schools interested in the subject may adopt the new model for training in videosurgery without the need of high costs for making and using these models.OBJETIVO: Desenvolver um novo modelo experimental de baixo custo para treinamento em videocirurgia MÉTODOS: Este projeto foi conduzido no Núcleo de Cirurgia Experimental da Escola Bahiana de Medicina e Saúde Pública, baseado em modelos prévios descritos na literatura e sob a supervisão do professor titular de Técnica Operatória e Cirurgia Experimental II. Foi feito um modelo em formato de cubo, de madeira, com furos distribuídos em vários locais, tampas de borracha para os orifícios e forrado externamente com carpete e internamente com laminado. RESULTADOS: O novo modelo experimental desenvolvido é de baixo custo e reproduz de forma bastante fiel diversos procedimentos videocirúrgicos. CONCLUSÃO: Faculdades médicas interessadas no tema poderão adotar o novo modelo para o treinamento em videocirurgia sem que sejam necessários gastos elevados para a confecção e o uso desses modelos.

  4. Locoregional symptoms in patients with de novo metastatic prostate cancer: Morbidity, management, and disease outcome.

    Patrikidou, Anna; Brureau, Laurent; Casenave, Julien; Albiges, Laurence; Di Palma, Mario; Patard, Jean-Jacques; Baumert, Hervé; Blanchard, Pierre; Bossi, Alberto; Kitikidou, Kyriaki; Massard, Christophe; Fizazi, Karim; Blanchet, Pascal; Loriot, Yohann

    2015-05-01

    The paradigm change observed over the last few years in several solid tumors emphasizes the value of locoregional treatment in the presence of metastatic disease, currently ignored in de novo prostate cancer (CaP). We investigated the effect of the primary tumor that is left untreated on prostate cancer-specific morbidity and mortality, time to castration resistance, and overall survival (OS). We performed a bicentric cohort study. The overall population included de novo metastatic CaP managed at the Genito-Urinary Oncology Unit of the Gustave Roussy Institute and the Urology Clinic of the University Hospital of Pointe-à-Pitre, France. Descriptive statistical and outcome analyses were performed in the overall cohort and also separately in the N+M0 and M+subgroups. The overall cohort included 263 patients. Approximately two-thirds of patients (64%) presented with locoregional symptoms at diagnosis, and 78% throughout the disease. Of the symptomatic patients, 59% required a locoregional procedure. Median OS of patients with locoregional symptoms at diagnosis was shorter than in those who were asymptomatic (47 vs. 86 mo, P = 0.0007); this difference was maintained in the N+M0 and M+subgroups. Median OS and time to castration resistance showed a nonsignificant trend in favor of patients undergoing a locoregional treatment at diagnosis. The presence of symptoms due to locoregional disease in de novo metastatic CaP entails significant morbidity and even mortality and requires active management. Randomized prospective trials are needed to evaluate the role of initial definite locoregional treatment in these patients. Copyright © 2015 Elsevier Inc. All rights reserved.

  5. Developing de novo human artificial chromosomes in embryonic stem cells using HSV-1 amplicon technology.

    Moralli, Daniela; Monaco, Zoia L

    2015-02-01

    De novo artificial chromosomes expressing genes have been generated in human embryonic stem cells (hESc) and are maintained following differentiation into other cell types. Human artificial chromosomes (HAC) are small, functional, extrachromosomal elements, which behave as normal chromosomes in human cells. De novo HAC are generated following delivery of alpha satellite DNA into target cells. HAC are characterized by high levels of mitotic stability and are used as models to study centromere formation and chromosome organisation. They are successful and effective as gene expression vectors since they remain autonomous and can accommodate larger genes and regulatory regions for long-term expression studies in cells unlike other viral gene delivery vectors currently used. Transferring the essential DNA sequences for HAC formation intact across the cell membrane has been challenging for a number of years. A highly efficient delivery system based on HSV-1 amplicons has been used to target DNA directly to the ES cell nucleus and HAC stably generated in human embryonic stem cells (hESc) at high frequency. HAC were detected using an improved protocol for hESc chromosome harvesting, which consistently produced high-quality metaphase spreads that could routinely detect HAC in hESc. In tumour cells, the input DNA often integrated in the host chromosomes, but in the host ES genome, it remained intact. The hESc containing the HAC formed embryoid bodies, generated teratoma in mice, and differentiated into neuronal cells where the HAC were maintained. The HAC structure and chromatin composition was similar to the endogenous hESc chromosomes. This review will discuss the technological advances in HAC vector delivery using HSV-1 amplicons and the improvements in the identification of de novo HAC in hESc.

  6. Facebook - Um novo espaço autobiográfico?

    Maria Tereza Lima

    2015-07-01

    Full Text Available O arigo "Facebook - Um novo espaço autobiográfico?" tem como objetivo central investigar como a perspectiva autobiográfica e biográfica se configura em uma rede social. Levando em consideração esse novo espaço de exteriorização da memória, analisamos as escolhas de uma pessoa ao postar os mais diversos gêneros textuais no Facebook e verificamos até que ponto tais fragmentos textuais narram a história de um indivíduo. Quais textos são postados? O que foi escolhido e o que foi excluído desse perfil? O autor trava um pacto de leitura com o leitor? Se levarmos em consideração que os textos postados nessa rede social são textos produzidos pelo próprio autor do perfil e de autores diversos, como configuraremos esses espaços virtuais? Autobiográficos e biográficos? Quem escreve a página virtual é o próprio autor do perfil ou múltiplos autores? Com as redes sociais, surge um novo modelo de autobiografia e de biógrafo? Esses e tantos outros questionamentos nortearam nossas investigações e permitiram-nos conhecer um pouco mais sobre as estratégias autobiográficas dos autores virtuais contemporâneos.

  7. ESTADO E NOVOS AGENTES SOCIAIS NA RECONSTRUÇÃO DO ESPAÇO

    Cláudio Barbosa da Costa

    2006-07-01

    Full Text Available Este estudo tem como objetivo principal sistematizar novas questões referentes à complexidade das ações dos agentes sociais na construção do espaço contemporâneo, e que vem interferindo, de maneira significativa, na forma como o Estado vem realizando o processo de intervenção no território. Os eixos analíticos do estudo serão constituídos pelo novo patamar de acumulação que constitui a globalização, os grandes agentes econômicos internacionais e as novas referências da chamada lógica civilizatória, na qual emergem sujeitos sociais que ao buscarem romper com idéia dominante de desenvolvimento e de crescimento, vêm construindo novas formas de lidar com a natureza, com o território e com o trabalho, estabelecendo a alteridade, a partir da luta pela sua legitimidade. A compreensão teórica dos novos movimentos sociais possibilitou um melhor entendimento do papel histórico destes agentes na construção contemporânea do espaço e das suas relações com o vetor ecológico e o desenvolvimento sustentável. Para finalizar, realizamos uma análise histórica das intervenções do Estado brasileiro na construção do território nacional, buscando identificar a complexidade dos agentes da sociedade civil, e as possibilidades e os limites da constituição de um projeto geopolítico através de um novo pacto social, que resguardando as diferenças, consideram-se as territorialidades dos setores sociais historicamente excluídos do processo de

  8. De novo analysis of transcriptome dynamics in the migratory locust during the development of phase traits.

    Shuang Chen

    Full Text Available Locusts exhibit remarkable density-dependent phenotype (phase changes from the solitary to the gregarious, making them one of the most destructive agricultural pests. This phenotype polyphenism arises from a single genome and diverse transcriptomes in different conditions. Here we report a de novo transcriptome for the migratory locust and a comprehensive, representative core gene set. We carried out assembly of 21.5 Gb Illumina reads, generated 72,977 transcripts with N50 2,275 bp and identified 11,490 locust protein-coding genes. Comparative genomics analysis with eight other sequenced insects was carried out to identify the genomic divergence between hemimetabolous and holometabolous insects for the first time and 18 genes relevant to development was found. We further utilized the quantitative feature of RNA-seq to measure and compare gene expression among libraries. We first discovered how divergence in gene expression between two phases progresses as locusts develop and identified 242 transcripts as candidates for phase marker genes. Together with the detailed analysis of deep sequencing data of the 4(th instar, we discovered a phase-dependent divergence of biological investment in the molecular level. Solitary locusts have higher activity in biosynthetic pathways while gregarious locusts show higher activity in environmental interaction, in which genes and pathways associated with regulation of neurotransmitter activities, such as neurotransmitter receptors, synthetase, transporters, and GPCR signaling pathways, are strongly involved. Our study, as the largest de novo transcriptome to date, with optimization of sequencing and assembly strategy, can further facilitate the application of de novo transcriptome. The locust transcriptome enriches genetic resources for hemimetabolous insects and our understanding of the origin of insect metamorphosis. Most importantly, we identified genes and pathways that might be involved in locust development

  9. When less is more: 'slicing' sequencing data improves read decoding accuracy and de novo assembly quality.

    Lonardi, Stefano; Mirebrahim, Hamid; Wanamaker, Steve; Alpert, Matthew; Ciardo, Gianfranco; Duma, Denisa; Close, Timothy J

    2015-09-15

    As the invention of DNA sequencing in the 70s, computational biologists have had to deal with the problem of de novo genome assembly with limited (or insufficient) depth of sequencing. In this work, we investigate the opposite problem, that is, the challenge of dealing with excessive depth of sequencing. We explore the effect of ultra-deep sequencing data in two domains: (i) the problem of decoding reads to bacterial artificial chromosome (BAC) clones (in the context of the combinatorial pooling design we have recently proposed), and (ii) the problem of de novo assembly of BAC clones. Using real ultra-deep sequencing data, we show that when the depth of sequencing increases over a certain threshold, sequencing errors make these two problems harder and harder (instead of easier, as one would expect with error-free data), and as a consequence the quality of the solution degrades with more and more data. For the first problem, we propose an effective solution based on 'divide and conquer': we 'slice' a large dataset into smaller samples of optimal size, decode each slice independently, and then merge the results. Experimental results on over 15 000 barley BACs and over 4000 cowpea BACs demonstrate a significant improvement in the quality of the decoding and the final assembly. For the second problem, we show for the first time that modern de novo assemblers cannot take advantage of ultra-deep sequencing data. Python scripts to process slices and resolve decoding conflicts are available from http://goo.gl/YXgdHT; software Hashfilter can be downloaded from http://goo.gl/MIyZHs stelo@cs.ucr.edu or timothy.close@ucr.edu Supplementary data are available at Bioinformatics online. © The Author 2015. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

  10. Sequential search leads to faster, more efficient fragment-based de novo protein structure prediction.

    de Oliveira, Saulo H P; Law, Eleanor C; Shi, Jiye; Deane, Charlotte M

    2018-04-01

    Most current de novo structure prediction methods randomly sample protein conformations and thus require large amounts of computational resource. Here, we consider a sequential sampling strategy, building on ideas from recent experimental work which shows that many proteins fold cotranslationally. We have investigated whether a pseudo-greedy search approach, which begins sequentially from one of the termini, can improve the performance and accuracy of de novo protein structure prediction. We observed that our sequential approach converges when fewer than 20 000 decoys have been produced, fewer than commonly expected. Using our software, SAINT2, we also compared the run time and quality of models produced in a sequential fashion against a standard, non-sequential approach. Sequential prediction produces an individual decoy 1.5-2.5 times faster than non-sequential prediction. When considering the quality of the best model, sequential prediction led to a better model being produced for 31 out of 41 soluble protein validation cases and for 18 out of 24 transmembrane protein cases. Correct models (TM-Score > 0.5) were produced for 29 of these cases by the sequential mode and for only 22 by the non-sequential mode. Our comparison reveals that a sequential search strategy can be used to drastically reduce computational time of de novo protein structure prediction and improve accuracy. Data are available for download from: http://opig.stats.ox.ac.uk/resources. SAINT2 is available for download from: https://github.com/sauloho/SAINT2. saulo.deoliveira@dtc.ox.ac.uk. Supplementary data are available at Bioinformatics online.

  11. Optimizing and benchmarking de novo transcriptome sequencing: from library preparation to assembly evaluation.

    Hara, Yuichiro; Tatsumi, Kaori; Yoshida, Michio; Kajikawa, Eriko; Kiyonari, Hiroshi; Kuraku, Shigehiro

    2015-11-18

    RNA-seq enables gene expression profiling in selected spatiotemporal windows and yields massive sequence information with relatively low cost and time investment, even for non-model species. However, there remains a large room for optimizing its workflow, in order to take full advantage of continuously developing sequencing capacity. Transcriptome sequencing for three embryonic stages of Madagascar ground gecko (Paroedura picta) was performed with the Illumina platform. The output reads were assembled de novo for reconstructing transcript sequences. In order to evaluate the completeness of transcriptome assemblies, we prepared a reference gene set consisting of vertebrate one-to-one orthologs. To take advantage of increased read length of >150 nt, we demonstrated shortened RNA fragmentation time, which resulted in a dramatic shift of insert size distribution. To evaluate products of multiple de novo assembly runs incorporating reads with different RNA sources, read lengths, and insert sizes, we introduce a new reference gene set, core vertebrate genes (CVG), consisting of 233 genes that are shared as one-to-one orthologs by all vertebrate genomes examined (29 species)., The completeness assessment performed by the computational pipelines CEGMA and BUSCO referring to CVG, demonstrated higher accuracy and resolution than with the gene set previously established for this purpose. As a result of the assessment with CVG, we have derived the most comprehensive transcript sequence set of the Madagascar ground gecko by means of assembling individual libraries followed by clustering the assembled sequences based on their overall similarities. Our results provide several insights into optimizing de novo RNA-seq workflow, including the coordination between library insert size and read length, which manifested in improved connectivity of assemblies. The approach and assembly assessment with CVG demonstrated here would be applicable to transcriptome analysis of other species as

  12. A «educação nova» e o estado novo

    Alho, Albérico Afonso Costa

    2008-01-01

    A reforma do ensino técnico foi filha das mudanças que espreitavam no Portugal do pós-guerra. Apesar do espartilho imposto à liberdade de expressão, quase todos os sectores sociais vão tomar posição sobre os novos caminhos enunciados para o ensino profissional. Das associações patronais aos sectores oposicionistas, ninguém ficou indiferente às novas propostas que emergiam da reforma.

  13. Anterior abdominal wall leiomyoma arising de novo in a fertile women: A case report

    Cho, Je Young; Woo, Ji Young; Hong, Hye Suk; Yang, Ik; Lee, Yul; Hwang, Ji Young; Kim, Han Myun; Shin, Mi Kyung

    2016-01-01

    Abdominal wall leiomyoma arising de novo is very rare, hence the reported imaging findings of this disease are also rare. We reported the case of a 33-year-old woman who presented with an abdominal wall mass without antecedent gynecological surgeries. The initial abdominal computed tomography (CT) showed thickening of the left rectus abdominis and the loss of intervening fat between the rectus abdominis and the lateral abdominal muscles. After 8 months, the follow-up contrast-enhanced CT and ultrasonography (US) showed a lentiform-shaped mass with isodensity to the adjacent muscles. The US-guided biopsy was consistent with leiomyoma

  14. Anterior abdominal wall leiomyoma arising de novo in a fertile women: A case report

    Cho, Je Young; Woo, Ji Young; Hong, Hye Suk; Yang, Ik; Lee, Yul; Hwang, Ji Young; Kim, Han Myun; Shin, Mi Kyung [Hallym University College of Medicine, Kangnam Sacred Heart Hospital, Seoul (Korea, Republic of)

    2016-01-15

    Abdominal wall leiomyoma arising de novo is very rare, hence the reported imaging findings of this disease are also rare. We reported the case of a 33-year-old woman who presented with an abdominal wall mass without antecedent gynecological surgeries. The initial abdominal computed tomography (CT) showed thickening of the left rectus abdominis and the loss of intervening fat between the rectus abdominis and the lateral abdominal muscles. After 8 months, the follow-up contrast-enhanced CT and ultrasonography (US) showed a lentiform-shaped mass with isodensity to the adjacent muscles. The US-guided biopsy was consistent with leiomyoma.

  15. Chromosome aberrations and oncogene alterations in atomic bomb related leukemias - different mechanisms from de novo leukemias

    Tanaka, K.; Tanaka, H.; Kamada, N.

    2003-01-01

    It is well known that leukemia occurred more frequently among atomic bomb survivors. In 132 atomic bomb related ( AB- related) leukemia patients during 1978-1999, 33 acute myeloid leukemia (AML)/myelodysplastic syndrome (MDS) patients had their exposure doses of more than 1Gy (DS86). Chromosome aberrations of the 33 patients were compared with those from 588 de novo AML/MDS patients who had been bone before August 1945 as control. No FAB M3 patient was observed in the exposed group. Most AB-related AML preceded a long term of MDS stage. Twenty seven of the 33 patients showed complex types of chromosome aberrations with more than three chromosomes involving chromosomes 5,7 and 11. The number of chromosomes abnormality per cell in the AB-related leukemia was 3.78 while 0.92 in de novo leukemia. Only one of the 33 patients had normal karyotype, while 44.1% in de novo leukemia patients. Translocations of chromosome 11 at 11q13 to 11q23 and deletion/ loss of chromosome 20 were frequently observed in AB-related leukemia. No leukemia-type specific translocations such as t(8;21),t(15;17) and 11q23 were found in the 33 AB-related leukemia patients. Furthermore, molecular analyses using FISH and PCR-SSCP revealed the presence of breakpoint located outside of MLL gene in the patients with translocations at 11q22-23 and DNA base derangements of RUNT domain of AML1(CBF β 2)gene with AML/MDS patients without t(8;21) and with a high dose of exposure. These results suggest that AB-related leukemia derives from an exposed pluripotent hematopoietic stem cell which has been preserved for a long time in the bone marrow, expressing high genetic instability such as microsatellite instability. On the other hand, de novo leukemia develops from a committed hematopoietic stem cell and shows simple and leukemia-type specific chromosome aberrations. These findings are important for understanding mechanisms for radiation-induced leukemia

  16. Everolimus Initiation With Early Calcineurin Inhibitor Withdrawal in De Novo Heart Transplant Recipients

    Andreassen, A K; Andersson, B; Gustafsson, F

    2016-01-01

    In a randomized, open-label trial, de novo heart transplant recipients were randomized to everolimus (3-6 ng/mL) with reduced-exposure calcineurin inhibitor (CNI; cyclosporine) to weeks 7-11 after transplant, followed by increased everolimus exposure (target 6-10 ng/mL) with cyclosporine withdrawal...... events occurred in 37.3% and 19.6% of everolimus- and CNI-treated patients, respectively (p = 0.078). These results suggest that early CNI withdrawal after heart transplantation supported by everolimus, mycophenolic acid and steroids with lymphocyte-depleting induction is safe at intermediate follow...

  17. A Psicologia no novo contexto mundial Psychology in the new world context

    Carla Faria Leitão

    2003-12-01

    Full Text Available Profundas alterações no mundo contemporâneo criaram um novo contexto de produção científica, caracterizado pela desconstrução de antigas teorias e pela construção de uma nova rede de conhecimentos. Neste artigo, analisamos algumas teorias recentemente desenvolvidas nas ciências sociais e na filosofia que compõem esta rede: as teorias pós-modernas, as teorias da modernização reflexiva e a teoria da Revolução da Tecnologia da Informação. Visamos com isto munir os psicólogos de conhecimentos advindos de outros campos disciplinares que sirvam como ponto de partida para a análise das mudanças subjetivas introduzidas pelo novo cenário mundial. Argumentamos que a psicologia ainda observa o homem contemporâneo a partir de categorias tradicionais, desconsiderando que transformações sociais profundas geram impactos psicológicos não menos profundos e dificilmente captáveis a partir de antigos referenciais. Concluímos que um conhecimento mais aprofundado das transformações radicais em curso no mundo atual pode ajudar os psicólogos a rever suas antigas certezas a respeito do homem e a aventurar novos olhares sobre os também novos fenômenos humanos.Profound changes in the contemporary world have created a new context for scientific work, characterised by the deconstruction of old theories and the construction of a new network of knowledge. In this article, we analyse a few theories recently developed in the social sciences and in philosophy that make up this network: post-modernist theories, reflexive modernisation theories and Information Technology Revolution theory. In this way, we aim to provide psychologists with insights produced in other fields of knowledge that can serve as a starting point for the analysis of the subjective changes introduced by the new global scenario. We argue that psychology still observes contemporary man on the basis of traditional categories, ignoring the fact that profound social changes

  18. Novos táxons de Lamiinae (Coleoptera, Cerambycidae da América do Sul

    Maria Helena M. Galileo

    2012-06-01

    Full Text Available Novos táxons descritos: Acanthoderini, Nesozineus osorioensis sp. nov., do Brasil (Rio Grande do Sul; Calliini, Drycothaea clara sp. nov., do Brasil (Rondônia e Drycothaea hovorei sp. nov., do Equador (Napo; Forsteriini, Itacolomi gen. nov., espécie-tipo I. letiziae sp. nov., do Brasil (Minas Gerais; Yapyguara gen. nov., espécie-tipo Y. fusca sp. nov., da Bolívia (Santa Cruz; Xenofreini, Xenofrea zischkai sp. nov., do Equador (Napo e da Bolívia (Santa Cruz.

  19. Identification of de Novo Fanconi Anemia in Younger Patients With Newly Diagnosed Acute Myeloid Leukemia

    2016-05-13

    Childhood Acute Erythroleukemia (M6); Childhood Acute Megakaryocytic Leukemia (M7); Childhood Acute Minimally Differentiated Myeloid Leukemia (M0); Childhood Acute Monoblastic Leukemia (M5a); Childhood Acute Monocytic Leukemia (M5b); Childhood Acute Myeloblastic Leukemia With Maturation (M2); Childhood Acute Myeloblastic Leukemia Without Maturation (M1); Childhood Acute Myelomonocytic Leukemia (M4); Childhood Myelodysplastic Syndromes; Chronic Myelomonocytic Leukemia; de Novo Myelodysplastic Syndromes; Fanconi Anemia; Refractory Anemia; Refractory Anemia With Excess Blasts; Refractory Anemia With Excess Blasts in Transformation; Refractory Anemia With Ringed Sideroblasts; Secondary Myelodysplastic Syndromes; Untreated Childhood Acute Myeloid Leukemia and Other Myeloid Malignancies

  20. De novo assembly of plant body plan: a step ahead of Deadpool

    Kareem, Abdul; Radhakrishnan, Dhanya; Sondhi, Yash; Aiyaz, Mohammed; Roy, Merin V.; Sugimoto, Kaoru; Prasad, Kalika

    2016-01-01

    Abstract While in the movie Deadpool it is possible for a human to recreate an arm from scratch, in reality plants can even surpass that. Not only can they regenerate lost parts, but also the whole plant body can be reborn from a few existing cells. Despite the decades old realization that plant cells possess the ability to regenerate a complete?shoot and root system, it is only now that the underlying mechanisms are being unraveled. De novo plant regeneration involves the initiation of regen...

  1. O Estado Novo, o rádio e seus órgãos reguladores

    Othon Jambeiro

    2003-01-01

    Full Text Available This paper analyses the Brazilian broadcasting regulation in the 1935-1945 period, including the Estado Novo coup d'etat preparation, its implementation, consolidation and fall. It is taken into account the historical context and the national and international changes which occured in that period. It also analyses the rules for broadcasting and mass communication media, particularly on control issues. Functions, structure and acting of the Departmento de Imprensa e Propaganda - DIP area studied, in the perspective of understanding the role of the most important intelligence agency of the Vargas government.

  2. De novo development of eosinophilic myocarditis with left ventricular assist device support as bridge to transplant.

    Pereira, Naveen L; Park, Soon J; Daly, Richard C; Kushwaha, Sudhir S; Edwards, William D

    2010-10-01

    The de novo development of myocarditis during left ventricular assist device support for dilated cardiomyopathy has not been previously described. We report a case of severe eosinophilic myocarditis associated with the use of leukotriene-receptor antagonist montelukast that developed during left ventricular assist device support accompanied by intra-device thrombus formation that was hemodynamically tolerated and subsequently discovered in the explanted heart. There may be no visible change in cardiac function as assessed by echocardiography, but the diagnosis should be entertained with the development of peripheral eosinophilia. Copyright © 2010 The Society of Thoracic Surgeons. Published by Elsevier Inc. All rights reserved.

  3. De novo transcriptome assembly associated with fumonisin production by the rice pathogen Fusarium fujikuroi

    Keerthi S. Guruge

    2018-06-01

    Full Text Available The present study employed a next-generation sequencing method to assemble a de novo transcriptome database designed to distinguish gene expression changes exhibited by the fumonisin-producing fungus Fusarium fujikuroi when grown under ‘fumonisin-producing’ compared to ‘non-fumonisin-producing’ conditions. The raw data of this study have been deposited at DNA Data Bank of Japan (DDBJ under the accession ID DRA006146. Keywords: Fusarium fujikuroi, Fumonisin, Next-generation sequencing, Transcriptome, Gene-expression

  4. Analysis of the NovoTwist pen needle in comparison with conventional screw-thread needles.

    Aye, Tandy

    2011-11-01

    Administration of insulin via a pen device may be advantageous over a vial and syringe system. Hofman and colleagues introduce a new insulin pen needle, the NovoTwist, to simplify injections to a small group of children and adolescents. Their overall preferences and evaluation of the handling of the needle are reported in the study. This new needle has the potential to ease administration of insulin via a pen device that may increase both the use of a pen device and adherence to insulin therapy. © 2011 Diabetes Technology Society.

  5. A de novo designed monomeric, compact three helix bundle protein on a carbohydrate template

    Malik, Leila; Nygård, Jesper; Christensen, Niels Johan

    2015-01-01

    De novo design and chemical synthesis of proteins and of other artificial structures, which mimic them, is a central strategy for understanding protein folding and for accessing proteins with novel functions. We have previously described carbohydrates as templates for the assembly of artificial...... the template could facilitate protein folding. Here we report the design and synthesis of 3-helix bundle carboproteins on deoxy-hexopyranosides. The carboproteins were analyzed by CD, AUC, SAXS, and NMR, which revealed the formation of the first compact, and folded monomeric carboprotein distinctly different...

  6. De-novo discovery of differentially abundant transcription factor binding sites including their positional preference.

    Keilwagen, Jens; Grau, Jan; Paponov, Ivan A; Posch, Stefan; Strickert, Marc; Grosse, Ivo

    2011-02-10

    Transcription factors are a main component of gene regulation as they activate or repress gene expression by binding to specific binding sites in promoters. The de-novo discovery of transcription factor binding sites in target regions obtained by wet-lab experiments is a challenging problem in computational biology, which has not been fully solved yet. Here, we present a de-novo motif discovery tool called Dispom for finding differentially abundant transcription factor binding sites that models existing positional preferences of binding sites and adjusts the length of the motif in the learning process. Evaluating Dispom, we find that its prediction performance is superior to existing tools for de-novo motif discovery for 18 benchmark data sets with planted binding sites, and for a metazoan compendium based on experimental data from micro-array, ChIP-chip, ChIP-DSL, and DamID as well as Gene Ontology data. Finally, we apply Dispom to find binding sites differentially abundant in promoters of auxin-responsive genes extracted from Arabidopsis thaliana microarray data, and we find a motif that can be interpreted as a refined auxin responsive element predominately positioned in the 250-bp region upstream of the transcription start site. Using an independent data set of auxin-responsive genes, we find in genome-wide predictions that the refined motif is more specific for auxin-responsive genes than the canonical auxin-responsive element. In general, Dispom can be used to find differentially abundant motifs in sequences of any origin. However, the positional distribution learned by Dispom is especially beneficial if all sequences are aligned to some anchor point like the transcription start site in case of promoter sequences. We demonstrate that the combination of searching for differentially abundant motifs and inferring a position distribution from the data is beneficial for de-novo motif discovery. Hence, we make the tool freely available as a component of the open

  7. S1P Signaling and De Novo Biosynthesis in Blood Pressure Homeostasis

    Cantalupo, Anna

    2016-01-01

    Initially discovered as abundant components of eukaryotic cell membranes, sphingolipids are now recognized as important bioactive signaling molecules that modulate a variety of cellular functions, including those relevant to cancer and immunologic, inflammatory, and cardiovascular disorders. In this review, we discuss recent advances in our understanding of the role of sphingosine-1-phosphate (S1P) receptors in the regulation of vascular function, and focus on how de novo biosynthesized sphingolipids play a role in blood pressure homeostasis. The therapeutic potential of new drugs that target S1P signaling is also discussed. PMID:27317800

  8. Visões do Novo Mundo na pintura religiosa da Renascença

    Yobenj Aucardo Chicangana-Bayona

    2013-06-01

    Full Text Available Este artigo aborda o estudo dos elementos familiares aos exploradores europeus que estabeleceram suas primeiras coordenadas a partir de analogias com o Paraíso e com Cocanha para assimilar e interpretar pictoricamente o Novo Mundo, uma realidade antes desconhecida, e integrá-la à cultura ocidental. Assim, o Cristianismo é muito importante, porque vai oferecer o referencial - em um primeiro momento - para estabelecer a imagem do índio em episódios religiosos da cultura ocidental europeia. Uma imagem que ora será positiva, vinculada ao paraíso, e ora negativa, sendo vinculada ao inferno.

  9. A inclusão na perspectiva do novo paradigma da ciência

    Reinoldo Marqueza

    2011-12-01

    Full Text Available O estudo aborda o processo de transição paradigmática da ciência moderna para a ciência pós-moderna. Salienta as características do paradigma atual, a crise desse paradigma e aponta os contornos do paradigma emergente na perspectiva do sociólogo Boaventura Sousa Santos. Refere a Educação Inclusiva como um novo processo de produção e de apropriação do conhecimento e como uma nova forma de estar na relação.Palavras-chave: Paradigma. Conhecimento. Educação Inclusiva.

  10. Novos biomateriais poliméricos para implantes ósseos

    Ferreira, Sara Cristina Silva

    2016-01-01

    Os danos dos tecidos ósseos representam um problema importante de saúde em todo o mundo. Um dos componentes principais utilizados em engenharia de tecidos são os materiais de suporte, estruturas 3D formadas por matrizes porosas, que visam proporcionar o desenvolvimento do novo tecido. Muitas das matrizes poliméricas porosas (espumas) utilizadas em aplicações médicas são constituídas por poliuretanos, sendo estes produzidos a partir de isocianatos (produtos tóxicos) e polióis. Assim, surge a n...

  11. SV2: accurate structural variation genotyping and de novo mutation detection from whole genomes.

    Antaki, Danny; Brandler, William M; Sebat, Jonathan

    2018-05-15

    Structural variation (SV) detection from short-read whole genome sequencing is error prone, presenting significant challenges for population or family-based studies of disease. Here, we describe SV2, a machine-learning algorithm for genotyping deletions and duplications from paired-end sequencing data. SV2 can rapidly integrate variant calls from multiple structural variant discovery algorithms into a unified call set with high genotyping accuracy and capability to detect de novo mutations. SV2 is freely available on GitHub (https://github.com/dantaki/SV2). jsebat@ucsd.edu. Supplementary data are available at Bioinformatics online.

  12. A comprehensive cytogenetic classification of 1466 Chinese patients with de novo acute lymphoblastic leukemia.

    Li, Xin; Li, Juan; Hu, Yanjie; Xie, Wei; Du, Wen; Liu, Wei; Li, Xiaoqing; Chen, Xiangjun; Li, Hongrui; Wang, Junfeng; Zhang, Lannan; Huang, Shiang

    2012-06-01

    Cytogenetics and molecular cytogenetics of 1466 Chinese patients with de novo acute lymphoblastic leukemia (ALL) were studied. Cytogenetic results were available in 1175 patients. Cross-correlations of 23 subclasses of cytogenetic abnormalities were described. Childhood cases had higher incidences of normal karyotype, t(1;19), +8, 12q-, +21, +22 and high hyperdiploidy with 51-65 chromosomes, and lower incidences of t(9;22) and -5/5q- than adult ones (all pcytogenetic subclasses with immunophenotyping subgroups of ALL were studied. Our study presents the cytogenetic characteristics of a large series of Chinese ALL patients. Copyright © 2011 Elsevier Ltd. All rights reserved.

  13. A Presença da Gastronomia Alemã na Hotelaria de Novo Hamburgo, RS

    mary sandra ashton; Ana Cristina Müller

    2013-01-01

    Esse estudo tem por objetivo investigar os elementos e características da gastronomia alemã presentes nos serviços hoteleiros de Novo Hamburgo. Tem ênfase na gastronomia, evidenciando e (re) conhecendo os hábitos e costumes alimentares trazidos pela imigração germânica e sua relação com a oferta de alimentos nos hotéis da cidade, como diferencial no quesito turismo cultural. Para tanto, foram utilizados autores reconhe...

  14. Emergence, Retention and Selection: A Trilogy of Origination for Functional De Novo Proteins from Ancestral LncRNAs in Primates.

    Jia-Yu Chen

    2015-07-01

    Full Text Available While some human-specific protein-coding genes have been proposed to originate from ancestral lncRNAs, the transition process remains poorly understood. Here we identified 64 hominoid-specific de novo genes and report a mechanism for the origination of functional de novo proteins from ancestral lncRNAs with precise splicing structures and specific tissue expression profiles. Whole-genome sequencing of dozens of rhesus macaque animals revealed that these lncRNAs are generally not more selectively constrained than other lncRNA loci. The existence of these newly-originated de novo proteins is also not beyond anticipation under neutral expectation, as they generally have longer theoretical lifespan than their current age, due to their GC-rich sequence property enabling stable ORFs with lower chance of non-sense mutations. Interestingly, although the emergence and retention of these de novo genes are likely driven by neutral forces, population genetics study in 67 human individuals and 82 macaque animals revealed signatures of purifying selection on these genes specifically in human population, indicating a proportion of these newly-originated proteins are already functional in human. We thus propose a mechanism for creation of functional de novo proteins from ancestral lncRNAs during the primate evolution, which may contribute to human-specific genetic novelties by taking advantage of existed genomic contexts.

  15. Critical importance of the de novo pyrimidine biosynthesis pathway for Trypanosoma cruzi growth in the mammalian host cell cytoplasm

    Hashimoto, Muneaki; Morales, Jorge; Fukai, Yoshihisa; Suzuki, Shigeo; Takamiya, Shinzaburo; Tsubouchi, Akiko; Inoue, Syou; Inoue, Masayuki; Kita, Kiyoshi; Harada, Shigeharu; Tanaka, Akiko; Aoki, Takashi; Nara, Takeshi

    2012-01-01

    Highlights: ► We established Trypanosoma cruzi lacking the gene for carbamoyl phosphate synthetase II. ► Disruption of the cpsII gene significantly reduced the growth of epimastigotes. ► In particular, the CPSII-null mutant severely retarded intracellular growth. ► The de novo pyrimidine pathway is critical for the parasite growth in the host cell. -- Abstract: The intracellular parasitic protist Trypanosoma cruzi is the causative agent of Chagas disease in Latin America. In general, pyrimidine nucleotides are supplied by both de novo biosynthesis and salvage pathways. While epimastigotes—an insect form—possess both activities, amastigotes—an intracellular replicating form of T. cruzi—are unable to mediate the uptake of pyrimidine. However, the requirement of de novo pyrimidine biosynthesis for parasite growth and survival has not yet been elucidated. Carbamoyl-phosphate synthetase II (CPSII) is the first and rate-limiting enzyme of the de novo biosynthetic pathway, and increased CPSII activity is associated with the rapid proliferation of tumor cells. In the present study, we showed that disruption of the T. cruzicpsII gene significantly reduced parasite growth. In particular, the growth of amastigotes lacking the cpsII gene was severely suppressed. Thus, the de novo pyrimidine pathway is important for proliferation of T. cruzi in the host cell cytoplasm and represents a promising target for chemotherapy against Chagas disease.

  16. Whole Exome Sequencing for a Patient with Rubinstein-Taybi Syndrome Reveals de Novo Variants besides an Overt CREBBP Mutation

    Hee Jeong Yoo

    2015-03-01

    Full Text Available Rubinstein-Taybi syndrome (RSTS is a rare condition with a prevalence of 1 in 125,000–720,000 births and characterized by clinical features that include facial, dental, and limb dysmorphology and growth retardation. Most cases of RSTS occur sporadically and are caused by de novo mutations. Cytogenetic or molecular abnormalities are detected in only 55% of RSTS cases. Previous genetic studies have yielded inconsistent results due to the variety of methods used for genetic analysis. The purpose of this study was to use whole exome sequencing (WES to evaluate the genetic causes of RSTS in a young girl presenting with an Autism phenotype. We used the Autism diagnostic observation schedule (ADOS and Autism diagnostic interview revised (ADI-R to confirm her diagnosis of Autism. In addition, various questionnaires were used to evaluate other psychiatric features. We used WES to analyze the DNA sequences of the patient and her parents and to search for de novo variants. The patient showed all the typical features of Autism, WES revealed a de novo frameshift mutation in CREBBP and de novo sequence variants in TNC and IGFALS genes. Mutations in the CREBBP gene have been extensively reported in RSTS patients, while potential missense mutations in TNC and IGFALS genes have not previously been associated with RSTS. The TNC and IGFALS genes are involved in central nervous system development and growth. It is possible for patients with RSTS to have additional de novo variants that could account for previously unexplained phenotypes.

  17. A case of de novo duplication of 15q24-q26.3

    Hye Ran Kim

    2011-06-01

    Full Text Available Distal duplication, or trisomy 15q, is an extremely rare chromosomal disorder characterized by prenatal and postnatal overgrowth, mental retardation, and craniofacial malformations. Additional abnormalities typically include an unusually short neck, malformations of the fingers and toes, scoliosis and skeletal malformations, genital abnormalities, particularly in affected males, and, in some cases, cardiac defects. The range and severity of symptoms and physical findings may vary from case to case, depending upon the length and location of the duplicated portion of chromosome 15q. Most reported cases of duplication of the long arm of chromosome 15 frequently have more than one segmental imbalance resulting from unbalanced translocations involving chromosome 15 and deletions in another chromosome, as well as other structural chromosomal abnormalities. We report a female newborn with a de novo duplication, 15q24- q26.3, showing intrauterine overgrowth, a narrow asymmetric face with down-slanting palpebral fissures, a large, prominent nose, and micrognathia, arachnodactyly, camptodactyly, congenital heart disease, hydronephrosis, and hydroureter. Chromosomal analysis showed a 46,XX,inv(9(p12q13,dup(15(q24q26.3. Array comparative genomic hybridization analysis revealed a gain of 42 clones on 15q24-q26.3. This case represents the only reported patient with a de novo 15q24-q26.3 duplication that did not result from an unbalanced translocation and did not have a concomitant monosomic component in Korea.

  18. De novo transcriptome assembly of drought tolerant CAM plants, Agave deserti and Agave tequilana.

    Gross, Stephen M; Martin, Jeffrey A; Simpson, June; Abraham-Juarez, María Jazmín; Wang, Zhong; Visel, Axel

    2013-08-19

    Agaves are succulent monocotyledonous plants native to xeric environments of North America. Because of their adaptations to their environment, including crassulacean acid metabolism (CAM, a water-efficient form of photosynthesis), and existing technologies for ethanol production, agaves have gained attention both as potential lignocellulosic bioenergy feedstocks and models for exploring plant responses to abiotic stress. However, the lack of comprehensive Agave sequence datasets limits the scope of investigations into the molecular-genetic basis of Agave traits. Here, we present comprehensive, high quality de novo transcriptome assemblies of two Agave species, A. tequilana and A. deserti, built from short-read RNA-seq data. Our analyses support completeness and accuracy of the de novo transcriptome assemblies, with each species having a minimum of approximately 35,000 protein-coding genes. Comparison of agave proteomes to those of additional plant species identifies biological functions of gene families displaying sequence divergence in agave species. Additionally, a focus on the transcriptomics of the A. deserti juvenile leaf confirms evolutionary conservation of monocotyledonous leaf physiology and development along the proximal-distal axis. Our work presents a comprehensive transcriptome resource for two Agave species and provides insight into their biology and physiology. These resources are a foundation for further investigation of agave biology and their improvement for bioenergy development.

  19. Delayed manifestation and transmission bias of de novo chromosome mutations. Their relevance for radiation health effect

    Sasaki, Masao S.

    2006-01-01

    The origin and transmission of de novo chromosome mutations were reviewed on the basis of our chromosome studies in retinoblastoma patients and male infertility. In a series of 264 sporadic retinoblastoma families, gross chromosome rearrangements involving the RB1 locus were identified in 23 cases (8.7%), of which 16 were non-mosaic and 7 were mosaic mutations. The newly formed chromosome mutations, whether they were non-mosaic or mosaic, had a strong bias towards paternally derived chromosome, indicating that they shared a common mechanism where a pre-mutational event or instability is carried over to zygote by sperm and manifested as gross chromosome mutation at the early stages of development. The de novo chromosome mutations are preferentially transmitted through female carriers. This transmission bias is consistent with the finding of higher frequencies of translocation carriers in infertile men (7.69% versus 0.27% in general populations) in whom meiotic progression is severely suppressed, possibly through activation of meiotic checkpoints. Such a meiotic surveillance mechanism may minimize the spreading of newly-arisen chromosome mutations in populations. A quantitative model of meiotic surveillance mechanism is proposed and successfully applied to the published data on ''humped'' dose-response curves for radiation-induced spermatogonial reciprocal translocations in several mammalian species. (author)

  20. De novo biosynthesis of vanillin in fission yeast (Schizosaccharomyces pombe) and baker's yeast (Saccharomyces cerevisiae).

    Hansen, Esben H; Møller, Birger Lindberg; Kock, Gertrud R; Bünner, Camilla M; Kristensen, Charlotte; Jensen, Ole R; Okkels, Finn T; Olsen, Carl E; Motawia, Mohammed S; Hansen, Jørgen

    2009-05-01

    Vanillin is one of the world's most important flavor compounds, with a global market of 180 million dollars. Natural vanillin is derived from the cured seed pods of the vanilla orchid (Vanilla planifolia), but most of the world's vanillin is synthesized from petrochemicals or wood pulp lignins. We have established a true de novo biosynthetic pathway for vanillin production from glucose in Schizosaccharomyces pombe, also known as fission yeast or African beer yeast, as well as in baker's yeast, Saccharomyces cerevisiae. Productivities were 65 and 45 mg/liter, after introduction of three and four heterologous genes, respectively. The engineered pathways involve incorporation of 3-dehydroshikimate dehydratase from the dung mold Podospora pauciseta, an aromatic carboxylic acid reductase (ACAR) from a bacterium of the Nocardia genus, and an O-methyltransferase from Homo sapiens. In S. cerevisiae, the ACAR enzyme required activation by phosphopantetheinylation, and this was achieved by coexpression of a Corynebacterium glutamicum phosphopantetheinyl transferase. Prevention of reduction of vanillin to vanillyl alcohol was achieved by knockout of the host alcohol dehydrogenase ADH6. In S. pombe, the biosynthesis was further improved by introduction of an Arabidopsis thaliana family 1 UDP-glycosyltransferase, converting vanillin into vanillin beta-D-glucoside, which is not toxic to the yeast cells and thus may be accumulated in larger amounts. These de novo pathways represent the first examples of one-cell microbial generation of these valuable compounds from glucose. S. pombe yeast has not previously been metabolically engineered to produce any valuable, industrially scalable, white biotech commodity.