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Sample records for models line profiles

  1. Modelling of asymmetric nebulae. II. Line profiles

    CERN Document Server

    Morisset, C

    2006-01-01

    We present a tool, VELNEB_3D, which can be applied to the results of 3D photoionization codes to generate emission line profiles, position-velocity maps and 3D maps in any emission line by assuming an arbitrary velocity field. We give a few examples, based on our pseudo-3D photoionization code NEBU_3D (Morisset, Stasinska and Pena, 2005) which show the potentiality and usefulness of our tool. One example shows how complex line profiles can be obtained even with a simple expansion law if the nebula is bipolar and the slit slightly off-center. Another example shows different ways to produce line profiles that could be attributed to a turbulent velocity field while there is no turbulence in the model. A third example shows how, in certain circumstances, it is possible to discriminate between two very different geometrical structures -- here a face-on blister and its ``spherical impostor'' -- when using appropriate high resolution spectra. Finally, we show how our tool is able to generate 3D maps, similar to the ...

  2. Line profile modelling for multi-pixel CZT detectors

    Science.gov (United States)

    Chattopadhyay, T.; Vadawale, S. V.; Rao, A. R.; Bhattacharya, D.; Mithun, N. P. S.; Bhalerao, V.

    2016-07-01

    Cadmium Zinc Telluride (CZT) detectors have been the mainstay for hard X-ray astronomy for its high quantum efficiency, fine energy resolution, near room temperature operation, and radiation hardness. In order to fully utilize the spectroscopic capabilities of CZT detectors, it is important to generate accurate response matrix, which in turn requires precise modelling of the line profiles for the CZT detectors. We have developed a numerical model taking into account the mobility and lifetime of the charge carriers and intrpixel charge sharing for the CZT detectors. This paper describes the details of the modelling along with the experimental measurements of mobility, lifetime and charge sharing fractions for the CZT detector modules of thickness of 5 mm and 2.5 mm pixel size procured from Orbotech Medical Solutions (same modules used in AstroSat-CZTI).

  3. Modelling Chromospheric Line Profiles in NGC2808: Evidence of Mass Loss from RGB Stars

    CERN Document Server

    Mauas, P J D; Pasquini, L

    2006-01-01

    In this study we test the possibility that the asymmetry in the profiles of the H-alpha and Ca II K lines in red giant stars is due to the presence of an active chromosphere rather than to mass loss. To this end, we compare line profiles computed using relevant model chromospheres to profiles of the H-alpha and Ca II K lines observed in five red giant stars of the globular cluster NGC 2808. The spectra were taken with FLAMES during Science Verification, using the UVES mode at high resolution (R=43,000) for the H-alpha line, and GIRAFFE in MEDUSA mode (R=20,000) for the Ca II K line. We find that the observed profiles are better described if a negative (outward) velocity field is included in the model chromospheres. This leads to mass loss rates of a few 10**(-9) solar masses per year, very close to the requirements of the stellar evolution theory.

  4. Spectral Line-Shape Model to Replace the Voigt Profile in Spectroscopic Databases

    Science.gov (United States)

    Lisak, Daniel; Ngo, Ngoc Hoa; Tran, Ha; Hartmann, Jean-Michel

    2014-06-01

    The standard description of molecular line shapes in spectral databases and radiative transfer codes is based on the Voigt profile. It is well known that its simplified assumptions of absorber free motion and independence of collisional parameters from absorber velocity lead to systematic errors in analysis of experimental spectra, and retrieval of gas concentration. We demonstrate1,2 that the partially correlated quadratic speed-dependent hardcollision profile3. (pCqSDHCP) is a good candidate to replace the Voigt profile in the next generations of spectroscopic databases. This profile takes into account the following physical effects: the Doppler broadening, the pressure broadening and shifting of the line, the velocity-changing collisions, the speed-dependence of pressure broadening and shifting, and correlations between velocity- and phase/state-changing collisions. The speed-dependence of pressure broadening and shifting is incorporated into the pCqSDNGP in the so-called quadratic approximation. The velocity-changing collisions lead to the Dicke narrowing effect; however in many cases correlations between velocityand phase/state-changing collisions may lead to effective reduction of observed Dicke narrowing. The hard-collision model of velocity-changing collisions is also known as the Nelkin-Ghatak model or Rautian model. Applicability of the pCqSDHCP for different molecular systems was tested on calculated and experimental spectra of such molecules as H2, O2, CO2, H2O in a wide span of pressures. For all considered systems, pCqSDHCP is able to describe molecular spectra at least an order of magnitude better than the Voigt profile with all fitted parameters being linear with pressure. In the most cases pCqSDHCP can reproduce the reference spectra down to 0.2% or better, which fulfills the requirements of the most demanding remote-sensing applications. An important advantage of pCqSDHCP is that a fast algorithm for its computation was developedab4,5 and allows

  5. Modelling chromospheric line profiles as diagnostics of velocity fields in {\\omega} Centauri red giant stars

    CERN Document Server

    Vieytes, M; Cacciari, C; Origlia, L; Pancino, E

    2010-01-01

    Context. Mass loss of ~0.1-0.3 M$_{\\odot}$ from Population II red giant stars (RGB) is a requirement of stellar evolution theory in order to account for several observational evidences in globular clusters. Aims. The aim of this study is to detect the presence of outward velocity fields, which are indicative of mass outflow, in six luminous red giant stars of the stellar cluster {\\omega} Cen. Methods. We compare synthetic line profiles computed using relevant model chromospheres to observed profiles of the H{\\alpha} and Ca II K lines. The spectra were taken with UVES (R=45,000) and the stars were selected so that three of them belong to the metal-rich population and three to the metal-poor population, and sample as far down as 1 to 2.5 magnitudes fainter than the respective RGB tips. Results. We do indeed reveal the presence of low-velocity outward motions in four of our six targets, without any apparent correlation with astrophysical parameters. Conclusions. This provides direct evidence that outward velocit...

  6. Transcriptome Profiling Reveals Degree of Variability in Induced Pluripotent Stem Cell Lines: Impact for Human Disease Modeling.

    Science.gov (United States)

    Schuster, Jens; Halvardson, Jonatan; Pilar Lorenzo, Laureanne; Ameur, Adam; Sobol, Maria; Raykova, Doroteya; Annerén, Göran; Feuk, Lars; Dahl, Niklas

    2015-10-01

    Induced pluripotent stem cell (iPSC) technology has become an important tool for disease modeling. Insufficient data on the variability among iPSC lines derived from a single somatic parental cell line have in practice led to generation and analysis of several, usually three, iPSC sister lines from each parental cell line. We established iPSC lines from a human fibroblast line (HDF-K1) and used transcriptome sequencing to investigate the variation among three sister lines (iPSC-K1A, B, and C). For comparison, we analyzed the transcriptome of an iPSC line (iPSC-K5B) derived from a different fibroblast line (HDF-K5), a human embryonic stem cell (ESC) line (ESC-HS181), as well as the two parental fibroblast lines. All iPSC lines fulfilled stringent criteria for pluripotency. In an unbiased cluster analysis, all stem cell lines (four iPSCs and one ESC) clustered together as opposed to the parental fibroblasts. The transcriptome profiles of the three iPSC sister lines were indistinguishable from each other, and functional pathway analysis did not reveal any significant hits. In contrast, the expression profiles of the ESC line and the iPSC-K5B line were distinct from that of the sister lines iPSC-K1A, B, and C. Differentiation to embryoid bodies and subsequent analysis of germ layer markers in the five stem cell clones confirmed that the distribution of their expression profiles was retained. Taken together, our observations stress the importance of using iPSCs of different parental origin rather than several sister iPSC lines to distinguish disease-associated mechanisms from genetic background effects in disease modeling.

  7. Diagnostic Power of Broad Emission Line Profiles in Searches for Binary Supermassive Black Holes: Comparison of Models with Observations

    Science.gov (United States)

    Nguyen, Khai; Bogdanovic, Tamara; Eracleous, Michael; Runnoe, Jessie C.; Sigurdsson, Steinn

    2017-01-01

    Motivated by observational searches for sub-parsec supermassive black hole binaries (SBHBs) we develop a semi-analytic model to describe the spectral emission line signatures of these systems. We are particularly interested in modeling the profiles of the broad emission lines, which have been used as a tool to search for SBHBs. The goal of this work is to test one of the leading models of binary accretion flows in the literature: SBHB in a circumbinary disk. In this context, we model SBHB accretion flows as a set of three accretion disks: two mini-disks that are gravitationally bound to the individual black holes and a circumbinary disk that forms a common envelope about a gravitationally bound binary. Our first generation model shows that emission line profiles tend to have different statistical properties depending on the semi-major axis, mass ratio, eccentricity of the binary, and the alignment of the triple-disk system, and can in principle be used to constrain the statistical distribution of these parameters. We present the results of a second generation model, which improves upon the treatment of radiative transfer by taking into account the effect of line-driven winds on the properties of the model emission line profiles. This improvement allows a preliminary comparison of the model profiles with the observed SBHB candidates and AGN population in general.

  8. Molecular profiling of breast cancer cell lines defines relevant tumor models and provides a resource for cancer gene discovery.

    Directory of Open Access Journals (Sweden)

    Jessica Kao

    Full Text Available BACKGROUND: Breast cancer cell lines have been used widely to investigate breast cancer pathobiology and new therapies. Breast cancer is a molecularly heterogeneous disease, and it is important to understand how well and which cell lines best model that diversity. In particular, microarray studies have identified molecular subtypes-luminal A, luminal B, ERBB2-associated, basal-like and normal-like-with characteristic gene-expression patterns and underlying DNA copy number alterations (CNAs. Here, we studied a collection of breast cancer cell lines to catalog molecular profiles and to assess their relation to breast cancer subtypes. METHODS: Whole-genome DNA microarrays were used to profile gene expression and CNAs in a collection of 52 widely-used breast cancer cell lines, and comparisons were made to existing profiles of primary breast tumors. Hierarchical clustering was used to identify gene-expression subtypes, and Gene Set Enrichment Analysis (GSEA to discover biological features of those subtypes. Genomic and transcriptional profiles were integrated to discover within high-amplitude CNAs candidate cancer genes with coordinately altered gene copy number and expression. FINDINGS: Transcriptional profiling of breast cancer cell lines identified one luminal and two basal-like (A and B subtypes. Luminal lines displayed an estrogen receptor (ER signature and resembled luminal-A/B tumors, basal-A lines were associated with ETS-pathway and BRCA1 signatures and resembled basal-like tumors, and basal-B lines displayed mesenchymal and stem/progenitor-cell characteristics. Compared to tumors, cell lines exhibited similar patterns of CNA, but an overall higher complexity of CNA (genetically simple luminal-A tumors were not represented, and only partial conservation of subtype-specific CNAs. We identified 80 high-level DNA amplifications and 13 multi-copy deletions, and the resident genes with concomitantly altered gene-expression, highlighting known and

  9. Hepatic drug metabolizing profile of Flinders Sensitive Line rat model of depression.

    Science.gov (United States)

    Kotsovolou, Olga; Ingelman-Sundberg, Magnus; Lang, Matti A; Marselos, Marios; Overstreet, David H; Papadopoulou-Daifoti, Zoi; Johanson, Inger; Fotopoulos, Andrew; Konstandi, Maria

    2010-08-16

    The Flinders Sensitive Line (FSL) rat model of depression exhibits some behavioral, neurochemical, and pharmacological features that have been reported in depressed patients and has been very effective in screening antidepressants. Major factor that determines the effectiveness and toxicity of a drug is the drug metabolizing capacity of the liver. Therefore, in order to discriminate possible differentiation in the hepatic drug metabolism between FSL rats and Sprague-Dawley (SD) controls, their hepatic metabolic profile was investigated in this study. The data showed decreased glutathione (GSH) content and glutathione S-transferase (GST) activity and lower expression of certain major CYP enzymes, including the CYP2B1, CYP2C11 and CYP2D1 in FSL rats compared to SD controls. In contrast, p-nitrophenol hydroxylase (PNP), 7-ethoxyresorufin-O-dealkylase (EROD) and 16alpha-testosterone hydroxylase activities were higher in FSL rats. Interestingly, the wide spread environmental pollutant benzo(alpha)pyrene (B(alpha)P) induced CYP1A1, CYP1A2, CYP2B1/2 and ALDH3c at a lesser extend in FSL than in SD rats, whereas the antidepressant mirtazapine (MIRT) up-regulated CYP1A1/2, CYP2C11, CYP2D1, CYP2E1 and CYP3A1/2, mainly, in FSL rats. The drug also further increased ALDH3c whereas suppressed GSH content in B(alpha)P-exposed FSL rats. In conclusion, several key enzymes of the hepatic biotransformation machinery are differentially expressed in FSL than in SD rats, a condition that may influence the outcome of drug therapy. The MIRT-induced up-regulation of several drug-metabolizing enzymes indicates the critical role of antidepressant treatment that should be always taken into account in the designing of treatment and interpretation of insufficient pharmacotherapy or drug toxicity.

  10. BEYOND THE STANDARD MODEL OF THE DISC–LINE SPECTRAL PROFILES FROM BLACK HOLE ACCRETION DISCS

    Directory of Open Access Journals (Sweden)

    Vjaceslav Sochora

    2014-08-01

    Full Text Available The strong gravitational field of a black hole has distinct effects on the observed profile of a spectral line from an accretion disc near a black hole. The observed profile of the spectral line is broadened and skewed by a fast orbital motion and redshifted by a gravitational field. These effects can help us to constrain the parameters of a system with a black hole, both in active galactic nuclei and in a stellar-mass black hole. Here we explore the fact that an accretion disc emission can be mathematically imagined as a superposition of radiating accretion rings that extend from the inner edge to the outer rim of the disc, with some radially varying emissivity. In our work, we show that a characteristic double-horn profile of several radially confined (relatively narrow accretion rings or belts could be recognized by the planned instruments onboard future satellites (such as the proposed ESA Large Observatory for X-ray Timing.

  11. Theoretical Emission-Line Profiles of Active Galactic Nuclei and the Unified Model. I. The Face-on Torus

    Science.gov (United States)

    Quintilio, R.; Viegas, S. M.

    1997-01-01

    Theoretical emission-line profiles are obtained for active galactic nuclei (AGNs) taking into account the presence of an obscuring torus around the central energy source. For the sake of simplicity, the torus is represented by a cylindrical shell characterized by the inner and outer radius and the opening angle. In this paper we discuss the results with angle of sight equal to 0, i.e., for a face-on torus. Different line profiles are obtained following the torus parameters. The line profiles may show more than one peak and bumps, depending on the torus dimensions. The main parameter determining the number of peaks or bumps is the opening angle. Thus, the observed line shape may be a good indicator of the torus characteristics. As an example, the fit to the observed [O III] λ5007 emission line of NGC 4151 is presented. The model reproduces the FWHM and the asymmetrical bumps observed. Partially supported by the Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP) under Grant 92/4335-9.

  12. Comparison of Return Stroke Current Profiles for Transmission-Line-Type and Traveling-Current-Source-Type Models

    Directory of Open Access Journals (Sweden)

    J.O. Adepitan

    2012-05-01

    Full Text Available The study is aimed at determining the dependence of the current along a channel on the model used, assuming the same base current. We compared three transmission-line-type models, namely: Transmission Line (TL, Modified Transmission Line with Linear decay, Modified Transmission Line with Exponential decay and two traveling-current-source-type models: Bruce-Golde (BG and Traveling Current Source (TCS models. The current profiles along the channel at different heights predicted by these models are presented and discussed. Comparison is based on the assumption that all the models have the same base current. It was found that at low heights and within a time window frame of 15 :s, the currents of the transmission-line-type models predict a zero value at one time or the other with a maximum turning point following some 1:s after. A linear relationship is predicted between the current peak and the channel height. A discontinuity of current peak was observed at high heights. No zero value of current was recorded in case of TCS both at low and high channel heights.

  13. Modeling the Zeeman effect in high altitude SSMIS channels for numerical weather prediction profiles: comparing a fast model and a line-by-line model

    Directory of Open Access Journals (Sweden)

    R. Larsson

    2015-10-01

    Full Text Available We present a comparison of a reference and a fast radiative transfer model using numerical weather prediction profiles for the Zeeman-affected high altitude Special Sensor Microwave Imager/Sounder channels 19–22. We find that the models agree well for channels 21 and 22 compared to the channels' system noise temperatures (1.9 and 1.3 K, respectively and the expected profile errors at the affected altitudes (estimated to be around 5 K. For channel 22 there is a 0.5 K average difference between the models, with a standard deviation of 0.24 K for the full set of atmospheric profiles. Same channel, there is 1.2 K in average between the fast model and the sensor measurement, with 1.4 K standard deviation. For channel 21 there is a 0.9 K average difference between the models, with a standard deviation of 0.56 K. Same channel, there is 1.3 K in average between the fast model and the sensor measurement, with 2.4 K standard deviation. We consider the relatively small model differences as a validation of the fast Zeeman effect scheme for these channels. Both channels 19 and 20 have smaller average differences between the models (at below 0.2 K and smaller standard deviations (at below 0.4 K when both models use a two-dimensional magnetic field profile. However, when the reference model is switched to using a full three-dimensional magnetic field profile, the standard deviation to the fast model is increased to almost 2 K due to viewing geometry dependencies causing up to ± 7 K differences near the equator. The average differences between the two models remain small despite changing magnetic field configurations. We are unable to compare channels 19 and 20 to sensor measurements due to limited altitude range of the numerical weather prediction profiles. We recommended that numerical weather prediction software using the fast model takes the available fast Zeeman scheme into account for data assimilation of the affected sensor channels to better

  14. An FE Based On-line Model for the Prediction of Work Roll Thermal Profile in Hot Strip Rolling

    Science.gov (United States)

    Choi, Ji Won; Lee, Jung Hyeung; Sun, Cheng Gang; Hwang, Sang Moo

    2010-06-01

    Prediction and control of the thermal deformation of the work roll is vital for enhancing product quality in hot strip and plate rolling. In this paper, we present an on-line model for the prediction of the work roll thermal profile. The model is developed on the basis of an integrated finite element model for the coupled analysis of heat transfer and deformation occurring at the bite zone, to rigorously take into account the effect of various rolling parameters on the thermal behavior of the work roll. The validity of the model is demonstrated through comparison with measurements made in an industrial hot strip mill. Also, an emphasis is given to the examination the effect of some selected rolling parameters in an actual production environment.

  15. CONTINUUM INTENSITY AND [O i] SPECTRAL LINE PROFILES IN SOLAR 3D PHOTOSPHERIC MODELS: THE EFFECT OF MAGNETIC FIELDS

    Energy Technology Data Exchange (ETDEWEB)

    Fabbian, D.; Moreno-Insertis, F., E-mail: damian@iac.es, E-mail: fmi@iac.es [Instituto de Astrofísica de Canarias (IAC), E-38205 La Laguna, Tenerife (Spain)

    2015-04-01

    The importance of magnetic fields in three-dimensional (3D) magnetoconvection models of the Sun’s photosphere is investigated in terms of their influence on the continuum intensity at different viewing inclination angles and on the intensity profile of two [O i] spectral lines. We use the RH numerical radiative transfer code to perform a posteriori spectral synthesis on the same time series of magnetoconvection models used in our publications on the effect of magnetic fields on abundance determination. We obtain a good match of the synthetic disk-center continuum intensity to the absolute continuum values from the Fourier Transform Spectrometer (FTS) observational spectrum; the match of the center-to-limb variation synthetic data to observations is also good, thanks, in part, to the 3D radiation transfer capabilities of the RH code. The different levels of magnetic flux in the numerical time series do not modify the quality of the match. Concerning the targeted [O i] spectral lines, we find, instead, that magnetic fields lead to nonnegligible changes in the synthetic spectrum, with larger average magnetic flux causing both of the lines to become noticeably weaker. The photospheric oxygen abundance that one would derive if instead using nonmagnetic numerical models would thus be lower by a few to several centidex. The inclusion of magnetic fields is confirmed to be important for improving the current modeling of the Sun, here in particular in terms of spectral line formation and of deriving consistent chemical abundances. These results may shed further light on the still controversial issue regarding the precise value of the solar oxygen abundance.

  16. Predicted profiles of ultraviolet interstellar absorption lines

    Energy Technology Data Exchange (ETDEWEB)

    Welty, D.E.; Hobbs, L.M.; York, D.G. (Chicago, University, IL (USA))

    1991-02-01

    In this paper, values of the column density, line width parameter, and velocity are determined for as many components derived from optical interstellar absorption-line profiles of Na I and K I as needed to reproduce the observed high-resolution optical profiles of the D lines of Na I toward eight lightly reddened stars and of the 7698 A line of K I toward six moderately reddened stars. The derived component structures are then used to predict UV absorption-line profiles due to C I, Mg I, S I, Si I, and Fe I along the same lines of sight. Comparison of the predicted profiles with existing lower resolution line profiles and equivalent width data suggests that this simple scaling procedure can in many cases fairly reliably predict the UV profiles from the observed optical ones. 64 refs.

  17. MODELING THE Fe K LINE PROFILES IN TYPE I ACTIVE GALACTIC NUCLEI WITH A COMPTON-THICK DISK WIND

    Energy Technology Data Exchange (ETDEWEB)

    Tatum, M. M.; Turner, T. J. [Department of Physics, University of Maryland, Baltimore County, Baltimore, MD 21250 (United States); Sim, S. A. [Research School of Astronomy and Astrophysics, Mount Stromlo Observatory, Cotter Road, Weston Creek, ACT 2611 (Australia); Miller, L. [Department of Physics, University of Oxford, Denys Wilkinson Building, Keble Road, Oxford OX1 3RH (United Kingdom); Reeves, J. N.; Patrick, A. R. [Astrophysics Group, School of Physical and Geographical Sciences, Keele University, Keele, Staffordshire ST5 5BG (United Kingdom); Long, K. S. [Space Telescope Science Institute, 3700 San Martin Drive, Baltimore, MD 21218 (United States)

    2012-06-20

    We have modeled a small sample of Seyfert galaxies that were previously identified as having simple X-ray spectra with little intrinsic absorption. The sources in this sample all contain moderately broad components of Fe K-shell emission and are ideal candidates for testing the applicability of a Compton-thick accretion disk wind model to active galactic nucleus (AGN) emission components. Viewing angles through the wind allow the observer to see the absorption signature of the gas, whereas face-on viewing angles allow the observer to see the scattered light from the wind. We find that the Fe K emission line profiles are well described with a model of a Compton-thick accretion disk wind of solar abundances, arising tens to hundreds of gravitational radii from the central black hole. Further, the fits require a neutral component of Fe K{alpha} emission that is too narrow to arise from the inner part of the wind, and likely comes from a more distant reprocessing region. Our study demonstrates that a Compton-thick wind can have a profound effect on the observed X-ray spectrum of an AGN, even when the system is not viewed through the flow.

  18. Speed-dependent spectral line profile including line narrowing and mixing

    Science.gov (United States)

    Kochanov, Victor P.

    2016-07-01

    A line profile model was developed that accounts for all essential underlying physical mechanisms. The model is based on the quantum-mechanical collision integral kernel calculated for intermolecular interaction potentials ∝r-n with n=3…6 where r is the distance between colliding molecules. It was shown that collisions of molecules with scattering on classical small angles flatten the line profile. The relative flattening reaches 10% for n=3 and has a smaller value, ~2%, for n=6 in conditions of inhomogeneous line broadening. An algebraic expression for the line profile was obtained, which allows processing recorded spectra with preliminary estimation and constraint of some of the profile's parameters.

  19. Explaining the unusual line profiles of SN 2006gy

    Science.gov (United States)

    Chugai, Nikolai N.

    2017-02-01

    This paper explores the origin of the enigmatic line profiles of the extremely luminous Type IIn supernova, SN 2006gy, on day 96. Among the conceivable possibilities, the most preferred is the model that suggests there are holes in the optically thick cool dense shell (CDS). The line radiation emitted at the inner side of the opaque CDS escapes through the holes, thus producing an unusual line profile with the emission shifted redward. The holes could emerge as a result of the vigorous Rayleigh-Taylor instability, leading to the CDS fragmentation. The model light curve with the CDS fragmentation is shown to be consistent with the SN 2006gy bolometric light curve.

  20. Explaining unusual line profiles of SN 2006gy

    CERN Document Server

    Chugai, Nikolai

    2016-01-01

    Origin of enigmatic line profiles of extremely luminous type IIn supernova SN~2006gy on day 96 is explored. Among conceivable possibilities the most preferred is the model that suggests holes in the optically thick cool dense shell (CDS). The line radiation emitted at the inner side of the opaque CDS escapes through the holes thus producing unusual line profile with the emission shifted redward. The holes could emerge as a result of a vigorous Rayleigh-Taylor instability leading to the CDS fragmentation. The model light curve with the CDS fragmentation is shown to be consistent with the SN~2006gy bolometric light curve.

  1. Dislocation Effects on the Diffraction Line Profiles from Nanocrystalline Domains

    Science.gov (United States)

    Leonardi, Alberto; Scardi, Paolo

    2016-12-01

    A Pd nano-polycrystalline microstructure was simulated by molecular dynamics, including edge or screw dislocations in one of the 50 grains, so as to produce a realistic model of nanocrystalline domain with line defect. The same crystalline domain was also studied, with or without line defects, as a free-standing, isolated nanocrystal. Atomic coordinates of the selected domain were used to generate powder patterns by means of the Debye scattering equation, and these patterns were used as "experimental" data to test existing methods of line profile analysis in controlled condition, i.e., with known type and density of defects. Results show that the Krivolgaz-Wilkens theory of dislocation line broadening qualitatively agrees with the MD model, but errors can be larger than 50 pct. A critical issue arises from the instability of the Krivolgaz-Wilkens model when all line profile parameters are simultaneously refined: reasonable results can be obtained by fixing or restricting some parameters.

  2. Interplanetary Lyman $\\alpha$ line profiles: variations with solar activity cycle

    CERN Document Server

    Quemerais, E; Bertaux, J L; Koutroumpa, D; Clarke, J; Kyrola, E; Schmidt, W; Qu\\'emerais, Eric; Lallement, Rosine; Bertaux, Jean-Loup; Koutroumpa, Dimitra; Clarke, John; Kyrola, Erkki; Schmidt, Walter

    2006-01-01

    Interplanetary Lyman alpha line profiles are derived from the SWAN H cell data measurements. The measurements cover a 6-year period from solar minimum (1996) to after the solar maximum of 2001. This allows us to study the variations of the line profiles with solar activity. These line profiles were used to derive line shifts and line widths in the interplanetary medium for various angles of the LOS with the interstellar flow direction. The SWAN data results were then compared to an interplanetary background upwind spectrum obtained by STIS/HST in March 2001. We find that the LOS upwind velocity associated with the mean line shift of the IP \\lya line varies from 25.7 km/s to 21.4 km/s from solar minimum to solar maximum. Most of this change is linked with variations in the radiation pressure. LOS kinetic temperatures derived from IP line widths do not vary monotonically with the upwind angle of the LOS. This is not compatible with calculations of IP line profiles based on hot model distributions of interplanet...

  3. A catalogue of Paschen-line profiles in standard stars

    CERN Document Server

    Huang, Wenjin; Stone, Myra; 10.1051/0004-6361/201219804

    2012-01-01

    We have assembled an atlas of line profiles of the Paschen Delta line at 10,049 angstroms for the use of stellar modelling. For a few stars we have substituted the Paschen Gamma line at 10,938 angstroms because the Paschen Delta line blends with other features. Most of the targets are standard stars of spectral types from B to M. A few metal-poor stars have been included. For many of the stars we have also observed the Hydrogen Alpha line so as to compare the profiles of lines originating from the meta-stable n=2 level with lines originating from the n=3 level. The greatest difference in line profile is found for high luminosity and cool stars where the departures from LTE in the population of the n=2 level is expected to be the greatest. For a few stars, sample line profiles have been calculated in the LTE approximation to demonstrate the usefulness of the tabulated and displayed catalogue.

  4. Iron Line Profiles in Strong Gravity

    CERN Document Server

    Beckwith, K; Beckwith, Kris; Done, Chris

    2004-01-01

    We describe a new code which can accurately calculate the relativistic effects which distort the emission from an accretion disc around a black hole. We compare our results for a disk from 6-20r_g in both Schwarzchild and extreme Kerr spacetimes with the two line profile codes which are on general release in the XSPEC spectral fitting package. These are generally accurate at the 10-20% level for this range of radii, but have some drawbacks in terms of assumptions and/or resolution. In particular we show that the assumed form of the angular emissivity law (limb darkening or brightening) can make significant changes to the derived line profile. Lightbending effects are never negligible at these radii, so the observed line is produced from a range of different emitted angles, and this can affect the derived radial emissivity law. The line profile is not simply determined by the well defined (but numerically difficult) physical effects of strong gravity, but is also dependent on the poorly known astrophysics of t...

  5. Determination of the Whiteside line on femur surface models by fitting high-order polynomial functions to cross-section profiles of the intercondylar fossa.

    Science.gov (United States)

    Cerveri, Pietro; Marchente, Mario; Manzotti, Alfonso; Confalonieri, Norberto

    2011-01-01

    Innovative methods for morphological and functional analysis of bones have become a primary objective in the development of planning systems for total knee replacement (TKR). These methods involve the interactive identification of clinical landmarks (reference points, distances, angles, and functional axes of movement) and the determination of the optimal implant size and positioning. Among the functional axes used to estimate the correct alignment of the femoral component, the Whiteside line, namely, the anterior-posterior (AP) direction, is one of the most common. In this paper, we present a computational framework that allows automatic identification of the Whiteside line. The approach is based on geometric analysis of the saddle shape of the intercondylar fossa to extract the principal line in the AP direction. A plane parallel to the frontal plane is moved in the AP direction to obtain the 2D profiles of the intercondylar fossa. Each profile is fitted to a fifth-order polynomial curve and its maximum curvature point computed. The point set collected across all the profiles is then processed to compute the principal direction. The 2D profile-fitting and 3D line-fitting residual errors were analyzed to study the relationship between the intercondylar fossa aspect and the nominal saddle surface. The method was validated using femur specimens from elderly subjects reconstructed from CT scans. The repeatability of the method was evaluated across five different femur surface resolutions. For comparison, three expert orthopaedic surgeons identified, by virtual palpation, the Whiteside line on the same 3D femur models. The repeatability (median angular error) of the Whiteside lines computed by the automated method and by manual virtual palpation, was approximately 1.0° and 3.5°, respectively. The angular skew error between the two axes, measured on the axial plane, averaged approximately 4.00° (SD: 2.64°) with no statistical difference. The automated method

  6. Theory of satellite structures on spectral-line profiles.

    Science.gov (United States)

    Atakan, A. K.; Jacobson, H. C.

    1973-01-01

    A systematic comparison with experiment of various explanations for the problem of satellite-band formation on spectral-line profiles was initiated. The experiments were performed under a variety of conditions in an effort to construct a consistent model of entire line shapes. A composite theory is detailed which is the result of the insights of many individuals. The calculations indicate that the main features of the problem, the line, the high-intensity red satellites, and the blue satellite can be described simultaneously. The results also indicate that widely different potentials can lead to very similar line profiles. Ancillary conclusions are presented concerning the role of Lennard-Jones potentials in line-shape calculations.

  7. An atlas of synthetic line profiles of planetary nebulae

    CERN Document Server

    Morisset, C

    2008-01-01

    We have constructed a grid of photoionization models of spherical, elliptical and bipolar planetary nebulae. Assuming different velocity fields, we have computed line profiles corresponding to different orientations, slit sizes and positions. The atlas is meant both for didactic purposes and for the interpretation of data on real nebulae. As an application, we have shown that line profiles are often degenerate, and that recovering the geometry and velocity field from observations requires lines from ions with different masses and different ionization potentials. We have also shown that the empirical way to measure mass-weighted expansion velocities from observed line widths is reasonably accurate if considering the HWHM. For distant nebulae, entirely covered by the slit, the unknown geometry and orientation do not alter the measured velocities statistically. The atlas is freely accessible from internet. The Cloudy_3D suite and the associated VISNEB tool are available on request.

  8. Probing the mass-loss history of AGB and red supergiant stars from CO rotational line profiles I. Theoretical model -- Mass-loss history unravelled in VY CMa

    CERN Document Server

    Decin, L; De Koter, A; Justtanont, K; Tielens, A G G M; Waters, L B F M

    2006-01-01

    Context: Mass loss plays a dominant role in the evolution of low mass stars while they are on the Asymptotic Giant Branch (AGB). The gas and dust ejected during this phase are a major source in the mass budget of the interstellar medium. Recent studies have pointed towards the importance of variations in the mass-loss history of such objects. Aims: By modelling the full line profile of low excitation CO lines emitted in the circumstellar envelope, we can study the mass-loss history of AGB stars. Methods: We have developed a non-LTE radiative transfer code, which calculates the velocity structure and gas kinetic temperature of the envelope in a self-consistent way. The resulting structure of the envelope provides the input for the molecular line radiative calculations which are evaluated in the comoving frame. The code allows for the implementation of modulations in the mass-loss rate. This code has been benchmarked against other radiative transfer codes and is shown to perform well and efficiently. Results: W...

  9. Line profiles of the two-phase medium broad-line region in active galactic nuclei

    Institute of Scientific and Technical Information of China (English)

    薛随建; 林宣滨; 程福臻; John Kwan

    1996-01-01

    In the framework of BLR in AGNs, i.e. large number of small, cold and dense emission-line clouds immerging in an intercloud hot medium, a delicate radiation model for a typical emission cloud is established, in which the backside photoionization of the cloud against the central continuum source by the scattered diffuse continuum in the hot medium is considered. Under the assumption of the radial kinematics of the BLR clouds, the line profiles for the two important UV emission-lines, Lya and CIV/11549 are computed; and based on these calculations, various physical factors that affect the properties of the emission-line profiles are discussed. It is concluded that: (i) when the BLR clouds is inflow, there exists a confining hot medium with density around 2 x 105 cm-3. In this case, theoretical line profiles agree well with the observational; (ii) both symmetric Lya and nearly symmetric CIV line profiles show blue velocity shifts, the quantities of which are sensitive to the cutoff of the outer radius of t

  10. Interpreting the Mg IIh andk Line Profiles of Mira Variables

    Science.gov (United States)

    Wood, B. E.; Karovska, M.

    2000-11-01

    We use radiative transfer calculations to reproduce the basic appearance of Mg II lines observed from Mira variables. These lines have centroids that are blueshifted by at least 30 km s-1 from the stellar rest frame. It is unlikely that flow velocities in the stellar atmospheres are this fast, so radiative transfer effects must be responsible for this behavior. Published hydrodynamic models predict the existence of cool, downflowing material above the shocked material responsible for the Mg II emission, and we demonstrate that scattering in this layer can result in Mg II profiles as highly blueshifted as those that are observed. However, our models also show that scattering within the shock plays an equally strong role in shaping the Mg II profiles, and our calculations illustrate the importance of partial redistribution and the effects of being out of ionization equilibrium.

  11. Alpha Virginis: line-profile variations and orbital elements

    CERN Document Server

    Harrington, David; Olguín, Enrique; Ilyin, Ilya; Berdyugina, Svetlana V; Lara, Bruno; Moreno, Edmundo

    2016-01-01

    Abridged: Alpha Virginis is a binary system whose proximity and brightness allow detailed investigations of the internal structure and evolution of stars undergoing time-variable tidal interactions. Previous studies have led to the conclusion that the internal structure of Spica's primary star may be more centrally condensed than predicted by theoretical models of single stars, raising the possibility that the interactions could lead to effects that are currently neglected in structure and evolution calculations. The key parameters in confirming this result are the values of the orbital eccentricity $e$, the apsidal period $U$, and the primary star's radius, R_1. We analyze the impact that line profile variability has on the derivation of its orbital elements and R_1. We use high SNR observations obtained in 2000, 2008, and 2013 to derive the orbital elements from fits to the radial velocity curves. We produce synthetic line profiles using an ab initio tidal interaction model. Results: The variations in the l...

  12. Relativistic emission lines from accreting black holes - The effect of disk truncation on line profiles

    CERN Document Server

    Müller, A; Mueller, Andreas; Camenzind, Max

    2004-01-01

    Relativistic emission lines generated by thin accretion disks around rotating black holes are an important diagnostic tool for testing gravity near the horizon. The iron K-line is of special importance for the interpretation of the X-ray emission of Seyfert galaxies, quasars and galactic X-ray binary systems. A generalized kinematic model is presented which includes radial drifts and non-Keplerian rotations for the line emitters. The resulting line profiles are obtained with an object-oriented ray tracer operating in the curved Kerr background metric. The general form of the Doppler factor is presented which includes all kinds of poloidal and toroidal motions near the horizon. The parameters of the model include the spin parameter, the inclination, the truncation and outer radius of the disk, velocity profiles for rotation and radial drift, the emissivity profile and a multi-species line-system. The red wing flux is generally reduced when radial drift is included as compared to the pure Keplerian velocity fie...

  13. Profiles of Strong Permitted Lines in Classical T Tauri Stars

    CERN Document Server

    Alencar, S; Alencar, Silvia; Basri, Gibor

    2000-01-01

    We present a spectral analysis of 30 T Tauri stars observed with the Hamilton echelle spectrograph over more than a decade. One goal is to test magnetospheric accretion model predictions. Observational evidence previously published supporting the model, such as emission line asymmetry and a high frequency of redshifted absorption components, are considered. We also discuss the relation between different line forming regions and search for good accretion rate indicators. In this work we confirm several important points of the models, such as the correlation between accretion and outflow, broad emission components that are mostly central or slightly blueshifted and only the occasional presence of redshifted absorption. We also show, however, that the broad emission components supposedly formed in the magnetospheric accretion flow only partially support the models. Unlike the predictions, they are sometimes redshifted, and are mostly found to be symmetric. The published theoretical profiles do not have a strong ...

  14. Alpha Virginis: line-profile variations and orbital elements

    Science.gov (United States)

    Harrington, David; Koenigsberger, Gloria; Olguín, Enrique; Ilyin, Ilya; Berdyugina, Svetlana V.; Lara, Bruno; Moreno, Edmundo

    2016-05-01

    Context. Alpha Virginis (Spica) is a B-type binary system whose proximity and brightness allow detailed investigations of the internal structure and evolution of stars undergoing time-variable tidal interactions. Previous studies have led to the conclusion that the internal structure of Spica's primary star may be more centrally condensed than predicted by theoretical models of single stars, raising the possibility that the interactions could lead to effects that are currently neglected in structure and evolution calculations. The key parameters in confirming this result are the values of the orbital eccentricity e, the apsidal period U, and the primary star's radius, R1. Aims: The aim of this paper is to analyze the impact that Spica's line profile variability has on the derivation of its orbital elements and to explore the use of the variability for constraining R1. Methods: We use high signal-to-noise and high spectral resolution observations obtained in 2000, 2008, and 2013 to derive the orbital elements from fits to the radial velocity curves. We produce synthetic line profiles using an ab initio tidal interaction model. Results: The general variations in the line profiles can be understood in terms of the tidal flows, whose large-scale structure is relatively fixed in the rotating binary system reference frame. Fits to the radial velocity curves yield e = 0.108 ± 0.014. However, the analogous RV curves from theoretical line profiles indicate that the distortion in the lines causes the fitted value of e to depend on the argument of periastron; i.e., on the epoch of observation. As a result, the actual value of e may be as high as 0.125. We find that U = 117.9 ± 1.8, which is in agreement with previous determinations. Using the value R1 = 6.8 R⊙ derived by Palate et al. (2013) the value of the observational internal structure constant k2,obs is consistent with theory. We confirm the presence of variability in the line profiles of the secondary star. RV

  15. Stellar model atmospheres with magnetic line blanketing

    CERN Document Server

    Kochukhov, O; Shulyak, D

    2004-01-01

    Model atmospheres of A and B stars are computed taking into account magnetic line blanketing. These calculations are based on the new stellar model atmosphere code LLModels which implements direct treatment of the opacities due to the bound-bound transitions and ensures an accurate and detailed description of the line absorption. The anomalous Zeeman effect was calculated for the field strengths between 1 and 40 kG and a field vector perpendicular to the line of sight. The model structure, high-resolution energy distribution, photometric colors, metallic line spectra and the hydrogen Balmer line profiles are computed for magnetic stars with different metallicities and are discussed with respect to those of non-magnetic reference models. The magnetically enhanced line blanketing changes the atmospheric structure and leads to a redistribution of energy in the stellar spectrum. The most noticeable feature in the optical region is the appearance of the 5200 A depression. However, this effect is prominent only in ...

  16. On Spectral Line Profiles in Type Ia Supernova Spectra

    CERN Document Server

    Foley, Ryan J

    2013-01-01

    We present a detailed analysis of spectral line profiles in Type Ia supernova (SN Ia) spectra. We focus on the feature at ~3500 - 4000 A, which is commonly thought to be caused by blueshifted absorption of Ca H&K. Unlike some other spectral features in SN Ia spectra, this feature often has two overlapping (blue and red) components. It is accepted that the red component comes from photospheric calcium. However, it has been proposed that the blue component is caused by either high-velocity calcium (from either abundance or density enhancements above the photosphere of the SN) or Si II 3858. By looking at multiple data sets and model spectra, we conclude that the blue component of the Ca H&K feature is caused by Si II 3858 for most SNe Ia. The strength of the Si II 3858 feature varies strongly with the light-curve shape of a SN. As a result, the velocity measured from a single-Gaussian fit to the full line profile correlates with light-curve shape. The velocity of the Ca H&K component of the profile ...

  17. Reaching Higher Densities for Laboratory White Dwarf Photospheres to Measure Spectroscopic Line Profiles

    CERN Document Server

    Falcon, Ross E; Gomez, T A; Schaeuble, M; Nagayama, T; Montgomery, M H; Winget, D E; Rochau, G A

    2016-01-01

    As part of our laboratory investigation of the theoretical line profiles used in white dwarf atmosphere models, we extend the electron-density ($n_{\\rm e}$) range measured by our experiments to higher densities (up to $n_{e}\\sim80\\times10^{16}$ cm$^{-3}$). Whereas inferred parameters using the hydrogen-$\\beta$ spectral line agree among different line-shape models for $n_{\\rm e}\\lesssim30\\times10^{16}$ cm$^{-3}$, we now see divergence between models. These are densities beyond the range previously benchmarked in the laboratory, meaning theoretical profiles in this regime have not been fully validated. Experimentally exploring these higher densities enables us to test and constrain different line-profile models, as the differences in their relative H-Balmer line shapes are more pronounced at such conditions. These experiments also aid in our study of occupation probabilities because we can measure these from relative line strengths.

  18. Interface Profiles near Three-Phase Contact Lines in Electric Fields

    OpenAIRE

    Buehrle, Juergen; Herminghaus, Stephan; Mugele, Frieder

    2003-01-01

    Long-range electrostatic fields deform the surface profile of a conductive liquid in the vicinity of the contact line. We have investigated the equilibrium profiles by balancing electrostatic and capillary forces locally at the liquid vapor interface. Numerical results show that the contact angle at the contact line approaches Young's angle. Simultaneously, the local curvature displays a weak algebraic divergence. Furthermore, we present an asymptotic analytical model, which confirms these re...

  19. Line Profile Asymmetries and the Chromospheric Flare Velocity Field

    Science.gov (United States)

    Kuridze, D.; Mathioudakis, M.; Simões, P. J. A.; Rouppe van der Voort, L.; Carlsson, M.; Jafarzadeh, S.; Allred, J. C.; Kowalski, A. F.; Kennedy, M.; Fletcher, L.; Graham, D.; Keenan, F. P.

    2015-11-01

    The asymmetries observed in the line profiles of solar flares can provide important diagnostics of the properties and dynamics of the flaring atmosphere. In this paper the evolution of the Hα and Ca ii λ8542 lines are studied using high spatial, temporal, and spectral resolution ground-based observations of an M1.1 flare obtained with the Swedish 1 m Solar Telescope. The temporal evolution of the Hα line profiles from the flare kernel shows excess emission in the red wing (red asymmetry) before flare maximum and excess in the blue wing (blue asymmetry) after maximum. However, the Ca ii λ8542 line does not follow the same pattern, showing only a weak red asymmetry during the flare. RADYN simulations are used to synthesize spectral line profiles for the flaring atmosphere, and good agreement is found with the observations. We show that the red asymmetry observed in Hα is not necessarily associated with plasma downflows, and the blue asymmetry may not be related to plasma upflows. Indeed, we conclude that the steep velocity gradients in the flaring chromosphere modify the wavelength of the central reversal in the Hα line profile. The shift in the wavelength of maximum opacity to shorter and longer wavelengths generates the red and blue asymmetries, respectively.

  20. Detection of Voigt Spectral Line Profiles of Hydrogen Radio Recombination Lines toward Sagittarius B2(N)

    CERN Document Server

    von Prochazka, Azrael A; Balser, Dana S; Ryans, Robert S I; Marshall, Adele H; Schwab, Fredric R; Hollis, Jan M; Jewell, Philip R; Lovas, Frank J

    2010-01-01

    We report the detection of Voigt spectral line profiles of radio recombination lines (RRLs) toward Sagittarius B2(N) with the 100-m Green Bank Telescope (GBT). At radio wavelengths, astronomical spectra are highly populated with RRLs, which serve as ideal probes of the physical conditions in molecular cloud complexes. An analysis of the Hn(alpha) lines presented herein shows that RRLs of higher principal quantum number (n>90) are generally divergent from their expected Gaussian profiles and, moreover, are well described by their respective Voigt profiles. This is in agreement with the theory that spectral lines experience pressure broadening as a result of electron collisions at lower radio frequencies. Given the inherent technical difficulties regarding the detection and profiling of true RRL wing spans and shapes, it is crucial that the observing instrumentation produce flat baselines as well as high sensitivity, high resolution data. The GBT has demonstrated its capabilities regarding all of these aspects,...

  1. Research Into a Neon Spectral Line Profile of Dusty Plasma

    CERN Document Server

    Pikalev, Aleksandr

    2014-01-01

    Ordered dusty structures influence plasma conditions. This influence can be revealed, when plasma spectral characteristics change, as dusty particles are injected. For example, a variation in the atomic temperature leads to a variation in the profiles of spectral lines. We studied the profile of a 585 nm neon spectral line in the dusty structures. The structures levitated in a positive column of a glow discharge at a pressure of 50-150 Pa and with a current of 1-9 mA. We scanned the profile with the use of a Fabry-Perot interferometer, by changing the air pressure between the interferometer mirrors. To process the data, a special algorithm was developed. The algorithm is resistant to a noise and a scanning speed instability. We have found an upper bound of the impact of dusty structures on the profile width. The appearance of macroparticles changes the atomic plasma temperature less than by 10 K.

  2. The Line-Profile Variations of Theta2 Tauri

    Science.gov (United States)

    Kennelly, E. J.; Walker, G. A. H.

    1996-04-01

    With a 5.4-hour time series of high-resolution CFHT spectra, the oscillations of the rapidly-rotating delta Scuti star Theta2 Tauri (A7 IV + A5 V) are investigated. Line-profile variations are discovered and identified with the spectrum of the primary star of this binary system. Radial velocity variations are derived from the data and analyzed to reveal an oscillation frequency near 13.7 cycles day^-1. Variations within the absorption profiles are analyzed with a Fourier-Doppler Imaging (FDI) technique to reveal that high-degree oscillations with a frequency of 16.1 cycles day ^-1 and an apparent degree of about l = 8 are also present in the star. Whereas the low-degree variations of Theta2 Tau have been shown to be consistent with p-modes of radial order n=2 or 3, the identification of the high-degree variations in terms of pressure modes requires confirmation with theoretical models. (SECTION: Stars)

  3. PROFIT: a new alternative for emission-line PROfile FITting

    CERN Document Server

    Riffel, Rogemar A

    2010-01-01

    I briefly describe a simple routine for emission-line profiles fitting by Gaussian curves or Gauss-Hermite series. The PROFIT (line-PROfile FITting) routine represent a new alternative for use in fits data cubes, as those from Integral Field Spectroscopy or Fabry-Perot Interferometry, and may be useful to better study the emission-line flux distributions and gas kinematics in distinct astrophysical objects, such as the central regions of galaxies and star forming regions. The PROFIT routine is written in IDL language and is available at http://www.ufsm.br/rogemar/software.html. The PROFIT routine was used to fit the [Fe II]1.257um emission-line profiles for about 1800 spectra of the inner 350 pc of the Seyfert galaxy Mrk1066 obtained with Gemini NIFS and shows that the line profiles are better reproduced by Gauss-Hermite series than by the commonly used Gaussian curves. The two-dimensional map of the h_3 Gauss-Hermite moment shows its highest absolute values in regions close to the edge of the radio structure...

  4. Transmission line model for nanoelectronics

    Directory of Open Access Journals (Sweden)

    Nelin E. A.

    2009-08-01

    Full Text Available Analytical expressions for resonant parametres and characteristics of typical barrier nanoelectronic structures have been received on the basis of the transmission line model. Characteristics illustrating the efficiency of such approach are presented in the article.

  5. Simulations of Line Profile Structure in Shell Galaxies

    CERN Document Server

    Jilkova, L; Krizek, M; Ebrova, I; Stoklasova, I; Bartakova, T; Bartoskova, K

    2009-01-01

    In the context of exploring mass distributions of dark matter haloes in giant ellipticals, we extend the analysis carried out Merrifield and Kuijken (1998) for stellar line profiles of shells created in nearly radial mergers of galaxies. We show that line-of-sight velocity distributions are more complex than previously predicted. We simulate shell formation and analyze the detectability of spectroscopic signatures of shells after convolution with spectral PSFs.

  6. The effects of black hole rotation on line profiles from accretion discs

    Energy Technology Data Exchange (ETDEWEB)

    Kojima, Yasufumi (Tokyo Metropolitan Univ. (Japan). Dept. of Physics)

    1991-06-01

    The fluorescent line emitted from an accretion disc around a rotating black hole is examined. The line profiles for various models with inclination angle, Kerr parameter and disc parameters are given. If the emitting region is highly localized to the inner part, r<20 GM/c{sup 2}, the difference due to the black hole rotation appears in the line profiles. Otherwise, the difference is hidden due to photons emitted from larger radii, where the propagation of the radiation and the disc structure are almost independent of the Kerr parameter. (author).

  7. Halpha line profile asymmetries and the chromospheric flare velocity field

    CERN Document Server

    Kuridze, D; Simões, P J A; van der Voort, L Rouppe; Carlsson, M; Jafarzadeh, S; Allred, J C; Kowalski, A F; Kennedy, M; Fletcher, L; Graham, D; Keenan, F P

    2015-01-01

    The asymmetries observed in the line profiles of solar flares can provide important diagnostics of the properties and dynamics of the flaring atmosphere. In this paper the evolution of the Halpha and Ca II 8542 {\\AA} lines are studied using high spatial, temporal and spectral resolution ground-based observations of an M1.1 flare obtained with the Swedish 1-m Solar Telescope. The temporal evolution of the Halpha line profiles from the flare kernel shows excess emission in the red wing (red asymmetry) before flare maximum, and excess in the blue wing (blue asymmetry) after maximum. However, the Ca II 8542 {\\AA} line does not follow the same pattern, showing only a weak red asymmetry during the flare. RADYN simulations are used to synthesise spectral line profiles for the flaring atmosphere, and good agreement is found with the observations. We show that the red asymmetry observed in Halpha is not necessarily associated with plasma downflows, and the blue asymmetry may not be related to plasma upflows. Indeed, w...

  8. Radial dependence of line profile variability in seven O9--B0.5 stars

    CERN Document Server

    Martins, F; Hillier, D J; Donati, J -F; Bouret, J -C

    2014-01-01

    Massive stars show a variety of spectral variability: presence of discrete absorption components in UV P-Cygni profiles, optical line profile variability, X-ray variability, radial velocity modulations. Our goal is to study the spectral variability of single OB stars to better understand the relation between photospheric and wind variability. For that, we rely on high spectral resolution, high signal-to-noise ratio optical spectra collected with the spectrograph NARVAL on the Telescope Bernard Lyot at Pic du Midi. We investigate the variability of twelve spectral lines by means of the Temporal Variance Spectrum (TVS). The selected lines probe the radial structure of the atmosphere, from the photosphere to the outer wind. We also perform a spectroscopic analysis with atmosphere models to derive the stellar and wind properties, and to constrain the formation region of the selected lines. We show that variability is observed in the wind lines of all bright giants and supergiants, on a daily timescale. Lines form...

  9. On-line diffusion profile of a lipophilic model dye in different depths of a hair follicle in human scalp skin.

    Science.gov (United States)

    Grams, Ylva Y; Whitehead, Lynne; Lamers, Gerda; Sturmann, Nico; Bouwstra, Joke A

    2005-10-01

    In skin and hair research, drug targeting to the hair follicle is of great interest in the treatment of skin diseases. The aim of this study is to visualize on-line the diffusion processes of a model fluorophore into the hair follicle at different depths using fresh human scalp skin and confocal laser scanning microscopy. Up to a depth of 500 microm in the skin, a fast increase of fluorescence is observed in the gap followed by accumulation of the dye in the hair cuticle. Penetration was also observed via the stratum corneum and the epidermis. Little label reached depths greater than 2000 microm. Fat cells accumulated the label fastest, followed by the cuticular area and the outer root sheath of the hair follicle. Sweat glands revealed very low staining, whereas the bulb at a depth of 4000 microm was visualized only by autofluorescence. From this study, we conclude that on-line visualization is a promising technique to access diffusion processes in deep skin layers even on a cellular level. Furthermore, we conclude that the gap and the cuticle play an important role in the initial diffusion period with the label in the cuticle originating from the gap.

  10. Consistency of spherical, gravity-dominated dynamics with quasar high-ionization emission-line profiles

    Science.gov (United States)

    Kallman, T. R.; Wilkes, B. J.; Krolik, J. H.; Green, Richard

    1993-01-01

    Line profile data are used to test a simple kinematic model - spherically symmetric gravitational free fall - in which the number of free parameters is limited by requiring physical self-consistency. The predictions of this model are fitted to high-resolution spectra of the stronger rest-frame UV emission lines in 12 quasars with z of about 2. It is found that if all the lines are radiated predominantly from the illuminated faces of the emission-line clouds, the profiles of Ly-alpha, N V 1240 A, and C IV 1549 A can be simultaneously well fitted with very similar parameters for all 12 quasars. It is concluded that spherically symmetric gravitational free fall does not correctly describe the dynamics of quasar broad emission-line regions.

  11. Abundance sensitive points of line profiles in the stellar spectra

    CERN Document Server

    Sheminova, V A

    2014-01-01

    Many abundance studies are based on spectrum synthesis and $\\chi$-squared differences between the synthesized and an observed spectrum. Much of the spectra so compared depend only weakly on the elemental abundances. Logarithmic plots of line depths rather than relative flux make this more apparent. We present simulations that illustrate a simple method for finding regions of the spectrum most sensitive to abundance, and also some caveats for using such information. As expected, we find that weak features are the most sensitive. Equivalent widths of weak lines are ideal features, because of their sensitivity to abundances, and insensitivity to factors that broaden the line profiles. The wings of strong lines can also be useful, but it is essential that the broadening mechanisms be accurately known. The very weakest features, though sensitive to abundance, should be avoided or used with great caution because of uncertainty of continuum placement as well as numerical uncertainties associated with the subtraction...

  12. FIR line profiles as probes of warm gas dynamics

    Science.gov (United States)

    Betz, A. L.; Boreiko, R. T.

    1995-01-01

    Measurements of the shapes, velocities, and intensities of FIR lines all help to probe the dynamics, physical associations, and excitation conditions of warm gas in molecular clouds. With this in mind, we have observed the J=9-8, 12-11,14-13, and 16-15 lines of (12)CO and the 158 micron line of C II in a number of positions in 4 selected clouds. The data were obtained with a laser heterodyne spectrometer aboard NASA's Kuiper Airborne Observatory. Line measurements at 0.6 km/s resolution allow us to resolve the profiles completely, and thereby to distinguish between UV-and shock-heating mechanisms for the high-excitation gas. For CO, the high-J linewidths lie in the range of 4-20 km/s (FWHM), similar to those observed for low-J (J less than 4) transitions in these sources. This correspondence suggests that the hotter gas (T = 200-600 K) is dynamically linked to the quiescent gas component, perhaps by association with the UV-heated peripheries of the numerous cloud clumps. Much of the C II emission is thought to emanate from these cloud peripheries, but the line profiles generally do not match those seen in CO. None of the observed sources show any evidence in high-J (12)CO emission for shock-excitation (i.e., linewidths greater than 30 km/s).

  13. Modeling molecular hyperfine line emission

    CERN Document Server

    Keto, Eric

    2010-01-01

    In this paper we discuss two approximate methods previously suggested for modeling hyperfine spectral line emission for molecules whose collisional transitions rates between hyperfine levels are unknown. Hyperfine structure is seen in the rotational spectra of many commonly observed molecules such as HCN, HNC, NH3, N2H+, and C17O. The intensities of these spectral lines can be modeled by numerical techniques such as Lambda-iteration that alternately solve the equations of statistical equilibrium and the equation of radiative transfer. However, these calculations require knowledge of both the radiative and collisional rates for all transitions. For most commonly observed radio frequency spectral lines, only the net collisional rates between rotational levels are known. For such cases, two approximate methods have been suggested. The first method, hyperfine statistical equilibrium (HSE), distributes the hyperfine level populations according to their statistical weight, but allows the population of the rotationa...

  14. The broad Fe K line profile in NGC 4151

    CERN Document Server

    Wang, J; Wang, T; Wang, Junxian.; Zhou, Youyuan.; Wang, Tinggui.

    1999-01-01

    We present an analysis of the Fe K line profile of NGC 4151 by using long ASCA observation data obtained in May 1995. The unprecedented good data quality, which is much better in the energy band around 6.4 keV than that of the famous 4.2-day ASCA observation of MCG -6-30-15 in July 1994, offers a unique opportunity to study the details of Fe K line profile. Apart from those characteristics already noticed in earlier ASCA observations on this object (Yaqoob et al. 1995): a broad and skewed profile, with a strong peak at about 6.4 keV and a large red wing extending to $\\sim$4 - 5 keV, which is remarkably similar to that of MCG -6-30-15, we also find a weak blue wing extending to about 8 keV, thanks to the good quality of the data. When fitted by a relativistic accretion disk line plus a narrow core at 6.4 keV, the data constrain the accretion disk to be nearly face-on, contrary to the edge-on geometry inferred from optical and UV observations. However, the extended blue wing can not be well fitted even after we...

  15. Recommended isolated-line profile for representing high-resolution spectroscopic transitions (IUPAC Technical Report)

    CERN Document Server

    Tennyson, Jonathan; Campargue, Alain; Csaszar, Attila G; Daumont, Ludovic; Gamache, Robert R; Hodges, Joseph T; Lisak, Daniel; Naumenko, Olga V; Rothman, Laurence S; Tran, Ha; Zobov, Nikolai F; Buldyreva, Jeanna; Boone, Chris D; De Vizia, Maria Domenica; Gianfrani, Livio; Hartmann, Jean-Michel; McPheat, Robert; Murray, Jonathan; Ngo, Ngoc Hoa; Polyansky, Oleg L; Weidmann, Damien

    2014-01-01

    The report of an IUPAC Task Group, formed in 2011 on "Intensities and line shapes in high-resolution spectra of water isotopologues from experiment and theory" (Project No. 2011-022-2-100), on line profiles of isolated high-resolution rotational-vibrational transitions perturbed by neutral gas-phase molecules is presented. The well-documented inadequacies of the Voigt profile (VP), used almost universally by databases and radiative-transfer codes, to represent pressure effects and Doppler broadening in isolated vibrational-rotational and pure rotational transitions of the water molecule have resulted in the development of a variety of alternative line-profile models. These models capture more of the physics of the influence of pressure on line shapes but, in general, at the price of greater complexity. The Task Group recommends that the partially Correlated quadratic-Speed-Dependent Hard-Collision profile should be adopted as the appropriate model for high-resolution spectroscopy. For simplicity this should b...

  16. Asymmetry of the natural line profile for the hydrogen atom.

    Science.gov (United States)

    Labzowsky, L N; Solovyev, D A; Plunien, G; Soff, G

    2001-10-01

    The asymmetry of the natural line profile for transitions in hydrogenlike atoms is evaluated within a QED framework. For the Lyman- alpha 1s-2p absorption transition in neutral hydrogen this asymmetry results in an additional energy shift of 2.929 856 Hz. For the 2s(1/2)-2p(3/2) transition it amounts to -1.512 674 Hz. As a new feature this correction turns out to be process dependent. The quoted numbers refer to the Compton-scattering process.

  17. Comparative Metabolic Flux Profiling of Melanoma Cell Lines

    Science.gov (United States)

    Scott, David A.; Richardson, Adam D.; Filipp, Fabian V.; Knutzen, Christine A.; Chiang, Gary G.; Ronai, Ze'ev A.; Osterman, Andrei L.; Smith, Jeffrey W.

    2011-01-01

    Metabolic rewiring is an established hallmark of cancer, but the details of this rewiring at a systems level are not well characterized. Here we acquire this insight in a melanoma cell line panel by tracking metabolic flux using isotopically labeled nutrients. Metabolic profiling and flux balance analysis were used to compare normal melanocytes to melanoma cell lines in both normoxic and hypoxic conditions. All melanoma cells exhibited the Warburg phenomenon; they used more glucose and produced more lactate than melanocytes. Other changes were observed in melanoma cells that are not described by the Warburg phenomenon. Hypoxic conditions increased fermentation of glucose to lactate in both melanocytes and melanoma cells (the Pasteur effect). However, metabolism was not strictly glycolytic, as the tricarboxylic acid (TCA) cycle was functional in all melanoma lines, even under hypoxia. Furthermore, glutamine was also a key nutrient providing a substantial anaplerotic contribution to the TCA cycle. In the WM35 melanoma line glutamine was metabolized in the “reverse” (reductive) direction in the TCA cycle, particularly under hypoxia. This reverse flux allowed the melanoma cells to synthesize fatty acids from glutamine while glucose was primarily converted to lactate. Altogether, this study, which is the first comprehensive comparative analysis of metabolism in melanoma cells, provides a foundation for targeting metabolism for therapeutic benefit in melanoma. PMID:21998308

  18. Transcription profiles of non-immortalized breast cancer cell lines

    Directory of Open Access Journals (Sweden)

    Holland James F

    2006-04-01

    Full Text Available Abstract Background Searches for differentially expressed genes in tumours have made extensive use of array technology. Most samples have been obtained from tumour biopsies or from established tumour-derived cell lines. Here we compare cultures of non-immortalized breast cancer cells, normal non-immortalized breast cells and immortalized normal and breast cancer cells to identify which elements of a defined set of well-known cancer-related genes are differentially expressed. Methods Cultures of cells from pleural effusions or ascitic fluids from breast cancer patients (MSSMs were used in addition to commercially-available normal breast epithelial cells (HMECs, established breast cancer cell lines (T-est and established normal breast cells (N-est. The Atlas Human Cancer 1.2 cDNA expression array was employed. The data obtained were analysed using widely-available statistical and clustering software and further validated through real-time PCR. Results According to Significance Analysis of Microarray (SAM and AtlasImage software, 48 genes differed at least 2-fold in adjusted intensities between HMECs and MSSMs (p Conclusion The expression profiles of 1176 genes were determined in finite life-span cultures of metastatic breast cancer cells and of normal breast cells. Significant differences were detected between the finite life-span breast cancer cell cultures and the established breast cancer cell lines. These data suggest caution in extrapolating information from established lines for application to clinical cancer research.

  19. Pulsational mode-typing in line profile variables. I - Four Beta Cephei stars

    Science.gov (United States)

    Campos, A. J.; Smith, M. A.

    1980-01-01

    The detailed variations of line profiles in the Beta Cephei-type variable stars Gamma Pegasi, Beta Cephei, Delta Ceti and Sigma Scorpii are modeled throughout their pulsation cycles in order to classify the dominant pulsation mode as radial or nonradial. High-dispersion Reticon observations of the variables were obtained for the Si III line at 4567 A, and line profiles broadened by radial or nonradial pulsations, rotation and radial-tangential macroturbulence were calculated based on a model atmosphere. It is found that only a radial pulsation mode can reproduce the radial velocity amplitude, changes in line asymmetry and uniform line width observed in all four stars. Results are in agreement with the color-to-light arguments of Stamford and Watson (1978), and suggest that radial pulsation plays the dominant role in the observed variations in most Beta Cephei stars. Evidence for shocks or moving shells is also found in visual line data for Sigma Scorpii and an ultraviolet line of Beta Cephei, together with evidence of smooth, secular period changes in Beta Cephei and Delta Ceti.

  20. Iron line profiles in Suzaku spectra of bare Seyfert galaxies

    CERN Document Server

    Patrick, A R; Porquet, D; Markowitz, A G; Lobban, A P; Terashima, Y

    2010-01-01

    We methodically model the broad-band Suzaku spectra of a small sample of six 'bare' Seyfert galaxies: Ark 120, Fairall 9, MCG-02-14-009, Mrk 335, NGC 7469 and SWIFT J2127.4+5654. The analysis of bare Seyferts allows a consistent and physical modelling of AGN due to a weak amount of any intrinsic warm absorption, removing the degeneracy between the spectral curvature due to warm absorption and the red-wing of the Fe K region. Through effective modelling of the broad-band spectrum and investigating the presence of narrow neutral or ionized emission lines and reflection from distant material, we obtain an accurate and detailed description of the Fe K line region using models such as laor, kerrdisk and kerrconv. Results suggest that ionized emission lines at 6.7 keV and 6.97 keV (particularly Fe XXVI) are relatively common and the inclusion of these lines can greatly affect the parameters obtained with relativistic models i.e. spin, emissivity, inner radius of emission and inclination. Moderately broad components...

  1. Multiwavelength laser line profile sensing for agricultural crop characterization

    Science.gov (United States)

    Strothmann, Wolfram; Ruckelshausen, Arno; Hertzberg, Joachim

    2014-05-01

    Triangulation-based laser line profile sensing is a widely used technique for precise and fast 3D measurement in industrial applications. More recently, it is used for applications in the area of outdoor agricultural sensing as well. However, in many agricultural applications high resolution range data by itself is insufficient. There is also a strong need for local spectral intensity information. As a consequence the combination of image-based range scanners with spectral imaging is often necessary. Under varying environmental conditions this is a tedious and error-prone problem, though. In contrast, the novel approach shown here allows capturing range data along with spectral laser reflectance and pixel-wise backscattering information at multiple, selectable wavelengths using a single sensor system. The system consists of multiple continuous wave (CW) line lasers simultaneously captured by a single monochrome imager. A system ready to capture 3 line lasers at 100 Hz was set up. Line lasers at different wavelengths in the visible and NIR range can be combined in accordance with the requirements of a specific application. Consecutively captured images are matched using sum of absolute differences (SAD) in order for tracking relative movement between the sensor system and the analyzed object. This allows normalizing images before the evaluation of reflectance and scattering. Furthermore, the SAD-based matching is used for accurate assembly of range and reflectance information gathered from different laser lines. It results in 3D point clouds with spectral laser reflectance and backscattering information at multiple, selectable wavelengths available for each point.

  2. Line Profile Measurements of the Lunar Exospheric Sodium

    Science.gov (United States)

    Oliversen, Ronald J.; Mierkiewicz, Edwin J.; Line, Michael R.; Roesler, Fred L.; Lupie, Olivia L.

    2012-01-01

    We report ongoing results of a program to measure the lunar sodium exospheric line profile from near the lunar limb out to two lunar radii (approx 3500 km). These observations are conducted from the National Solar Observatory McMath-Pierce telescope using a dual-etalon Fabry-Perot spectrometer with a resolving power of 180,600 (1.7 km/s) to measure line widths and velocity shifts of the Na D2 (5889 950 A) emission line in equatorial and polar regions at different lunar phases. The typical field of view (FOV) is 3 arcmin (approx 360 km) with an occasional smaller 1 arcmin FOV used right at the limb edge. The first data were obtained from full Moon to 3 days following full Moon (waning phase) in March 2009 as part of a demonstration run aimed at establishing techniques for a thorough study of temperatures and velocity variations in the lunar sodium exosphere. These data indicate velocity displacements from different locations off the lunar limb range between 150 and 600 m/s from the lunar rest velocity with a precision of +/- 20 to +/- 50 m/s depending on brightness. The measured Doppler line widths for observations within 10.5 arcmin of the east and south lunar limbs for observations between 5 deg and 40 deg lunar phase imply temperatures ranging decreasing from 3250 +/- 260K to 1175 +/- 150K. Additional data is now being collected on a quarterly basis since March 2011 and preliminary results will be reported.

  3. Pomegranate extract demonstrate a selective estrogen receptor modulator profile in human tumor cell lines and in vivo models of estrogen deprivation.

    Science.gov (United States)

    Sreeja, Sreekumar; Santhosh Kumar, Thankayyan R; Lakshmi, Baddireddi S; Sreeja, Sreeharshan

    2012-07-01

    Selective estrogen receptor modulators (SERMs) are estrogen receptor (ER) ligands exhibiting tissue-specific agonistic or antagonistic biocharacter and are used in the hormonal therapy for estrogen-dependent breast cancers. Pomegranate fruit has been shown to exert antiproliferative effects on human breast cancer cells in vitro. In this study, we investigated the tissue-specific estrogenic/antiestrogenic activity of methanol extract of pericarp of pomegranate (PME). PME was evaluated for antiproliferative activity at 20-320 μg/ml on human breast (MCF-7, MDA MB-231) endometrial (HEC-1A), cervical (SiHa, HeLa), ovarian (SKOV3) carcinoma and normal breast fibroblast (MCF-10A) cells. Competitive radioactive binding studies were carried out to ascertain whether PME interacts with ER. The reporter gene assay measured the estrogenic/antiestrogenic activity of PME in MCF-7 and MDA MB-231 cells transiently transfected with plasmids coding estrogen response elements with a reporter gene (pG5-ERE-luc) and wild-type ERα (hEG0-ER). PME inhibited the binding of [³H] estradiol to ER and suppressed the growth and proliferation of ER-positive breast cancer cells. PME binds ER and down-regulated the transcription of estrogen-responsive reporter gene transfected into breast cancer cells. The expressions of selected estrogen-responsive genes were down-regulated by PME. Unlike 17β-estradiol [1 mg/kg body weight (BW)] and tamoxifen (10 mg/kg BW), PME (50 and 100 mg/kg BW) did not increase the uterine weight and proliferation in ovariectomized mice and its cardioprotective effects were comparable to that of 17β-estradiol. In conclusion, our findings suggest that PME displays a SERM profile and may have the potential for prevention of estrogen-dependent breast cancers with beneficial effects in other hormone-dependent tissues.

  4. Study of H-alpha Spicule Profiles with Line Inversion Techniques

    Science.gov (United States)

    Tziotziou, K.; Kontogiannis, I.; Tsiropoula, G.; Kotrc, P.

    2008-09-01

    High resolution optical spectra of chromospheric spicules obtained in the H? line are studied together with slit-jaw filtergrams. The spectra were recorded along a vertical slit parallel to the solar limb with the HSFA2 (Horizontal-Sonnen-Forschungs-Anlage) Solar Spectrograph at Ondrejov Observatory on August 19, 2007 and show H? line profiles taken in spicules - due to the limb curvature - at different heights from the solar limb. A multi-cloud model that considers two or more spicules along the line-of-sight (LOS), together with a statistical approach that takes into account a large set of initial conditions for solving the radiative transfer equation, is used for the fitting of the observed profiles and the derivation of several parameters such as the LOS velocity, the source function, the optical thickness and the Doppler width that describe the respective spicules. The height-dependence of the shape of the observed profiles, as well as their dependence on the values of the derived parameters are studied in detail. The derived results are compared with the statistical theoretical results of a multi-cloud model where the aforementioned physical parameters, as well as a random number of spicules along the LOS were taken into account, in order to define the dependence of several spicule profile characteristics on them. Specific steps of the used procedures, as well as crucial problems are discussed.

  5. Kinetic Energy Distribution of D(2p) Atoms From Analysis of the D Lyman-a Line Profile

    Science.gov (United States)

    Ciocca, Marco; Ajello, Joseph M.; Liu, Xianming; Maki, Justin

    1997-01-01

    The absolute cross sections of the line center (slow atoms) and wings (fast atoms) and total emission line profile were measured from threshold to 400 eV. Analytical model coeffiecients are given for the energy dependence of the measured slow atom cross section.

  6. Interpreting the Mg II h and k Line Profiles of Mira Variables

    CERN Document Server

    Wood, B E; Wood, Brian E.; Karovska, Margarita

    2000-01-01

    We use radiative transfer calculations to reproduce the basic appearance of Mg II lines observed from Mira variables. These lines have centroids that are blueshifted by at least 30 km/s from the stellar rest frame. It is unlikely that flow velocities in the stellar atmospheres are this fast, so radiative transfer effects must be responsible for this behavior. Published hydrodynamic models predict the existence of cool, downflowing material above the shocked material responsible for the Mg II emission, and we demonstrate that scattering in this layer can result in Mg II profiles as highly blueshifted as those that are observed. However, our models also show that scattering within the shock plays an equally strong role in shaping the Mg II profiles, and our calculations illustrate the importance of partial redistribution and the effects of being out of ionization equilibrium.

  7. Using MERRA-2 analysis fields to simulate limb scattered radiance profiles for inhomogeneous atmospheric lines of sight: Preparation for data assimilation of OMPS LP radiances through 2D single-scattering GSLS radiative transfer model development

    Science.gov (United States)

    Loughman, R. P.; Bhartia, P. K.; Moy, L.; Kramarova, N. A.; Wargan, K.

    2016-12-01

    Many remote sensing techniques used to monitor the Earth's upper atmosphere fall into the broad category of "limb viewing" (LV) measurements, which includes any method for which the line of sight (LOS) fails to intersect the surface. Occultation, limb emission and limb scattering (LS) measurements are all LV methods that offer strong sensitivity to changes in the atmosphere near the tangent point of the LOS, due to the enhanced geometric path through the tangent layer (where the concentration also typically peaks, for most atmospheric species). But many of the retrieval algorithms used to interpret LV measurements assume that the atmosphere consists of "spherical shells", in which the atmospheric properties vary only with altitude (creating a 1D atmosphere). This assumption simplifies the analysis, but at the possible price of misinterpreting measurements made in the real atmosphere. In this presentation, we focus on the problem of LOS inhomogeneity for LS measurements made by the OMPS Limb Profiler (LP) instrument during the 2015 ozone hole period. The GSLS radiative transfer model (RTM) used in the default OMPS LP algorithms assumes a spherical-shell atmosphere defined at levels spaced 1 km apart, with extinction coefficients assumed to vary linearly with height between levels. Several recent improvements enable an updated single-scattering version of the GSLS RTM to ingest 3D MERRA-2 analysis fields (including temperature, pressure, and ozone concentration) when creating the model atmosphere, by introducing flexible altitude grids, flexible atmospheric specification along the LOS, and improved treatment of the radiative transfer within each atmospheric layer. As a result, the effect of LOS inhomogeneity on the current (1D) OMPS LP retrieval algorithm can now be studied theoretically, using realistic 3D atmospheric profiles. This work also represents a step towards enabling OMPS LP data to be ingested as part of future data assimilation efforts.

  8. Analysis of the solar coronal green line profiles from eclipse observations

    CERN Document Server

    Prabhakar, Maya; Chandrasekhar, T

    2013-01-01

    Analysis of the solar coronal green line profiles reveals information regarding the physical conditions of the solar corona like temperature, density, Doppler velocity, non-thermal velocity etc. It provides insights to the unresolved problems like the coronal heating and the acceleration of the solar winds. Recent studies have reported excess blueshifts in the coronal line profiles and are interpreted as due to nanoflare heating, type II spicules and nascent solar wind flow. We have analyzed a time series of Fabry-Perot interferograms of the solar corona obtained during the total solar eclipse of 2001 June 21 from Lusaka, Zambia. The spatial behavior of the coronal green line profiles were examined and variations in intensity, linewidth, Doppler velocity and line asymmetry were obtained. Several line profiles showed asymmetry indicating the presence of multicomponents. Such line profiles were fitted with double Gaussian curves. It has been found that 42% of the line profiles were single components, 34% were b...

  9. THE Lyα LINE PROFILES OF ULTRALUMINOUS INFRARED GALAXIES: FAST WINDS AND LYMAN CONTINUUM LEAKAGE

    Energy Technology Data Exchange (ETDEWEB)

    Martin, Crystal L.; Wong, Joseph [Department of Physics, University of California, Santa Barbara, CA, 93106 (United States); Dijkstra, Mark [Institute of Theoretical Astrophysics, University of Oslo, Postboks 1029, 0858 Oslo (Norway); Henry, Alaina [Astrophysics Science Division, Goddard Space Flight Center, Code 665, Greenbelt, MD 20771 (United States); Soto, Kurt T. [Institute for Astronomy, Department of Physics, ETH Zurich, CH-8093 Zurich (Switzerland); Danforth, Charles W., E-mail: cmartin@physics.ucsb.edu [CASA, Department of Astrophysical and Planetary Sciences, University of Colorado, 389-UCB, Boulder, CO, 80309 (United States)

    2015-04-10

    We present new Hubble Space Telescope Cosmic Origins Spectrograph far-ultraviolet (far-UV) spectroscopy and Keck Echellete optical spectroscopy of 11 ultraluminous infrared galaxies (ULIRGs), a rare population of local galaxies experiencing massive gas inflows, extreme starbursts, and prominent outflows. We detect Lyα emission from eight ULIRGs and the companion to IRAS09583+4714. In contrast to the P Cygni profiles often seen in galaxy spectra, the Lyα profiles exhibit prominent, blueshifted emission out to Doppler shifts exceeding −1000 km s{sup −1} in three H ii-dominated and two AGN-dominated ULIRGs. To better understand the role of resonance scattering in shaping the Lyα line profiles, we directly compare them to non-resonant emission lines in optical spectra. We find that the line wings are already present in the intrinsic nebular spectra, and scattering merely enhances the wings relative to the line core. The Lyα attenuation (as measured in the COS aperture) ranges from that of the far-UV continuum to over 100 times more. A simple radiative transfer model suggests the Lyα photons escape through cavities which have low column densities of neutral hydrogen and become optically thin to the Lyman continuum in the most advanced mergers. We show that the properties of the highly blueshifted line wings on the Lyα and optical emission-line profiles are consistent with emission from clumps of gas condensing out of a fast, hot wind. The luminosity of the Lyα emission increases nonlinearly with the ULIRG bolometric luminosity and represents about 0.1–1% of the radiative cooling from the hot winds in the H ii-dominated ULIRGs.

  10. The Lyα Line Profiles of Ultraluminous Infrared Galaxies: Fast Winds and Lyman Continuum Leakage

    Science.gov (United States)

    Martin, Crystal L.; Dijkstra, Mark; Henry, Alaina; Soto, Kurt T.; Danforth, Charles W.; Wong, Joseph

    2015-04-01

    We present new Hubble Space Telescope Cosmic Origins Spectrograph far-ultraviolet (far-UV) spectroscopy and Keck Echellete optical spectroscopy of 11 ultraluminous infrared galaxies (ULIRGs), a rare population of local galaxies experiencing massive gas inflows, extreme starbursts, and prominent outflows. We detect Lyα emission from eight ULIRGs and the companion to IRAS09583+4714. In contrast to the P Cygni profiles often seen in galaxy spectra, the Lyα profiles exhibit prominent, blueshifted emission out to Doppler shifts exceeding -1000 km s-1 in three H ii-dominated and two AGN-dominated ULIRGs. To better understand the role of resonance scattering in shaping the Lyα line profiles, we directly compare them to non-resonant emission lines in optical spectra. We find that the line wings are already present in the intrinsic nebular spectra, and scattering merely enhances the wings relative to the line core. The Lyα attenuation (as measured in the COS aperture) ranges from that of the far-UV continuum to over 100 times more. A simple radiative transfer model suggests the Lyα photons escape through cavities which have low column densities of neutral hydrogen and become optically thin to the Lyman continuum in the most advanced mergers. We show that the properties of the highly blueshifted line wings on the Lyα and optical emission-line profiles are consistent with emission from clumps of gas condensing out of a fast, hot wind. The luminosity of the Lyα emission increases nonlinearly with the ULIRG bolometric luminosity and represents about 0.1-1% of the radiative cooling from the hot winds in the H ii-dominated ULIRGs.

  11. Fundamental Parameter Method Applied to X-Ray Line Profile Analysis

    OpenAIRE

    Florica Matei; Nicolae Aldea; Marius Rada; Ioana Pop

    2016-01-01

    Crystallite size strain effect the mechanical, electric, magnetic and optical properties of many kind of the nanomaterials. The effects of the finite crystallite size and lattice strain can be very well observed as the deformation in the shape of the X-ray line profile (XRLP). In this contribution we have used the fundamental parameter (FP) [1,2] method to evaluate the nanostructure materials assuming a theoretical model of experimental XRLP.  In this contribution we have used various distrib...

  12. A study of the Lyman-$\\alpha$ line profile in DBA white dwarfs

    CERN Document Server

    Genest-Beaulieu, C

    2016-01-01

    The hydrogen abundances in DBA white dwarfs determined from optical or UV spectra have been reported to differ significantly in some studies. We revisit this problem using our own model atmospheres and synthetic spectra, and present a theoretical investigation of the Lyman-$\\alpha$ line profile as a function of effective temperature and hydrogen abundance. We identify one possible solution to this discrepancy and show considerable improvement from a detailed analysis of optical and UV spectra of DBA stars.

  13. Comparative Proteomic Profiling of Pancreatic Ductal Adenocarcinoma Cell Lines

    Science.gov (United States)

    Kim, Yikwon; Han, Dohyun; Min, Hophil; Jin, Jonghwa; Yi, Eugene C.; Kim, Youngsoo

    2014-01-01

    Pancreatic cancer is one of the most fatal cancers and is associated with limited diagnostic and therapeutic modalities. Currently, gemcitabine is the only effective drug and represents the preferred first-line treatment for chemotherapy. However, a high level of intrinsic or acquired resistance of pancreatic cancer to gemcitabine can contribute to the failure of gemcitabine treatment. To investigate the underlying molecular mechanisms for gemcitabine resistance in pancreatic cancer, we performed label-free quantification of protein expression in intrinsic gemcitabine-resistant and - sensitive human pancreatic adenocarcinoma cell lines using our improved proteomic strategy, combined with filter-aided sample preparation, single-shot liquid chromatography-mass spectrometry, enhanced spectral counting, and a statistical method based on a power law global error model. We identified 1931 proteins and quantified 787 differentially expressed proteins in the BxPC3, PANC-1, and HPDE cell lines. Bioinformatics analysis identified 15 epithelial to mesenchymal transition (EMT) markers and 13 EMT-related proteins that were closely associated with drug resistance were differentially expressed. Interestingly, 8 of these proteins were involved in glutathione and cysteine/methionine metabolism. These results suggest that proteins related to the EMT and glutathione metabolism play important roles in the development of intrinsic gemcitabine resistance by pancreatic cancer cell lines. PMID:25518923

  14. Fourier-Doppler Imaging of Line Profile Variations in ζ Ophiuchi

    Science.gov (United States)

    Jankov, S.; Janot-Pacheco, E.; Leister, N. V.

    2000-09-01

    We present, for the first time, the Fourier-Doppler Imaging (FDI) analysis of periodic line profile variations in a ζ Oph-type star. For this purpose we obtained, in the period from 1996 May 3 to May 5, a total of 242 high-resolution, high signal-to-noise ratio spectra of the Be star ζ Oph itself. Using the FDI technique, we examine the variations in both time and wavelength and complement it with time series analysis. This kind of analysis is valid for both the nonradial pulsator model and the rotation modulation model, but we discuss the results in terms of the former model, considering it the more likely explanation for the observed line profile variability. Two distinct groups of modes are detected: medium (4high-degree modes (which could be associated with 13high-frequency oscillations were strongly confined to an equatorial belt narrower than 20° and that the line profile variability was caused predominantly by sectoral modes, although tesseral modes |m|=l-1 are not excluded in taking into account the effect of fast rotation. We discuss the modal nature of the waves with respect to the characteristic oscillation periods in the corotating frame and the high amplitude of the projected rotational velocity variations (~20 km s-1).

  15. Thermonuclear Supernovae: Probing Magnetic Fields by Late-Time IR Line Profiles

    CERN Document Server

    Penney, R

    2014-01-01

    We study the imprint of magnetic fields B on late-time IR line profiles and light curves of Type Ia Supernovae. As a benchmark, we use the explosion of a Chandrasekhar mass M_{Ch White Dwarf (WD) and, specifically, a delayed detonation model. We assume WDs with initial magnetic surface fields between 1 and 1E9G. We discuss large-scale dipole and small-scale magnetic fields. We find that the [Fe II] line at 1.644 mu can be used to analyze the overall chemical and density structure of the exploding WD up to day 200 without considering B. Subsequently, positron transport and magnetic field effects become important. By day 500, the profile becomes sensitive to the morphology of B and directional dependent for dipole fields. Small or no directional dependence of the spectra is found for small-scale B. After about 200 days, persistent broad-line, flat-topped or stumpy profiles require high density burning which is the signature of a WD close to M_Ch. Narrow peaked profiles are a signature of chemical mixing or sub-...

  16. Assembly line performance and modeling

    National Research Council Canada - National Science Library

    Rane, Arun B; Sunnapwar, Vivek K

    2017-01-01

    Automobile sector forms the backbone of manufacturing sector. Vehicle assembly line is important section in automobile plant where repetitive tasks are performed one after another at different workstations...

  17. Computer Profiling Based Model for Investigation

    Directory of Open Access Journals (Sweden)

    Neeraj Choudhary

    2011-10-01

    Full Text Available Computer profiling is used for computer forensic analysis, and proposes and elaborates on a novel model for use in computer profiling, the computer profiling object model. The computer profiling object model is an information model which models a computer as objects with various attributes and inter-relationships. These together provide the information necessary for a human investigator or an automated reasoning engine to make judgments as to the probable usage and evidentiary value of a computer system. The computer profiling object model can be implemented so as to support automated analysis to provide an investigator with the informationneeded to decide whether manual analysis is required.

  18. Modelling of asymmetric nebulae. II. Line profiles

    Directory of Open Access Journals (Sweden)

    Christophe Morisset

    2006-01-01

    Full Text Available Presentamos una herramienta, VELNEB 3D, que puede ser aplicada a resultados de códigos de fotoionización 1D o 3D para generar perfiles de líneas de emisión, mapas posición-velocidad y mapas 3D en cualquier línea de emisión suponiendo un campo de velocidad arbitrario. Presentamos algunos ejemplos, basados en nuestro pseudo-3D código de fotoionización NEBU_3D (Morisset et al. 2005 que demuestran las capacidades y la utilidad de nuestra herramienta. Un ejemplo muestra que perfiles complejos pueden ser generados con una ley de expansión simple si la nebulosa es bipolar y la rendija está ligeramente fuera del centro. Otro ejemplo muestra varias maneras de producir perfiles de líneas que pueden ser atribuidos a un campo de velocidad turbulento pero sin turbulencia en el modelo. Un tercer ejemplo muestra como en algunas circunstancias es posible discriminar entre dos estructuras geométricas muy diferentes –aquí una “ampolla de frente” y su “impostor esférico" - cuando uno usa espectros apropiados de alta resolución. Finalmente mostramos que nuestra herramienta puede generar mapas en 3D, parecidos a los que se obtienen para nebulosas extendidas observadas con unidades de campo integrado.

  19. Reprocessed emission line profiles from dense clouds in geometrically thick accretion engines

    CERN Document Server

    Hartnoll, S A; Hartnoll, Sean A.

    2000-01-01

    The central engines of active galactic nuclei (AGN) contain cold, dense material as well as hot X-ray emitting gas. The standard paradigm for the engine geometry is a cold thin disc sandwiched between hot X-ray coronae. Strong support for this geometry in Seyferts comes from the study of fluorescent iron line profiles, although the evidence is not ubiquitously air tight. The thin disc model of line profiles in AGN and in X-ray binaries should be bench marked against other plausible possibilities. One proposed alternative is an engine consisting of dense clouds embedded in an optically thin, geometrically thick X-ray emitting engine. This model is further motivated by studies of geometrically thick engines such as advection dominated accretion flows (ADAFs). Here we compute the reprocessed iron line profiles from dense clouds embedded in geometrically thick, optically thin X-ray emitting discs near a Schwarzchild black hole. We consider a range of cloud distributions and disc solutions, including ADAFs, pure r...

  20. Correlation between asymmetric profiles in slits and standard prewetting lines

    Directory of Open Access Journals (Sweden)

    Leszek Szybisz

    2009-09-01

    Full Text Available The adsorption of Ar on substrates of Li is investigated within the framework of a density functional theory which includes an effective pair potential recently proposed. This approach yields good results for the surface tension of the liquid-vapor interface. The behavior of the adsorbate in the cases of a single planar wall and a slit geometry is analyzed as a function of temperature. Asymmetric density profiles are found for fluid confined in a slit built up of two identical planar walls leading to the spontaneous symmetry breaking (SSB effect. We found that the asymmetric solutions occur even above the wetting temperature $T_w$ in a range of average densities $ho^*_{ssb1} le ho^*_{av} le ho^*_{ssb2}$, which diminishes with increasing temperatures until its disappearance at the critical prewetting point $T_{m cpw}$. In this way a correlation between the disappearance of the SSB effect and the end of prewetting lines observed in the adsorption on a one-wall planar substrate is established. In addition, it is shown that a value for $T_{m cpw}$ can be precisely determined by analyzing the asymmetry coefficients.

  1. The implementation of non-Voigt line profiles in the HITRAN database: H2 case study

    Science.gov (United States)

    Wcisło, P.; Gordon, I. E.; Tran, H.; Tan, Y.; Hu, S.-M.; Campargue, A.; Kassi, S.; Romanini, D.; Hill, C.; Kochanov, R. V.; Rothman, L. S.

    2016-07-01

    Experimental capabilities of molecular spectroscopy and its applications nowadays require a sub-percent or even sub-per mille accuracy of the representation of the shapes of molecular transitions. This implies the necessity of using more advanced line-shape models which are characterized by many more parameters than a simple Voigt profile. It is a great challenge for modern molecular spectral databases to store and maintain the extended set of line-shape parameters as well as their temperature dependences. It is even more challenging to reliably retrieve these parameters from experimental spectra over a large range of pressures and temperatures. In this paper we address this problem starting from the case of the H2 molecule for which the non-Voigt line-shape effects are exceptionally pronounced. For this purpose we reanalyzed the experimental data reported in the literature. In particular, we performed detailed line-shape analysis of high-quality spectra obtained with cavity-enhanced techniques. We also report the first high-quality cavity-enhanced measurement of the H2 fundamental vibrational mode. We develop a correction to the Hartmann-Tran profile (HTP) which adjusts the HTP to the particular model of the velocity-changing collisions. This allows the measured spectra to be better represented over a wide range of pressures. The problem of storing the HTP parameters in the HITRAN database together with their temperature dependences is also discussed.

  2. Assembly line performance and modeling

    Science.gov (United States)

    Rane, Arun B.; Sunnapwar, Vivek K.

    2017-03-01

    Automobile sector forms the backbone of manufacturing sector. Vehicle assembly line is important section in automobile plant where repetitive tasks are performed one after another at different workstations. In this thesis, a methodology is proposed to reduce cycle time and time loss due to important factors like equipment failure, shortage of inventory, absenteeism, set-up, material handling, rejection and fatigue to improve output within given cost constraints. Various relationships between these factors, corresponding cost and output are established by scientific approach. This methodology is validated in three different vehicle assembly plants. Proposed methodology may help practitioners to optimize the assembly line using lean techniques.

  3. Dichromatic confusion lines and color vision models.

    Science.gov (United States)

    Fry, G A

    1986-12-01

    An attempt has been made to explain how dichromatic confusion lines can be used in building a model for color vision. In the König color vision model the fundamental colors are located on the mixture diagram at the copunctal points for protanopes, deuteranopes, and tritanopes. In Fry's model the copunctal points fall on the alychne and cannot represent the fundamental colors. On a constant luminance diagram the confusion lines for the different dichromats are sets of parallel lines. This arrangement of the confusion lines can be explained in terms of a zone theory of color vision.

  4. Effect of a progressive sound wave on the profiles of spectral lines. 2: Asymmetry of faint Fraunhofer lines. [absorption spectra

    Science.gov (United States)

    Kostyk, R. I.

    1974-01-01

    The absorption coefficient profile was calculated for lines of different chemical elements in a medium with progressive sound waves. Calculations show that (1) the degree and direction of asymmetry depend on the atomic ionization potential and the potential of lower level excitation of the individual line; (2) the degree of asymmetry of a line decreases from the center toward the limb of the solar disc; and (3) turbulent motions 'suppress' the asymmetry.

  5. Geometric design and simulation of tooth profile using elliptical segments as its line of action

    Institute of Scientific and Technical Information of China (English)

    王建; 罗善明; 苏德瑜; 常雪峰

    2015-01-01

    A mathematical model of gear tooth profiles using the ellipse curve, whose curvature is convenient to control by changing the mathematical parameters as its line of action, was built based on the meshing theory. The equation of undercutting condition was derived from the model. A special epicycloidal tooth profile was also presented. An example gear drive with variation of the ellipse parameters was taken to illustrate the proposed method. The contact ratio of the gear drive designed by the proposed method was analyzed. A comparison of the property of the gear drive designed with the involute gear drive was also carried out. The results confirm that the proposed gear drive has higher contact ratio in comparison with the involute gear drive.

  6. Kinetic-Energy Distribution of D(2p) Atoms from Analysis of the D Lyman-Alpha Line Profile

    Science.gov (United States)

    Ciocca, M.; Ajello, Joseph M.; Liu, Xianming; Maki, Justin

    1997-01-01

    The kinetic-energy distribution of D(2p) atoms resulting from electron-impact dissociation of D2 has been measured. A high-resolution vacuum ultraviolet spectrometer was employed for the first measurement of the D Lyman-alpha (D L(alpha)) emission line profiles at 20- and 100-eV excitation energies. Analysis of the deconvoluted line profile of D L(alpha) at 100 eV reveals the existence of a narrow line central peak of 29+/-2 mA full width at half maximum and a broad pedestal wing structure about 190 mA wide. The wings of the line can be used to determine the fast atom distribution. The wings of D L(alpha) arise from dissociative excitation of a series of doubly excited states that cross the Franck-Condon region between 23 and 40 eV. The fast atom distribution at 100-eV electron impact energy spans the energy range from 1 to 10 eV with a peak value near 6 eV. Slow D(2p) atoms characterized by a distribution function with peak energy near 100 meV produce the central peak profile, which is nearly independent of the impact energy. The deconvoluted line profiles of the central peak at 20 eV for dissociative excitation of D2 and H2 are fitted with an analytical function for use in calibration of space flight instrumentation equipped with a D/H absorption cell. The kinetic-energy and line profile results are compared to similar measurements for H2. The absolute cross sections for the line center (slow atoms) and wings (fast atoms) and total emission line profile were measured from threshold to 400 eV. Analytical model coefficients are given for the energy dependence of the measured slow atom cross section.

  7. Digital Model of Railway Electric Traction Lines

    Science.gov (United States)

    Garg, Rachana; Mahajan, Priya; Kumar, Parmod

    2016-08-01

    The characteristic impedance and propagation constant define the behavior of signal propagation over the transmission lines. The digital model for railway traction lines which includes railway tracks is developed, using curve fitting technique in MATLAB. The sensitivity of this model has been computed with respect to frequency. The digital sensitivity values are compared with the values of analog sensitivity. The developed model is useful for digital protection, integrated operation, control and planning of the system.

  8. Digital Model of Railway Electric Traction Lines

    Science.gov (United States)

    Garg, Rachana; Mahajan, Priya; Kumar, Parmod

    2017-08-01

    The characteristic impedance and propagation constant define the behavior of signal propagation over the transmission lines. The digital model for railway traction lines which includes railway tracks is developed, using curve fitting technique in MATLAB. The sensitivity of this model has been computed with respect to frequency. The digital sensitivity values are compared with the values of analog sensitivity. The developed model is useful for digital protection, integrated operation, control and planning of the system.

  9. Line profiles of water for the photon dominated region and embedded sources in the S140 region

    CERN Document Server

    Poelman, D R

    2006-01-01

    A radiative transfer method for the treatment of molecular lines is presented. We apply this method to previous SWAS and ISO observations of water vapor in the source S140 in order to make models to plan for, and to interpret, HIFI data. Level populations are calculated with the use of a three-dimensional (multi-zone) escape probability method and with a long characteristic code that uses Monte Carlo techniques with fixed directions. Homogeneous and inhomogeneous models are used to compute the differences between water line profiles across the S140 region. We find that when an outflow or infall velocity field with a gradient of a few kms^{-1} is adopted, line profiles with a FWHM of 6 kms^{-1} are found, in agreement with observations. Inhomogeneous models are favoured to produce a single-peaked line profile. When zooming in on smaller regions within the PDR, the shapes of the line profiles start to differ due to the different temperature and density distributions there. The embedded sources are traced by hig...

  10. Hudson River Sub-Bottom Profile Lines_r09272010

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Subbottom Profiler Tracklines. Data was collected November 5 to December 15, 2009, in the estuary north from Saugerties to Troy. Fugro utilized the GeoAcoustics...

  11. Variations of flaring kernel sizes in various parts of the H-alpha line profile

    CERN Document Server

    Radziszewski, K

    2012-01-01

    We analyze the temporal variations of the sizes and emission intensities of thirtyone flaring kernels in various parts of the H{\\alpha} line profile. We have found that the areas of all kernels decrease systematically when observed in consecutive wavelengths toward the wings of the H{\\alpha} line, but their areas and emission intensity vary in time. Our results are in agreement with the commonly accepted model of the glass-shaped lower parts of the magnetic flaring loops channelling high energy variable particle beams toward the chromospheric plasma. High time resolution spectral-imaging data used in our work were collected using the Large Coronagraph and Horizontal Telescope equipped with the Multi-channel Subtractive Double Pass Spectrograph and the Solar Eclipse Coronal Imaging System (MSDP-SECIS) at the Bia{\\l}k\\'ow Observatory of the University of Wroc{\\l}aw, Poland.

  12. Analysis of the coronal green line profiles: evidence of excess blueshifts

    CERN Document Server

    Raju, K P; Ashok, N M

    2011-01-01

    The coronal green line (Fe XIV 5303 A) profiles were obtained from Fabry-Perot interferometric observations of the solar corona during the total solar eclipse of 21 June 2001 from Lusaka, Zambia. The instrumental width is about 0.2 A and the spectral resolution is about 26000. About 300 line profiles were obtained within a radial range of 1.0-1.5 R\\odot and position angle coverage of about 240\\circ. The line profiles were fitted with single Gaussian and their intensity, Doppler velocity, and line width have been obtained. Also obtained are the centroids of the line profiles which give a measure of line asymmetry. The histograms of Doppler velocity show excess blueshifts while the centroids reveal a pre-dominant blue wing in the line profiles. It has been found that the centroids and the Doppler velocities are highly correlated. This points to the presence of multiple components in the line profiles with an excess of blueshifted components. We have then obtained the(Blue-Red) wing intensity which clearly revea...

  13. Genetic parameters and crossbreeding effects of fat deposition and fatty acid profiles in Iberian pig lines.

    Science.gov (United States)

    Ibáñez-Escriche, N; Magallón, E; Gonzalez, E; Tejeda, J F; Noguera, J L

    2016-01-01

    The aim of this study was to estimate the genetic and environmental parameters and crossbreeding effects on fatty acid and fat traits in the Iberian pig. Our final goal is to explore target selection traits and define crossbreeding strategies. The phenotypes were obtained under intensive management from 470 animals in a diallelic experiment involving Retinto, Torbiscal, and Entrepelado lines. The data set was composed of backfat thickness at the fourth rib (BFT), intramuscular fat (IMF) in the longissimus thoracis (LT), and the fatty acid profile for IMF and subcutaneous fat (SCF) traits. Data were analyzed through a Bayesian bivariate animal model by using a reparameterization of Dickerson's model. The results obtained showed an important genetic determinism for all traits analyzed with heritability ranging from 0.09 to 0.67. The common environment litter effect also had an important effect on IMF (0.34) and its fatty acid composition (0.06-0.53) at slaughter. The additive genetic correlation between BFT and IMF (additive genetic correlation [] = 0.31) suggested that it would be possible to improve lean growth independent of the IMF with an appropriate selection index. Furthermore, the high additive genetic correlation ( = 0.68) found between MUFA tissues would seem to indicate that either the LT or SCF could be used as the reference tissue for MUFA selection. The relevance of the crossbreeding parameters varied according to the traits analyzed. Backfat thickness at the fourth rib and the fatty acid profile of the IMF showed relevant differences between crosses, mostly due to line additive genetic effects associated with the Retinto line. On the contrary, those for IMF crosses were probably mainly attributable to heterosis effects. Particularly, heterosis effects were relevant for the Retinto and Entrepelado crosses (approximately 16% of the trait), which could be valuable for a crossbreeding system involving these lines.

  14. Modelling line emission of deuterated H3+ from prestellar cores

    Science.gov (United States)

    Sipilä, O.; Hugo, E.; Harju, J.; Asvany, O.; Juvela, M.; Schlemmer, S.

    2010-01-01

    Context. The depletion of heavy elements in cold cores of interstellar molecular clouds can lead to a situation where deuterated forms of H3+ are the most useful spectroscopic probes of the physical conditions. Aims: The aim is to predict the observability of the rotational lines of H2D+ and D2H+ from prestellar cores. Methods: Recently derived rate coefficients for the H3+ + H2 isotopic system were applied to the “complete depletion” reaction scheme to calculate abundance profiles in hydrostatic core models. The ground-state lines of H2D+(o) (372 GHz) and D2H+(p) (692 GHz) arising from these cores were simulated. The excitation of the rotational levels of these molecules was approximated by using the state-to-state coefficients for collisions with H2. We also predicted line profiles from cores with a power-law density distribution advocated in some previous studies. Results: The new rate coefficients introduce some changes to the complete depletion model, but do not alter the general tendencies. One of the modifications with respect to the previous results is the increase of the D3+ abundance at the cost of other isotopologues. Furthermore, the present model predicts a lower H2D+ (o/p) ratio, and a slightly higher D2H+ (p/o) ratio in very cold, dense cores, as compared with previous modelling results. These nuclear spin ratios affect the detectability of the submm lines of H2D+(o) and D2H+(p). The previously detected H2D+ and D2H+ lines towards the core I16293E, and the H2D+ line observed towards Oph D can be reproduced using the present excitation model and the physical models suggested in the original papers.

  15. The morphologies of breast cancer cell lines in three-dimensionalassays correlate with their profiles of gene expression

    Energy Technology Data Exchange (ETDEWEB)

    Kenny, Paraic A.; Lee, Genee Y.; Myers, Connie A.; Neve, RichardM.; Semeiks, Jeremy R.; Spellman, Paul T.; Lorenz, Katrin; Lee, Eva H.; Barcellos-Hoff, Mary Helen; Petersen, Ole W.; Gray, Joe W.; Bissell, MinaJ.

    2007-01-31

    3D cell cultures are rapidly becoming the method of choice for the physiologically relevant modeling of many aspects of non-malignant and malignant cell behavior ex vivo. Nevertheless, only a limited number of distinct cell types have been evaluated in this assay to date. Here we report the first large scale comparison of the transcriptional profiles and 3D cell culture phenotypes of a substantial panel of human breast cancer cell lines. Each cell line adopts a colony morphology of one of four main classes in 3D culture. These morphologies reflect, at least in part, the underlying gene expression profile and protein expression patterns of the cell lines, and distinct morphologies were also associated with tumor cell invasiveness and with cell lines originating from metastases. We further demonstrate that consistent differences in genes encoding signal transduction proteins emerge when even tumor cells are cultured in 3D microenvironments.

  16. XRAYL: a program for producing idealized powder diffraction line profiles from overlapped powder patterns

    Energy Technology Data Exchange (ETDEWEB)

    Hubbard, C.R.; Morosin, B. [Sandia National Labs., Albuquerque, NM (United States); Stewart, J.M. [Maryland Univ., College Park, MD (United States)

    1996-09-01

    The X-ray diffraction patterns of samples of polycrystalline materials are used to identify and characterize phases. Very often the total (or composite) profile consists of a series of overlapping profiles. In many applications it is necessary to separate the component profiles from the total profile. (In this document the terms {ital profile, line}, and {ital peak} are used interchangeably to represent these features of X-ray or neutron diffraction patterns.) A computer program, XRAYL, first developed in the 1980s and subsequently enlarged and improved, allows the fitting of analytical functions to powder diffraction lines. The fitting process produces parameters of chosen profile functions, diffraction line by diffraction line. The resulting function parameters may then be used to generate ``idealized`` powder diffraction lines as counts at steps in 2{Omega}. The generated lines are effectively free of statistical noise and contributions from overlapping lines. Each separated line extends to background on both sides of the generated profile. XRAYL may, therefore, be used in X-ray powder diffraction profile analysis as a preprocessor program that is, separating peaks and feeding the ``resolved`` data to subsequent analysis programs. This self- contained document includes: (1) a description of the fitting functions coded into XRAYL, (2) an outline of the least-squares algorithm used in fitting the profile function, (3) the file formats and contents utilized by the computer code, (4) the user options and their presentation requirements for execution of the program, (5) an example of input and output for a test case, and (6) source code listings on a diskette.

  17. A UML profile for framework modeling

    Institute of Scientific and Technical Information of China (English)

    XU Xiao-liang(徐小良); WANG Le-yu(汪乐宇); ZHOU Hong(周泓)

    2004-01-01

    The current standard Unified Modeling Language(UML) could not model framework flexibility and extendibility adequately due to lack of appropriate constructs to distinguish framework hot-spots from kernel elements. A new UML profile that may customize UML for framework modeling was presented using the extension mechanisms of UML, providing a group of UML extensions to meet the needs of framework modeling. In this profile, the extended class diagrams and sequence diagrams were defined to straightforwardly identify the hot-spots and describe their instantiation restrictions. A transformation model based on design patterns was also put forward, such that the profile based framework design diagrams could be automatically mapped to the corresponding implementation diagrams. It was proved that the presented profile makes framework modeling more straightforwardly and therefore easier to understand and instantiate.

  18. A UML profile for framework modeling.

    Science.gov (United States)

    Xu, Xiao-liang; Wang, Le-yu; Zhou, Hong

    2004-01-01

    The current standard Unified Modeling Language(UML) could not model framework flexibility and extendability adequately due to lack of appropriate constructs to distinguish framework hot-spots from kernel elements. A new UML profile that may customize UML for framework modeling was presented using the extension mechanisms of UML, providing a group of UML extensions to meet the needs of framework modeling. In this profile, the extended class diagrams and sequence diagrams were defined to straightforwardly identify the hot-spots and describe their instantiation restrictions. A transformation model based on design patterns was also put forward, such that the profile based framework design diagrams could be automatically mapped to the corresponding implementation diagrams. It was proved that the presented profile makes framework modeling more straightforwardly and therefore easier to understand and instantiate.

  19. Seismic lines with digital seg-y profiles, northern Afghanistan (segyafg.shp)

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — This shapefile contains polylines that describe the location of seismic lines in northern Afghanistan for which digital seismic profiles in seg-y format are...

  20. Inhomogeneous speed effects on H2 vibrational line profiles in ternary mixtures

    Science.gov (United States)

    Joubert, P.; Bruet, X.; Bonamy, J.; Robert, D.; Chaussard, F.; Saint-Loup, R.; Berger, H.

    2000-12-01

    A study of speed inhomogeneous broadening of the hydrogen vibrational line profiles in the collisional regime for ternary mixtures is reported. The Q(1) line of H2 in H2-Ar-N2, H2-He-Ar, and H2-He-N2 mixtures is investigated by high resolution stimulated Raman spectroscopy for various concentrations and temperatures. A model, successfully used for binary mixtures, is extended to ternary mixtures. An excellent agreement is obtained between theory and experiment for H2-Ar-N2, by using the collisional parameters previously obtained from binary mixtures study. For H2-He-Ar and H2-He-N2, H2-He collisions play a "hardening" effect in the H2 soft speed memory mechanism for H2-Ar or H2-N2. The present experimental results allow us, via the frame of our model, to determine the "hardness" parameter values for H2-He (inaccessible from binary mixtures data) and to get an accurate description of the spectral line shape. This study should be useful for hydrogen coherent anti-Stokes Raman spectroscopy thermometry in H2/air flames at high pressure through its possible extension to the H2-N2-H2O system.

  1. A line-profile analysis of the large-amplitude beta Cephei star xi1 Canis Majoris

    NARCIS (Netherlands)

    Saesen, S.; Briquet, M.; Aerts, C.C.

    2006-01-01

    We present a detailed line-profile study of the beta Cephei star xi1 Canis Majoris, for which we have assembled numerous high-resolution spectra over a period of 4.5 years. It is the first time that the line-profile variations of this star have been analysed. We focused on the Si III line profiles c

  2. Towards Accurate Modeling of Moving Contact Lines

    CERN Document Server

    Holmgren, Hanna

    2015-01-01

    A main challenge in numerical simulations of moving contact line problems is that the adherence, or no-slip boundary condition leads to a non-integrable stress singularity at the contact line. In this report we perform the first steps in developing the macroscopic part of an accurate multiscale model for a moving contact line problem in two space dimensions. We assume that a micro model has been used to determine a relation between the contact angle and the contact line velocity. An intermediate region is introduced where an analytical expression for the velocity exists. This expression is used to implement boundary conditions for the moving contact line at a macroscopic scale, along a fictitious boundary located a small distance away from the physical boundary. Model problems where the shape of the interface is constant thought the simulation are introduced. For these problems, experiments show that the errors in the resulting contact line velocities converge with the grid size $h$ at a rate of convergence $...

  3. Interface Profiles near Three-Phase Contact Lines in Electric Fields

    NARCIS (Netherlands)

    Buehrle, Juergen; Herminghaus, Stephan; Mugele, Frieder

    2003-01-01

    Long-range electrostatic fields deform the surface profile of a conductive liquid in the vicinity of the contact line. We have investigated the equilibrium profiles by balancing electrostatic and capillary forces locally at the liquid vapor interface. Numerical results show that the contact angle at

  4. Models of Five Absorption Line Systems Along the Line of Sight Toward PG0117+213

    CERN Document Server

    Masiero, J R; Ding, J; Churchill, C W; Kacprzak, G G

    2005-01-01

    We present our investigation into the physical conditions of the gas in five intervening quasar absorption line systems along the line of sight toward the quasar PG 0117+213, with redshifts of z=0.57, z=0.72, z=1.04, z=1.32 and z=1.34. Photoionization modeling of HST, Keck I, and Palomar data, using the code Cloudy, is employed to derive densities and metallicities of the multiple phases of gas required to fit the absorption profile for each system. We discuss the implications of these models for galaxy evolution, including the interpretation of ``CIV deficiency'' and damped Lyman alpha absorbers (DLAs), and the relationships between galaxy morphology, galaxy luminosity, and absorption signature.

  5. Searching for Line Profile Variability in HgMn Stars

    CERN Document Server

    Turcotte, S; Knoglinger, P

    2002-01-01

    Spectra of four non-magnetic chemically peculiar late B type stars (HgMn) stars are analysed to detect periodic spectral line variations (LPVs). A procedure developed to study LPVs in Slowly Pulsating B stars has been adopted as pulsational properties of HgMn stars should be expected to be similar. In the preliminary results discussed here no conclusive evidence for periodic LPVs was uncovered. A more sensitive re-analysis of the data is under way.

  6. Internet Teaching By Style: Profiling the On-line Professor

    Directory of Open Access Journals (Sweden)

    Sharon Strand

    2000-01-01

    Full Text Available The goal of this article is to offer the results of a pilot study which examined the personality type and teaching style preferences of faculty who elected to teach an on-line course. The article will present a description of personality assessments, including the Myers-Briggs Type Indicator (MBTI and Anthony Gregorc's Transaction Ability Inventory used to determine teaching tendencies and styles. In addition, a structured written questionnaire developed by the researchers was used to assess teacher satisfaction with worldwide web-based instruction. Utilizing the results of these psychological assessments, a preliminary analysis of the personal characteristics of college professors who chose to teach on line will be presented. This pilot study found that some preferred teaching styles may be more compatible with the dynamics of distance learning formats. By determining successful teaching styles for on-line courses, we can develop more effective faculty development programs to assist others in successfully transitioning into the cyber-teaching and learning environment.

  7. Computational models for analyzing lipoprotein profiles

    NARCIS (Netherlands)

    Graaf, A.A. de; Schalkwijk, D.B. van

    2011-01-01

    At present, several measurement technologies are available for generating highly detailed concentration-size profiles of lipoproteins, offering increased diagnostic potential. Computational models are useful in aiding the interpretation of these complex datasets and making the data more accessible f

  8. Model to Design Drip Hose Lateral Line

    Science.gov (United States)

    Ludwig, Rafael; Cury Saad, João Carlos

    2014-05-01

    Introduction The design criterion for non-pressure compensating drip hose is normally to have 10% of flow variation (Δq) in the lateral line, corresponding to 20% of head pressure variation (ΔH). Longer lateral lines in drip irrigation systems using conventional drippers provide cost reduction, but it is necessary to obtain to the uniformity of irrigation [1]. The use of Δq higher levels can provide longer lateral lines. [4] proposes the use of a 30% Δq and he found that this value resulted in distribution uniformity over 80%. [1] considered it is possible to extend the lateral line length using two emitters spacing in different section. He assumed that the spacing changing point would be at 40% of the total length, because this is approximately the location of the average flow according with [2]. [3] found that, for practical purposes, the average pressure is located at 40% of the length of the lateral line and that until this point it has already consumed 75% of total pressure head loss (hf ). In this case, the challenge for designers is getting longer lateral lines with high values of uniformity. Objective The objective of this study was to develop a model to design longer lateral lines using non-pressure compensating drip hose. Using the developed model, the hypotheses to be evaluated were: a) the use of two different spacing between emitters in the same lateral line allows longer length; b) it is possible to get longer lateral lines using high values of pressure variation in the lateral lines since the distribution uniformity stays below allowable limits. Methodology A computer program was developed in Delphi® based on the model developed and it is able to design lateral lines in level using non-pressure compensating drip hose. The input data are: desired distribution uniformity (DU); initial and final pressure in the lateral line; coefficients of relationship between emitter discharge and pressure head; hose internal diameter; pipe cross-sectional area

  9. Measurement of Plasma Ion Temperature and Flow Velocity from Chord-Averaged Emission Line Profile

    Indian Academy of Sciences (India)

    Xu Wei

    2011-03-01

    The distinction between Doppler broadening and Doppler shift has been analysed, the differences between Gaussian fitting and the distribution of chord-integral line shape have also been discussed. Local ion temperature and flow velocity have been derived from the chord-averaged emission line profile by a chosen-point Gaussian fitting technique.

  10. An extreme, blueshifted iron line profile in the Narrow Line Seyfert 1 PG 1402+261; an edge-on accretion disk or highly ionized absorption?

    CERN Document Server

    Reeves, J N; Turner, T J

    2004-01-01

    We report on a short XMM-Newton observation of the radio-quiet Narrow Line Seyfert 1 PG 1402+261. The EPIC X-ray spectrum of PG 1402+261 shows a strong excess of counts between 6-9 keV in the rest frame. This feature can be modeled by an unusually strong (equivalent width 2 keV) and very broad (FWHM velocity of 110000 km/s) iron K-shell emission line. The line centroid energy at 7.3 keV appears blue-shifted with respect to the iron Kalpha emission band between 6.4-6.97 keV, while the blue-wing of the line extends to 9 keV in the quasar rest frame. The line profile can be fitted by reflection from the inner accretion disk, but an inclination angle of >60 deg is required to model the extreme blue-wing of the line. Furthermore the extreme strength of the line requires a geometry whereby the hard X-ray emission from PG 1402+261 above 2 keV is dominated by the pure-reflection component from the disk, while little or none of the direct hard power-law is observed. Alternatively the spectrum above 2 keV may instead b...

  11. On the origins of C IV absorption profile diversity in broad absorption line quasars

    CERN Document Server

    Baskin, Alexei; Hamann, Fred

    2015-01-01

    There is a large diversity in the C IV broad absorption line (BAL) profile among BAL quasars (BALQs). We quantify this diversity by exploring the distribution of the C IV BAL properties, FWHM, maximum depth of absorption and its velocity shift ($v_{\\rm md}$), using the SDSS DR7 quasar catalogue. We find the following: (i) Although the median C IV BAL profile in the quasar rest-frame becomes broader and shallower as the UV continuum slope ($\\alpha_{\\rm UV}$ at 1700-3000 A) gets bluer, the median individual profile in the absorber rest-frame remains identical, and is narrow (FWHM = 3500 km/s) and deep. Only 4 per cent of BALs have FWHM > 10,000 km/s. (ii) As the He II emission equivalent-width (EW) decreases, the distributions of FWHM and $v_{\\rm md}$ extend to larger values, and the median maximum depth increases. These trends are consistent with theoretical models in which softer ionizing continua reduce overionization, and allow radiative acceleration of faster BAL outflows. (iii) As $\\alpha_{\\rm UV}$ become...

  12. Epoch-dependent absorption line profile variability in lambda Cep

    CERN Document Server

    Uuh-Sonda, J M; Eenens, P; Mahy, L; Palate, M; Gosset, E; Flores, C A

    2014-01-01

    We present the analysis of a multi-epoch spectroscopic monitoring campaign of the O6Ief star lambda Cep. Previous observations reported the existence of two modes of non-radial pulsations in this star. Our data reveal a much more complex situation. The frequency content of the power spectrum considerably changes from one epoch to the other. We find no stable frequency that can unambiguously be attributed to pulsations. The epoch-dependence of the frequencies and variability patterns are similar to what is seen in the wind emission lines of this and other Oef stars, suggesting that both phenomena likely have the same, currently still unknown, origin.

  13. Genetic profiling reveals an alarming rate of cross-contamination among human cell lines used in China.

    Science.gov (United States)

    Ye, Fang; Chen, Chuguang; Qin, Jian; Liu, Jie; Zheng, Congyi

    2015-10-01

    Cell lines are widely used as in vitro model systems in biologic and medical research. However, much of the research has been invalidated by the unwitting use of false cell lines. A significant proportion of the research involving human cell lines was initiated in China. Paradoxically, the cell lines used in China have never been authenticated. Here, we present a comprehensive survey of cross-contamination in 380 samples from 113 independent sources in China using short tandem repeat profiling methods. High levels of cross-contamination were uncovered (95 of 380, 25%). Notable false cell lines (e.g., KB and WISH) are still actively used under their false identity and tissue attributions. Most strikingly, 85.51% of lines established in China were misidentified (59 of 69) and accounted for over half of the misidentifications (59 of 95, 62.11%). Further, 93.22% of the contaminants in cell lines established in laboratories of China were HeLa cells or a possible hybrid of HeLa with an unknown cell line. Results from these misidentified lines have been published in thousands of potentially erroneous articles and may have distorted the findings visible to the scientific community. False lines have been used in drug screening, potentially leading to unusable or even harmful therapeutic strategies. We also noted the causes of contamination and provided suggestions for remediation.

  14. A CpG island hypermethylation profile of primary colorectal carcinomas and colon cancer cell lines

    Directory of Open Access Journals (Sweden)

    Rognum Torleiv O

    2004-10-01

    Full Text Available Abstract Background Tumor cell lines are commonly used as experimental tools in cancer research, but their relevance for the in vivo situation is debated. In a series of 11 microsatellite stable (MSS and 9 microsatellite unstable (MSI colon cancer cell lines and primary colon carcinomas (25 MSS and 28 MSI with known ploidy stem line and APC, KRAS, and TP53 mutation status, we analyzed the promoter methylation of the following genes: hMLH1, MGMT, p16INK4a (CDKN2A α-transcript, p14ARF (CDKN2A β-transcript, APC, and E-cadherin (CDH1. We compared the DNA methylation profiles of the cell lines with those of the primary tumors. Finally, we examined if the epigenetic changes were associated with known genetic markers and/or clinicopathological variables. Results The cell lines and primary tumors generally showed similar overall distribution and frequencies of gene methylation. Among the cell lines, 15%, 50%, 75%, 65%, 20% and 15% showed promoter methylation for hMLH1, MGMT, p16INK4a, p14ARF, APC, and E-cadherin, respectively, whereas 21%, 40%, 32%, 38%, 32%, and 40% of the primary tumors were methylated for the same genes. hMLH1 and p14ARF were significantly more often methylated in MSI than in MSS primary tumors, whereas the remaining four genes showed similar methylation frequencies in the two groups. Methylation of p14ARF, which indirectly inactivates TP53, was seen more frequently in tumors with normal TP53 than in mutated samples, but the difference was not statistically significant. Methylation of p14ARF and p16INK4a was often present in the same primary tumors, but association to diploidy, MSI, right-sided location and female gender was only significant for p14ARF. E-cadherin was methylated in 14/34 tumors with altered APC further stimulating WNT signaling. Conclusions The present study shows that colon cancer cell lines are in general relevant in vitro models, comparable with the in vivo situation, as the cell lines display many of the same

  15. Absorption line profile recovery based on TDLS and MEMS micro-mirror for photoacoustic gas sensing.

    Science.gov (United States)

    Li, Li; Arsad, Norhana; Stewart, George; Thursby, Graham; Uttamchandani, Deepak; Culshaw, Brian; Yi-ding, Wang

    2011-07-01

    A novel and efficient absorption line recovery technique is presented. A micro-electromechanical systems (MEMS) mirror driven by an electrothermal actuator is used to generate laser intensity modulation through the mirror reflection. Tunable diode laser spectroscopy (TDLS) and photoacoustic spectroscopy (PAS) are used to recover the target absorption line profile which is compared with the theoretical Voigt profile. The target gas is 0.01% acetylene (C2H2) in a nitrogen host gas. The laser diode wavelength is swept across the P17 absorption line of acetylene at 1535.4 nm by a current ramp, and an erbium-doped fibre amplifier (EDFA) is used to enhance the optical intensity and increase the signal-to-noise ratio (SNR). A SNR of about 35 is obtained with 100 mW laser power from the EDFA. Good agreement is achieved between the experimental results and the theoretical simulation for the P17 absorption line profile.

  16. Absorption Line Profile Recovery Based on TDLS and MEMS Micro-Mirror for Photoacoustic Gas Sensing

    Institute of Scientific and Technical Information of China (English)

    LI Li; Norhana Arsad; George Stewart; Graham Thursby; Deepak Uttamchandani; Brian Culshaw; WANG Yi-ding

    2011-01-01

    A novel and efficient absorption line recovery technique is presented. A micro-electromechanical systems (MEMS) mirror driven by an electrothermal actuator is used to generate laser intensity modulation through the mirror reflection. Tunable diode laser spectroscopy (TDLS) and photoacoustic spectroscopy (PAS) are used to recover the target absorption line profile which is compared with the theoretical Voigt profile. The target gas is 0.01% acetylene (C2 H2 ) in a nitrogen host gas. The laser diode wavelength is swept across the P17 absorption line of acetylene at 1 535.4 nm by a current ramp, and an erbium-doped fibre amplifier (EDFA) is used to enhance the optical intensity and increase the signal-to-noise ratio (SNR). A SNR of about 35 is obtained with 100 mW laser power from the EDFA Good agreement is achieved between the experimental results and the theoretical simulation for the P17 absorption line profile.

  17. Variability of Hell and hydrogen line profiles in the spectrum of HD 93521

    Science.gov (United States)

    Rzaev, A. Kh.; Panchuk, V. E.

    2008-03-01

    We have studied the variability of the Hell λλ 4686 and 5411 Å H β, and H α lines in the spectrum of the pulsating star HD 93521. All these line profiles display the same variability pattern relative to the average profiles: a sinusoidal wave that moves systematically from the short-to the long-wavelength wing of the profile. This variability is due to non-radial pulsations. To study the pulsation movements and stratification of the radial velocity in the atmosphere of HD 93521, we analyzed the variability of the radial velocities measured individually for the blue and red halves of the absorption profile at the half-level of the line intensity. The periods and amplitudes of this radial-velocity variability are different for different lines and are well correlated with their central depths. In the transition from weak to strong lines (i.e., from lower to upper layers of the atmosphere), the period of the radial-velocity variations measured using both halves of the absorption profile increases, while its amplitude decreases. When the morphology and variability of photospheric and wind-driven lines are compared, it is clear that the variability of their absorption components is due to the same process—non-radial pulsations. In this way, the non-radial pulsations partly affect the variability of the stellar wind. The effect of the stellar wind on the profiles of strong lines is observed as a variable absorption feature that moves along the profiles synchronous with the axial rotation of the star.

  18. Fundamental Parameter Method Applied to X-Ray Line Profile Analysis

    Directory of Open Access Journals (Sweden)

    Florica Matei

    2016-11-01

    Full Text Available Crystallite size strain effect the mechanical, electric, magnetic and optical properties of many kind of the nanomaterials. The effects of the finite crystallite size and lattice strain can be very well observed as the deformation in the shape of the X-ray line profile (XRLP. In this contribution we have used the fundamental parameter (FP [1,2] method to evaluate the nanostructure materials assuming a theoretical model of experimental XRLP.  In this contribution we have used various distribution functions such as normal, lognormal, Gumbel, Maxwell and Student. The best values of the crystallite size of nanostructued materials are chosen by analysis of root mean squares of residuals and by correlation matrix of the fit parameters. The entire procedure was implemented in the GnuPlot script.

  19. Genome-wide nucleosome occupancy and DNA methylation profiling of four human cell lines

    Directory of Open Access Journals (Sweden)

    Aaron L. Statham

    2015-03-01

    Full Text Available DNA methylation and nucleosome positioning are two key mechanisms that contribute to the epigenetic control of gene expression. During carcinogenesis, the expression of many genes is altered alongside extensive changes in the epigenome, with repressed genes often being associated with local DNA hypermethylation and gain of nucleosomes at their promoters. However the spectrum of alterations that occur at distal regulatory regions has not been extensively studied. To address this we used Nucleosome Occupancy and Methylation sequencing (NOMe-seq to compare the genome-wide DNA methylation and nucleosome occupancy profiles between normal and cancer cell line models of the breast and prostate. Here we describe the bioinformatic pipeline and methods that we developed for the processing and analysis of the NOMe-seq data published by (Taberlay et al., 2014 [1] and deposited in the Gene Expression Omnibus with accession GSE57498.

  20. Statistical modelling of transcript profiles of differentially regulated genes

    Directory of Open Access Journals (Sweden)

    Sergeant Martin J

    2008-07-01

    Full Text Available Abstract Background The vast quantities of gene expression profiling data produced in microarray studies, and the more precise quantitative PCR, are often not statistically analysed to their full potential. Previous studies have summarised gene expression profiles using simple descriptive statistics, basic analysis of variance (ANOVA and the clustering of genes based on simple models fitted to their expression profiles over time. We report the novel application of statistical non-linear regression modelling techniques to describe the shapes of expression profiles for the fungus Agaricus bisporus, quantified by PCR, and for E. coli and Rattus norvegicus, using microarray technology. The use of parametric non-linear regression models provides a more precise description of expression profiles, reducing the "noise" of the raw data to produce a clear "signal" given by the fitted curve, and describing each profile with a small number of biologically interpretable parameters. This approach then allows the direct comparison and clustering of the shapes of response patterns between genes and potentially enables a greater exploration and interpretation of the biological processes driving gene expression. Results Quantitative reverse transcriptase PCR-derived time-course data of genes were modelled. "Split-line" or "broken-stick" regression identified the initial time of gene up-regulation, enabling the classification of genes into those with primary and secondary responses. Five-day profiles were modelled using the biologically-oriented, critical exponential curve, y(t = A + (B + CtRt + ε. This non-linear regression approach allowed the expression patterns for different genes to be compared in terms of curve shape, time of maximal transcript level and the decline and asymptotic response levels. Three distinct regulatory patterns were identified for the five genes studied. Applying the regression modelling approach to microarray-derived time course data

  1. Closed surface modeling with helical line measurement data

    Institute of Scientific and Technical Information of China (English)

    LI Ruqiong; LI Guanghu; WANG Yuhan

    2007-01-01

    Models for surface modeling of free-form surface and massive data points are becoming an important feature in commercial computer aided design/computer-aided manu- facturing software. However, there are many problems to be solved in this area, especially for closed free-form surface modeling. This article presents an effective method for cloud data closed surface modeling from asynchronous profile modeling measurement. It includes three steps: first, the cloud data are preprocessed for smoothing; second, a helical line is segmented to form triangle meshes; and third, Bezier surface patches are created over a triangle mesh and trimmed to shape on an entire surface. In the end, an illustrative example of shoe last surface modeling is given to show the availability of this method.

  2. On the synthesis of resonance lines in dynamical models of structured hot-star winds

    Science.gov (United States)

    Puls, J.; Owocki, S. P.; Fullerton, A. W.

    1993-01-01

    We examine basic issues involved in synthesizing resonance-line profiles from 1-D, dynamical models of highly structured hot-star winds. Although these models exhibit extensive variations in density as well as velocity, the density scale length is still typically much greater than the Sobolev length. The line transfer is thus treated using a Sobolev approach, as generalized by Rybicki & Hummer (1978) to take proper account of the multiple Sobolev resonances arising from the nonmonotonic velocity field. The resulting reduced-lambda-matrix equation describing nonlocal coupling of the source function is solved by iteration, and line profiles are then derived from formal solution integration using this source function. Two more approximate methods that instead use either a stationary or a structured, local source function yield qualitatively similar line-profiles, but are found to violate photon conservation by 10% or more. The full results suggest that such models may indeed be able to reproduce naturally some of the qualitative properties long noted in observed UV line profiles, such as discrete absorption components in unsaturated lines, or the blue-edge variability in saturated lines. However, these particular models do not yet produce the black absorption troughs commonly observed in saturated lines, and it seems that this and other important discrepancies (e.g., in acceleration time scale of absorption components) may require development of more complete models that include rotation and other 2-D and/or 3-D effects.

  3. Modeling and characterization of multiple coupled lines

    Science.gov (United States)

    Tripathi, Alok

    1999-10-01

    A configuration-oriented circuit model for multiple coupled lines in an inhomogeneous medium is developed and presented in this thesis. This circuit model consists of a network of uncoupled transmission lines and is readily modeled with simulation tools like LIBRA© and SPICE ©. It provides an equivalent circuit representation which is simple and topologically meaningful as compared to the model based on modal decomposition. The configuration-oriented model is derived by decomposing the immittance matrices associated with an n coupled line 2n-port system. Time- and frequency- domain simulations of typical coupled line multiports are included to exemplify the utility of the model. The model is useful for the simulation and design of general single and multilayer coupled line components, such as filters and couplers, and for the investigation of signal integrity issues including crosstalk in interconnects associated with high speed digital and mixed signal electronic modules and packages. It is shown that multiconductor lossless structures in an inhomogeneous medium can be characterized by multiport time-domain reflection (MR) measurements. A synthesis technique of an equivalent lossless (non-dispersive) uniform multiconductor n coupled lines (UMCL) 2n-port system from the measured discrete time-domain reflection response is presented. This procedure is based on the decomposition of the characteristic immittance matrices of the UMCL in terms of partial mode immittance matrices. The decomposition scheme leads to the discrete transition matrix function of a UMCL 2n-port system. This in turn establishes a relationship between the normal-mode parameters of the UMCL and the measured impulse reflection and transmission response. Equivalence between the synthesis procedure presented in this thesis and the solution of a special form of an algebraic Riccati matrix equation whose solution can lead to the normal-mode parameters and a real termination network is illustrated. In

  4. Measurement the Thermal Profile of Steelmaking Ladle with Subsequent Evaluation the Reasons of Lining Damage

    Directory of Open Access Journals (Sweden)

    Vlček J.

    2016-03-01

    Full Text Available Based on the operational measurement, of which content was to determine ladle thermal profile, there were analysed causes of possible damage of lining in steel ladles by steel breakout through the ladle shell. There exists connection between thermal state of ladle lining during the operation and its lifetime. There were reached to the conclusion that the cause of failure in the lining of ladle is except for high temperature of bath, also wide interval of temperature change during the tap operation, in consequence with possible insufficient pre-heating of ladle, discontinuous operation of aggregate and damage of insulating lining layer, respectively deformation of ladles shell.

  5. Statistical Model Checking for Product Lines

    DEFF Research Database (Denmark)

    ter Beek, Maurice H.; Legay, Axel; Lluch Lafuente, Alberto

    2016-01-01

    average cost of products (in terms of the attributes of the products’ features) and the probability of features to be (un)installed at runtime. The product lines must be modelled in QFLan, which extends the probabilistic feature-oriented language PFLan with novel quantitative constraints among features......We report on the suitability of statistical model checking for the analysis of quantitative properties of product line models by an extended treatment of earlier work by the authors. The type of analysis that can be performed includes the likelihood of specific product behaviour, the expected...... and on behaviour and with advanced feature installation options. QFLan is a rich process-algebraic specification language whose operational behaviour interacts with a store of constraints, neatly separating product configuration from product behaviour. The resulting probabilistic configurations and probabilistic...

  6. He I lines in B stars - Comparison of non-local thermodynamic equilibrium models with observations

    Science.gov (United States)

    Heasley, J. N.; Timothy, J. G.; Wolff, S. C.

    1982-01-01

    Profiles of He gamma-gamma 4026, 4387, 4471, 4713, 5876, and 6678 have been obtained in 17 stars of spectral type B0-B5. Parameters of the nonlocal thermodynamic equilibrium models appropriate to each star are determined from the Stromgren index and fits to H-alpha line profiles. These parameters yield generally good fits to the observed He I line profiles, with the best fits being found for the blue He I lines where departures from local thermodynamic equilibrium are relatively small. For the two red lines it is found that, in the early B stars and in stars with log g less than 3.5, both lines are systematically stronger than predicted by the nonlocal thermodynamic equilibrium models.

  7. On-line (HPLC-NMR) and off-line phytochemical profiling of the Australian plant, Lasiopetalum macrophyllum.

    Science.gov (United States)

    Timmers, Michael; Urban, Sylvia

    2012-05-01

    On-line (HPLC-NMR) and off-line (HPLC, NMR and MS) methodologies were used to profile the constituents present in the crude extract of Lasiopetalum macrophyllum. On-flow and stop-flow HPLC-NMR supported the presence of trans-tiliroside and permitted partial identification of cis-tiliroside and 4'-methoxy-trans-tiliroside. Off-line isolation led to the unequivocal identification of four flavanoid glycosides including a new structural derivative, 4'-methoxycis-tiliroside. This is the first report of flavonoid glycosides occurring in this plant genus. In addition, a number of structure revisions have been proposed for previously reported flavonoid glycosides that were incorrectly assigned.

  8. Electron density profile measurements from hydrogen line intensity ratio method in Versatile Experiment Spherical Torus

    Science.gov (United States)

    Kim, YooSung; Shi, Yue-Jiang; Yang, Jeong-hun; Kim, SeongCheol; Kim, Young-Gi; Dang, Jeong-Jeung; Yang, Seongmoo; Jo, Jungmin; Oh, Soo-Ghee; Chung, Kyoung-Jae; Hwang, Y. S.

    2016-11-01

    Electron density profiles of versatile experiment spherical torus plasmas are measured by using a hydrogen line intensity ratio method. A fast-frame visible camera with appropriate bandpass filters is used to detect images of Balmer line intensities. The unique optical system makes it possible to take images of Hα and Hβ radiation simultaneously, with only one camera. The frame rate is 1000 fps and the spatial resolution of the system is about 0.5 cm. One-dimensional local emissivity profiles have been obtained from the toroidal line of sight with viewing dumps. An initial result for the electron density profile is presented and is in reasonable agreement with values measured by a triple Langmuir probe.

  9. Photoionisation modelling of the broad line region

    Science.gov (United States)

    King, Anthea

    2016-08-01

    Two of the most fundamental questions regarding the broad line region (BLR) are "what is its structure?" and "how is it moving?" Baldwin et al. (1995) showed that by summing over an ensemble of clouds at differing densities and distances from the ionising source we can easily and naturally produce a spectrum similar to what is observed for AGN. This approach is called the `locally optimally emitting clouds' (LOC) model. This approach can also explain the well-observed stratification of emission lines in the BLR (e.g. Clavel et al. 1991, Peterson et al. 1991, Kollatschny et al. 2001) and `breathing' of BLR with changes in the continuum luminosity (Netzer & Mor 1990, Peterson et al. 2014) and is therefore a generally accepted model of the BLR. However, LOC predictions require some assumptions to be made about the distribution of the clouds within the BLR. By comparing photoionization predictions, for a distribution of cloud properties, with observed spectra we can infer something about the structure of the BLR and distribution of clouds. I use existing reverberation mapping data to constrain the structure of the BLR by observing how individual line strengths and ratios of different lines change in high and low luminosity states. I will present my initial constraints and discuss the challenges associated with the method.

  10. Planetary Gear Profile Modification Design Based on Load Sharing Modelling

    Institute of Scientific and Technical Information of China (English)

    IGLESIAS Miguel; FERNÁNDEZ DEL RINCÓN Alfonso; DE-JUAN Ana Magdalena; GARCIA Pablo; DIEZ Alberto; VIADERO Fernando

    2015-01-01

    In order to satisfy the increasing demand on high performance planetary transmissions, an important line of research is focused on the understanding of some of the underlying phenomena involved in this mechanical system. Through the development of models capable of reproduce the system behavior, research in this area contributes to improve gear transmission insight, helping developing better maintenance practices and more efficient design processes. A planetary gear model used for the design of profile modifications ratio based on the levelling of the load sharing ratio is presented. The gear profile geometry definition, following a vectorial approach that mimics the real cutting process of gears, is thoroughly described. Teeth undercutting and hypotrochoid definition are implicitly considered, and a procedure for the incorporation of a rounding arc at the tooth tip in order to deal with corner contacts is described. A procedure for the modeling of profile deviations is presented, which can be used for the introduction of both manufacturing errors and designed profile modifications. An easy and flexible implementation of the profile deviation within the planetary model is accomplished based on the geometric overlapping. The contact force calculation and dynamic implementation used in the model are also introduced, and parameters from a real transmission for agricultural applications are presented for the application example. A set of reliefs is designed based on the levelling of the load sharing ratio for the example transmission, and finally some other important dynamic factors of the transmission are analyzed to assess the changes in the dynamic behavior with respect to the non-modified case. Thus, the main innovative aspect of the proposed planetary transmission model is the capacity of providing a simulated load sharing ratio which serves as design variable for the calculation of the tooth profile modifications.

  11. Fast inversion of Zeeman line profiles using central moments. II. Stokes V moments and determination of vector magnetic fields

    Science.gov (United States)

    Mein, P.; Uitenbroek, H.; Mein, N.; Bommier, V.; Faurobert, M.

    2016-06-01

    Context. In the case of unresolved solar structures or stray light contamination, inversion techniques using four Stokes parameters of Zeeman profiles cannot disentangle the combined contributions of magnetic and nonmagnetic areas to the observed Stokes I. Aims: In the framework of a two-component model atmosphere with filling factor f, we propose an inversion method restricting input data to Q , U, and V profiles, thus overcoming ambiguities from stray light and spatial mixing. Methods: The V-moments inversion (VMI) method uses shifts SV derived from moments of V-profiles and integrals of Q2, U2, and V2 to determine the strength B and inclination ψ of a magnetic field vector through least-squares polynomial fits and with very few iterations. Moment calculations are optimized to reduce data noise effects. To specify the model atmosphere of the magnetic component, an additional parameter δ, deduced from the shape of V-profiles, is used to interpolate between expansions corresponding to two basic models. Results: We perform inversions of HINODE SOT/SP data for inclination ranges 0 <ψ< 60° and 120 <ψ< 180° for the 630.2 nm Fe i line. A damping coefficient is fitted to take instrumental line broadening into account. We estimate errors from data noise. Magnetic field strengths and inclinations deduced from VMI inversion are compared with results from the inversion codes UNNOFIT and MERLIN. Conclusions: The VMI inversion method is insensitive to the dependence of Stokes I profiles on the thermodynamic structure in nonmagnetic areas. In the range of Bf products larger than 200 G, mean field strengths exceed 1000 G and there is not a very significant departure from the UNNOFIT results because of differences between magnetic and nonmagnetic model atmospheres. Further improvements might include additional parameters deduced from the shape of Stokes V profiles and from large sets of 3D-MHD simulations, especially for unresolved magnetic flux tubes.

  12. Resonant Transmission Line Method for Econophysics models

    CERN Document Server

    Raptis, T E

    2016-01-01

    In a recent paper [1304.6846], Racorean introduced a formal similarity of the Black-Sholes stock pricing model with a Schr\\"odinger equation. We use a previously introduced method of a resonant transmission line for arbitrary 2nd order Sturm-Liouville problems to attack the same problem from a different perspective revealing some deep structures in the naturally associated eigenvalue problem.

  13. Comparisons between direct and inverse approaches in problems of recovering the true profile of a spectral line

    CERN Document Server

    Mijovic, S

    2003-01-01

    Computer-supported techniques are introduced in the evaluation of experimental data and obtaining the real profile of spectral lines. The direct and inverse approaches were used. The MINUIT program from the packets of CERN's library was used to solve direct problems. Tikhonov's regularization method was also applied to solve the same problems in an inverse manner. Model functions were introduced to check the applicability limitation of these methods and make a comparison between them as well. The advantages and disadvantages of these approaches were shown. The procedures were applied to the measured profiles of He II's spectral lines in a pulsed low-pressure arc. The chosen lines are He II Paschen-alpha (468.6 nm) in the visible region and Balmer-beta (121.5 nm) in the VUV spectral region. The range of experimental errors was determined where both approaches have given reliable results. It was found that we can obtain the real profile of He II 468.6 nm and He II 121.5 nm spectral lines, using the regularizati...

  14. Procedure for analyzing the x-ray line profiles of disordered carbons

    Energy Technology Data Exchange (ETDEWEB)

    Henry, L.G.; Bragg, R.H.; Bose, S.

    1981-12-01

    A systematic procedure to correct for various distortions in the broad x-ray line profiles of glass-like carbons (GC) is described. The profile is first corrected for distortions due to low specimen absorption, secondly for incoherent (Compton) scattering, and then strong small angle scattering. The resulting profile is then multiplied by the appropriate trigonometric (Lorentz and polarization) factors. Finally, correction is made for the variation of the atomic scattering factor across the broad peaks. Two examples of the GC heat treatment at 1000/sup 0/C and 2700/sup 0/C have been used to illustrate the outcome of the corrections. 8 figures.

  15. Neon and [CII] 158 micron Emission Line Profiles in Dusty Starbursts and Active Galactic Nuclei

    CERN Document Server

    Samsonyan, Anahit; Lebouteiller, Vianney; Barry, Donald; Sargsyan, Lusine

    2016-01-01

    The sample of 379 extragalactic sources is presented that have mid-infrared, high resolution spectroscopy with the Spitzer Infrared Spectrograph (IRS) and also spectroscopy of the [CII] 158 um line with the Herschel Photodetector Array Camera and Spectrometer (PACS). The emission line profiles of [NeII] 12.81 um, [NeIII] 15.55 um, and [CII] 158 um are presented, and intrinsic line widths are determined (full width half maximum of Gaussian profiles after instrumental correction). All line profiles together with overlays comparing positions of PACS and IRS observations are made available in the Cornell Atlas of Spitzer IRS Sources (CASSIS). Sources are classified from AGN to starburst based on equivalent widths of the 6.2 um polycyclic aromatic hydrocarbon feature. It is found that intrinsic line widths do not change among classification for [CII], with median widths of 207 km per s for AGN, 248 km per s for composites, and 233 km per s for starbursts. The [NeII] line widths also do not change with classificati...

  16. Gene expression profiling and gene copy-number changes in malignant mesothelioma cell lines.

    Science.gov (United States)

    Zanazzi, Claudia; Hersmus, Remko; Veltman, Imke M; Gillis, Ad J M; van Drunen, Ellen; Beverloo, H Berna; Hegmans, Joost P J J; Verweij, Marielle; Lambrecht, Bart N; Oosterhuis, J Wolter; Looijenga, Leendert H J

    2007-10-01

    Malignant mesothelioma (MM) is an asbestos-induced tumor that acquires aneuploid DNA content during the tumorigenic process. We used instable MM cell lines as an in vitro model to study the impact of DNA copy-number changes on gene expression profiling, in the course of their chromosomal redistribution process. Two MM cell lines, PMR-MM2 (early passages of in vitro culture) and PMR-MM7 (both early and late passages of in vitro culture), were cytogenetically characterized. Genomic gains and losses were precisely defined using microarray-based comparative genomic hybridization (array-CGH), and minimal overlapping analysis led to the identification of the common unbalanced genomic regions. Using the U133Plus 2.0 Affymetrix gene chip array, we analyzed PMR-MM7 early and late passages for genome-wide gene expression, and correlated the differentially expressed genes with copy-number changes. The presence of a high number of genetic imbalances occurring from early to late culture steps reflected the tendency of MM cells toward genomic instability. The selection of specific chromosomal abnormalities observed during subsequent cultures demonstrated the spontaneous evolution of the cancer cells in an in vitro environment. MM cell lines were characterized by copy-number changes associated with the TP53 apoptotic pathway already present at the first steps of in vitro culture. Prolonged culture led to acquisition of additional chromosomal copy-number changes associated with dysregulation of genes involved in cell adhesion, regulation of mitotic cell cycle, signal transduction, carbohydrate metabolism, motor activity, glycosaminoglycan biosynthesis, protein binding activity, lipid transport, ATP synthesis, and methyltransferase activity.

  17. Molecule survival in magnetized protostellar disk winds. II. Predicted H2O line profiles versus Herschel/HIFI observations

    CERN Document Server

    Yvart, W; Forets, G Pineau des; Ferreira, J

    2016-01-01

    We investigate whether the broad wings of H2O emission identified with Herschel towards low-mass Class 0 and Class 1 protostars may be consistent with an origin in a dusty MHD disk wind, and the constraints it would set on the underlying disk properties. We present synthetic H2O line profiles predictions for a typical MHD disk wind solution with various values of disk accretion rate, stellar mass, extension of the launching area, and view angle. We compare them in terms of line shapes and intensities with the HIFI profiles observed by the WISH Key Program. We find that a dusty MHD disk wind launched from 0.2--0.6 AU AU to 3--25 AU can reproduce to a remarkable degree the observed shapes and intensities of the broad H2O component, both in the fundamental 557 GHz line and in more excited lines. Such a model also readily reproduces the observed correlation of 557 GHz line luminosity with envelope density, if the infall rate at 1000 AU is 1--3 times the disk accretion rate in the wind ejection region. It is also ...

  18. Modeling the water line emission from the high-mass star-forming region AFGL2591

    CERN Document Server

    Poelman, D R

    2007-01-01

    Context: observations of water lines are a sensitive probe of the geometry, dynamics and chemical structure of dense molecular gas. The launch of Herschel with on board HIFI and PACS allow to probe the behaviour of multiple water lines with unprecedented sensitivity and resolution. Aims: we investigate the diagnostic value of specific water transitions in high-mass star-forming regions. As a test case, we apply our models to the AFGL2591 region. Results: in general, for models with a constant water abundance, the ground state lines, i.e., 1_(10)-1_(01), 1_(11)-0_(00), and 2_(12)-1_(01), are predicted in absorption, all the others in emission. This behaviour changes for models with a water abundance jump profile in that the line profiles for jumps by a factor of ~10-100 are similar to the line shapes in the constant abundance models, whereas larger jumps lead to emission profiles. Asymmetric line profiles are found for models with a cavity outflow and depend on the inclination angle. Models with an outflow cav...

  19. An Extreme, Blueshifted Iron-Line Profile in the Narrow-Line Seyfert 1 PG 1402+261: An Edge-on Accretion Disk or Highly Ionized Absorption?

    Science.gov (United States)

    Reeves, J. N.; Porquet, D.; Turner, T. J.

    2004-11-01

    We report on a short XMM-Newton observation of the radio-quiet narrow-line Seyfert 1 galaxy PG 1402+261. The EPIC X-ray spectrum of PG 1402+261 shows a strong excess of counts between 6 and 9 keV in the rest frame. This feature can be modeled by an unusually strong (equivalent width 2 keV) and very broad (FWHM velocity of 110,000 km s-1) iron K-shell emission line. The line centroid energy at 7.3 keV appears blueshifted with respect to the iron Kα emission band between 6.4 and 6.97 keV, while the blue wing of the line extends to 9 keV in the quasar rest frame. The line profile can be fitted by reflection from the inner accretion disk, but an inclination angle of >60° is required to model the extreme blue wing of the line. Furthermore, the extreme strength of the line requires a geometry whereby the hard X-ray emission from PG 1402+261 above 2 keV is dominated by the pure-reflection component from the disk, while little or none of the direct hard power law is observed. Alternatively, the spectrum above 2 keV may be explained by an ionized absorber, if the column density is sufficiently high (NH>3×1023 cm-2) and if the matter is ionized enough to produce a deep (τ~1) iron K-shell absorption edge at 9 keV. This absorber could originate in a large column density, high-velocity outflow, perhaps similar to those that appear to be observed in several other high accretion rate active galactic nuclei. Further observations, especially at higher spectral resolution, are required to distinguish between the accretion disk reflection and outflow scenarios.

  20. line profile variability in the B8Ia-type supergiant Rigel (β Ori)

    Science.gov (United States)

    Morrison, N. D.; Rother, R.; Kurschat, N.

    2008-04-01

    Hα observations of Rigel obtained on 184 nights during the past ten years with the 1-m telescope and ´echelle spectrograph of Ritter Observatory are surveyed. The line profiles were classified in terms of morphology. About 1/4 of them are of P Cygni type, about 15% inverse P Cygni, about 25% double-peaked, about 1/3 pure absorption, and a few are single emission lines. Transformation of the profile from one type to another typically takes a few days. Although the line stays in absorption for extended intervals, only one high-velocity absorption event of the intensity reported by Kaufer et al. (1996a) was observed, in late 2006. Late in this event, Hα absorption occurred farther to the red than the red wing of a plausible photospheric absorption component, an indication of infalling material. In general, as the absorption events come to an end, the emission typically returns with an inverse P Cygni profile. The Hα profile class shows no obvious correlation with the radial velocity of C II λ6578, a photospheric absorption line.

  1. Distorted cyclotron line profile in Cep X-4 as observed by NuSTAR

    DEFF Research Database (Denmark)

    Fürst, F.; Pottschmidt, K.; Miyasaka, H.;

    2015-01-01

    a powerlaw with a Fermi-Dirac cutoff at high energies. Cep X-4 has a very strong cyclotron resonant scattering feature (CRSF) around 30 keV. A simple absorption-like line with a Gaussian optical depth or a pseudo-Lorentzian profile both fail to describe the shape of the CRSF accurately, leaving significant...

  2. X-ray Emission Line Profiles from Wind Clump Bow Shocks in Massive Stars

    CERN Document Server

    Ignace, R; Cassinelli, J P

    2012-01-01

    The consequences of structured flows continue to be a pressing topic in relating spectral data to physical processes occurring in massive star winds. In a preceding paper, our group reported on hydrodynamic simulations of hypersonic flow past a rigid spherical clump to explore the structure of bow shocks that can form around wind clumps. Here we report on profiles of emission lines that arise from such bow shock morphologies. To compute emission line profiles, we adopt a two component flow structure of wind and clumps using two "beta" velocity laws. While individual bow shocks tend to generate double horned emission line profiles, a group of bow shocks can lead to line profiles with a range of shapes with blueshifted peak emission that depends on the degree of X-ray photoabsorption by the interclump wind medium, the number of clump structures in the flow, and the radial distribution of the clumps. Using the two beta law prescription, the theoretical emission measure and temperature distribution throughout the...

  3. Line printing solution-processable small molecules with uniform surface profile via ink-jet printer.

    Science.gov (United States)

    Liu, Huimin; Xu, Wei; Tan, Wanyi; Zhu, Xuhui; Wang, Jian; Peng, Junbiao; Cao, Yong

    2016-03-01

    Line printing offers a feasible approach to remove the pixel well structure which is widely used to confine the ink-jet printed solution. In the study, a uniform line is printed by an ink-jet printer. To achieve a uniform surface profile of the printed line, 10vol% low-volatile solvent DMA (3,4-Dimethylanisole) is mixed with high-volatile solvent Pxy (p-xylene) as the solvent. After a solution-processable small molecule is dissolved, the surface tension of DMA solution becomes lower than that of Pxy solution, which creates an inward Marangoni flow during the solvent evaporation. The inward Marangoni flow balances out the outward capillary flow, thereby forming a flat film surface. The line width of the printed line depends on the contact angle of the solution on the hole injection layer.

  4. On numerical modelling of contact lines in fluid flows

    CERN Document Server

    Pelinovsky, Dmitry E

    2013-01-01

    We study numerically a reduced model proposed by Benilov and Vynnycky (J. Fluid Mech. 718 (2013), 481), who examined the behavior of a contact line with a 180-degree contact angle between liquid and a moving plate, in the context of a two-dimensional Couette flow. The model is given by a linear fourth-order advection-diffusion equation with an unknown velocity, which is to be determined dynamically from an additional boundary condition at the contact line. The main claim of Benilov and Vynnycky is that for any physically relevant initial condition, there is a finite positive time at which the velocity of the contact line tends to negative infinity, whereas the profile of the fluid flow remains regular. Additionally, it is claimed that the velocity behaves as the logarithmic function of time near the blow-up time. We simulate dynamics of this model under different initial conditions and confirm the first claim. However, we also show that the blow-up behavior is better approximated by a power function, compared...

  5. Analysis of expression profiles of MAGE-A antigens in oral squamous cell carcinoma cell lines

    Directory of Open Access Journals (Sweden)

    Reichert Torsten E

    2009-04-01

    Full Text Available Abstract Background The immunological response to solid tumours is insufficient. Therefore, tumour specific antigens have been explored to facilitate the activation of the immune system. The cancer/testis antigen class of MAGE-A antigens is a possible target for vaccination. Their differential expression profiles also modulate the course of the cancer disease and its response to antineoplastic drugs. Methods The expression profiles of MAGE-A2, -A3, -A4, -A6 and -A10 in five own oral squamous cell carcinoma cell lines were characterised by rt-PCR, qrt-PCR and immunocytochemistry with a global MAGE-A antibody (57B and compared with those of an adult keratinocyte cell line (NHEK. Results All tumour cell lines expressed MAGE-A antigens. The antigens were expressed in groups with different preferences. The predominant antigens expressed were MAGE-A2, -A3 and -A6. MAGE-A10 was not expressed in the cell lines tested. The MAGE-A gene products detected in the adult keratinocyte cell line NHEK were used as a reference. Conclusion MAGE-A antigens are expressed in oral squamous cell carcinomas. The expression profiles measured facilitate distinct examinations in forthcoming studies on responses to antineoplastic drugs or radiation therapy. MAGE-A antigens are still an interesting aim for immunotherapy.

  6. Estimation of Mass-Loss Rates from Emission Line Profiles in the UV Spectra of Cool Stars

    Science.gov (United States)

    Carpenter, K. G.; Robinson, R. D.; Harper, G. M.

    1999-01-01

    The photon-scattering winds of cool, low-gravity stars (K-M giants and supergiants) produce absorption features in the strong chromospheric emission lines. This provides us with an opportunity to assess important parameters of the wind, including flow and turbulent velocities, the optical depth of the wind above the region of photon creation, and the star's mass-loss rate. We have used the Lamers et al. Sobolev with Exact Integration (SEI) radiative transfer code along with simple models of the outer atmospheric structure to compute synthetic line profiles for comparison with the observed line profiles. The SEI code has the advantage of being computationally fast and allows a great number of possible wind models to be examined. We therefore use it here to obtain initial first-order estimates of the wind parameters. More sophisticated, but more time-consuming and resource intensive calculations will be performed at a later date, using the SEI-deduced wind parameters as a starting point. A comparison of the profiles over a range of wind velocity laws, turbulence values, and line opacities allows us to constrain the wind parameters, and to estimate the mass-loss rates. We have applied this analysis technique (using lines of Mg II, 0 I, and Fe II) so far to four stars: the normal K5-giant alpha Tau, the hybrid K-giant gamma Dra, the K5 supergiant lambda Vel, and the M-giant gamma Cru. We present in this paper a description of the technique, including the assumptions which go into its use, an assessment of its robustness, and the results of our analysis.

  7. P-Cygni Profiles of Molecular Lines toward Arp 220 Nuclei

    CERN Document Server

    Sakamoto, Kazushi; Wilner, David J; Black, John H; Conway, John E; Costagliola, Francesco; Peck, Alison B; Spaans, Marco; Wang, Junzhi; Wiedner, Martina C

    2009-01-01

    We report ~100 pc (0.3") resolution observations of (sub)millimeter HCO+ and CO lines in the ultraluminous infrared galaxy Arp 220. The lines peak at two merger nuclei, with HCO+ being more spatially concentrated than CO. Asymmetric line profiles with blueshifted absorption and redshifted emission are discovered in HCO+(3-2) and (4-3) toward the two nuclei and in CO(3-2) toward one nucleus. We suggest that these P-Cygni profiles are due to ~100 km/s outward motion of molecular gas from the nuclei. This gas is most likely outflowing from the inner regions of the two nuclear disks rotating around individual nuclei, clearing the shroud around the luminosity sources there.

  8. ANN valuation model of material LCIA profile

    Institute of Scientific and Technical Information of China (English)

    CHEN Wei-ping; LIU Hua; ZHAO Hai-dong; ZHU Quan-li; LI Yuan-yuan

    2005-01-01

    Weighting model is the only valuation model of life cycle impact assessment(LCIA) profile now.It simplifies evaluation function into linear function,and makes the determination of weighting factor complicated.Therefore the valuation of LCIA profile is the most critical and controversial step in life cycle assessment(LCA).Development on valuation models,which are understood easily and accepted widely,is urgently needed in the field of LCA.The modeling approaches for the linear evaluation function were summed up.The modeling approaches for the nonlinear evaluation function were set up by function approximation theory,which include choosing preference products,forming preference data,establishing artificial neural network(ANN) and training ANN by preference data.By selecting 7 material products as preference product,experience was done with modeling approaches of the nonlinear evaluation function.The results show that the modeling approaches and valuation model of the nonlinear evaluation function are more practical than the weighting model.

  9. Modeling Transmission Line Networks Using Quantum Graphs

    Science.gov (United States)

    Koch, Trystan; Antonsen, Thomas

    Quantum graphs--one dimensional edges, connecting nodes, that support propagating Schrödinger wavefunctions--have been studied extensively as tractable models of wave chaotic behavior (Smilansky and Gnutzmann 2006, Berkolaiko and Kuchment 2013). Here we consider the electrical analog, in which the graph represents an electrical network where the edges are transmission lines (Hul et. al. 2004) and the nodes contain either discrete circuit elements or intricate circuit elements best represented by arbitrary scattering matrices. Including these extra degrees of freedom at the nodes leads to phenomena that do not arise in simpler graph models. We investigate the properties of eigenfrequencies and eigenfunctions on these graphs, and relate these to the statistical description of voltages on the transmission lines when driving the network externally. The study of electromagnetic compatibility, the effect of external radiation on complicated systems with numerous interconnected cables, motivates our research into this extension of the graph model. Work supported by the Office of Naval Research (N0014130474) and the Air Force Office of Scientific Research.

  10. Line emission from H II blister models

    Science.gov (United States)

    Rubin, R. H.

    1984-01-01

    Numerical techniques to calculate the thermal and geometric properties of line emission from H II 'blister' regions are presented. It is assumed that the density distributions of the H II regions are a function of two dimensions, with rotational symmetry specifying the shape in three-dimensions. The thermal and ionization equilibrium equations of the problem are solved by spherical modeling, and a spherical sector approximation is used to simplify the three-dimensional treatment of diffuse ionizing radiation. The global properties of H II 'blister' regions near the edges of a molecular cloud are simulated by means of the geometry/density distribution, and the results are compared with observational data. It is shown that there is a monotonic increase of peak surface brightness from the i = 0 deg (pole-on) observational position to the i = 90 deg (edge-on) position. The enhancement of the line peak intensity from the edge-on to the pole-on positions is found to depend on the density, stratification, ionization, and electron temperature weighting. It is found that as i increases, the position of peak line brightness of the lower excitation species is displaced to the high-density side of the high excitation species.

  11. Live image profiling of neural crest lineages in zebrafish transgenic lines.

    Science.gov (United States)

    Kwak, Jina; Park, Ok Kyu; Jung, Yoo Jung; Hwang, Byung Joon; Kwon, Seung-Hae; Kee, Yun

    2013-03-01

    Zebrafish transgenic lines are important experimental tools for lineage tracing and imaging studies. It is crucial to precisely characterize the cell lineages labeled in transgenic lines to understand their limitations and thus properly interpret the data obtained from their use; only then can we confidently select a line appropriate for our particular research objectives. Here we profiled the cell lineages labeled in the closely related neural crest transgenic lines Tg(foxd3:GFP), Tg(sox10:eGFP) and Tg(sox10:mRFP). These fish were crossed to generate embryos, in which foxd3 and sox10 transgenic neural crest labeling could be directly compared at the cellular level using live confocal imaging. We have identified key differences in the cell lineages labeled in each line during early neural crest development and demonstrated that the most anterior cranial neural crest cells initially migrating out of neural tube at the level of forebrain and anterior midbrain express sox10:eGFP and sox10:mRFP, but not foxd3:GFP. This differential profile was robustly maintained in the differentiating progeny of the neural crest lineages until 3.5dpf. Our data will enable researchers to make an informed choice in selecting transgenic lines for future neural crest research.

  12. Metabolic profiling of breast cancer: Differences in central metabolism between subtypes of breast cancer cell lines.

    Science.gov (United States)

    Willmann, Lucas; Schlimpert, Manuel; Halbach, Sebastian; Erbes, Thalia; Stickeler, Elmar; Kammerer, Bernd

    2015-09-01

    Although the concept of aerobic glycolysis in cancer was already reported in the 1930s by Otto Warburg, the understanding of metabolic pathways remains challenging especially due to the heterogeneity of cancer. In consideration of four different time points (1, 2, 4, and 7 days of incubation), GC-MS profiling of metabolites was performed on cell extracts and supernatants of breast cancer cell lines (MDA-MB-231, -453, BT-474) with different sub classification and the breast epithelial cell line MCF-10A. To the exclusion of trypsinization, direct methanolic extraction, cell scraping and cell disruption was executed to obtain central metabolites. Major differences in biochemical pathways have been observed in the breast cancer cell lines compared to the breast epithelial cell line, as well as between the breast cancer cell lines themselves. Characteristics of breast cancer subtypes could be correlated to their individual metabolic profiles. PLS-DA revealed the discrimination of breast cancer cell lines from MCF-10A based on elevated amino acid levels. The observed metabolic signatures have great potential as biomarker for breast cancer as well as an improved understanding of subtype specific phenomenons of breast cancer.

  13. The Kinematics of Quasar Broad Emission Line Regions Using a Disk-Wind Model

    Science.gov (United States)

    Yong, Suk Yee; Webster, Rachel L.; King, Anthea L.; Bate, Nicholas F.; O'Dowd, Matthew J.; Labrie, Kathleen

    2017-09-01

    The structure and kinematics of the broad line region in quasars are still unknown. One popular model is the disk-wind model that offers a geometric unification of a quasar based on the viewing angle. We construct a simple kinematical disk-wind model with a narrow outflowing wind angle. The model is combined with radiative transfer in the Sobolev, or high velocity, limit. We examine how angle of viewing affects the observed characteristics of the emission line. The line profiles were found to exhibit distinct properties depending on the orientation, wind opening angle, and region of the wind where the emission arises.

  14. Modelling Soil Profiles in their Landscape Context.

    Science.gov (United States)

    Kirkby, M. J.

    2015-12-01

    Through models, explores the relationships between the interacting drivers of soil profile evolution. Soil hydrology drives the partition of precipitation between overland flow, shallow subsurface flow and deeper percolation/ lateral flow. Critical parts of this interchange occurs close to the surface, within the zone of strong bioturbation, where inorganic composition is determined by the balance between erosion and weathering rates expressed in the chemical depletion ratio. The intensity of organic matter cycling may also limit the final composition of weathering products. Erosion rates are partly driven by the geomorphic environment, through gradient and hydrology, but also constrained by the degree of soil weathering, through particle size and mineralogy. Weathering rates are determined by water movement below the bioturbation zone and ionic diffusion from parent material, which control the rate of decline with soil depth. These interactions are explored through simple equilibrium and evolutionary models for the soil profile that are applicable across a wide range of geological and climatic environments.

  15. Actuator Line Modeling of Wind Turbine Wakes

    DEFF Research Database (Denmark)

    Troldborg, Niels

    2009-01-01

    This thesis contains a comprehensive 3D Navier-Stokes computational study of the characteristics of wakes of wind turbines operating in various flow conditions including interacting wakes between a row of turbines. The computations were carried out using the actuator line technique combined...... and it is shown that the turbines are subject to rather severe yaw moments, even in situations where the mean wind is oriented along the row. This observation is indicative of large scale dynamics of the wakes....... with the 3D Navier Stokes solver EllipSys3D and a LES turbulence model. Simple models, based on applying body forces in the computational domain, are developed for imposing sheared and turbulent infow and their validity is discussed. A few computations on stand alone turbines are compared to measurements...

  16. The LyAlpha Line Profiles of Ultraluminous Infrared Galaxies: Fast Winds and Lyman Continuum Leakage

    CERN Document Server

    Martin, Crystal L; Henry, Alaina; Soto, Kurt T; Danforth, Charles W; Wong, Joseph

    2015-01-01

    We present new Hubble Space Telescope Cosmic Origins Spectrograph far-ultraviolet (far-UV) spectroscopy and Keck Echellete optical spectroscopy of 11 ultraluminous infrared galaxies (ULIRGs), a rare population of local galaxies experiencing massive gas inflows, extreme starbursts, and prominent outflows. We detect H Lyman alpha emission from 8 ULIRGs and the companion to IRAS09583+4714. In contrast to the P Cygni profiles often seen in galaxy spectra, the H Lyman alpha profiles exhibit prominent, blueshifted emission out to Doppler shifts exceeding -1000 km/s in three HII-dominated and two AGN-dominated ULIRGs. To better understand the role of resonance scattering in shaping the H Lyman alpha line profiles, we directly compare them to non-resonant emission lines in optical spectra. We find that the line wings are already present in the intrinsic nebular spectra, and scattering merely enhances the wings relative to the line core. The H Lyman alpha attenuation (as measured in the COS aperture) ranges from that ...

  17. Oncogenic mutation profiling in new lung cancer and mesothelioma cell lines

    Directory of Open Access Journals (Sweden)

    Lam DC

    2015-01-01

    Full Text Available David CL Lam,1 Susan Y Luo,1 Wen Deng,2 Johnny SH Kwan,3 Jaime Rodriguez-Canales,4 Annie LM Cheung,5 Grace HW Cheng,6 Chi-Ho Lin,6 Ignacio I Wistuba,4 Pak C Sham,6 Thomas SK Wan,7 Sai-Wah Tsao5 1Department of Medicine, 2School of Nursing, 3Department of Psychiatry, University of Hong Kong, Hong Kong SAR, People’s Republic of China; 4Department of Translational Molecular Pathology, MD Anderson Cancer Center, University of Texas at Houston, Houston, TX, USA; 5Department of Anatomy, 6Center for Genome Sciences, 7Department of Pathology, University of Hong Kong, Hong Kong SAR, People’s Republic of China Background: Thoracic tumor, especially lung cancer, ranks as the top cancer mortality in most parts of the world. Lung adenocarcinoma is the predominant subtype and there is increasing knowledge on therapeutic molecular targets, namely EGFR, ALK, KRAS, and ROS1, among lung cancers. Lung cancer cell lines established with known clinical characteristics and molecular profiling of oncogenic targets like ALK or KRAS could be useful tools for understanding the biology of known molecular targets as well as for drug testing and screening. Materials and methods: Five new cancer cell lines were established from pleural fluid or biopsy tissues obtained from Chinese patients with primary lung adenocarcinomas or malignant pleural mesothelioma. They were characterized by immunohistochemistry, growth kinetics, tests for tumorigenicity, EGFR and KRAS gene mutations, ALK gene rearrangement and OncoSeq mutation profiling. Results: These newly established lung adenocarcinoma and mesothelioma cell lines were maintained for over 100 passages and demonstrated morphological and immunohistochemical features as well as growth kinetics of tumor cell lines. One of these new cell lines bears EML4-ALK rearrangement variant 2, two lung cancer cell lines bear different KRAS mutations at codon 12, and known single nucleotide polymorphism variants were identified in these cell

  18. Ultraviolet and Optical Line Profile Variations in the Spectrum of ɛ Persei

    Science.gov (United States)

    Gies, D. R.; Kambe, E.; Josephs, T. S.; Bagnuolo, W. G., Jr.; Choi, Y. J.; Gudehus, D.; Guyton, K. M.; Hartkopf, W. I.; Hildebrand, J. L.; Kaye, A. B.; Mason, B. D.; Riddle, R. L.; Sowers, J. W.; Turner, N. H.; Wilson, J. W.; Xiong, Y.

    1999-11-01

    The rapid variable star, ɛ Per (B0.5 IV-III), displays the largest amplitude profile fluctuations known among the growing number of massive, spectrum-variable stars. Here we present an analysis of a continuous 5 day run of IUE UV spectroscopy, and we show for the first time that the systematic, blue-to-red moving patterns observed in high-quality optical spectra are also present in the UV photospheric lines. We present cross-correlation functions of the individual spectra with that of a narrow-lined standard that produce a high signal-to-noise ratio representation of the blue-to-red moving bump patterns found in individual lines. We then use time series analysis methods to determine the periodic components of the profile variations (after reregistering the spectra to correct for binary motion). There are at least six periods present (ranging from 8.46 to 2.27 hr), and most of these signals are also found in optical line variations observed in 1986 (although the relative amplitudes have changed significantly). Furthermore, analysis of a shorter time series of IUE spectra from 1984 shows that similar periods were present then. We also present Hα and He I λ6678 profiles obtained with the Georgia State University Multi-Telescope Telescope, which were made simultaneously with IUE, and we show that the profile variations are essentially identical in the UV and optical ranges. We rule out rotational modulation and circumstellar gas obscuration as possible causes, and we suggest instead that the variations are the result of photospheric nonradial pulsations of relatively low degree (l=3-5). There were significant changes (~10%) in the equivalent widths of the UV stellar wind lines during the IUE run, and we suggest that wind strengthening events are related to episodes of large-amplitude, constructive interference between the NRP modes. Thus, intermode beating may play an important role in promoting wind loss from massive stars.

  19. Lipoprotein profiles of hepatic cell lines at various stages of differentiation.

    Science.gov (United States)

    Sasaki, Akira; Kimura, Fumiko; Miura, Mizuho; Toshima, Gen; Takahashi, Junichiro; Maruya, Sayuri; Kobayashi, Masayuki; Hata, Keishi

    2017-02-01

    We studied the lipoprotein profiles of human hepatic cells at various stages of differentiation. The production of three major classes of lipoproteins, very low-density lipoprotein (VLDL), low-density lipoprotein (LDL), and high-density lipoprotein (HDL), was detected in three well-differentiated human hepatoma cell lines and primary human hepatocytes; however, these lipoproteins were not detected in the culture medium in which undifferentiated hepatoma cell lines were grown. Reverse transcription polymerase chain reaction analysis demonstrated that the expression levels of apolipoprotein A1 (ApoA1), ApoB100, and microsomal triglyceride transfer protein (MTP) were markedly lower in the undifferentiated hepatoma cell lines than in the well-differentiated hepatoma cell lines and primary hepatocytes. These results indicate that apolipoprotein synthesis, and triglyceride-transport by MTP might be rate-limiting steps in lipoprotein production in mature hepatic cells.

  20. Genomic and phenotypic profiles of two Brazilian breast cancer cell lines derived from primary human tumors

    DEFF Research Database (Denmark)

    Corrêa, Natássia C R; Kuasne, Hellen; Faria, Jerusa A Q A

    2013-01-01

    Breast cancer is the most common type of cancer among women worldwide. Research using breast cancer cell lines derived from primary tumors may provide valuable additional knowledge regarding this type of cancer. Therefore, the aim of this study was to investigate the phenotypic profiles of MACL-1...... and MGSO-3, the only Brazilian breast cancer cell lines available for comparative studies. We evaluated the presence of hormone receptors, proliferation, differentiation and stem cell markers, using immunohistochemical staining of the primary tumor, cultured cells and xenografts implanted....... This shift in expression may be due to the selection of an 'establishment' phenotype in vitro. Whole-genome DNA evaluation showed a large amount of copy number alterations (CNAs) in the two cell lines. These findings render MACL-1 and MGSO-3 the first characterized Brazilian breast cancer cell lines...

  1. Expression profile of hypothalamic neuropeptides in chicken lines selected for high or low residual feed intake.

    Science.gov (United States)

    Sintubin, P; Greene, E; Collin, A; Bordas, A; Zerjal, T; Tesseraud, S; Buyse, J; Dridi, S

    2014-08-01

    The R(+) and R(-) chicken lines have been divergently selected for high (R(+)) or low (R(-)) residual feed intake. For the same body weight and egg production, the R(+) chickens consume 40% more food than their counterparts R(-) lines. In the present study we sought to determine the hypothalamic expression profile of feeding-related neuropeptides in these lines maintained under fed or food-deprived conditions. In the fed condition, the suppressor of cytokine signaling 3 (SOCS3) was 17-fold lower (Pfeeding-related genes that are differently expressed in the hypothalamus of R(+) and R(-) chickens and that might explain the difference in feed intake observed between the two lines. Published by Elsevier Ltd.

  2. PROJECT VeSElkA: ANALYSIS OF BALMER LINE PROFILES OF SLOWLY ROTATING CHEMICALLY PECULIAR STARS

    Energy Technology Data Exchange (ETDEWEB)

    Khalack, V.; LeBlanc, F., E-mail: khalack.viktor@umoncton.ca [Département de Physique et d’Astronomie, Université de Moncton, Moncton, N.-B., E1A 3E9 (Canada)

    2015-07-15

    We present results for the estimation of gravity, effective temperature, and radial velocity of poorly studied chemically peculiar stars recently observed with the spectropolarimeter Echelle SpectroPolarimetric Device for Observations of Stars at the Canada–France–Hawaii Telescope in the frame of the Vertical Stratification of Element Abundances project. The effective temperature and surface gravity values are determined for the very first time for four of the stars from our sample (HD 23878, HD 83373, HD 95608, and HD 164584). Grids of stellar atmosphere models with the corresponding fluxes have been calculated using version 15 of the PHOENIX code for effective temperatures in the range of 5000–15,000 K, for the logarithm of surface gravities in the range of 3.0–4.5 and for the metallicities from −1.0 to +1.5. We used these fluxes to fit the Balmer line profiles employing the code FITSB2 that produces estimates of the effective temperature, gravity, and radial velocity for each star. When possible, our results are compared to those previously published. The physical characteristics of 16 program stars are discussed with the future aim to study the abundance anomalies of chemical species and the possible vertical abundance stratification in their stellar atmosphere.

  3. Project VeSElkA: Analysis of Balmer line profiles in slowly rotating chemically peculiar stars

    CERN Document Server

    Khalack, Viktor

    2015-01-01

    We present results for the estimation of gravity, effective temperature, and radial velocity of poorly studied chemically peculiar stars recently observed with the spectropolarimeter Echelle SpectroPolarimetric Device for Observations of Stars at the Canada-France-Hawaii Telescope in the frame of the Vertical Stratification of Element Abundances project. The effective temperature and surface gravity values are determined for the very first time for four of the stars from our sample (HD23878, HD83373, HD95608, and HD164584). Grids of stellar atmosphere models with the corresponding fluxes have been calculated using version 15 of the PHOENIX code for effective temperatures in the range of 5000-15,000 K, for the logarithm of surface gravities in the range of 3.0-4.5 and for the metallicities from -1.0 to +1.5. We used these fluxes to fit the Balmer line profiles employing the code FITSB2 that produces estimates of the effective temperature, gravity, and radial velocity for each star. When possible, our results a...

  4. Structural characterization of lead sulfide thin films by means of X-ray line profile analysis

    Indian Academy of Sciences (India)

    N Choudhury; B K Sarma

    2009-02-01

    X-ray diffraction patterns of chemically deposited lead sulphide thin films have been recorded and X-ray line profile analysis studies have been carried out. The lattice parameter, crystallite size, average internal stress and microstrain in the film are calculated and correlated with molarities of the solutions. Both size and strain are found to contribute towards the broadening of X-ray diffraction line. The values of the crystallite size are found to be within the range from 22–33 nm and the values of strain to be within the range from 1.0 × 10-3–2.5 × 10-3.

  5. Gene expression profiling in chemoresistant variants of three cell lines of different origin

    DEFF Research Database (Denmark)

    Johnsson, Anders; Vallon-Christensson, Johan; Strand, Carina

    2005-01-01

    BACKGROUND: Drug resistance is a major problem in clinical cancer chemotherapy. Several mechanisms of resistance have been identified, but the underlying genomic changes are still poorly understood. MATERIALS AND METHODS: Gene expression profiling, using cDNA microarray, was performed in eight cell....... Several genes encoding ABC transporters were highly up-regulated, most notably ABCB1 (MDR1) and ABCB4 in several cell lines and ABCG2 (MXR) specifically in MX-resistant cell lines. A pronounced down-regulation of several histones was noted in the MCF-7-derived resistant sublines. Altered expression...

  6. Detailed Characterization of H_beta emission line profile in low z SDSS quasars

    OpenAIRE

    Zamfir, S.; Sulentic, J. W.; Marziani, P; D. Dultzin

    2009-01-01

    We explore the properties of the H_beta emission line profile in a large, homogeneous and bright sample of N~470 low redshift quasars extracted from Sloan Digital Sky Survey (DR5). We approach the investigation from two complementary directions: composite/median spectra and a set of line diagnostic measures (asymmetry index, centroid shift and kurtosis) in individual quasars. The project is developed and presented in the framework of the so-called 4D Eigenvector 1 (4DE1) Parameter Space, with...

  7. Interpreting metabolomic profiles using unbiased pathway models.

    Directory of Open Access Journals (Sweden)

    Rahul C Deo

    2010-02-01

    Full Text Available Human disease is heterogeneous, with similar disease phenotypes resulting from distinct combinations of genetic and environmental factors. Small-molecule profiling can address disease heterogeneity by evaluating the underlying biologic state of individuals through non-invasive interrogation of plasma metabolite levels. We analyzed metabolite profiles from an oral glucose tolerance test (OGTT in 50 individuals, 25 with normal (NGT and 25 with impaired glucose tolerance (IGT. Our focus was to elucidate underlying biologic processes. Although we initially found little overlap between changed metabolites and preconceived definitions of metabolic pathways, the use of unbiased network approaches identified significant concerted changes. Specifically, we derived a metabolic network with edges drawn between reactant and product nodes in individual reactions and between all substrates of individual enzymes and transporters. We searched for "active modules"--regions of the metabolic network enriched for changes in metabolite levels. Active modules identified relationships among changed metabolites and highlighted the importance of specific solute carriers in metabolite profiles. Furthermore, hierarchical clustering and principal component analysis demonstrated that changed metabolites in OGTT naturally grouped according to the activities of the System A and L amino acid transporters, the osmolyte carrier SLC6A12, and the mitochondrial aspartate-glutamate transporter SLC25A13. Comparison between NGT and IGT groups supported blunted glucose- and/or insulin-stimulated activities in the IGT group. Using unbiased pathway models, we offer evidence supporting the important role of solute carriers in the physiologic response to glucose challenge and conclude that carrier activities are reflected in individual metabolite profiles of perturbation experiments. Given the involvement of transporters in human disease, metabolite profiling may contribute to improved

  8. Identifying anti-growth factors for human cancer cell lines through genome-scale metabolic modeling

    DEFF Research Database (Denmark)

    Ghaffari, Pouyan; Mardinoglu, Adil; Asplund, Anna

    2015-01-01

    Human cancer cell lines are used as important model systems to study molecular mechanisms associated with tumor growth, hereunder how genomic and biological heterogeneity found in primary tumors affect cellular phenotypes. We reconstructed Genome scale metabolic models (GEMs) for eleven cell lines...... based on RNA-Seq data and validated the functionality of these models with data from metabolite profiling. We used cell line-specific GEMs to analyze the differences in the metabolism of cancer cell lines, and to explore the heterogeneous expression of the metabolic subsystems. Furthermore, we predicted...... antimetabolites using two cell lines with different phenotypic origins, and found that it is effective in inhibiting the growth of these cell lines. Using immunohistochemistry, we also showed high or moderate expression levels of proteins targeted by the validated antimetabolite. Identified anti-growth factors...

  9. Modelling Alkali Line Absorption and Molecular Bands in Cool DAZs

    CERN Document Server

    Homeier, D; Allard, F; Hauschildt, P H; Schweitzer, A; Stancil, P C; Weck, P F; Homeier, Derek; Allard, Nicole F.; Allard, France; Hauschildt, Peter H.; Schweitzer, Andreas; Stancil, Phillip C.; Weck, Philippe F.

    2005-01-01

    Two peculiar stars showing an apparent extremely broadened and strong NaI D absorption have been discovered in surveys for cool white dwarfs by Oppenheimer et al. (2001) and Harris et al. (SDSS, 2003). We discuss the nature of these objects using PHOENIX atmosphere models for metal-poor brown dwarfs/very low mass stars, and new white dwarf LTE and NLTE models for hydrogen- and helium-dominated atmospheres with metals. These include complete molecular formation in chemical equilibrium and a model for the alkali resonance line broadening based on the damping profiles of Allard et al. (2003), as well as new molecular line opacities for metal hydrides. First results of our calculations indicate good agreement with a hydrogen-dominated WD atmosphere with a Na abundance roughly consistent with a state of high accretion. We analyse deviations of the abundances of Na, K, Mg and Ca from the cosmic pattern and comment on implications of these results for standard accretion scenarios.

  10. Modelling chemical depletion profiles in regolith

    Science.gov (United States)

    Brantley, S.L.; Bandstra, J.; Moore, J.; White, A.F.

    2008-01-01

    Chemical or mineralogical profiles in regolith display reaction fronts that document depletion of leachable elements or minerals. A generalized equation employing lumped parameters was derived to model such ubiquitously observed patterns:C = frac(C0, frac(C0 - Cx = 0, Cx = 0) exp (??ini ?? over(k, ??) ?? x) + 1)Here C, Cx = 0, and Co are the concentrations of an element at a given depth x, at the top of the reaction front, or in parent respectively. ??ini is the roughness of the dissolving mineral in the parent and k???? is a lumped kinetic parameter. This kinetic parameter is an inverse function of the porefluid advective velocity and a direct function of the dissolution rate constant times mineral surface area per unit volume regolith. This model equation fits profiles of concentration versus depth for albite in seven weathering systems and is consistent with the interpretation that the surface area (m2 mineral m- 3 bulk regolith) varies linearly with the concentration of the dissolving mineral across the front. Dissolution rate constants can be calculated from the lumped fit parameters for these profiles using observed values of weathering advance rate, the proton driving force, the geometric surface area per unit volume regolith and parent concentration of albite. These calculated values of the dissolution rate constant compare favorably to literature values. The model equation, useful for reaction fronts in both steady-state erosional and quasi-stationary non-erosional systems, incorporates the variation of reaction affinity using pH as a master variable. Use of this model equation to fit depletion fronts for soils highlights the importance of buffering of pH in the soil system. Furthermore, the equation should allow better understanding of the effects of important environmental variables on weathering rates. ?? 2008.

  11. Detection method of proximal caries using line profile in digital intra-oral radiography

    Energy Technology Data Exchange (ETDEWEB)

    Choi, Yong Suk; Kim, Gyu Tae; Hwang, Eui Hwan; Lee, Min Ja; Choi, Sam Jin; Park, Hun Kuk [Department of Oral and Maxillofacial Radiology, School of Dentistry and Institute of Oral Biology, Kyung Hee University, Seoul (Korea, Republic of); Park, Jeong Hoon [Department of Biomedical Engineering, College of Medicine, Kyung Hee University, Seoul (Korea, Republic of)

    2009-12-15

    The purpose of this study was to investigate how to detect proximal caries using line profile and validate linear measurements of proximal caries lesions by basic digital manipulation of radiographic images. The X-ray images of control group (15) and caries teeth (15) from patients were used. For each image, the line profile at the proximal caries-susceptible zone was calculated. To evaluate the contrast as a function of line profile to detect proximal caries, a difference coefficient (D) that indicates the relative difference between caries and sound dentin or intact enamel was measured. Mean values of D were 0.0354 {+-} 0.0155 in non-caries and 0.2632 {+-} 0.0982 in caries (p<0.001). The mean values of caries group were higher than non-caries group and there was correlation between proximal dental caries and D. It is demonstrated that the mean value of D from caries group was higher than that of control group. From the result, values of D possess great potentiality as a new detection parameter for proximal dental caries.

  12. Distinctive characteristics of transcriptional profiles from two epithelial cell lines upon interaction with Actinobacillus actinomycetemcomitans.

    Science.gov (United States)

    Mans, J J; Baker, H V; Oda, D; Lamont, R J; Handfield, M

    2006-08-01

    Transcriptional profiling and gene ontology analyses were performed to investigate the unique responses of two different epithelial cell lines to an Actinobacillus actinomycetemcomitans challenge. A total of 2867 genes were differentially regulated among all experimental conditions. The analysis of these 2867 genes revealed that the predominant specific response to infection in HeLa cells was associated with the regulation of enzyme activity, RNA metabolism, nucleoside and nucleic acid transport and protein modification. The predominant specific response in immortalized human gingival keratinocytes (IHGK) was associated with the regulation of angiogenesis, chemotaxis, transmembrane receptor protein tyrosine kinase signaling, cell differentiation, apoptosis and response to stress. Of particular interest, stress response genes were significantly - yet differently - affected in both cell lines. In HeLa cells, only three regulated genes impacted the response to stress, and the response to unfolded protein was the only term that passed the ontology filters. This strikingly contrasted with the profiles obtained for IHGK, in which 61 regulated genes impacted the response to stress and constituted an extensive network of cell responses to A. actinomycetemcomitans interaction (response to pathogens, oxidative stress, unfolded proteins, DNA damage, starvation and wounding). Hence, while extensive similarities were found in the transcriptional profiles of these two epithelial cell lines, significant differences were highlighted. These differences were predominantly found in pathways that are associated with host-pathogen interactions.

  13. Optimization of cell lines as tumour models by integrating multi-omics data.

    Science.gov (United States)

    Zhao, Ning; Liu, Yongjing; Wei, Yunzhen; Yan, Zichuang; Zhang, Qiang; Wu, Cheng; Chang, Zhiqiang; Xu, Yan

    2017-05-01

    Cell lines are widely used as in vitro models of tumorigenesis. However, an increasing number of researchers have found that cell lines differ from their sourced tumour samples after long-term cell culture. The application of unsuitable cell lines in experiments will affect the experimental accuracy and the treatment of patients. Therefore, it is imperative to identify optimal cell lines for each cancer type. Here, we review the methods used to evaluate cell lines since 2005. Furthermore, gene expression, copy number and mutation profiles from The Cancer Genome Atlas and the Cancer Cell Line Encyclopedia are used to calculate similarity between tumours and cell lines. Then, the ideal cell lines to use for experiments for eight types of cancers are found by combining the results with Gene Ontology functional similarity. After verification, the optimal cell lines have the same genomic characteristics as their homologous tumour samples. The contaminated cell lines identified in previous research are also determined to be unsuitable in vitro cancer models here. Moreover, our study suggests that some of the commonly used cell lines are not suitable cancer models. In summary, we provide a reference for ideal cell lines to use in in vitro experiments and contribute to improving the accuracy of future cancer research. Furthermore, this research provides a foundation for identifying more effective treatment strategies. © The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

  14. Method for measuring radial impurity emission profiles using correlations of line integrated signals

    Science.gov (United States)

    Kuldkepp, M.; Brunsell, P. R.; Drake, J.; Menmuir, S.; Rachlew, E.

    2006-04-01

    A method of determining radial impurity emission profiles is outlined. The method uses correlations between line integrated signals and is based on the assumption of cylindrically symmetric fluctuations. Measurements at the reversed field pinch EXTRAP T2R show that emission from impurities expected to be close to the edge is clearly different in raw as well as analyzed data to impurities expected to be more central. Best fitting of experimental data to simulated correlation coefficients yields emission profiles that are remarkably close to emission profiles determined using more conventional techniques. The radial extension of the fluctuations is small enough for the method to be used and bandpass filtered signals indicate that fluctuations below 10kHz are cylindrically symmetric. The novel method is not sensitive to vessel window attenuation or wall reflections and can therefore complement the standard methods in the impurity emission reconstruction procedure.

  15. X-ray Spectroscopy of the Radiation-Driven Winds of Massive Stars: Line Profile and Line Ratio Diagnostics

    CERN Document Server

    Cohen, David H

    2009-01-01

    Massive stars drive powerful, supersonic winds via the radiative momentum associated with the thermal UV emission from their photospheres. Shock phenomena are ubiquitous in these winds, heating them to millions, and sometimes tens of millions, of degrees. The emission line spectra from the shock-heated plasma provide powerful diagnostics of the winds' physical conditions, which in turn provide constraints on models of wind shock heating. Here I show how x-ray line transfer is affected by photoelectric absorption in the partially ionized component of the wind and how it can be modeled to determine the astrophysically important mass-loss rates of these stellar winds. I also discuss how photoexcitation out of metastable excited levels of helium-like ions can provide critical information about the location of the hot plasma in magnetically channeled massive star winds.

  16. Modeling Bivariate Longitudinal Hormone Profiles by Hierarchical State Space Models.

    Science.gov (United States)

    Liu, Ziyue; Cappola, Anne R; Crofford, Leslie J; Guo, Wensheng

    2014-01-01

    The hypothalamic-pituitary-adrenal (HPA) axis is crucial in coping with stress and maintaining homeostasis. Hormones produced by the HPA axis exhibit both complex univariate longitudinal profiles and complex relationships among different hormones. Consequently, modeling these multivariate longitudinal hormone profiles is a challenging task. In this paper, we propose a bivariate hierarchical state space model, in which each hormone profile is modeled by a hierarchical state space model, with both population-average and subject-specific components. The bivariate model is constructed by concatenating the univariate models based on the hypothesized relationship. Because of the flexible framework of state space form, the resultant models not only can handle complex individual profiles, but also can incorporate complex relationships between two hormones, including both concurrent and feedback relationship. Estimation and inference are based on marginal likelihood and posterior means and variances. Computationally efficient Kalman filtering and smoothing algorithms are used for implementation. Application of the proposed method to a study of chronic fatigue syndrome and fibromyalgia reveals that the relationships between adrenocorticotropic hormone and cortisol in the patient group are weaker than in healthy controls.

  17. Large-Scale Profiling of Kinase Dependencies in Cancer Cell Lines

    Directory of Open Access Journals (Sweden)

    James Campbell

    2016-03-01

    Full Text Available One approach to identifying cancer-specific vulnerabilities and therapeutic targets is to profile genetic dependencies in cancer cell lines. Here, we describe data from a series of siRNA screens that identify the kinase genetic dependencies in 117 cancer cell lines from ten cancer types. By integrating the siRNA screen data with molecular profiling data, including exome sequencing data, we show how vulnerabilities/genetic dependencies that are associated with mutations in specific cancer driver genes can be identified. By integrating additional data sets into this analysis, including protein-protein interaction data, we also demonstrate that the genetic dependencies associated with many cancer driver genes form dense connections on functional interaction networks. We demonstrate the utility of this resource by using it to predict the drug sensitivity of genetically or histologically defined subsets of tumor cell lines, including an increased sensitivity of osteosarcoma cell lines to FGFR inhibitors and SMAD4 mutant tumor cells to mitotic inhibitors.

  18. Berry phases and profiles of line wings and rainbow satellites induced by optical collisions

    Science.gov (United States)

    Ciuryło, R.; Szudy, J.; Baylis, W. E.

    2015-09-01

    The concept of Berry phase is included in an analysis of the intensity distribution in far wings of pressure-broadened spectral lines emitted or absorbed by atoms placed in an external cone-rotating electric field. Particular attention is focused on frequency regions where rainbow satellite bands appear. A classical-path treatment that employs the time-dependent Schrödinger equation is used to derive an expression for the line shape, and it uses a dipole transition moment calculated with quasimolecular wave functions given by the Berry version of the adiabatic approximation. It is found that in the presence of an external rotating electric field, the intensity distribution in far wings can be expressed in terms of the universal line shape function of the unified Franck-Condon theory once energy shifts due to Stark and Berry effects are taken into account. We show that the influence of Berry phase in the profiles of the far wings can be manifested either in the form of deviations of observed profiles from the quasistatic distribution or the appearance of additional features in the vicinity of the maximum of the rainbow satellite band. As an example, the modification of the rainbow satellite at 162.3 nm in the red wing of the self-broadened Lyman-α line of hydrogen, caused by an external rotating electric field, is considered.

  19. Generation and gene expression profiling of 48 transcription-factor-inducible mouse embryonic stem cell lines

    Science.gov (United States)

    Yamamizu, Kohei; Sharov, Alexei A.; Piao, Yulan; Amano, Misa; Yu, Hong; Nishiyama, Akira; Dudekula, Dawood B.; Schlessinger, David; Ko, Minoru S. H.

    2016-01-01

    Mouse embryonic stem cells (ESCs) can differentiate into a wide range – and possibly all cell types in vitro, and thus provide an ideal platform to study systematically the action of transcription factors (TFs) in cell differentiation. Previously, we have generated and analyzed 137 TF-inducible mouse ESC lines. As an extension of this “NIA Mouse ESC Bank,” we generated and characterized 48 additional mouse ESC lines, in which single TFs in each line could be induced in a doxycycline-controllable manner. Together, with the previous ESC lines, the bank now comprises 185 TF-manipulable ESC lines (>10% of all mouse TFs). Global gene expression (transcriptome) profiling revealed that the induction of individual TFs in mouse ESCs for 48 hours shifts their transcriptomes toward specific differentiation fates (e.g., neural lineages by Myt1 Isl1, and St18; mesodermal lineages by Pitx1, Pitx2, Barhl2, and Lmx1a; white blood cells by Myb, Etv2, and Tbx6, and ovary by Pitx1, Pitx2, and Dmrtc2). These data also provide and lists of inferred target genes of each TF and possible functions of these TFs. The results demonstrate the utility of mouse ESC lines and their transcriptome data for understanding the mechanism of cell differentiation and the function of TFs. PMID:27150017

  20. Doppler ghosts in a hall of mirrors polarisation profiles of scattered emission lines

    CERN Document Server

    Henney, W J

    1994-01-01

    The Doppler shifts of optical emission lines which have been scattered by surrounding dust and electrons can provide useful information about the kinematics, geometry and physical conditions of astrophysical flows. In principle, the scatterers can provide views of the line-emitting gas from different directions, allowing the 3-d velocity field of the emitting gas to be determined and revealing sources which are hidden from direct view. Unfortunately, as in a Hall of Mirrors, the resultant multiple images can be confusing and hard to interpret. In general, the scattering geometry will be unknown, which makes it difficult to disentangle the effect of the motion of the scatterers from that of the motion of the emitting source. In this situation, spectropolarimetric observations can be a great help, since the scattered light will be partially polarised to a degree dependent on the angle of scattering and on the details of the scattering process. Analysis of the polarisation profiles of the scattered emission line...

  1. Reverberation Modeling of the Broad Emission Line Region in NGC 5548

    Science.gov (United States)

    Bottorff, M. C.; Korista, K. T.; Shlosman, I.; Blandford, R. D.

    Long-term observations of broad-line region (BLR) in the Seyfert~1 galaxy NGC~5548 are analyzed and a critical comparison with the predictions of a hydromagnetically-driven outflow model of Emmering, Blandford and Shlosman is provided. This model is used to generate a time series of C~IV line profiles that have responded to a time varying continuum. We include cloud emission anisotropy, cloud obscuration, a CLOUDY-generated emissivity function and a narrow-line component which is added to the BLR component to generate the total line profiles. The model is driven with continuum input based on the monitoring campaigns of NGC~5548 reported in Clavel et al. and Korista et al., and the line strengths, profiles and lags are compared with the observations. The model is able to reproduce the basic features of CIV line variability in this active galactic nucleus, i.e., time evolution of the profile shape and strength of the C~IV emission line without varying the model parameters. The best fit model provides the effective size, the dominant geometry, the emissivity distribution and the 3D velocity field of the C~IV BLR and constrains the mass of the central black hole to about $3\\times 10^7\\ M_{\\odot}$. The inner part of the wind in NGC~5548 appears to be responsible for the anisotropically emitted CIV line, while its outer part remains dusty and molecular, thus having similar spectral characteristics to a molecular torus, although its dynamics is fundamentally different. The model predicts a differential response across the C~IV line profile, producing a red-side-first response in the relative velocity interval of $3,000-6,000 {\\rm km\\ s^{-1}}$ followed by the blue mid-wing and finally by the line core. Given that no adequate method in computing the errors for data lags and centroids exists in the literature, the {\\it data} cross-correlation function provides results which appear inconclusive, making any direct comparison with the model premature. Overall analysis

  2. Solar Flare Termination Shock and Synthetic Emission Line Profiles of the Fe xxi 1354.08 Å Line

    Science.gov (United States)

    Guo, Lijia; Li, Gang; Reeves, Kathy; Raymond, John

    2017-09-01

    Solar flares are among the most energetic phenomena that occur in the solar system. In the standard solar flare model, a fast mode shock, often referred to as the flare termination shock (TS), can exist above the loop-top source of hard X-ray emissions. The existence of the TS has been recently related to spectral hardening of a flare’s hard X-ray spectra at energies >300 keV. Observations of the Fe xxi 1354.08 Å line during solar flares by the Interface Region Imaging Spectrograph (IRIS) spacecraft have found significant redshifts with >100 km s‑1, which is consistent with a reconnection downflow. The ability to detect such a redshift with IRIS suggests that one may be able to use IRIS observations to identify flare TSs. Using a magnetohydrodynamic simulation to model magnetic reconnection of a solar flare and assuming the existence of a TS in the downflow of the reconnection plasma, we model the synthetic emission of the Fe xxi 1354.08 line in this work. We show that the existence of the TS in the solar flare may manifest itself in the Fe xxi 1354.08 Å line.

  3. On line contribution functions and examining spectral line formation in 3D model stellar atmospheres

    CERN Document Server

    Amarsi, Anish Mayur

    2015-01-01

    Line contribution functions are useful diagnostics for studying spectral line formation in stellar atmospheres. I derive an expression for the contribution function to the abso- lute flux depression that emerges from three-dimensional box-in-a-star model stellar atmospheres. I illustrate the result by comparing the local thermodynamic equilibrium (LTE) spectral line formation of the high-excitation permitted OI777nm lines with the non-LTE case.

  4. On the use of the Fourier Transform to determine the projected rotational velocity of line-profile variable B stars

    CERN Document Server

    Aerts, C; Groot, P J; Degroote, P

    2014-01-01

    The Fourier Transform method is a popular tool to derive the rotational velocities of stars from their spectral line profiles. However, its domain of validity does not include line-profile variables with time-dependent profiles. We investigate the performance of the method for such cases, by interpreting the line-profile variations of spotted B stars, and of pulsating B tars, as if their spectral lines were caused by uniform surface rotation along with macroturbulence. We perform time-series analysis and harmonic least-squares fitting of various line diagnostics and of the outcome of several implementations of the Fourier Transform method. We find that the projected rotational velocities derived from the Fourier Transform vary appreciably during the pulsation cycle whenever the pulsational and rotational velocity fields are of similar magnitude. The macroturbulent velocities derived while ignoring the pulsations can vary with tens of km/s during the pulsation cycle. The temporal behaviour of the deduced rotat...

  5. 2D Ising Model with a Defect Line

    CERN Document Server

    Cabra, D C

    1994-01-01

    We study the two-dimensional Ising model with a defect line and evaluate multipoint energy correlation functions using non-perturbative field-theoretical methods. We also discuss the evaluation of the two spin correlator on the defect line.

  6. First evidence of non-Gaussian solar flare EUV spectral line profiles and accelerated non-thermal ion motion

    CERN Document Server

    Jeffrey, Natasha; Labrosse, Nicolas

    2016-01-01

    The properties of solar flare plasma can be determined from observations of optically thin EUV lines. The spectral line profiles emitted in a flaring MK plasma are expected to be dominated by Doppler broadening, producing Gaussian line profiles, if the underlying ion velocity distribution is Maxwellian. We look for non-Gaussian line profiles during a flare, that may indicate the presence of accelerated ion and/or plasma non-thermal velocity distributions. We study EUV spectral lines during a flare SOL2013-05-15T01:45 using the Hinode EUV Imaging Spectrometer (EIS). The flare is located close to the eastern solar limb. It has an extended loop structure, allowing different flare features: ribbons, hard X-ray (HXR) footpoints and the loop-top source to be clearly observed in EUV and X-rays. EUV line spectroscopy is performed in seven regions covering the flare features. We study the line profiles of isolated and unblended Fe XVI lines (262.9760 A) formed at temperatures of 2-4 MK. Suitable Fe XVI line profiles c...

  7. Flatness and Profile Integration Control Model for Tandem Cold Mills

    Institute of Scientific and Technical Information of China (English)

    2012-01-01

    Using the effective matrix methods of flatness and profile control synthetically, the flatness and profile in- tegration control scheme for tandem cold mills is built in order to increase flatness and profile control precision of tan- dem cold mills. Corresponding control strategies are adopted for various control objectives of different stands and the coordination control strategies of various stands are given, which makes the on-line flatness control cooperate with on-line profile control and implements the parallel control of different stands. According to the measured flatness and profile data of some 1550 mm tandem cold mills, the control scheme is verified and the result indicates that the scheme has high flatness and profile control precision with steady and reliable control process. A new way and method is supplied for researching shade control of tandem cold mills.

  8. Model comparison of the dark matter profiles of Fornax, Sculptor, Carina and Sextans

    NARCIS (Netherlands)

    Breddels, Maarten A.; Helmi, Amina

    2013-01-01

    Aims: We compare dark matter profile models of four dwarf spheroidal galaxies satellites of the Milky Way using Bayesian evidence. Methods: We use orbit based dynamical models to fit the 2nd and 4th moments of the line of sight velocity distributions of the Fornax, Sculptor, Carina and Sextans dwarf

  9. Simultaneous Ultraviolet and Optical Emission-line Profiles of Quasars: Implications for Black Hole Mass Determination

    CERN Document Server

    Ho, Luis C; Dong, Xiao-Bo; Greene, Jenny E; Ponti, Gabriele

    2012-01-01

    The X-shooter instrument on the VLT was used to obtain spectra of seven moderate-redshift quasars simultaneously covering the spectral range 3000 Ang to 2.5 microns. At z ~ 1.5, most of the prominent broad emission lines in the ultraviolet to optical region are captured in their rest frame. We use this unique dataset, which mitigates complications from source variability, to intercompare the line profiles of C IV 1549, C III] 1909, Mg II 2800, and Halpha and evaluate their implications for black hole mass estimation. We confirm that Mg II and the Balmer lines share similar kinematics and that they deliver mutually consistent black hole mass estimates with minimal internal scatter (< 0.1 dex) using the latest virial mass estimators. Although no virial mass formalism has yet been calibrated for C III], this line does not appear promising for such an application because of the large spread of its velocity width compared to lines of both higher and lower ionization; part of the discrepancy may be due to the di...

  10. A Network Model for Parallel Line Balancing Problem

    OpenAIRE

    Recep Benzer; Hadi Gökçen; Tahsin Çetinyokus; Hakan Çerçioglu

    2007-01-01

    Gökçen et al. (2006) have proposed several procedures and a mathematical model on single-model (product) assembly line balancing (ALB) problem with parallel lines. In parallel ALB problem, the goal is to balance more than one assembly line together. In this paper, a network model for parallel ALB problem has been proposed and illustrated on a numerical example. This model is a new approach for parallel ALB and it provides a different point of view for i...

  11. Ultraviolet and Optical Line Profile Variations in the Spectrum of {epsilon} Persei

    Energy Technology Data Exchange (ETDEWEB)

    Gies, D. R.; Kambe, E.; Josephs, T. S.; Bagnuolo, W. G. Jr.; Choi, Y. J.; Gudehus, D.; Guyton, K. M.; Hartkopf, W. I.; Hildebrand, J. L.; Kaye, A. B. (and others)

    1999-11-01

    The rapid variable star, {epsilon} Per (B0.5 IV-III), displays the largest amplitude profile fluctuations known among the growing number of massive, spectrum-variable stars. Here we present an analysis of a continuous 5 day run of IUE UV spectroscopy, and we show for the first time that the systematic, blue-to-red moving patterns observed in high-quality optical spectra are also present in the UV photospheric lines. We present cross-correlation functions of the individual spectra with that of a narrow-lined standard that produce a high signal-to-noise ratio representation of the blue-to-red moving bump patterns found in individual lines. We then use time series analysis methods to determine the periodic components of the profile variations (after reregistering the spectra to correct for binary motion). There are at least six periods present (ranging from 8.46 to 2.27 hr), and most of these signals are also found in optical line variations observed in 1986 (although the relative amplitudes have changed significantly). Furthermore, analysis of a shorter time series of IUE spectra from 1984 shows that similar periods were present then. We also present H{alpha} and He i {lambda}6678 profiles obtained with the Georgia State University Multi-Telescope Telescope, which were made simultaneously with IUE, and we show that the profile variations are essentially identical in the UV and optical ranges. We rule out rotational modulation and circumstellar gas obscuration as possible causes, and we suggest instead that the variations are the result of photospheric nonradial pulsations of relatively low degree (l=3-5). There were significant changes ({approx}10%) in the equivalent widths of the UV stellar wind lines during the IUE run, and we suggest that wind strengthening events are related to episodes of large-amplitude, constructive interference between the NRP modes. Thus, intermode beating may play an important role in promoting wind loss from massive stars. (c) (c) 1999

  12. Comprehensive expression profiling of tumor cell lines identifies molecular signatures of melanoma progression.

    Directory of Open Access Journals (Sweden)

    Byungwoo Ryu

    Full Text Available BACKGROUND: Gene expression profiling has revolutionized our ability to molecularly classify primary human tumors and significantly enhanced the development of novel tumor markers and therapies; however, progress in the diagnosis and treatment of melanoma over the past 3 decades has been limited, and there is currently no approved therapy that significantly extends lifespan in patients with advanced disease. Profiling studies of melanoma to date have been inconsistent due to the heterogeneous nature of this malignancy and the limited availability of informative tissue specimens from early stages of disease. METHODOLOGY/PRINCIPLE FINDINGS: In order to gain an improved understanding of the molecular basis of melanoma progression, we have compared gene expression profiles from a series of melanoma cell lines representing discrete stages of malignant progression that recapitulate critical characteristics of the primary lesions from which they were derived. Here we describe the unsupervised hierarchical clustering of profiling data from melanoma cell lines and melanocytes. This clustering identifies two distinctive molecular subclasses of melanoma segregating aggressive metastatic tumor cell lines from less-aggressive primary tumor cell lines. Further analysis of expression signatures associated with melanoma progression using functional annotations categorized these transcripts into three classes of genes: 1 Upregulation of activators of cell cycle progression, DNA replication and repair (CDCA2, NCAPH, NCAPG, NCAPG2, PBK, NUSAP1, BIRC5, ESCO2, HELLS, MELK, GINS1, GINS4, RAD54L, TYMS, and DHFR, 2 Loss of genes associated with cellular adhesion and melanocyte differentiation (CDH3, CDH1, c-KIT, PAX3, CITED1/MSG-1, TYR, MELANA, MC1R, and OCA2, 3 Upregulation of genes associated with resistance to apoptosis (BIRC5/survivin. While these broad classes of transcripts have previously been implicated in the progression of melanoma and other malignancies, the

  13. Properties of 3-dimensional line location models

    DEFF Research Database (Denmark)

    Brimberg, Jack; Juel, Henrik; Schöbel, Anita

    2002-01-01

    We consider the problem of locating a line with respect to some existing facilities in 3-dimensional space, such that the sum of weighted distances between the line and the facilities is minimized. Measuring distance using the l\\_p norm is discussed, along with the special cases of Euclidean...

  14. Properties of 3-dimensional line location models

    DEFF Research Database (Denmark)

    Brimberg, Jack; Juel, Henrik; Schöbel, Anita

    2002-01-01

    We consider the problem of locating a line with respect to some existing facilities in 3-dimensional space, such that the sum of weighted distances between the line and the facilities is minimized. Measuring distance using the l\\_p norm is discussed, along with the special cases of Euclidean...

  15. Modeling operational behavior of a disassembly line

    Science.gov (United States)

    Kizilkaya, Elif A.; Gupta, Surendra M.

    2004-12-01

    In this paper we present a dynamic kanban (pull) system specifically developed for disassembly lines. This type of kanban system is much more complex than the traditional kanban system used in assembly lines. For instance, unlike the assembly line where the external demand occurs only at the last station, the demands in the disassembly case also occur at any of the intermittent stations. The reason is that as a product moves on the disassembly line, various parts are disassembled at every station and accumulated at that station. Therefore, there are as many demand sources as there are number of parts. We consider a case example involving the end-of-life products. Based on the precedence relationships and other criteria such as hazardous properties of the parts, we balance the disassembly line. The results of the disassembly line-balancing problem (DLBP) are used as input to the proposed dynamic kanban system for disassembly line (DKSDL). We compare the performance of the DKSDL to the modified kanban system for disassembly line (MKSDL), which was previously introduced by the authors. We show, via simulation, that the DKSDL is far superior to MKSDL considered.

  16. Assessment of a systematic expression profiling approach in ENU-induced mouse mutant lines.

    Science.gov (United States)

    Seltmann, Matthias; Horsch, Marion; Drobyshev, Alexei; Chen, Yali; de Angelis, Martin Hrabé; Beckers, Johannes

    2005-01-01

    Comparative genomewide expression profiling is a powerful tool in the effort to annotate the mouse genome with biological function. The systematic analysis of RNA expression data of mouse lines from the Munich ENU mutagenesis screen might support the understanding of the molecular biology of such mutants and provide new insights into mammalian gene function. In a direct comparison of DNA microarray experiments of individual versus pooled RNA samples of organs from ENU-induced mouse mutants, we provide evidence that individual RNA samples may outperform pools in some aspects. Genes with high biological variability in their expression levels (noisy genes) are identified as false positives in pooled samples. Evidence suggests that highly stringent housing conditions and standardized procedures for the isolation of organs significantly reduce biological variability in gene expression profiling experiments. Data on wild-type individuals demonstrate the positive effect of controlling variables such as social status, food intake before organ sampling, and stress with regard to reproducibility of gene expression patterns. Analyses of several organs from various ENU-induced mutant lines in general show low numbers of differentially expressed genes. We demonstrate the feasibility to detect transcriptionally affected organs employing RNA expression profiling as a tool for molecular phenotyping.

  17. Line-profile variations in radial-velocity measurements: Two alternative indicators for planetary searches

    CERN Document Server

    Figueira, P; Pepe, F; Lovis, C; Nardetto, N

    2013-01-01

    Aims. We introduce two methods to identify false-positive planetary signals in the context of radial-velocity exoplanet searches. The first is the bi-Gaussian cross-correlation function fitting, and the second is the measurement of asymmetry in radial-velocity spectral line information content, Vasy. Methods. We make a systematic analysis of the most used common line profile diagnosis, Bisector Inverse Slope and Velocity Span, along with the two proposed ones. We evaluate all these diagnosis methods following a set of well-defined common criteria and using both simulated and real data. We apply them to simulated cross-correlation functions created with the program SOAP and which are affected by the presence of stellar spots, and to real cross-correlation functions, calculated from HARPS spectra, for stars with a signal originating both in activity and created by a planet. Results. We demonstrate that the bi-Gaussian method allows a more precise characterization of the deformation of line profiles than the sta...

  18. Hodgkin Lymphoma Cell Lines Are Characterized by a Specific miRNA Expression Profile

    Directory of Open Access Journals (Sweden)

    Johan H. Gibcus

    2009-02-01

    Full Text Available Hodgkin lymphoma (HL is derived from preapoptotic germinal center B cells, although a general loss of B cell phenotype is noted. Using quantitative reverse transcription-polymerase chain reaction and miRNA microarray, we determined the microRNA (miRNA profile of HL and compared this with the profile of a panel of B-cell non-Hodgkin lymphomas. The two methods showed a strong correlation for the detection of miRNA expression levels. The HL-specific miRNA included miR-17-92 cluster members, miR-16, miR-21, miR-24, and miR-155. Using a large panel of cell lines, we found differential expression between HL and other B-cell lymphoma-derived cell lines for 27 miRNA. A significant down-regulation in HL compared to non-Hodgkin lymphoma was observed only for miR-150. Next, we performed target gene validation of predicted target genes for miR-155, which is highly expressed in HL and is differentially expressed between HL and Burkitt lymphoma. Using luciferase reporter assays, we validated 11 predicted miR-155 target genes in three different HL cell lines. We demonstrated that AGTR1, FGF7, ZNF537, ZIC3, and IKBKE are true miR-155 target genes in HL.

  19. Hydrodynamic models of a Cepheid atmosphere. III - Line spectrum and radius determinations

    Science.gov (United States)

    Karp, A. H.

    1975-01-01

    Line profiles are computed on the basis of the moving atmospheres from the hydrodynamic models investigated by Karp (1975). It is found that the velocity gradients in the atmosphere can be used to explain the apparent, slightly supersonic microturbulence. The total observed microturbulence is seen to be consistent with the linear sum of the classical microturbulence and that caused by the velocity gradients.

  20. Utilization of Lymphoblastoid Cell Lines as a System for the Molecular Modeling of Autism

    Science.gov (United States)

    Baron, Colin A.; Liu, Stephenie Y.; Hicks, Chindo; Gregg, Jeffrey P.

    2006-01-01

    In order to provide an alternative approach for understanding the biology and genetics of autism, we performed statistical analysis of gene expression profiles of lymphoblastoid cell lines derived from children with autism and their families. The goal was to assess the feasibility of using this model in identifying autism-associated genes.…

  1. The morphologies of breast cancer cell lines in three-dimensional assays correlate with their profiles of gene expression

    DEFF Research Database (Denmark)

    Kenny, Paraic A; Lee, Genee Y; Myers, Connie A;

    2007-01-01

    large scale comparison of the transcriptional profiles and 3D cell culture phenotypes of a substantial panel of human breast cancer cell lines. Each cell line adopts a colony morphology of one of four main classes in 3D culture. These morphologies reflect, at least in part, the underlying gene...... expression profile and protein expression patterns of the cell lines, and distinct morphologies were also associated with tumor cell invasiveness and with cell lines originating from metastases. We further demonstrate that consistent differences in genes encoding signal transduction proteins emerge when even...

  2. Performance comparison of digital microRNA profiling technologies applied on human breast cancer cell lines.

    Directory of Open Access Journals (Sweden)

    Erik Knutsen

    Full Text Available MicroRNA profiling represents an important first-step in deducting individual RNA-based regulatory function in a cell, tissue, or at a specific developmental stage. Currently there are several different platforms to choose from in order to make the initial miRNA profiles. In this study we investigate recently developed digital microRNA high-throughput technologies. Four different platforms were compared including next generation SOLiD ligation sequencing and Illumina HiSeq sequencing, hybridization-based NanoString nCounter, and miRCURY locked nucleic acid RT-qPCR. For all four technologies, full microRNA profiles were generated from human cell lines that represent noninvasive and invasive tumorigenic breast cancer. This study reports the correlation between platforms, as well as a more extensive analysis of the accuracy and sensitivity of data generated when using different platforms and important consideration when verifying results by the use of additional technologies. We found all the platforms to be highly capable for microRNA analysis. Furthermore, the two NGS platforms and RT-qPCR all have equally high sensitivity, and the fold change accuracy is independent of individual miRNA concentration for NGS and RT-qPCR. Based on these findings we propose new guidelines and considerations when performing microRNA profiling.

  3. Gene expression profiles of human promyelocytic leukemia cell lines exposed to volatile organic compounds.

    Science.gov (United States)

    Sarma, Sailendra Nath; Kim, Youn-Jung; Ryu, Jae-Chun

    2010-05-27

    Benzene, toluene, o-xylene, ethylbenzene, trichloroethylene and dichloromethane are the most widely used volatile organic compounds (VOCs), and their toxic mechanisms are still undefined. This study analyzed the genome-wide expression profiles of human promyelocytic leukemia HL-60 cells exposed to VOCs using a 35-K whole human genome oligonucleotide microarray to ascertain potential biomarkers. Genes with a significantly increased expression levels (over 1.5-fold and p-values p53 signaling pathway, apoptosis, and natural killer cell-mediated cytotoxicity pathway. Functionally important immune response- and apoptosis-related genes were further validated by real-time RT-PCR. The results showed that IFIT1, IFIT2, IFIT3, USP18, INFGR2, PMAIP1, GADD45A, NFKBIA, TNFAIP3, and BIRC3 genes altered their expression profiles in a dose-dependent manner. Similar expressions profiles were also found in human erythromyeloblastoid leukemia K562 cells and in human leukemic monocyte lymphoma U937 cells. In conclusion, both gene expression profiles and gene ontology analysis have elucidated potential gene-based biomarkers and provided insights into the mechanism underlying the response of human leukemia cell lines to VOC exposure.

  4. Performance comparison of digital microRNA profiling technologies applied on human breast cancer cell lines.

    Science.gov (United States)

    Knutsen, Erik; Fiskaa, Tonje; Ursvik, Anita; Jørgensen, Tor Erik; Perander, Maria; Lund, Eiliv; Seternes, Ole Morten; Johansen, Steinar D; Andreassen, Morten

    2013-01-01

    MicroRNA profiling represents an important first-step in deducting individual RNA-based regulatory function in a cell, tissue, or at a specific developmental stage. Currently there are several different platforms to choose from in order to make the initial miRNA profiles. In this study we investigate recently developed digital microRNA high-throughput technologies. Four different platforms were compared including next generation SOLiD ligation sequencing and Illumina HiSeq sequencing, hybridization-based NanoString nCounter, and miRCURY locked nucleic acid RT-qPCR. For all four technologies, full microRNA profiles were generated from human cell lines that represent noninvasive and invasive tumorigenic breast cancer. This study reports the correlation between platforms, as well as a more extensive analysis of the accuracy and sensitivity of data generated when using different platforms and important consideration when verifying results by the use of additional technologies. We found all the platforms to be highly capable for microRNA analysis. Furthermore, the two NGS platforms and RT-qPCR all have equally high sensitivity, and the fold change accuracy is independent of individual miRNA concentration for NGS and RT-qPCR. Based on these findings we propose new guidelines and considerations when performing microRNA profiling.

  5. Gene expression profile of colon cancer cell lines treated with SN-38

    DEFF Research Database (Denmark)

    Wallin, A; Francis, P; Nilbert, M

    2010-01-01

    Colorectal cancer is the third most common form of cancer in the industrial countries. Due to advances regarding the treatments, primarily development of improved surgical methods and the ability to make the earlier diagnosis, the mortality has remained constant during the past decades even though...... the incidence in fact has increased. To improve chemotherapy and enable personalised treatment, the need of biomarkers is of great significance. In this study, we evaluated the gene expression profiles of the colon cancer cell lines treated with SN-38, the active metabolite of topoisomerase-1 inhibitor...

  6. Gene expression profile of colon cancer cell lines treated with SN-38

    DEFF Research Database (Denmark)

    Wallin, A; Francis, P; Nilbert, M;

    2010-01-01

    the incidence in fact has increased. To improve chemotherapy and enable personalised treatment, the need of biomarkers is of great significance. In this study, we evaluated the gene expression profiles of the colon cancer cell lines treated with SN-38, the active metabolite of topoisomerase-1 inhibitor......Colorectal cancer is the third most common form of cancer in the industrial countries. Due to advances regarding the treatments, primarily development of improved surgical methods and the ability to make the earlier diagnosis, the mortality has remained constant during the past decades even though...

  7. Sizes of flaring kernels in various parts of the Hα line profile

    Directory of Open Access Journals (Sweden)

    K. Radziszewski

    2008-10-01

    Full Text Available In this paper we present new results of spectra-photometrical investigations of the flaring kernels' sizes and their intensities measured simultaneously in various parts of the Hα line profile. Our investigations were based on the very high temporal resolution spectral-imaging observations of the solar flares collected with Large Coronagraph (LC, Multi-channel Subtractive Double Pass Spectrograph and Solar Eclipse Coronal Imaging System (MSDP-SECIS at Białkow Observatory (University of Wrocław, Poland.

    We have found that the areas of the investigated individual flaring kernels vary in time and in wavelengths, as well as the intensities and areas of the Hα flaring kernels decreased systematically when observed in consecutive wavelengths toward the wings of the Hα line. Our result could be explained as an effect of the cone-shaped lower parts of the magnetic loops channeling high energy particle beams exciting chromospheric plasma.

  8. K$\\alpha$ iron line profile from accretion disks around regular and singular exotic compact objects

    CERN Document Server

    Bambi, Cosimo

    2013-01-01

    The nature of the super-massive black hole candidates in galactic nuclei can be tested by analyzing the profile of the K$\\alpha$ iron line observed in their X-ray spectrum. In this paper, we consider the possibility that the spacetime in the immediate vicinity of these objects may be described by some non vacuum exact solutions of Einstein's equations resulting as the end-state of gravitational collapse. The vacuum far away portion of the spacetime is described by the Schwarzschild metric, while the interior part may be either regular or have a naked singularity at the center. The iron line generated around this class of objects has specific features, which can be used to distinguish such objects from Kerr black holes. In particular, their iron line cannot have the characteristic low-energy tail of the line generated from accretion disks around fast-rotating Kerr black holes. We can thus conclude that the super-massive black hole candidates whose spin parameter has been estimated to be close to 1 assuming the...

  9. Derivation and transcriptional profiling analysis of pluripotent stem cell lines from rat blastocysts

    Institute of Scientific and Technical Information of China (English)

    Chunliang Li; Ying Yang; Junjie Gu; Yu Ma; Ying Jin

    2009-01-01

    Embryonic stem (ES) cells are derived from blastocyst-stage embryos. Their unique properties of self-renewal and pluripotency make them an attractive tool for basic research and a potential cell resource for therapy. ES cells of mouse and human have been successfully generated and applied in a wide range of research. However, no genuine ES cell lines have been obtained from rat to date. In this study, we identified pluripotent cells in early rat embryos using specific antibodies against markers of pluripotent stem cells. Subsequently, by modifying the culture medium for rat blastocysts, we derived pluripotent rat ES-llke cell lines, which expressed pluripotency markers and formed embryoid bodies (EBs) in vitro. Importantly, these rat ES-like cells were able to produce teratomas. Both EBs and teratomas contained tissues from all three embryonic germ layers, in addition, from the rat ES-like cells, we derived a rat primitive endoderm (PrE) cell line. Furthermore, we conducted transcriptional profiling of the rat ES-like cells and identified the unique molecular signature of the rat pluripotent stem cells. Our analysis demonstrates that multiple signaling pathways, including the BMP, Activin and roTOR pathways, may be involved in keeping the rat ES-like cells in an undifferentiated state. The cell lines and information obtained in this study will accelerate our understanding of the molecular regulation underlying pluripotency and guide us in the appropriate manipulation of ES cells from a particular species.

  10. A Tie2-driven BAC-TRAP transgenic line for in vivo endothelial gene profiling.

    Science.gov (United States)

    Santhosh, Devi; Huang, Zhen

    2016-03-01

    Recent technological innovations including bacterial artificial chromosome-based translating ribosome affinity purification (BAC-TRAP) have greatly facilitated analysis of cell type-specific gene expression in vivo, especially in the nervous system. To better study endothelial gene expression in vivo, we have generated a BAC-TRAP transgenic mouse line where the L10a ribosomal subunit is tagged with EGFP and placed under the control of the endothelium-specific Tie2 (Tek) promoter. We show that transgene expression in this line is widely, but specifically, detected in endothelial cells in several brain regions throughout pre- and postnatal development, as well as in other organs. We also show that this line results in highly significant enrichment of endothelium-specific mRNAs from brain tissues at different stages. This BAC-TRAP line therefore provides a useful genetic tool for in vivo endothelial gene profiling under various developmental, physiological, and pathological conditions. genesis 54:136-145, 2016. © 2016 Wiley Periodicals, Inc.

  11. THE GENE EXPRESSION PROFILE OF HIGHLY METASTATIC HUMAN OVARIAN CANCER CELL LINE BY GENE CHIP

    Institute of Scientific and Technical Information of China (English)

    吕桂泉; 许沈华; 牟瀚舟; 朱赤红; 羊正炎; 高永良; 楼洪坤; 刘祥麟; 杨文; 程勇

    2001-01-01

    To study the gene expression of high metastatic human ovarian carcinoma cell line (HO-8910PM) and to screen for novel metastasis- associated genes by cDNA microarray. Methods: The cDNA was retro-transcribed from equal quantity mRNA derived from tissues of highly metastatic ovarian carcinoma cell line and normal ovarian, and was labeled with Cy5 and Cy3 fluorescence as probes. The mixed probes were hybridized with BioDoor 4096 double dot human whole gene chip. The chip was scanned by scanArray 3000 laser scanner. The acquired image was analyzed by ImaGene 3.0 software. Results: By applying the cDNA microarray we found: A total of 323 genes whose expression level were 3 times higher or lower in HO-8910PM cell than normal ovarian epithelium cell were screened out, with 71 higher and 252 lower respectively. Among these 10 were new genes. 67 genes showed expression difference bigger than 6 times between HO-8910PM cell and normal ovarian epithelium cell, among these genes 12 were higher, 55 lower, and two new genes were found. Conclusion: cDNA microarray technique is effective in screening the differentially expressed genes between human ovarian cancer cell line (HO-8910PM) and normal ovarian epithelium cell. Using the cDNA microarray to analyze of human ovarian cancer cell line gene expression profile difference will help the gene diagnosis, treatment and protection.

  12. Mars Ozone Absorption Line Shapes from Infrared Heterodyne Spectra Applied to GCM-Predicted Ozone Profiles and to MEX/SPICAM Column Retrievals

    Science.gov (United States)

    Fast, Kelly E.; Kostiuk, T.; Annen, J.; Hewagama, T.; Delgado, J.; Livengood, T. A.; Lefevre, F.

    2008-01-01

    We present the application of infrared heterodyne line shapes of ozone on Mars to those produced by radiative transfer modeling of ozone profiles predicted by general circulation models (GCM), and to contemporaneous column abundances measured by Mars Express SPICAM. Ozone is an important tracer of photochemistry Mars' atmosphere, serving as an observable with which to test predictions of photochemistry-coupled GCMs. Infrared heterodyne spectroscopy at 9.5 microns with spectral resolving power >1,000,000 is the only technique that can directly measure fully-resolved line shapes of Martian ozone features from the surface of the Earth. Measurements were made with Goddard Space Flight Center's Heterodyne instrument for Planetary Wind And Composition (HIPWAC) at the NASA Infrared Telescope Facility (IRTF) on Mauna Kea, Hawaii on February 21-24 2008 UT at Ls=35deg on or near the MEX orbital path. The HIPWAC observations were used to test GCM predictions. For example, a GCM-generated ozone profile for 60degN 112degW was scaled so that a radiative transfer calculation of its absorption line shape matched an observed HIPWAC absorption feature at the same areographic position, local time, and season. The RMS deviation of the model from the data was slightly smaller for the GCM-generated profile than for a line shape produced by a constant-with-height profile, even though the total column abundances were the same, showing potential for testing and constraining GCM ozone-profiles. The resulting ozone column abundance from matching the model to the HIPWAC line shape was 60% higher than that observed by SPICAM at the same areographic position one day earlier and 2.5 hours earlier in local time. This could be due to day-to-day, diurnal, or north polar region variability, or to measurement sensitivity to the ozone column and its distribution, and these possibilities will be explored. This work was supported by NASA's Planetary Astronomy Program.

  13. Mars Ozone Absorption Line Shapes from Infrared Heterodyne Spectra Applied to GCM-Predicted Ozone Profiles and to MEX/SPICAM Column Retrievals

    Science.gov (United States)

    Fast, Kelly E.; Kostiuk, T.; Annen, J.; Hewagama, T.; Delgado, J.; Livengood, T. A.; Lefevre, F.

    2008-01-01

    We present the application of infrared heterodyne line shapes of ozone on Mars to those produced by radiative transfer modeling of ozone profiles predicted by general circulation models (GCM), and to contemporaneous column abundances measured by Mars Express SPICAM. Ozone is an important tracer of photochemistry Mars' atmosphere, serving as an observable with which to test predictions of photochemistry-coupled GCMs. Infrared heterodyne spectroscopy at 9.5 microns with spectral resolving power >1,000,000 is the only technique that can directly measure fully-resolved line shapes of Martian ozone features from the surface of the Earth. Measurements were made with Goddard Space Flight Center's Heterodyne instrument for Planetary Wind And Composition (HIPWAC) at the NASA Infrared Telescope Facility (IRTF) on Mauna Kea, Hawaii on February 21-24 2008 UT at Ls=35deg on or near the MEX orbital path. The HIPWAC observations were used to test GCM predictions. For example, a GCM-generated ozone profile for 60degN 112degW was scaled so that a radiative transfer calculation of its absorption line shape matched an observed HIPWAC absorption feature at the same areographic position, local time, and season. The RMS deviation of the model from the data was slightly smaller for the GCM-generated profile than for a line shape produced by a constant-with-height profile, even though the total column abundances were the same, showing potential for testing and constraining GCM ozone-profiles. The resulting ozone column abundance from matching the model to the HIPWAC line shape was 60% higher than that observed by SPICAM at the same areographic position one day earlier and 2.5 hours earlier in local time. This could be due to day-to-day, diurnal, or north polar region variability, or to measurement sensitivity to the ozone column and its distribution, and these possibilities will be explored. This work was supported by NASA's Planetary Astronomy Program.

  14. Demonstration of Current Profile Shaping using Double Dog-Leg Emittance Exchange Beam Line at Argonne Wakefield Accelerator

    Energy Technology Data Exchange (ETDEWEB)

    Ha, Gwanghui [Argonne, HEP; Cho, Moo-Hyun [POSTECH; Conde, Manoel [Argonne, HEP; Doran, Darrell [Argonne, HEP; Gai, Wei [Argonne, HEP; Jing, Chunguang [Euclid Techlabs, Solon; Kim, Kwang-Je [Argonne, HEP; Liu, Wanming [Argonne, HEP; Namkung, Won [POSTECH; Piot, Philippe [Northern Illinois U.; Power, John [Argonne, HEP; Sun, Yin-E [Argonne, HEP; Whiteford, Charles [Argonne, HEP; Wisniewski, Eric [Argonne, HEP; Zholents, Alexander [Argonne, HEP

    2016-06-01

    Emittance exchange (EEX) based longitudinal current profile shaping is the one of the promising current profile shaping technique. This method can generate high quality arbitrary current profiles under the ideal conditions. The double dog-leg EEX beam line was recently installed at the Argonne Wakefield Accelerator (AWA) to explore the shaping capability and confirm the quality of this method. To demonstrate the arbitrary current profile generation, several different transverse masks are applied to generate different final current profiles. The phase space slopes and the charge of incoming beam are varied to observe and suppress the aberrations on the ideal profile. We present current profile shaping results, aberrations on the shaped profile, and its suppression.

  15. The galactic unclassified B[e] star HD 50138 III. The short-term line profile variability of its photospheric lines

    CERN Document Server

    Fernandes, Marcelo Borges; Nickeler, Dieter H; De Cat, Peter; Lampens, Patricia; Pereira, Claudio Bastos; Oksala, Mary E

    2012-01-01

    HD 50138 presents the B[e] phenomenon, but its nature is not clear yet. This star is known to present spectral variations, which have been associated with outbursts and shell phases. We analyze the line profile variability of HD 50138 and its possible origin, which provide possible hints to its evolutionary stage, so far said to be close to the end of (or slightly beyond) the main sequence. New high-resolution spectra of HD 50138 obtained with the HERMES spectrograph over several nights (five of them consecutively) were analyzed, allowing us to confirm short-term line profile variability. Our new data show short-term variations in the photospheric lines. On the other hand, purely circumstellar lines (such as [O I] lines) do not show such rapid variability. The rotational velocity of HD 50138, V_rot = 90.3 +- 4.3 km/s, and the rotation period, P = 3.64 +- 1.16 d, were derived from the He II 4026A photospheric line. Based on the moment method, we confirm that the origin of this short-term line profile variabili...

  16. Numerical Evaluation of Parameter Correlation in the Hartmann-Tran Line Profile

    Science.gov (United States)

    Adkins, Erin M.; Reed, Zachary; Hodges, Joseph T.

    2017-06-01

    The partially correlated quadratic, speed-dependent hard-collision profile (pCqSDHCP), for simplicity referred to as the Hartmann-Tran profile (HTP), has been recommended as a generalized lineshape for high resolution spectroscopy. The HTP parameterizes complex collisional effects such as Dicke narrowing, speed dependent narrowing, and correlations between velocity-changing and dephasing collisions, while also simplifying to simpler profiles that are widely used, such as the Voigt profile. As advanced lineshape profiles are adopted by more researchers, it is important to understand the limitations that data quality has on the ability to retrieve physically meaningful parameters using sophisticated lineshapes that are fit to spectra of finite signal-to-noise ratio. In this work, spectra were simulated using the HITRAN Application Programming Interface (HAPI) across a full range of line parameters. Simulated spectra were evaluated to quantify the precision with which fitted lineshape parameters can be determined at a given signal-to-noise ratio, focusing on the numerical correlation between the retrieved Dicke narrowing frequency and the velocity-changing and dephasing collisions correlation parameter. Tran, H., N. Ngo, and J.-M. Hartmann, Journal of Quantitative Spectroscopy and Radiative Transfer 2013. 129: p. 89-100. Tennyson, et al., Pure Appl. Chem. 2014, 86: p. 1931-1943. Kochanov, R.V., et al., Journal of Quantitative Spectroscopy and Radiative Transfer 2016. 177: p. 15-30. Tran, H., N. Ngo, and J.-M. Hartmann, Journal of Quantitative Spectroscopy and Radiative Transfer 2013. 129: p. 199-203.

  17. The Four Intersection-and-Difference Model for Line-Line Topological Relations

    Institute of Scientific and Technical Information of China (English)

    DENG Min; LI Zhilin; LI Guangqiang; ZHANG Xuesong

    2007-01-01

    The description of line-line topological relations is still an unsolved issue although much effort has been done. The problem is involved in many practical applications such as spatial query, spatial analysis and cartographic generalization. To develop a sound and effective approach to describe line-line relations, it is first necessary to define the topology of an individual line, i.e., local topology. The concept of connective degree is used for the identification of topological differences in the geometric structure of a line. The general topological definition of a line is given, i.e., endpoints set and interior point set. This definition can be applied to the embedded spaces of different dimensions, whether co-dimension is equal to or larger than zero. On this basis, a generic model called the 4 intersection-and-difference is set up for the description of basic line-line topological relations, upon which a conceptual neighborhood graph is built with consideration of topological distance. It is concluded that the proposed model can represent the property of topological changes, and basic relations between line segments in IR1 and IR2.

  18. Cell Line Derived 5-FU and Irinotecan Drug-Sensitivity Profiles Evaluated in Adjuvant Colon Cancer Trial Data

    DEFF Research Database (Denmark)

    Buhl, Ida Kappel; Gerster, Sarah; Delorenzi, Mauro

    2016-01-01

    patients who benefitted from the addition of irinotecan to 5-FU, we used gene expression profiles based on cell lines and clinical tumor material. These profiles were applied to expression data obtained from pretreatment formalin fixed paraffin embedded (FFPE) tumor tissue from 636 stage III colon cancer...

  19. Modification of SOL profiles and fluctuations with line-average density and divertor flux expansion in TCV

    DEFF Research Database (Denmark)

    Vianello, N.; Tsui, C.; Theiler, C.

    2017-01-01

    that this modification does not influence neither the detachment density threshold, nor the development of a flat SOL density profile which instead depends strongly on the increase of the core line average density. The modification of the SOL upstream profile, with the appearance of what is generally called a density...

  20. Prescribed wind shear modelling with the actuator line technique

    DEFF Research Database (Denmark)

    Mikkelsen, Robert Flemming; Sørensen, Jens Nørkær; Troldborg, Niels

    2007-01-01

    A method for prescribing arbitrary steady atmospheric wind shear profiles combined with CFD is presented. The method is furthermore combined with the actuator line technique governing the aerodynamic loads on a wind turbine. Computation are carried out on a wind turbine exposed to a representative...

  1. The 3D scanner prototype utilize object profile imaging using line laser and octave software

    Science.gov (United States)

    Nurdini, Mugi; Manunggal, Trikarsa Tirtadwipa; Samsi, Agus

    2016-11-01

    Three-dimensional scanner or 3D Scanner is a device to reconstruct the real object into digital form on a computer. 3D Scanner is a technology that is being developed, especially in developed countries, where the current 3D Scanner devices is the advanced version with a very expensive prices. This study is basically a simple prototype of 3D Scanner with a very low investment costs. 3D Scanner prototype device consists of a webcam, a rotating desk system controlled by a stepper motor and Arduino UNO, and a line laser. Objects that limit the research is the object with same radius from its center point (object pivot). Scanning is performed by using object profile imaging by line laser which is then captured by the camera and processed by a computer (image processing) using Octave software. On each image acquisition, the scanned object on a rotating desk rotated by a certain degree, so for one full turn multiple images of a number of existing side are finally obtained. Then, the profile of the entire images is extracted in order to obtain digital object dimension. Digital dimension is calibrated by length standard, called gage block. Overall dimensions are then digitally reconstructed into a three-dimensional object. Validation of the scanned object reconstruction of the original object dimensions expressed as a percentage error. Based on the results of data validation, horizontal dimension error is about 5% to 23% and vertical dimension error is about +/- 3%.

  2. Wind adaptive modeling of transmission lines using minimum description length

    Science.gov (United States)

    Jaw, Yoonseok; Sohn, Gunho

    2017-03-01

    The transmission lines are moving objects, which positions are dynamically affected by wind-induced conductor motion while they are acquired by airborne laser scanners. This wind effect results in a noisy distribution of laser points, which often hinders accurate representation of transmission lines and thus, leads to various types of modeling errors. This paper presents a new method for complete 3D transmission line model reconstruction in the framework of inner and across span analysis. The highlighted fact is that the proposed method is capable of indirectly estimating noise scales, which corrupts the quality of laser observations affected by different wind speeds through a linear regression analysis. In the inner span analysis, individual transmission line models of each span are evaluated based on the Minimum Description Length theory and erroneous transmission line segments are subsequently replaced by precise transmission line models with wind-adaptive noise scale estimated. In the subsequent step of across span analysis, detecting the precise start and end positions of the transmission line models, known as the Point of Attachment, is the key issue for correcting partial modeling errors, as well as refining transmission line models. Finally, the geometric and topological completion of transmission line models are achieved over the entire network. A performance evaluation was conducted over 138.5 km long corridor data. In a modest wind condition, the results demonstrates that the proposed method can improve the accuracy of non-wind-adaptive initial models on an average of 48% success rate to produce complete transmission line models in the range between 85% and 99.5% with the positional accuracy of 9.55 cm transmission line models and 28 cm Point of Attachment in the root-mean-square error.

  3. Solution profiles for some simple combustion models

    Energy Technology Data Exchange (ETDEWEB)

    Bebernes, J.; Eberly, D.; Fulks, W.

    1986-01-01

    In this paper, the shape (solution profile) of the solutions of the Gelfand problem and the perturbed Gelfand problem are studied. Both of these models play a fundamental role in the mathematical theory of thermal explosions for finite rigid and gaseous systems. For rigid systems the physical processes are determined by a pointwise balance between chemical heat addition and heat loss by conduction. During the inductive period, with a duration measured by the conduction time scale of the bounding container, the heat released by the chemical reaction is redistributed by thermal conduction. As the temperature of the container increases, the reaction rate grows dramatically. Eventually, the characteristic time for heat release becomes significantly smaller than the conduction time in a well-defined hot spot embedded in the system. Then the heat released is used almost entirely to increase the hot-spot temperature. The purpose of this paper is to show that both models detect this hot-spot development in a very precise manner. This hot-spot development had previously been detected only numerically.

  4. HMMEditor: a visual editing tool for profile hidden Markov model

    Directory of Open Access Journals (Sweden)

    Cheng Jianlin

    2008-03-01

    Full Text Available Abstract Background Profile Hidden Markov Model (HMM is a powerful statistical model to represent a family of DNA, RNA, and protein sequences. Profile HMM has been widely used in bioinformatics research such as sequence alignment, gene structure prediction, motif identification, protein structure prediction, and biological database search. However, few comprehensive, visual editing tools for profile HMM are publicly available. Results We develop a visual editor for profile Hidden Markov Models (HMMEditor. HMMEditor can visualize the profile HMM architecture, transition probabilities, and emission probabilities. Moreover, it provides functions to edit and save HMM and parameters. Furthermore, HMMEditor allows users to align a sequence against the profile HMM and to visualize the corresponding Viterbi path. Conclusion HMMEditor provides a set of unique functions to visualize and edit a profile HMM. It is a useful tool for biological sequence analysis and modeling. Both HMMEditor software and web service are freely available.

  5. Goal Model Integration for Tailoring Product Line Development Processes

    Directory of Open Access Journals (Sweden)

    Arfan Mansoor

    2016-07-01

    Full Text Available Many companies rely on the promised benefits of product lines, targeting systems between fully custom made software and mass products. Such customized mass products account for a large number of applications automatically derived from a product line. This results in the special importance of product lines for companies with a large part of their product portfolio based on their product line. The success of product line development efforts is highly dependent on tailoring the development process. This paper presents an integrative model of influence factors to tailor product line development processes according to different project needs, organizational goals, individual goals of the developers or constraints of the environment. This model integrates goal models, SPEM models and requirements to tailor development processes.

  6. Modeling of Top Scroll Profile Using Equidistant-Curve Approach for a Scroll Compressor

    Directory of Open Access Journals (Sweden)

    Tao Liu

    2015-01-01

    Full Text Available Scroll profile plays a key role in determining the performance of a scroll compressor. In this study geometric and dynamic characteristics of the scroll profile are analyzed to investigate the influence of its geometric continuity on property of a scroll compressor. Firstly, scroll profiles are created to redesign the geometry of scroll wrap by using the equidistant-curve approach on the basis of a generation line consisting of involute of circle and circular arc. Subsequently, the geometric and dynamic models of the scroll compressor are established. These models are related to parameters of the generation line of scroll profile and rotation angle of a moving scroll. Lastly, some simulation examples of second-order continuity (SOC scroll profile are compared with first-order continuity (FOC scroll profiles and some important conclusions are obtained. Results show that SOC scroll profile is superior to FOC profile in terms of volume ratio, stability of gas force, and possible leakage loss in a scroll compressor.

  7. Tornado risk model for transmission line design

    CSIR Research Space (South Africa)

    Milford, RV

    1997-11-01

    Full Text Available is in combination with ice loading. The wind load used in most codes of practice and design recommendations for transmission line design have until recently been based almost exclusively on large-scale wind storms, which may include severe storms such as hurricanes...

  8. Asymmetric profiles and prewetting lines in the filling of planar slits with Ne.

    Science.gov (United States)

    Sartarelli, Salvador A; Szybisz, Leszek

    2013-05-23

    The filling of slits with identical planar walls is investigated in the frame of the density functional theory. For this kind of slit, the confining potential is symmetric with respect to its central plane. Closed and open systems are studied by applying, respectively, the canonical and grand canonical ensembles (CE and GCE). Results obtained for the confinement of fluid Ne by alkaline surfaces are reported. The behavior of these systems is analyzed by varying the strength of the Ne-substrate attraction, the temperature T, and the coverage Γ(l). It is assumed that the one-body density of the fluid, ρ(r), is uniform along the (x, y) planes parallel to the walls, becoming a function of the coordinate z perpendicular to those planes. Two sorts of solutions are found for the density profile: (i) symmetric ones that follow the left-right symmetry of the potential exerted by the walls and (ii) asymmetric ones that break the symmetry of the slit. The pores are wide enough for determining prewetting (PW) lines and wetting and critical PW temperatures, i.e., T(w) and T(cpw), from the analysis of symmetric solutions provided by both the CE and GCE schemes. Asymmetric species are examined in detail for T > T(w). It is shown that for a given Ne-substrate pair at a fixed T both the CE and GCE frames yield only one asymmetric 2-fold degenerate stable profile (formed by a "thin" wetting film at one wall and a "thick" wetting film at the other) coexisting with two symmetric profiles (formed by "thin" or "thick" wetting films at the two walls), while the remaining asymmetric states are at best metastable. This feature occurs along PW lines and disappears at T(cpw).

  9. Empirical profile mixture models for phylogenetic reconstruction

    National Research Council Canada - National Science Library

    Si Quang, Le; Gascuel, Olivier; Lartillot, Nicolas

    2008-01-01

    Motivation: Previous studies have shown that accounting for site-specific amino acid replacement patterns using mixtures of stationary probability profiles offers a promising approach for improving...

  10. Autoantibody profiling of patients with primary biliary cirrhosis using a multiplexed line-blot assay.

    Science.gov (United States)

    Villalta, Danilo; Sorrentino, Maria Concetta; Girolami, Elia; Tampoia, Marilina; Alessio, Maria Grazia; Brusca, Ignazio; Daves, Massimo; Porcelli, Brunetta; Barberio, Giuseppina; Bizzaro, Nicola

    2015-01-01

    To evaluate the autoantibody profile in patients with primary biliary cirrhosis (PBC) using a new multiplexed line-blot assay specifically designed for the diagnosis of autoimmune liver diseases. Sera of 58 consecutive PBC patients and 191 disease controls (144 with autoimmune liver diseases other than PBC, and 67 with non-autoimmune chronic liver diseases) were tested by both the multiplexed line-blot Autoimmune Liver Disease Profile 2 (ALD2) and by IIF on HEp-2 cells and on rat kidney/liver/stomach tissues. ALD2 contains the following PBC-associated antigens: AMA-M2, natively purified from bovine heart; M2-E3, a recombinant fusion protein including the E2 subunits of PDC, BCOADC and OGDC; sp100, PML and gp210 recombinant proteins. With the ALD2 assay, a positive reaction to AMA-M2, M2-E3, sp100, PML and gp210 in PBC patients was observed in 77.6%, 84.5%, 34.5%, 15.1% and 18.9%, respectively, of the PBC sera. The overall sensitivity and specificity for PBC were 98.3% and 93.7%. Using IIF, positivity rates to AMA, and to antinuclear autoantibodies with membranous/rim-like and multiple nuclear dot patterns were 86.2%, 8.6% and 22.4%, respectively. The overall sensitivity and specificity for PBC of the IIF method were 86.2% and 97.9%, respectively. The ALD2 line-blot showed a good diagnostic accuracy for PBC and a higher sensitivity than the IIF method to detect sp100 and gp210 autoantibodies. Copyright © 2014 Elsevier B.V. All rights reserved.

  11. Crossing the Phantom divide line in the Chaplygin gas model

    CERN Document Server

    Sadjadi, H Mohseni

    2009-01-01

    The role of the interaction in crossing the phantom divide line in the Chaplygin gas model is discussed. We obtain some general properties of the interactions that allow the model to arrive at the phantom divide line. We show that these properties put some conditions on the ratio of dark matter to dark energy density.

  12. Analysis on Energy Conversion of Screw Centrifugal Pump in Impeller Domain Based on Profile Lines

    Directory of Open Access Journals (Sweden)

    Hui Quan

    2013-01-01

    Full Text Available In order to study the power capability of impeller and energy conversion mechanism of screw centrifugal pump, the methods of theoretical analysis and numerical simulation by computational fluid dynamics theory (CFD were adopted, specifically discussing the conditions of internal flow such as velocity, pressure, and concentration. When the medium is sand-water two-phase flow and dividing the rim of the lines and wheel lines of screw centrifugal pump to segments to analyze energy conversion capabilities which along the impeller profile lines with the dynamic head and hydrostatic head changer, the results show that the energy of fluid of the screw centrifugal pump is provided by helical segment, and the helical segment of the front of the impeller has played the role of multilevel increasing energy; the sand-water two phases move at different speeds because the different force field and the impeller propeller and centrifugal effect. As liquid phase is the primary phase, the energy conversion is mainly up to the change of liquid energy, the solid phase flows under the wrapped action of liquid, and solid energy is carried out through liquid indirectly.

  13. Distorted cyclotron line profile in Cep X-4 as observed by NuSTAR

    CERN Document Server

    Fuerst, F; Miyasaka, H; Bhalerao, V; Bachetti, M; Boggs, S E; Christensen, F E; Craig, W W; Grinberg, V; Hailey, C J; Harrison, F A; Kennea, J A; Rahoui, F; Stern, D; Tendulkar, S P; Tomsick, J A; Walton, D J; Wilms, J; Zhang, W W

    2015-01-01

    We present spectral analysis of NuSTAR and Swift observations of Cep X-4 during its outburst in 2014. We observed the source once during the peak of the outburst and once during the decay, finding good agreement in the spectral shape between the observations. We describe the continuum using a powerlaw with a Fermi-Dirac cutoff at high energies. Cep X-4 has a very strong cyclotron resonant scattering feature (CRSF) around 30 keV. A simple absorption-like line with a Gaussian optical depth or a pseudo-Lorentzian profile both fail to describe the shape of the CRSF accurately, leaving significant deviations at the red side of the line. We characterize this asymmetry with a second absorption feature around 19 keV. The line energy of the CRSF, which is not influenced by the addition of this feature, shows a small but significant positive luminosity dependence. With luminosities between (1-6)e36 erg/s, Cep X-4 is below the theoretical limit where such a correlation is expected. This behavior is similar to Vela X-1 a...

  14. DISTORTED CYCLOTRON LINE PROFILE IN CEP X-4 AS OBSERVED BY NuSTAR

    Energy Technology Data Exchange (ETDEWEB)

    Fürst, F.; Miyasaka, H.; Harrison, F. A.; Tendulkar, S. P.; Walton, D. J. [Cahill Center for Astronomy and Astrophysics, California Institute of Technology, Pasadena, CA 91125 (United States); Pottschmidt, K. [CRESST, Department of Physics, and Center for Space Science and Technology, UMBC, Baltimore, MD 21250 (United States); Bhalerao, V. [Inter-University Center for Astronomy and Astrophysics, Ganeshkhind, Pune 411007 (India); Bachetti, M. [Osservatorio Astronomico di Cagliari, I-09047 Selargius (Italy); Boggs, S. E.; Craig, W. W.; Tomsick, J. A. [Space Sciences Laboratory, University of California, Berkeley, CA 94720 (United States); Christensen, F. E. [DTU Space, National Space Institute, Technical University of Denmark, DK-2800 Lyngby (Denmark); Grinberg, V. [Massachusetts Institute of Technology, Kavli Institute for Astrophysics, Cambridge, MA 02139 (United States); Hailey, C. J. [Columbia Astrophysics Laboratory, Columbia University, New York, NY 10027 (United States); Kennea, J. A. [Department of Astronomy and Astrophysics, The Pennsylvania State University, University Park, PA 16802 (United States); Rahoui, F. [European Southern Observatory, D-85748 Garching bei München (Germany); Stern, D. [Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA 91109 (United States); Wilms, J. [Dr. Karl-Remeis-Sternwarte and ECAP, University of Erlangen-Nuremberg, D-96049 Bamberg (Germany); Zhang, W. W. [NASA Goddard Space Flight Center, Greenbelt, MD 20771 (United States)

    2015-06-20

    We present spectral analysis of Nuclear Spectroscopic Telescope Array and Swift observations of Cep X-4 during its outburst in 2014. We observed the source once during the peak of the outburst and once during the decay, finding good agreement in the spectral shape between the observations. We describe the continuum using a power law with a Fermi–Dirac cutoff at high energies. Cep X-4 has a very strong cyclotron resonant scattering feature (CRSF) around 30 keV. A simple absorption-like line with a Gaussian optical depth or a pseudo-Lorentzian profile both fail to describe the shape of the CRSF accurately, leaving significant deviations at the red side of the line. We characterize this asymmetry with a second absorption feature around 19 keV. The line energy of the CRSF, which is not influenced by the addition of this feature, shows a small but significant positive luminosity dependence. With luminosities between (1–6) × 10{sup 36} erg s{sup −1}, Cep X-4 is below the theoretical limit where such a correlation is expected. This behavior is similar to Vela X-1 and we discuss parallels between the two systems.

  15. Observations and Simulations of the Na i D1 Line Profiles in an M-class Solar Flare

    Science.gov (United States)

    Kuridze, D.; Mathioudakis, M.; Christian, D. J.; Kowalski, A. F.; Jess, D. B.; Grant, S. D. T.; Kawate, T.; Simões, P. J. A.; Allred, J. C.; Keenan, F. P.

    2016-12-01

    We study the temporal evolution of the Na i D1 line profiles in the M3.9 flare SOL2014-06-11T21:03 UT, using observations at high spectral resolution obtained with the Interferometric Bidimensional Spectrometer instrument on the Dunn Solar Telescope combined with radiative hydrodynamic simulations. Our results show a significant increase in the intensities of the line core and wings during the flare. The analysis of the line profiles from the flare ribbons reveals that the Na i D1 line has a central reversal with excess emission in the blue wing (blue asymmetry). We combine RADYN and RH simulations to synthesize Na i D1 line profiles of the flaring atmosphere and find good agreement with the observations. Heating with a beam of electrons modifies the radiation field in the flaring atmosphere and excites electrons from the ground state 3s 2S to the first excited state 3p 2P, which in turn modifies the relative population of the two states. The change in temperature and the population density of the energy states make the sodium line profile revert from absorption into emission. Furthermore, the rapid changes in temperature break the pressure balance between the different layers of the lower atmosphere, generating upflow/downflow patterns. Analysis of the simulated spectra reveals that the asymmetries of the Na i D1 flare profile are produced by the velocity gradients in the lower solar atmosphere.

  16. Modelling of the urban wind profile

    DEFF Research Database (Denmark)

    Gryning, Sven-Erik; Batchvarova, Ekaterina

    2008-01-01

    Analysis of meteorological measurements from tall masts in rural and urban areas show that the height of the boundary layer influences the wind profile even in the lowest hundreds of meters. A parameterization of the wind profile for the entire boundary layer is formulated with emphasis on the lo...

  17. Modeling the quantum interference signatures of the Ba II D2 4554 A line in the second solar spectrum

    CERN Document Server

    Smitha, H N; Stenflo, J O; Sampoorna, M

    2013-01-01

    Quantum interference effects play a vital role in shaping the linear polarization profiles of solar spectral lines. The Ba II D2 line at 4554 A is a prominent example, where the F-state interference effects due to the odd isotopes produce polarization profiles, which are very different from those of the even isotopes that have no F-state interference. It is therefore necessary to account for the contributions from the different isotopes to understand the observed linear polarization profiles of this line. Here we do radiative transfer modeling with partial frequency redistribution (PRD) of such observations while accounting for the interference effects and isotope composition. The Ba II D2 polarization profile is found to be strongly governed by the PRD mechanism. We show how a full PRD treatment succeeds in reproducing the observations, while complete frequency redistribution (CRD) alone fails to produce polarization profiles that have any resemblance with the observed ones. However, we also find that the li...

  18. Hydrostatic grounding line parameterization in ice sheet models

    Directory of Open Access Journals (Sweden)

    H. Seroussi

    2014-06-01

    Full Text Available Modeling of grounding line migration is essential to simulate accurately the behavior of marine ice sheets and investigate their stability. Here, we assess the sensitivity of numerical models to the parameterization of the grounding line position. We run the MISMIP3D benchmark experiments using a two-dimensional shelfy-stream approximation (SSA model with different mesh resolutions and different sub-element parameterizations of grounding line position. Results show that different grounding line parameterizations lead to different steady state grounding line positions as well as different retreat/advance rates. Our simulations explain why some vertically depth-averaged model simulations exhibited behaviors similar to full-Stokes models in the MISMIP3D benchmark, while the vast majority of simulations based on SSA showed results deviating significantly from full-Stokes results. The results reveal that differences between simulations performed with and without sub-element parameterization are as large as those performed with different approximations of the stress balance equations and that the reversibility test can be passed at much lower resolutions than the steady-state grounding line position. We conclude that fixed grid models that do not employ such a parameterization should be avoided, as they do not provide accurate estimates of grounding line dynamics, even at high spatial resolution. For models that include sub-element grounding line parameterization, a mesh resolution lower than 2 km should be employed.

  19. Observations and modelling of line intensity ratios of OV multiplet lines for ? - ?

    Science.gov (United States)

    Kato, T.; Rachlew-Källne, E.; Hörling, P.; Zastrow, K.-D.

    1996-09-01

    Line intensity ratios of OV multiplet lines for the 0953-4075/29/18/019/img3 (J = 2,1,0) transitions are studied using a collisional radiative model and the results are compared with measurements from the reversed field pinch experiments Extrap T1 and T2 at KTH. The measured line intensity ratios deviate from the predictions of the model and the possible causes for the discrepancy are discussed with regard to errors in rate coefficients and non-quasi-steady state.

  20. Predicting Anticancer Drug Responses Using a Dual-Layer Integrated Cell Line-Drug Network Model.

    Directory of Open Access Journals (Sweden)

    Naiqian Zhang

    Full Text Available The ability to predict the response of a cancer patient to a therapeutic agent is a major goal in modern oncology that should ultimately lead to personalized treatment. Existing approaches to predicting drug sensitivity rely primarily on profiling of cancer cell line panels that have been treated with different drugs and selecting genomic or functional genomic features to regress or classify the drug response. Here, we propose a dual-layer integrated cell line-drug network model, which uses both cell line similarity network (CSN data and drug similarity network (DSN data to predict the drug response of a given cell line using a weighted model. Using the Cancer Cell Line Encyclopedia (CCLE and Cancer Genome Project (CGP studies as benchmark datasets, our single-layer model with CSN or DSN and only a single parameter achieved a prediction performance comparable to the previously generated elastic net model. When using the dual-layer model integrating both CSN and DSN, our predicted response reached a 0.6 Pearson correlation coefficient with observed responses for most drugs, which is significantly better than the previous results using the elastic net model. We have also applied the dual-layer cell line-drug integrated network model to fill in the missing drug response values in the CGP dataset. Even though the dual-layer integrated cell line-drug network model does not specifically model mutation information, it correctly predicted that BRAF mutant cell lines would be more sensitive than BRAF wild-type cell lines to three MEK1/2 inhibitors tested.

  1. Modeling of overhead transmission lines for lightning overvoltage calculations

    Energy Technology Data Exchange (ETDEWEB)

    Martinez-Velasco, J.A.; Castro-Aranda, F.

    2010-10-15

    This article discussed the modelling of overhead transmission lines for lightning overvoltage calculations. Such a model must include those parts of the line that get involved when a lightning return stroke hits a wire or a tower and that have some influence on the voltage developed across insulator strings. Modelling guidelines differ depending on whether the goal is to estimate overvoltages or to determine arrester energy stresses. Modelling guidelines were summarized for each component, including shield wires and phase conductors; transmission line towers; insulators; phase voltages at the instant lightning hits the line; surge arresters; and the lightning stroke. The applied Monte Carlo procedure was summarized. For line span models, a constant-parameter model generally suffices when the goal is to calculate overvoltages across insulators or to obtain the flashover rate, but a frequency-dependent parameter model is necessary to estimate the energy discharged by arresters. The model selected for representing towers can have some influence on both flashover rates and arrester energy stresses. The representation of footing impedances is critical for calculating overvoltages and arrester energy stresses, but different modelling techniques produce significantly different results. The models are limited in that the corona effect is not included in the line models, the voltages induced by the electric and magnetic fields of lightning channels to shield wires and phase conductors are neglected, and the footing models are too simple, but they are nonetheless realistic approaches for simulating lightning effects. 2 tabs., 9 figs.

  2. Approximate Stokes Drift Profiles and their use in Ocean Modelling

    Science.gov (United States)

    Breivik, Oyvind; Bidlot, Jea-Raymond; Janssen, Peter A. E. M.; Mogensen, Kristian

    2016-04-01

    Deep-water approximations to the Stokes drift velocity profile are explored as alternatives to the monochromatic profile. The alternative profiles investigated rely on the same two quantities required for the monochromatic profile, viz the Stokes transport and the surface Stokes drift velocity. Comparisons against parametric spectra and profiles under wave spectra from the ERA-Interim reanalysis and buoy observations reveal much better agreement than the monochromatic profile even for complex sea states. That the profiles give a closer match and a more correct shear has implications for ocean circulation models since the Coriolis-Stokes force depends on the magnitude and direction of the Stokes drift profile and Langmuir turbulence parameterizations depend sensitively on the shear of the profile. Of the two Stokes drift profiles explored here, the profile based on the Phillips spectrum is by far the best. In particular, the shear near the surface is almost identical to that influenced by the f-5 tail of spectral wave models. The NEMO general circulation ocean model was recently extended to incorporate the Stokes-Coriolis force along with two other wave-related effects. The ECWMF coupled atmosphere-wave-ocean ensemble forecast system now includes these wave effects in the ocean model component (NEMO).

  3. Using Line Profiles to Test the Fraternity of Type Ia Supernovae at High and Low Redshifts

    Science.gov (United States)

    Blondin, Stéphane; Dessart, Luc; Leibundgut, Bruno; Branch, David; Höflich, Peter; Tonry, John L.; Matheson, Thomas; Foley, Ryan J.; Chornock, Ryan; Filippenko, Alexei V.; Sollerman, Jesper; Spyromilio, Jason; Kirshner, Robert P.; Wood-Vasey, W. Michael; Clocchiatti, Alejandro; Aguilera, Claudio; Barris, Brian; Becker, Andrew C.; Challis, Peter; Covarrubias, Ricardo; Davis, Tamara M.; Garnavich, Peter; Hicken, Malcolm; Jha, Saurabh; Krisciunas, Kevin; Li, Weidong; Miceli, Anthony; Miknaitis, Gajus; Pignata, Giuliano; Prieto, Jose Luis; Rest, Armin; Riess, Adam G.; Salvo, Maria Elena; Schmidt, Brian P.; Smith, R. Chris; Stubbs, Christopher W.; Suntzeff, Nicholas B.

    2006-03-01

    Using archival data of low-redshift (zdatabases) Type Ia supernovae (SNe Ia) and recent observations of high-redshift (0.161.7] SNe Ia, which are also subluminous. In addition, we give the first direct evidence in two high-z SN Ia spectra of a double-absorption feature in Ca II λ3945, an event also observed, although infrequently, in low-redshift SN Ia spectra (6 out of 22 SNe Ia in our local sample). Moreover, echoing the recent studies of Dessart & Hillier in the context of Type II supernovae (SNe II), we see similar P Cygni line profiles in our large sample of SN Ia spectra. First, the magnitude of the velocity location at maximum profile absorption may underestimate that at the continuum photosphere, as observed, for example, in the optically thinner line S II λ5640. Second, we report for the first time the unambiguous and systematic intrinsic blueshift of peak emission of optical P Cygni line profiles in SN Ia spectra, by as much as 8000 km s-1. All the high-z SNe Ia analyzed in this paper were discovered and followed up by the ESSENCE collaboration and are now publicly available. Based in part on observations obtained at the Cerro Tololo Inter-American Observatory, which is operated by the Association of Universities for Research in Astronomy (AURA), Inc., under cooperative agreement with the National Science Foundation (NSF); the European Southern Observatory, Chile (ESO program 170.A-0519) the Gemini Observatory, which is operated by AURA under a cooperative agreement with the NSF on behalf of the Gemini partnership (the NSF [United States], the Particle Physics and Astronomy Research Council [United Kingdom], the National Research Council [Canada], CONICYT [Chile], the Australian Research Council [Australia], CNPq [Brazil], and CONICET [Argentina]) (programs GN-2002B-Q-14, GN-2003B-Q-11, and GS-2003B-Q-11) the Magellan Telescopes at Las Campanas Observatory; the MMT Observatory, a joint facility of the Smithsonian Institution and the University of

  4. Vortex line density in counterflowing He II with laminar and turbulent normal fluid velocity profiles

    CERN Document Server

    Baggaley, A W

    2013-01-01

    Superfluid helium is an intimate mixture of a viscous normal fluid, with continuous vorticity, and an inviscid superfluid, where vorticity is constrained to thin, stable topological defects. One mechanism to generate turbulence in this system is through the application of a heat flux, so called thermal counterflow. Of particular interest is how turbulence in the superfluid responds to both a laminar and turbulent normal fluid in the presence of walls. We model superfluid vortex lines as reconnecting space curves with fixed circulation, and consider both laminar (Poiseuille) and turbulent normal fluid flows in a channel configuration. Using high resolution numerical simulations we show that turbulence in the normal fluid sustains a notably higher vortex line density than a laminar flow with the same mean flow rate. We exam Vinen's relation, $\\sqrt{L}=\\gamma v_{ns}$, between the steady state vortex line density $L$ and the counterflow velocity $v_{ns}$. Our results support the hypothesis that transition to turb...

  5. High-resolution H-band spectroscopy of Be stars with SDSS-III/apogee. I. New Be stars, line identifications, and line profiles

    Energy Technology Data Exchange (ETDEWEB)

    Chojnowski, S. Drew; Majewski, Steven R.; Hall, Matthew; Beaton, Rachael; Burton, Adam; Damke, Guillermo; Wilson, John [Department of Astronomy, University of Virginia, P.O. Box 400325, Charlottesville, VA 22904-4325 (United States); Whelan, David G. [Department of Physics, Austin College, 900 N. Grand Ave., Sherman, TX 75090 (United States); Wisniewski, John P. [Department of Physics and Astronomy, The University of Oklahoma, 440 W. Brooks St., Norman, OK 73019 (United States); Shetrone, Matthew [Department of Astronomy, The University of Texas at Austin, 2515 Speedway, Stop C1400 Austin, Texas 78712-1205 (United States); Eikenberry, Steve [Department of Astronomy, University of Florida, 211 Bryant Space Science Center, Gainesville, FL 32611-2055 (United States); Hasselquist, Sten; Holtzman, Jon A.; Brewington, Howard; Brinkmann, J. [Apache Point Observatory and New Mexico State University, P.O. Box 59, Sunspot, NM, 88349-0059 (United States); Mészáros, Szabolcs [ELTE Gothard Astrophysical Observatory, 1H-9704 Szombathely, Szent Imre herceg st. 112 (Hungary); Nidever, David [Department of Astronomy, University of Michigan, 830 Dennison, 500 Church St., Ann Arbor, MI 48109-1042 (United States); Schneider, Donald P. [Department of Astronomy and Astrophysics, The Pennsylvania State University, University Park, PA 16802 (United States); Zasowski, Gail [Department of Physics and Astronomy, Johns Hopkins University, Bloomberg Center for Physics and Astronomy, Room 366, 3400 N. Charles Street, Baltimore, MD 21218 (United States); Bizyaev, Dmitry, E-mail: drewski@virginia.edu [Institute for Gravitation and the Cosmos, The Pennsylvania State University, University Park, PA 16802 (United States); and others

    2015-01-01

    The Apache Point Observatory Galactic Evolution Experiment (APOGEE) has amassed the largest ever collection of multi-epoch, high-resolution (R∼22,500), H-band spectra for B-type emission line (Be) stars. These stars were targeted by APOGEE as telluric standard stars and subsequently identified via visual inspection as Be stars based on H i Brackett series emission or shell absorption in addition to otherwise smooth continua and occasionally non-hydrogen emission features. The 128/238 APOGEE Be stars for which emission had never previously been reported serve to increase the total number of known Be stars by ∼6%. Because the H band is relatively unexplored compared to other wavelength regimes, we focus here on identification of the H-band lines and analysis of the emission peak velocity separations (Δv{sub p}) and emission peak intensity ratios (V/R) of the usually double-peaked H i and non-hydrogen emission lines. H i Br11 emission is found to preferentially form in the circumstellar disks at an average distance of ∼2.2 stellar radii. Increasing Δv{sub p} toward the weaker Br12–Br20 lines suggests these lines are formed interior to Br11. By contrast, the observed IR Fe ii emission lines present evidence of having significantly larger formation radii; distinctive phase lags between IR Fe ii and H i Brackett emission lines further supports that these species arise from different radii in Be disks. Several emission lines have been identified for the first time including C i 16895, a prominent feature in the spectra for almost a fifth of the sample and, as inferred from relatively large Δv{sub p} compared to the Br11–Br20, a tracer of the inner regions of Be disks. Emission lines at 15760 Å and 16781 Å remain unidentified, but usually appear along with and always have similar line profile morphology to Fe ii 16878. Unlike the typical metallic lines observed for Be stars in the optical, the H-band metallic lines, such as Fe ii 16878, never exhibit any

  6. Measuring and modeling suspended sediment concentration profiles in the surf zone

    Institute of Scientific and Technical Information of China (English)

    2012-01-01

    Time-averaged suspended sediment concentration profiles across the surf zone were measured in a large-scale three-dimensional movable bed laboratory facility (LSTF:Large-scale Sediment Transport Facility). Sediment suspension under two different types of breaking waves, spilling and plunging breakers, was investigated. The magnitudes and shapes of the concentration profiles varied substantially at different locations across the surf zone, reflecting the different intensities of breaking-induced turbulence. Sediment sus- pension at the energetic plunging breaker-line was much more active, resulting in nearly homogeneous concentration profiles throughout most of the water column, as compared to the reminder of the surf zone and at the spilling breaker-line. Four suspended sediment concentration models were examined based on the LSTF data, including the mixing turbulence length approach, segment eddy viscosity model, breaking-induced wave-energy dissipation approach, and a combined breaking and turbulence length model developed by this study. Neglecting the breaking-induced turbulence and subsequent sediment mixing, suspended sediment concentration models failed to predict the across-shore variations of the sediment suspension, especially at the plunging breaker-line. Wave-energy dissipation rate provided an accurate method for estimating the intensity of turbulence generated by wave breaking. By incorporating the breaking-induced turbulence, the combined breaking and turbulence length model reproduced the across-shore variation of sediment suspension in the surf zone. The combined model reproduced the measured time-averaged suspended sediment concentration profiles reasonably well across the surf zone.

  7. A Network Model for Parallel Line Balancing Problem

    Directory of Open Access Journals (Sweden)

    Recep Benzer

    2007-01-01

    Full Text Available Gökçen et al. (2006 have proposed several procedures and a mathematical model on single-model (product assembly line balancing (ALB problem with parallel lines. In parallel ALB problem, the goal is to balance more than one assembly line together. In this paper, a network model for parallel ALB problem has been proposed and illustrated on a numerical example. This model is a new approach for parallel ALB and it provides a different point of view for interested researchers.

  8. Mid-Infrared [NeII] and [NeIII] Emission Line Profiles in Starbursts and AGN

    Science.gov (United States)

    Samsonyan, A. L.

    2016-09-01

    Line profiles and velocities of the [CII] 157μm line observed with the Herschel PACS instrument are compared to high resolution [NeII] 12.81μm and [NeIII] 15.55μm emission lines observed with the Spitzer Infrared Spectrograph (IRS). We are analysing spectra of at least 400 galaxies having both IRS high resolution and Herschel PACS [CII] line profiles that are available from the public archives. The goal of the work is the comparison of emission line velocity profiles and fluxes to locate and understand differences in the origins of [CII] compared to the mid-infrared Neon lines. Line velocities and widths are carefully measured, and errors are analyzed to determine if there is any kinematic evidence for [CII] arising from clouds not visible in the mid-infrared emission lines. This will give an answer to two questions: 1. Is there evidence that [CII] is more diffuse, distributed throughout galaxies, than the mid infrared starburst indicators [NeII] and [NeIII]?; 2. Is there evidence for specific, very dusty clouds of [CII] with so much extinction that the [CII] can be seen but the [NeII] and [NeIII] is not seen?

  9. Radial velocities of giant stars: an investigation of line profile variations

    Energy Technology Data Exchange (ETDEWEB)

    Hekker, S; Snellen, I A G [Leiden Observatory, Leiden University, PO Box 9513, 2300 RA Leiden (Netherlands); Aerts, C [Instituut voor Sterrenkunde, KU Leuven, Celestijnenlaan 200D, 3001 Leuven (Belgium); Quirrenbach, A; Reffert, S [ZAH, Landessternwarte Heidelberg, Koenigstuhl 12, D-69117 Heidelberg (Germany); Mitchell, D S [California Polytechnic State University, San Luis Obispo, CA 93407 (United States)], E-mail: saskia@strw.leidenuniv.nl

    2008-10-15

    Since 1999, a radial velocity survey of 179 red giant stars is ongoing at Lick Observatory with a one month cadence. At present{approx}20-100 measurements have been collected per star with an accuracy of 5 to 8 ms{sup -1}. Of the stars monitored, 145 (80%) show radial velocity (RV) variations at a level >20 ms{sup -1}, of which 43 exhibit significant periodicities. Here, we investigate the mechanism causing the observed radial velocity variations. Firstly, we search for a correlation between the radial velocity amplitude and an intrinsic parameter of the star, in this case surface gravity (logg). Secondly, we investigate line profile variations and compare these with theoretical predictions.

  10. Multi-omic profiling of MYCN-amplified neuroblastoma cell-lines

    Directory of Open Access Journals (Sweden)

    Erik Dassi

    2015-12-01

    Full Text Available Neuroblastoma is the most common pediatric cancer, arising from the neural crest cells of the sympathetic nervous system. Its most aggressive subtype, characterized by the amplification of the MYCN oncogene, has a dismal prognosis and no effective treatment is available. Understanding the alterations induced by the tumor on the various layers of gene expression is therefore important for a complete characterization of this neuroblastoma subtype and for the discovery of new therapeutic opportunities. Here we describe the profiling of 13 MYCN-amplified neuroblastoma cell lines at the genome (copy number, transcriptome, translatome and miRome levels (GEO series GSE56654, GSE56552 and GSE56655. We provide detailed experimental and data analysis procedures by means of which we derived the results described in [1].

  11. Valproic acid improves second-line regimen of small cell lung carcinoma in preclinical models

    Directory of Open Access Journals (Sweden)

    Roland Hubaux

    2015-10-01

    Full Text Available With 5-year survival rates below 5%, small cell lung carcinoma (SCLC has very poor prognosis and requires improved therapies. Despite an excellent overall response to first-line therapy, relapses are frequent and further treatments are disappointing. The goal of the study was to improve second-line therapy of SCLC. The effect of chemotherapeutic agents was evaluated in cell lines (apoptosis, reactive oxygen species, and RNA and protein expression and in mouse models (tumour development. We demonstrate here that valproic acid, a histone deacetylase inhibitor, improves the efficacy of a second-line regimen (vindesine, doxorubicin and cyclophosphamide in SCLC cells and in mouse models. Transcriptomic profiling integrating microRNA and mRNA data identifies key signalling pathways in the response of SCLC cells to valproic acid, opening new prospects for improved therapies.

  12. LINES

    Directory of Open Access Journals (Sweden)

    Minas Bakalchev

    2015-10-01

    Full Text Available The perception of elements in a system often creates their interdependence, interconditionality, and suppression. The lines from a basic geometrical element have become the model of a reductive world based on isolation according to certain criteria such as function, structure, and social organization. Their traces are experienced in the contemporary world as fragments or ruins of a system of domination of an assumed hierarchical unity. How can one release oneself from such dependence or determinism? How can the lines become less “systematic” and forms more autonomous, and less reductive? How is a form released from modernistic determinism on the new controversial ground? How can these elements or forms of representation become forms of action in the present complex world? In this paper, the meaning of lines through the ideas of Le Corbusier, Leonidov, Picasso, and Hitchcock is presented. Spatial research was made through a series of examples arising from the projects of the architectural studio “Residential Transformations”, which was a backbone for mapping the possibilities ranging from playfulness to exactness, as tactics of transformation in the different contexts of the contemporary world.

  13. Social Profiles and Social Behaviour and Attitudes towards Gaming and On-Line Gaming in Spain

    Directory of Open Access Journals (Sweden)

    Francisco Javier RUIZ MARTÍNEZ

    2011-12-01

    Full Text Available For the last two decades our world has experienced increasing globalization linked to the revolution in Information and Communication Technologies (ICT leading to new business spheres escaping from the traditional Nation-State control. The gaming business is one of these areas and has recorded a notable increase in profits in the last decade: gambling, betting and network games constitute some of the main issues developed by ICT companies located beyond State control. The action of the States is focusing on the formulation of new public policies that allow them to control these activities. But first a deep social description of gaming is needed to know which actors are involved in this field of activities, which is the profile of the gamer and what kind of social attitudes are carried out by users and companies taking part of the business. This article focuses on the social profiles and the social behaviour and attitudes towards gaming in Spain, and specially in the transition from traditional gaming to on line gaming.

  14. A Multilevel Nonlinear Profile Analysis Model for Dichotomous Data

    Science.gov (United States)

    Culpepper, Steven Andrew

    2009-01-01

    This study linked nonlinear profile analysis (NPA) of dichotomous responses with an existing family of item response theory models and generalized latent variable models (GLVM). The NPA method offers several benefits over previous internal profile analysis methods: (a) NPA is estimated with maximum likelihood in a GLVM framework rather than…

  15. Observations and simulations of the Na I D1 line profiles in an M-class solar flare

    CERN Document Server

    Kuridze, D; Christian, D J; Kowalski, A F; Jess, D B; Grant, S D T; Kawate, T; Simões, P J A; Allred, J C; Keenan, F P

    2016-01-01

    We study the temporal evolution of the Na I D1 line profiles in the M3.9 flare SOL2014-06-11T21:03 UT, using high spectral resolution observations obtained with the IBIS instrument on the Dunn Solar Telescope combined with radiative hydrodynamic simulations. Our results show a significant increase in line core and wing intensities during the flare. The analysis of the line profiles from the flare ribbons reveal that the Na I D1 line has a central reversal with excess emission in the blue wing (blue asymmetry). We combine RADYN and RH simulations to synthesise Na I D1 line profiles of the flaring atmosphere and find good agreement with the observations. Heating with a beam of electrons modifies the radiation field in the flaring atmosphere and excites electrons from the ground state $\\mathrm{3s~^2S}$ to the first excited state $\\mathrm{3p~^2P}$, which in turn modifies relative population of the two states. The change in temperature and the population density of the energy states make the sodium line profile re...

  16. Small RNA Profiles of the Rice PTGMS Line Wuxiang S Reveal miRNAs Involved in Fertility Transition.

    Science.gov (United States)

    Zhang, Hongyuan; Hu, Jihong; Qian, Qian; Chen, Hao; Jin, Jing; Ding, Yi

    2016-01-01

    MicroRNAs (miRNAs) play key roles in the regulation of plant growth and developmental processes. In this study, RNA-seq was used to examine the expression profiles of miRNAs in a novel, photo-thermosensitive genic male sterile (PTGMS) rice line, Wuxiang S (WXS), during fertility transition. A total of 497 known miRNAs and 273 novel miRNAs were identified. In a differential expression analysis, 26 miRNAs exhibited significant differential expression between WXS (Sterile, S) and WXS (Fertile, F). Some of these miRNAs were validated by quantitative real-time PCR. Among these miRNAs, 11 showed decreased expression levels, and 15 showed increased expression levels in WXS (S) compared to WXS (F). Some of these miRNAs, such as osa-miR156a-j, osa-miR164d, and osa-miR528, were shown to be negatively correlated with their targets. These targets have previously been reported to be related to pollen development and male sterility, suggesting that these miRNAs may be involved in the regulation of pollen development in the rice PTGMS line WXS. Furthermore, miRNA-mediated editing events were also observed. In this study, a possible model for the control of signaling pathways during the process of fertility transition in the rice PTGMS line WXS by miRNAs was developed. These findings contribute to our understanding of the roles of miRNAs during anther development in PTGMS lines in rice.

  17. Riboswitch Detection Using Profile Hidden Markov Models

    Directory of Open Access Journals (Sweden)

    Krishnamachari A

    2009-10-01

    Full Text Available Abstract Background Riboswitches are a type of noncoding RNA that regulate gene expression by switching from one structural conformation to another on ligand binding. The various classes of riboswitches discovered so far are differentiated by the ligand, which on binding induces a conformational switch. Every class of riboswitch is characterized by an aptamer domain, which provides the site for ligand binding, and an expression platform that undergoes conformational change on ligand binding. The sequence and structure of the aptamer domain is highly conserved in riboswitches belonging to the same class. We propose a method for fast and accurate identification of riboswitches using profile Hidden Markov Models (pHMM. Our method exploits the high degree of sequence conservation that characterizes the aptamer domain. Results Our method can detect riboswitches in genomic databases rapidly and accurately. Its sensitivity is comparable to the method based on the Covariance Model (CM. For six out of ten riboswitch classes, our method detects more than 99.5% of the candidates identified by the much slower CM method while being several hundred times faster. For three riboswitch classes, our method detects 97-99% of the candidates relative to the CM method. Our method works very well for those classes of riboswitches that are characterized by distinct and conserved sequence motifs. Conclusion Riboswitches play a crucial role in controlling the expression of several prokaryotic genes involved in metabolism and transport processes. As more and more new classes of riboswitches are being discovered, it is important to understand the patterns of their intra and inter genomic distribution. Understanding such patterns will enable us to better understand the evolutionary history of these genetic regulatory elements. However, a complete picture of the distribution pattern of riboswitches will emerge only after accurate identification of riboswitches across genomes

  18. Extracellular matrix proteins expression profiling in chemoresistant variants of the A2780 ovarian cancer cell line.

    Science.gov (United States)

    Januchowski, Radosław; Zawierucha, Piotr; Ruciński, Marcin; Nowicki, Michał; Zabel, Maciej

    2014-01-01

    Ovarian cancer is the leading cause of death among gynaecological malignancies. Extracellular matrix (ECM) can affect drug resistance by preventing the penetration of the drug into cancer cells and increased resistance to apoptosis. This study demonstrates alterations in the expression levels of ECM components and related genes in cisplatin-, doxorubicin-, topotecan-, and paclitaxel-resistant variants of the A2780 ovarian cancer cell line. Affymetrix Gene Chip Human Genome Array Strips were used for hybridisations. The genes that had altered expression levels in drug-resistant sublines were selected and filtered by scatter plots. The genes that were up- or downregulated more than fivefold were selected and listed. Among the investigated genes, 28 genes were upregulated, 10 genes were downregulated, and two genes were down- or upregulated depending on the cell line. Between upregulated genes 12 were upregulated very significantly--over 20-fold. These genes included COL1A2, COL12A1, COL21A1, LOX, TGFBI, LAMB1, EFEMP1, GPC3, SDC2, MGP, MMP3, and TIMP3. Four genes were very significantly downregulated: COL11A1, LAMA2, GPC6, and LUM. The expression profiles of investigated genes provide a preliminary insight into the relationship between drug resistance and the expression of ECM components. Identifying correlations between investigated genes and drug resistance will require further analysis.

  19. Gene Expression Profile of Multiple Myeloma Cell Line Treated by Arsenic Trioxide

    Institute of Scientific and Technical Information of China (English)

    WANG Mengchang; LIU Shaanxi; LIU Pengbo

    2007-01-01

    cDNA microarray was used to compare the gone expression profiles of multiple myeloma cell line RPMI8226 24 h before and after treatment with arsenic trioxide. Two eDNA probes were prepared by mRNA reverse transcription of both arsenic trioxide-treated and untreated RPMI8226 cells. The probes were labeled with Cy3 and Cy5 fluorescence dyes separately, hybridized with cDNA microarray representing 4096 different human genes, and scanned for fluorescence intensity. The differences in gene expression were calculated on the basis of the ratios of signal intensity of treated and untreated samples. The up- and down-regulated genes were screened through the analysis of gene expression ratios. The results showed that 273 genes were differentially altered at mRNA level, 121 genes were up-regulated and 152 were down-regulated. It is concluded that the treatment with arsenic trioxide can induce a variety of gene changes in RPMI8226 cell line. Many genes may be involved in the pathogenesis of multiple myeloma. ALK-1 and TXNIP genes may play an impor- tant role in the apoptosis and partial differentiation of RPMI8226 cells.

  20. Five Mass Power Transmission Line of a Ship Computer Modelling

    Directory of Open Access Journals (Sweden)

    Kazakoff Alexander Borisoff

    2016-03-01

    Full Text Available The work, presented in this paper, appears to be a natural continuation of the work presented and reported before, on the design of power transmission line of a ship, but with different multi-mass model. Some data from the previous investigations are used as a reference data, mainly from the analytical investigations, for the developed in the previ- ous study, frequency and modal analysis of a five mass model of a power transmission line of a ship. In the paper, a profound dynamic analysis of a concrete five mass dynamic model of the power transmission line of a ship is performed using Finite Element Analysis (FEA, based on the previously recommended model, investigated in the previous research and reported before. Thus, the partially validated by frequency analysis five mass model of a power transmission line of a ship is subjected to dynamic analysis. The objective of the work presented in this paper is dynamic modelling of a five mass transmission line of a ship, partial validation of the model and von Mises stress analysis calculation with the help of Finite Element Analysis (FEA and comparison of the derived results with the analytically calculated values. The partially validated five mass power transmission line of a ship can be used for definition of many dy- namic parameters, particularly amplitude of displacement, velocity and acceleration, respectively in time and frequency domain. The frequency behaviour of the model parameters is investigated in frequency domain and it corresponds to the predicted one.

  1. Continuum and line modelling of discs around young stars - I. 300000 disc models for HERSCHEL/GASPS

    Science.gov (United States)

    Woitke, P.; Pinte, C.; Tilling, I.; Ménard, F.; Kamp, I.; Thi, W.-F.; Duchêne, G.; Augereau, J.-C.

    2010-06-01

    We have combined the thermo-chemical disc code ProDiMo with the Monte Carlo radiative transfer code MCFOST to calculate a grid of ~300000 circumstellar disc models, systematically varying 11 stellar, disc and dust parameters including the total disc mass, several disc shape parameters and the dust-to-gas ratio. For each model, dust continuum and line radiative transfer calculations are carried out for 29 far-infrared, sub-mm and mm lines of [OI], [CII], 12CO and o/p-H2O under five inclinations. The grid allows us to study the influence of the input parameters on the observables, to make statistical predictions for different types of circumstellar discs and to find systematic trends and correlations between the parameters, the continuum fluxes and the line fluxes. The model grid, comprising the calculated disc temperature and chemical structures, the computed spectral energy distributions, line fluxes and profiles, will be used in particular for the data interpretation of the HERSCHEL open time-key program GASPS. The calculated line fluxes show a strong dependence on the assumed ultraviolet excess of the central star and on the disc flaring. The fraction of models predicting [OI] and [CII] fine-structure lines fluxes above HERSCHEL/PACS and SPICA/SAFARI detection limits is calculated as a function of disc mass. The possibility of deriving the disc gas mass from line observations is discussed.

  2. Modeling and clustering users with evolving profiles in usage streams

    KAUST Repository

    Zhang, Chongsheng

    2012-09-01

    Today, there is an increasing need of data stream mining technology to discover important patterns on the fly. Existing data stream models and algorithms commonly assume that users\\' records or profiles in data streams will not be updated or revised once they arrive. Nevertheless, in various applications such asWeb usage, the records/profiles of the users can evolve along time. This kind of streaming data evolves in two forms, the streaming of tuples or transactions as in the case of traditional data streams, and more importantly, the evolving of user records/profiles inside the streams. Such data streams bring difficulties on modeling and clustering for exploring users\\' behaviors. In this paper, we propose three models to summarize this kind of data streams, which are the batch model, the Evolving Objects (EO) model and the Dynamic Data Stream (DDS) model. Through creating, updating and deleting user profiles, these models summarize the behaviors of each user as a profile object. Based upon these models, clustering algorithms are employed to discover interesting user groups from the profile objects. We have evaluated all the proposed models on a large real-world data set, showing that the DDS model summarizes the data streams with evolving tuples more efficiently and effectively, and provides better basis for clustering users than the other two models. © 2012 IEEE.

  3. Propagation of microwaves in gradient transmission lines: exactly solvable model

    Science.gov (United States)

    Shvartsburg, A. B.; Silin, N. V.

    2015-08-01

    Propagation of microwaves along the transmission line with smoothly continuously distributed capacitance and inductance (gradient transmission line) is considered in the framework of an exactly solvable model. The appearance of strong heterogeneity-induced plasma-like dispersion in gradient transmission line determined by the sizes and shapes of these distributions, is visualized by means of this model. Owing to this dispersion the energy transport in the line discussed can be ensured by both travelling and evanescent microwave modes, characterized by the real and imaginary wave numbers, respectively. The reflectance spectra for microwaves, incident on this heterogeneous transition section located between two homogeneous sections of transmission line are presented, the antireflection properties of this section are demonstrated. The interference of evanescent and anti-evanescent microwave modes is shown to provide the effective weakly attenuated energy transfer in the tunneling regime. The analogy between this microwave system and gradient nano-optical photonic barrier in revealed.

  4. Caustics and Caustic-Diffraction in Laser Shadowgraphy of a Sessile Drop and Identification of Profile Near Contact Line

    Science.gov (United States)

    Zhang, Neng-Li; Chao, David F.

    2003-01-01

    This paper presents an optical method based on the caustics and caustic-difraction in laser shadowgaphy of a sessile drop to identify and estimate the drop profile near the contact line. A parallel laser beam passes through a liquid sessile drop placed on a transparent substrate to produce a shadowgraphic image of the drop on the screen far from the substrate. Along the inflection line of the drop the Gaussian curvature of the wavefront deformed by the drop vanishes, and therefore the inflection line gives caustics in the far field of the wave, which can be seen on the screen. The neighboring light rays at both sides of the inflection line interfere with each other to form interference fringes at the inner side of the caustics. According to the pattern of the caustics, the drop-profile shape can be identified and estimated.

  5. Propagation models for non line-of-sight scenarios

    Science.gov (United States)

    Tasu, A. S.; Anchidin, L.; Tamas, R.; Petrescu, T.

    2016-12-01

    The log-normal propagation model is usually applied for scenarios including a line-of-sight path. However, there are many cases that do not include such a propagation path, e.g. indoor transmission and disaster situations, when radio waves have to penetrate trough ruins. In this paper, we show that the log-normal model can also be applied for non line-of-sight transmission. Both indoor scenario and trough-ruins scenario, are investigated.

  6. Model driven product line engineering : core asset and process implications

    OpenAIRE

    Azanza Sesé, Maider

    2011-01-01

    Reuse is at the heart of major improvements in productivity and quality in Software Engineering. Both Model Driven Engineering (MDE) and Software Product Line Engineering (SPLE) are software development paradigms that promote reuse. Specifically, they promote systematic reuse and a departure from craftsmanship towards an industrialization of the software development process. MDE and SPLE have established their benefits separately. Their combination, here called Model Driven Product Line Engin...

  7. Physiological basis and transcriptional profiling of three salt-tolerant mutant lines of rice

    Directory of Open Access Journals (Sweden)

    Concha Domingo

    2016-09-01

    Full Text Available Salinity is a complex trait that affects growth and productivity in many crops, including rice. Mutation induction, a useful tool to generate salt tolerant plants, enables the analysis of plants with similar genetic background, facilitating the understanding of the salt tolerance mechanisms. In this work, we generated three salt tolerant mutant lines by irradiation of a salt-sensitive cultivar plants and screened M2 plants at seedling stage in the presence of high salinity. These three lines, SaT20, SaS62 and SaT58, showed different responses to salinity, but exhibited similar phenotype to wild type plants, except SaT20 that displayed shorter height when grown in the absence of salt. Under salt conditions, all three mutants and the parental line showed similar reduction in yield, although relevant differences in other physiological parameters, such as Na+ accumulation in healthy leaves of SaT20, were registered. Microarray analyses of gene expression profiles in roots revealed the occurrence of common and specific responses in the mutants. The three mutants showed up-regulation of responsive genes, the activation of oxido-reduction process and the inhibition of ion transport. The participation of jasmonate in the plant response to salt was evident by down-regulation of a gene coding for a jasmonate O-methyltransferase. Genes dealing with lipid transport and metabolism were, in general, up-regulated except in SaS62, that also exhibited down-regulation of genes involved in ion transport and Ca2+ signal transduction. The two most tolerant varieties, SaS62 and SaT20, displayed lower levels of transcripts involved in K+ uptake. The physiological study and the description of the expression analysis evidenced that the three lines showed different responses to salt: SaT20 showed a high Na+ content in leaves, SaS62 presented an inhibition of lipid metabolism and ion transport and SaT58 differs in both features in the response to salinity. The analysis of

  8. Integrative fitting of absorption line profiles with high accuracy, robustness, and speed

    Science.gov (United States)

    Skrotzki, Julian; Habig, Jan Christoph; Ebert, Volker

    2014-08-01

    The principle of the integrative evaluation of absorption line profiles relies on the numeric integration of absorption line signals to retrieve absorber concentrations, e.g., of trace gases. Thus, it is a fast and robust technique. However, previous implementations of the integrative evaluation principle showed shortcomings in terms of accuracy and the lack of a fit quality indicator. This has motivated the development of an advanced integrative (AI) fitting algorithm. The AI fitting algorithm retains the advantages of previous integrative implementations—robustness and speed—and is able to achieve high accuracy by introduction of a novel iterative fitting process. A comparison of the AI fitting algorithm with the widely used Levenberg-Marquardt (LM) fitting algorithm indicates that the AI algorithm has advantages in terms of robustness due to its independence from appropriately chosen start values for the initialization of the fitting process. In addition, the AI fitting algorithm shows speed advantages typically resulting in a factor of three to four shorter computational times on a standard personal computer. The LM algorithm on the other hand retains advantages in terms of a much higher flexibility, as the AI fitting algorithm is restricted to the evaluation of single absorption lines with precomputed line width. Comparing both fitting algorithms for the specific application of in situ laser hygrometry at 1,370 nm using direct tunable diode laser absorption spectroscopy (TDLAS) suggests that the accuracy of the AI algorithm is equivalent to that of the LM algorithm. For example, a signal-to-noise ratio of 80 and better typically yields a deviation of TDLAS hygrometry at the aerosol and cloud chamber aerosol interactions and dynamics in the atmosphere (AIDA)—a unique large-scale facility to study atmospheric processes. The robustness of the AI fitting algorithm has been validated for typical AIDA conditions encompassing strong transmission fluctuations

  9. Physiological Basis and Transcriptional Profiling of Three Salt-Tolerant Mutant Lines of Rice

    Science.gov (United States)

    Domingo, Concha; Lalanne, Eric; Catalá, María M.; Pla, Eva; Reig-Valiente, Juan L.; Talón, Manuel

    2016-01-01

    Salinity is a complex trait that affects growth and productivity in many crops, including rice. Mutation induction, a useful tool to generate salt tolerant plants, enables the analysis of plants with similar genetic background, facilitating the understanding of the salt tolerance mechanisms. In this work, we generated three salt tolerant mutant lines by irradiation of a salt-sensitive cultivar plants and screened M2 plants at seedling stage in the presence of high salinity. These three lines, SaT20, SaS62, and SaT58, showed different responses to salinity, but exhibited similar phenotype to wild type plants, except SaT20 that displayed shorter height when grown in the absence of salt. Under salt conditions, all three mutants and the parental line showed similar reduction in yield, although relevant differences in other physiological parameters, such as Na+ accumulation in healthy leaves of SaT20, were registered. Microarray analyses of gene expression profiles in roots revealed the occurrence of common and specific responses in the mutants. The three mutants showed up-regulation of responsive genes, the activation of oxido-reduction process and the inhibition of ion transport. The participation of jasmonate in the plant response to salt was evident by down-regulation of a gene coding for a jasmonate O-methyltransferase. Genes dealing with lipid transport and metabolism were, in general, up-regulated except in SaS62, that also exhibited down-regulation of genes involved in ion transport and Ca2+ signal transduction. The two most tolerant varieties, SaS62 and SaT20, displayed lower levels of transcripts involved in K+ uptake. The physiological study and the description of the expression analysis evidenced that the three lines showed different responses to salt: SaT20 showed a high Na+ content in leaves, SaS62 presented an inhibition of lipid metabolism and ion transport and SaT58 differs in both features in the response to salinity. The analysis of these salt

  10. IDENTIFIKASI PROFIL DASAR LAUT MENGGUNAKAN INSTRUMEN SIDE SCAN SONAR DENGAN METODE BEAM PATTERN DISCRETE-EQUI-SPACED UNSHADED LINE ARRAY

    Directory of Open Access Journals (Sweden)

    Muhammad Zainuddin Lubis

    2017-05-01

    Full Text Available Laut Punggur merupakan laut yang terletak di Batam, Kepulauan Riau yang mempunyai beragam habitat objek,dan bentuk struktur bawah laut yang memiliki dinamika laut yang sangat tinggi. Side scan sonar (SSS merupakan instrumen pengembangan sistem sonar yang mampu menunjukkan dalam gambar dua dimensional permukaan dasar laut dengan kondisi kontur, topografi, dan target secara bersamaan. Metode Beam Pattern Discrete-Equi-Spaced Unshaded Line Array digunakan untuk menghitung beam pattern dua dimensi yang tergantung pada sudut dari gelombang suara yang masuk dari sumbu array yang diterima tergantung pada sudut di mana sinar suara pada array. Penelitian ini dilakukan pada Desember 2016 di laut Punggur,Batam, Kepulauan Riau-Indonesia, dengan koordinat 104 ° 08,7102 E dan 1° 03,2448 N sampai 1 ° 03.3977 N dan 104 ° 08,8133 E, menggunakan instrumen Side Scan Sonar C-Max CM2 Tow fish dengan frekuensi 325 kHz. Hasil yang diperoleh dari perekaman terdapat 7 target, dan Beam pattern dari metode Beam Discrete-Equi-Spaced Unshaded Line Array target 4 memiliki nilai tertinggi pada directivity Pattern yaitu 21.08 dB. Hasil model beam pattern ini memiliki nilai pusat pada incidence angle (o terhadap Directivity pattern (dB tidak berada di nilai 0 ataupun pada pusat beam pattern yang dihasilkan pada target 6 dengan nilai incident angle -1.5 o dan 1.5o mengalami penurunan hingga -40 dB. Karakteristik sedimen dasar perairan di laut punggur ditemukan lebih banyak pasir. Hasil metode Beam Discrete-Equi-Spaced Unshaded Line Array ditemukan bangkai kapal tenggelam.Kata Kunci: Side Scan Sonar, Beam Pattern Discrete-Equi-Spaced Unshaded Line Array, Incidence angle, Directivity pattern IDENTIFICATION OF SEABED PROFILE USING SIDE SCAN SONAR INSTRUMENT WITH PATTERN DISCRETE-EQUI-SPACED UNSHADED LINE ARRAY METHODRiau Islands is an island that has a variety of habitat objects, and forms of submarine structures that have a very high ocean dynamics, Punggur Sea is the sea

  11. Model-driven and software product line engineering

    CERN Document Server

    Royer, Jean-Claude

    2013-01-01

    Many approaches to creating Software Product Lines have emerged that are based on Model-Driven Engineering. This book introduces both Software Product Lines and Model-Driven Engineering, which have separate success stories in industry, and focuses on the practical combination of them. It describes the challenges and benefits of merging these two software development trends and provides the reader with a novel approach and practical mechanisms to improve software development productivity.The book is aimed at engineers and students who wish to understand and apply software product lines

  12. Theory and Circuit Model for Lossy Coaxial Transmission Line

    Energy Technology Data Exchange (ETDEWEB)

    Genoni, T. C.; Anderson, C. N.; Clark, R. E.; Gansz-Torres, J.; Rose, D. V.; Welch, Dale Robert

    2017-04-01

    The theory of signal propagation in lossy coaxial transmission lines is revisited and new approximate analytic formulas for the line impedance and attenuation are derived. The accuracy of these formulas from DC to 100 GHz is demonstrated by comparison to numerical solutions of the exact field equations. Based on this analysis, a new circuit model is described which accurately reproduces the line response over the entire frequency range. Circuit model calculations are in excellent agreement with the numerical and analytic results, and with finite-difference-time-domain simulations which resolve the skindepths of the conducting walls.

  13. Updating parameters of the chicken processing line model

    DEFF Research Database (Denmark)

    Kurowicka, Dorota; Nauta, Maarten; Jozwiak, Katarzyna

    2010-01-01

    A mathematical model of chicken processing that quantitatively describes the transmission of Campylobacter on chicken carcasses from slaughter to chicken meat product has been developed in Nauta et al. (2005). This model was quantified with expert judgment. Recent availability of data allows...... of the chicken processing line model....

  14. High-definition DNA methylation profiles from breast and ovarian carcinoma cell lines with differing doxorubicin resistance.

    Directory of Open Access Journals (Sweden)

    Michael Boettcher

    Full Text Available Acquired drug resistance represents a frequent obstacle which hampers efficient chemotherapy of cancers. The contribution of aberrant DNA methylation to the development of drug resistant tumor cells has gained increasing attention over the past decades. Hence, the objective of the presented study was to characterize DNA methylation changes which arise from treatment of tumor cells with the chemotherapeutic drug doxorubicin. DNA methylation levels from CpG islands (CGIs linked to twenty-eight genes, whose expression levels had previously been shown to contribute to resistance against DNA double strand break inducing drugs or tumor progression in different cancer types were analyzed. High-definition DNA methylation profiles which consisted of methylation levels from 800 CpG sites mapping to CGIs around the transcription start sites of the selected genes were determined. In order to investigate the influence of CGI methylation on the expression of associated genes, their mRNA levels were investigated via qRT-PCR. It was shown that the employed method is suitable for providing highly accurate methylation profiles, comparable to those obtained via clone sequencing, the gold standard for high-definition DNA methylation studies. In breast carcinoma cells with acquired resistance against the double strand break inducing drug doxorubicin, changes in methylation of specific cytosines from CGIs linked to thirteen genes were detected. Moreover, similarities between methylation profiles obtained from breast and ovarian carcinoma cell lines with acquired doxorubicin resistance were found. The expression levels of a subset of analyzed genes were shown to be linked to the methylation levels of the analyzed CGIs. Our results provide detailed DNA methylation information from two separate model systems for acquired doxorubicin resistance and suggest the occurrence of similar methylation changes in both systems upon exposure to the drug.

  15. DIGITAL GEOMETRIC MODELLING OF TEETH PROFILE BY USING CAD METHODOLOGY

    Directory of Open Access Journals (Sweden)

    Krzysztof TWARDOCH

    2014-03-01

    Full Text Available This article is devoted to the problem of properly defining the spatial model of tooth profile with CAD methodologies. Moved by the problem of the accuracy of the mapping defined curves describing the geometry of the teeth. Particular attention was paid to precise geometric modeling involute tooth profile, which has a significant influence on the process of identifying the mesh stiffness for tests performed on the dynamic phenomena occurring in the gear transmission systems conducted using dynamic models

  16. Rapid line-profile variability of H-alpha and H-beta in the A-type shell star HD 163296

    Science.gov (United States)

    Pogodin, M. A.

    1994-02-01

    The results of the H-alpha and H-beta line profile investigation of an A0-shell star HD 163296 are presented. 47 high-resolution CCD spectra (35 for H-alpha and 12 for H-beta) were obtained on July 15-20, 1991 and on July 24-27, 1992. A considerable profile variability is found on time scales from one hour to a few days. The main properties of the night-to-night variations are strong change in shape of the entire line profile with the exception of the primary PCyg-absorption which remains relatively constant both in strength and in position. Two types of extremely rapid variations (tau approximately equal hours) are discovered: (a) positional shift of sharp spectral bumps, and (b) monotonous flux variations of different parts of a profile during a night. A qualitative explanation in the framework of the model for an envelope containing an active non-stable region formed by an equatorially concentrated stellar wind and an external cool shell is proposed for the observed variability. Some reasons for the extremely rapid profile changes are considered.

  17. Gene expression profiles deciphering leaf senescence variation between early- and late-senescence cotton lines.

    Directory of Open Access Journals (Sweden)

    Xiangqiang Kong

    Full Text Available Leaf senescence varies greatly among genotypes of cotton (Gossypium hirsutium L, possibly due to the different expression of senescence-related genes. To determine genes involved in leaf senescence, we performed genome-wide transcriptional profiling of the main-stem leaves of an early- (K1 and a late-senescence (K2 cotton line at 110 day after planting (DAP using the Solexa technology. The profiling analysis indicated that 1132 genes were up-regulated and 455 genes down-regulated in K1 compared with K2 at 110 DAP. The Solexa data were highly consistent with, and thus were validated by those from real-time quantitative PCR (RT-PCR. Most of the genes related to photosynthesis, anabolism of carbohydrates and other biomolecules were down-regulated, but those for catabolism of proteins, nucleic acids, lipids and nutrient recycling were mostly up-regulated in K1 compared with K2. Fifty-one differently expressed hormone-related genes were identified, of which 5 ethylene, 3 brassinosteroid (BR, 5 JA, 18 auxin, 8 GA and 1 ABA related genes were up-regulated in K1 compared with K2, indicating that these hormone-related genes might play crucial roles in early senescence of K1 leaves. Many differently expressed transcription factor (TF genes were identified and 11 NAC and 8 WRKY TF genes were up-regulated in K1 compared with K2, suggesting that TF genes, especially NAC and WRKY genes were involved in early senescence of K1 leaves. Genotypic variation in leaf senescence was attributed to differently expressed genes, particularly hormone-related and TF genes.

  18. Modelling lightning caused transmission line outages in Alberta

    Energy Technology Data Exchange (ETDEWEB)

    Wu, M.; Shen, S.S.P. [Alberta Univ., Edmonton, AB (Canada). Dept. of Mathematical and Statistical Sciences; Koval, D.O. [Alberta Univ., Edmonton, AB (Canada). Dept. of Electrical Engineering

    2005-07-01

    The characteristics of lightning and the relationship between lightning and transmission line outages is not fully understood by utility planners. This study used 20 year data sets of lightning events to investigate the spatial and temporal patterns of lightning in Alberta. Studies of geographical and temporal characteristics of lightning caused transmission line outages for several voltage level transmission lines were also examined. A lasso regression variable selection procedure and Cp criterion were used to model the duration of the lightning-caused transmission line outages as a function of weather and lightning patterns. The province was divided into 110 by 110 grids, and lightning variables were calculated for each cell. All the lightning variables for each cell were then averaged based on their areas. The overall cloud-ground lightning flashes 20-year mean frequency and the physical locations of power transmission lines were then plotted. Estimated probability density functions of the duration of lightning caused transmission line outages were classified by their voltage levels. The study showed that the characteristics of the lightning caused outages were different for different voltage levels of the transmission lines. Results suggested that the findings will have a significant impact on the accuracy of reliability methodologies that use the average duration of transmission line outages in their calculations. It was concluded that the new methodology can be applied to any transmission line system operating in a unique geographical environmental area. 11 refs., 3 tabs., 5 figs.

  19. Measurements of Spatial Line Emission Profiles in the Main Scrape-Off Layer of the DIII-D Tokamak

    Energy Technology Data Exchange (ETDEWEB)

    Groth, M; Ellis, R; Brooks, N; Fenstermacher, M; Lasnier, C; Meyer, W; Moller, J

    2009-06-05

    A video camera system is described that measures the spatial distribution of visible line emission emitted from the main scrape-off layer (SOL) of plasmas in the DIII-D tokamak. A wide-angle lens installed on an equatorial port and an in-vessel mirror which intercepts part of the lens view provide simultaneous tangential views of the SOL on the low-field and high-field sides of the plasma's equatorial plane. Tomographic reconstruction techniques are used to calculate the 2-D poloidal profiles from the raw data, and 1-D poloidal profiles simulating chordal views of other optical diagnostics from the 2-D profiles. The 2-D profiles can be compared with SOL plasma simulations; the 1-D profiles with measurements from spectroscopic diagnostics. Sample results are presented which elucidate carbon transport in plasmas with toroidally uniform injection of methane and argon transport in disruption mitigation experiments with massive gas jet injection.

  20. Authentication of newly established human esophageal squamous cell carcinoma cell line (YM-1) using short tandem repeat (STR) profiling method.

    Science.gov (United States)

    Ayyoob, Khosravi; Masoud, Khoshnia; Vahideh, Kazeminejad; Jahanbakhsh, Asadi

    2016-03-01

    Cross-contamination during or early after establishment of a new cell line could result in the worldwide spread of a misidentified cell line. Therefore, newly established cell lines need to be authenticated by a reference standard method. This study was conducted to investigate the authenticity of a newly established epithelial cell line of human esophageal squamous cell carcinoma (ESCC) called YM-1 using short tandem repeat (STR) DNA profiling method. Primary human ESCC epithelial cells were cultured from the fresh tumor tissue of an adult female patient. Growth characteristics and epithelial originality of YM-1 cells were studied. Genomic DNA was isolated from YM-1 cells harvested at passage 22 and ESCC donor tumor sample on two different days to prevent probable DNA contamination. STR profiling was performed using AmpFℓSTR® Identifiler® Plus PCR Amplification Kit. To address whether YM-1 cells undergo genetic alteration as the passage number increases, STR profiling was performed again on harvested cells at passage 51. YM-1 cells grew as a monolayer with a population doubling time of 40.66 h. Epithelial originality of YM-1 cells was confirmed using ICC/IF staining of cytokeratins AE1/AE3. The STR profile of the ESCC donor tumor sample was the same with YM-1 cells at passage 22. However, STR profile of the donor tumor sample showed an off-ladder (OL) allele in their D7S820 locus. Also, re-profiling of YM-1 cells at passage 51 showed a loss of heterozygosity (LOH) at D18S51 locus. This suggests that long-term culture of cell lines may alter their DNA profile. Comparison of the DNA fingerprinting results in DSMZ, and ATCC STR profiling databases confirmed unique identity of YM-1 cell line. This study provides an easy, fast, and reliable procedure for authentication of newly established cell lines, which helps in preventing the spread of misidentified cells and improving the reproducibility and validity of experiments, consequently.

  1. Line-Shape Code Comparison through Modeling and Fitting of Experimental Spectra of the C ii 723-nm Line Emitted by the Ablation Cloud of a Carbon Pellet

    Directory of Open Access Journals (Sweden)

    Mohammed Koubiti

    2014-07-01

    Full Text Available Various codes of line-shape modeling are compared to each other through the profile of the C ii 723-nm line for typical plasma conditions encountered in the ablation clouds of carbon pellets, injected in magnetic fusion devices. Calculations were performed for a single electron density of 1017 cm−3 and two plasma temperatures (T = 2 and 4 eV. Ion and electron temperatures were assumed to be equal (Te = Ti = T. The magnetic field, B, was set equal to either to zero or 4 T. Comparisons between the line-shape modeling codes and two experimental spectra of the C ii 723-nm line, measured perpendicularly to the B-field in the Large Helical Device (LHD using linear polarizers, are also discussed.

  2. UWB channel modeling for indoor line-of-sight environment

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    SV/IEEE 802.15.3a model has been the standard model for Ultra-wide bandwidth (UWB) indoor non-line-of-sight (NLOS) wireless propagation, but for line-of-sight (LOS) case, it is not well defined. In this paper, a new statistical distribution model exclusively used for LOS environment is proposed based on investigation of the experimental data. By reducing the number of the visible random arriving clusters, the model itself and the parameters estimating of the corresponding model are simplified in comparison with SV/IEEE 802.15.3a model. The simulation result indicates that the proposed model is more accurate in modeling smallscale LOS environment than SV/IEEE 802.15.3a model when considering cumulative distribution functions(CDFs) for the three key channel impulse response (CIR) statistics.

  3. Nebular Continuum and Line Emission in Stellar Population Synthesis Models

    CERN Document Server

    Byler, Nell; Conroy, Charlie; Johnson, Benjamin D

    2016-01-01

    Accounting for nebular emission when modeling galaxy spectral energy distributions (SEDs) is important, as both line and continuum emission can contribute significantly to the total observed flux. In this work, we present a new nebular emission model integrated within the Flexible Stellar Population Synthesis code that computes the total line and continuum emission for complex stellar populations using the photoionization code Cloudy. The self-consistent coupling of the nebular emission to the matched ionizing spectrum produces emission line intensities that correctly scale with the stellar population as a function of age and metallicity. This more complete model of galaxy SEDs will improve estimates of global gas properties derived with diagnostic diagrams, star formation rates based on H$\\alpha$, and stellar masses derived from NIR broadband photometry. Our models agree well with results from other photoionization models and are able to reproduce observed emission from H II regions and star-forming galaxies...

  4. Chromatic line-profile tomography to reveal exoplanetary atmospheres: application to HD 189733b

    CERN Document Server

    Borsa, Francesco; Poretti, Ennio

    2016-01-01

    Transmission spectroscopy can be used to constrain the properties of exoplanetary atmospheres. During a transit, the light blocked from the atmosphere of the planet leaves an imprint in the light coming from the star. This has been shown for many exoplanets with different techniques, with both photometry and spectroscopy. We aim at testing chromatic line-profile tomography as a new tool to investigate exoplanetary atmospheres. The signal imprinted on the cross-correlation function (CCF) by a planet transiting its star is dependent on the planet-to-star radius ratio. We want to verify if the precision reachable on the CCF obtained from a subset of the spectral orders of the HARPS spectrograph is enough to discriminate the radius of a planet at different wavelengths. Methods. We analyze HARPS archival data of three transits of HD 189733b. We divide the HARPS spectral range in 7 broadbands, calculating for each band the ratio between the area of the out-of-transit CCF and the area of the signal imprinted by the ...

  5. Expression profiling of colon cancer cell lines and colon biopsies: Towards a screening system for potential cancer-preventive compounds

    NARCIS (Netherlands)

    Erk, van M.J.; Krul, C.A.M.; Caldenhoven, E.; Stierum, R.H.; Peters, W.H.; Woutersen, R.A.; Ommen, van B.

    2005-01-01

    Interest in mechanisms of colon cancer prevention by food compounds is strong and research in this area is often performed with cultured colon cancer cells. In order to assess utility for screening of potential cancer-preventive (food) compounds, expression profiles of 14 human cell lines derived

  6. Expression profiling of colon cancer cell lines and colon biopsies: towards a screening system for potential cancer-preventive compounds.

    NARCIS (Netherlands)

    Erk, M.J. van; Krul, C.A.; Caldenhoven, E.; Stierum, R.H.; Peters, W.H.M.; Woutersen, R.A.; Ommen, B.

    2005-01-01

    Interest in mechanisms of colon cancer prevention by food compounds is strong and research in this area is often performed with cultured colon cancer cells. In order to assess utility for screening of potential cancer-preventive (food) compounds, expression profiles of 14 human cell lines derived

  7. Transcriptomic profile of two canine mammary cancer cell lines with different proliferative and anti-apoptotic potential

    NARCIS (Netherlands)

    Krol, M.; Skierski, J.; Rao, N.A.; Hellmen, E.; Mol, J.A.; Motyl, T.

    2009-01-01

    J Physiol Pharmacol. 2009 May;60 Suppl 1:95-106. Transcriptomic profile of two canine mammary cancer cell lines with different proliferative and anti-apoptotic potential. Krol M, Pawlowski KM, Skierski J, Rao NA, Hellmen E, Mol JA, Motyl T. Department of Physiological Sciences, Faculty of Veterinary

  8. Expression profiling of colon cancer cell lines and colon biopsies: Towards a screening system for potential cancer-preventive compounds

    NARCIS (Netherlands)

    Erk, van M.J.; Krul, C.A.M.; Caldenhoven, E.; Stierum, R.H.; Peters, W.H.; Woutersen, R.A.; Ommen, van B.

    2005-01-01

    Interest in mechanisms of colon cancer prevention by food compounds is strong and research in this area is often performed with cultured colon cancer cells. In order to assess utility for screening of potential cancer-preventive (food) compounds, expression profiles of 14 human cell lines derived fr

  9. Expression profiling of colon cancer cell lines and colon biopsies: towards a screening system for potential cancer-preventive compounds.

    NARCIS (Netherlands)

    Erk, M.J. van; Krul, C.A.; Caldenhoven, E.; Stierum, R.H.; Peters, W.H.M.; Woutersen, R.A.; Ommen, B.

    2005-01-01

    Interest in mechanisms of colon cancer prevention by food compounds is strong and research in this area is often performed with cultured colon cancer cells. In order to assess utility for screening of potential cancer-preventive (food) compounds, expression profiles of 14 human cell lines derived fr

  10. Nebular Continuum and Line Emission in Stellar Population Synthesis Models

    Science.gov (United States)

    Byler, Nell; Dalcanton, Julianne J.; Conroy, Charlie; Johnson, Benjamin D.

    2017-05-01

    Accounting for nebular emission when modeling galaxy spectral energy distributions (SEDs) is important, as both line and continuum emissions can contribute significantly to the total observed flux. In this work, we present a new nebular emission model integrated within the Flexible Stellar Population Synthesis code that computes the line and continuum emission for complex stellar populations using the photoionization code Cloudy. The self-consistent coupling of the nebular emission to the matched ionizing spectrum produces emission line intensities that correctly scale with the stellar population as a function of age and metallicity. This more complete model of galaxy SEDs will improve estimates of global gas properties derived with diagnostic diagrams, star formation rates based on Hα, and physical properties derived from broadband photometry. Our models agree well with results from other photoionization models and are able to reproduce observed emission from H ii regions and star-forming galaxies. Our models show improved agreement with the observed H ii regions in the Ne iii/O ii plane and show satisfactory agreement with He ii emission from z = 2 galaxies, when including rotating stellar models. Models including post-asymptotic giant branch stars are able to reproduce line ratios consistent with low-ionization emission regions. The models are integrated into current versions of FSPS and include self-consistent nebular emission predictions for MIST and Padova+Geneva evolutionary tracks.

  11. Multikanban model for disassembly line with demand fluctuation

    Science.gov (United States)

    Udomsawat, Gun; Gupta, Surendra M.; Al-Turki, Yousef A. Y.

    2004-02-01

    In recent years, the continuous growth in consumer waste and dwindling natural resources has seriously threatened the environment. Realizing this, several countries have passed regulations that force manufacturers not only to manufacture environmentally conscious products, but also to take back their used products from consumers so that the components and materials recovered from the products may be reused and/or recycled. Disassembly plays an important role in product recovery. A disassembly line is perhaps the most suitable setting for disassembly of products in large quantities. Because a disassembly line has a tendency to generate excessive inventory, employing a kanban system can reduce the inventory level and let the system run more efficiently. A disassembly line is quite different from an assembly line. For example, not only can the demand arrive at the last station, it can also arrive at any of the other stations in the system. The demand for a component on the disassembly line could fluctuate widely. In fact, there are many other complicating matters that need to be considered to implement the concept of kanbans in such an environment. In this paper, we discuss the complications that are unique to a disassembly line. We discuss the complications in utilizing the conventional production control mechanisms in a disassembly line setting. We then show how to overcome them by implementing kanbans in a disassembly line setting with demand fluctuation and introduce the concept of multi-kanban mechanism. We demonstrate its effectiveness using a simulation model. An example is presented to illustrate the concept.

  12. Identification of differential gene expression profiles of radioresistant lung cancer cell line established by fractionated ionizing radiation in vitro

    Institute of Scientific and Technical Information of China (English)

    XU Qing-yong; GAO Yuan; LIU Yan; YANG Wei-zhi; XU Xiang-ying

    2008-01-01

    Background Radiotherapy plays a critical role in the management of non-small cell lung cancer (NSCLC). This study was conducted to identify gene expression profiles of acquired radioresistant NSCLC cell line established by fractionated ionizing radiation (FIR) by cDNA microarray.Methods The human lung adenocarcinoma cell line Anip973 was treated with high energy X-ray to receive 60 Gy in 4 Gy fractions. The radiosensitivity of Anip973R and its parental line were measured by clonogenic assay. Gene expression profiles of Anip973R and its parental line were analyzed using cDNA microarray consisting of 21 522 human genes.Identified partly different expressive genes were validated by quantitative reverse transcription-polymerase chain reaction (Q-RT-PCR).Results Fifty-nine upregulated and 43 downregulated genes were identified to radio-resistant Anip973R. Up-regulated genes were associated with DNA damage repair (DDB2), extracellular matrix (LOX), cell adhesion (CDH2), and apoptosis (CRYAB). Down-regulated genes were associated with angiogenesis (GBP-1), immune response (CD83), and calcium signaling pathway (TNNC1). Subsequent validation of selected eleven genes (CD24, DDB2, IGFBP3, LOX,CDH2, CRYAB, PROCR, ANXA1 DCN, GBP-1 and CD83) by Q-RT-PCR was consistent with microarray analysis.Conclusions Fractionated ionizing radiation can lead to the development of radiation resistance. Altered gene profiles of radioresistant cell line may provide new insights into mechanisms underlying clinical radioresistance for NSCLC.

  13. Analytical Model for High Impedance Fault Analysis in Transmission Lines

    Directory of Open Access Journals (Sweden)

    S. Maximov

    2014-01-01

    Full Text Available A high impedance fault (HIF normally occurs when an overhead power line physically breaks and falls to the ground. Such faults are difficult to detect because they often draw small currents which cannot be detected by conventional overcurrent protection. Furthermore, an electric arc accompanies HIFs, resulting in fire hazard, damage to electrical devices, and risk with human life. This paper presents an analytical model to analyze the interaction between the electric arc associated to HIFs and a transmission line. A joint analytical solution to the wave equation for a transmission line and a nonlinear equation for the arc model is presented. The analytical model is validated by means of comparisons between measured and calculated results. Several cases of study are presented which support the foundation and accuracy of the proposed model.

  14. Ideal Coulomb Plasma Approximation in Line Shape Models: Problematic Issues

    Directory of Open Access Journals (Sweden)

    Joel Rosato

    2014-06-01

    Full Text Available In weakly coupled plasmas, it is common to describe the microfield using a Debye model. We examine here an “artificial” ideal one-component plasma with an infinite Debye length, which has been used for the test of line shape codes. We show that the infinite Debye length assumption can lead to a misinterpretation of numerical simulations results, in particular regarding the convergence of calculations. Our discussion is done within an analytical collision operator model developed for hydrogen line shapes in near-impact regimes. When properly employed, this model can serve as a reference for testing the convergence of simulations.

  15. Mooring Model Experiment and Mooring Line Force Calculation

    Institute of Scientific and Technical Information of China (English)

    向溢; 谭家华; 杨建民; 张承懿

    2001-01-01

    Mooring model experiment and mooring line tension determination are of significance to the design of mooring systems and berthing structures. This paper mainly involves: (a) description and analysis of a mooring model experiment;(b) derivation of static equilibrium equations for a moored ship subjected to wind, current and waves; (c) solution of mo.oring equations with the Monte Carlo method; (d) qualitative analysis of effects of pier piles on mooring line forces. Special emphasis is placed on the derivation ofstatic equilibrium equations, solution method and the mooring model experiment.

  16. Smart Grid Network Transmission Line RLC Modelling Using Random Power Line Synthesis Scheme

    Directory of Open Access Journals (Sweden)

    Ezennaya S.O

    2013-07-01

    Full Text Available This work proposes Random Power line Synthesis (RPLS as a quicker computational approach to solving RLC parameters of a modern smart grid transmission network. Since modern grid systems provide a holistic perspective of modern grid development, it is obvious that a transmission network that is ageing cannot serve the expanded load demand. The need to revoltionalize the traditional transmission model while exploiting basic electrical theories and principles in Smart Grid (SG architecture necessitated this paper. This work seeks to address the RLC parameter modelling for SG template to provision dynamic power in Nigerian context. Other schemes of transmission RLC modelling were studied as well as outlining their limitations. Consequently, we then proposed a fuzzy smart grid framework for RLC computation and developed a proposed SG overhead transmission line from its conductor characteristics and tower geometry considering the RLC parameters of the conductor while applying RPLS to generate the parameter metrics.

  17. Rigorous theoretical derivation of lumped models to transmission line systems

    Institute of Scientific and Technical Information of China (English)

    Zhao Jixiang

    2012-01-01

    By virtue of the negative electric parameter concept,i.e.negative lumped resistance,inductance,conductance and capacitance (N-RLGC),the lumped equivalent models of transmission line systems,including the circuit model,two-port π-network and T-network,are given.We start from the N-segment-ladder-like equivalent networks composed distributed parameters,and achieve the input impedance in the form of a continued fraction.Utilizing the continued fraction theory,the expressions of input impedance are obtained under three kinds of extreme cases,i.e.the load impedances are equal to zero,infinity and characteristic impedance,respectively.When the number of segment N is limited to infinity,they are transformed to lumped elements.Comparison between the distributed model and lumped model of transmission lines,the expression of tanh yd,which is the key term in the transmission line equations,are obtained by RLGC,furthermore,according to input admittance,admittance matrix and ABCD matrix of transmission lines,the lumped equivalent circuit models,π-networks and T-networks have been given.The models are verified in the frequency and time domain,respectively,showing that the models are accurate and efficient.

  18. Verhulst and stochastic models for comparing mechanisms of MAb productivity in six CHO cell lines.

    Science.gov (United States)

    Shirsat, Nishikant; Avesh, Mohd; English, Niall J; Glennon, Brian; Al-Rubeai, Mohamed

    2016-08-01

    The present study validates previously published methodologies-stochastic and Verhulst-for modelling the growth and MAb productivity of six CHO cell lines grown in batch cultures. Cytometric and biochemical data were used to model growth and productivity. The stochastic explanatory models were developed to improve our understanding of the underlying mechanisms of growth and productivity, whereas the Verhulst mechanistic models were developed for their predictability. The parameters of the two sets of models were compared for their biological significance. The stochastic models, based on the cytometric data, indicated that the productivity mechanism is cell specific. However, as shown before, the modelling results indicated that G2 + ER indicate high productivity, while G1 + ER indicate low productivity, where G1 and G2 are the cell cycle phases and ER is Endoplasmic Reticulum. In all cell lines, growth proved to be inversely proportional to the cumulative G1 time (CG1T) for the G1 phase, whereas productivity was directly proportional to ER. Verhulst's rule, "the lower the intrinsic growth factor (r), the higher the growth (K)," did not hold for growth across all cell lines but held good for the cell lines with the same growth mechanism-i.e., r is cell specific. However, the Verhulst productivity rule, that productivity is inversely proportional to the intrinsic productivity factor (r x ), held well across all cell lines in spite of differences in their mechanisms for productivity-that is, r x is not cell specific. The productivity profile, as described by Verhulst's logistic model, is very similar to the Michaelis-Menten enzyme kinetic equation, suggesting that productivity is more likely enzymatic in nature. Comparison of the stochastic and Verhulst models indicated that CG1T in the cytometric data has the same significance as r, the intrinsic growth factor in the Verhulst models. The stochastic explanatory and the Verhulst logistic models can explain the

  19. Some Results On The Modelling Of TSS Manufacturing Lines

    Directory of Open Access Journals (Sweden)

    Viorel MÎNZU

    2000-12-01

    Full Text Available This paper deals with the modelling of a particular class of manufacturing lines, governed by a decentralised control strategy so that they balance themselves. Such lines are known as “bucket brigades” and also as “TSS lines”, after their first implementation, at Toyota, in the 70’s. A first study of their behaviour was based upon modelling as stochastic dynamic systems, which emphasised, in the frame of the so-called “Normative Model”, a sufficient condition for self-balancing, that means for autonomous functioning at a steady production rate (stationary behaviour. Under some particular conditions, a simulation analysis of TSS lines could be made on non-linear block diagrams, showing that the state trajectories are piecewise continuous in between occurrences of certain discrete events, which determine their discontinuity. TSS lines may therefore be modelled as hybrid dynamic systems, more specific, with autonomous switching and autonomous impulses (jumps. A stability analysis of such manufacturing lines is allowed by modelling them as hybrid dynamic systems with discontinuous motions.

  20. Aspect-Oriented Model-Driven Software Product Line Engineering

    Science.gov (United States)

    Groher, Iris; Voelter, Markus

    Software product line engineering aims to reduce development time, effort, cost, and complexity by taking advantage of the commonality within a portfolio of similar products. The effectiveness of a software product line approach directly depends on how well feature variability within the portfolio is implemented and managed throughout the development lifecycle, from early analysis through maintenance and evolution. This article presents an approach that facilitates variability implementation, management, and tracing by integrating model-driven and aspect-oriented software development. Features are separated in models and composed of aspect-oriented composition techniques on model level. Model transformations support the transition from problem to solution space models. Aspect-oriented techniques enable the explicit expression and modularization of variability on model, template, and code level. The presented concepts are illustrated with a case study of a home automation system.

  1. Space Telescope Imaging Spectrograph Observations of High-Velocity Interstellar Absorption-Line Profiles in the Carina Nebula

    Science.gov (United States)

    Walborn, Nolan R.; Danks, Anthony C.; Vieira, Gladys; Landsman, Wayne B.

    2002-06-01

    An atlas of ultraviolet interstellar absorption-line profiles toward four stars in the Carina Nebula is presented. The observations have been made with the Space Telescope Imaging Spectrograph on the Hubble Space Telescope, with a resolving power of 114,000. Low-ionization, high-ionization, and excited-state lines from a wide array of chemical species are included. Extensive measurements of radial velocities, velocity dispersions, and column densities of individual components in these profiles are also given. The unprecedented capabilities of STIS reveal many more velocity components than previously known; most of the high-velocity components in previous observations with the International Ultraviolet Explorer are now resolved into multiple subcomponents, and even higher velocities are seen. The great range of line strengths available permits the detection of the low-velocity components in the weakest lines, and progressively higher velocities in stronger lines (in which the low-velocity components become completely blended). The weak and high-ionization lines trace global structure in the H II region, while the strong low-ionization lines show intricate high-velocity structure that likely originates relatively near to the O stars observed. The extreme velocities found in the low-ionization lines toward these four stars are -388 and +127 km s-1, with 23-26 resolved components in each. Some components in different stars may be related, but many are different in each line of sight. A remarkably well-defined Routly-Spitzer effect is found in this region. Temporal variations toward one star observed twice have already been reported. These measurements will be used in subsequent astrophysical analyses to further constrain the origins of the phenomena. Based on observations with the NASA/ESA Hubble Space Telescope obtained at the Space Telescope Science Institute, which is operated by the Association of Universities for Research in Astronomy, Inc., under NASA contract

  2. The Stagger-grid: A grid of 3D stellar atmosphere models - V. Fe line shapes, shifts and asymmetries

    CERN Document Server

    Magic, Zazralt; Asplund, Martin

    2014-01-01

    We present a theoretical study of the effects and signatures of realistic velocity field and atmospheric inhomogeneities associated with convective motions at the surface of cool late-type stars on the emergent profiles of iron spectral lines for a large range in stellar parameters. We compute 3D spectral line flux profiles under the assumption of local thermodynamic equilibrium (LTE) by employing state-of-the-art, time-dependent, 3D, radiative-hydrodynamical atmosphere models from the Stagger-grid. A set of 35 real unblended, optical FeI and FeII lines of varying excitation potential are considered. Additionally, fictitious Fe i and Fe ii lines (5000A and 0, 2, 4 eV) are used to construct general curves of growth and enable comparison of line profiles with the same line strength to illustrate systematical trends stemming from the intrinsic structural differences among 3D model atmospheres with different stellar parameters. Theoretical line shifts and bisectors are derived to analyze the shapes, shifts, and a...

  3. A spine-sheath model for strong-line blazars

    OpenAIRE

    2015-01-01

    We have developed a quasi-analytical model for the production of radiation in strong-line blazars, assuming a spine-sheath jet structure. The model allows us to study how the spine and sheath spectral components depend on parameters describing the geometrical and physical structure of "the blazar zone". We show that typical broad-band spectra of strong-line blazars can be reproduced by assuming the magnetization parameter to be of order unity and reconnection to be the dominant dissipation me...

  4. Observations of Ha Line Profiles in Be Stars Using 45 cm Cassegrain Telescope at Arthur C Clarke Institute

    Science.gov (United States)

    Gunasekera, S.; Adassuriya, J.; Medagangoda, N. I.

    2008-12-01

    H-alpha line profiles of 13 Be starts (mv d6.9) were observed using 45 cm Cassegrain telescope at the Arthur C Clarke Institute, Sri Lanka during the period of August 2005 to March 2006. High resolution spectra of these Be stars were obtained using 1200 lines/mm reflective grating in first order with resolution R=λ/Δλ=76800 and linear spectral dispersion 0.31 Å per pixel at 6563 Å in order to find out line parameters such as equivalent width, full width at half-maxima, V/R ratios etc. A study of the correlations between different pairs of parameters was obtained and compared with previous analysis to see the behavior of circumstellar disk. We found a good correlation (0.8) between FWHM and v sin i and strong correlation (0.96) between the Ip/Ic and the equivalent width. The drastic changes of the V/R ratio in profiles HR5941 and HR6712 imply the circumstellar disk is more likely an elliptical shape and undergoes slow apsidal motion. The inclination angles (i) were estimated for each star using the theoretical vsin i values and assuming star rotates in 0.8Vc and are matched with the structure of the line profiles.

  5. A spine-sheath model for strong-line blazars

    Science.gov (United States)

    Sikora, Marek; Rutkowski, Mieszko; Begelman, Mitchell C.

    2016-04-01

    We have developed a quasi-analytical model for the production of radiation in strong-line blazars, assuming a spine-sheath jet structure. The model allows us to study how the spine and sheath spectral components depend on parameters describing the geometrical and physical structure of `the blazar zone'. We show that typical broad-band spectra of strong-line blazars can be reproduced by assuming the magnetization parameter to be of order unity and reconnection to be the dominant dissipation mechanism. Furthermore, we demonstrate that the spine-sheath model can explain why γ-ray variations are often observed to have much larger amplitudes than the corresponding optical variations. The model is also less demanding of jet power than one-zone models, and can reproduce the basic features of extreme γ-ray events.

  6. A spine-sheath model for strong-line blazars

    CERN Document Server

    Sikora, Marek; Begelman, Mitchell

    2015-01-01

    We have developed a quasi-analytical model for the production of radiation in strong-line blazars, assuming a spine-sheath jet structure. The model allows us to study how the spine and sheath spectral components depend on parameters describing the geometrical and physical structure of "the blazar zone". We show that typical broad-band spectra of strong-line blazars can be reproduced by assuming the magnetization parameter to be of order unity and reconnection to be the dominant dissipation mechanism. Furthermore, we demonstrate that the spine-sheath model can explain why gamma-ray variations are often observed to have much larger amplitudes than the corresponding optical variations. The model is also less demanding of jet power than one-zone models, and can reproduce the basic features of extreme gamma-ray events.

  7. Stellar model atmospheres with magnetic line blanketing. II. Introduction of polarized radiative transfer

    CERN Document Server

    Khan, S A

    2006-01-01

    The technique of model atmosphere calculation for magnetic Ap and Bp stars with polarized radiative transfer and magnetic line blanketing is presented. A grid of model atmospheres of A and B stars are computed. These calculations are based on direct treatment of the opacities due to the bound-bound transitions that ensures an accurate and detailed description of the line absorption and anomalous Zeeman splitting. The set of model atmospheres was calculated for the field strengths between 1 and 40 kG. The high-resolution energy distribution, photometric colors and the hydrogen Balmer line profiles are computed for magnetic stars with different metallicities and are compared to those of non-magnetic reference models and to the previous paper of this series. The results of modelling confirmed the main outcomes of the previous study: energy redistribution from UV to the visual region and flux depression at 5200A. However, we found that effects of enhanced line blanketing when transfer for polarized radiation take...

  8. Measuring and modeling suspended sediment concentration profiles in the surf zone

    Directory of Open Access Journals (Sweden)

    Ping Wang

    2012-10-01

    Full Text Available Time-averaged suspended sediment concentration profiles across the surf zone were measured in a large-scale three-dimensional movable bed laboratory facility (LSTF: Large-scale Sediment Transport Facility. Sediment suspension under two different types of breaking waves, spilling and plunging breakers, was investigated. The magnitudes and shapes of the concentration profiles varied substantially at different locations across the surf zone, reflecting the different intensities of breaking-induced turbulence. Sediment suspension at the energetic plunging breaker-line was much more active, resulting in nearly homogeneous concentration profiles throughout most of the water column, as compared to the reminder of the surf zone and at the spilling breaker-line. Four suspended sediment concentration models were examined based on the LSTF data, including the mixing turbulence length approach, segment eddy viscosity model, breaking-induced wave-energy dissipation approach, and a combined breaking and turbulence length model developed by this study. Neglecting the breaking-induced turbulence and subsequent sediment mixing, suspended sediment concentration models failed to predict the across-shore variations of the sediment suspension, especially at the plunging breaker-line. Wave-energy dissipation rate provided an accurate method for estimating the intensity of turbulence generated by wave breaking. By incorporating the breaking-induced turbulence, the combined breaking and turbulence length model reproduced the across-shore variation of sediment suspension in the surf zone. The combined model reproduced the measured time-averaged suspended sediment concentration profiles reasonably well across the surf zone.

  9. Development of a wear model for the wheel profile optimisation on railway vehicles

    Science.gov (United States)

    Ignesti, M.; Innocenti, A.; Marini, L.; Meli, E.; Rindi, A.

    2013-09-01

    The modelling and the reduction of wear due to wheel-rail interaction is a fundamental aspect in the railway field, mainly correlated to safety, maintenance interventions and costs. In this work, the authors present two innovative wheel profiles, specifically designed with the aim of improving the wear and stability behaviour of the standard ORE S1002 wheel profile matched with the UIC60 rail profile canted at 1/20 rad, which represents the wheel-rail combination adopted in the Italian railway line. The two wheel profiles, conventionally named CD1 and DR2, have been developed by the authors in collaboration with Trenitalia S.p.A. The CD1 profile has been designed with the purpose of spreading the contact points in the flange zone on a larger area in order to reduce wear phenomena and having a constant equivalent conicity for small lateral displacements of the wheelset with respect to the centred position in the track. The DR2 wheel profile is instead designed to guarantee the same kinematic characteristics of the matching formed by ORE S1002 wheel profile and UIC60 rail profile with laying angle α p equal to 1/40 rad, widely common in European railways and characterised by good performances in both wear and kinematic behaviour. The evolution of wheel profiles due to wear has been evaluated through a wear model developed and validated by the authors in previous works. The wear model comprises two mutually interactive units: a vehicle model for the dynamic simulations and a model for the wear assessment. The whole model is based on a discrete process: each discrete step consists in one dynamic simulation and one profile update by means of the wear model while, within the discrete step, the profiles are supposed to be constant. The choice of an appropriate step is crucial in terms of precision and computational effort: the particular strategy adopted in the current work has been chosen for its capacity in representing the nonlinear wear evolution and for the low

  10. APPLICATION OF THE MOMENT METHODS TO ANALYSIS OF X-RAY DIFFRACTION LINE PROFILE FOR PA1010-BMI SYSTEM

    Institute of Scientific and Technical Information of China (English)

    ZHANG Hongfang; YU Li; ZHANG Lihua; MO Zhishen; MU Zhongchen

    1995-01-01

    Pure X-ray diffraction profiles have been analysed for polyamide 1010 and PA1010-BMI system by means of multipeak fitting resolution of X-ray diffraction. The methods of variance and fourth moment have been applied to determine the particle size and strain values for the paracrystalline materials. The results indicated that both variance and fourth moment of X-ray diffraction line profile yielded approximately the same values of the particle size and the strain. The particle sizes of (100) reflection have been found to decrease with increasing BMI content, whereas the strain values increased.

  11. On the Interface Formation Model for Dynamic Triple Lines

    CERN Document Server

    Bothe, Dieter

    2015-01-01

    This paper revisits the theory of Y. Shikhmurzaev on forming interfaces as a continuum thermodynamical model for dynamic triple lines. We start with the derivation of the balances for mass, momentum, energy and entropy in a three-phase fluid system with full interfacial physics, including a brief review of the relevant transport theorems on interfaces and triple lines. Employing the entropy principle in the form given in [Bothe & Dreyer, Acta Mechanica, doi:10.1007/s00707-014-1275-1] but extended to this more general case, we arrive at the entropy production and perform a linear closure, except for a nonlinear closure for the sorption processes. Specialized to the isothermal case, we obtain a thermodynamically consistent mathematical model for dynamic triple lines and show that the total available energy is a strict Lyapunov function for this system.

  12. Transmission line matrix modelling of thermal injuries to skin.

    Science.gov (United States)

    Aliouat Bellia, S; Saidane, A; Hamou, A; Benzohra, M; Saiter, J M

    2008-08-01

    A numerical model based on the transmission line matrix method is presented for the quantitative prediction of skin burn resulting from exposure of a specific region of human skin surface to a high temperature heat source. Transient temperatures were numerically estimated by Pennes' bioheat equation, and the damage function denoting the extent of burn was calculated using the Arrhenius assumptions for protein damage rate. A two-dimensional transmission line matrix model was used to predict the effects of exposure time and structure thicknesses on the transient temperature distribution and damage extent. Compared with other numerical sources the transmission line matrix results revealed good agreement, suggesting that this method may be an effective tool for the thermal diagnostic of burns.

  13. The Family Problem: Hints from Heterotic Line Bundle Models

    CERN Document Server

    Constantin, Andrei; Mishra, Challenger

    2015-01-01

    Within the class of heterotic line bundle models, we argue that N=1 vacua which lead to a small number of low-energy chiral families are preferred. By imposing an upper limit on the volume of the internal manifold, as required in order to obtain finite values of the four-dimensional gauge couplings, and validity of the supergravity approximation we show that, for a given manifold, only a finite number of line bundle sums are consistent with supersymmetry. By explicitly scanning over this finite set of line bundle models on certain manifolds we show that, for a sufficiently small volume of the internal manifold, the family number distribution peaks at small values, consistent with three chiral families. The relation between the maximal number of families and the gauge coupling is discussed, which hints towards a possible explanation of the family problem.

  14. Modeling Profiles and Signatures of Enrichments

    Science.gov (United States)

    Ali, A.; Qualls, C.; Lucas, S. G.; Lombari, G.; Appenzeller, O.

    2014-12-01

    Anthropogenic and geochemical enrichment of soils and living matter have been well documented 1, 2, 3.Here we report on geochemical, anthropogenic and biological enrichments with heavy metals in Modern Peru and compared this to Modern and ancient data from New Mexico, USA. We established a signature derived from the quantities of 25 metals in various biological, fossil and soil materials. We also speculate that human adaptation to mercury toxicity may occur in remarkably short time spans during the Holocene. We found mercury concentrations in Modern pigeon feathers and llama wool from free foraging birds and animals in Albuquerque, NM, ranging from 0.006 to 0.019 mg/Kg of tissue. The values for Modern Peru ranged from 22.0 to 556 mg/Kg for the same tissues. We discovered, in 64 million-year-old fossilized plants from New Mexico (Paleocene Nacimiento Formation, San Juan Basin), a mercury concentration of 1.11 mg/Kg of fossil, whereas Modern plant material from the Rio Grande Basin in New Mexico contained no mercury. Profiling of metal content of these samples suggests that mercury is a proxy for anthropogenic rather than geochemical enrichment in the localities we examined. We found no overt signs of mercury toxicity in contemporaneous inhabitants of Huancavelica4, Peru; one of the ten most mercury-polluted places in the world and the mercury concentration in their hair is well below modern admissible levels. However, assessment of their annual scalp hair growth-rate showed marked reduction in growth (~ 5cm/yr) versus ~ 16cm/year for normal scalp hair from other continents4. This is consistent with a toxic effect of heavy metals on human metabolism and especially autonomic nervous system function in Huancavelica, Peru. Contemporaneous anthropogenic activities are known to increase heavy metal content in the biosphere with potentially toxic effects on humans. However, signs of human evolutionary adaptation to such toxins might already be evident in Peru4.

  15. Ice shelf flexures modeled with a 2-D elastic flow line model

    Directory of Open Access Journals (Sweden)

    Y. V. Konovalov

    2011-10-01

    Full Text Available Ice shelf flexures modeling was performed using a 2-D finite-difference elastic model, which takes into account sub-ice-shelf sea water flow. The sub-ice water flow was described by the wave equation for the sub-ice-shelf pressure perturbations (Holdsworth and Glynn, 1978. In the model ice shelf flexures result from variations in ocean pressure due to changes in prescribed sea levels. The numerical experiments were performed for a flow line down one of the fast flowing ice streams of the Academy of Sciences Ice Cap. The profile includes a part of the adjacent ice shelf. The numerical experiments were carried out for harmonic incoming pressure perturbations P' and the ice shelf flexures were obtained for a wide spectrum of the pressure perturbations frequencies, ranging from tidal periods down to periods of a few seconds (0.004..0.02 Hz. The amplitudes of the ice shelf deflections obtained by the model achieve a maxima at about T ≈ 165 s in concordance with previous investigations of the impact of waves on Antarctic ice shelves (Bromirski et al., 2010. The explanation of the effect is found in the solution of the corresponding eigenvalue problem revealing the existence of a resonance at these high frequencies.

  16. Observation and Modeling of Anomalous CN Polarization Profiles Produced by the Molecular Paschen-Back Effect in Sunspots

    Science.gov (United States)

    Asensio Ramos, A.; Trujillo Bueno, J.; Collados, M.

    2005-04-01

    We report novel spectropolarimetric observations of sunspots carried out with the Tenerife Infrared Polarimeter in a near-IR spectral region around 15410 Å, which is known to contain two groups of prominent OH lines that show circular polarization signals of opposite polarity. Surrounding these well-known OH lines, we have discovered the presence of CN lines of the Δv=1 band that show anomalous polarization profiles. Although the Stokes V signals of the OH lines are antisymmetric and of a sizable amplitude, the CN lines show almost negligible circular polarization. On the contrary, the linear polarization signals turn out to be much stronger in the CN lines than in the OH lines. Interestingly, these CN lines present striking antisymmetric linear polarization profiles, which we are able to explain and model via the Paschen-Back effect theory for diatomic molecules. The presence of such peculiar CN lines in the same spectral region of the OH lines may be useful to improve our empirical knowledge of solar magnetic fields via the simultaneous observation and modeling of the transverse and longitudinal Zeeman effects in two different molecular species.

  17. Simulation of X-ray diffraction-line broadening due to dislocations in a model composite material

    NARCIS (Netherlands)

    Bor, T.C.; Cleveringa, H.H.M.; Delhez, R.; Giessen, van der E.

    2001-01-01

    X-ray diffraction-line profiles of two-dimensional, plastically deformed model composite materials are calculated and analysed in detail. The composite consists of elastic reinforcements in a crystalline solid and is subjected to macroscopic shear. Slip occurs in the matrix only due to the collectiv

  18. Broadening of the Spectral Atomic Lines Analysis in High Density Argon Corona Plasma by Using Voigt Profile

    Science.gov (United States)

    Nur, M.; Bonifaci, N.; Denat, A.; Atrazhev, V. M.

    2015-06-01

    Studies of spectrum emission from high density argon plasma corona has been done. The analysis of the boardening of spectral atomic lines of Ar-I profile has been curried out by using an empirical approximation based on a Voigt profile. Full-width at half-maximum (FWHM) of the spectral-lines of 763.5 nm has been determined from atmospheric pressure until liquid state. The study liquid argon was curried out in a variation of temperature from K to 151.2 K and hydrostatics pressure from 2.1 MPa to 6.4 MPa. These pressure gives the densities N∞ (i.e. density very far from ionization zone) a variation from 1.08 1022 to 2.11 1022 cm-3. FWHM of Voigt approximation (Wv) of the line 763,5 nm of 'Ar I for: the emission lamp very low pressure (Wv = 0,160 nm) and our corona discharge at a pressure of MPa (Wv = 0,67 nm) and at a pressure of 9,5 MPa (Wv = 1,16 nm). In gas, corona plasma has been generated from 0.1 MPa to 9.5 MPa. We found that the broadening spectral line increase by increasing densities both for. the spectral-lines of 763.5 nm and 696.5 nm. We concluded that broadening of spectrum cause of Van der Waals force.

  19. Lifetime injury prevention: The sport profile model*

    African Journals Online (AJOL)

    2012-01-04

    Jan 4, 2012 ... develop models of understanding of injury risk at different life ... University of Brighton, Sussex Centre for Sport and Exercise ... of knee and hip osteoarthritis in former professional soccer players is ... equally to all situations for that sport. .... prevention and better treatment of injuries that limit physical activity.

  20. Traceability for Model Driven, Software Product Line Engineering

    NARCIS (Netherlands)

    Anquetil, N.; Grammel, B.; Galvao Lourenco da Silva, I.; Noppen, J.A.R.; Shakil Khan, S.; Arboleda, H.; Rashid, A.; Garcia, A.

    2008-01-01

    Traceability is an important challenge for software organizations. This is true for traditional software development and even more so in new approaches that introduce more variety of artefacts such as Model Driven development or Software Product Lines. In this paper we look at some aspect of the int

  1. Selection between Linear Factor Models and Latent Profile Models Using Conditional Covariances

    Science.gov (United States)

    Halpin, Peter F.; Maraun, Michael D.

    2010-01-01

    A method for selecting between K-dimensional linear factor models and (K + 1)-class latent profile models is proposed. In particular, it is shown that the conditional covariances of observed variables are constant under factor models but nonlinear functions of the conditioning variable under latent profile models. The performance of a convenient…

  2. Selection between Linear Factor Models and Latent Profile Models Using Conditional Covariances

    Science.gov (United States)

    Halpin, Peter F.; Maraun, Michael D.

    2010-01-01

    A method for selecting between K-dimensional linear factor models and (K + 1)-class latent profile models is proposed. In particular, it is shown that the conditional covariances of observed variables are constant under factor models but nonlinear functions of the conditioning variable under latent profile models. The performance of a convenient…

  3. Tenure profiles and effficient separation in a stochastic productivity model

    NARCIS (Netherlands)

    Buhai, S.; Teulings, C.N.

    2006-01-01

    This paper provides a new way of analyzing tenure profiles in wages, by modelling simultaneously the evolution of wages and the distribution of tenures. We develop a theoretical model based on efficient bargaining, where both log outside wage and log wage in the current job follow a random walk, as

  4. Numerical Modelling of the Segmental Lining of Underground Structures

    Directory of Open Access Journals (Sweden)

    Akbar Salemi

    2014-12-01

    Full Text Available There are several methods for analysing the behaviour of underground structures under different loading conditions. Most of these methods have many simplifications; therefore, in some cases, the results are too conservative and a very high safety factor, usually of more than 2 is needed. On the other hand, for stability analysis and the designing of support systems, these methods consider segmental lining and its joints as a uniform lining or a lining with pin connections. In this study, numerical modelling of the segmental lining of a tunnel was analysed using a sensitivity analysis of the static modelling. The numerical results were obtained by using a finite difference method (FLAC2D. Using this form of analysis, a new simple methodology was introduced so that more reliable results can be obtained. By comparing the frame analysis results obtained by the SAP2000 software with those obtained by the proposed method, it was concluded that the suggested method can be used as a simple and reasonable approach for the segmental lining of underground structures such as tunnels.

  5. An exploratory numerical model of rocky shore profile evolution

    Science.gov (United States)

    Matsumoto, Hironori; Dickson, Mark E.; Kench, Paul S.

    2016-09-01

    Rocky shores occur along much of the world's coastline and include a wide range of coastal morphologies, such as intertidal shore platforms. Considerable research effort has been placed on trying to understand developmental processes on rocky shores, but progress has been forestalled because these landscapes develop slowly and preserve little evidence of evolution through time. This paper presents a new exploratory numerical model developed to study long-term shore profile evolution on rock coasts. The model purposely considers only a limited number of processes, each represented in a highly abstracted way. Despite these simplifications, the model exhibits a large range of emergent shore profile shapes. This behavior is enabled both by broader spatial representation of the driving erosion forces and the flexibility provided by a grid discretization scheme. Initial model testing shows the development of varied rocky profile geometries, ranging from steep plunging cliffs, cliffs with narrow benches, and cliffs with a variety of shore platform shapes. Most of the model geometries are similar to those observed in the field, and model behavior is robust and internally consistent across a relatively large parameter space. This paper provides a detailed description of the new model and its subsequent testing. Emphasis is placed on comparison of model results with published field observations in which morphometric relationships are described between shore platform gradient and tidal range, and platform elevation and platform width. The model adequately simulates these morphometric relationships, while retaining its ability to simulate a wide range of profile shapes. The simplicity of process representations, and the limited number of processes implemented, means that model outputs can be interpreted reasonably easily. Hence, an opportunity is now provided, following the testing described in this paper, to use the model to systematically investigate the broader controlling

  6. PEMBUATAN MODEL PROFIL MAHASISWA FAKULTAS TEKNIK UNIVERSITAS PANCASILA

    Directory of Open Access Journals (Sweden)

    Paryudi Paryudi

    2009-01-01

    Full Text Available Promotion is a must for a university to get students. With the innocence of the promotion team about the existing student profile, it will cause the team does not know which segment should be the promotion target. The consequence is that the promotion cost will be higher. In order to have a better promotion, we can use direct marketing method. In this method, a profile model of the existing students must be first created. With this profile model, promotion team can focus the promotion only to candidate student match with the model. The advantages of this method are: promotion cost can be reduced, response rate increase, and profit also increase. In order to create a model in direct marketing, we need previous promotion data. Since previous promotion data is not available, two methods in creating preliminary models are proposed. Next, the preliminary models will be tested using data mining software available in the market. Model with minimal accuracy of 75% will be chosen. If there are more than one model with minimal accuracy of 75%, then model with the highest accuracy will be chosen. Abstract in Bahasa Indonesia: Promosi merupakan suatu keharusan bagi sebuah universitas untuk mendapatkan mahasiswa. Dengan masih awamnya tim promosi terhadap profil mahasiswa yang sudah ada, maka tim promosi melakukan promosi tanpa melihat segmen pasar yang harus dituju. Konsekuensinya adalah biaya promosi menjadi lebih mahal. Untuk melakukan promosi dengan lebih baik, dapat menggunakan metode direct marketing. Pada metode ini, model profil dari mahasiswa yang sudah ada harus dibuat terlebih dulu. Dengan menggunakan model profil ini, tim promosi dapat memfokuskan promosi hanya pada calon-calon mahasiswa yang sesuai dengan model. Keuntungan dari metode promosi ini adalah biaya promosi dapat dikurangi, tingkat respon meningkat, dan keuntungan juga meningkat. Untuk membuat model pada direct marketing dibutuhkan data dari promosi sebelumnya. Karena data promosi

  7. Silhouette and spectral line profiles in the special modification of the Kerr black hole geometry generated by quintessential fields

    CERN Document Server

    Schee, Jan

    2016-01-01

    We study optical effects in quintessential Kerr black hole spacetimes corresponding to the limiting case of the equation-of-state parameter $\\omega_{q}=-1/3$ of the quintessence. In dependence on the dimensionless quintessential field parameter $c$, we determine the black hole silhouette and the spectral line profiles of Keplerian disks generated in this special quintessential Kerr geometry, representing an extension of the general modifications of the Kerr geometry introduced recently by Ghasemi-Nodehi and Bambi \\cite{Gha-Bam:2016:EPJC:}. We demonstrate that due to the influence of the parameter $c$, the silhouette is almost homogeneously enlarged, and the spectral line profiles are redshifted with almost conserved shape.

  8. Silhouette and spectral line profiles in the special modification of the Kerr black hole geometry generated by quintessential fields

    Energy Technology Data Exchange (ETDEWEB)

    Schee, Jan; Stuchlik, Zdenek [Silesian University in Opava, Faculty of Philosophy and Science, Institute of Physics and Research Centre for Theoretical Physics and Astrophysics, Opava (Czech Republic)

    2016-11-15

    We study optical effects in quintessential Kerr black hole spacetimes corresponding to the limiting case of the equation-of-state parameter ω{sub q} = -1/3 of the quintessence. In dependence on the dimensionless quintessential field parameter c, we determine the black hole silhouette and the spectral line profiles of Keplerian disks generated in this special quintessential Kerr geometry, representing an extension of the general modifications of the Kerr geometry introduced recently by Ghasemi-Nodehi and Bambi (Eur. Phys. J. C 56:290, 2016). We demonstrate that due to the influence of the parameter c, the silhouette is almost homogeneously enlarged, and the spectral line profiles are redshifted with almost conserved shape. (orig.)

  9. Iris si iv line profiles: An indication for the plasmoid instability during small-scale magnetic reconnection on the sun

    CERN Document Server

    Innes, Davina; Huang, YiMin; Bhattacharjee, Amitava

    2015-01-01

    Our understanding of the process of fast reconnection has undergone a dramatic change in the last 10 years driven, in part, by the availability of high-resolution numerical simulations that have consistently demonstrated the break-up of current sheets into magnetic islands, with reconnection rates that become independent of Lundquist number, challenging the belief that fast magnetic reconnection in flares proceeds via the Petschek mechanism that invokes pairs of slow-mode shocks connected to a compact diffusion region. The reconnection sites are too small to be resolved with images but these reconnection mechanisms, Petschek and the plasmoid instability, have reconnection sites with very different density and velocity structures and so can be distinguished by high-resolution line-profiles observations. Using IRIS spectroscopic observations we obtain a survey of typical line profiles produced by small-scale events thought to be reconnection sites on the Sun. Slit-jaw images are used to investigate the plasma h...

  10. Comparative assessment of maize lines produced by different breeding methods using both microbiological and metabolic profiling tools

    CSIR Research Space (South Africa)

    Barros, E

    2006-02-01

    Full Text Available , F; NMR-based metabolomic study of transgenic maize. Phytochemistry (2004), 65: 3187-3198 2. Rabie, CJ; Lübben, A; Marais, GJ; and Jansen van Vuuren, H (1997) Enumeration of fungi in barley. International Journal of Food Microbiology, 35, 117... Biosciences includes the evaluation of different South African and European maize lines, using microbiological and mycotoxin analysis, as well as metabolic profiling through NMR (Nuclear Magnetic Resonance) analysis. This study shows the results obtained...

  11. A Low-Profile Dual-Band Micro-strip Antenna Having Open-Circuited Strip-line-Stub

    OpenAIRE

    長谷川, 孝明; 羽石, 操

    1986-01-01

    Copyright notice. c1986 IEICE All rights reserved. "A Low-Profile Dual-Band Micro-strip Antenna Having Open-Circuited Strip-line-Stub"Misao HANEISHI, Hidekazu SUGA, Takaaki HASEGAWA.The Transactions of the Institute of Electronics and Communication Engineers of Japan. Section E, English, 1986. Vol. E69 No.11 pp. 1165-1166 許諾No.07RB0055.

  12. 2D-model of oxygen emissions lines for Europa

    Science.gov (United States)

    Cessateur, Gaël; Barthelemy, Mathieu; Lilensten, Jean; Rubin, Martin; Maggiolo, Romain; De Keyser, Johan

    2017-04-01

    The Jovian moon Europa is an interesting case study as an archetype for icy satellites, and will be one of the primary targets of the ESA JUICE mission which should be launched in 2022. Hosting a thin neutral gas atmosphere mainly composed of O2 and H2O, Europa can be studied by its airglow and dayglow emissions. A 1D photochemistry model has first been developed to assess the impact of the solar UV flux on the visible emission, such as the red and green oxygen lines (Cessateur et al. 2016). For limb polar viewing, red line emissions can reach a few hundreds of Rayleigh close to the surface. The impact of the precipitating electrons has also been studied. The density and temperature of the electrons are first derived from the multifluid MHD model from Rubin et al. (2015). A 2D emission model has thus been developed to estimate the airglow emissions. When electrons are the major source of the visible emissions, the solar UV flux can be responsible for up to 15% of those emissions for some specific line of sight. Oxygen emission lines in the UV have also been considered, such as 130.5 and 135.6 nm. For the latter, we did estimate some significant line emissions reaching 700 Rayleigh for a polar limb viewing angle close to the surface. Oxygen emission lines are significant (higher than 10 R) for altitudes lower than 100 km for all lines, except for the red line emissions where emissions are still above 10 R up to 200 km from the surface. A sensitivity study has also been performed in order to assess the impact of the uncertainties relative to the dissociative-excitation cross sections. Cessateur G, Barthelemy M & Peinke I. Photochemistry-emission coupled model for Europa and Ganymede. J. Space Weather Space Clim., 6, A17, 2016 Rubin, M., et al. Self-consistent multifluid MHD simulations of Europa's exospheric interaction with Jupiter's magnetosphere, J. Geophys. Res. Space Physics, 120, 3503-3524, 2015

  13. Gene-specific DNA methylation profiles and LINE-1 hypomethylation are associated with myocardial infarction risk

    NARCIS (Netherlands)

    Guarrera, Simonetta; Fiorito, Giovanni; Onland-Moret, N Charlotte; Russo, Alessia; Agnoli, Claudia; Allione, Alessandra; Di Gaetano, Cornelia; Mattiello, Amalia; Ricceri, Fulvio; Chiodini, Paolo; Polidoro, Silvia; Frasca, Graziella; Verschuren, Monique W M; Boer, Jolanda M A; Iacoviello, Licia; van der Schouw, Yvonne T; Tumino, Rosario; Vineis, Paolo; Krogh, Vittorio; Panico, Salvatore; Sacerdote, Carlotta; Matullo, Giuseppe

    2015-01-01

    BACKGROUND: DNA methylation profiles are responsive to environmental stimuli and metabolic shifts. This makes DNA methylation a potential biomarker of environmental-related and lifestyle-driven diseases of adulthood. Therefore, we investigated if white blood cells' (WBCs) DNA methylation profiles ar

  14. Modeling dune response using measured and equilibrium bathymetric profiles

    Science.gov (United States)

    Fauver, Laura A.; Thompson, David M.; Sallenger, Asbury H.

    2007-01-01

    Coastal engineers typically use numerical models such as SBEACH to predict coastal change due to extreme storms. SBEACH model inputs include pre-storm profiles, wave heights and periods, and water levels. This study focuses on the sensitivity of SBEACH to the details of pre-storm bathymetry. The SBEACH model is tested with two initial conditions for bathymetry, including (1) measured bathymetry from lidar, and (2) calculated equilibrium profiles. Results show that longshore variability in the predicted erosion signal is greater over measured bathymetric profiles, due to longshore variations in initial surf zone bathymetry. Additionally, patterns in predicted erosion can be partially explained by the configuration of the inner surf zone from the shoreline to the trough, with surf zone slope accounting for 67% of the variability in predicted erosion volumes.

  15. Hydrodynamic Models of Line-Driven Accretion Disk Winds II Adiabatic Winds from Nonisothermal Disks

    CERN Document Server

    Pereyra, N A; Blondin, J M; Pereyra, Nicolas Antonio; Kallman, Timothy R.; Blondin, John M.

    2000-01-01

    We present here numerical hydrodynamic simulations of line-driven accretion disk winds in cataclysmic variable systems. We calculate wind mass-loss rate, terminal velocities, and line profiles for CIV (1550 A) for various viewing angles. The models are 2.5-dimensional, include an energy balance condition, and calculate the radiation field as a function of position near an optically thick accretion disk. The model results show that centrifugal forces produce collisions of streamlines in the disk wind which in turn generate an enhanced density region, underlining the necessity of two dimensional calculations where these forces may be represented. For disk luminosity Ldisk = Lsun, white dwarf mass Mwd = 0.6 Msun, and white dwarf radii Rwd = 0.01 Rsun, we obtain a wind mass-loss rate of dMwind/dt = 8.0E-12 Msun/yr, and a terminal velocity of ~3000 km/s. The line profiles we obtain are consistent with observations in their general form, in particular in the maximum absorption at roughly half the terminal velocity ...

  16. Interpretation models and charts of production profiles in horizontal wells

    Institute of Scientific and Technical Information of China (English)

    2009-01-01

    Stratified flow is common for the gravity segregation and flow regimes are very complex because of borehole inclination,therefore,all the conventional production logging tools cannot be effectively applied in horizontal wells,thus significantly increasing the difficulties in log interpretation. In this paper,firstly,the overseas progress in updated integration tools for horizontal wells and production profile interpretation methods has been discussed in brief. Secondly,by means of theory study and experimental simulations,we have obtained the production profile interpretation model and experimental interpretation charts,which have been calibrated by the improved downhole technology and optimization methods. Finally,we have interpreted X-well with the production profile interpretation software designed by us,and it proves that the methods are useful for the production profile interpretation in horizontal wells.

  17. A CORRELATION BETWEEN Lyα SPECTRAL LINE PROFILE AND REST-FRAME UV MORPHOLOGY

    Energy Technology Data Exchange (ETDEWEB)

    Vivian U; Hemmati, Shoubaneh; Darvish, Behnam; Mobasher, Bahram; Nayyeri, Hooshang; Mallery, Ryan [Department of Physics and Astronomy, University of California, Riverside, 900 University Avenue, Riverside, CA 92521 (United States); Dickinson, Mark [National Optical Astronomy Observatory, Tucson, AZ 85719 (United States); Stern, Daniel [Jet Propulsion Laboratory, California Institute of Technology, 4800 Oak Grove Drive, Mail Stop 169-221, Pasadena, CA 91109 (United States); Spinrad, Hyron, E-mail: vivianu@ucr.edu [Department of Astronomy, University of California, Berkeley, CA 94720 (United States)

    2015-12-10

    We explore the relationship between the spectral shape of the Lyα emission and the UV morphology of the host galaxy using a sample of 304 Lyα-emitting BVi-dropouts at 3 < z < 7 in the Great Observatories Origins Deep Survey and Cosmic Evolution Survey fields. Using our extensive reservoir of high-quality Keck DEIMOS spectra combined with Hubble Space Telescope WFC3 data, we measure the Lyα line asymmetries for individual galaxies and compare them to axial ratios measured from observed J- and H-band (restframe UV) images. We find that the Lyα skewness exhibits a large scatter at small elongation (a/b < 2), and this scatter decreases as the axial ratio increases. Comparison of this trend to radiative transfer models and various results from the literature suggests that these high-redshift Lyα emitters are not likely to be intrinsically round and symmetric disks, but they probably host galactic outflows traced by Lyα emitting clouds. The ionizing sources are centrally located, and the optical depth is a good indicator of the absorption and scattering events on the escape path of Lyα photons from the source. Our results find no evidence of evolution in Lyα asymmetry or axial ratio with look-back time.

  18. A Correlation Between Ly{\\alpha} Spectral Line Profile and Rest-Frame UV Morphology

    CERN Document Server

    U, Vivian; Darvish, Behnam; Mobasher, Bahram; Nayyeri, Hooshang; Dickinson, Mark; Stern, Daniel; Spinrad, Hyron; Mallery, Ryan

    2015-01-01

    We explore the relationship between the spectral shape of the Ly{\\alpha} emission and the UV morphology of the host galaxy using a sample of 304 Ly{\\alpha}-emitting BV i-dropouts at 3 < z < 7 in the GOODS and COSMOS fields. Using our extensive reservoir of high-quality Keck DEIMOS spectra combined with HST WFC3 data, we measure the Ly{\\alpha} line asymmetries for individual galaxies and compare them to axial ratios measured from observed J- and H-band (restframe UV) images. We find that the Ly{\\alpha} skewness exhibits a large scatter at small elongation (a/b < 2), and this scatter decreases as axial ratio increases. Comparison of this trend to radiative transfer models and various results from literature suggests that these high-redshift Ly{\\alpha} emitters are not likely to be intrinsically round and symmetric disks, but they probably host galactic outflows traced by Ly{\\alpha} emitting clouds. The ionizing sources are centrally located, with the optical depth a good indicator of the absorption and...

  19. Observation and modeling of anomalous CN polarization profiles produced by the molecular Paschen-Back effect in sunspots

    CERN Document Server

    Ramos, A A; Collados, M

    2005-01-01

    We report novel spectropolarimetric observations of sunspots carried out with the Tenerife Infrared Polarimeter (TIP) in a near-IR spectral region around 15410 A, which is known to contain two groups of prominent OH lines that show circular polarization signals of opposite polarity. Surrounding these well-known OH lines, we have discovered the presence of CN lines of the $\\Delta v=1$ band which show anomalous polarization profiles. Although the Stokes V signals of the OH lines are antisymmetric and with a sizable amplitude, the CN lines show almost negligible circular polarization. On the contrary, the linear polarization signals turn out to be much stronger in the CN lines than in the OH lines. Interestingly, these CN lines present striking antisymmetric linear polarization profiles, which we are able to explain and model via the Paschen-Back effect theory for diatomic molecules. The presence of such peculiar CN lines in the same spectral region of the OH lines may be useful to improve our empirical knowledg...

  20. Time Ordering Effects on Hydrogen Zeeman-Stark Line Profiles in Low-Density Magnetized Plasmas

    Directory of Open Access Journals (Sweden)

    J. Rosato

    2010-01-01

    Full Text Available Stark broadening of hydrogen lines is investigated in low-density magnetized plasmas, at typical conditions of magnetic fusion experiments. The role of time ordering is assessed numerically, by using a simulation code accounting for the evolution of the microscopic electric field generated by the charged particles moving at the vicinity of the atom. The Zeeman effect due to the magnetic field is also retained. Lyman lines with a low principal quantum number n are first investigated, for an application to opacity calculations; next Balmer lines with successively low and high principal quantum numbers are considered for diagnostic purposes. It is shown that neglecting time ordering results in a dramatic underestimation of the Stark effect on the low-n lines. Another conclusion is that time ordering becomes negligible only when ion dynamics effects vanish, as shown in the case of high-n lines.

  1. Towards improved quality of GPCR models by usage of multiple templates and profile-profile comparison.

    Directory of Open Access Journals (Sweden)

    Dorota Latek

    Full Text Available UNLABELLED: G-protein coupled receptors (GPCRs are targets of nearly one third of the drugs at the current pharmaceutical market. Despite their importance in many cellular processes the crystal structures are available for less than 20 unique GPCRs of the Rhodopsin-like class. Fortunately, even though involved in different signaling cascades, this large group of membrane proteins has preserved a uniform structure comprising seven transmembrane helices that allows quite reliable comparative modeling. Nevertheless, low sequence similarity between the GPCR family members is still a serious obstacle not only in template selection but also in providing theoretical models of acceptable quality. An additional level of difficulty is the prediction of kinks and bulges in transmembrane helices. Usage of multiple templates and generation of alignments based on sequence profiles may increase the rate of success in difficult cases of comparative modeling in which the sequence similarity between GPCRs is exceptionally low. Here, we present GPCRM, a novel method for fast and accurate generation of GPCR models using averaging of multiple template structures and profile-profile comparison. In particular, GPCRM is the first GPCR structure predictor incorporating two distinct loop modeling techniques: Modeller and Rosetta together with the filtering of models based on the Z-coordinate. We tested our approach on all unique GPCR structures determined to date and report its performance in comparison with other computational methods targeting the Rhodopsin-like class. We also provide a database of precomputed GPCR models of the human receptors from that class. AVAILABILITY: GPCRM SERVER AND DATABASE: http://gpcrm.biomodellab.eu.

  2. The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity.

    Science.gov (United States)

    Barretina, Jordi; Caponigro, Giordano; Stransky, Nicolas; Venkatesan, Kavitha; Margolin, Adam A; Kim, Sungjoon; Wilson, Christopher J; Lehár, Joseph; Kryukov, Gregory V; Sonkin, Dmitriy; Reddy, Anupama; Liu, Manway; Murray, Lauren; Berger, Michael F; Monahan, John E; Morais, Paula; Meltzer, Jodi; Korejwa, Adam; Jané-Valbuena, Judit; Mapa, Felipa A; Thibault, Joseph; Bric-Furlong, Eva; Raman, Pichai; Shipway, Aaron; Engels, Ingo H; Cheng, Jill; Yu, Guoying K; Yu, Jianjun; Aspesi, Peter; de Silva, Melanie; Jagtap, Kalpana; Jones, Michael D; Wang, Li; Hatton, Charles; Palescandolo, Emanuele; Gupta, Supriya; Mahan, Scott; Sougnez, Carrie; Onofrio, Robert C; Liefeld, Ted; MacConaill, Laura; Winckler, Wendy; Reich, Michael; Li, Nanxin; Mesirov, Jill P; Gabriel, Stacey B; Getz, Gad; Ardlie, Kristin; Chan, Vivien; Myer, Vic E; Weber, Barbara L; Porter, Jeff; Warmuth, Markus; Finan, Peter; Harris, Jennifer L; Meyerson, Matthew; Golub, Todd R; Morrissey, Michael P; Sellers, William R; Schlegel, Robert; Garraway, Levi A

    2012-03-28

    The systematic translation of cancer genomic data into knowledge of tumour biology and therapeutic possibilities remains challenging. Such efforts should be greatly aided by robust preclinical model systems that reflect the genomic diversity of human cancers and for which detailed genetic and pharmacological annotation is available. Here we describe the Cancer Cell Line Encyclopedia (CCLE): a compilation of gene expression, chromosomal copy number and massively parallel sequencing data from 947 human cancer cell lines. When coupled with pharmacological profiles for 24 anticancer drugs across 479 of the cell lines, this collection allowed identification of genetic, lineage, and gene-expression-based predictors of drug sensitivity. In addition to known predictors, we found that plasma cell lineage correlated with sensitivity to IGF1 receptor inhibitors; AHR expression was associated with MEK inhibitor efficacy in NRAS-mutant lines; and SLFN11 expression predicted sensitivity to topoisomerase inhibitors. Together, our results indicate that large, annotated cell-line collections may help to enable preclinical stratification schemata for anticancer agents. The generation of genetic predictions of drug response in the preclinical setting and their incorporation into cancer clinical trial design could speed the emergence of 'personalized' therapeutic regimens.

  3. Evaluation of burst pressure prediction models for line pipes

    Energy Technology Data Exchange (ETDEWEB)

    Zhu, Xian-Kui, E-mail: zhux@battelle.org [Battelle Memorial Institute, 505 King Avenue, Columbus, OH 43201 (United States); Leis, Brian N. [Battelle Memorial Institute, 505 King Avenue, Columbus, OH 43201 (United States)

    2012-01-15

    Accurate prediction of burst pressure plays a central role in engineering design and integrity assessment of oil and gas pipelines. Theoretical and empirical solutions for such prediction are evaluated in this paper relative to a burst pressure database comprising more than 100 tests covering a variety of pipeline steel grades and pipe sizes. Solutions considered include three based on plasticity theory for the end-capped, thin-walled, defect-free line pipe subjected to internal pressure in terms of the Tresca, von Mises, and ZL (or Zhu-Leis) criteria, one based on a cylindrical instability stress (CIS) concept, and a large group of analytical and empirical models previously evaluated by Law and Bowie (International Journal of Pressure Vessels and Piping, 84, 2007: 487-492). It is found that these models can be categorized into either a Tresca-family or a von Mises-family of solutions, except for those due to Margetson and Zhu-Leis models. The viability of predictions is measured via statistical analyses in terms of a mean error and its standard deviation. Consistent with an independent parallel evaluation using another large database, the Zhu-Leis solution is found best for predicting burst pressure, including consideration of strain hardening effects, while the Tresca strength solutions including Barlow, Maximum shear stress, Turner, and the ASME boiler code provide reasonably good predictions for the class of line-pipe steels with intermediate strain hardening response. - Highlights: Black-Right-Pointing-Pointer This paper evaluates different burst pressure prediction models for line pipes. Black-Right-Pointing-Pointer The existing models are categorized into two major groups of Tresca and von Mises solutions. Black-Right-Pointing-Pointer Prediction quality of each model is assessed statistically using a large full-scale burst test database. Black-Right-Pointing-Pointer The Zhu-Leis solution is identified as the best predictive model.

  4. A structural model for multimodular NRPS assembly lines.

    Science.gov (United States)

    Marahiel, Mohamed A

    2016-02-01

    This viewpoint article focuses on the structures of the dissected catalytic domains of non-ribosomal peptide synthetases (NRPSs) associated with substrate selection and activation (A domain), substrate shuttling among the active sites (PCP domain), peptide bond formation (C domain) and product release (TE domain). Structural details of these essential components of the NRPS machinery, integrated in a didomain (PCP-C) and an elongation module (C-A-PCP), were used to generate a model for a multimodular NRPS assembly line.

  5. Mathematical model of delay lines based on magnetostatic waves

    Directory of Open Access Journals (Sweden)

    E. V. Kudinov

    2010-12-01

    Full Text Available On the example of the delay line have demonstrated the possibility of applying the principle of decomposition  to  construct  mathematical  models  of  microwave  devices  using  magnetostatic waves (MSW in a magnetized epitaxial ferrite films, which allows for a unified methodological basis and the lowest cost to the experimental optimization design of MSW devices for various applications

  6. Load distribution model and voltage static profile of Smart Grid

    Institute of Scientific and Technical Information of China (English)

    SUN Qiu-ye; LI Zhong-xu; YANG Jun; LUO Yan-hong

    2010-01-01

    Voltage profiles of feeders with the connection of distributed generations(DGs)were investigated.A unified typical load distribution model was established.Based on this model,exact expressions of feeder voltage profile with single and double DGs were derived and used to analyze the impact of DG's location and capacity on the voltage profile quantitatively.Then,a general formula of the voltage profile was derived.The limitation of single DG and necessity of multiple DGs for voltage regulation were also discussed.Through the simulation,voltage profiles of feeders with single and double DGs were compared.The voltage excursion rate is 7.40% for only one DG,while 2.48% and 2.36% for double DGs.It is shown that the feeder voltage can be retained in a more appropriate range with multiple DGs than with only one DG.Distributing the total capacity of DGs is better than concentrating it at one point.

  7. Reduced Lorenz models for anomalous transport and profile resilience

    DEFF Research Database (Denmark)

    Rypdal, K.; Garcia, Odd Erik

    2007-01-01

    to resilience of the profile. Particular emphasis is put on the diffusionless limit, where these equations reduce to a simple dynamical system depending only on one single forcing parameter. This model is studied numerically, stressing experimentally observable signatures, and some of the perils of dimension...

  8. Tenure Profiles and Efficient Separation in a Stochastic Productivity Model

    NARCIS (Netherlands)

    I.S. Buhai (Sebastian); C.N. Teulings (Coen)

    2005-01-01

    textabstractThis paper provides a new way of analyzing tenure profiles in wages, by modelling simultaneously the evolution of wages and the distribution of tenures. Starting point is the observation that within-job log wages for an individual can be described by random walk. We develop a theoretical

  9. Diagnostics for the structure of AGNs’broad line regions with reverberation mapping data:confirmation of the two-component broad line region model

    Institute of Scientific and Technical Information of China (English)

    2010-01-01

    We re-examine the ten Reverberation Mapping(RM) sources with public data based on the two-component model of the Broad Line Region(BLR).In fitting their broad Hβ Mlines,six of them only need one Gaussian component,one of them has a double-peak profile,one has an irregular profile,and only two of them need two components,i.e.,a Very Broad Gaussian Component(VBGC) and an Inter-Mediate Gaussian Component(IMGC).The Gaussian components are assumed to come from two distinct regions in the two-component model;they are the Very Broad Line Region(VBLR) and the Inter-Mediate Line region(IMLR).The two sources with a two-component profile are Mrk 509 and NGC 4051.The time lags of the two components of both sources satisfy tIMLR/tVBLR=V 2VBLR/V 2IMLR,where tIMLR and tVBLR are the lags of the two components while VIMLR and VVBLR represent the mean gas velocities of the two regions,supporting the two-component model of the BLR of Active Galactic Nuclei(AGNs).The fact that most of these ten sources only have the VBGC confirms the assumption that RM mainly measures the radius of the VBLR;consequently,the radius obtained from the R-L relationship mainly represents the radius of VBLR.Moreover,NGC 4051,with a lag of about 5 days in the one component model,is an outlier on the R-L relationship as shown in Kaspi et al.(2005);however this problem disappears in our two-component model with lags of about 2 and 6 days for the VBGC and IMGC,respectively.

  10. PROFILES AND PREFERENCES OF ON-LINE MILLENIAL SHOPPERS IN BULGARIA

    Directory of Open Access Journals (Sweden)

    Patricia R. Loubeau

    2014-05-01

    Full Text Available This research seeks to develop a better understanding of the factors affecting on-line purchasing behavior among Generation Y (Gen Y consumers in Bulgaria. Also called millenials and born between the mid-1970s and late 1990s, this generation is especially active on-line and will be a dominant influence shaping e-commerce. An empirical study was conducted based on a written survey of a sample consisting of 367 high school and university students in Bulgaria. The most important reason why Bulgarian young people shop on-line is the pursuit of unique products not locally available, followed by convenience and better pricing, and their favorite category of internet purchases is “Apparel and Accessories.” Bulgarian millennials are using the internet to shop for trendy fashion and to obtain a variety of brands that are unavailable locally. Like other regions of the world, concern about financial transactions security is a major barrier limiting the willingness to shop on-line in Bulgaria. Unlike other markets where on-line music purchases are growing, high levels of digital piracy in Bulgaria strongly discourage Bulgarian students from purchasing music on-line. One limitation of this study arises because of its reliance on a convenience sample of students from medium sized cities in Southern Bulgaria. Further research employing stratified random sampling across Bulgaria is needed to assess whether the findings are broadly generalizable for the Gen Y population.

  11. Proteomic profiling of animal models mimicking skeletal muscle disorders

    OpenAIRE

    Doran, Philip; Gannon, Joan; O'Connell, Kathleen; Ohlendieck, Kay

    2007-01-01

    Over the last few decades of biomedical research, animal models of neuromuscular diseases have been widely used for determining pathological mechanisms and for testing new therapeutic strategies. With the emergence of high-throughput proteomics technology, the identification of novel protein factors involved in disease processes has been decisively improved. This review outlines the usefulness of the proteomic profiling of animal disease models for the discovery of new reliable biomarkers, fo...

  12. Piecewise multivariate modelling of sequential metabolic profiling data

    Directory of Open Access Journals (Sweden)

    Nicholson Jeremy K

    2008-02-01

    Full Text Available Abstract Background Modelling the time-related behaviour of biological systems is essential for understanding their dynamic responses to perturbations. In metabolic profiling studies, the sampling rate and number of sampling points are often restricted due to experimental and biological constraints. Results A supervised multivariate modelling approach with the objective to model the time-related variation in the data for short and sparsely sampled time-series is described. A set of piecewise Orthogonal Projections to Latent Structures (OPLS models are estimated, describing changes between successive time points. The individual OPLS models are linear, but the piecewise combination of several models accommodates modelling and prediction of changes which are non-linear with respect to the time course. We demonstrate the method on both simulated and metabolic profiling data, illustrating how time related changes are successfully modelled and predicted. Conclusion The proposed method is effective for modelling and prediction of short and multivariate time series data. A key advantage of the method is model transparency, allowing easy interpretation of time-related variation in the data. The method provides a competitive complement to commonly applied multivariate methods such as OPLS and Principal Component Analysis (PCA for modelling and analysis of short time-series data.

  13. Systematic Blueshift of Line Profiles in the Type IIn Supernova 2010jl: Evidence for Post-Shock Dust Formation?

    CERN Document Server

    Smith, Nathan; Filippenko, Alexei V; Cooper, Michael C; Matheson, Thomas; Bian, Fuyan; Weiner, Benjamin J; Comerford, Julia M

    2011-01-01

    Type IIn SNe show spectral evidence for strong interaction between their blast wave and dense circumstellar material (CSM) around the progenitor star. SN2010jl was the brightest core-collapse SN in 2010, and it was a Type IIn explosion with strong CSM interaction. Andrews et al. recently reported evidence for an IR excess in SN2010jl, indicating either new dust formation or the heating of CSM dust in an IR echo. Here we report multi-epoch spectra of SN2010jl that reveal the tell-tale signature of new dust formation: emission-line profiles becoming systematically more blueshifted as the red side of the line is blocked by increasing extinction. The effect is seen clearly in the intermediate-width (400--4000 km/s) component of H$\\alpha$ beginning roughly 30d after explosion. Moreover, we present near-IR spectra demonstrating that the asymmetry in the hydrogen-line profiles is wavelength dependent, appearing more pronounced at shorter wavelengths. This evidence suggests that new dust grains had formed quickly in ...

  14. Quantitative profiling of housekeeping and Epstein-Barr virus gene transcription in Burkitt lymphoma cell lines using an oligonucleotide microarray

    Directory of Open Access Journals (Sweden)

    Niggli Felix K

    2006-06-01

    Full Text Available Abstract Background The Epstein-Barr virus (EBV is associated with lymphoid malignancies, including Burkitt's lymphoma (BL, and can transform human B cells in vitro. EBV-harboring cell lines are widely used to investigate lymphocyte transformation and oncogenesis. Qualitative EBV gene expression has been extensively described, but knowledge of quantitative transcription is lacking. We hypothesized that transcription levels of EBNA1, the gene essential for EBV persistence within an infected cell, are similar in BL cell lines. Results To compare quantitative gene transcription in the BL cell lines Namalwa, Raji, Akata, Jijoye, and P3HR1, we developed an oligonucleotide microarray chip, including 17 housekeeping genes, six latent EBV genes (EBNA1, EBNA2, EBNA3A, EBNA3C, LMP1, LMP2, and four lytic EBV genes (BZLF1, BXLF2, BKRF2, BZLF2, and used the cell line B95.8 as a reference for EBV gene transcription. Quantitative polymerase chain reaction assays were used to validate microarray results. We found that transcription levels of housekeeping genes differed considerably among BL cell lines. Using a selection of housekeeping genes with similar quantitative transcription in the tested cell lines to normalize EBV gene transcription data, we showed that transcription levels of EBNA1 were quite similar in very different BL cell lines, in contrast to transcription levels of other EBV genes. As demonstrated with Akata cells, the chip allowed us to accurately measure EBV gene transcription changes triggered by treatment interventions. Conclusion Our results suggest uniform EBNA1 transcription levels in BL and that microarray profiling can reveal novel insights on quantitative EBV gene transcription and its impact on lymphocyte biology.

  15. Metabolism and fatty acid profile in fat and lean rainbow trout lines fed with vegetable oil: effect of carbohydrates.

    Directory of Open Access Journals (Sweden)

    Biju Sam Kamalam

    Full Text Available The present study investigated the effect of dietary carbohydrates on metabolism, with special focus on fatty acid bioconversion and flesh lipid composition in two rainbow trout lines divergently selected for muscle lipid content and fed with vegetable oils. These lines were chosen based on previously demonstrated potential differences in LC-PUFA synthesis and carbohydrate utilization. Applying a factorial study design, juvenile trout from the lean (L and the fat (F line were fed vegetable oil based diets with or without gelatinised starch (17.1% for 12 weeks. Blood, liver, muscle, intestine and adipose tissue were sampled after the last meal. Feed intake and growth was higher in the L line than the F line, irrespective of the diet. Moderate postprandial hyperglycemia, strong induction of hepatic glucokinase and repressed glucose-6-phosphatase transcripts confirmed the metabolic response of both lines to carbohydrate intake. Further at the transcriptional level, dietary carbohydrate in the presence of n-3 LC-PUFA deficient vegetable oils enhanced intestinal chylomicron assembly, disturbed hepatic lipid metabolism and importantly elicited a higher response of key desaturase and elongase enzymes in the liver and intestine that endorsed our hypothesis. PPARγ was identified as the factor mediating this dietary regulation of fatty acid bioconversion enzymes in the liver. However, these molecular changes were not sufficient to modify the fatty acid composition of muscle or liver. Concerning the genotype effect, there was no evidence of substantial genotypic difference in lipid metabolism, LC-PUFA synthesis and flesh fatty acid profile when fed with vegetable oils. The minor reduction in plasma glucose and triglyceride levels in the F line was linked to potentially higher glucose and lipid uptake in the muscle. Overall, these data emphasize the importance of dietary macro-nutrient interface in evolving fish nutrition strategies.

  16. Modeling of unusual nonlinear behaviors in superconducting microstrip transmission lines

    Energy Technology Data Exchange (ETDEWEB)

    Javadzadeh, S. Mohammad Hassan, E-mail: smh_javadzadeh@ee.sharif.edu [School of Electrical Engineering, Sharif University of Technology, P.O. Box 11365-9363, Tehran (Iran, Islamic Republic of); Farzaneh, Forouhar; Fardmanesh, Mehdi [School of Electrical Engineering, Sharif University of Technology, P.O. Box 11365-9363, Tehran (Iran, Islamic Republic of)

    2013-03-15

    Highlights: ► Avoiding of considering just quadratic or modulus nonlinearity. ► Proposing a nonlinear model to predict unusual nonlinear behaviors at low temperatures. ► Description of temperature dependency of nonlinear behaviors in superconducting lines. ► Analytical formulation for each parameter in our proposed model. ► Obtaining very good results which shows this model can predict unusual nonlinear behavior. -- Abstract: There are unusual nonlinear behaviors in superconducting materials, especially at low temperatures. This paper describes the procedure to reliably predict this nonlinearity in superconducting microstrip transmission lines (SMTLs). An accurate nonlinear distributed circuit model, based on simultaneously considering of both quadratic and modulus nonlinearity dependences, is proposed. All parameters of the equivalent circuit can be calculated analytically using proposed closed-form expressions. A numerical method based on Harmonic Balance approach is used to predict nonlinear phenomena like intermodulation distortions and third harmonic generations. Nonlinear analyses of the SMTLs at the different temperatures and the input powers have been presented. This proposed model can describe the unusual behaviors of the nonlinearity at low temperatures, which are frequently observed in the SMTLs.

  17. Center to limb observations and modeling of the Ca I 4227 A line

    CERN Document Server

    Supriya, H D; Nagendra, K N; Stenflo, J O; Bianda, M; Ramelli, R; Ravindra, B; Anusha, L S

    2014-01-01

    The observed center-to-limb variation (CLV) of the scattering polarization in different lines of the Second Solar Spectrum can be used to constrain the height variation of various atmospheric parameters, in particular the magnetic fields via the Hanle effect. Here we attempt to model non-magnetic CLV observations of the $Q/I$ profiles of the Ca I 4227 A line recorded with the ZIMPOL-3 at IRSOL. For modeling, we use the polarized radiative transfer with partial frequency redistribution with a number of realistic 1-D model atmospheres. We find that all the standard FAL model atmospheres, used by us, fail to simultaneously fit the observed ($I$, $Q/I$) at all the limb distances ($\\mu$). However, an attempt is made to find a single model which can provide a fit at least to the CLV of the observed $Q/I$ instead of a simultaneous fit to the ($I$, $Q/I$) at all $\\mu$. To this end we construct a new 1-D model by combining two of the standard models after modifying their temperature structures in the appropriate heigh...

  18. Conformal profiles in the Hilhorst-van Leeuwen model

    Science.gov (United States)

    Karevski, D.; Turban, L.; Iglói, F.

    2000-04-01

    We study the critical energy and magnetization profiles for the Ising quantum chain with a marginal extended surface perturbation of the form A /y , y being the distance from the surface (Hilhorst-van Leeuwen model). For weak local couplings, A A c , there is surface order at the bulk critical point. If conformal invariance is assumed to hold with such marginal perturbations, it predicts conformal profiles with the same scaling form as for the unperturbed quantum chain, with marginal surface exponents replacing the unperturbed ones. The results of direct analytical and numerical calculations of the profiles confirm the validity of the conformal expressions in the regimes of second- and first-order surface transitions.

  19. Radiation thermo-chemical models of protoplanetary disks. II. Line diagnostics

    Science.gov (United States)

    Kamp, I.; Tilling, I.; Woitke, P.; Thi, W.-F.; Hogerheijde, M.

    2010-01-01

    Aims: In this paper, we explore the diagnostic power of the far-IR fine-structure lines of [Oi] 63.2 μm, 145.5 μm, [Cii] 157.7 μm, as well as the radio and sub-mm lines of CO J=1-0, 2-1 and 3-2 in application to disks around Herbig Ae stars. We aim at understanding where the lines originate from, how the line formation process is affected by density, temperature and chemical abundance in the disk, and to what extent non-LTE effects are important. The ultimate aim is to provide a robust way to determine the gas mass of protoplanetary disks from line observations. Methods: We use the recently developed disk code ProDiMo to calculate the physico-chemical structure of protoplanetary disks and apply the Monte-Carlo line radiative transfer code Ratran to predict observable line profiles and fluxes. We consider a series of Herbig Ae type disk models ranging from 10-6 M_⊙ to 2.2 × 10-2 M_⊙ (between 0.5 and 700 AU) to discuss the dependency of the line fluxes and ratios on disk mass for otherwise fixed disk parameters. This paper prepares for a more thorough multi-parameter analysis related to the Herschel open time key program Gasps. Results: We find the [Cii] 157.7 μm line to originate in LTE from the surface layers of the disk, where The total emission is dominated by surface area and hence depends strongly on disk outer radius. The [Oi] lines can be very bright (>10-16 W/m2) and form in slightly deeper and closer regions under non-LTE conditions. For low-mass models, the [Oi] lines come preferentially from the central regions of the disk, and the peak separation widens. The high-excitation [Oi] 145.5 μm line, which has a larger critical density, decreases more rapidly with disk mass than the 63.2 μm line. Therefore, the [Oi] 63.2 μm/145.5 μm ratio is a promising disk mass indicator, especially as it is independent of disk outer radius for R_out>200 AU. CO is abundant only in deeper layers AV ⪆ 0.05. For too low disk masses (M_disk⪉10-4~M_⊙) the dust

  20. Drug sensitivity and drug resistance profiles of human intrahepatic cholangiocarcinoma cell lines

    Institute of Scientific and Technical Information of China (English)

    Nisana Tepsiri; Liengchai Chaturat; Banchob Sripa; Wises Namwat; Sopit Wongkham; Vajarabhongsa Bhudhisawasdi; Wichittra Tassaneeyakul

    2005-01-01

    AIM: To study the effect of a number of chemotherapeutic drugs on five human intrahepatic cholangiocarcinoma (CCA) cell lines. The expressions of genes that have been proposed to influence the resistance of chemotherapeutic drugs including thymidylate synthase (TS), dihydropyrimidine dehydrogenase (DPD), glutathione-S-transferase P1 (GSTP1), multidrug resistance protein (MDR1) and multidrug resistance-associated proteins (MRPs) were also determined.METHODS: Five human CCA cell lines (KKU-100, KKU M055, KKU-M156, KKU-M214 and KKU-OCA17) weretreated with various chemotherapeutic drugs and growth inhibition was determined by 3-(4,5-dimethylthiazol-2-yl)5-(3-carboxymethoxyphenyl)-2-(4-sulfophenyl)-2H-tetrazolium (MTS) assay. Semi-quantitative levels of gene expression were determined by a reverse transcriptase polymerase chain reaction (RT-PCR). Results of IC50 values and the ratios of gene expression were analyzed by linear regression to predict their relationship. RESULTS: Among five CCA cell lines, KKU-M055 was the most sensitive cell line towards all chemotherapeutic drugs investigated, particularly taxane derivatives with IC50 values of 0.02-3 nmol/L, whereas KKU-100 was apparently the least sensitive cell line. When compared to other chemotherapeutic agents, doxorubicin and pirarubicin showed the lowest IC50 values (<5 μmol/L) in all five CCA cell lines. Results from RT-PCR showed that TS, MRP1, MRP3 and GSTP1 were highly expressed in these five CCA cell lines while DPD and MRP2 were only moderately expressed. It should be noted that MDR1 expression was detected only in KKU-OCA17 cell lines. A strong correlation was only found between the level of MRP3 expression and the IC50 values of etoposide, doxorubicin and pirarubicin (r = 0.86-0.98, ,P<0.05). CONCLUSION: Sensitivity to chemotherapeutic agents is not associated with the histological type of CCA. Choosing of the appropriate chemotherapeutic regimen for the treatment of CCA requires knowledge of drug

  1. Oxygen lines in solar granulation. I. Testing 3D models against new observations with high spatial and spectral resolution

    CERN Document Server

    Pereira, Tiago M D; Asplund, Martin

    2009-01-01

    Aims: we seek to provide additional tests of the line formation of theoretical 3D solar photosphere models. In particular, we set out to test the spatially-resolved line formation at several viewing angles, from the solar disk-centre to the limb and focusing on atomic oxygen lines. The purpose of these tests is to provide additional information on whether the 3D model is suitable to derive the solar oxygen abundance. We also aim to empirically constrain the NLTE recipes for neutral hydrogen collisions, using the spatially-resolved observations of the OI 777 nm lines. Methods: using the Swedish 1-m Solar Telescope we obtained high-spatial-resolution observations of five atomic oxygen lines (along with lines for other species) for five positions on the solar disk. These observations have a high spatial and spectral resolution, and a continuum intensity contrast up to 9% at 615 nm. The theoretical line profiles were computed using the 3D model, with a full 3D NLTE treatment for oxygen and LTE for the other lines...

  2. Consistent Static Models of Local Thermospheric Composition Profiles

    CERN Document Server

    Picone, J M; Drob, D P

    2016-01-01

    The authors investigate the ideal, nondriven multifluid equations of motion to identify consistent (i.e., truly stationary), mechanically static models for composition profiles within the thermosphere. These physically faithful functions are necessary to define the parametric core of future empirical atmospheric models and climatologies. Based on the strength of interspecies coupling, the thermosphere has three altitude regions: (1) the lower thermosphere (herein z ~200 km), in which the species flows are approximately uncoupled; and (3) a transition region in between, where the effective species particle mass and the effective species vertical flow interpolate between the solutions for the upper and lower thermosphere. We place this view in the context of current terminology within the community, i.e., a fully mixed (lower) region and an upper region in diffusive equilibrium (DE). The latter condition, DE, currently used in empirical composition models, does not represent a truly static composition profile ...

  3. Hodgkin Lymphoma Cell Lines Are Characterized by a Specific miRNA Expression Profile

    NARCIS (Netherlands)

    Gibcus, Johan H.; Tan, Lu Ping; Harms, Geert; Schakel, Rikst Nynke; de Jong, Debora; Blokzijl, T.; Moller, Peter; Poppema, Sibrand; Kroesen, Bart-Jan; van den Berg, Anke

    Hodgkin lymphoma (HL) is derived from preapoptotic germinal center B cells, although a general loss of B cell phenotype is noted. Using quantitative reverse transcription-polymerase chain reaction and miRNA microarray, we determined the microRNA (miRNA) profile of HL and compared this with the

  4. Modeling the Noise for Indoor Power Line Channel

    Directory of Open Access Journals (Sweden)

    Syed Samser Ali

    2013-07-01

    Full Text Available Electromagnetic interference, man-made noise, and multipath effects are main causes of bit errors in power-line communication. To design an efficient powerline transmission system, the channel characterization has to be known and this paper deals with a statistical noise model (SNM for the indoor powerline channel in a frequency band from 1 MHz to 30 MHz . The SNM parameters are obtained from large-scale measurements of the noise density spectrum on a real powerline channel. All measurements are between line and neutral at different locations in the same grid. The SNM is used for simulation of the noise density spectrum and offline analysis on the powerline channel

  5. New aspects of absorption line formation in intervening turbulent clouds; 3, The inverse problem in the study of H+D profiles

    CERN Document Server

    Levshakov, S A; Takahara, F

    1997-01-01

    A new method, based on a Reverse Monte Carlo technique and aimed at the inverse problem in the analysis of interstellar (intergalactic) absorption lines is presented. We consider the process of line formation in media with a stochastic velocity field accounting for the effects of a finite correlation length (mesoturbulence). This approach generalizes the standard microturbulent approximation, which is commonly used to model the formation of absorption spectra in turbulent media. The method allows to estimate from an observed spectrum both, the physical parameters of the absorbing gas, and an appropriate structure of the velocity distribution parallel to the line of sight. The procedure is applied to a template H+D Ly-alpha profile which reproduces the Burles and Tytler [BT] spectrum of the quasar Q 1009+2956 with the DI Ly-alpha line seen at the redshift z = 2.504. The results obtained favor a low D/H ratio in this particular absorption system, although the inferred upper limit for the hydrogen isotopic ratio...

  6. Neonatal Cytokine Profile in the Airway Mucosal Lining Fluid Is Skewed by Maternal Atopy

    DEFF Research Database (Denmark)

    Folsgaard, Nilofar V.; Chawes, Bo L.; Rasmussen, Morten A.;

    2012-01-01

    on the cytokines and chemokines in the upper airway mucosal lining fluid of healthy neonates. Objectives: To study parental atopic imprinting on the cytokines and chemokines in the upper airway mucosal lining fluid of healthy neonates. Methods: Eighteen cytokines and chemokines were quantified in nasal mucosal...... lining fluid in 309 neonates from the novel unselected Copenhagen Prospective Study on Asthma in Childhood (COPSAC) birth cohort. Measurements and Main Results: Maternal, but not paternal, atopic status (asthma, hay fever, or eczema with or without sensitization) was associated with general down......-regulation of all 18 mediators assessed by principal component analysis (overall P = 0.015). Conclusions: Maternal atopy, but not paternal atopy, showed a strong linkage with a suppressed mucosal cytokine and chemokine signature in asymptomatic neonates, suggesting imprinting by the maternal milieu in utero...

  7. Temporal Variation of Ca–K Line Profile of the Sun during the Solar Cycle 22 and 23

    Indian Academy of Sciences (India)

    G. Sindhuja; Jagdev Singh

    2015-03-01

    We obtained the Ca–K line profile of the Sun as a star since 1969 at the Kodaikanal Observatory (KO) and analysis of the data showed the need to delineate the role of different chromospheric features to the variations of solar irradiance. We, therefore, initiated a new methodology to make observations of Ca–K line profiles of the Sun as a function of latitude and integrated over the longitude on a daily basis since 1986. We have collected the data for about thousand days, spread over two solar cycles. Earlier data (before 1997) were recorded on the photographic film and later data using the CCD detector. The photographic film data were digitized and analysed along with the data obtained from CCD camera. From these data, we computed K1 and K2 widths for the Sun as a star, using all the observed line profiles as a function of latitude. In addition, we have analyzed the spectra of the whole Sun as a star obtained on some days and compared it with the results obtained from latitude spectra of the same day. The K1 and K2 widths of the Sun as a star derived from the KO data are compared with values determined from the observations made at other observatories to compare results from the new methodology of observations adopted by us and the earlier techniques. The average values of K1 width during the minimum period. of solar cycle 23 are smaller than those during the minimum period of cycle 22. Day-to-day variations in the K1 and K2 widths and plage areas may imply that irradiance variations occur not only due to large-scale solar activity, but also because of variations in some of the three types of network in quiet regions of the Sun. The variation in intensity of the plages can also cause day-to-day variations in widths.

  8. Stacking Spectra in Protoplanetary Disks: Detecting Intensity Profiles from Hidden Molecular Lines in HD 163296

    Science.gov (United States)

    Yen, Hsi-Wei; Koch, Patrick M.; Liu, Hauyu Baobab; Puspitaningrum, Evaria; Hirano, Naomi; Lee, Chin-Fei; Takakuwa, Shigehisa

    2016-12-01

    We introduce a new stacking method in Keplerian disks that (1) enhances signal-to-noise ratios (S/Ns) of detected molecular lines and (2) makes visible otherwise-undetectable weak lines. Our technique takes advantage of the Keplerian rotational velocity pattern. It aligns spectra according to their different centroid velocities at their different positions in a disk and stacks them. After aligning, the signals are accumulated in a narrower velocity range as compared to the original line width without alignment. Moreover, originally correlated noise becomes decorrelated. Stacked and aligned spectra thus have a higher S/N. We apply our method to Atacama Large Millimeter/Submillimeter Array (ALMA) archival data of DCN (3-2), DCO+ (3-2), N2D+ (3-2), and H2CO (3{}{0,3}-2{}{0,2}), (3{}{2,2}-2{}{2,1}), and (3{}{2,1}-2{}{2,0}) in the protoplanetary disk around HD 163296. As a result, (1) the S/Ns of the originally detected DCN (3-2), DCO+ (3-2), H2CO (3{}{0,3}-2{}{0,2}), and N2D+ (3-2) lines are boosted by a factor of ≳4-5 at their spectral peaks, implying one order of magnitude shorter integration times to reach the original S/N; and (2) the previously undetectable spectra of the H2CO (3{}{2,2}-2{}{2,1}) and (3{}{2,1}-2{}{2,0}) lines are materialized at more than 3σ. These dramatically enhanced S/Ns allow us to measure intensity distributions in all lines with high significance. The principle of our method can be applied not only to Keplerian disks but also to any systems with ordered kinematic patterns.

  9. PROFILES AND PREFERENCES OF ON-LINE MILLENIAL SHOPPERS IN BULGARIA

    OpenAIRE

    Loubeau, Patricia R.; Robert Jantzen; Elitsa Alexander

    2014-01-01

    This research seeks to develop a better understanding of the factors affecting on-line purchasing behavior among Generation Y (Gen Y) consumers in Bulgaria. Also called millenials and born between the mid-1970s and late 1990s, this generation is especially active on-line and will be a dominant influence shaping e-commerce. An empirical study was conducted based on a written survey of a sample consisting of 367 high school and university students in Bulgaria. The most important reason why Bulg...

  10. Comparison of lung cancer cell lines representing four histopathological subtypes with gene expression profiling using quantitative real-time PCR

    Directory of Open Access Journals (Sweden)

    Kawaguchi Makoto

    2010-01-01

    Full Text Available Abstract Background Lung cancers are the most common type of human malignancy and are intractable. Lung cancers are generally classified into four histopathological subtypes: adenocarcinoma (AD, squamous cell carcinoma (SQ, large cell carcinoma (LC, and small cell carcinoma (SC. Molecular biological characterization of these subtypes has been performed mainly using DNA microarrays. In this study, we compared the gene expression profiles of these four subtypes using twelve human lung cancer cell lines and the more reliable quantitative real-time PCR (qPCR. Results We selected 100 genes from public DNA microarray data and examined them by DNA microarray analysis in eight test cell lines (A549, ABC-1, EBC-1, LK-2, LU65, LU99, STC 1, RERF-LC-MA and a normal control lung cell line (MRC-9. From this, we extracted 19 candidate genes. We quantified the expression of the 19 genes and a housekeeping gene, GAPDH, with qPCR, using the same eight cell lines plus four additional validation lung cancer cell lines (RERF-LC-MS, LC-1/sq, 86-2, and MS-1-L. Finally, we characterized the four subtypes of lung cancer cell lines using principal component analysis (PCA of gene expression profiling for 12 of the 19 genes (AMY2A, CDH1, FOXG1, IGSF3, ISL1, MALL, PLAU, RAB25, S100P, SLCO4A1, STMN1, and TGM2. The combined PCA and gene pathway analyses suggested that these genes were related to cell adhesion, growth, and invasion. S100P in AD cells and CDH1 in AD and SQ cells were identified as candidate markers of these lung cancer subtypes based on their upregulation and the results of PCA analysis. Immunohistochemistry for S100P and RAB25 was closely correlated to gene expression. Conclusions These results show that the four subtypes, represented by 12 lung cancer cell lines, were well characterized using qPCR and PCA for the 12 genes examined. Certain genes, in particular S100P and CDH1, may be especially important for distinguishing the different subtypes. Our results

  11. Measurement of storage time, estimation of ion number and study of absorption line profile in a Paul trap

    Indian Academy of Sciences (India)

    Soumen Bhattacharyya; Anita Gupta; S G Nakhate; Pushpa M Rao

    2006-12-01

    Europium (Eu+) ions were confined in a Paul trap and detected by non-destructive method. Storage time of Eu+ ions achieved in vacuum was improved by orders of magnitude employing buffer gas cooling. The experimentally detected signal was fitted to the ion response signal and the total number of ions trapped was estimated. It is found that the peak signal amplitude as well as the product of FWHM and the peak signal amplitude is proportional to the total number of trapped ions. The trapped ion secular frequency was swept at different rates and its effect on the absorption line profile was studied both experimentally and theoretically.

  12. Effects of Magnetic Coupling on Profile of Emission Lines and Images of an Accretion Disc Around a Black Hole

    Institute of Scientific and Technical Information of China (English)

    MA Ren-Yi; WANG Ding-Xiong; LEI Wei-Hua; YAO Guo-Zheng

    2004-01-01

    @@ The profiles of emission lines and images of an accretion disc around a black hole (BH) are simulated by considering the effects of the magnetic coupling (MC) of a central BH with the disc. The MC effects are discussed for both slow- and fast-spinning BHs, and the following results are obtained. Firstly, the width of the emission lines and the brightness of the disc are reduced and augmented for slow- and fast-spinning BHs, respectively. Secondly,the image of the disc becomes dimmer and brighter near the inner edge of the disc for slow- and fast-spinning BHs, respectively. It turns out that all these results arise from the MC effects on the position of the dominant emission region of the accretion disc.

  13. Emission Line Profiles and Images of Geometrically Thin and Optically Thick Accretion Disks%几何薄光学厚吸积盘谱线轮廓及成像研究

    Institute of Scientific and Technical Information of China (English)

    潘彩娟

    2009-01-01

    假设位于黑洞赤道面上做圆形轨道运动的吸积盘是几何薄、光学厚的.利用光子追踪法计算在Kerr度规下的光子运动轨迹,通过数值计算研究薄吸积盘的相对论谱线轮廓及成像.在大角度观测时,吸积盘下表面的光子对谱线轮廓及成像的影响是显著的.%In the paper, it is programmed to get relativistic iron lines profile and flux images of accretion disks. The simplest case of a geometrically thin, optically thick accretion disk around a Kerr(spinning) black hole is focused.Ray tracing method is used in the trajectory of the photon in the Kerr metric, by numerical calculation to model theoretical emission line profiles and disk images. We get relativistic iron lines profile which is about flux varies as frequency varies and images of accretion disks. Viewing at large inclinations,because of contribution of the photons under the surface of the disk,the line profile appear double-peaked profile and the images are significantly changed.

  14. DNA Methylation Profiles of Protease Nexin 1 (SERPINE2) Gene in Human Cell Lines

    Institute of Scientific and Technical Information of China (English)

    Shan Gao; Peter A. Andreasen

    2011-01-01

    Objective: To investigated whether epigenetic mechanisms contribute to the variable expression of variable protease nexin1(PN-1) encoded by the SERPINE2 gene in different cell types. Methods: Working with 5 human cell lines, we determined the CpG methylation status within two CpG islands in the SERPINE2 gene by bisulphate sequencing and the PN-1 mRNA level by Q-RT PCR. Results: A CpG island spanning the transcription initiation site showed little methylation in 3 of the cell lines and substantial methylation in 2 of the cell lines. A CpG island covering the translation starting site showed full methylation in all investigated cell lines. Methylation within the CpG island was not randomly distributed, but showed accumulation at specific sites. However, we were not able to distinguish any patterns which related the methylation frequency to the gene expression level. Inhibition of CpG methylation with 5-aza-2′-deoxycytidine led to a several fold increase in PN-1 mRNA levels, but based on the results on CpG methylation in the CpG island spanning the transcript, the effect is most likely indirect. Conclusion: We have carefully mapped the CpG methylation pattern in two CpG islands in the 5′ part of the SERPINE2 gene without finding any obvious inverse correlation between methylation frequency and expression level.

  15. Stacking Spectra in Protoplanetary Disks: Detecting Intensity Profiles from Hidden Molecular Lines in HD 163296

    CERN Document Server

    Yen, Hsi-Wei; Liu, Hauyu Baobab; Puspitaningrum, Evaria; Hirano, Naomi; Lee, Chin-Fei; Takakuwa, Shigehisa

    2016-01-01

    We introduce a new stacking method in Keplerian disks that (1) enhances signal-to-noise ratios (S/N) of detected molecular lines and (2) that makes visible otherwise undetectable weak lines. Our technique takes advantage of the Keplerian rotational velocity pattern. It aligns spectra according to their different centroid velocities at their different positions in a disk and stacks them. After aligning, the signals are accumulated in a narrower velocity range as compared to the original line width without alignment. Moreover, originally correlated noise becomes de-correlated. Stacked and aligned spectra, thus, have a higher S/N. We apply our method to ALMA archival data of DCN (3-2), DCO+ (3-2), N2D+ (3-2), and H2CO (3_0,3-2_0,2), (3_2,2-2_2,1), and (3_2,1-2_2,0) in the protoplanetary disk around HD 163296. As a result, (1) the S/N of the originally detected DCN (3-2), DCO+ (3-2), and H2CO (3_0,3-2_0,2) and N2D+ (3-2) lines are boosted by a factor of >4-5 at their spectral peaks, implying one order of magnitud...

  16. Effect of D-allose on prostate cancer cell lines: phospholipid profiling by nanoflow liquid chromatography-tandem mass spectrometry.

    Science.gov (United States)

    Jeong, Rae Ung; Lim, Sangsoo; Kim, Myoung Ok; Moon, Myeong Hee

    2011-08-01

    D-Allose, a rare, naturally occurring monosaccharide, is known to exert anti-proliferative effects on cancer cells. The effects of D-allose on the cellular membranes of hormone-refractory prostate cancer cell line (DU145), hormone-sensitive prostate cancer cell line (LNCaP), and normal prostate epithelial cells (PrEC) were studied at the molecular level by phospholipid (PL) profiling using a shotgun lipidomic method. The molecular structures of 85 PL species including 23 phosphatidylcholines, 12 phosphatidylethanolamines (PEs), 11 phosphatidylserines (PSs), 16 phosphatidylinositols, 9 phosphatidic acids (PAs), and 14 phosphatidylglycerols (PGs) were identified by data-dependent collision-induced dissociation of nanoflow liquid chromatography-tandem mass spectrometry, and the PL amounts were quantified. The addition of D-allose to prostate cancer cell lines during their growth phases had negligible or decreased effects on the relative regulation of PL species, but several new PS molecules (two for DU145 and three for LNCaP) emerged. In contrast, experiments on the PrEC cell line revealed that some high abundant species (14:0/14:0-PE, 16:2/16:0-PG, and 20:6/18:1-PA) showed significant increases in concentration. These findings support a mechanism for the anti-proliferative effect of D-allose on prostate cancer cell lines that involves the induction of programmed cell death since PS molecules are known to induce apoptosis. Principal component analysis was carried out to examine differences in PL distributions among the three cell lines promoted by D-allose.

  17. Hidden Markov Models for the Activity Profile of Terrorist Groups

    CERN Document Server

    Raghavan, Vasanthan; Tartakovsky, Alexander G

    2012-01-01

    The main focus of this work is on developing models for the activity profile of a terrorist group, detecting sudden spurts and downfalls in this profile, and in general, tracking it over a period of time. Toward this goal, a d-state hidden Markov model (HMM) that captures the latent states underlying the dynamics of the group and thus its activity profile is developed. The simplest setting of d = 2 corresponds to the case where the dynamics are coarsely quantized as Active and Inactive, respectively. Two strategies for spurt detection and tracking are developed here: a model-independent strategy that uses the exponential weighted moving-average (EWMA) filter to track the strength of the group as measured by the number of attacks perpetrated by it, and a state estimation strategy that exploits the underlying HMM structure. The EWMA strategy is robust to modeling uncertainties and errors, and tracks persistent changes (changes that last for a sufficiently long duration) in the strength of the group. On the othe...

  18. MODELLING AND VIBRATION ANALYSIS OF A ROAD PROFILE MEASURING SYSTEM

    Directory of Open Access Journals (Sweden)

    C. B. Patel

    2010-06-01

    Full Text Available During a vehicle development program, load data representing severe customer usage is required. The dilemma faced by a design engineer during the design process is that during the initial stage, only predicted loads estimated from historical targets are available, whereas the actual loads are available only at the fag end of the process. At the same time, changes required, if any, are easier and inexpensive during the initial stages of the design process whereas they are extremely costly in the latter stages of the process. The use of road profiles and vehicle models to predict the load acting on the whole vehicle is currently being researched. This work hinges on the ability to accurately measure road profiles. The objective of the work is to develop an algorithm, using MATLAB Simulink software, to convert the input signals into measured road profile. The algorithm is checked by the MATLAB Simulink 4 degrees of freedom half car model. To make the whole Simulink model more realistic, accelerometer and laser sensor properties are introduced. The present work contains the simulation of the mentioned algorithm with a half car model and studies the results in distance, time, and the frequency domain.

  19. Further Examining Berry's Model: The Applicability of Latent Profile Analysis to Acculturation

    Science.gov (United States)

    Fox, Rina S.; Merz, Erin L.; Solórzano, Martha T.; Roesch, Scott C.

    2013-01-01

    This study used latent profile analysis (LPA) to identify acculturation profiles. A three-profile solution fit the data best, and comparisons on demographic and psychosocial outcomes as a function of profile yielded expected results. The findings support using LPA as a parsimonious way to model acculturation without anticipating profiles in…

  20. Further Examining Berry's Model: The Applicability of Latent Profile Analysis to Acculturation

    Science.gov (United States)

    Fox, Rina S.; Merz, Erin L.; Solórzano, Martha T.; Roesch, Scott C.

    2013-01-01

    This study used latent profile analysis (LPA) to identify acculturation profiles. A three-profile solution fit the data best, and comparisons on demographic and psychosocial outcomes as a function of profile yielded expected results. The findings support using LPA as a parsimonious way to model acculturation without anticipating profiles in…

  1. Further Examining Berry's Model: The Applicability of Latent Profile Analysis to Acculturation

    Science.gov (United States)

    Fox, Rina S.; Merz, Erin L.; Solórzano, Martha T.; Roesch, Scott C.

    2013-01-01

    This study used latent profile analysis (LPA) to identify acculturation profiles. A three-profile solution fit the data best, and comparisons on demographic and psychosocial outcomes as a function of profile yielded expected results. The findings support using LPA as a parsimonious way to model acculturation without anticipating profiles in…

  2. Looking into the inner black hole accretion disc with relativistic models of iron line

    CERN Document Server

    Svoboda, Jiri

    2010-01-01

    We discuss black hole spin measurements employing the relativistic iron line profiles in the X-ray domain. We investigate the iron line band for two representative sources -- MCG -6-30-15 (active galaxy) and GX 339-4 (X-ray binary). We compare two models of the broad iron line, LAOR and KYRLINE. We realise that the spin is currently determined entirely from the position of the marginally stable orbit while the effect of the spin on the overall line shape would be resolvable with higher resolution X-ray missions. We show that the precision of the spin measurements depends on an unknown angular distribution of the disc emission. We study how sensitive the spin determination is to the assumptions about the intrinsic angular distribution of the emitted photons. We find that the uncertainty of the directional emission distribution translates to 20% uncertainty in the determination of the radius of marginally stable orbit. We perform radiation transfer computations of an X-ray irradiated disc atmosphere (NOAR code)...

  3. A simple disc wind model for broad absorption line quasars

    Science.gov (United States)

    Higginbottom, N.; Knigge, C.; Long, K. S.; Sim, S. A.; Matthews, J. H.

    2013-12-01

    Approximately 20 per cent of quasi-stellar objects (QSOs) exhibit broad, blue-shifted absorption lines in their ultraviolet spectra. Such features provide clear evidence for significant outflows from these systems, most likely in the form of accretion disc winds. These winds may represent the `quasar' mode of feedback that is often invoked in galaxy formation/evolution models, and they are also key to unification scenarios for active galactic nuclei (AGN) and QSOs. To test these ideas, we construct a simple benchmark model of an equatorial, biconical accretion disc wind in a QSO and use a Monte Carlo ionization/radiative transfer code to calculate the ultraviolet spectra as a function of viewing angle. We find that for plausible outflow parameters, sightlines looking directly into the wind cone do produce broad, blue-shifted absorption features in the transitions typically seen in broad absorption line (BAL) QSOs. However, our benchmark model is intrinsically X-ray weak in order to prevent overionization of the outflow, and the wind does not yet produce collisionally excited line emission at the level observed in non-BAL QSOs. As a first step towards addressing these shortcomings, we discuss the sensitivity of our results to changes in the assumed X-ray luminosity and mass-loss rate, Ṁwind. In the context of our adopted geometry, Ṁwind ˜ Ṁacc is required in order to produce significant BAL features. The kinetic luminosity and momentum carried by such outflows would be sufficient to provide significant feedback.

  4. Reconstructing the velocity dispersion profiles from the line-of-sight kinematic data in disc galaxies

    Science.gov (United States)

    Marchuk, A. A.; Sotnikova, N. Y.

    2017-03-01

    We present a modification of the method for reconstructing the stellar velocity ellipsoid (SVE) in disc galaxies. Our version does not need any parametrization of the velocity dispersion profiles and uses only one assumption that the ratio σz/σR remains constant along the profile or along several pieces of the profile. The method was tested on two galaxies from the sample of other authors and for the first time applied to three lenticular galaxies NGC 1167, NGC 3245 and NGC 4150, as well as to one Sab galaxy NGC 338. We found that for galaxies with a high inclination (i >55° - 60°) it is difficult or rather impossible to extract the information about SVE, while for galaxies at an intermediate inclination the procedure of extracting is successful. For NGC 1167 we managed to reconstruct SVE, provided that the value of σz/σR is piecewise constant. We found σz/σR = 0.7 for the inner parts of the disc and σz/σR = 0.3 for the outskirts. We also obtained a rigid constraint on the value of the radial velocity dispersion σR for highly inclined galaxies, and tested the result using the asymmetric-drift equation, provided that the gas rotation curve is available.

  5. A Simple Disk Wind Model for Broad Absorption Line Quasars

    CERN Document Server

    Higginbottom, N; Long, K S; Sim, S A; Matthews, J H

    2013-01-01

    Approximately 20% of quasi-stellar objects (QSOs) exhibit broad, blue-shifted absorption lines in their ultraviolet spectra. Such features provide clear evidence for significant outflows from these systems, most likely in the form of accretion disk winds. These winds may represent the "quasar" mode of feedback that is often invoked in galaxy formation/evolution models, and they are also key to unification scenarios for active galactic nuclei (AGN) and QSOs. To test these ideas, we construct a simple benchmark model of an equatorial, biconical accretion disk wind in a QSO and use a Monte Carlo ionization/radiative transfer code to calculate the ultraviolet spectra as a function of viewing angle. We find that for plausible outflow parameters, sightlines looking directly into the wind cone do produce broad, blue-shifted absorption features in the transitions typically seen in broad absorption line QSOs. However, our benchmark model is intrinsically X-ray weak in order to prevent overionization of the outflow, an...

  6. Efficient material flow in mixed model assembly lines.

    Science.gov (United States)

    Alnahhal, Mohammed; Noche, Bernd

    2013-01-01

    In this study, material flow from decentralized supermarkets to stations in mixed model assembly lines using tow (tugger) trains is investigated. Train routing, scheduling, and loading problems are investigated in parallel to minimize the number of trains, variability in loading and in routes lengths, and line-side inventory holding costs. The general framework for solving these problems in parallel contains analytical equations, Dynamic Programming (DP), and Mixed Integer Programming (MIP). Matlab in conjunction with LP-solve software was used to formulate the problem. An example was presented to explain the idea. Results which were obtained in very short CPU time showed the effect of using time buffer among routes on the feasible space and on the optimal solution. Results also showed the effect of the objective, concerning reducing the variability in loading, on the results of routing, scheduling, and loading. Moreover, results showed the importance of considering the maximum line-side inventory beside the capacity of the train in the same time in finding the optimal solution.

  7. Generic model for line-of-sight analysis and calibration

    Science.gov (United States)

    Afik, Zvika; Shammas, A.; Schwartz, Roni; Gal, Eli

    1991-04-01

    1ariy electrooptical (E'O) systems incorporate an inaging sensor and a Line of Sight (LOS) deflection mirror. At a higher system level, such as for fire control or mIssile homing applications, these sensors are required to neasure angular target position very accurately. This work presents ar approach that has been developed for the modeling and calibration of such electrooptical systems. Using a generic system which includes a mirror mounted on a twoaxis LOS steering unit and an imaging sensor, a description of the mathematical model of the system is given here. This model may be used for system performance analyses as well as for developing various algorithms for the calculation of target angular position. The system model uses a number of calibration parameters such as gimbal nonorthogonality and other assembly and production errors. These are obtained from laboratory measurement results via a mathematical calibration model. We explain how the calibration model is developed from the system model. The method shown here can significantly reduce the number of computations and the look-up-table capacity needed in an operational system, as well as reducing the extent of laboratory calibrations usually required.

  8. A latent profile analysis of the Five Factor Model of personality: Modeling trait interactions.

    Science.gov (United States)

    Merz, Erin L; Roesch, Scott C

    2011-12-01

    Interactions among the dimensions of the Five Factor Model (FFM) have not typically been evaluated in mental health research, with the extant literature focusing on bivariate relationships with psychological constructs of interest. This study used latent profile analysis to mimic higher-order interactions to identify homogenous personality profiles using the FFM, and also examined relationships between resultant profiles and affect, self-esteem, depression, anxiety, and coping efficacy. Participants (N = 371) completed self-report and daily diary questionnaires. A 3-profile solution provided the best fit to the data; the profiles were characterized as well-adjusted, reserved, and excitable. The well-adjusted group reported better psychological functioning in validation analyses. The reserved and excitable groups differed on anxiety, with the excitable group reporting generally higher anxiety than the reserved group. Latent profile analysis may be a parsimonious way to model personality heterogeneity.

  9. Velocity profiles in idealized model of human respiratory tract

    Directory of Open Access Journals (Sweden)

    Jicha M.

    2013-04-01

    Full Text Available This article deals with numerical simulation focused on velocity profiles in idealized model of human upper airways during steady inspiration. Three r gimes of breathing were investigated: Resting condition, Deep breathing and Light activity which correspond to most common regimes used for experiments and simulations. Calculation was validated with experimental data given by Phase Doppler Anemometry performed on the model with same geometry. This comparison was made in multiple points which form one cross-section in trachea near first bifurcation of bronchial tree. Development of velocity profile in trachea during steady inspiration was discussed with respect for common phenomenon formed in trachea and for future research of transport of aerosol particles in human respiratory tract.

  10. MiRNA Profiles in Lymphoblastoid Cell Lines of Finnish Prostate Cancer Families.

    Directory of Open Access Journals (Sweden)

    Daniel Fischer

    Full Text Available Heritable factors are evidently involved in prostate cancer (PrCa carcinogenesis, but currently, genetic markers are not routinely used in screening or diagnostics of the disease. More precise information is needed for making treatment decisions to distinguish aggressive cases from indolent disease, for which heritable factors could be a useful tool. The genetic makeup of PrCa has only recently begun to be unravelled through large-scale genome-wide association studies (GWAS. The thus far identified Single Nucleotide Polymorphisms (SNPs explain, however, only a fraction of familial clustering. Moreover, the known risk SNPs are not associated with the clinical outcome of the disease, such as aggressive or metastasised disease, and therefore cannot be used to predict the prognosis. Annotating the SNPs with deep clinical data together with miRNA expression profiles can improve the understanding of the underlying mechanisms of different phenotypes of prostate cancer.In this study microRNA (miRNA profiles were studied as potential biomarkers to predict the disease outcome. The study subjects were from Finnish high risk prostate cancer families. To identify potential biomarkers we combined a novel non-parametrical test with an importance measure provided from a Random Forest classifier. This combination delivered a set of nine miRNAs that was able to separate cases from controls. The detected miRNA expression profiles could predict the development of the disease years before the actual PrCa diagnosis or detect the existence of other cancers in the studied individuals. Furthermore, using an expression Quantitative Trait Loci (eQTL analysis, regulatory SNPs for miRNA miR-483-3p that were also directly associated with PrCa were found.Based on our findings, we suggest that blood-based miRNA expression profiling can be used in the diagnosis and maybe even prognosis of the disease. In the future, miRNA profiling could possibly be used in targeted screening

  11. A model independent safeguard for unbinned Profile Likelihood

    CERN Document Server

    Priel, Nadav; Landsman, Hagar; Manfredini, Alessandro; Budnik, Ranny

    2016-01-01

    We present a general method to include residual un-modeled background shape uncertainties in profile likelihood based statistical tests for high energy physics and astroparticle physics counting experiments. This approach provides a simple and natural protection against undercoverage, thus lowering the chances of a false discovery or of an over constrained confidence interval, and allows a natural transition to unbinned space. Unbinned likelihood enhances the sensitivity and allows optimal usage of information for the data and the models. We show that the asymptotic behavior of the test statistic can be regained in cases where the model fails to describe the true background behavior, and present 1D and 2D case studies for model-driven and data-driven background models. The resulting penalty on sensitivities follows the actual discrepancy between the data and the models, and is asymptotically reduced to zero with increasing knowledge.

  12. Modeling of Aerosol Vertical Profiles Using GIS and Remote Sensing

    Directory of Open Access Journals (Sweden)

    Kwon Ho Lee

    2009-06-01

    Full Text Available The use of Geographic Information Systems (GIS and Remote Sensing (RS by climatologists, environmentalists and urban planners for three dimensional modeling and visualization of the landscape is well established. However no previous study has implemented these techniques for 3D modeling of atmospheric aerosols because air quality data is traditionally measured at ground points, or from satellite images, with no vertical dimension. This study presents a prototype for modeling and visualizing aerosol vertical profiles over a 3D urban landscape in Hong Kong. The method uses a newly developed technique for the derivation of aerosol vertical profiles from AERONET sunphotometer measurements and surface visibility data, and links these to a 3D urban model. This permits automated modeling and visualization of aerosol concentrations at different atmospheric levels over the urban landscape in near-real time. Since the GIS platform permits presentation of the aerosol vertical distribution in 3D, it can be related to the built environment of the city. Examples are given of the applications of the model, including diagnosis of the relative contribution of vehicle emissions to pollution levels in the city, based on increased near-surface concentrations around weekday rush-hour times. The ability to model changes in air quality and visibility from ground level to the top of tall buildings is also demonstrated, and this has implications for energy use and environmental policies for the tall mega-cities of the future.

  13. The upper atmosphere of the exoplanet HD209458b revealed by the sodium D lines: Temperature-pressure profile, ionization layer, and thermosphere

    CERN Document Server

    Vidal-Madjar, A; Etangs, A Lecavelier des; Ferlet, R; Desert, J -M; Hebrard, G; Boisse, I; Ehrenreich, D; Moutou, C

    2010-01-01

    A complete reassessment of the HST observations of the transits of the extrasolar planet HD209458b has provided a transmission spectrum of the atmosphere over a wide range of wavelengths. Analysis of the NaI absorption line profile has already shown that the sodium abundance has to drop by at least a factor of ten above a critical altitude. Here we analyze the profile in the deep core of the NaI doublet line from HST and high-resolution ground-based spectra to further constrain the vertical structure of the HD209458b atmosphere. With a wavelength-dependent cross section that spans more than 5 orders of magnitude, we use the absorption signature of the NaI doublet as an atmospheric probe. The NaI transmission features are shown to sample the atmosphere of HD209458b over an altitude range of more than 6500km, corresponding to a pressure range of 14 scale heights spanning 1 millibar to 1e-9 bar pressures. By comparing the observations with a multi-layer model in which temperature is a free parameter at the resol...

  14. New model for gastroenteropancreatic large-cell neuroendocrine carcinoma: establishment of two clinically relevant cell lines.

    Directory of Open Access Journals (Sweden)

    Andreas Krieg

    Full Text Available Recently, a novel WHO-classification has been introduced that divided gastroenteropancreatic neuroendocrine neoplasms (GEP-NEN according to their proliferation index into G1- or G2-neuroendocrine tumors (NET and poorly differentiated small-cell or large-cell G3-neuroendocrine carcinomas (NEC. Our knowledge on primary NECs of the GEP-system is limited due to the rarity of these tumors and chemotherapeutic concepts of highly aggressive NEC do not provide convincing results. The aim of this study was to establish a reliable cell line model for NEC that could be helpful in identifying novel druggable molecular targets. Cell lines were established from liver (NEC-DUE1 or lymph node metastases (NEC-DUE2 from large cell NECs of the gastroesophageal junction and the large intestine, respectively. Morphological characteristics and expression of neuroendocrine markers were extensively analyzed. Chromosomal aberrations were mapped by array comparative genomic hybridization and DNA profiling was analyzed by DNA fingerprinting. In vitro and in vivo tumorigenicity was evaluated and the sensitivity against chemotherapeutic agents assessed. Both cell lines exhibited typical morphological and molecular features of large cell NEC. In vitro and in vivo experiments demonstrated that both cell lines retained their malignant properties. Whereas NEC-DUE1 and -DUE2 were resistant to chemotherapeutic drugs such as cisplatin, etoposide and oxaliplatin, a high sensitivity to 5-fluorouracil was observed for the NEC-DUE1 cell line. Taken together, we established and characterized the first GEP large-cell NEC cell lines that might serve as a helpful tool not only to understand the biology of these tumors, but also to establish novel targeted therapies in a preclinical setup.

  15. Ionospheric topside models compared with experimental electron density profiles

    Directory of Open Access Journals (Sweden)

    S. M. Radicella

    2005-06-01

    Full Text Available Recently an increasing number of topside electron density profiles has been made available to the scientific community on the Internet. These data are important for ionospheric modeling purposes, since the experimental information on the electron density above the ionosphere maximum of ionization is very scarce. The present work compares NeQuick and IRI models with the topside electron density profiles available in the databases of the ISIS2, IK19 and Cosmos 1809 satellites. Experimental electron content from the F2 peak up to satellite height and electron densities at fixed heights above the peak have been compared under a wide range of different conditions. The analysis performed points out the behavior of the models and the improvements needed to be assessed to have a better reproduction of the experimental results. NeQuick topside is a modified Epstein layer, with thickness parameter determined by an empirical relation. It appears that its performance is strongly affected by this parameter, indicating the need for improvements of its formulation. IRI topside is based on Booker's approach to consider two parts with constant height gradients. It appears that this formulation leads to an overestimation of the electron density in the upper part of the profiles, and overestimation of TEC.

  16. Profiling flavonoid cytotoxicity in human breast cancer cell lines: determination of structure-function relationships.

    Science.gov (United States)

    Yadegarynia, Sina; Pham, Anh; Ng, Alex; Nguyen, Duong; Lialiutska, Tetiana; Bortolazzo, Anthony; Sivryuk, Valentin; Bremer, Martina; White, J Brandon

    2014-05-01

    Flavonoids have been shown to be cytotoxic to cancer cells. However, the mechanism of cytotoxicity has not been clearly defined. It has previously been reported that HER2/ERBB2, the estrogen receptor, progesterone receptor, and p53 were required for flavonoid induced cytotoxicity in breast cancer cell lines. We have used a panel of breast cancer cell lines, known to contain as well as be deficient in these signaling pathways, to screen fourteen different flavonoids. Comparing the cytotoxicity for all flavonoids allows us to determine if a structure-functional relationship exists between cytotoxicity and flavonoid, and if a particular signaling pathway is required for cytotoxicity. We show that several flavonoids are cytotoxic to all cell lines including primary mammary epithelial cells tested. The cytotoxic flavonoids are also able to inhibit Mitochondrial Outer Membrane Permeability while at the same time stimulate ATP levels whereas the non-cytotoxic flavonoids are not able to do this. We also show that both cytotoxic and non-cytotoxic flavonoids can transverse the cell membrane to enter MDA-MB-231 cells at different levels. Finally, all flavonoids regardless of their cytotoxicity were able to induce some form of cell cycle arrest. We conclude that for flavonoids to be strongly cytotoxic, they must possess the 2,3-double bond in the C-ring and we believe the cytotoxicity occurs through mitochondrial poisoning in both cancer and normal cells.

  17. Genomic profiling in CEPH cell lines distinguishes between the camptothecins and indenoisoquinolines.

    Science.gov (United States)

    Watson, Venita Gresham; Hardison, Nicholas E; Harris, Tyndall; Motsinger-Reif, Alison; McLeod, Howard L

    2011-10-01

    We have attempted to use a familial genetics strategy to study mechanisms of topoisomerase 1 (Top1) inhibition. Investigations have steadily been chipping away at the pathways involved in cellular response following Top1 inhibition for more than 20 years. Our system-wide approach, which phenotypes a collection of genotyped human cell lines for sensitivity to compounds and interrogates all genes and molecular pathways simultaneously. Previously, we characterized the in vitro sensitivity of 15 families of Centre d'Etude Polymorphisme Humain (CEPH) cell lines (n = 142) to 9 camptothecin analogues. Linkage analysis revealed a pattern of 7 quantitative trait loci (QTL) shared by all of the camptothecins. To identify which, if any, QTLs are related to the general mechanism of Top1 inhibition or should be considered camptothecin specific, we characterized the in vitro sensitivity of the same panel of CEPH cell lines to the indenisoquinolones, a structurally distinct class of Top1 inhibitors. Four QTLs on chromosomes 1, 5, 11, and 16 were shared by both the camptothecins and the indenoisoquinolines and are considered associated with the general mechanism of Top1 inhibition. The remaining 3 QTLs (chromosomes 6 and 20) are considered specific to camptothecin-induced cytotoxicity. Finally, 8 QTLs were identified, which were unique to the indenoisoquinolines.

  18. An Abel transform for deriving line-of-sight wind profiles from LEO-LEO infrared laser occultation measurements

    Science.gov (United States)

    Syndergaard, S.; Kirchengast, G.

    2016-03-01

    We have developed a formula for the retrieval of the line-of-sight (l.o.s.) wind speed from future low Earth orbit (LEO) satellite-to-satellite infrared laser occultation measurements. The formula involves an Abelian integral transform akin to the Abel transform widely used for deriving refractive index from bending angle in Global Navigation Satellite System radio occultation measurements. Besides the Abelian integral transform, the formula is derived from a truncated series expansion of the volume absorption coefficient as a function of frequency and includes a simple absorption-line-asymmetry correction term. A first-order formulation (referred to as the standard formula) is complemented by higher-order terms that can be used for high-accuracy computations. Under the assumptions of spherical symmetry and perfect knowledge of spectroscopy, the residual l.o.s. wind error from using the standard formula rather than the high-accuracy formula is assessed to be small compared to that anticipated from measurement errors in a real experiment. Applying the new formula just in standard form to future infrared laser transmission profiles would therefore enable the retrieval of l.o.s. stratospheric wind profiles with an accuracy limited mainly by measurement errors, residual spectroscopic errors, and deviations from spherical symmetry.

  19. Propagation model for non-line-of-sight ultraviolet communication

    Science.gov (United States)

    Luo, Yi-xue; Tang, Xin-yi

    2013-08-01

    Scattering deflects the ultraviolet ray, and makes it possible to bypass the obstacles between two blocked nodes. To investigate the channel characteristics of this kind of link, models have been developed, and most of them are based on coplanar geometry. Non-coplanar geometry, however, is unavoidable in most actual application. To make sure the influences of this factor, a universal model which describes the channel characteristics of Non-Line-Of-Sight (NLOS) Ultraviolet communication for non-coplanar geometry is developed in this paper. On the basis of classical single-scatter model, this model mainly estimates the impulse response and the pass loss with the transmitter and the receiver cone pointed in arbitrary directions. There are three major contributions in the paper. Firstly, classical single-scatter model and the differences effective scattering volume between coplanar geometry and non-coplanar geometry were described. Trigonometry and optimization techniques were proposed to overcome the restriction that the transmitter and the receiver cone axes lie in the same plane; secondly, a Monte-Carlo (MC) model was constructed to verify the single scatter model; finally numerical simulations and analysis were presented. Numerical simulation shows that the deflection of the transmission or the reception cones(α􀭲, α􀭰) decreases the signal, this decrease is slight under small deflection, and becomes more serious as deflection increases, finally remarkable when the deflection reaches a threshold. The result shows that a positive correlation exists between the threshold and the source divergence, which means that large source divergence gives better tolerability of the off-axis angle, but worse pulse width. In addition, the influence of deflection can be reduced signally by deflecting the two cones in the same side.MC model draws the similar conclusion approximately. Compared with other models, this model releases the restriction that the

  20. Correlation of antinuclear antibody immunofluorescence patterns with immune profile using line immunoassay in the Indian scenario

    Directory of Open Access Journals (Sweden)

    Sebastian Wendy

    2010-07-01

    Full Text Available Background: Immunity status, individual response to disease and types of antibodies produced are well known to vary from person to person, place to place and probably from population to population. A broad spectrum of specific auto antibodies that have so far been associated with specific rheumatic diseases, as noted in Western literature, has been well taken as a reference standard all over the world. There is neither research work nor any data correlating the auto antibodies and their antinuclear antibody (ANA patterns with the immunoprofile in the Indian population to date. Aims: To understand a definite association between ANA patterns and specific antibodies in the serum in the Indian study population and to document similarities / differences with the West. Settings and Design: This prospective and retrospective double blind study was undertaken on the South Indian population referred for ANA testing by Indirect Immunofluorescence method and by immunoline methods. Materials and Methods: Serum samples of patients from a random South Indian population who sought medical help for rheumatic disease were subjected for ANA testing by indirect immunofluorescence (IIF method and line immunoassay during the study period of 27 months. Serum samples were processed in dilution of 1:100 using HEp - 2010 / liver biochip (Monkey (EUROIMMUN AG. The serum samples which were further processed for line immunoassay were treated in 1:100 dilution on nylon strips coated with recombinant and purified antigens as discrete lines with plastic backing (EUROIMMUN AG coated with antigens nRNP / Sm, Sm, SSA, Ro-52, SSB, Scl-70, PM-Scl, PCNA, Jo-1, CENP-B, dsDNA, nucleosomes, histones, ribosomal protein-P, anti-mitochondrial antibodies (AMA-M2 along with a control band. The analysis was done by comparing the intensity of the reaction with positive control line by image analysis. Results: The antinuclear antibody indirect immunofluorescence (ANA - IIF patterns obtained

  1. Evolution of CO lines in time-dependent models of protostellar disk formation

    CERN Document Server

    Harsono, Daniel; Bruderer, Simon; van Dishoeck, Ewine F; Kristensen, Lars E

    2013-01-01

    (Abridged) Star and planet formation theories predict an evolution in the density, temperature, and velocity structure as the envelope collapses and forms an accretion disk. The aim of this work is to model the evolution of the molecular excitation, line profiles, and related observables during low-mass star formation. Specifically, the signatures of disks during the deeply embedded stage are investigated. Semi-analytic 2D axisymmetric models have been used to describe the evolution of the density, stellar mass, and luminosity from the pre-stellar to the T-Tauri phase. A full radiative transfer calculation is carried out to accurately determine the time-dependent dust temperatures and CO abundance structure. We present non-LTE near-IR, FIR, and submm lines of CO have been simulated at a number of time steps. In contrast to the dust temperature, the CO excitation temperature derived from submm/FIR lines does not vary during the protostellar evolution, consistent with C18O observations obtained with Herschel an...

  2. Modeling the initial contact line dynamics of dewetting bubbles

    Science.gov (United States)

    Menesses, Mark; Laurent, Matthieu; Bird, James

    2016-11-01

    When a rising bubble comes to rest beneath a solid horizontal surface, the resulting liquid film dewets to minimize the total free energy of the three phase system. For partially wetting surfaces, the presence of the contact angle yields dynamics which are assumed to be governed by viscous effects. In contrast, the early-time dynamics for drops spreading on partially wetting surfaces are dominated by inertial effects. Motivated by the discrepancy between these two systems, we conduct experiments on dewetting bubbles and find that the short-time dynamics fail to obey purely viscous or inertial scalings. We draw from previously proposed dewetting and spreading models to develop a new model that can rationalize the anomalous scalings that we observe. Our results suggest that the speed that a bubble adheres to a partially wetting surface is set by an interplay of capillary waves and contact line motion. We acknowledge support from ONR, Saint-Gobain, and NSF GRFP.

  3. COMPLEX PROGRAMS FOR MODELING HIGHWAY: PARK, PROFILE AND COMPOSITION

    Directory of Open Access Journals (Sweden)

    M. Iu. Smirnov

    2014-01-01

    Full Text Available The main part of developing computer-aided design of roads are simulation systems to see the road in action. Modeling of the functioning of the road in such a simulation system - this test road design in the computer. This article describes three modules: PARK, PROFILE, COMPOSITION and comprising a set of process simulation programs functioning road. A significant increase in the accuracy of simulation results provides software parks established normative reference database of technical and economic parameters of vehicles belonging to the stream. Completeness framework allows continuous adjustment and constant up-dating of the parameters types of cars in different scales calculation excludes construction and operating costs in justifying economic calculations optimality design solutions and increases the reliability of evaluating the effectiveness of capital investments in the construction and reconstruction of roads. Optimization of the design solutions in general, as a single continuous sequence of combinations of elements contributes to road profile program that analyzes the geometric elements of the plan, longitudinal section, compressing the geometry information of the way for the subsequent modeling of the functioning of the road. Program PROFILE (and built on its basis BASIS program, PROFILE is a nexus between the projecting programs and programs that simulate traffic. Transport and road performance computer modeled for a particular stream of automobile. Technical and economic parameters of vehicles belonging to the flow (up to 20, which is sufficient for practical and research tasks and their percentage in the flow of the program selects COMPOSITION regulatory reference framework articulated earlier PARK module and writes them to a working file for their subsequent use module RIDE.

  4. Atmospheric profiling via satellite to satellite occultations near water and ozone absorption lines for weather and climate

    Science.gov (United States)

    Kursinski, E. R.; Ward, D.; Otarola, A. C.; McGhee, J.; Stovern, M.; Sammler, K.; Reed, H.; Erickson, D.; McCormick, C.; Griggs, E.

    2016-05-01

    Significantly reducing weather and climate prediction uncertainty requires global observations with substantially higher information content than present observations provide. While GPS occultations have provided a major advance, GPS observations of the atmosphere are limited by wavelengths chosen specifically to minimize interaction with the atmosphere. Significantly more information can be obtained via satellite to satellite occultations made at wavelengths chosen specifically to characterize the atmosphere. Here we describe such a system that will probe cm- and mmwavelength water vapor absorption lines called the Active Temperature, Ozone and Moisture Microwave Spectrometer (ATOMMS). Profiling both the speed and absorption of light enables ATOMMS to profile temperature, pressure and humidity simultaneously, which GPS occultations cannot do, as well as profile clouds and turbulence. We summarize the ATOMMS concept and its theoretical performance. We describe field measurements made with a prototype ATOMMS instrument and several important capabilities demonstrated with those ground based measurements including retrieving temporal variations in path-averaged water vapor to 1%, in clear, cloudy and rainy conditions, up to optical depths of 17, remotely sensing turbulence and determining rain rates. We conclude with a vision of a future ATOMMS low Earth orbiting satellite constellation designed to take advantage of synergies between observational needs for weather and climate, ATOMMS unprecedented orbital remote sensing capabilities and recent cubesat technological innovations that enable a constellation of dozens of very small spacecraft to achieve many critical, but as yet unfulfilled, monitoring and forecasting needs.

  5. Characterization of the glycosylation profile of the human breast cancer cell line, MDA-231, and a bone colonizing variant.

    Science.gov (United States)

    Carcel-Trullols, Jaime; Stanley, Joseph S; Saha, Rinku; Shaaf, Saeid; Bendre, Manali S; Monzavi-Karbassi, Behjatolah; Suva, Larry J; Kieber-Emmons, Thomas

    2006-05-01

    The mechanisms that guide organ-specific metastases are not fully established. The aberrant expression of carbohydrates may play a fundamental role in defining the molecular mechanisms for metastases to distant organs and facilitate positive interactions within the target organ. The purpose of the present study was to determine the glycomic profile of a variant of the MDA-MB-231 breast cancer cell line that colonizes the bone and to ascribe mechanistic functions mediated by carbohydrates that might correlate with clinical bone metastases. The carbohydrate expression profiles of osteolytic MDA-MET breast cancer cells and non-osteolytic parental MDA-MB-231 cells were determined. MDA-MET cells were derived from MDA-MB-231 cells by in vivo selection of metastatic bone lesions following intracardiac inoculation. The two related breast cancer cell lines expressed distinct carbohydrate profiles; MDA-MET cells displayed an increased expression of alpha (2,6) linked sialic acid, N-beta1-6 GlcNAc, and sialylated Lewis-A antigen, and decreased expression of Galbeta1,3GalNAc as detected using a combination of lectins and anti-carbohydrate antibodies. Microarray analysis demonstrated an increased expression of glycosyltransferase genes, correlative for the distinct glycomic phenotype. The altered glycomic phenotypes of MDA-MET cells include effects on the differential binding to bone marrow endothelial cells, enhanced ECM binding and an increase in invasive potential. These data suggest that the glycomic phenotype of MDA-MET cells is associated with a select set of accumulated functions that collectively impact on the bone metastases and bone colonization capacity of breast cancer cells.

  6. A multi-model analysis of vertical ozone profiles

    Directory of Open Access Journals (Sweden)

    J. E. Jonson

    2010-06-01

    Full Text Available A multi-model study of the long-range transport of ozone and its precursors from major anthropogenic source regions was coordinated by the Task Force on Hemispheric Transport of Air Pollution (TF HTAP under the Convention on Long-range Transboundary Air Pollution (LRTAP. Vertical profiles of ozone at 12-h intervals from 2001 are available from twelve of the models contributing to this study and are compared here with observed profiles from ozonesondes. The contributions from each major source region are analysed for selected sondes, and this analysis is supplemented by retroplume calculations using the FLEXPART Lagrangian particle dispersion model to provide insight into the origin of ozone transport events and the cause of differences between the models and observations.

    In the boundary layer ozone levels are in general strongly affected by regional sources and sinks. With a considerably longer lifetime in the free troposphere, ozone here is to a much larger extent affected by processes on a larger scale such as intercontinental transport and exchange with the stratosphere. Such individual events are difficult to trace over several days or weeks of transport. This may explain why statistical relationships between models and ozonesonde measurements are far less satisfactory than shown in previous studies for surface measurements at all seasons. The lowest bias between model-calculated ozone profiles and the ozonesonde measurements is seen in the winter and autumn months. Following the increase in photochemical activity in the spring and summer months, the spread in model results increases, and the agreement between ozonesonde measurements and the individual models deteriorates further.

    At selected sites calculated contributions to ozone levels in the free troposphere from intercontinental transport are shown. Intercontinental transport is identified based on differences in model calculations with unperturbed emissions and

  7. Simulation study for measurement of horizontal wind profiles in the polar stratosphere and mesosphere using ground-based observations of ozone and carbon monoxide lines in the 230-250 GHz region

    Science.gov (United States)

    Newnham, David A.; Ford, George P.; Moffat-Griffin, Tracy; Pumphrey, Hugh C.

    2016-07-01

    Meteorological and atmospheric models are being extended up to 80 km altitude but there are very few observing techniques that can measure stratospheric-mesospheric winds at altitudes between 20 and 80 km to verify model datasets. Here we demonstrate the feasibility of horizontal wind profile measurements using ground-based passive millimetre-wave spectroradiometric observations of ozone lines centred at 231.28, 249.79, and 249.96 GHz. Vertical profiles of horizontal winds are retrieved from forward and inverse modelling simulations of the line-of-sight Doppler-shifted atmospheric emission lines above Halley station (75°37' S, 26°14' W), Antarctica. For a radiometer with a system temperature of 1400 K and 30 kHz spectral resolution observing the ozone 231.28 GHz line we estimate that 12 h zonal and meridional wind profiles could be determined over the altitude range 25-74 km in winter, and 28-66 km in summer. Height-dependent measurement uncertainties are in the range 3-8 m s-1 and vertical resolution ˜ 8-16 km. Under optimum observing conditions at Halley a temporal resolution of 1.5 h for measuring either zonal or meridional winds is possible, reducing to 0.5 h for a radiometer with a 700 K system temperature. Combining observations of the 231.28 GHz ozone line and the 230.54 GHz carbon monoxide line gives additional altitude coverage at 85 ± 12 km. The effects of clear-sky seasonal mean winter/summer conditions, zenith angle of the received atmospheric emission, and spectrometer frequency resolution on the altitude coverage, measurement uncertainty, and height and time resolution of the retrieved wind profiles have been determined.

  8. Actuator line modeling of vertical-axis turbines

    CERN Document Server

    Bachant, Peter; Wosnik, Martin

    2016-01-01

    To bridge the gap between high and low fidelity numerical modeling tools for vertical-axis (or cross-flow) turbines (VATs or CFTs), an actuator line model (ALM) was developed and validated for both a high and a medium solidity vertical-axis turbine at rotor diameter Reynolds numbers $Re_D \\sim 10^6$. The ALM is a hybridization of classical blade element theory with Navier--Stokes based flow models, and in this study both $k$--$\\epsilon$ Reynolds-averaged Navier--Stokes (RANS) and Smagorinsky large eddy simulation (LES) turbulence models were tested. The RANS models were able to be run on coarse grids while still providing good convergence behavior in terms of the mean power coefficient, and also approximately four orders of magnitude reduction in computational expense compared with 3-D blade-resolved RANS simulations. Submodels for dynamic stall, end effects, added mass, and flow curvature were implemented, resulting in reasonable performance predictions for the high solidity rotor, more discrepancies for the...

  9. In Situ Characterizing Membrane Lipid Phenotype of Human Lung Cancer Cell Lines Using Mass Spectrometry Profiling

    OpenAIRE

    2016-01-01

    Abnormal lipid metabolisms are closely associated with cancers. In this study, mass spectrometry was employed to in situ investigate the associations of membrane lipid phenotypes of six human lung cancer cell lines (i.e., A549, H1650, H1975 from adenocarcinoma, H157 and H1703 from squamous cell carcinomas, and H460 from a large cell carcinoma) with cancer cell types and finally total 230 lipids were detected. Based these 230 lipids, partial least-square discriminant analysis indicated that fi...

  10. Active Strokes: Coherent Line Stylization for Animated 3D Models

    OpenAIRE

    Bénard, Pierre; Jingwan, Lu; Cole, Forrester; Finkelstein, Adam; Thollot, Joëlle

    2012-01-01

    Paper session 8: Lines, strokes and textures in 3D; International audience; This paper presents a method for creating coherently animated line drawings that include strong abstraction and stylization effects. These effects are achieved with active strokes: 2D contours that approximate and track the lines of an animated 3D scene. Active strokes perform two functions: they connect and smooth unorganized line samples, and they carry coherent parameterization to support stylized rendering. Line s...

  11. Suppression subtractive hybridization profiles of radial growth phase and metastatic melanoma cell lines reveal novel potential targets

    Directory of Open Access Journals (Sweden)

    Espreafico Enilza M

    2008-01-01

    Full Text Available Abstract Background Melanoma progression occurs through three major stages: radial growth phase (RGP, confined to the epidermis; vertical growth phase (VGP, when the tumor has invaded into the dermis; and metastasis. In this work, we used suppression subtractive hybridization (SSH to investigate the molecular signature of melanoma progression, by comparing a group of metastatic cell lines with an RGP-like cell line showing characteristics of early neoplastic lesions including expression of the metastasis suppressor KISS1, lack of αvβ3-integrin and low levels of RHOC. Methods Two subtracted cDNA collections were obtained, one (RGP library by subtracting the RGP cell line (WM1552C cDNA from a cDNA pool from four metastatic cell lines (WM9, WM852, 1205Lu and WM1617, and the other (Met library by the reverse subtraction. Clones were sequenced and annotated, and expression validation was done by Northern blot and RT-PCR. Gene Ontology annotation and searches in large-scale melanoma expression studies were done for the genes identified. Results We identified 367 clones from the RGP library and 386 from the Met library, of which 351 and 368, respectively, match human mRNA sequences, representing 288 and 217 annotated genes. We confirmed the differential expression of all genes selected for validation. In the Met library, we found an enrichment of genes in the growth factors/receptor, adhesion and motility categories whereas in the RGP library, enriched categories were nucleotide biosynthesis, DNA packing/repair, and macromolecular/vesicular trafficking. Interestingly, 19% of the genes from the RGP library map to chromosome 1 against 4% of the ones from Met library. Conclusion This study identifies two populations of genes differentially expressed between melanoma cell lines from two tumor stages and suggests that these sets of genes represent profiles of less aggressive versus metastatic melanomas. A search for expression profiles of melanoma in

  12. Modeling and Retrieval of Cometary Gas Spectral Lines for Rosetta-MIRO Observations of Comet 67P Churyumov-Gerasimenko

    Science.gov (United States)

    von Allmen, P. A.; Lee, S.; Gulkis, S.; Hofstadter, M. D.; Kamp, L.

    2012-12-01

    The Microwave Instrument for the Rosetta Orbiter (MIRO), on board the ESA Rosetta spacecraft, will observe spectral lines of water, carbon monoxide, ammonia, and methanol at submillimeter wavelengths from the coma of Comet 67P Churyumov-Gerasimenko. For planning and interpretation of the MIRO observations, we develop forward models, which simulate observations of the cometary gas spectral lines from a given comet and coma condition, and retrieval models, which retrieve cometary parameters from the observed lines. This paper reports the forward and retrieval models developed for the Rosetta-MIRO observations and the applications of the models to observation planning and interpretation. The forward models involve multiple sequential steps starting from thermophysical modeling of the comet nucleus, to coma profile modeling, to molecular level distribution modeling, and to radiative transfer calculations. The thermophysical model provides the near surface temperature, gas temperature and velocity distribution, and outgassing rate to the coma profile modeling, which in turn provides the gas temperature, velocity, and density distribution in the coma. The molecular level distribution modeling uses the coma profile result to calculate the molecular level distribution in the coma. Finally, the radiative transfer model simulates MIRO spectral lines for a given viewing condition using the level distribution and coma profile results. The main retrieval problems for the MIRO observations are (1) to retrieve coma profiles along a single line of sight from measured spectral lines, (2) to determine a three-dimensional coma model from profiles along several lines of sights, (3) to infer nucleus surface conditions (sub-surface layer porosity and mechanical structure, jet formation, sublimation process, gas transport in the sub-surface layer) from the retrieved coma conditions. We develop two approaches for the retrieval problems. One is a fast analytical solution which makes

  13. A multi-model analysis of vertical ozone profiles

    Directory of Open Access Journals (Sweden)

    D. W. Tarasick

    2009-12-01

    Full Text Available A multi-model study of the long-range transport of ozone and its precursors from major anthropogenic source regions was coordinated by the Task Force on Hemispheric Transport of Air Pollution (TF HTAP under the Convention on Long-range Transboundary Air Pollution (LRTAP. Vertical profiles of ozone at 12-h intervals in year 2001 are available from twelve of the models contributing to this study and are compared here with observed profiles from ozonesondes. The contributions from each major source region are analysed for selected sondes, and this analysis is supplemented by retroplume calculations using the FLEXPART Lagrangian particle dispersion model to provide insight into the origin of ozone transport events and the cause of differences between the models and observations.

    In the boundary layer ozone levels are in general strongly affected by regional sources and sinks. With a considerably longer lifetime in the free troposphere, ozone here is to a much larger extent affected by processes on a larger scale such as intercontinental transport and exchange with the stratosphere. Such individual events are difficult to trace over several days or weeks of transport. As a result statistical relationships between models and ozone sonde measurements are far less satisfactory than for surface measurements at all seasons. The lowest bias between model calculated ozone profiles and the ozone sonde measurements is seen in the winter and autumn months. Following the increase in photochemical activity in the spring and summer months the spread in model results increases and the agreement between ozone sonde measurements and the individual models deteriorates further.

    At selected sites calculated contributions to ozone levels in the free troposphere from intercontinental transport are presented. Intercontinental transport is identified based on differences in model calculations with unperturbed emissions and emissions reduced by 20% by

  14. High-cadence spectroscopy of M dwarfs - I. Analysis of systematic effects in HARPS-N line profile measurements on the bright binary GJ 725A+B

    Science.gov (United States)

    Berdiñas, Z. M.; Amado, P. J.; Anglada-Escudé, G.; Rodríguez-López, C.; Barnes, J.

    2016-07-01

    Understanding the sources of instrumental systematic noise is a must to improve the design of future spectrographs. In this study, we alternated observations of the well-suited pair of M-stars GJ 725A+B to delve into the sub-night High Accuracy Radial Velocity Planet Searcher for the Northern hemisphere (HARPS-N) response. Besides the possible presence of a low-mass planet orbiting GJ 725B, our observations reveal changes in the spectral energy distribution (SED) correlated with measurements of the width of the instrumental line profile and, to a lower degree, with the Doppler measurements. To study the origin of these effects, we searched for correlations among several quantities defined and measured on the spectra and on the acquisition images. We find that the changes in apparent SED are very likely related to flux losses at the fibre input. Further tests indicate that such flux losses do not seriously affect the shape of the instrumental point spread function of HARPS-N, but identify an inefficient fitting of the continuum as the most likely source of the systematic variability observed in the full width at half-maximum. This index, accounting for the HARPS-N cross-correlation profiles width, is often used to decorrelate Doppler time series. We show that the Doppler measurement obtained by a parametric least-squares fitting of the spectrum accounting for continuum variability is insensitive to changes in the slope of the SED, suggesting that forward modelling techniques to measure moments of the line profile are the optimal way to achieve higher accuracy. Remaining residual variability at ˜1 m s-1 suggests that for M-stars Doppler surveys the current noise floor still has an instrumental origin.

  15. Profiling polyphenols of two diploid strawberry (Fragaria vesca) inbred lines using UHPLC-HRMS(n.).

    Science.gov (United States)

    Sun, Jianghao; Liu, Xianjin; Yang, Tianbao; Slovin, Janet; Chen, Pei

    2014-03-01

    Phenolic compounds in the fruits of two diploid strawberries (Fragaria vesca f. semperflorens) inbred lines-Ruegen F7-4 (a red-fruited genotype) and YW5AF7 (a yellow-fruited genotype) were characterised using ultra-high-performance liquid chromatography coupled with tandem high-resolution mass spectrometry (UHPLC-HRMS(n)). The changes of anthocyanin composition during fruit development and between Ruegen F7-4 and YW5AF7 were studied. About 67 phenolic compounds, including taxifolin 3-O-arabinoside, glycosides of quercetin, kaempferol, cyanidin, pelargonidin, peonidin, ellagic acid derivatives, and other flavonols were identified in these two inbred lines. Compared to the regular octoploid strawberry, unique phenolic compounds were found in F. vesca fruits, such as taxifolin 3-O-arabinoside (both) and peonidin 3-O-malonylglucoside (Ruegen F7-4). The results provide the basis for comparative analysis of polyphenolic compounds in yellow and red diploid strawberries, as well as with the cultivated octoploid strawberries.

  16. Radiation pressure force emission line profiles and black hole mass in active galactic nuclei

    CERN Document Server

    Netzer, H

    2010-01-01

    We present a new analysis of the motion of broad line region (BLR) clouds in active galactic nuclei (AGNs) taking into account the combined influence of gravity and radiation pressure force. We calculate cloud orbits under a large range of conditions and include the effect of a changing column density as a function of location. The dependence of radiation pressure force on the level of ionization and the column density are accurately computed. The main results are: a. The mean cloud location r(BLR) and the line widths (FWHMs) are combined in such a way that the simple virial mass estimate, r{BLR} FWHM^2/G, gives a reasonable approximation to the black hole mass M even when radiation pressure force is important. The reason is that L/M rather than L is the main parameter affecting the planar cloud motion. b. Reproducing the observed mean radius, FWHM and intensity of H-beta and CIV 1549 requires at least two different populations of clouds. c. The cloud location is a function of both L^{1/2} and L/M. Given this...

  17. Protein Profile of Human Lung Squamous Carcinoma Cell Line NCI-H226

    Institute of Scientific and Technical Information of China (English)

    HAO ZHANG; NA LI; YUE CHEN; LING-YUN HUANG; YI-CHING WANG; GANG FANG; DA-CHENG HE; XUE-YUAN XIAO

    2007-01-01

    Objective To construct a database of human lung squamous carcinoma cell line NCI-H226 and to facilitate discovery of novel subtypes markers of lung cancer. Method Proteomic technique was used to analyze human lung squamous carcinoma cell line NCI-H226. The proteins of the NCI-H226 cells were separated by two-dimensional gel electrophoresis and identified by mass spectrometry. Results The results showed that a good reproducibility of the 2-D gel pattern was attained. The position deviation of matched spots among three 2-D gels was 1.95±0.53 mm in the isoelectric focusing direction,and 1.73±0.45 mm in the sodium dodecyl sulfate-polyacrylamide gel electrophoresis direction. One hundred and twenty-seven proteins, including enzymes, signal transduction proteins, structure proteins, transport proteins, etc. were characterized, of which, 29 identified proteins in NCI-H226 cells were reported for the first time to be involved in lung cancer carcinogenesis.Conclusion The information obtained from this study could provide some valuable clues for further study on the carcinogenetic mechanism of different types of lung cancer, and may help us to discover some potential subtype-specific biomarkers of lung cancer.

  18. Element-specific density profiles in interacting biomembrane models

    Science.gov (United States)

    Schneck, Emanuel; Rodriguez-Loureiro, Ignacio; Bertinetti, Luca; Marin, Egor; Novikov, Dmitri; Konovalov, Oleg; Gochev, Georgi

    2017-03-01

    Surface interactions involving biomembranes, such as cell–cell interactions or membrane contacts inside cells play important roles in numerous biological processes. Structural insight into the interacting surfaces is a prerequisite to understand the interaction characteristics as well as the underlying physical mechanisms. Here, we work with simplified planar experimental models of membrane surfaces, composed of lipids and lipopolymers. Their interaction is quantified in terms of pressure–distance curves using ellipsometry at controlled dehydrating (interaction) pressures. For selected pressures, their internal structure is investigated by standing-wave x-ray fluorescence (SWXF). This technique yields specific density profiles of the chemical elements P and S belonging to lipid headgroups and polymer chains, as well as counter-ion profiles for charged surfaces.

  19. Solitonic description of interface profiles in competition models

    CERN Document Server

    Azevedo, T; Menezes, J

    2014-01-01

    We consider the spatial patterns provided by mean field numerical simulations for two competing species. As all individuals have the same rate of mobility, reproduction and competition, interfaces of empty spaces separating domains of single species are formed by a spontaneous process of symmetry breaking. We construct a Lagrangian formalism for studying the static profile of such interfaces by means of a scalar field theory framework. We identify the number density of empty spaces created by the competition interactions with a function of the energy density in scalar field systems. We then present a potential with $Z_2$ symmetry, which leads to differential equations whose solitonic solutions describe interface profile. Finally, we compare the theoretical results with data from one-dimensional numerical simulation of the Lotka-Volterra equations and show that our model fits well the properties of interfaces.

  20. RAPTOR: Optimization, real-time simulation and control of the tokamak q profile evolution using a simplified transport model

    Science.gov (United States)

    Felici, Federico; Sauter, Olivier; Goodman, Timothy; Paley, James

    2010-11-01

    Control of the plasma current density and safety factor profile evolution in a tokamak is crucial for accessing advanced regimes. The evolution of the current density profile is steered by a combination of inductive voltage and auxiliary current drive actuators, and is nonlinearly coupled to the evolution of the (ion/electron) temperature and density profiles. Using appropriate simplifications, a model has been obtained which can be simulated on time scales faster than the tokamak discharge itself, but still retains the essential physics describing the nonlinear coupling between the profiles. This model, dubbed RAPTOR (Rapid Plasma Transport simulatOR) has been implemented in the new real-time control system on the TCV tokamak at CRPP, and can be used for real-time reconstruction and model-based control of the q profile. It can also be used off-line to determine optimal actuator trajectories in open loop simulations to steer the plasma profiles towards their required steady-state shapes while remaining within a constrained set of allowable profiles.

  1. Modelling positional uncertainty of line features by accounting for stochastic deviations from straight line segments

    NARCIS (Netherlands)

    Bruin, de S.

    2008-01-01

    The assessment of positional uncertainty in line and area features is often based on uncertainty in the coordinates of their elementary vertices which are assumed to be connected by straight lines. Such an approach disregards uncertainty caused by sampling and approximation of a curvilinear feature

  2. Modeling diurnal hormone profiles by hierarchical state space models.

    Science.gov (United States)

    Liu, Ziyue; Guo, Wensheng

    2015-10-30

    Adrenocorticotropic hormone (ACTH) diurnal patterns contain both smooth circadian rhythms and pulsatile activities. How to evaluate and compare them between different groups is a challenging statistical task. In particular, we are interested in testing (1) whether the smooth ACTH circadian rhythms in chronic fatigue syndrome and fibromyalgia patients differ from those in healthy controls and (2) whether the patterns of pulsatile activities are different. In this paper, a hierarchical state space model is proposed to extract these signals from noisy observations. The smooth circadian rhythms shared by a group of subjects are modeled by periodic smoothing splines. The subject level pulsatile activities are modeled by autoregressive processes. A functional random effect is adopted at the pair level to account for the matched pair design. Parameters are estimated by maximizing the marginal likelihood. Signals are extracted as posterior means. Computationally efficient Kalman filter algorithms are adopted for implementation. Application of the proposed model reveals that the smooth circadian rhythms are similar in the two groups but the pulsatile activities in patients are weaker than those in the healthy controls. Copyright © 2015 John Wiley & Sons, Ltd.

  3. Comparison of line-by-line and band models of near-IR methane absorption applied to outer planet atmospheres

    Science.gov (United States)

    Sromovsky, L. A.; Fry, P. M.; Boudon, V.; Campargue, A.; Nikitin, A.

    2012-03-01

    Recent improvements in high spectral resolution measurements of methane absorption at wavenumbers between 4800 cm-1 and 7919 cm-1 have greatly increased the number of lines with known lower state energies, the number of weak lines, and the number of lines observed at low temperatures (Campargue, A., Wang, L., Kassi, S., Mašát, M., Votava, O. [2010]. J. Quant. Spectrosc. Radiat. Trans. 111, 1141-1151; Campargue, A., Wang, L., Liu, A.W., Hu, S.M., Kassi, S. [2010]. Chem. Phys. 373, 203-210; Mondelain, D., Kassi, S., Wang, L.C. [2011]. Phys. Chem. Chem. Phys. 13, 7985-7996; Nikitin, A.V. et al. [2011a]. J. Mol. Spectrosc. 268, 93-106; Nikitin, A.V. et al. [2010]. J. Quant. Spectrosc. Radiat. Trans. 111, 2211-2224; Wang, L., Kassi, S., Campargue, A. [2010]. J. Quant. Spectrosc. Radiat. Trans. 111, 1130-1140; Wang, L., Kassi, S., Liu, A.W., Hu, S.M., Campargue, A. [2011]. J. Quant. Spectrosc. Radiat. Trans. 112, 937-951), making it possible to fit near-IR spectra of Titan using line-by-line calculations instead of band models (Bailey, J., Ahlsved, L., Meadows, V.S. [2011]. Icarus 213, 218-232; de Bergh, C. et al. [2011]. Planet. Space Sci. doi:10.1016/j.pss.2011.05.003). Using these new results, we compiled an improved line list relative that used by Bailey et al. by updating several spectral regions with either calculated or more recently measured line parameters, revising lower state energy estimates for lines lacking them, and adding room temperature lines to make the list applicable over a wider range of temperatures. We compared current band models with line-by-line calculations using this new line list, both to assess the behavior of band models, and to identify remaining issues with line-by-line calculations when applied to outer planet atmospheres and over a wider range of wavelengths. Comparisons were made for a selection of uniform paths representing outer planet conditions and for representative non-uniform paths within the atmospheres of Uranus, Saturn

  4. On-Line Core Thermal-Hydraulic Model Improvement

    Energy Technology Data Exchange (ETDEWEB)

    In, Wang Kee; Chun, Tae Hyun; Oh, Dong Seok; Shin, Chang Hwan; Hwang, Dae Hyun; Seo, Kyung Won

    2007-02-15

    The objective of this project is to implement a fast-running 4-channel based code CETOP-D in an advanced reactor core protection calculator system(RCOPS). The part required for the on-line calculation of DNBR were extracted from the source of the CETOP-D code based on analysis of the CETOP-D code. The CETOP-D code was revised to maintain the input and output variables which are the same as in CPC DNBR module. Since the DNBR module performs a complex calculation, it is divided into sub-modules per major calculation step. The functional design requirements for the DNBR module is documented and the values of the database(DB) constants were decided. This project also developed a Fortran module(BEST) of the RCOPS Fortran Simulator and a computer code RCOPS-SDNBR to independently calculate DNBR. A test was also conducted to verify the functional design and DB of thermal-hydraulic model which is necessary to calculate the DNBR on-line in RCOPS. The DNBR margin is expected to increase by 2%-3% once the CETOP-D code is used to calculate the RCOPS DNBR. It should be noted that the final DNBR margin improvement could be determined in the future based on overall uncertainty analysis of the RCOPS.

  5. Evaluation of the Actuator Line Model with coarse resolutions

    Science.gov (United States)

    Draper, M.; Usera, G.

    2015-06-01

    The aim of the present paper is to evaluate the Actuator Line Model (ALM) in spatial resolutions coarser than what is generally recommended, also using larger time steps. To accomplish this, the ALM has been implemented in the open source code caffa3d.MBRi and validated against experimental measurements of two wind tunnel campaigns (stand alone wind turbine and two wind turbines in line, case A and B respectively), taking into account two spatial resolutions: R/8 and R/15 (R is the rotor radius). A sensitivity analysis in case A was performed in order to get some insight into the influence of the smearing factor (3D Gaussian distribution) and time step size in power and thrust, as well as in the wake, without applying a tip loss correction factor (TLCF), for one tip speed ratio (TSR). It is concluded that as the smearing factor is larger or time step size is smaller the power is increased, but the velocity deficit is not as much affected. From this analysis, a smearing factor was obtained in order to calculate precisely the power coefficient for that TSR without applying TLCF. Results with this approach were compared with another simulation choosing a larger smearing factor and applying Prandtl's TLCF, for three values of TSR. It is found that applying the TLCF improves the power estimation and weakens the influence of the smearing factor. Finally, these 2 alternatives were tested in case B, confirming that conclusion.

  6. Low-Profile Fully-Printed Multifrequency Monopoles Loaded with Complementary Metamaterial Transmission Line

    Directory of Open Access Journals (Sweden)

    Xue Li

    2015-04-01

    Full Text Available The design of a new class of multifrequency monopoles by loading a set of resonant-type complementary metamaterial transmission lines (CMTL is firstly presented. Two types of CMTL elements are comprehensively explored: the former is the epsilon negative (ENG one by loading complementary split ring resonators (CSRRs with different configurations on the signal strip, whereas the latter is the double negative (DNG one by incorporating the CSRRs and capacitive gaps. In both cases, the CMTLs are considered with different number of unit cells. By cautiously controlling the geometrical parameters of element structure, five antenna prototypes coving different communication standards (GSM, UMTS, DMB and WiMAX are designed, fabricated and measured. Numerical and experimental results illustrate that the zeroth-order resonance frequencies of the ENG and DNG monopoles are in desirable consistency. Moreover, of all operating frequencies the antennas exhibit fairly good impedance matching performances better than -10dB and quasi-omnidirectional radiation patterns.

  7. Continuum and line modelling of discs around young stars. II. Line diagnostics for GASPS from the DENT grid

    Science.gov (United States)

    Kamp, I.; Woitke, P.; Pinte, C.; Tilling, I.; Thi, W.-F.; Menard, F.; Duchene, G.; Augereau, J.-C.

    2011-08-01

    Aims: We want to understand the chemistry and physics of discs on the basis of a large unbiased and statistically relevant grid of disc models. One of the main goals is to explore the diagnostic power of various gas emission lines and line ratios for deriving main disc parameters such as the gas mass. Methods: We explored the results of the DENT grid (Disk Evolution with Neat Theory) that consists of 300 000 disc models with 11 free parameters. Through a statistical analysis, we searched for correlations and trends in an effort to find tools for disc diagnostic. Results: All calculated quantities like species masses, temperatures, continuum, and line fluxes differ by several orders of magnitude across the entire parameter space. The broad distribution of these quantities as a function of input parameters shows the limitation of using a prototype T Tauri or Herbig Ae/Be disc model. The statistical analysis of the DENT grid shows that CO gas is rarely the dominant carbon reservoir in discs. Models with large inner radii (10 times the dust condensation radius) and/or shallow surface density gradients lack massive gas-phase water reservoirs. Also, 60% of the discs have gas temperatures averaged over the oxygen mass in the range between 15 and 70 K; the average gas temperatures for CO and O differ by less than a factor two. Our study of the observational diagnostics shows that the [C ii] 158 μm fine structure line flux is very sensitive to the stellar UV flux and presence of a UV excess, and that it traces the outer disc radius (Rout). In the submm, the CO low J rotational lines also trace Rout. Low [O i] 63/145 line ratios (line. This occurs mostly for massive non-flaring, settled disc models without UV excess. A combination of the [O i] 63 line and low J CO lines correlates with several disc properties, such as the average O i gas temperature in

  8. Polyphenolic Profile and Targeted Bioactivity of Methanolic Extracts from Mediterranean Ethnomedicinal Plants on Human Cancer Cell Lines

    Directory of Open Access Journals (Sweden)

    Antonino Pollio

    2016-03-01

    Full Text Available The methanol extracts of the aerial part of four ethnomedicinal plants of Mediterranean region, two non-seed vascular plants, Equisetum hyemale L. and Phyllitis scolopendrium (L. Newman, and two Spermatophyta, Juniperus communis L. (J. communis and Cotinus coggygria Scop. (C. coggygria, were screened against four human cells lines (A549, MCF7, TK6 and U937. Only the extracts of J. communis and C. coggygria showed marked cytotoxic effects, affecting both cell morphology and growth. A dose-dependent effect of these two extracts was also observed on the cell cycle distribution. Incubation of all the cell lines in a medium containing J. communis extract determined a remarkable accumulation of cells in the G2/M phase, whereas the C. coggygria extract induced a significant increase in the percentage of G1 cells. The novelty of our findings stands on the observation that the two extracts, consistently, elicited coherent effects on the cell cycle in four cell lines, independently from their phenotype, as two of them have epithelial origin and grow adherent and two are lymphoblastoid and grow in suspension. Even the expression profiles of several proteins regulating cell cycle progression and cell death were affected by both extracts. LC-MS investigation of methanol extract of C. coggygria led to the identification of twelve flavonoids (compounds 1–11, 19 and eight polyphenols derivatives (12–18, 20, while in J. communis extract, eight flavonoids (21–28, a α-ionone glycoside (29 and a lignin (30 were found. Although many of these compounds have interesting individual biological activities, their natural blends seem to exert specific effects on the proliferation of cell lines either growing adherent or in suspension, suggesting potential use in fighting cancer.

  9. Recovery of acetylene absorption line profile basing on tunable diode laser spectroscopy with intensity modulation and photoacoustic spectroscopy

    Science.gov (United States)

    Li, Li; Thursby, Graham; Stewart, George; Arsad, Norhana; Uttamchandani, Deepak; Culshaw, Brian; Wang, Yiding

    2010-04-01

    A novel and direct absorption line recovery technique based on tunable diode laser spectroscopy with intensity modulation is presented. Photoacoustic spectroscopy is applied for high sensitivity, zero background and efficient acoustic enhancement at a low modulation frequency. A micro-electromechanical systems (MEMS) mirror driven by an electrothermal actuator is used for generating laser intensity modulation (without wavelength modulation) through the external reflection. The MEMS mirror with 10μm thick structure material layer and 100nm thick gold coating is formed as a circular mirror of 2mm diameter attached to an electrothermal actuator and is fabricated on a chip that is wire-bonded and placed on a PCB holder. Low modulation frequency is adopted (since the resonant frequencies of the photoacoustic gas cell and the electrothermal actuator are different) and intrinsic high signal amplitude characteristics in low frequency region achieved from measured frequency responses for the MEMS mirror and the gas cell. Based on the property of photoacoustic spectroscopy and Beer's law that detectable sensitivity is a function of input laser intensity in the case of constant gas concentration and laser path length, a Keopsys erbium doped fibre amplifier (EDFA) with opto-communication C band and high output power up to 1W is chosen to increase the laser power. High modulation depth is achieved through adjusting the MEMS mirror's reflection position and driving voltage. In order to scan through the target gas absorption line, the temperature swept method is adopted for the tunable distributed feed-back (DFB) diode laser working at 1535nm that accesses the near-infrared vibration-rotation spectrum of acetylene. The profile of acetylene P17 absorption line at 1535.39nm is recovered ideally for ~100 parts-per-million (ppm) acetylene balanced by nitrogen. The experimental signal to noise ratio (SNR) of absorption line recovery for 500mW laser power was ~80 and hence the

  10. Polyphenolic Profile and Targeted Bioactivity of Methanolic Extracts from Mediterranean Ethnomedicinal Plants on Human Cancer Cell Lines.

    Science.gov (United States)

    Pollio, Antonino; Zarrelli, Armando; Romanucci, Valeria; Di Mauro, Alfredo; Barra, Federica; Pinto, Gabriele; Crescenzi, Elvira; Roscetto, Emanuela; Palumbo, Giuseppe

    2016-03-23

    The methanol extracts of the aerial part of four ethnomedicinal plants of Mediterranean region, two non-seed vascular plants, Equisetum hyemale L. and Phyllitis scolopendrium (L.) Newman, and two Spermatophyta, Juniperus communis L. (J. communis) and Cotinus coggygria Scop. (C. coggygria), were screened against four human cells lines (A549, MCF7, TK6 and U937). Only the extracts of J. communis and C. coggygria showed marked cytotoxic effects, affecting both cell morphology and growth. A dose-dependent effect of these two extracts was also observed on the cell cycle distribution. Incubation of all the cell lines in a medium containing J. communis extract determined a remarkable accumulation of cells in the G2/M phase, whereas the C. coggygria extract induced a significant increase in the percentage of G1 cells. The novelty of our findings stands on the observation that the two extracts, consistently, elicited coherent effects on the cell cycle in four cell lines, independently from their phenotype, as two of them have epithelial origin and grow adherent and two are lymphoblastoid and grow in suspension. Even the expression profiles of several proteins regulating cell cycle progression and cell death were affected by both extracts. LC-MS investigation of methanol extract of C. coggygria led to the identification of twelve flavonoids (compounds 1-11, 19) and eight polyphenols derivatives (12-18, 20), while in J. communis extract, eight flavonoids (21-28), a α-ionone glycoside (29) and a lignin (30) were found. Although many of these compounds have interesting individual biological activities, their natural blends seem to exert specific effects on the proliferation of cell lines either growing adherent or in suspension, suggesting potential use in fighting cancer.

  11. Gene expression profile differences in high and low metastatic human ovarian cancer cell lines by gene chip

    Institute of Scientific and Technical Information of China (English)

    许沈华; 牟瀚舟; 吕桂泉; 朱赤红; 羊正炎; 高永良; 楼洪坤; 刘祥麟; 程勇; 杨文

    2002-01-01

    Objectives To study the difference between gene expressions of high (H0-8910PM) and low (HO-8910) metastatic human ovarian carcinoma cell lines and screen novel associated genes by cDNA microarray. Methods cDNA retro-transcribed from equal quantities of mRNA derived from high and low metastatic tumor cells or normal ovarian tissues were labeled with Cy5 and Cy3 fluorescein as probes. The mixed probe was hybridized with two pieces of BioDoor 4096 double dot human whole gene chip and scanned with a ScanArray 3000 laser scanner. The acquired image was analyzed by ImaGene 3.0 software. Results A total of 355 genes with expression levels more than 3 times larger were found by comparing the HO-8910 cell with normal ovarian epithelial cells. A total of 323 genes with expression levels more than 3 times larger in HO-8910PM cells compared to normal ovarian epithelium cells were also detected. A total of 165 genes whose expression levels were more than two times those of HO-8910PM cells compared to their mother cell line (HO-8910) were detected. Twenty-one genes with expression levels >3 times were found from comparison of these two tumor cell lines.Conclusions cDNA microarray techniques are effective in screening differential gene expression between two human ovarian cancer cell lines (H0-8910PM; HO-8910) and normal ovarian epithelial cells. These genes may be related to the genesis and development of ovarian carcinoma. Analysis of the human ovarian cancer gene expression profile with cDNA microarray may help in gene diagnosis, treatment and prevention.

  12. Alterations of the exo- and endometabolite profiles in breast cancer cell lines: A mass spectrometry-based metabolomics approach.

    Science.gov (United States)

    Willmann, Lucas; Schlimpert, Manuel; Hirschfeld, Marc; Erbes, Thalia; Neubauer, Hans; Stickeler, Elmar; Kammerer, Bernd

    2016-06-21

    In recent years, knowledge about metabolite changes which are characteristic for the physiologic state of cancer cells has been acquired by liquid chromatography coupled to mass spectrometry. Distinct molecularly characterized breast cancer cell lines provide an unbiased and standardized in vitro tumor model reflecting the heterogeneity of the disease. Tandem mass spectrometry is a widely applied analytical platform and highly sensitive technique for analysis of complex biological samples. Endo- and exometabolite analysis of the breast cancer cell lines MDA-MB-231, -453 and BT-474 as well as the breast epithelial cell line MCF-10A has been performed using two different analytical platforms: UPLC-ESI-Q-TOF based on a scheduled precursor list has been applied for highlighting of significant differences between cell lines and HPLC-ESI-QqQ using multiple reaction monitoring has been utilized for a targeted approach focusing on RNA metabolism and interconnected pathways, respectively. Statistical analysis enabled a clear discrimination of the breast epithelial from the breast cancer cell lines. As an effect of oxidative stress, a decreased GSH/GSSG ratio has been detected in breast cancer cell lines. The triple negative breast cancer cell line MDA-MB-231 showed an elevation in nicotinamide, 1-ribosyl-nicotinamide and NAD+ reflecting the increased energy demand in triple negative breast cancer, which has a more aggressive clinical course than other forms of breast cancer. Obtained distinct metabolite pattern could be correlated with distinct molecular characteristics of breast cancer cells. Results and methodology of this preliminary in vitro study could be transferred to in vivo studies with breast cancer patients.

  13. Numerical modelling of multimode fibre-optic communication lines

    Energy Technology Data Exchange (ETDEWEB)

    Sidelnikov, O S; Fedoruk, M P [Novosibirsk State University, Novosibirsk (Russian Federation); Sygletos, S; Ferreira, F [Aston University, England, Birmingham, B4 7ET (United Kingdom)

    2016-01-31

    The results of numerical modelling of nonlinear propagation of an optical signal in multimode fibres with a small differential group delay are presented. It is found that the dependence of the error vector magnitude (EVM) on the differential group delay can be reduced by increasing the number of ADC samples per symbol in the numerical implementation of the differential group delay compensation algorithm in the receiver. The possibility of using multimode fibres with a small differential group delay for data transmission in modern digital communication systems is demonstrated. It is shown that with increasing number of modes the strong coupling regime provides a lower EVM level than the weak coupling one. (fibre-optic communication lines)

  14. Pressure and velocity profiles in a static mechanical hemilarynx model.

    Science.gov (United States)

    Alipour, Fariborz; Scherer, Ronald C

    2002-12-01

    This study examined pressure and velocity profiles in a hemilarynx mechanical model of phonation. The glottal section had parallel walls and was fabricated from hard plastic. Twelve pressure taps were created in the vocal fold surface and connected to a differential pressure transducer through a pressure switch. The glottal gap was measured with feeler gauges and the uniform glottal duct was verified by use of a laser system. Eight pressure transducers were placed in the flat wall opposite the vocal fold. Hot-wire anemometry was used to obtain velocity profiles upstream and downstream of the glottis. The results indicate that the pressure distribution on the vocal fold surface was consistent with pressure change along a parallel duct, whereas the pressures on the opposite flat wall typically were lower (by 8%-40% of the transglottal pressure just past mid-glottis). The upstream velocity profiles were symmetric regardless of the constriction shape and size. The jet flow downstream of the glottis was turbulent even for laminar upstream conditions. The front of the jet was consistently approximately 1.5 mm from the flat wall for glottal gaps of 0.4, 0.8 and 1.2 mm. The turbulence intensity also remained approximately at the same location of about 4 mm from the flat wall for the two larger gaps.

  15. Five-Factor Model personality profiles of drug users

    Directory of Open Access Journals (Sweden)

    Crum Rosa M

    2008-04-01

    Full Text Available Abstract Background Personality traits are considered risk factors for drug use, and, in turn, the psychoactive substances impact individuals' traits. Furthermore, there is increasing interest in developing treatment approaches that match an individual's personality profile. To advance our knowledge of the role of individual differences in drug use, the present study compares the personality profile of tobacco, marijuana, cocaine, and heroin users and non-users using the wide spectrum Five-Factor Model (FFM of personality in a diverse community sample. Method Participants (N = 1,102; mean age = 57 were part of the Epidemiologic Catchment Area (ECA program in Baltimore, MD, USA. The sample was drawn from a community with a wide range of socio-economic conditions. Personality traits were assessed with the Revised NEO Personality Inventory (NEO-PI-R, and psychoactive substance use was assessed with systematic interview. Results Compared to never smokers, current cigarette smokers score lower on Conscientiousness and higher on Neuroticism. Similar, but more extreme, is the profile of cocaine/heroin users, which score very high on Neuroticism, especially Vulnerability, and very low on Conscientiousness, particularly Competence, Achievement-Striving, and Deliberation. By contrast, marijuana users score high on Openness to Experience, average on Neuroticism, but low on Agreeableness and Conscientiousness. Conclusion In addition to confirming high levels of negative affect and impulsive traits, this study highlights the links between drug use and low Conscientiousness. These links provide insight into the etiology of drug use and have implications for public health interventions.

  16. Convective Signatures in Ozone Profiles: Guidance for Cloud Models

    Science.gov (United States)

    Stone, J. B.; Thompson, A. M.; Miller, S. K.; Witte, J. C.; Pickering, K. E.; Tao, W. K.

    2006-05-01

    Ozone throughout the free troposphere is a tracer for convection, stratospheric exchange and pollution. Convective influences are typically manifested in two ways: (1) redistribution of ozone from the boundary-layer to free troposphere. In unpolluted regions, this usually means decreasing ozone in the upper troposphere (UT) or UT/LS (upper troposphere-lower stratosphere). Over polluted regions, the opposite may occur. (2) enhancing O3 precursors (NO, CO, hydrocarbons) in the free troposphere, through redistribution, or in the case of lightning, through direct production of NO, adds to photochemical ozone formation. Since about 1990 we have studied ozone dynamics and photochemistry with cloud-resolving (CRM) and larger-scale models. Aircraft profiles of O3, ozone precursors (NO, CO, hydrocarbons) and photochemically related constituents guide model input and are used to evaluate model output. Recently, we have used a semi-empirical approach ("lamina-layering," after Pierce and Grant [1998]) to identifying convective impacts on ozone profiles taken with soundings. The latter are measured by ozonesondes that are flown with radiosondes, to collect PTU data. The advantage of ozonesondes is consistent vertical sampling of ozone into the UT/LS with 5- 25 m resolution, and regular frequency at stations where they are launched. Examples of convective influence in ozone profiles - case studies and climatology at selected locations - will be shown for mid-latitudes and tropics. In mid-latitudes convective ozone budgets are compared to influences of stratospheric exchange and pollution. In the tropics, convective impacts reflect El Nino, the MJO and possible trends in a cooling UT/LS.

  17. Evolution of radial profiles in regular Lemaitre-Tolman-Bondi dust models

    CERN Document Server

    Sussman, Roberto A

    2010-01-01

    By introducing a quasi--local scalar representation for regular Lemaitre-Tolman-Bondi (LTB) dust models, we undertake a comprehensive and rigorous analytic study of the evolution of radial profiles of covariant scalars in these models. We consider specifically the phenomenon of "profile inversions" in which an initial clump profile of density, spatial curvature or the expansion scalar, might evolve into a void profile (and vice versa). Previous work in the literature on models with density void profiles and/or allowing for density profile inversions is given full generalization, with some erroneous results corrected. We prove rigorously that if an evolution without shell crossings is assumed, then only the 'clump to void' density profile inversion can occur, and only in hyperbolic models or regions. The profiles of spatial curvature follow similar patterns as those of the density, with 'clump to void' inversions only possible for hyperbolic models or regions. However, profiles of the expansion scalar are less...

  18. A model for quantification of temperature profiles via germination times

    DEFF Research Database (Denmark)

    Pipper, Christian Bressen; Adolf, Verena Isabelle; Jacobsen, Sven-Erik

    2013-01-01

    Current methodology to quantify temperature characteristics in germination of seeds is predominantly based on analysis of the time to reach a given germination fraction, that is, the quantiles in the distribution of the germination time of a seed. In practice interpolation between observed...... time and a specific type of accelerated failure time models is provided. As a consequence the observed number of germinated seeds at given monitoring times may be analysed directly by a grouped time-to-event model from which characteristics of the temperature profile may be identified and estimated...... germination fractions at given monitoring times is used to obtain the time to reach a given germination fraction. As a consequence the obtained value will be highly dependent on the actual monitoring scheme used in the experiment. In this paper a link between currently used quantile models for the germination...

  19. A model for abrupt changes in pulsar pulse profile

    Science.gov (United States)

    Yuen, R.; Melrose, D. B.

    2017-08-01

    We propose and explore a purely magnetospheric model for observed abrupt changes in pulsar radio profile. The flow rate of the magnetospheric plasma is dependent on the magnetospheric state described by the parameter y. We include the effect of the motion of the visible point along its trajectory, whose omission from a 'standard' version of viewing geometry is strictly valid only for align rotation and approximately valid for oblique rotation only in a narrow range of pulsar phase, which decreases as the obliquity increases. Emission is assumed from spots, distributed uniformly around the magnetic axis, so that observable features, such as subpulses, appear to rotate at a rate, ωR, relative to the visible point. We find that the apparent motion of an individual spot is not constant, and the apparent distribution of emission spots around the trajectory of the visible point is uneven being highest around the centre of the pulse window, where their apparent motion is slowest, allowing more spots to be present simultaneously in the pulse window than in the 'standard' version. An abrupt (or more gradual) change in y implies a change in ωR, which affects the pulse structure and profile. As a case study, we apply the model to 'swooshing' in PSR B0919+06. We discuss correlated slowing down rate in the model and related time-dependent phenomena in radio pulsars.

  20. A Parametric Model for Barred Equilibrium Beach Profiles

    Science.gov (United States)

    2014-05-10

    A parametric model for barred equilibrium beach profiles Robert A. Holman a,⁎, David M. Lalejini a, Kacey Edwards b, Jay Veeramony b a Marine...a limited cross-shore span. Coastal Engineering 90 (2014) 85–94 ⁎ Corresponding author. Tel.: +1 541 737 2914. E-mail addresses: holman ...coas.oregonstate.edu (R.A. Holman ), David.Lalejini@nrlssc.navy.mil (D.M. Lalejini), kacey.edwards@nrlssc.navy.mil (K. Edwards), jay.veeramony@nrlssc.navy.mil (J

  1. A line-broadening analysis model for the microstructural characterization of nanocrystalline materials from asymmetric x-ray diffraction peaks.

    Science.gov (United States)

    Pantoja-Cortés, Juan; Sánchez-Bajo, Florentino; Ortiz, Angel L

    2012-05-30

    Nanograin sizes and crystal lattice microstrains in nanocrystalline materials are typically evaluated from the broadening of their x-ray diffraction (XRD) peaks under the assumption of symmetrical diffraction profiles. Since this assumption is not entirely satisfactory, we formulate a line-broadening analysis model of a single peak that considers explicitly the XRD peak asymmetry. The model is a generalization of the variance method in which the shape of the XRD peaks is idealized through asymmetrical split pseudo-Voigt functions. The model is validated on two nanocrystalline powders.

  2. Quantitative Analysis of Probabilistic Models of Software Product Lines with Statistical Model Checking

    DEFF Research Database (Denmark)

    ter Beek, Maurice H.; Legay, Axel; Lluch Lafuente, Alberto

    2015-01-01

    We investigate the suitability of statistical model checking techniques for analysing quantitative properties of software product line models with probabilistic aspects. For this purpose, we enrich the feature-oriented language FLAN with action rates, which specify the likelihood of exhibiting...... particular behaviour or of installing features at a specific moment or in a specific order. The enriched language (called PFLAN) allows us to specify models of software product lines with probabilistic configurations and behaviour, e.g. by considering a PFLAN semantics based on discrete-time Markov chains....... The Maude implementation of PFLAN is combined with the distributed statistical model checker MultiVeStA to perform quantitative analyses of a simple product line case study. The presented analyses include the likelihood of certain behaviour of interest (e.g. product malfunctioning) and the expected average...

  3. On the relation between the linear factor model and the latent profile model

    NARCIS (Netherlands)

    Halpin, P.F.; Dolan, C.V.; Grasman, R.P.P.P.; de Boeck, P.

    2011-01-01

    The relationship between linear factor models and latent profile models is addressed within the context of maximum likelihood estimation based on the joint distribution of the manifest variables. Although the two models are well known to imply equivalent covariance decompositions, in general they do

  4. On the Relation between the Linear Factor Model and the Latent Profile Model

    Science.gov (United States)

    Halpin, Peter F.; Dolan, Conor V.; Grasman, Raoul P. P. P.; De Boeck, Paul

    2011-01-01

    The relationship between linear factor models and latent profile models is addressed within the context of maximum likelihood estimation based on the joint distribution of the manifest variables. Although the two models are well known to imply equivalent covariance decompositions, in general they do not yield equivalent estimates of the…

  5. Microstructure and texture of electrodeposited Ni–ZrC composite coatings investigated by Rietveld XRD line profile analysis

    Energy Technology Data Exchange (ETDEWEB)

    Zhang, Zhongquan; Jiang, Chuanhai, E-mail: jiangchuanhai211@163.com; Fu, Peng; Cai, Fei; Ma, Naiheng

    2015-03-25

    Highlights: • Microstructure of Ni–ZrC electrodeposits is studied by Rietveld refinement. • Rietveld refinement software is used to simulate the pole figures of Ni–ZrC. • The RTC, simulated and measured pole figures are coincident with each other. • Influence of current density on the texture of Ni–ZrC is studied. - Abstract: Rietveld X-ray diffraction (XRD) line profile analysis method was used to investigate the influence of applied current density on the microstructure and texture of the electrodeposited Ni–ZrC composite coatings. Crystallite size, microstrain, distribution of crystallite size, dislocation density, crystalline preferred orientation (texture), and ZrC particles content of the Ni–ZrC coatings were obtained from the Rietveld XRD line profile analysis. The results show that the crystallite size of Ni–ZrC coating increases, the microstrain and dislocation density decrease with the increasing of the current density. And the distribution of crystallite size is less uniform at higher current density. The pole figures simulated by Rietveld analysis software are coincident with the measured pole figures of Ni–ZrC coatings. The calculated relative texture coefficient (RTC) values, the simulated and measured pole figures of the coatings all illustrate that the texture of Ni–ZrC coating is modified from weak (2 2 0) to strong (2 0 0) texture with the increasing of applied current density. The microstructure evolution of Ni–ZrC composites is ascribed to the change of applied current density and ZrC content in the coatings.

  6. Profiling the progression of cancer: separation of microsomal proteins in MCF10 breast epithelial cell lines using nonporous chromatophoresis.

    Science.gov (United States)

    O'Neil, Kimberly A; Miller, Fred R; Barder, Timothy J; Lubman, David M

    2003-07-01

    The heterogeneity of cellular protein expression has stimulated development of separations targeting smaller groups of related proteins rather than entire proteomes. The following work describes the development of a technique for the characterization of membrane subproteomes from five different breast epithelial cell lines. Intact membrane proteins are separated by hydrophobicity in the first dimension using nonporous reversed-phase high-performance liquid chromatography (RP-HPLC) to generate unique chromatographic profiles. Fractions of eluent are further separated using sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) to create distinct banding patterns. This hybrid liquid phase/gel phase method circumvents issues of membrane protein precipitation and provides a simple strategy aimed at isolating and characterizing a traditionally underrepresented protein class. Membrane protein profiles are created that discriminate between microsomal fractions of breast epithelial cells in different stages of neoplastic progression. Proteins are subsequently identified using matrix-assisted laser desorption/ionization - mass spectrometry (MALDI-MS) mass fingerprinting and MALDI-quadrupole time of flight - tandem mass spectrometry (QTOF-MS/MS) peptide sequencing. Furthermore, as this strategy preserves intact protein structure, further characterization can be performed on proteins producing mass fingerprint spectra and fragmentation spectra that did not result in database protein identifications. The coupling of nonporous RP-HPLC with SDS-PAGE provides a useful alternative to two-dimensional PAGE (2-D-PAGE) for membrane protein analysis.

  7. Profile of Exosomal and Intracellular microRNA in Gamma-Herpesvirus-Infected Lymphoma Cell Lines

    Science.gov (United States)

    Hoshina, Shiho; Sekizuka, Tsuyoshi; Kataoka, Michiyo; Hasegawa, Hideki; Hamada, Hiromichi; Kuroda, Makoto; Katano, Harutaka

    2016-01-01

    Exosomes are small vesicles released from cells, into which microRNAs (miRNA) are specifically sorted and accumulated. Two gamma-herpesviruses, Kaposi sarcoma-associated herpesvirus (KSHV) and Epstein—Barr virus (EBV), encode miRNAs in their genomes and express virus-encoded miRNAs in cells and exosomes. However, there is little information about the detailed distribution of virus-encoded miRNAs in cells and exosomes. In this study, we thus identified virus- and host-encoded miRNAs in exosomes released from KSHV- or EBV-infected lymphoma cell lines and compared them with intracellular miRNAs using a next-generation sequencer. Sequencing analysis demonstrated that 48% of the annotated miRNAs in the exosomes from KSHV-infected cells originated from KSHV. Human mir-10b-5p and mir-143-3p were much more highly concentrated in exosomes than in cells. Exosomes contained more nonexact mature miRNAs that did not exactly match those in miRBase than cells. Among the KSHV-encoded miRNAs, miRK12-3-5p was the most abundant exact mature miRNA in both cells and exosomes that exactly matched those in miRBase. Recently identified EXOmotifs, nucleotide motifs that control the loading of miRNAs into exosomes were frequently found within the sequences of KSHV-encoded miRNAs, and the presence of the EXOmotif CCCT or CCCG was associated with the localization of miRNA in exosomes in KSHV-infected cells. These observations suggest that specific virus-encoded miRNAs are sorted by EXOmotifs and accumulate in exosomes in virus-infected cells. PMID:27611973

  8. Chromospheric diagnosis with Ca II lines: forward modeling in forward scattering (I)

    CERN Document Server

    Carlin, E S

    2014-01-01

    This paper shows the first synthetic tomography of the quiet solar chromosphere formed by spatial maps of scattering polarization. It has been calculated for the CaII 8498, 8542 and 3934 A lines by solving the NLTE (non-local thermodynamical equilibrium) RT (radiative transfer) problem of the second kind in a 3D atmosphere model obtained from realistic MHD (magneto-hydrodynamical) simulations. Maps of circular polarization were calculated neglecting atomic polarization. Our investigation focuses on the linear polarization signals induced by kinematics, radiation field anisotropy and Hanle effect in forward-scattering geometry. Thus, instead of considering slit profiles at the limb as normally done in the study of the second solar spectrum, we synthetize and analyze spatial maps of polarization at disk center. It allows us to understand the spatial signatures of dynamics and magnetic field in the linear polarization for discriminating them observationally. Our results suggest new ideas for chromospheric diagno...

  9. Expansion of Collisional Radiative Model for Helium line ratio spectroscopy

    Science.gov (United States)

    Cinquegrani, David; Cooper, Chris; Forest, Cary; Milhone, Jason; Munoz-Borges, Jorge; Schmitz, Oliver; Unterberg, Ezekial

    2015-11-01

    Helium line ratio spectroscopy is a powerful technique of active plasma edge spectroscopy. It enables reconstruction of plasma edge parameters like electron density and temperature by use of suitable Collisional Radiative Models (CRM). An established approach is successful at moderate plasma densities (~1018m-3 range) and temperature (30-300eV), taking recombination and charge exchange to be negligible. The goal of this work is to experimentally explore limitations of this approach to CRM. For basic validation the Madison Plasma Dynamo eXperiment (MPDX) will be used. MPDX offers a very uniform plasma and spherical symmetry at low temperature (5-20 eV) and low density (1016 -1017m-3) . Initial data from MPDX shows a deviation in CRM results when compared to Langmuir probe data. This discrepancy points to the importance of recombination effects. The validated model is applied to first time measurement of electron density and temperature in front of an ICRH antenna at the TEXTOR tokamak. These measurements are important to understand RF coupling and PMI physics at the antenna limiters. Work supported in part by start up funds of the Department of Engineering Physics at the UW - Madison, USA and NSF CAREER award PHY-1455210.

  10. Transcriptional profile of a myotube starvation model of atrophy

    Science.gov (United States)

    Stevenson, Eric J.; Koncarevic, Alan; Giresi, Paul G.; Jackman, Robert W.; Kandarian, Susan C.

    2005-01-01

    Skeletal muscle wasting is a pervasive phenomenon that can result from a wide range of pathological conditions as well as from habitual muscular inactivity. The present work describes a cell-culture condition that induces significant atrophy in skeletal muscle C2C12 myotubes. The failure to replenish differentiation media in mature myotubes leads to rapid atrophy (53% in diameter), which is referred to here as starvation. Affymetrix microarrays were used to develop a transcriptional profile of control (fed) vs. atrophied (nonfed) myotubes. Myotube starvation was characterized by an upregulation of genes involved in translational inhibition, amino acid biosynthesis and transport, and cell cycle arrest/apoptosis, among others. Downregulated genes included several structural and regulatory elements of the extracellular matrix as well as several elements of Wnt/frizzled and TGF-beta signaling pathways. Interestingly, the characteristic transcriptional upregulation of the ubiquitin-proteasome system, calpains, and cathepsins known to occur in multiple in vivo models of atrophy were not seen during myotube starvation. With the exception of the downregulation of extracellular matrix genes, serine protease inhibitor genes, and the upregulation of the translation initiation factor PHAS-I, this model of atrophy in cell culture has a transcriptional profile quite distinct from any study published to date with atrophy in whole muscle. These data show that, although the gross morphology of atrophied muscle fibers may be similar in whole muscle vs. myotube culture, the processes by which this phenotype is achieved differ markedly.

  11. Searching double-peaked emission line profiles in the spectra of galaxies through the symmetry of the cross-correlation function

    CERN Document Server

    Garcia-Lorenzo, B

    2012-01-01

    The presence of double-peaked/multicomponent emission line profiles in spectra of galaxies is commonly done by visual inspection. However, the identification of complex emission line profiles by eye is unapproachable for large databases such as the Sloan Digital Sky Survey (SDSS) or the integral field spectroscopy surveys of galaxies (e.g. CALIFA or MaNGA). We describe a quick method involving the cross-correlation technique for detecting the presence of complex (double-peaked or multiple components) profiles in the spectra of galaxies, deriving simultaneously a first estimation of the velocity dispersions and radial velocities of the dominant gaseous component. We illustrate the proposed procedure with the well-known complex [OIII]4959,5007 profiles of the central region of NGC1068.

  12. Integrated model for line balancing with workstation inventory management

    OpenAIRE

    Dilip Roy; Debdip khan

    2010-01-01

    In this paper, we address the optimization of an integrated line balancing process with workstation inventory management. While doing so, we have studied the interconnection between line balancing and its conversion process. Almost each and every moderate to large manufacturing industry depends on a long and integrated supply chain, consisting of inbound logistic, conversion process and outbound logistic. In this sense an approach addresses a very general problem of integrated line balancing....

  13. Modeling of Stark–Zeeman Lines in Magnetized Hydrogen Plasmas

    Indian Academy of Sciences (India)

    J. Rosato; H. Bufferand; H. Capes; M. Koubiti; L. Godbert-Mouret; Y. Marandet; R. Stamm

    2015-12-01

    The action of electric and magnetic fields on atomic species results in a perturbation of the energy level structure, which alters the shape of spectral lines. In this work, we present the Zeeman–Stark line shape simulation method and perform new calculations of hydrogen Lyman and Balmer lines, in the framework of magnetic fusion research. The role of the Zeeman effect, fine structure and the plasma's non-homogeneity along the line-of-sight are investigated. Under specific conditions, our results are applicable to DA white dwarf atmospheres.

  14. First detection of linear polarization in the line profiles of active cool stars

    CERN Document Server

    Kochukhov, O; Piskunov, N; Snik, F; Jeffers, S V; Johns-Krull, C M; Keller, C U; Rodenhuis, M; Valenti, J A

    2011-01-01

    The application of high-resolution spectropolarimetry has led to major progress in understanding the magnetism and activity of late-type stars. During the last decade, magnetic fields have been discovered and mapped for many types of active cool stars using spectropolarimetric data. However, these observations and modeling attempts are fundamentally incomplete since they are based on the interpretation of the circular polarization alone. Taking advantage of the newly built HARPS polarimeter, we have obtained the first systematic observations of several cool active stars in all four Stokes parameters. Here we report the detection of magnetically-induced linear polarization for the primary component of the very active RS CVn binary HR 1099 and for the moderately active K dwarf epsilon Eri. For both stars the amplitude of linear polarization signatures is measured to be ~10^{-4} of the unpolarized continuum, which is approximately a factor of ten lower than for circular polarization. This is the first detection ...

  15. Alterations of urinary metabolite profile in model diabetic nephropathy

    Energy Technology Data Exchange (ETDEWEB)

    Stec, Donald F. [Vanderbilt Institute of Chemical Biology, Vanderbilt University Medical Center, Nashville, TN 37232 (United States); Wang, Suwan; Stothers, Cody [Department of Medicine, Vanderbilt University Medical Center, Nashville, TN 37232 (United States); Avance, Josh [Berea College, 1916 CPO, Berea, KY 40404 (United States); Denson, Deon [Choctaw Central High School, Philadelphia, MS 39350 (United States); Harris, Raymond [Department of Medicine, Vanderbilt University Medical Center, Nashville, TN 37232 (United States); Voziyan, Paul, E-mail: paul.voziyan@vanderbilt.edu [Department of Medicine, Vanderbilt University Medical Center, Nashville, TN 37232 (United States)

    2015-01-09

    Highlights: • {sup 1}H NMR spectroscopy was employed to study urinary metabolite profile in diabetic mouse models. • Mouse urinary metabolome showed major changes that are also found in human diabetic nephropathy. • These models can be new tools to study urinary biomarkers that are relevant to human disease. - Abstract: Countering the diabetes pandemic and consequent complications, such as nephropathy, will require better understanding of disease mechanisms and development of new diagnostic methods. Animal models can be versatile tools in studies of diabetic renal disease when model pathology is relevant to human diabetic nephropathy (DN). Diabetic models using endothelial nitric oxide synthase (eNOS) knock-out mice develop major renal lesions characteristic of human disease. However, it is unknown whether they can also reproduce changes in urinary metabolites found in human DN. We employed Type 1 and Type 2 diabetic mouse models of DN, i.e. STZ-eNOS{sup −/−} C57BLKS and eNOS{sup −/−} C57BLKS db/db, with the goal of determining changes in urinary metabolite profile using proton nuclear magnetic resonance (NMR). Six urinary metabolites with significantly lower levels in diabetic compared to control mice have been identified. Specifically, major changes were found in metabolites from tricarboxylic acid (TCA) cycle and aromatic amino acid catabolism including 3-indoxyl sulfate, cis-aconitate, 2-oxoisocaproate, N-phenyl-acetylglycine, 4-hydroxyphenyl acetate, and hippurate. Levels of 4-hydroxyphenyl acetic acid and hippuric acid showed the strongest reverse correlation to albumin-to-creatinine ratio (ACR), which is an indicator of renal damage. Importantly, similar changes in urinary hydroxyphenyl acetate and hippurate were previously reported in human renal disease. We demonstrated that STZ-eNOS{sup −/−} C57BLKS and eNOS{sup −/−} C57BLKS db/db mouse models can recapitulate changes in urinary metabolome found in human DN and therefore can be

  16. Modeling a multivariable reactor and on-line model predictive control.

    Science.gov (United States)

    Yu, D W; Yu, D L

    2005-10-01

    A nonlinear first principle model is developed for a laboratory-scaled multivariable chemical reactor rig in this paper and the on-line model predictive control (MPC) is implemented to the rig. The reactor has three variables-temperature, pH, and dissolved oxygen with nonlinear dynamics-and is therefore used as a pilot system for the biochemical industry. A nonlinear discrete-time model is derived for each of the three output variables and their model parameters are estimated from the real data using an adaptive optimization method. The developed model is used in a nonlinear MPC scheme. An accurate multistep-ahead prediction is obtained for MPC, where the extended Kalman filter is used to estimate system unknown states. The on-line control is implemented and a satisfactory tracking performance is achieved. The MPC is compared with three decentralized PID controllers and the advantage of the nonlinear MPC over the PID is clearly shown.

  17. Balancing mixed-model assembly lines: A computational evaluation of objectives to smoothen workload

    OpenAIRE

    Emde, Simon; Boysen, Nils; Scholl, Armin

    2010-01-01

    Abstract Mixed-model assembly lines are widely used in a range of production settings, such as the final assembly of the automotive and electronics industries, where they are applied to mass-produce standardized commodities. One of the greatest challenges when installing and reconfiguring these lines is the vast product variety modern mixed-model assembly lines have to cope with. Traditionally, product variety is bypassed during mid-term assembly line balancing by applying a joint ...

  18. Emission lines from rotating proto-stellar jets with variable velocity profiles. I. Three-dimensional numerical simulation of the non-magnetic case

    CERN Document Server

    Cerqueira, A H; Raga, A C; Vasconcelos, M J; De Colle, F

    2005-01-01

    Using the Yguazu-a three-dimensional hydrodynamic code, we have computed a set of numerical simulations of heavy, supersonic, radiatively cooling jets including variabilities in both the ejection direction (precession) and the jet velocity (intermittence). In order to investigate the effects of jet rotation on the shape of the line profiles, we also introduce an initial toroidal rotation velocity profile, in agreement with some recent observational evidence found in jets from T Tauri stars which seems to support the presence of a rotation velocity pattern inside the jet beam, near the jet production region. Since the Yguazu-a code includes an atomic/ionic network, we are able to compute the emission coefficients for several emission lines, and we generate line profiles for the H, [O I]6300, [S II]6716 and [N II]6548 lines. Using initial parameters that are suitable for the DG Tau microjet, we show that the computed radial velocity shift for the medium-velocity component of the line profile as a function of di...

  19. Measuring Neutron Star Radii via Pulse Profile Modeling with NICER

    CERN Document Server

    Ozel, Feryal; Arzoumanian, Zaven; Morsink, Sharon; Baubock, Michi

    2015-01-01

    The Neutron-star Interior Composition Explorer (NICER) is an X-ray astrophysics payload that will be placed on the International Space Station. Its primary science goal is to measure with high accuracy the pulse profiles that arise from the non-uniform thermal surface emission of rotation-powered pulsars. Modeling general relativistic effects on the profiles will lead to measuring the radii of these neutron stars and to constraining their equation of state. Achieving this goal will depend, among other things, on accurate knowledge of the source, sky, and instrument backgrounds. We use here simple analytic estimates to quantify the level at which these backgrounds need to be known in order for the upcoming measurements to provide significant constraints on the properties of neutron stars. We show that, even in the minimal-information scenario, knowledge of the background at a few percent level for a background-to-source countrate ratio of 0.2 allows for a measurement of the neutron star compactness to better t...

  20. Data assimilation of Argo profiles in a northwestern Pacific model

    Science.gov (United States)

    Wang, Zhaoyi; Storto, Andrea; Pinardi, Nadia; Liu, Guimei; Wang, Hui

    2017-01-01

    Based on a novel estimation of background-error covariances for assimilating Argo profiles, an oceanographic three-dimensional variational (3DVAR) data assimilation scheme was developed for the northwestern Pacific Ocean model (NwPM) for potential use in operational predictions and maritime safety applications. Temperature and salinity data extracted from Argo profiles from January to December 2010 were assimilated into the NwPM. The results show that the average daily temperature (salinity) root mean square error (RMSE) decreased from 0.99 °C (0.10 psu) to 0.62 °C (0.07 psu) in assimilation experiments throughout the northwestern Pacific, which represents a 37.2 % (27.6 %) reduction in the error. The temperature (salinity) RMSE decreased by ˜ 0.60 °C ( ˜ 0.05 psu) for the upper 900 m (1000 m). Sea level, temperature and salinity were in better agreement with in situ and satellite datasets after data assimilation than before. In addition, a 1-month experiment with daily analysis cycles and 5-day forecasts explored the performance of the system in an operational configuration. The results highlighted the positive impact of the 3DVAR initialization at all forecast ranges compared to the non-assimilative experiment. Therefore, the 3DVAR scheme proposed here, coupled to ROMS, shows a good predictive performance and can be used as an assimilation scheme for operational forecasting.

  1. Structural acoustics model of the violin radiativity profile.

    Science.gov (United States)

    Bissinger, George

    2008-12-01

    Violin radiativity profiles are dominated by the Helmholtz-like A0 cavity mode ( approximately 280 Hz), first corpus bending modes B1(-) and B1(+) ( approximately 500 Hz), and BH and bridge-filter peaks ( approximately 2.4 kHz and approximately 3.5 kHz, respectively), with falloff above approximately 4 kHz. The B1 modes-dependent on two low-lying free-plate modes--are proposed to excite A0 via coupling to B1-driven in-phase f-hole volume flows. VIOCADEAS data show that A0 radiativity increases primarily as A0-B1(-) frequency difference decreases, consistent with Meinel's 1937 experiment for too-thick/too-thin plate thicknesses, plus sound post removal and violin octet baritone results. The vibration-->acoustic energy filter, F(RAD), computed from shape-material-independent radiation and total damping, peaks at the critical frequency f(crit), estimated from a free-plate mode by analogy to flat-plate bending. Experimentally, f(crit) decreased as this plate mode (and B1(+)) frequency increased. Simulations show that increasing plate thicknesses lowers f(crit), reduces F(RAD), and moves the spectral balance toward lower frequencies. Incorporating string-->corpus filters (including bridge versus bridge-island impedances) provides a model for overall violin radiativity. This model-with B1 and A0-B1 couplings, and f(crit) (computed from a free-plate mode important to B1) strongly affecting the lowest and highest parts of the radiativity profile-substantiates prior empirical B1--sound quality linkages.

  2. Molecular and phenotypic characterisation of paediatric glioma cell lines as models for preclinical drug development

    DEFF Research Database (Denmark)

    Bax, Dorine A; Little, Suzanne E; Gaspar, Nathalie;

    2009-01-01

    in comparison to routinely used adult lines. PRINCIPAL FINDINGS: All lines proliferate as adherent monolayers and express glial markers. Copy number profiling revealed complex genomes including amplification and deletions of genes known to be pivotal in core glioblastoma signalling pathways. Expression...... profiling identified 93 differentially expressed genes which were able to distinguish between the adult and paediatric high grade cell lines, including a number of kinases and co-ordinated sets of genes associated with DNA integrity and the immune response. SIGNIFICANCE: These data demonstrate that glioma...... cell lines derived from paediatric patients show key molecular differences to those from adults, some of which are well known, whilst others may provide novel targets for evaluation in primary tumours. We thus provide the rationale and demonstrate the practicability of using paediatric glioma cell...

  3. Warm gas in the rotating disk of the Red Rectangle: accurate models of molecular line emission

    CERN Document Server

    Bujarrabal, V

    2013-01-01

    We aim to study the excitation conditions of the molecular gas in the rotating disk of the Red Rectangle, the only post-Asymptotic-Giant-Branch object in which the existence of an equatorial rotating disk has been demonstrated. For this purpose, we developed a complex numerical code that accurately treats radiative transfer in 2-D, adapted to the study of molecular lines from rotating disks. We present far-infrared Herschel/HIFI observations of the 12CO and 13CO J=6-5, J=10-9, and J=16-15 transitions in the Red Rectangle. We also present our code in detail and discuss the accuracy of its predictions, from comparison with well-tested codes. Theoretical line profiles are compared with the empirical data to deduce the physical conditions in the disk by means of model fitting. We conclude that our code is very efficient and produces reliable results. The comparison of the theoretical predictions with our observations reveals that the temperature of the Red Rectangle disk is typically ~ 100-150 K, about twice as h...

  4. Chromospheric Diagnosis with Ca II Lines: Forward Modeling in Forward Scattering. I

    Science.gov (United States)

    Carlin, E. S.; Asensio Ramos, A.

    2015-03-01

    This paper presents a synthetic tomography of the quiet solar chromosphere formed by spatial maps of scattering polarization. It has been calculated for the Ca II 8498, 8542, and 3934 Å lines by solving the non-LTE radiative transfer problem of the second kind in a three-dimensional atmosphere model obtained from realistic magneto-hydrodynamical simulations. Our investigation focuses on the linear polarization signals induced by kinematics, radiation field anisotropy, and the Hanle effect in forward-scattering geometry. Thus, instead of considering slit profiles at the limb as normally done in the study of the second solar spectrum, we synthesize and analyze spatial maps of polarization at the disk center. This allows us to understand the spatial signatures of dynamics and magnetic field in the linear polarization in order to discriminate them observationally. Our results suggest some ideas for chromospheric diagnosis that will be developed throughout a series of papers. In particular, Hanle polarity inversion lines and dynamic Hanle diagrams are two concepts introduced in the present work. We find that chromospheric dynamics and magnetic field topology create spatial polarization fingerprints that trace the dynamic situation of the plasma and the magnetic field. This allows us to reconstruct the magnetic field intensity in the middle chromosphere using Stokes V along grooves of null linear polarization. We finally address the problems of diagnosing Hanle saturation and kinematic amplification of scattering signals using Hanle diagrams.

  5. A transmission line model for propagation in elliptical core optical fibers

    Energy Technology Data Exchange (ETDEWEB)

    Georgantzos, E.; Boucouvalas, A. C. [Department of Telecommunications and Informatics, University of Peloponnese, Karaiskaki 70, 221 00, Tripoli Greece (Greece); Papageorgiou, C. [Department of Electrical Engineering, National technical University of Athens, Iroon Politechniou 9, Kaisariani, 16121, Athens (Greece)

    2015-12-31

    The calculation of mode propagation constants of elliptical core fibers has been the purpose of extended research leading to many notable methods, with the classic step index solution based on Mathieu functions. This paper seeks to derive a new innovative method for the determination of mode propagation constants in single mode fibers with elliptic core by modeling the elliptical fiber as a series of connected coupled transmission line elements. We develop a matrix formulation of the transmission line and the resonance of the circuits is used to calculate the mode propagation constants. The technique, used with success in the case of cylindrical fibers, is now being extended for the case of fibers with elliptical cross section. The advantage of this approach is that it is very well suited to be able to calculate the mode dispersion of arbitrary refractive index profile elliptical waveguides. The analysis begins with the deployment Maxwell’s equations adjusted for elliptical coordinates. Further algebraic analysis leads to a set of equations where we are faced with the appearance of harmonics. Taking into consideration predefined fixed number of harmonics simplifies the problem and enables the use of the resonant circuits approach. According to each case, programs have been created in Matlab, providing with a series of results (mode propagation constants) that are further compared with corresponding results from the ready known Mathieu functions method.

  6. Iron line profiles including emission from within the innermost stable orbit of a black hole accretion disc

    CERN Document Server

    Young, A J; Fabian, A C

    1998-01-01

    Reynolds & Begelman (1997) have recently proposed a model in which the broad and extremely redshifted iron line seen during a deep minimum of the light curve of the Seyfert 1 galaxy MCG-6-30-15 originates from matter spiralling into a Schwarzschild black hole, contrary to previous claims that the black hole may be spinning rapidly (Iwasawa et al 1996; Dabrowski et al 1997). Here we calculate in detail the X-ray spectrum produced by their model using the full reflected continuum emission, including absorption features. This calculation takes into account the doppler and relativistic effects. For the range of parameters we consider, we find that the spectrum should show a large photoelectric absorption edge of iron, which is not seen in the data. The absorption edge is a consequence of the line emitting matter within the innermost stable orbit being highly ionized, and is largely independent of the parameters chosen for their model. If we restrict our attention to the 3-10 keV band we may effectively remove...

  7. Alterations of urinary metabolite profile in model diabetic nephropathy.

    Science.gov (United States)

    Stec, Donald F; Wang, Suwan; Stothers, Cody; Avance, Josh; Denson, Deon; Harris, Raymond; Voziyan, Paul

    2015-01-09

    Countering the diabetes pandemic and consequent complications, such as nephropathy, will require better understanding of disease mechanisms and development of new diagnostic methods. Animal models can be versatile tools in studies of diabetic renal disease when model pathology is relevant to human diabetic nephropathy (DN). Diabetic models using endothelial nitric oxide synthase (eNOS) knock-out mice develop major renal lesions characteristic of human disease. However, it is unknown whether they can also reproduce changes in urinary metabolites found in human DN. We employed Type 1 and Type 2 diabetic mouse models of DN, i.e. STZ-eNOS(-/-) C57BLKS and eNOS(-/-) C57BLKS db/db, with the goal of determining changes in urinary metabolite profile using proton nuclear magnetic resonance (NMR). Six urinary metabolites with significantly lower levels in diabetic compared to control mice have been identified. Specifically, major changes were found in metabolites from tricarboxylic acid (TCA) cycle and aromatic amino acid catabolism including 3-indoxyl sulfate, cis-aconitate, 2-oxoisocaproate, N-phenyl-acetylglycine, 4-hydroxyphenyl acetate, and hippurate. Levels of 4-hydroxyphenyl acetic acid and hippuric acid showed the strongest reverse correlation to albumin-to-creatinine ratio (ACR), which is an indicator of renal damage. Importantly, similar changes in urinary hydroxyphenyl acetate and hippurate were previously reported in human renal disease. We demonstrated that STZ-eNOS(-/-) C57BLKS and eNOS(-/-) C57BLKS db/db mouse models can recapitulate changes in urinary metabolome found in human DN and therefore can be useful new tools in metabolomic studies relevant to human pathology.

  8. Altered expression profiles of microRNAs in a stable hepatitis B virus-expressing cell line

    Institute of Scientific and Technical Information of China (English)

    LIU Yan; ZHAO Jian-Jun; WANG Chun-mei; LI Mian-yang; HAN Ping; WANG Lin; CHENG Yong-qian; Fabien Zoulim; MA Xu; XU Dong-ping

    2009-01-01

    Background MicroRNAs (miRNAs) are highly conserved small non-coding RNAs of 18-25 nucleotides (nt) that mediate post-transcriptional gene regulation. Hepatitis B virus (HBV) can cause either acute or chronic hepatitis B, and is a high risk factor for liver cirrhosis and hepatocellular carcinoma. Some mammalian viruses have been shown to modulate the expression of host cellular miRNAs. However, interactions between the HBV and the host cellular miRNAs are largely unknown. Methods miRNA microarray and Northern blotting analysis were used to compare the expression profile of cellular miRNAs of a stable HBV-expressing cell line HepG2.2.15 and its parent cell line HepG2. mRNA microarray assay and the miRanda program were used to predict the miRNA targets. A flow cytometric assay was further used to investigate the expression of human leukocyte antigen (HLA)-A. Results Eighteen miRNAs were differentially expressed between the two cell lines. Among them, eleven were up-regulated and seven were down-regulated in HepG2.2.15 cells. Northern blotting analysis confirmed that the expression of miR-181a, miR-181b, miR-200b and miR-146a were up-regulated and the expression of miR-15a was down-regulated, which was in consistent with the results of the microarray analysis. Furthermore, some putative miRNA targets were predicted and verified to be linked with mRNA expression. The 3'-UTR of HLA-A gene had one partially complementary site for miR-181a and miR-181a might down-regulate the expression of HLA-A. Conclusion HBV replication modulates the expression of host cellular miRNAs, which may play a role in the pathogenesis of HBV-related liver diseases.

  9. Integrative structural modeling with small angle X-ray scattering profiles

    Directory of Open Access Journals (Sweden)

    Schneidman-Duhovny Dina

    2012-07-01

    Full Text Available Abstract Recent technological advances enabled high-throughput collection of Small Angle X-ray Scattering (SAXS profiles of biological macromolecules. Thus, computational methods for integrating SAXS profiles into structural modeling are needed more than ever. Here, we review specifically the use of SAXS profiles for the structural modeling of proteins, nucleic acids, and their complexes. First, the approaches for computing theoretical SAXS profiles from structures are presented. Second, computational methods for predicting protein structures, dynamics of proteins in solution, and assembly structures are covered. Third, we discuss the use of SAXS profiles in integrative structure modeling approaches that depend simultaneously on several data types.

  10. Profiling Patients’ Healthcare Needs to Support Integrated, Person-Centered Models for Long-Term Disease Management (Profile: Research Design

    Directory of Open Access Journals (Sweden)

    Arianne MJ Elissen

    2016-04-01

    Full Text Available Background: This article presents the design of PROFILe, a study investigating which (biomedical and non-(biomedical patient characteristics should guide more tailored chronic care. Based on this insight, the project aims to develop and validate ‘patient profiles’ that can be used in practice to determine optimal treatment strategies for subgroups of chronically ill with similar healthcare needs and preferences. Methods/Design: PROFILe is a practice-based research comprising four phases. The project focuses on patients with type 2 diabetes. During the first study phase, patient profiles are drafted based on a systematic literature research, latent class growth modeling, and expert collaboration. In phase 2, the profiles are validated from a clinical, patient-related and statistical perspective. Phase 3 involves a discrete choice experiment to gain insight into the patient preferences that exist per profile. In phase 4, the results from all analyses are integrated and recommendations formulated on which patient characteristics should guide tailored chronic care. Discussion: PROFILe is an innovative study which uses a uniquely holistic approach to assess the healthcare needs and preferences of chronically ill. The patient profiles resulting from this project must be tested in practice to investigate the effects of tailored management on patient experience, population health and costs.

  11. Transcriptome Profiling of Caco-2 Cancer Cell Line following Treatment with Extracts from Iodine-Biofortified Lettuce (Lactuca sativa L..

    Directory of Open Access Journals (Sweden)

    Aneta A Koronowicz

    Full Text Available Although iodization of salt is the most common method used to obtain iodine-enriched food, iodine deficiency disorders are still a global health problem and profoundly affect the quality of human life. Iodine is required for the synthesis of thyroid hormones, which are crucial regulators of human metabolism, cell growth, proliferation, apoptosis and have been reported to be involved in carcinogenesis. In this study, for the first time, we evaluated the effect of iodine-biofortified lettuce on transcriptomic profile of Caco-2 cancer cell line by applying the Whole Human Genome Microarray assay. We showed 1326 differentially expressed Caco-2 transcripts after treatment with iodine-biofortified (BFL and non-fortified (NFL lettuce extracts. We analysed pathways, molecular functions, biological processes and protein classes based on comparison between BFL and NFL specific genes. Iodine, which was expected to act as a free ion (KI-NFL or at least in part to be incorporated into lettuce macromolecules (BFL, differently regulated pathways of numerous transcription factors leading to different cellular effects. In this study we showed the inhibition of Caco-2 cells proliferation after treatment with BFL, but not potassium iodide (KI, and BFL-mediated induction of mitochondrial apoptosis and/or cell differentiation. Our results showed that iodine-biofortified plants can be effectively used by cells as an alternative source of this trace element. Moreover, the observed differences in action of both iodine sources may suggest a potential of BFL in cancer treatment.

  12. Transcriptome Profiling of Caco-2 Cancer Cell Line following Treatment with Extracts from Iodine-Biofortified Lettuce (Lactuca sativa L.).

    Science.gov (United States)

    Koronowicz, Aneta A; Kopeć, Aneta; Master, Adam; Smoleń, Sylwester; Piątkowska, Ewa; Bieżanowska-Kopeć, Renata; Ledwożyw-Smoleń, Iwona; Skoczylas, Łukasz; Rakoczy, Roksana; Leszczyńska, Teresa; Kapusta-Duch, Joanna; Pysz, Mirosław

    2016-01-01

    Although iodization of salt is the most common method used to obtain iodine-enriched food, iodine deficiency disorders are still a global health problem and profoundly affect the quality of human life. Iodine is required for the synthesis of thyroid hormones, which are crucial regulators of human metabolism, cell growth, proliferation, apoptosis and have been reported to be involved in carcinogenesis. In this study, for the first time, we evaluated the effect of iodine-biofortified lettuce on transcriptomic profile of Caco-2 cancer cell line by applying the Whole Human Genome Microarray assay. We showed 1326 differentially expressed Caco-2 transcripts after treatment with iodine-biofortified (BFL) and non-fortified (NFL) lettuce extracts. We analysed pathways, molecular functions, biological processes and protein classes based on comparison between BFL and NFL specific genes. Iodine, which was expected to act as a free ion (KI-NFL) or at least in part to be incorporated into lettuce macromolecules (BFL), differently regulated pathways of numerous transcription factors leading to different cellular effects. In this study we showed the inhibition of Caco-2 cells proliferation after treatment with BFL, but not potassium iodide (KI), and BFL-mediated induction of mitochondrial apoptosis and/or cell differentiation. Our results showed that iodine-biofortified plants can be effectively used by cells as an alternative source of this trace element. Moreover, the observed differences in action of both iodine sources may suggest a potential of BFL in cancer treatment.

  13. Monitoring gradient profile on-line in micro- and nano-high performance liquid chromatography using conductivity detection.

    Science.gov (United States)

    Zhang, Min; Chen, Apeng; Lu, Joann J; Cao, Chengxi; Liu, Shaorong

    2016-08-19

    In micro- or nano-flow high performance liquid chromatography (HPLC), flow-splitters and gradient elutions are commonly used for reverse phase HPLC separations. When a flow splitter was used at a high split-ratio (e.g., 1000:1 or higher), the actual gradient may deviate away from the programmed gradient. Sometimes, mobile phase concentrations can deviate by as much as 5%. In this work, we noticed that the conductivity (σ) of a gradient decreased with the increasing organic-solvent fraction (φ). Based on the relationship between σ and φ, a method was developed for monitoring gradient profile on-line to record any deviations in these HPLC systems. The conductivity could be measured by a traditional conductivity detector or a capacitively coupled contactless conductivity detector (C(4)D). The method was applied for assessing the performance of an electroosmotic pump (EOP) based nano-HPLC. We also observed that σ value of the gradient changed with system pressure; a=0.0175ΔP (R(2)=0.964), where a is the percentage of the conductivity increase and ΔP is the system pressure in bar. This effect was also investigated.

  14. X-ray diffraction line profile analysis for defect study in Zr–2.5% Nb material

    Indian Academy of Sciences (India)

    K Kapoor; D Lahiri; S V R Rao; T Sanyal; B P Kashyap

    2004-02-01

    The microstructure characterization by X-ray line profile analysis is possible for determination of dislocation density, micro-strain within grains due to dislocation and average coherent domain size (subgrain) within the grain. This study presents the X-ray diffraction peaks shape analysis and their broadening with different thermal treatments in Zr–2.5% Nb pressure tube material. The peak shape is analysed using Fourier transformation and information about coherent domain size, micro-strain and dislocation density could be obtained from the Fourier coefficients of the peak. Analysis of broadening of the peaks by integral breadth method also gives the coherent domain size, dislocation density and micro-strain present in the material. The results from the X-ray techniques are comparable to those obtained from direct observation of transmission electron microscopy. The measured yield strength increases with dislocation density. An empirical relationship is obtained for the yield strength from the dislocation density of the material. The measured strength is in agreement with the one calculated from dislocation density.

  15. Protein profiles reveal diverse responsive signaling pathways in kernels of two maize inbred lines with contrasting drought sensitivity.

    Science.gov (United States)

    Yang, Liming; Jiang, Tingbo; Fountain, Jake C; Scully, Brian T; Lee, Robert D; Kemerait, Robert C; Chen, Sixue; Guo, Baozhu

    2014-01-01

    Drought stress is a major factor that contributes to disease susceptibility and yield loss in agricultural crops. To identify drought responsive proteins and explore metabolic pathways involved in maize tolerance to drought stress, two maize lines (B73 and Lo964) with contrasting drought sensitivity were examined. The treatments of drought and well water were applied at 14 days after pollination (DAP), and protein profiles were investigated in developing kernels (35 DAP) using iTRAQ (isobaric tags for relative and absolute quantitation). Proteomic analysis showed that 70 and 36 proteins were significantly altered in their expression under drought treatments in B73 and Lo964, respectively. The numbers and levels of differentially expressed proteins were generally higher in the sensitive genotype, B73, implying an increased sensitivity to drought given the function of the observed differentially expressed proteins, such as redox homeostasis, cell rescue/defense, hormone regulation and protein biosynthesis and degradation. Lo964 possessed a more stable status with fewer differentially expressed proteins. However, B73 seems to rapidly initiate signaling pathways in response to drought through adjusting diverse defense pathways. These changes in protein expression allow for the production of a drought stress-responsive network in maize kernels.

  16. Protein Profiles Reveal Diverse Responsive Signaling Pathways in Kernels of Two Maize Inbred Lines with Contrasting Drought Sensitivity

    Directory of Open Access Journals (Sweden)

    Liming Yang

    2014-10-01

    Full Text Available Drought stress is a major factor that contributes to disease susceptibility and yield loss in agricultural crops. To identify drought responsive proteins and explore metabolic pathways involved in maize tolerance to drought stress, two maize lines (B73 and Lo964 with contrasting drought sensitivity were examined. The treatments of drought and well water were applied at 14 days after pollination (DAP, and protein profiles were investigated in developing kernels (35 DAP using iTRAQ (isobaric tags for relative and absolute quantitation. Proteomic analysis showed that 70 and 36 proteins were significantly altered in their expression under drought treatments in B73 and Lo964, respectively. The numbers and levels of differentially expressed proteins were generally higher in the sensitive genotype, B73, implying an increased sensitivity to drought given the function of the observed differentially expressed proteins, such as redox homeostasis, cell rescue/defense, hormone regulation and protein biosynthesis and degradation. Lo964 possessed a more stable status with fewer differentially expressed proteins. However, B73 seems to rapidly initiate signaling pathways in response to drought through adjusting diverse defense pathways. These changes in protein expression allow for the production of a drought stress-responsive network in maize kernels.

  17. Quality properties and expression profiling of protein disulfide isomerase genes during grain development of three spring wheat near isogenic lines

    Directory of Open Access Journals (Sweden)

    Dong Liwei

    2016-01-01

    Full Text Available Three wheat glutenin near isogenic lines (NILs CB037A, CB037B and CB037C were used to investigate their quality properties and the transcriptional expression profiles of PDI gene family during grain development. Our purpose is to understand the relationships between the dynamic expression of different PDI genes and glutenin allelic compositions related to gluten quality. The results showed that glutenin allelic variations had no significant effects on main agronomic traits and yield performance, but resulted in clear gluten quality changes. CB037B with 5+10 subunits had higher glutenin macropolymer (GMP content and better breadmaking quality than CB037A with 2+12 while the lack of Glu-B3h encoding one abundant B-subunit in CB037C significantly reduced GMP content, dough strength and breadmaking quality. The dynamic expression patterns of eight protein disulfide isomerase (PDI genes during grain development detected by quantitative real-time polymerase chain reaction (qRT-PCR showed the close correlations between higher expression levels of PDI3-1, PDI5-1 and PDI8-1 and the presence of 5+10 subunits. Meanwhile, Glu-B3h silence resulted in significant decrease of expression levels of five PDI genes (PDI3-1, PDI5-1, PDI6-1, PDI7-2 and PDI8-1, suggesting the vital roles of certain PDI genes in glutenin and GMP synthesis and gluten quality formation.

  18. Application of a Continued-Fraction-Based Theory to Line-Profile in Mn-Doped GaN Film

    Science.gov (United States)

    Park, Jung-Il; Lee, Hyeong-Rag; Lee, Su-Ho

    2012-05-01

    Starting with the Kubo formalism and using the projection operator technique (POT) introduced by Kawabata, the optical quantum transition line-profiles (QTLPs) formula for a Mn-doped wurtzite GaN film was derived as a function of temperature at a frequency of 9.49 GHz (X-band), on the basis of continued fraction representation (CFR) which is a counterpart of the conventional series expansion (CSE). Utilizing this formula we obtained the fine-structure parameter a - F = 9.4 ×10-4 cm-1 and fitting parameter ζ= 4.1. The optical quantum transition half-widths (QTHWs) obtained with the use of these parameters agrees quite well with the existing experimental result in the temperature region T > 20 K. The QTHWs increase with increasing temperature due to the interaction of electrons with optical phonons. Thus, the present technique is considered to be more convenient to explain the resonant system as in the case of other optical transition problems.

  19. Scanning electron microscope measurement of width and shape of 10 nm patterned lines using a JMONSEL-modeled library

    Energy Technology Data Exchange (ETDEWEB)

    Villarrubia, J.S., E-mail: john.villarrubia@nist.gov [Semiconductor and Dimensional Metrology Division, National Institute of Standards and Technology, Gaithersburg, MD 20899 (United States); Vladár, A.E.; Ming, B. [Semiconductor and Dimensional Metrology Division, National Institute of Standards and Technology, Gaithersburg, MD 20899 (United States); Kline, R.J.; Sunday, D.F. [Materials Science and Engineering Division, National Institute of Standards and Technology, Gaithersburg, MD 20899 (United States); Chawla, J.S.; List, S. [Intel Corporation, RA3-252, 5200 NE Elam Young Pkwy, Hillsboro, OR 97124 (United States)

    2015-07-15

    The width and shape of 10 nm to 12 nm wide lithographically patterned SiO{sub 2} lines were measured in the scanning electron microscope by fitting the measured intensity vs. position to a physics-based model in which the lines' widths and shapes are parameters. The approximately 32 nm pitch sample was patterned at Intel using a state-of-the-art pitch quartering process. Their narrow widths and asymmetrical shapes are representative of near-future generation transistor gates. These pose a challenge: the narrowness because electrons landing near one edge may scatter out of the other, so that the intensity profile at each edge becomes width-dependent, and the asymmetry because the shape requires more parameters to describe and measure. Modeling was performed by JMONSEL (Java Monte Carlo Simulation of Secondary Electrons), which produces a predicted yield vs. position for a given sample shape and composition. The simulator produces a library of predicted profiles for varying sample geometry. Shape parameter values are adjusted until interpolation of the library with those values best matches the measured image. Profiles thereby determined agreed with those determined by transmission electron microscopy and critical dimension small-angle x-ray scattering to better than 1 nm.

  20. First-principles-driven model-based current profile control for the DIII-D tokamak via LQI optimal control

    Science.gov (United States)

    Boyer, Mark D.; Barton, Justin; Schuster, Eugenio; Luce, Tim C.; Ferron, John R.; Walker, Michael L.; Humphreys, David A.; Penaflor, Ben G.; Johnson, Robert D.

    2013-10-01

    In tokamak fusion plasmas, control of the spatial distribution profile of the toroidal plasma current plays an important role in realizing certain advanced operating scenarios. These scenarios, characterized by improved confinement, magnetohydrodynamic stability, and a high fraction of non-inductively driven plasma current, could enable steady-state reactor operation with high fusion gain. Current profile control experiments at the DIII-D tokamak focus on using a combination of feedforward and feedback control to achieve a targeted current profile during the ramp-up and early flat-top phases of the shot and then to actively maintain this profile during the rest of the discharge. The dynamic evolution of the current profile is nonlinearly coupled with several plasma parameters, motivating the design of model-based control algorithms that can exploit knowledge of the system to achieve desired performance. In this work, we use a first-principles-driven, control-oriented model of the current profile evolution in low confinement mode (L-mode) discharges in DIII-D to design a feedback control law for regulating the profile around a desired trajectory. The model combines the magnetic diffusion equations with empirical correlations for the electron temperature, resistivity, and non-inductive current drive. To improve tracking performance of the system, a nonlinear input transformation is combined with a linear-quadratic-integral (LQI) optimal controller designed to minimize a weighted combination of the tracking error and controller effort. The resulting control law utilizes the total plasma current, total external heating power, and line averaged plasma density as actuators. A simulation study was used to test the controller's performance and ensure correct implementation in the DIII-D plasma control system prior to experimental testing. Experimental results are presented that show the first-principles-driven model-based control scheme's successful rejection of input

  1. Atom Resonance Lines for Modeling Atmosphere: Studies of Pressure-Broadening of Alkali Atom Resonance Lines for Modeling Atmospheres of Extrasolar Giant Planets and Brown Dwarfs

    Science.gov (United States)

    Hasan, Hashima (Technical Monitor); Kirby, K.; Babb, J.; Yoshino, K.

    2005-01-01

    We report on progress made in a joint program of theoretical and experimental research to study the line-broadening of alkali atom resonance lines due to collisions with species such as helium and molecular hydrogen. Accurate knowledge of the line profiles of Na and K as a function of temperature and pressure will allow such lines to serve as valuable diagnostics of the atmospheres of brown dwarfs and extra-solar giant planets. A new experimental apparatus has been designed, built and tested over the past year, and we are poised to begin collecting data on the first system of interest, the potassium resonance lines perturbed by collisions with helium. On the theoretical front, calculations of line-broadening due to sodium collisions with helium are nearly complete, using accurate molecular potential energy curves and transition moments just recently computed for this system. In addition we have completed calculations of the three relevant potential energy curves and associated transition moments for K - He, using the MOLPRO quantum chemistry codes. Currently, calculations of the potential surfaces describing K-H2 are in progress.

  2. Derivation of Aerosol Profiles for MC3E Convection Studies and Use in Simulations of the 20 May Squall Line Case

    Science.gov (United States)

    Fridlind, Ann M.; Xiaowen, Li; Wu, Di; Van Lier-Walqui, Marcus; Ackerman, Andrew S.; Tao, Wei-Kuo; McFarquhar, Greg M.; Wu, Wei; Dong, Xiquan; Wang, Jingyu; hide

    2017-01-01

    Advancing understanding of deep convection microphysics via mesoscale modeling studies of well-observed case studies requires observation-based aerosol inputs. Here, we derive hygroscopic aerosol size distribution input profiles from ground-based and airborne measurements for six convection case studies observed during the Midlatitude Continental Convective Cloud Experiment (MC3E) over Oklahoma. We demonstrate use of an input profile in simulations of the only well-observed case study that produced extensive stratiform outflow on 20 May 2011. At well-sampled elevations between -11 and -23 degree C over widespread stratiform rain, ice crystal number concentrations are consistently dominated by a single mode near 400 micrometer in randomly oriented maximum dimension (D[superscript max] ). The ice mass at -23 degree C is primarily in a closely collocated mode, whereas a mass mode near D[superscript max] -1000 micrometer becomes dominant with decreasing elevation to the -11 degree C level, consistent with possible aggregation during sedimentation. However, simulations with and without observation-based aerosol inputs systematically overpredict mass peak D[superscript max] by a factor of 3-5 and underpredict ice number concentration by a factor of 4-10. Previously reported simulations with both two-moment and size-resolved microphysics have shown biases of a similar nature. The observed ice properties are notably similar to those reported from recent tropical measurements. Based on several lines of evidence, we speculate that updraft microphysical pathways determining outflow properties in the 20 May case are similar to a tropical regime, likely associated with warm-temperature ice multiplication that is not well understood or well represented in models.

  3. Model for Atomic Oxygen Visible Line Emissions in Comet C/1995 O1 Hale-Bopp

    CERN Document Server

    Raghuram, Susarla

    2012-01-01

    We have recently developed a coupled chemistry-emission model for the green and red-doublet emissions of atomic oxygen on comet Hyakutake. In the present work we applied our model to comet Hale-Bopp, which had an order of magnitude higher H2O production rate than comet Hyakutake, to evaluate the photochemistry associated with the production and loss of O(1S) and O(1D) atoms and emission processes of green and red-doublet lines. We present the wavelength-dependent photo-attenuation rates for different photodissociation processes forming O(1S) and O(1D). The calculated radiative efficiency profiles of O(1S) and O(1D) atoms show that in comet Hale-Bopp the green and red-doublet emissions are emitted mostly above radial distances of 10^3 and 10^4 km, respectively. The model calculated [OI] 6300 A emission surface brightness and average intensity over the Fabry-P{\\'e}rot spectrometer field of view are consistent with the observation of Morgenthaler et al. (2001), while the intensity ratio of green to red-doublet e...

  4. Constraints on Hydrodynamical Subgrid Models from Quasar Absorption Line Studies of the Simulated Circumgalactic Medium

    CERN Document Server

    Hummels, Cameron; Smith, Britton; Turk, Matthew

    2012-01-01

    Cosmological hydrodynamical simulations of galaxy evolution are increasingly able to produce realistic galaxies, but the largest hurdle remaining is in constructing subgrid models that accurately describe the behavior of stellar feedback. As an alternate way to test and calibrate such models, we propose to focus on the circumgalactic medium. To do so, we generate a suite of adaptive-mesh refinement (AMR) simulations for a Milky-Way-massed galaxy run to z=0, systematically varying the feedback implementation. We then post-process the simulation data to compute the absorbing column density for a wide range of common atomic absorbers throughout the galactic halo, including H I, Mg II, Si II, Si III, Si IV, C IV, N V, O VI, and O VII. The radial profiles of these atomic column densities are compared against several quasar absorption line studies, to determine if one feedback prescription is favored. We find that although our models match some of the observations (specifically those ions with lower ionization stre...

  5. Full-field feature profile models in process control

    Science.gov (United States)

    Zavecz, Terrence E.

    2005-05-01

    Most process window analysis applications are capable of deriving the functional focus-dose workspace available to any set of device specifications. Previous work in this area has concentrated on calculating the superpositioned optimum operating points of various combinations of feature orientations or feature types. These studies invariably result in an average performance calculation that is biased by the impact of the substrate, reticle and exposure tool contributed perturbations. Many SEM's and optical metrology tools now provide full-feature profile information for multiple points in the exposure field. The inclusion of field spatial information into the process window analysis results in a calculation of greater accuracy and process understanding because now the capabilities of each exposure tool can be individually modeled and optimized. Such an analysis provides the added benefit that after the exposure tool is characterized, it's process perturbations can be removed from the analysis to provide greater understanding of the true process performance. Process window variables are shown to vary significantly across the exposure field of the scanner. Evaluating the depth-of-focus and optimum focus-dose at each point in the exposure field yields additional information on the imaging response of the reticle and scan-linearity of the exposure tool's reticle stage. The optimal focus response of the reticle is then removed from a full wafer exposure and the results are modeled to obtain a true process response and performance.

  6. Theoretical quasar emission-line ratios. VII - Energy-balance models for finite hydrogen slabs

    Science.gov (United States)

    Hubbard, E. N.; Puetter, R. C.

    1985-01-01

    The present energy balance calculations for finite, isobaric, hydrogen-slab quasar emission line clouds incorporate probabilistic radiative transfer (RT) in all lines and bound-free continua of a five-level continuum model hydrogen atom. Attention is given to the line ratios, line formation regions, level populations and model applicability results obtained. H lines and a variety of other considerations suggest the possibility of emission line cloud densities in excess of 10 to the 10th/cu cm. Lyman-beta/Lyman-alpha line ratios that are in agreement with observed values are obtained by the models. The observed Lyman/Balmer ratios can be achieved with clouds whose column depths are about 10 to the 22nd/sq cm.

  7. Failed Radiatively Accelerated Dusty Outflow Model of the Broad Line Region in Active Galactic Nuclei. I. Analytical Solution

    Science.gov (United States)

    Czerny, B.; Li, Yan-Rong; Hryniewicz, K.; Panda, S.; Wildy, C.; Sniegowska, M.; Wang, J.-M.; Sredzinska, J.; Karas, V.

    2017-09-01

    The physical origin of the broad line region in active galactic nuclei is still unclear despite many years of observational studies. The reason is that the region is unresolved, and the reverberation mapping results imply a complex velocity field. We adopt a theory-motivated approach to identify the principal mechanism responsible for this complex phenomenon. We consider the possibility that the role of dust is essential. We assume that the local radiation pressure acting on the dust in the accretion disk atmosphere launches the outflow of material, but higher above the disk the irradiation from the central parts causes dust evaporation and a subsequent fallback. This failed radiatively accelerated dusty outflow is expected to represent the material forming low ionization lines. In this paper we formulate simple analytical equations to describe the cloud motion, including the evaporation phase. The model is fully described just by the basic parameters of black hole mass, accretion rate, black hole spin, and viewing angle. We study how the spectral line generic profiles correspond to this dynamic. We show that the virial factor calculated from our model strongly depends on the black hole mass in the case of enhanced dust opacity, and thus it then correlates with the line width. This could explain why the virial factor measured in galaxies with pseudobulges differs from that obtained from objects with classical bulges, although the trend predicted by the current version of the model is opposite to the observed trend.

  8. Fluid structure in the immediate vicinity of an equilibrium contact line from first principles and assessment of disjoining pressure models

    Science.gov (United States)

    Nold, Andreas; Sibley, David N.; Goddard, Benjamin D.; Kalliadasis, Serafim

    2014-11-01

    Predicting the fluid structure at a three-phase contact line of macroscopic drops is of interest from a fundamental fluid dynamics point of view. However, exact computations for very small scales are prohibitive. As a consequence, coarse-grained quantities such as interface height and disjoining pressure profiles are used to model the interface shape. Here, we evaluate such coarse-grained models within a rigorous and self-consistent framework based on statistical mechanics, in particular with a Density Functional Theory (DFT) approach. We examine the nanoscale behavior of an equilibrium three-phase contact line in the presence of long-ranged intermolecular forces by employing DFT together with fundamental measure theory. Our analysis also enables us to evaluate the predictive quality of effective Hamiltonian models in the vicinity of the contact line. We compare the results for mean field effective Hamiltonians with disjoining pressures defined through the adsorption isotherm for a planar liquid film, and the normal force balance at the contact line [Phys. Fluids, 26, 072001, 2014]. Results are given for a variety of contact angles. An accurate description of the small-scale behavior of a three-phase conjunction is a prerequisite to understanding dynamic wetting phenomena.

  9. Observations and modelling of Helium lines in solar flares

    CERN Document Server

    Simões, Paulo J A; Labrosse, Nicolas; Kerr, Graham S

    2015-01-01

    We explore the response of the He II 304 {\\AA} and He I 584 {\\AA} line intensities to electron beam heating in solar flares using radiative hydrodynamic simulations. Comparing different electron beams parameters, we found that the intensities of both He lines are very sensitive to the energy flux deposited in the chromosphere, or more specifically to the heating rate, with He II 304 {\\AA} being more sensitive to the heating than He I 584 {\\AA}. Therefore, the He line ratio increases for larger heating rates in the chromosphere. A similar trend is found in observations, using SDO/EVE He irradiance ratios and estimates of the electron beam energy rate obtained from hard X-ray data. From the simulations, we also found that spectral index of the electrons can affect the He ratio but a similar effect was not found in the observations.

  10. Mixed Modeling of a SAW Delay Line Using VHDL-AMS

    Science.gov (United States)

    Wilson, William C.; Atkinson, Gary M.

    2006-01-01

    To aid in the development of SAW sensors for aerospace applications we have created a model of a SAW Delay line using VHDL. The model implements the Impulse Response method to calculate the frequency response, impedance, and insertion loss. The model includes optimization for the number of finger pairs in the IDTs and for the aperture height. This paper presents the model and the results from the model for a SAW delay line design.

  11. Continuum and line modeling of disks around young stars II. Line diagnostics for GASPS from the DENT grid

    CERN Document Server

    Kamp, I; Pinte, C; Tilling, I; Thi, W -F; Menard, F; Duchene, G; Augereau, J -C

    2011-01-01

    Aims. We want to understand the chemistry and physics of disks on the basis of a large unbiased and statistically relevant grid of disk models. One of the main goals is to explore the diagnostic power of various gas emission lines and line ratios for deriving main disk parameters such as the gas mass. Methods. We explore the results of the DENT grid (Disk Evolution with Neat Theory) that consists of 300 000 disk models with 11 free parameters. Through a statistical analysis, we search for correlations and trends in an effort to find tools for disk diagnostic. Results. All calculated quantities like species masses, temperatures, continuum and line fluxes differ by several orders of magnitude across the entire parameter space. The broad distribution of these quantities as a function of input parameters shows the limitation of using a prototype T Tauri or Herbig Ae/Be disk model. The statistical analysis of the DENT grid shows that CO gas is rarely the dominant carbon reservoir in disks. Models with large inner ...

  12. Modelling of Temperature Profiles and Transport Scaling in Auxiliary Heated Tokamaks

    DEFF Research Database (Denmark)

    Callen, J.D.; Christiansen, J.P.; Cordey, J.G.;

    1987-01-01

    The temperature profiles produced by various heating profiles are calculated from local heat transport models. The models take the heat flux to be the sum of heat diffusion and a non-diffusive heat flow, consistent with local measurements of heat transport. Two models are developed analytically i...

  13. Transfer line scattering model of therapeutic hadron beams and applications to nozzle and gantry optimization

    Science.gov (United States)

    Palm, M.; Benedikt, M.; Dorda, U.

    2013-01-01

    The field of hadron therapy is growing rapidly with several facilities currently being planned, under construction or in commissioning worldwide. In the “active scanning” irradiation technique, the target is irradiated using a narrow pencil beam that is scanned transversally over the target while the penetration depth is altered with the beam energy. Together, the target dose can thereby be conformed in all three dimensions to the shape of the tumor. For applications where a sharp lateral beam penumbra is required in order to spare critical organs from unwanted dose, beam size blowup due to scattering in on-line beam diagnostic monitors, air gaps and passive elements like the ripple filter must be minimized. This paper presents a model for transverse scattering of therapeutic hadron beams along arbitrary multislab geometries. The conventional scattering formulation, which is only applicable to a drift space, is extended to not only take beam optics into account, but also non-Gaussian transverse beam profiles which are typically obtained from the slow resonant extraction from a synchrotron. This work has been carried out during the design phase of the beam delivery system for MedAustron, an Austrian hadron therapy facility with first patient treatment planned for the end of 2015. Irradiation will be performed using active scanning with proton and carbon ion beams. As a direct application of the scattering model, design choices for the MedAustron proton gantry and treatment nozzles are evaluated with respect to the transverse beam profile at the focal point; in air and at the Bragg peak.

  14. Dynamic microRNA profiles of hepatic differentiated human umbilical cord lining-derived mesenchymal stem cells.

    Directory of Open Access Journals (Sweden)

    Lina Cui

    Full Text Available Despite the extensive hepatic differentiation potential of human umbilical cord lining-derived mesenchymal stem cells (hUC-MSC, little is known about the molecular mechanisms of hUC-MSC differentiation. At the post-transcriptional level, microRNAs are key players in the control of cell fate determination during differentiation. In this study, we aimed to identify microRNAs involved in the hepatic differentiation of hUC-MSCs. After successfully isolating hUC- MSCs, we induced hepatocyte formation in vitro with growth factors. After 26 days of induction, hUC-MSCs could express hepatocyte-specific genes, synthesize urea and glycogen and uptake low-density lipoprotein. Cellular total RNA from hUC-MSCs and hepatic differentiated hUC-MSCs was collected at 7 time points, including 2 days, 6 days, 10 days, 14 days, 22 days and 26 days, for microRNA microarray analysis. Dynamic microRNA profiles were identified that did not overlap or only partially overlapped with microRNAs reported to be involved in human liver development, hepatocyte regeneration or hepatic differentiation of liver-derived progenitor cells. A total of 61 microRNAs among 1205 human and 144 human viral microRNAs displayed consistent changes and were altered at least 2-fold between hUC-MSCs and hepatic differentiated hUC-MSCs. Among these microRNAs, 25 were over-expressed; this over-expression occurred either gradually or increased sharply and was maintained at a high level. A total of 36 microRNAs were under-expressed, with an expression pattern similar to that of the over-expressed microRNAs. The expression of the altered expressed microRNAs was also confirmed by quantitative reverse-transcription polymerase chain reaction. We also found that microRNAs involved in hepatic differentiation were not enriched in hepatocyte or hepatocellular carcinoma cells and can potentially target liver-enriched transcription factors and genes. The elucidation of the microRNA profile during the hepatic

  15. Chemical and radiative transfer modeling of the ISO-LWS Fabry-Perot spectra of Orion-KL water line

    CERN Document Server

    Lerate, M R; Barlow, M J; Viti, S; Swinyard, B M

    2010-01-01

    We present chemical and radiative transfer models for the many far-IR ortho- and para-H$_{2}$O lines that were observed from the Orion-KL region in high resolution Fabry-Perot (FP) mode by the Long Wavelength Spectrometer (LWS) on board the Infrared Space Observatory (ISO). The chemistry of the region was first studied by simulating the conditions in the different known components of Orion-KL: chemical models for a hot core, a plateau and a ridge were coupled with an accelerated Lambda$-iteration (ALI) radiative transfer model to predict H$_2$O line fluxes and profiles. Our models include the first 45 energy levels of ortho- and para-H$_{2}$O. We find that lines arising from energy levels below 560 K were best reproduced by a gas of density 3$\\times10^{5}$ cm$^{-3}$ at a temperature of 70-90 K, expanding at a velocity of 30 km s$^{-1}$ and with a H$_{2}$O/H$_{2}$ abundance ratio of the order of 2 - 3 $\\times$ 10$^{-5}$, similar to the abundance derived by Cernicharo et al. (2006). However, the model that best...

  16. Effect of cultivation line and peeling on food composition, taste characteristic, aroma profile, and antioxidant activity of Shiikuwasha (Citrus depressa Hayata) juice.

    Science.gov (United States)

    Asikin, Yonathan; Fukunaga, Hibiki; Yamano, Yoshimasa; Hou, De-Xing; Maeda, Goki; Wada, Koji

    2014-09-01

    Shiikuwasha (Citrus depressa Hayata) juice from four main cultivation lines subjected to two peeling practices (with or without peeling) were discriminated in terms of quality attributes, represented by sugar and organic acid composition, taste characteristic, aroma profile, and antioxidant activity. Shiikuwasha juice from these lines had diverse food compositions; 'Izumi kugani' juice had lower acidity but contained more ascorbic acid than that of other cultivation lines. The composition of volatile aroma components was influenced by fruit cultivation line, whereas its content was affected by peeling process (20.26-53.73 mg L(-1) in whole juice versus 0.82-1.58 mg L(-1) in flesh juice). Peeling also caused Shiikuwasha juice to be less astringent and acidic bitter and to lose its antioxidant activity. Moreover, the total phenolic and ascorbic acid content of Shiikuwasha juice positively influenced its antioxidant activity. Each fruit cultivation line had a distinct food composition, taste characteristic, and aroma profile. Peeling in Shiikuwasha juice production might reduce aftertaste, and thus might improve its palatability. Comprehensive information on the effect of cultivation line and peeling on quality attributes will be useful for Shiikuwasha juice production, and can be applied to juice production of similar small citrus fruits. © 2014 Society of Chemical Industry.

  17. On-line and Model-based Approaches to the Visual Control of Action

    OpenAIRE

    Zhao, Huaiyong; Warren, William H.

    2014-01-01

    Two general approaches to the visual control of action have emerged in last few decades, known as the on-line and model-based approaches. The key difference between them is whether action is controlled by current visual information or on the basis of an internal world model. In this paper, we evaluate three hypotheses: strong on-line control, strong model-based control, and a hybrid solution that combines on-line control with weak off-line strategies. We review experimental research on the co...

  18. Improvement plans for the RHIC/AGS on-line model environments

    Energy Technology Data Exchange (ETDEWEB)

    Brown,K.A.; Ahrens, L.; Beebe-Wang, J.; Morris, J.; Nemesure, S.; Robert-Demolaize, G.; Satogata, T.; Schoefer, V.; Tepikian, S.

    2009-08-31

    The on-line models for Relativistic Ion Collider (RHIC) and the RHIC pre-injectors (the AGS and the AGS Booster) can be thought of as containing our best collective knowledge of these accelerators. As we improve these on-line models we are building the framework to have a sophisticated model-based controls system. Currently the RHIC on-line model is an integral part of the controls system, providing the interface for tune control, chromaticity control, and non-linear chromaticity control. What we discuss in this paper is our vision of the future of the on-line model environment for RHIC and the RHIC preinjectors. Although these on-line models are primarily used as Courant-Snyder parameter calculators using live machine settings, we envision expanding these environments to encompass many other problem domains.

  19. Magnitude Differences in Bioactive Compounds, Chemical Functional Groups, Fatty Acid Profiles, Nutrient Degradation and Digestion, Molecular Structure, and Metabolic Characteristics of Protein in Newly Developed Yellow-Seeded and Black-Seeded Canola Lines.

    Science.gov (United States)

    Theodoridou, Katerina; Zhang, Xuewei; Vail, Sally; Yu, Peiqiang

    2015-06-10

    Recently, new lines of yellow-seeded (CS-Y) and black-seeded canola (CS-B) have been developed with chemical and structural alteration through modern breeding technology. However, no systematic study was found on the bioactive compounds, chemical functional groups, fatty acid profiles, inherent structure, nutrient degradation and absorption, or metabolic characteristics between the newly developed yellow- and black-seeded canola lines. This study aimed to systematically characterize chemical, structural, and nutritional features in these canola lines. The parameters accessed include bioactive compounds and antinutrition factors, chemical functional groups, detailed chemical and nutrient profiles, energy value, nutrient fractions, protein structure, degradation kinetics, intestinal digestion, true intestinal protein supply, and feed milk value. The results showed that the CS-Y line was lower (P ≤ 0.05) in neutral detergent fiber (122 vs 154 g/kg DM), acid detergent fiber (61 vs 99 g/kg DM), lignin (58 vs 77 g/kg DM), nonprotein nitrogen (56 vs 68 g/kg DM), and acid detergent insoluble protein (11 vs 35 g/kg DM) than the CS-B line. There was no difference in fatty acid