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Sample records for models line profiles

  1. Non-LTE profiles of the Al I autoionization lines. [for solar model atmospheres

    Science.gov (United States)

    Finn, G. D.; Jefferies, J. T.

    1974-01-01

    A non-LTE formulation is given for the transfer of radiation in the autoionizing lines of neutral aluminum at 1932 and 1936 A through both the Bilderberg and Harvard-Smithsonian model atmospheres. Numerical solutions for the common source function of these lines and their theoretical line profiles are calculated and compared with the corresponding LTE profiles. The results show that the non-LTE profiles provide a better match with the observations. They also indicate that the continuous opacity of the standard solar models should be increased in this wavelength region if the center-limb variations of observed and theoretical profiles of these lines are to be in reasonable agreement.

  2. High resolution measurements and modeling of auroral hydrogen emission line profiles

    Directory of Open Access Journals (Sweden)

    B. S. Lanchester

    2003-07-01

    Full Text Available Measurements in the visible wavelength range at high spectral resolution (1.3 Å have been made at Longyearbyen, Svalbard (15.8 E,78.2 N during an interval of intense proton precipitation. The shape and Doppler shift of hydrogen Balmer beta line profiles have been compared with model line profiles, using as input ion energy spectra from almost coincident passes of the FAST and DMSP spacecraft. The comparison shows that the simulation contains the important physical processes that produce the profiles, and confirms that measured changes in the shape and peak wave-length of the hydrogen profiles are the result of changing energy input. This combination of high resolution measurements with modeling provides a method of estimating the incoming energy and changes in flux of precipitating protons over Svalbard, for given energy and pitch-angle distributions. Whereas for electron precipitation, information on the incident particles is derived from brightness and brightness ratios which require at least two spectral windows, for proton precipitation the Doppler profile of resulting hydrogen emission is directly related to the energy and energy flux of the incident energetic protons and can be used to gather information about the source region. As well as the expected Doppler shift to shorter wavelengths, the measured profiles have a significant red-shifted component, the result of upward flowing emitting hydrogen atoms.Key words. Ionosphere (auroral ionosphere; particle precipitation – Magnetospheric physics (auroral phenomena

  3. High resolution measurements and modeling of auroral hydrogen emission line profiles

    Directory of Open Access Journals (Sweden)

    B. S. Lanchester

    Full Text Available Measurements in the visible wavelength range at high spectral resolution (1.3 Å have been made at Longyearbyen, Svalbard (15.8 E,78.2 N during an interval of intense proton precipitation. The shape and Doppler shift of hydrogen Balmer beta line profiles have been compared with model line profiles, using as input ion energy spectra from almost coincident passes of the FAST and DMSP spacecraft. The comparison shows that the simulation contains the important physical processes that produce the profiles, and confirms that measured changes in the shape and peak wave-length of the hydrogen profiles are the result of changing energy input. This combination of high resolution measurements with modeling provides a method of estimating the incoming energy and changes in flux of precipitating protons over Svalbard, for given energy and pitch-angle distributions. Whereas for electron precipitation, information on the incident particles is derived from brightness and brightness ratios which require at least two spectral windows, for proton precipitation the Doppler profile of resulting hydrogen emission is directly related to the energy and energy flux of the incident energetic protons and can be used to gather information about the source region. As well as the expected Doppler shift to shorter wavelengths, the measured profiles have a significant red-shifted component, the result of upward flowing emitting hydrogen atoms.

    Key words. Ionosphere (auroral ionosphere; particle precipitation – Magnetospheric physics (auroral phenomena

  4. Hydrogen Balmer alpha intensity distributions and line profiles from multiple scattering theory using realistic geocoronal models

    Science.gov (United States)

    Anderson, D. E., Jr.; Meier, R. R.; Hodges, R. R., Jr.; Tinsley, B. A.

    1987-01-01

    The H Balmer alpha nightglow is investigated by using Monte Carlo models of asymmetric geocoronal atomic hydrogen distributions as input to a radiative transfer model of solar Lyman-beta radiation in the thermosphere and atmosphere. It is shown that it is essential to include multiple scattering of Lyman-beta radiation in the interpretation of Balmer alpha airglow data. Observations of diurnal variation in the Balmer alpha airglow showing slightly greater intensities in the morning relative to evening are consistent with theory. No evidence is found for anything other than a single sinusoidal diurnal variation of exobase density. Dramatic changes in effective temperature derived from the observed Balmer alpha line profiles are expected on the basis of changing illumination conditions in the thermosphere and exosphere as different regions of the sky are scanned.

  5. BEYOND THE STANDARD MODEL OF THE DISC–LINE SPECTRAL PROFILES FROM BLACK HOLE ACCRETION DISCS

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    Vjaceslav Sochora

    2014-08-01

    Full Text Available The strong gravitational field of a black hole has distinct effects on the observed profile of a spectral line from an accretion disc near a black hole. The observed profile of the spectral line is broadened and skewed by a fast orbital motion and redshifted by a gravitational field. These effects can help us to constrain the parameters of a system with a black hole, both in active galactic nuclei and in a stellar-mass black hole. Here we explore the fact that an accretion disc emission can be mathematically imagined as a superposition of radiating accretion rings that extend from the inner edge to the outer rim of the disc, with some radially varying emissivity. In our work, we show that a characteristic double-horn profile of several radially confined (relatively narrow accretion rings or belts could be recognized by the planned instruments onboard future satellites (such as the proposed ESA Large Observatory for X-ray Timing.

  6. Measurement and modeling of nitrogen resonance line profiles from an electrodeless discharge lamp

    International Nuclear Information System (INIS)

    Wood, D.R.; Skinner, G.B.; Lifshitz, A.

    1987-01-01

    Experimental profiles of the 1200 A resonance triplet of atomic nitrogen were measured for a variety of operating conditions of an end-on electrodeless lamp, and corresponding absorption curves were calculated. Each source profile was determined by fitting parameters to an empirical two-layer model, then convoluting with the instrumental function for comparison with experimental data. Each three-component profile was fitted with three adjustable parameters: an absorption parameter for each of the two layers and a third absorption parameter to adjust for radiation trapping. Curves of absorption as a function of atom concentration, calculated from these profiles, are very similar to the shock tube calibrations of Thielen and Roth in which a source of similar design has been used

  7. Theoretical Emission-Line Profiles of Active Galactic Nuclei and the Unified Model. I. The Face-on Torus

    Science.gov (United States)

    Quintilio, R.; Viegas, S. M.

    1997-01-01

    Theoretical emission-line profiles are obtained for active galactic nuclei (AGNs) taking into account the presence of an obscuring torus around the central energy source. For the sake of simplicity, the torus is represented by a cylindrical shell characterized by the inner and outer radius and the opening angle. In this paper we discuss the results with angle of sight equal to 0, i.e., for a face-on torus. Different line profiles are obtained following the torus parameters. The line profiles may show more than one peak and bumps, depending on the torus dimensions. The main parameter determining the number of peaks or bumps is the opening angle. Thus, the observed line shape may be a good indicator of the torus characteristics. As an example, the fit to the observed [O III] λ5007 emission line of NGC 4151 is presented. The model reproduces the FWHM and the asymmetrical bumps observed. Partially supported by the Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP) under Grant 92/4335-9.

  8. Observation-based Model of Evolution of the Lyman-Alpha Line Profile During the Solar Cycle

    Science.gov (United States)

    Kowalska-Leszczyńska, I.; Bzowski, M.; Sokol, J. M.; Kubiak, M. A.

    2017-12-01

    Recent studies of interstellar neutral (ISN) hydrogen observed by the Interstellar Boundary Explorer (IBEX) suggested that present understanding of the radiation pressure acting on hydrogen atoms in the heliosphere should be revised. There is a significant discrepancy between theoretical predictions of the ISN H signal based on the currently used model of the solar Lyman-alpha profile and the signal due to interstellar neutral H observed by IBEX-Lo in energy range from 0.01 to 0.07 keV. We have developed a new model of evolution of the solar Lyman-alpha profile that takes into account all available observations of the full-disk solar Lyman-alpha profiles from SUMER/SOHO, provided by Lemaire et al. 2015, and covering practically the entire solar cycle. The model has three components that reproduce different features of the profile. The main shape of the emission line that is produced in the chromosphere is modelled by the Kappa function; the central reversal due to absorption in the transition region is modelled by the Gauss function; the spectral background is represented by the linear function. We verified that with this model, all of the individual profiles can be reproduced quite accurately. The profile for an arbitrary day is parameterized by just one parameter either the composite Lyman-alpha flux available from LASP or alternatively by the F10.7 solar radio flux, however we have noticed that the agreement of the model with the data is a little worse but still within the uncertainties of the data for the latter one The new model features potentially important differences in comparison with the model by Tarnopolski & Bzowski 2007, which was based on a limited set of observations. In addition to the model itself, we will demonstrate some consequences resulting from this model on predicted distributions of interstellar hydrogen in the inner heliosphere, as well as on probabilities of survival calculated for heliospheric energetic neutral atoms.

  9. Narrow line profiles and interacting gas flows in active galaxies

    International Nuclear Information System (INIS)

    Mardaljevic, J.; Raine, D.J.; Smith, M.D.

    1986-01-01

    The 'catapult model' of the narrow line region involves both infalling and outflowing clouds interacting with an outflowing wind. The emission line profiles in this model are derived and the results compared with observation. Supersonic and subsonic winds in the interaction zone produce distinct line profiles, both of which are observed. Flat-topped profiles, the presence of broad wings, asymmetry and line shifts are discussed. A relationship between profile shape and X-ray properties is predicted. (author)

  10. CONTINUUM INTENSITY AND [O i] SPECTRAL LINE PROFILES IN SOLAR 3D PHOTOSPHERIC MODELS: THE EFFECT OF MAGNETIC FIELDS

    Energy Technology Data Exchange (ETDEWEB)

    Fabbian, D.; Moreno-Insertis, F., E-mail: damian@iac.es, E-mail: fmi@iac.es [Instituto de Astrofísica de Canarias (IAC), E-38205 La Laguna, Tenerife (Spain)

    2015-04-01

    The importance of magnetic fields in three-dimensional (3D) magnetoconvection models of the Sun’s photosphere is investigated in terms of their influence on the continuum intensity at different viewing inclination angles and on the intensity profile of two [O i] spectral lines. We use the RH numerical radiative transfer code to perform a posteriori spectral synthesis on the same time series of magnetoconvection models used in our publications on the effect of magnetic fields on abundance determination. We obtain a good match of the synthetic disk-center continuum intensity to the absolute continuum values from the Fourier Transform Spectrometer (FTS) observational spectrum; the match of the center-to-limb variation synthetic data to observations is also good, thanks, in part, to the 3D radiation transfer capabilities of the RH code. The different levels of magnetic flux in the numerical time series do not modify the quality of the match. Concerning the targeted [O i] spectral lines, we find, instead, that magnetic fields lead to nonnegligible changes in the synthetic spectrum, with larger average magnetic flux causing both of the lines to become noticeably weaker. The photospheric oxygen abundance that one would derive if instead using nonmagnetic numerical models would thus be lower by a few to several centidex. The inclusion of magnetic fields is confirmed to be important for improving the current modeling of the Sun, here in particular in terms of spectral line formation and of deriving consistent chemical abundances. These results may shed further light on the still controversial issue regarding the precise value of the solar oxygen abundance.

  11. The consequences of chromosomal aneuploidy on gene expression profiles in a cell line model for prostate carcinogenesis.

    Science.gov (United States)

    Phillips, J L; Hayward, S W; Wang, Y; Vasselli, J; Pavlovich, C; Padilla-Nash, H; Pezullo, J R; Ghadimi, B M; Grossfeld, G D; Rivera, A; Linehan, W M; Cunha, G R; Ried, T

    2001-11-15

    Here we report the genetic characterization of immortalized prostate epithelial cells before and after conversion to tumorigenicity using molecular cytogenetics and microarray technology. We were particularly interested to analyze the consequences of acquired chromosomal aneuploidies with respect to modifications of gene expression profiles. Compared with nontumorigenic but immortalized prostate epithelium, prostate tumor cell lines showed high levels of chromosomal rearrangements that led to gains of 1p, 5, 11q, 12p, 16q, and 20q and losses of 1pter, 11p, 17, 20p, 21, 22, and Y. Of 5700 unique targets on a 6.5K cDNA microarray, approximately 3% were subject to modification in expression levels; these included GRO-1, -2, IAP-1,- 2, MMP-9, and cyclin D1, which showed increased expression, and TRAIL, BRCA1, and CTNNA, which showed decreased expression. Thirty % of expression changes occurred in regions the genomic copy number of which remained balanced. Of the remainder, 42% of down-regulated and 51% of up-regulated genes mapped to regions present in decreased or increased genomic copy numbers, respectively. A relative gain or loss of a chromosome or chromosomal arm usually resulted in a statistically significant increase or decrease, respectively, in the average expression level of all of the genes on the chromosome. However, of these genes, very few (e.g., 5 of 101 genes on chromosome 11q), and in some instances only two genes (MMP-9 and PROCR on chromosome 20q), were overexpressed by > or =1.7-fold when scored individually. Cluster analysis by gene function suggests that prostate tumorigenesis in these cell line models involves alterations in gene expression that may favor invasion, prevent apoptosis, and promote growth.

  12. Biophysical Profiling of Tumor Cell Lines

    Directory of Open Access Journals (Sweden)

    Frederick Coffman

    2011-01-01

    Full Text Available Despite significant differences in genetic profiles, cancer cells share common phenotypic properties, including membrane-associated changes that facilitate invasion and metastasis. The Corning Epic® optical biosensor was used to monitor dynamic mass rearrangements within and proximal to the cell membrane in tumor cell lines derived from cancers of the colon, bone, cervix, lung and breast. Data was collected in real time and required no exogenously added signaling moiety (signal-free technology. Cell lines displayed unique profiles over the time-courses: the time-courses all displayed initial signal increases to maximal values, but the rate of increase to those maxima and the value of those maxima were distinct for each cell line. The rate of decline following the maxima also differed among cell lines. There were correlations between the signal maxima and the observed metastatic behavior of the cells in xenograft experiments; for most cell types the cells that were more highly metastatic in mice had lower time-course maxima values, however the reverse was seen in breast cancer cells. The unique profiles of these cell lines and the correlation of at least one profile characteristic with metastatic behavior demonstrate the potential utility of biophysical tumor cell profiling in the study of cancer biology.

  13. Variety of Polarized Line Profiles in Interacting Supernovae

    Science.gov (United States)

    Hoffman, Jennifer L.; Huk, L. N.; Peters, C. L.

    2013-01-01

    The dense circumstellar material that creates strong emission lines in the spectra of interacting supernovae also gives rise to complex line polarization behavior. Viewed in polarized light, the emission line profiles of these supernovae encode information about the geometrical and optical characteristics of their surrounding circumstellar material (CSM) that is inaccessible by other observational techniques. To facilitate quantitative interpretation of these spectropolarimetric signatures, we have created a large grid of model polarized line profiles using a three-dimensional radiative transfer code that simulates polarization via electron and resonant/fluorescent line scattering. The simulated polarized lines take on an array of profile shapes that vary with viewing angle and CSM properties. We present the major results from the grid and investigate the dependence of polarized line profiles on CSM characteristics including temperature, optical depth, and geometry. These results will allow more straightforward interpretation of polarized line profiles in interacting supernovae than has previously been possible. This research is supported by the National Science Foundation through the AAG program and the XSEDE collaboration, and uses the resources of the Texas Advanced Computing Center.

  14. Non-LTE profiles of strong solar lines

    Science.gov (United States)

    Schneeberger, T. J.; Beebe, H. A.

    1976-01-01

    The complete linearization method is applied to the formation of strong lines in the solar atmosphere. Transitions in Na(I), Mg(I), Ca(I), Mg(II), and Ca(II) are computed with a standard atmosphere and microturbulent velocity model. The computed profiles are compared to observations at disk center.

  15. Models of Emission-Line Profiles and Spectral Energy Distributions to Characterize the Multi-Frequency Properties of Active Galactic Nuclei

    Directory of Open Access Journals (Sweden)

    Giovanni La Mura

    2017-11-01

    Full Text Available The spectra of active galactic nuclei (AGNs are often characterized by a wealth of emission lines with different profiles and intensity ratios that lead to a complicated classification. Their electromagnetic radiation spans more than 10 orders of magnitude in frequency. In spite of the differences between various classes, the origin of their activity is attributed to a combination of emitting components, surrounding an accreting supermassive black hole (SMBH, in the unified model. Currently, the execution of sky surveys, with instruments operating at various frequencies, provides the possibility to detect and to investigate the properties of AGNs on very large statistical samples. As a result of the spectroscopic surveys that allow the investigation of many objects, we have the opportunity to place new constraints on the nature and evolution of AGNs. In this contribution, we present the results obtained by working on multi-frequency data, and we discuss their relations with the available optical spectra. We compare our findings with the AGN unified model predictions, and we present a revised technique to select AGNs of different types from other line-emitting objects. We discuss the multi-frequency properties in terms of the innermost structures of the sources.

  16. Velocity profiles of high-excitation molecular hydrogen lines

    International Nuclear Information System (INIS)

    Moorhouse, A.; Brand, P.W.J.L.; Burton, M.G.

    1990-01-01

    Profiles of three lines of molecular hydrogen near 2.2 μm, originating from widely spaced energy levels, have been measured at a resolution of 32 km s -1 at Peak 1 in the Orion molecular outflow. The three lines [1 - O S(1), 2 - 1 S(1) and 3 - 2 S(3)] are found to have identical profiles. This result rules out any significant contribution to the population of the higher energy levels of molecular hydrogen at Peak 1 by fluorescence, is inconsistent with multiple C-shock models which produce higher excitation temperatures at larger shock velocities, and is generally consistent with emission from multiple J-type shocks. (author)

  17. On the effects of rotation on interstellar molecular line profiles

    International Nuclear Information System (INIS)

    Adelson, L.M.; Chunming Leung

    1988-01-01

    Theoretical models are constructed to study the effects of systematic gas rotation on the emergent profiles of interstellar molecular lines, in particular the effects of optical depth and different velocity laws. Both rotational and radial motions (expansion or contraction) may produce similar asymmetric profiles, but the behaviour of the velocity centroid of the emergent profile over the whole cloud (iso-centroid maps) can be used to distinguish between these motions. Iso-centroid maps can also be used to determine the location and orientation of the rotation axis and of the equatorial axis. For clouds undergoing both radial and rotational motion, the component of the centroid due to the rotational motion can be separated from that due to the radial motion. Information on the form of the rotational velocity law can also be derived. (author)

  18. Spectral line profiles in weakly turbulent plasmas

    International Nuclear Information System (INIS)

    Capes, H.; Voslamber, D.

    1976-07-01

    The unified theory of line broadening by electron perturbers is generalized to include the case of a weakly turbulent plasma. The collision operator in the line shape expression is shown to be the sum of two terms, both containing effects arising from the non-equilibrium nature of the plasma. One of the two terms represents the influence of individual atom-particle interactions occuring via the nonequilibrium dielectric plasma medium. The other term is due to the interaction of the atom with the turbulent waves. Both terms contain damping and diffusion effects arising from the plasma turbulence

  19. Performance study of quadrupole with broken line profile pole tip

    International Nuclear Information System (INIS)

    Fan Mingwu; Zhang Tianjue; Chu Chengjie

    1997-01-01

    Most of quadrupole used for beam focusing possess hyperbola profile tip. To simplify machining processes and ensure the assembling accuracy, a broken line profile pole tip is adapted instead of hyperbola. The results of the magnetic field simulation codes and the tests show the good quality field generated by such configuration: not only more uniform field gradient, but also field more concentrated at useful area. These types of quadrupole are used at CYCIAE-30 cyclotron and HI-13 tandem transportation lines

  20. What Sets the Line Profiles in Tidal Disruption Events?

    Science.gov (United States)

    Roth, Nathaniel; Kasen, Daniel

    2018-03-01

    We investigate line formation in gas that is outflowing and optically thick to electron scattering, as may be expected following the tidal disruption of a star by a supermassive black hole. Using radiative transfer calculations, we show that the optical line profiles produced by expanding TDE outflows most likely are primarily emission features, rather than the P-Cygni profiles seen in most supernova spectra. This is a result of the high line excitation temperatures in the highly irradiated TDE gas. The outflow kinematics cause the emission peak to be blueshifted and have an asymmetric red wing. Such features have been observed in some TDE spectra, and we propose that these may be signatures of outflows. We also show that non-coherent scattering of hot electrons can broaden the emission lines by ∼10,000 km s‑1, such that the line width in some TDEs may be set by the electron scattering optical depth rather than the gas kinematics. The scattering-broadened line profiles produce distinct, wing-shaped profiles that are similar to those observed in some TDE spectra. The narrowing of the emission lines over time in these observed events may be related to a drop in density rather than a drop in line-of-sight velocity.

  1. On the analysis of line profile variations: A statistical approach

    International Nuclear Information System (INIS)

    McCandliss, S.R.

    1988-01-01

    This study is concerned with the empirical characterization of the line profile variations (LPV), which occur in many of and Wolf-Rayet stars. The goal of the analysis is to gain insight into the physical mechanisms producing the variations. The analytic approach uses a statistical method to quantify the significance of the LPV and to identify those regions in the line profile which are undergoing statistically significant variations. Line positions and flux variations are then measured and subject to temporal and correlative analysis. Previous studies of LPV have for the most part been restricted to observations of a single line. Important information concerning the range and amplitude of the physical mechanisms involved can be obtained by simultaneously observing spectral features formed over a range of depths in the extended mass losing atmospheres of massive, luminous stars. Time series of a Wolf-Rayet and two of stars with nearly complete spectral coverage from 3940 angstrom to 6610 angstrom and with spectral resolution of R = 10,000 are analyzed here. These three stars exhibit a wide range of both spectral and temporal line profile variations. The HeII Pickering lines of HD 191765 show a monotonic increase in the peak rms variation amplitude with lines formed at progressively larger radii in the Wolf-Rayet star wind. Two times scales of variation have been identified in this star: a less than one day variation associated with small scale flickering in the peaks of the line profiles and a greater than one day variation associated with large scale asymmetric changes in the overall line profile shapes. However, no convincing period phenomena are evident at those periods which are well sampled in this time series

  2. The XMM-Newton Iron Line Profile of NGC 3783

    Science.gov (United States)

    Reeves, J. N.; Nandra, K.; George, I. M.; Pounds, K. A.; Turner, T. J.; Yaqoob, T.

    2003-01-01

    We report on observations of the iron K line in the nearby Seyfert 1 galaxy, NGC 3783, obtained in a long, 2 orbit (approx. 240 ks) XMM-Newton observation. The line profile obtained exhibits two strong narrow peaks at 6.4 keV and at 7.0 keV, with measured line equivalent widths of 120 and 35 eV respectively. The 6.4 keV emission is the K(alpha) line from near neutral Fe, whilst the 7.0 keV feature probably originates from a blend of the neutral Fe K(beta) line and the Hydrogen-like line of Fe at 6.97 keV. The relatively narrow velocity width of the K(alpha) line (approx. less than 5000 km/s), its lack of response to the continuum emission on short timescales and the detection of a neutral Compton reflection component are all consistent with a distant origin in Compton-thick matter such as the putative molecular torus. A strong absorption line from highly ionized iron (at 6.67 keV) is detected in the time-averaged iron line profile, whilst the depth of the feature appears to vary with time, being strongest when the continuum flux is higher. The iron absorption line probably arises from the highest ionization component of the known warm absorber in NGC 3783, with an ionization of log xi approx 3 and column density of N(sub H) approx. 5 x 10(exp 22)/sq cm and may originate from within 0.1 pc of the nucleus. A weak red-wing to the iron K line profile is also detected below 6.4 keV. However when the effect of the highly ionized warm absorber on the underlying continuum is taken into account, the requirement for a relativistic iron line component from the inner disk is reduced.

  3. LINE PROFILE ASYMMETRIES AND THE CHROMOSPHERIC FLARE VELOCITY FIELD

    Energy Technology Data Exchange (ETDEWEB)

    Kuridze, D.; Mathioudakis, M.; Kennedy, M.; Keenan, F. P. [Astrophysics Research Centre, School of Mathematics and Physics, Queen’s University Belfast BT7 1NN (United Kingdom); Simões, P. J. A.; Voort, L. Rouppe van der; Fletcher, L. [SUPA School of Physics and Astronomy, University of Glasgow, Glasgow G12 8QQ (United Kingdom); Carlsson, M.; Jafarzadeh, S. [Institute of Theoretical Astrophysics, University of Oslo, P.O. Box 1029 Blindern, NO-0315 Oslo (Norway); Allred, J. C.; Kowalski, A. F. [Department of Astronomy, University of Maryland, College Park, MD 20742 (United States); Graham, D. [INAF-Ossevatorio Astrofisico di Arcetri, I-50125 Firenze (Italy)

    2015-11-10

    The asymmetries observed in the line profiles of solar flares can provide important diagnostics of the properties and dynamics of the flaring atmosphere. In this paper the evolution of the Hα and Ca ii λ8542 lines are studied using high spatial, temporal, and spectral resolution ground-based observations of an M1.1 flare obtained with the Swedish 1 m Solar Telescope. The temporal evolution of the Hα line profiles from the flare kernel shows excess emission in the red wing (red asymmetry) before flare maximum and excess in the blue wing (blue asymmetry) after maximum. However, the Ca ii λ8542 line does not follow the same pattern, showing only a weak red asymmetry during the flare. RADYN simulations are used to synthesize spectral line profiles for the flaring atmosphere, and good agreement is found with the observations. We show that the red asymmetry observed in Hα is not necessarily associated with plasma downflows, and the blue asymmetry may not be related to plasma upflows. Indeed, we conclude that the steep velocity gradients in the flaring chromosphere modify the wavelength of the central reversal in the Hα line profile. The shift in the wavelength of maximum opacity to shorter and longer wavelengths generates the red and blue asymmetries, respectively.

  4. Repetitive display system of line profiles for Doppler broadening measurement

    International Nuclear Information System (INIS)

    Mohri, A.; Narihara, K.; Haba, K.

    1982-10-01

    Line profiles of impurities in visible and ultraviolet regions are repetitively displayed on a CRT with an interval of 250 mu s or 500 mu s, using a system composed of a Czerny-Turner monochromator with 1 m F.L., a self-resonant optical scanner, a photomultiplier shielded against hard X-rays and electronic circuits. The profile resolution is 0.035 nm FWHM. This system can be used in the environment of strong hard X-rays. (author)

  5. Dynamical model for the narrow line region of Seyfert galaxies

    Energy Technology Data Exchange (ETDEWEB)

    Mobasher, B.; Raine, D.J.

    1987-09-01

    Detailed emission line ratios and profiles have been computed for the 'catapult' model of the NLR. According to this model the emission lines arise from interstellar clouds interacting with a wind from the central source. For clouds which are ejected by the ram pressure of the wind agreement is found with average Seyfert 2 line ratios for the main diagnostic lines, within the 2sigma dispersions. This also gives the observed constancy of line profiles for different lines. The Seyfert 1 line ratios are obtained by adding a component of clouds which are not ejected. The predicted line ratios (relative to (O III)lambda5007) for Seyfert 1s agree to better than 1sigma with the observed averages.

  6. On-line diffusion profile of a lipophilic model dye in different depths of a hair follicle in human scalp skin.

    Science.gov (United States)

    Grams, Ylva Y; Whitehead, Lynne; Lamers, Gerda; Sturmann, Nico; Bouwstra, Joke A

    2005-10-01

    In skin and hair research, drug targeting to the hair follicle is of great interest in the treatment of skin diseases. The aim of this study is to visualize on-line the diffusion processes of a model fluorophore into the hair follicle at different depths using fresh human scalp skin and confocal laser scanning microscopy. Up to a depth of 500 microm in the skin, a fast increase of fluorescence is observed in the gap followed by accumulation of the dye in the hair cuticle. Penetration was also observed via the stratum corneum and the epidermis. Little label reached depths greater than 2000 microm. Fat cells accumulated the label fastest, followed by the cuticular area and the outer root sheath of the hair follicle. Sweat glands revealed very low staining, whereas the bulb at a depth of 4000 microm was visualized only by autofluorescence. From this study, we conclude that on-line visualization is a promising technique to access diffusion processes in deep skin layers even on a cellular level. Furthermore, we conclude that the gap and the cuticle play an important role in the initial diffusion period with the label in the cuticle originating from the gap.

  7. line profile variability of seven southern Be stars

    International Nuclear Information System (INIS)

    Mennickent, R.E.

    1991-01-01

    The results of spectroscopic observations of six B0-B4e and one B7e stars at the Manuel Foster Observatory (Chile) during 1984-87 are reported. By means of photographic spectroscopy (20 A/mm), equivalent widths, peak separations and V/R ratios were obtained for a total of 106 Hβ and 7 Hγ line profiles. Emission episodes in Hβ were detected in 27 CMa and λ Pav, lasting at least 5 months and 18 days respectively. Significant variations in the equivalent width of the Hβ emission line W β in time scales of months were found in κ CMa, PP Car and QY Car

  8. IUE observations of Si and C lines and comparison with non-LTE models

    Science.gov (United States)

    Kamp, L. W.

    1982-01-01

    Classical model atmosphere techniques are applied to analyze IUE spectra, and to determine abundances, effective temperatures and gravities. Measurements of the equivalent widths and other properties of the line profiles of 24 photospheric lines of Si II, Si III, Si IV, C II, C III and C IV are presented in the range of 1175-1725 A for seven B and two O stars. Observed line profiles are compared with theoretical profiles computed using non-LTE theory and models, and using line-blanketed model atmospheres. Agreement is reasonably good, although strong lines are calculated to be systematically stronger than those observed, while the reverse occurs for weak lines, and empirical profiles have smaller wings than theoretical profiles. It is concluded that the present theory of line formation when used with solar abundances, represents fairly well observed UV photospheric lines of silicon and carbon ions in the atmospheres of main sequence stars of types B5-O9.

  9. STRONG FIELD EFFECTS ON EMISSION LINE PROFILES: KERR BLACK HOLES AND WARPED ACCRETION DISKS

    International Nuclear Information System (INIS)

    Wang Yan; Li Xiangdong

    2012-01-01

    If an accretion disk around a black hole is illuminated by hard X-rays from non-thermal coronae, fluorescent iron lines will be emitted from the inner region of the accretion disk. The emission line profiles will show a variety of strong field effects, which may be used as a probe of the spin parameter of the black hole and the structure of the accretion disk. In this paper, we generalize the previous relativistic line profile models by including both the black hole spinning effects and the non-axisymmetries of warped accretion disks. Our results show different features from the conventional calculations for either a flat disk around a Kerr black hole or a warped disk around a Schwarzschild black hole by presenting, at the same time, multiple peaks, rather long red tails, and time variations of line profiles with the precession of the disk. We show disk images as seen by a distant observer, which are distorted by the strong gravity. Although we are primarily concerned with the iron K-shell lines in this paper, the calculation is general and is valid for any emission lines produced from a warped accretion disk around a black hole.

  10. Iron K Lines from Accretion Disks: Models for Line Production and Spectroscopic Constraints

    Science.gov (United States)

    Kallman, Timothy; Palmeri, Patrick

    2004-01-01

    Measured profiles of the iron K lines provide important dynamical information about emitting matrial in compact objects. However, much of the modeling work which has been used to infer the location and origin of line observed from AGN and galactic black hole sources is based on highly simplified assumptions about the microphysics of K line emission. In particular, many of the intrinsic line energies, widths and emissivities are based on central-field atomic calculations. We present the results of new calculations of the quantities for the entire iron isonuclear sequence, and demonstrate that the intrinsic K line spectra contain considerably more complexity than has been previously considered. We also present calculations of iron K emission and absorption spectra which include the new data, including the local spectrum radiated from an X-ray illuminated accretion disk. The implications for the interpretation of observed iron K lines from black hole sources will be discussed.

  11. Pomegranate extract demonstrate a selective estrogen receptor modulator profile in human tumor cell lines and in vivo models of estrogen deprivation.

    Science.gov (United States)

    Sreeja, Sreekumar; Santhosh Kumar, Thankayyan R; Lakshmi, Baddireddi S; Sreeja, Sreeharshan

    2012-07-01

    Selective estrogen receptor modulators (SERMs) are estrogen receptor (ER) ligands exhibiting tissue-specific agonistic or antagonistic biocharacter and are used in the hormonal therapy for estrogen-dependent breast cancers. Pomegranate fruit has been shown to exert antiproliferative effects on human breast cancer cells in vitro. In this study, we investigated the tissue-specific estrogenic/antiestrogenic activity of methanol extract of pericarp of pomegranate (PME). PME was evaluated for antiproliferative activity at 20-320 μg/ml on human breast (MCF-7, MDA MB-231) endometrial (HEC-1A), cervical (SiHa, HeLa), ovarian (SKOV3) carcinoma and normal breast fibroblast (MCF-10A) cells. Competitive radioactive binding studies were carried out to ascertain whether PME interacts with ER. The reporter gene assay measured the estrogenic/antiestrogenic activity of PME in MCF-7 and MDA MB-231 cells transiently transfected with plasmids coding estrogen response elements with a reporter gene (pG5-ERE-luc) and wild-type ERα (hEG0-ER). PME inhibited the binding of [³H] estradiol to ER and suppressed the growth and proliferation of ER-positive breast cancer cells. PME binds ER and down-regulated the transcription of estrogen-responsive reporter gene transfected into breast cancer cells. The expressions of selected estrogen-responsive genes were down-regulated by PME. Unlike 17β-estradiol [1 mg/kg body weight (BW)] and tamoxifen (10 mg/kg BW), PME (50 and 100 mg/kg BW) did not increase the uterine weight and proliferation in ovariectomized mice and its cardioprotective effects were comparable to that of 17β-estradiol. In conclusion, our findings suggest that PME displays a SERM profile and may have the potential for prevention of estrogen-dependent breast cancers with beneficial effects in other hormone-dependent tissues. Copyright © 2012 Elsevier Inc. All rights reserved.

  12. H α and H β Raman scattering line profiles of the symbiotic star AG Pegasi

    Science.gov (United States)

    Lee, Seong-Jae; Hyung, Siek

    2018-04-01

    The H α and H β line profiles of the symbiotic star AG Pegasi, observed in 1998 September (phase ϕ = 10.24), display top narrow double Gaussian components and bottom broad components (FWHM = 200-400 km s-1). The photoionization model indicates that the ionized zone, responsible for the hydrogen Balmer and Lyman lines, is radiation-bounded, with a hydrogen gas number density of nH ˜ 109.85 cm-3 and a gas temperature of Te = 12 000-15 000 K. We have carried out Monte Carlo simulations to fit the Raman scattering broad wings, assuming that the hydrogen Ly β and Ly γ lines emitted within the radiation-bounded H II zone around a white dwarf have the same double Gaussian line profile shape as the hydrogen Balmer lines. The simulation shows that the scattering H I zones are attached to (or located just outside) the inner H II shells. The best fit to the observed broad H I line profiles indicates that the column density of the scattering neutral zone is NH ≃ 3-5 × 1019 cm-2. We have examined whether the geometrical structure responsible for the observed H α and H β line profiles is a bipolar conical shell structure, consisting of the radiation-bounded ionized zone and the outer material bounded neutral zone. The expanding bipolar structure might be two opposite regions of the common envelope or the outer shell of the Roche lobe around the hot white dwarf, formed through the mass inflows from the giant star and pushed out by the fast winds from the hot white dwarf.

  13. Line Profile Measurements of the Lunar Exospheric Sodium

    Science.gov (United States)

    Oliversen, Ronald J.; Mierkiewicz, Edwin J.; Line, Michael R.; Roesler, Fred L.; Lupie, Olivia L.

    2012-01-01

    We report ongoing results of a program to measure the lunar sodium exospheric line profile from near the lunar limb out to two lunar radii (approx 3500 km). These observations are conducted from the National Solar Observatory McMath-Pierce telescope using a dual-etalon Fabry-Perot spectrometer with a resolving power of 180,600 (1.7 km/s) to measure line widths and velocity shifts of the Na D2 (5889 950 A) emission line in equatorial and polar regions at different lunar phases. The typical field of view (FOV) is 3 arcmin (approx 360 km) with an occasional smaller 1 arcmin FOV used right at the limb edge. The first data were obtained from full Moon to 3 days following full Moon (waning phase) in March 2009 as part of a demonstration run aimed at establishing techniques for a thorough study of temperatures and velocity variations in the lunar sodium exosphere. These data indicate velocity displacements from different locations off the lunar limb range between 150 and 600 m/s from the lunar rest velocity with a precision of +/- 20 to +/- 50 m/s depending on brightness. The measured Doppler line widths for observations within 10.5 arcmin of the east and south lunar limbs for observations between 5 deg and 40 deg lunar phase imply temperatures ranging decreasing from 3250 +/- 260K to 1175 +/- 150K. Additional data is now being collected on a quarterly basis since March 2011 and preliminary results will be reported.

  14. LINE-BY-LINE CALCULATION OF SPECTRA FROM DIATOMIC MOLECULES AND ATOMS ASSUMING A VOIGT LINE PROFILE

    Science.gov (United States)

    Whiting, E. E.

    1994-01-01

    This program predicts the spectra resulting from electronic transitions of diatomic molecules and atoms in local thermodynamic equilibrium. The program produces a spectrum by accounting for the contribution of each rotational and atomic line considered. The integrated intensity of each line is distributed in the spectrum by an approximate Voigt profile. The program can produce spectra for optically thin gases or for cases where simultaneous emission and absorption occurs. In addition, the program can compute the spectrum resulting from the absorption of incident radiation by a column of cold gas or the high-temperature, self-absorbed emission spectrum from a nonisothermal gas. The computed spectrum can be output directly or combined with a slit function and sensitivity calibration to predict the output of a grating spectrograph or a fixed wavelength radiometer. Specifically, the program has the capability to include the following features in any computations: (1) Parallel transitions, in which spin splitting and lambda doubling are ignored (ignoring spin splitting and/or lambda doubling means that the total multiple strength is assumed to reside in a single "effective" line), (2) Perpendicular transitions, in which spin splitting and lambda doubling are ignored, (3) Sigma Pi transitions, in which lambda doubling is ignored, (4) Atomic lines, (5) Option to terminate rotational line calculations when the molecule dissociates due to rotation, (6) Option to include the alternation of line intensities for homonuclear molecules, (7) Use of an approximate Voigt profile for the line shape, and (8) Radiative energy transport in a nonisothermal gas. The output options available in the program are: (1) Tabulation of the spontaneous emission spectrum (i.e., optically thin spectrum) for a 1.0 cm path length, (2) Tabulation of the "true" spectrum, which incorporates spontaneous emission, induced emission, absorption, and externally incident radiation through the equation of

  15. Calculated Resonance Line Profiles of [Mg II], [C II], and [Si IV] in the Solar Atmosphere

    Science.gov (United States)

    Avrett, E.; Landi, E.; McKillop, S.

    2013-12-01

    NASA's Interface Region Imaging Spectrograph space mission, launched 2013 June 27, is intended to study the structure of the solar chromosphere and the transition region between the chromosphere and corona. The spectral lines to be observed include the Mg II k line at 2796.5 Å, the C II 1334.5 Å line, and the Si IV line at 1393.8 Å, which are formed in the middle chromosphere, the upper chromosphere, and the lower transition region, respectively. Here we calculate the profiles of these lines from four models of the solar atmosphere, intended to represent the faint and mean internetwork, a network lane, and bright network. We show how the profiles change from the center of the solar disk toward the limb of the Sun and in response to outflows and inflows. These results are intended to cover the range of expected quiet-Sun observations and assist in their interpretation. We expect that the observations will lead to improvements in the models, which can then be used to estimate the required non-radiative heating in the different regions.

  16. Calculated resonance line profiles of [Mg II], [C II], and [Si IV] in the solar atmosphere

    International Nuclear Information System (INIS)

    Avrett, E.; McKillop, S.; Landi, E.

    2013-01-01

    NASA's Interface Region Imaging Spectrograph space mission, launched 2013 June 27, is intended to study the structure of the solar chromosphere and the transition region between the chromosphere and corona. The spectral lines to be observed include the Mg II k line at 2796.5 Å, the C II 1334.5 Å line, and the Si IV line at 1393.8 Å, which are formed in the middle chromosphere, the upper chromosphere, and the lower transition region, respectively. Here we calculate the profiles of these lines from four models of the solar atmosphere, intended to represent the faint and mean internetwork, a network lane, and bright network. We show how the profiles change from the center of the solar disk toward the limb of the Sun and in response to outflows and inflows. These results are intended to cover the range of expected quiet-Sun observations and assist in their interpretation. We expect that the observations will lead to improvements in the models, which can then be used to estimate the required non-radiative heating in the different regions.

  17. Assembly line performance and modeling

    Science.gov (United States)

    Rane, Arun B.; Sunnapwar, Vivek K.

    2017-09-01

    Automobile sector forms the backbone of manufacturing sector. Vehicle assembly line is important section in automobile plant where repetitive tasks are performed one after another at different workstations. In this thesis, a methodology is proposed to reduce cycle time and time loss due to important factors like equipment failure, shortage of inventory, absenteeism, set-up, material handling, rejection and fatigue to improve output within given cost constraints. Various relationships between these factors, corresponding cost and output are established by scientific approach. This methodology is validated in three different vehicle assembly plants. Proposed methodology may help practitioners to optimize the assembly line using lean techniques.

  18. Modeling of Heat Transfer in LDConverter (BOF) Lining

    OpenAIRE

    Jahan, Georgina

    2012-01-01

    During the production of steel in the LD converter the refractory lining is exposed to high temperature emulsion of steel, slag and gas. It protects the steel body of the vessel to come in contact with the molten steel.The main purpose of this work was to observe the temperature distribution profile in converter refractory lining which is very important to understand the life of the refractory lining of the LD converter.In this study, a three dimensional (3D) heat transfer model for the refra...

  19. Computer Profiling Based Model for Investigation

    OpenAIRE

    Neeraj Choudhary; Nikhil Kumar Singh; Parmalik Singh

    2011-01-01

    Computer profiling is used for computer forensic analysis, and proposes and elaborates on a novel model for use in computer profiling, the computer profiling object model. The computer profiling object model is an information model which models a computer as objects with various attributes and inter-relationships. These together provide the information necessary for a human investigator or an automated reasoning engine to make judgments as to the probable usage and evidentiary value of a comp...

  20. Profiles of the Hα line by means of the analogical television system

    International Nuclear Information System (INIS)

    Andrillat, Y.; Fehrenbach, Ch.

    1981-01-01

    High resolution profiles of the Hα line are derived for about thirty Be stars and several bright stars by means of the analogical television system. The profiles obtained with this method fairly agree with the theoretical ones (α Lyrae). (Auth.)

  1. Fluid-line math model

    Science.gov (United States)

    Kandelman, A.; Nelson, D. J.

    1977-01-01

    Simplified mathematical model simulates large hydraulic systems on either analog or digital computers. Models of pumps, servoactuators, reservoirs, accumulators, and valves are connected generating systems containing six hundred elements.

  2. Mathematical model of subscriber extension line

    OpenAIRE

    Petříková, Iva; Diviš, Zdeněk; Tesař, Zdeněk

    2012-01-01

    The paper focuses on measurement properties of metallic subscriber extension lines to build regression mathematical model for a symmetric pair cable. The regression model is compared with an analytical model based on a theoretical description of transfer parameters for this type of line. The output of the paper should demonstrate the impact of electromagnetic interference on the symmetric pair. The paper also describes the method to identify the interference sources and ...

  3. Effect of a progressive sound wave on the profiles of spectral lines. 2: Asymmetry of faint Fraunhofer lines. [absorption spectra

    Science.gov (United States)

    Kostyk, R. I.

    1974-01-01

    The absorption coefficient profile was calculated for lines of different chemical elements in a medium with progressive sound waves. Calculations show that (1) the degree and direction of asymmetry depend on the atomic ionization potential and the potential of lower level excitation of the individual line; (2) the degree of asymmetry of a line decreases from the center toward the limb of the solar disc; and (3) turbulent motions 'suppress' the asymmetry.

  4. Solar line Lsub(α) profile and an interstellar wind dynamics

    International Nuclear Information System (INIS)

    Burgin, M.S.

    1978-01-01

    Analytical theory of interstellar hydrogen atom motion into the region of solar Lsub(α)-radiation is given. Hydrogen distribution in the Solar system is calculated with an account of the Lsub(α) solar line profile difference from a flat one. The effect of the profile form on the scattered radiation intensity is estimated. Calculation errors of the scattered radiation intensity, connected with the difference between a line profile and a flat one, do not exceed 5% for the real Lsub(α) solar line profile

  5. Ion temperature profile measurements using the far line wings of Hα

    International Nuclear Information System (INIS)

    Bengtson, R.D.; Boedo, J.; Rowan, W.L.

    1986-01-01

    This paper presents ion temperature profiles for the outer half of the TEXT plasma using the Doppler broadened far line wings of the H α line profile. The technique depends on the assumption that the hydrogen neutrals have equilibrated with the ions through charge exchange collisions. Data reduction depends upon going far enough out on the line wing that the intensity profile is characteristic of the hottest portion of the plasma along the line of sight, thus removing the need for an inversion procedure. A Fabry-Perot interferometer is used to measure the line profiles because of its superior instrumental profile. This technique is compared with the charge exchange technique and Doppler broadening of impurities. The application to ion temperature measurements using a diagnostic neutral beam is also discussed

  6. Prescribed wind shear modelling with the actuator line technique

    DEFF Research Database (Denmark)

    Mikkelsen, Robert Flemming; Sørensen, Jens Nørkær; Troldborg, Niels

    2007-01-01

    A method for prescribing arbitrary steady atmospheric wind shear profiles combined with CFD is presented. The method is furthermore combined with the actuator line technique governing the aerodynamic loads on a wind turbine. Computation are carried out on a wind turbine exposed to a representative...... steady atmospheric wind shear profile with and without wind direction changes up through the atmospheric boundary layer. Results show that the main impact on the turbine is captured by the model. Analysis of the wake behind the wind turbine, reveal the formation of a skewed wake geometry interacting...

  7. High-resolution spectroscopy for Cepheids distance determination. IV. Time series of Hα line profiles

    Science.gov (United States)

    Nardetto, N.; Groh, J. H.; Kraus, S.; Millour, F.; Gillet, D.

    2008-10-01

    Context: In recent years, infrared interferometry has revealed the presence of faint dusty circumstellar envelopes (CSE) around Cepheids. However the size, shape, chemical nature, and the interaction of the CSE with the star itself are still under investigation. The presence of a CSE might have an effect on the angular diameter estimates used in the interferometric Baade-Wesselink and surface-brightness methods of determining the distance of Cepheids. Aims: By studying Hα profiles as a function of the period, we investigate the permanent mass loss and the CSE around Cepheids. Our high spectral- and time-resolution data, combined with a very good S/N, will be useful in constraining future hydrodynamical models of Cepheids atmosphere and their close environment. Methods: We present HARPS (High Accuracy Radial velocity Planetary Search project developed by the European Southern Observatory.) high-resolution spectroscopy (R = 120 000) of eight galactic Cepheids: R Tra, S Cru, Y Sgr, β Dor, zeta Gem, RZ Vel, ell Car, and RS Pup, providing a good period sampling (P = 3.39 d to P = 41.52 d). The Hα line profiles are described for all stars using a 2D (wavelength versus pulsation phase) representation. For each star, an average spectral line profile is derived, together with its first moment (γ-velocity) and its asymmetry (γ-asymmetry). Results: Short-period Cepheids show Hα line profiles following the pulsating envelope of the star, while long-period Cepheids show very complex line profiles and, in particular, large asymmetries. We find a new relationship between the period of Cepheids and their γ-velocities and -asymmetries. These results may be related to the dynamical structure of the atmosphere and to a permanent mass loss of Cepheids. In particular, we confirm for ell Car a dominant absorption component whose velocity is constant and nearly of zero km s-1 in the stellar rest frame. This component is attributed to the presence of circumstellar envelope

  8. Metabolite Depletion Affects Flux Profiling of Cell Lines

    DEFF Research Database (Denmark)

    Nilsson, A.; Haanstra, J. R.; Teusink, B.

    2018-01-01

    Quantifying the rate of consumption and release of metabolites (i.e., flux profiling) has become integral to the study of cancer. The fluxes as well as the growth of the cells may be affected by metabolite depletion during cultivation.......Quantifying the rate of consumption and release of metabolites (i.e., flux profiling) has become integral to the study of cancer. The fluxes as well as the growth of the cells may be affected by metabolite depletion during cultivation....

  9. Applications of the Warren-Averbach method of X-ray diffraction line profile analysis

    International Nuclear Information System (INIS)

    Ichikawa, Rodrigo Uchida

    2013-01-01

    The objective of this work was to develop and implement a methodology of X-ray Line Profile Analysis (XLPA) for the study and determination of the mean crystallite sizes and microstrains in materials. A computer program was developed to speed up the treatment of diffraction peaks and perform the deconvolution utilizing the Stokes method to correct the instrumental contribution in the X-ray diffraction measurements. The XLPA methods used were the Scherrer, Williamson-Hall and Single-Line methods, which can be called real space methods, and the Fourier space method of Warren-Averbach. Furthermore, considering a mathematical modelling it was possible to calculate the crystallite size distribution, considering the log-normal distribution and spherical crystallites. It was possible to demonstrate the proposed theory can provide reliable results evaluating a dispersion parameter. The methodologies described above were applied in two distinct materials: in the alloy Zircaloy-4 and in ZnO. (author)

  10. Model to Design Drip Hose Lateral Line

    Science.gov (United States)

    Ludwig, Rafael; Cury Saad, João Carlos

    2014-05-01

    Introduction The design criterion for non-pressure compensating drip hose is normally to have 10% of flow variation (Δq) in the lateral line, corresponding to 20% of head pressure variation (ΔH). Longer lateral lines in drip irrigation systems using conventional drippers provide cost reduction, but it is necessary to obtain to the uniformity of irrigation [1]. The use of Δq higher levels can provide longer lateral lines. [4] proposes the use of a 30% Δq and he found that this value resulted in distribution uniformity over 80%. [1] considered it is possible to extend the lateral line length using two emitters spacing in different section. He assumed that the spacing changing point would be at 40% of the total length, because this is approximately the location of the average flow according with [2]. [3] found that, for practical purposes, the average pressure is located at 40% of the length of the lateral line and that until this point it has already consumed 75% of total pressure head loss (hf ). In this case, the challenge for designers is getting longer lateral lines with high values of uniformity. Objective The objective of this study was to develop a model to design longer lateral lines using non-pressure compensating drip hose. Using the developed model, the hypotheses to be evaluated were: a) the use of two different spacing between emitters in the same lateral line allows longer length; b) it is possible to get longer lateral lines using high values of pressure variation in the lateral lines since the distribution uniformity stays below allowable limits. Methodology A computer program was developed in Delphi® based on the model developed and it is able to design lateral lines in level using non-pressure compensating drip hose. The input data are: desired distribution uniformity (DU); initial and final pressure in the lateral line; coefficients of relationship between emitter discharge and pressure head; hose internal diameter; pipe cross-sectional area

  11. The morphologies of breast cancer cell lines in three-dimensionalassays correlate with their profiles of gene expression

    Energy Technology Data Exchange (ETDEWEB)

    Kenny, Paraic A.; Lee, Genee Y.; Myers, Connie A.; Neve, RichardM.; Semeiks, Jeremy R.; Spellman, Paul T.; Lorenz, Katrin; Lee, Eva H.; Barcellos-Hoff, Mary Helen; Petersen, Ole W.; Gray, Joe W.; Bissell, MinaJ.

    2007-01-31

    3D cell cultures are rapidly becoming the method of choice for the physiologically relevant modeling of many aspects of non-malignant and malignant cell behavior ex vivo. Nevertheless, only a limited number of distinct cell types have been evaluated in this assay to date. Here we report the first large scale comparison of the transcriptional profiles and 3D cell culture phenotypes of a substantial panel of human breast cancer cell lines. Each cell line adopts a colony morphology of one of four main classes in 3D culture. These morphologies reflect, at least in part, the underlying gene expression profile and protein expression patterns of the cell lines, and distinct morphologies were also associated with tumor cell invasiveness and with cell lines originating from metastases. We further demonstrate that consistent differences in genes encoding signal transduction proteins emerge when even tumor cells are cultured in 3D microenvironments.

  12. XRAYL: a program for producing idealized powder diffraction line profiles from overlapped powder patterns

    Energy Technology Data Exchange (ETDEWEB)

    Hubbard, C.R.; Morosin, B. [Sandia National Labs., Albuquerque, NM (United States); Stewart, J.M. [Maryland Univ., College Park, MD (United States)

    1996-09-01

    The X-ray diffraction patterns of samples of polycrystalline materials are used to identify and characterize phases. Very often the total (or composite) profile consists of a series of overlapping profiles. In many applications it is necessary to separate the component profiles from the total profile. (In this document the terms {ital profile, line}, and {ital peak} are used interchangeably to represent these features of X-ray or neutron diffraction patterns.) A computer program, XRAYL, first developed in the 1980s and subsequently enlarged and improved, allows the fitting of analytical functions to powder diffraction lines. The fitting process produces parameters of chosen profile functions, diffraction line by diffraction line. The resulting function parameters may then be used to generate ``idealized`` powder diffraction lines as counts at steps in 2{Omega}. The generated lines are effectively free of statistical noise and contributions from overlapping lines. Each separated line extends to background on both sides of the generated profile. XRAYL may, therefore, be used in X-ray powder diffraction profile analysis as a preprocessor program that is, separating peaks and feeding the ``resolved`` data to subsequent analysis programs. This self- contained document includes: (1) a description of the fitting functions coded into XRAYL, (2) an outline of the least-squares algorithm used in fitting the profile function, (3) the file formats and contents utilized by the computer code, (4) the user options and their presentation requirements for execution of the program, (5) an example of input and output for a test case, and (6) source code listings on a diskette.

  13. A dynamical model for the narrow line region of Seyfert galaxies

    International Nuclear Information System (INIS)

    Mobasher, B.; Raine, D.J.

    1987-01-01

    Detailed emission line ratios and profiles have been computed for the 'catapult' model of the NLR. According to this model the emission lines arise from interstellar clouds interacting with a wind from the central source. For clouds which are ejected by the ram pressure of the wind agreement is found with average Seyfert 2 line ratios for the main diagnostic lines, within the 2σ dispersions. This also gives the observed constancy of line profiles for different lines. The Seyfert 1 line ratios are obtained by adding a component of clouds which are not ejected. The predicted line ratios (relative to [O III]λ5007) for Seyfert 1s agree to better than 1σ with the observed averages. (author)

  14. MGN V RSS LINE OF SIGHT ACCELERATION PROFILES V1.0

    Data.gov (United States)

    National Aeronautics and Space Administration — Line of Sight Acceleration Profile Data Records (LOSAPDR) consist of data from Doppler tracking of the orbiting spacecraft. The relative motion of the spacecraft and...

  15. LP L RSS LINE OF SIGHT ACCELERATION PROFILES V1.0

    Data.gov (United States)

    National Aeronautics and Space Administration — Line of Sight Acceleration Profile Data Records (LOSAPDR) consist of data from Doppler tracking of the orbiting spacecraft. The relative motion of the spacecraft and...

  16. Statistical Model Checking for Product Lines

    DEFF Research Database (Denmark)

    ter Beek, Maurice H.; Legay, Axel; Lluch Lafuente, Alberto

    2016-01-01

    We report on the suitability of statistical model checking for the analysis of quantitative properties of product line models by an extended treatment of earlier work by the authors. The type of analysis that can be performed includes the likelihood of specific product behaviour, the expected...... average cost of products (in terms of the attributes of the products’ features) and the probability of features to be (un)installed at runtime. The product lines must be modelled in QFLan, which extends the probabilistic feature-oriented language PFLan with novel quantitative constraints among features...... behaviour converge in a discrete-time Markov chain semantics, enabling the analysis of quantitative properties. Technically, a Maude implementation of QFLan, integrated with Microsoft’s SMT constraint solver Z3, is combined with the distributed statistical model checker MultiVeStA, developed by one...

  17. Internet Teaching By Style: Profiling the On-line Professor

    Directory of Open Access Journals (Sweden)

    Sharon Strand

    2000-01-01

    Full Text Available The goal of this article is to offer the results of a pilot study which examined the personality type and teaching style preferences of faculty who elected to teach an on-line course. The article will present a description of personality assessments, including the Myers-Briggs Type Indicator (MBTI and Anthony Gregorc's Transaction Ability Inventory used to determine teaching tendencies and styles. In addition, a structured written questionnaire developed by the researchers was used to assess teacher satisfaction with worldwide web-based instruction. Utilizing the results of these psychological assessments, a preliminary analysis of the personal characteristics of college professors who chose to teach on line will be presented. This pilot study found that some preferred teaching styles may be more compatible with the dynamics of distance learning formats. By determining successful teaching styles for on-line courses, we can develop more effective faculty development programs to assist others in successfully transitioning into the cyber-teaching and learning environment.

  18. Modeling Field Line Resonances in the Inner Plasmasphere with the Field Line Interhemispheric Plasma Model

    Science.gov (United States)

    McCarthy, N. M.; Jorgensen, A. M.; Stone, W. D.; Zesta, E.

    2010-12-01

    Equatorial plasma mass density in the Inner Magnetosphere of the Earth has been traditionally derived from measurements of Field Line Resonances from pairs of ground magnetometers closely spaced in latitude. The full plasma mass density along the flux tube can be determined using such measurements in an inversion of the Field Line Resonance Equation. Cummings et al [1969] developed the Field Line Resonance equation and numerically solved for the Field Line Resonances by assuming a power law distribution that varied with the geocentric distance from the equatorial crossing point of the field lines and a dipole model for the Earth's magnetic field. So far all numerical solutions of the Field Line Resonance Equation use some form of a power law distribution of the mass density along the field line, that depends on the magnetic field model, typically assumed to be a dipole, with only one recent work exploring deviations from a dipole magnetic field. Another fundamental assumption in the solution of the Field Line Resonance Equation is that of perfectly conducting, flat ionospheres as the two boundaries of the field line. While this assumption is considered valid for L values greater than 2, recent works have found it to be invalid for L values of 3 or less. In the present paper we solve the Field Line Resonance Equation for L values less than 3.5 using a three dimensional ionosphere, and without assuming a power law for the mass density distribution along the field line. Instead we use plasma mass density data from the Field Line Interhemispheric Plasma (FLIP) model to numerically solve the Field Line Resonance Equation for the eigenfrequencies. We also examine how the resonance frequencies vary as a function of the driving parameters. Finally we examine two events in which we compare the derived frequencies with measurements from the SAMBA magnetometer array.

  19. Microbial Community Profile of a Lead Service Line Removed from a Drinking Water Distribution System▿

    Science.gov (United States)

    White, Colin; Tancos, Matthew; Lytle, Darren A.

    2011-01-01

    A corroded lead service line was removed from a drinking water distribution system, and the microbial community was profiled using 16S rRNA gene techniques. This is the first report of the characterization of a biofilm on the surface of a corroded lead drinking water service line. The majority of phylotypes have been linked to heavy-metal-contaminated environments. PMID:21652741

  20. Radiation Changes the Metabolic Profiling of Melanoma Cell Line B16.

    Directory of Open Access Journals (Sweden)

    Lige Wu

    Full Text Available Radiation therapy can be an effective way to kill cancer cells using ionizing radiation, but some tumors are resistant to radiation therapy and the underlying mechanism still remains elusive. It is therefore necessary to establish an appropriate working model to study and monitor radiation-mediated cancer therapy. In response to cellular stress, the metabolome is the integrated profiling of changes in all metabolites in cells, which can be used to investigate radiation tolerance mechanisms and identify targets for cancer radiation sensibilization. In this study, using 1H nuclear magnetic resonance for untargeted metabolic profiling in radiation-tolerant mouse melanoma cell line B16, we comprehensively investigated changes in metabolites and metabolic network in B16 cells in response to radiation. Principal component analysis and partial least squares discriminant analysis indicated the difference in cellular metabolites between the untreated cells and X-ray radiated cells. In radiated cells, the content of alanine, glutamate, glycine and choline was increased, while the content of leucine, lactate, creatine and creatine phosphate was decreased. Enrichment analysis of metabolic pathway showed that the changes in metabolites were related to multiple metabolic pathways including the metabolism of glycine, arginine, taurine, glycolysis, and gluconeogenesis. Taken together, with cellular metabolome study followed by bioinformatic analysis to profile specific metabolic pathways in response to radiation, we deepened our understanding of radiation-resistant mechanisms and radiation sensibilization in cancer, which may further provide a theoretical and practical basis for personalized cancer therapy.

  1. A CpG island hypermethylation profile of primary colorectal carcinomas and colon cancer cell lines

    Directory of Open Access Journals (Sweden)

    Rognum Torleiv O

    2004-10-01

    Full Text Available Abstract Background Tumor cell lines are commonly used as experimental tools in cancer research, but their relevance for the in vivo situation is debated. In a series of 11 microsatellite stable (MSS and 9 microsatellite unstable (MSI colon cancer cell lines and primary colon carcinomas (25 MSS and 28 MSI with known ploidy stem line and APC, KRAS, and TP53 mutation status, we analyzed the promoter methylation of the following genes: hMLH1, MGMT, p16INK4a (CDKN2A α-transcript, p14ARF (CDKN2A β-transcript, APC, and E-cadherin (CDH1. We compared the DNA methylation profiles of the cell lines with those of the primary tumors. Finally, we examined if the epigenetic changes were associated with known genetic markers and/or clinicopathological variables. Results The cell lines and primary tumors generally showed similar overall distribution and frequencies of gene methylation. Among the cell lines, 15%, 50%, 75%, 65%, 20% and 15% showed promoter methylation for hMLH1, MGMT, p16INK4a, p14ARF, APC, and E-cadherin, respectively, whereas 21%, 40%, 32%, 38%, 32%, and 40% of the primary tumors were methylated for the same genes. hMLH1 and p14ARF were significantly more often methylated in MSI than in MSS primary tumors, whereas the remaining four genes showed similar methylation frequencies in the two groups. Methylation of p14ARF, which indirectly inactivates TP53, was seen more frequently in tumors with normal TP53 than in mutated samples, but the difference was not statistically significant. Methylation of p14ARF and p16INK4a was often present in the same primary tumors, but association to diploidy, MSI, right-sided location and female gender was only significant for p14ARF. E-cadherin was methylated in 14/34 tumors with altered APC further stimulating WNT signaling. Conclusions The present study shows that colon cancer cell lines are in general relevant in vitro models, comparable with the in vivo situation, as the cell lines display many of the same

  2. The influence of hyperfine structure on some manganese line profiles in the solar spectrum

    Science.gov (United States)

    Vitas, N.; Vince, I.

    Taking into account effects of hyperfine structure, we calculated the synthetic solar spectrum for wavelength intervals around nine neutral manganese lines. To estimate values of hyperfine components we used the Oxford total absorption oscillator strength measurements (Booth et al. 1983). We compared observed profiles (Photometric Atlas of the Solar Spectrum from 300 to 1000 nm (Delbouille et al. 1973)) of selected manganese lines with synthesized profiles in two cases: when hyperfine structure is not and when it is taken into account. By comparing the calculated with observed spectrum, we corrected the total oscillator strengths of all nine selected manganese lines.

  3. Potential and electric field profiles for transmission line insulators

    Energy Technology Data Exchange (ETDEWEB)

    Reddy, S.B.; Kumar, U. [Indian Inst. of Science, Bangalore (India). Dept. of Electrical Engineering, High Voltage Laboratory

    2008-07-01

    Overhead transmission lines are used to transmit bulk power at high voltages over very long distances. The objective of this study was to deduce accurate quantitative data on electrical stress distribution on 6 commonly used porcelain insulator strings. Both single disc and 15 disc strings corresponding to 220 kV line were considered. Both volume and surface electrical stresses along the porcelain-to-air and cement-to-air interfaces were deduced. The prevailing stress during laboratory pollution tests was also evaluated. A quantitative comparison of the stresses across commonly used insulators was also carried out. A numerical approach was used since the use of analytical methods for the required field solution was impractical because the geometry does not fit into any of the orthogonal curvilinear coordinates. In this study, the governing field was electrostatic under clean conditions and steady conduction under polluted conditions. Therefore the governing field equation was Laplacian, with complex permittivity for combined fields. 12 refs., 2 tabs., 13 figs.

  4. Beam profile monitor system for the bevalac transfer line

    International Nuclear Information System (INIS)

    Stover, G.

    1985-01-01

    Incorporated in the current Bevalac transfer line upgrade project is a proposal for a new electronic beam monitoring system. It will be designed to amplify, convert, and transmit the signals of twelve 16 by 16 multi-wire grids to a central computer located in the Bevatron control room. Each station will contain interface amplifiers and a local microprocessor to convert wire grid currents into digitized values which will then be transmitted via a serial data channel to the main computer. The system will have a large dynamic range (1 nano to 1 milli-ampere of beam current), be designed for distributed operation, and will be easily expandable. This paper describes the basic electronic hardware and software components of the proposed system

  5. Retransformation bias in a stem profile model

    Science.gov (United States)

    Raymond L. Czaplewski; David Bruce

    1990-01-01

    An unbiased profile model, fit to diameter divided by diameter at breast height, overestimated volume of 5.3-m log sections by 0.5 to 3.5%. Another unbiased profile model, fit to squared diameter divided by squared diameter at breast height, underestimated bole diameters by 0.2 to 2.1%. These biases are caused by retransformation of the predicted dependent variable;...

  6. The effect of an homogeneous magnetic field on the line profiles of hydrogen

    International Nuclear Information System (INIS)

    Nguyen, H.; Herman, L.; Drawin, H.W.

    1966-01-01

    The profiles of the hydrogen lines have been calculated taking into account the intermolecular electric field, the electronic collisions, and an external homogeneous magnetic field in which the plasma is imbedded. We considered electron densities N within the range 10 15 ≤ N ≤ 10 18 cm -3 and magnetic field strengths 5 gauss. These values cover practically most of the experimental conditions in which one is interested in the present state of research. In the present paper we only present the numerical results for the lines Ly-α, Ly-β and H-α. For very small magnetic fields our calculated line profiles coincide with the pure Stark profiles recently calculated by GRIEM, KOLB and SHEN (1960). With increasing magnetic fields, important deviations appear. The essential parameters for these deviations are, firstly: the direction of observation with regard to the direction of the magnetic field, and secondly: the ratio between the Zeeman splitting in a magnetic field only and the Stark splitting due to the mean intermolecular electric field. Experimental line profiles have been obtained using a linear discharge tube surrounded by an induction coil, the comparison of tie theoretical profiles with the experimental ones shows a satisfying agreement. The results for the lines originating from higher principal quantum numbers are actually exploited and will be communicated soon. (author) [fr

  7. Identifying anti-growth factors for human cancer cell lines through genome-scale metabolic modeling

    DEFF Research Database (Denmark)

    Ghaffari, Pouyan; Mardinoglu, Adil; Asplund, Anna

    2015-01-01

    Human cancer cell lines are used as important model systems to study molecular mechanisms associated with tumor growth, hereunder how genomic and biological heterogeneity found in primary tumors affect cellular phenotypes. We reconstructed Genome scale metabolic models (GEMs) for eleven cell lines...... based on RNA-Seq data and validated the functionality of these models with data from metabolite profiling. We used cell line-specific GEMs to analyze the differences in the metabolism of cancer cell lines, and to explore the heterogeneous expression of the metabolic subsystems. Furthermore, we predicted...... for inhibition of cell growth may provide leads for the development of efficient cancer treatment strategies....

  8. A SEMI-ANALYTICAL LINE TRANSFER MODEL TO INTERPRET THE SPECTRA OF GALAXY OUTFLOWS

    International Nuclear Information System (INIS)

    Scarlata, C.; Panagia, N.

    2015-01-01

    We present a semi-analytical line transfer model, (SALT), to study the absorption and re-emission line profiles from expanding galactic envelopes. The envelopes are described as a superposition of shells with density and velocity varying with the distance from the center. We adopt the Sobolev approximation to describe the interaction between the photons escaping from each shell and the remainder of the envelope. We include the effect of multiple scatterings within each shell, properly accounting for the atomic structure of the scattering ions. We also account for the effect of a finite circular aperture on actual observations. For equal geometries and density distributions, our models reproduce the main features of the profiles generated with more complicated transfer codes. Also, our SALT line profiles nicely reproduce the typical asymmetric resonant absorption line profiles observed in starforming/starburst galaxies whereas these absorption profiles cannot be reproduced with thin shells moving at a fixed outflow velocity. We show that scattered resonant emission fills in the resonant absorption profiles, with a strength that is different for each transition. Observationally, the effect of resonant filling depends on both the outflow geometry and the size of the outflow relative to the spectroscopic aperture. Neglecting these effects will lead to incorrect values of gas covering fraction and column density. When a fluorescent channel is available, the resonant profiles alone cannot be used to infer the presence of scattered re-emission. Conversely, the presence of emission lines of fluorescent transitions reveals that emission filling cannot be neglected

  9. Statistical modelling of transcript profiles of differentially regulated genes

    Directory of Open Access Journals (Sweden)

    Sergeant Martin J

    2008-07-01

    Full Text Available Abstract Background The vast quantities of gene expression profiling data produced in microarray studies, and the more precise quantitative PCR, are often not statistically analysed to their full potential. Previous studies have summarised gene expression profiles using simple descriptive statistics, basic analysis of variance (ANOVA and the clustering of genes based on simple models fitted to their expression profiles over time. We report the novel application of statistical non-linear regression modelling techniques to describe the shapes of expression profiles for the fungus Agaricus bisporus, quantified by PCR, and for E. coli and Rattus norvegicus, using microarray technology. The use of parametric non-linear regression models provides a more precise description of expression profiles, reducing the "noise" of the raw data to produce a clear "signal" given by the fitted curve, and describing each profile with a small number of biologically interpretable parameters. This approach then allows the direct comparison and clustering of the shapes of response patterns between genes and potentially enables a greater exploration and interpretation of the biological processes driving gene expression. Results Quantitative reverse transcriptase PCR-derived time-course data of genes were modelled. "Split-line" or "broken-stick" regression identified the initial time of gene up-regulation, enabling the classification of genes into those with primary and secondary responses. Five-day profiles were modelled using the biologically-oriented, critical exponential curve, y(t = A + (B + CtRt + ε. This non-linear regression approach allowed the expression patterns for different genes to be compared in terms of curve shape, time of maximal transcript level and the decline and asymptotic response levels. Three distinct regulatory patterns were identified for the five genes studied. Applying the regression modelling approach to microarray-derived time course data

  10. Modeling of Electromagnetic Wave Propagation with Tapered Transmission Line

    Science.gov (United States)

    Lee, Kun-A.; Ko, Kwang-Cheol

    2012-09-01

    Tapered transmission line was used for impedance matching, for high voltage pulse, and atmospheric medium is applied to characteristic equation of tapered transmission line and reflection coefficient so that nonlinear load and circuit modeling of atmospheric medium was simulated by electromagnetic transient program (EMTP). A characteristic of atmospheric medium and Time delay are decided by inductance and capacitance of tapered transmission line. For electromagnetic wave propagation modeling, in this paper, tapered transmission line is implemented. It is difficult to model tapered transmission line directly. Other transmission line that can be expressed by the circuit is used. So object of this paper is efficient modeling of tapered transmission line.

  11. Comparisons between direct and inverse approaches in problems of recovering the true profile of a spectral line

    CERN Document Server

    Mijovic, S

    2003-01-01

    Computer-supported techniques are introduced in the evaluation of experimental data and obtaining the real profile of spectral lines. The direct and inverse approaches were used. The MINUIT program from the packets of CERN's library was used to solve direct problems. Tikhonov's regularization method was also applied to solve the same problems in an inverse manner. Model functions were introduced to check the applicability limitation of these methods and make a comparison between them as well. The advantages and disadvantages of these approaches were shown. The procedures were applied to the measured profiles of He II's spectral lines in a pulsed low-pressure arc. The chosen lines are He II Paschen-alpha (468.6 nm) in the visible region and Balmer-beta (121.5 nm) in the VUV spectral region. The range of experimental errors was determined where both approaches have given reliable results. It was found that we can obtain the real profile of He II 468.6 nm and He II 121.5 nm spectral lines, using the regularizati...

  12. Multiobjective Fuzzy Mixed Assembly Line Sequencing Optimization Model

    OpenAIRE

    Tahriri, Farzad; Zawiah Md Dawal, Siti; Taha, Zahari

    2014-01-01

    It can be deduced from previous studies that there exists a research gap in assembly line sequencing optimization model for mixed-model production lines. In particular, there is a lack of studies which focus on the integration between job shop and assembly lines using fuzzy techniques. Hence, this paper is aimed at addressing the multiobjective mixed-model assembly line sequencing problem by integrating job shop and assembly production lines for factories with modular layouts. The primary go...

  13. Observations of far-infrared line profiles in the Orion-KL region

    International Nuclear Information System (INIS)

    Crawford, M.K.; Lugten, J.B.; Fitelson, W.; Genzel, R.; Melnick, G.; Harvard-Smithsonian Center for Astrophysics, Cambridge, MA)

    1986-01-01

    Measurements of several far-infrared emission line profiles in the Orion-KL region are reported. The emission from the CO, OH, and forbidden O I emission lines toward the BN-KL and H2 peak 1 positions probably comes from dense, hot molecular gas in the Orion-KL shock. The CO and forbidden O I lines have similar profiles, suggesting that the high-velocity forbidden O I emission also arises in magnetohydrodynamic cloud shocks. The velocity centroids of the lines are somewhat blueshifted. The far-infrared data thus support the interpretation that the blue asymmetry of the H2 2 micron lines is not mainly due to differential dust extinction, but rather to the kinematics and geometry of the shocked gas in the Orion-KL outflow. The forbidden O I and CO lines, however, have significantly less extreme blueshifted emission than the H2 lines. Both the forbidden O I 63 micron and forbidden C II 158 micron lines have features strongly supporting a common origin near the surface of the Orion molecular cloud. 28 references

  14. Modeling detector response for neutron depth profiling

    Energy Technology Data Exchange (ETDEWEB)

    Coakley, K.J. [National Inst. of Standards and Technology, Boulder, CO (United States); Downing, R.G. [National Inst. of Standards and Technology, Gaithersburg, MD (United States); Lamaze, G.P. [National Inst. of Standards and Technology, Gaithersburg, MD (United States); Hofsaess, H.C. [Konstanz Univ. (Germany); Biegel, J. [Konstanz Univ. (Germany); Ronning, C. [Konstanz Univ. (Germany)

    1995-11-21

    In Neutron Depth Profiling (NDP), inferences about the concentration profile of an element in a material are based on the energy spectrum of charged particles emitted due to specific nuclear reactions. The detector response function relates the depth of emission to the expected energy spectrum of the emitted particles. Here, the detector response function is modeled for arbitrary source and detector geometries based on a model for the stopping power of the material, energy straggling, multiple scattering and random detector measurement error. At the NIST Cold Neutron Research Facility, a NDP spectrum was collected for a diamond-like carbon (DLC) sample doped with boron. A vertical slit was placed in front of the detector for collimation. Based on the computed detector response function, a model for the depth profile of boron is fit to the observed NDP spectrum. The contribution of straggling to overall variability was increased by multiplying the Bohr Model prediction by a ramp factor. The adjustable parameter in the ramp was selected to give the best agreement between the fitted profile and the expected shape of the profile. The expected shape is determined from experimental process control measurements. (orig.).

  15. The Structured Intuitive Model for Product Line Economics (SIMPLE)

    National Research Council Canada - National Science Library

    Clements, Paul C; McGregor, John D; Cohen, Sholom G

    2005-01-01

    .... This report presents the Structured Intuitive Model of Product Line Economics (SIMPLE), a general-purpose business model that supports the estimation of the costs and benefits in a product line development organization...

  16. Gene expression profile of colon cancer cell lines treated with SN-38

    DEFF Research Database (Denmark)

    Wallin, A; Francis, P; Nilbert, M

    2010-01-01

    the incidence in fact has increased. To improve chemotherapy and enable personalised treatment, the need of biomarkers is of great significance. In this study, we evaluated the gene expression profiles of the colon cancer cell lines treated with SN-38, the active metabolite of topoisomerase-1 inhibitor...

  17. Temporal Variation of Ca–K Line Profile of the Sun during the Solar ...

    Indian Academy of Sciences (India)

    2016-01-27

    Jan 27, 2016 ... We obtained the Ca–K line profile of the Sun as a star since 1969 at the Kodaikanal Observatory (KO) and analysis of the data showed the need to delineate the role of different chromospheric features to the variations of solar irradiance. We, therefore, initiated a new methodology to make observations of ...

  18. Protein profile of human hepatocarcinoma cell line SMMC-7721: Identification and functional analysis

    OpenAIRE

    Feng, Yi; Tian, Zhong-Min; Wan, Ming-Xi; Zheng, Zhao-Bin

    2007-01-01

    AIM: To investigate the protein profile of human hepatocarcinoma cell line SMMC-7721, to analyze the specific functions of abundant expressed proteins in the processes of hepatocarcinoma genesis, growth and metastasis, to identify the hepatocarcinoma-specific biomarkers for the early prediction in diagnosis, and to explore the new drug targets for liver cancer therapy.

  19. Predictive models for moving contact line flows

    Science.gov (United States)

    Rame, Enrique; Garoff, Stephen

    2003-01-01

    Modeling flows with moving contact lines poses the formidable challenge that the usual assumptions of Newtonian fluid and no-slip condition give rise to a well-known singularity. This singularity prevents one from satisfying the contact angle condition to compute the shape of the fluid-fluid interface, a crucial calculation without which design parameters such as the pressure drop needed to move an immiscible 2-fluid system through a solid matrix cannot be evaluated. Some progress has been made for low Capillary number spreading flows. Combining experimental measurements of fluid-fluid interfaces very near the moving contact line with an analytical expression for the interface shape, we can determine a parameter that forms a boundary condition for the macroscopic interface shape when Ca much les than l. This parameter, which plays the role of an "apparent" or macroscopic dynamic contact angle, is shown by the theory to depend on the system geometry through the macroscopic length scale. This theoretically established dependence on geometry allows this parameter to be "transferable" from the geometry of the measurement to any other geometry involving the same material system. Unfortunately this prediction of the theory cannot be tested on Earth.

  20. Estimation of Mass-Loss Rates from Emission Line Profiles in the UV Spectra of Cool Stars

    Science.gov (United States)

    Carpenter, K. G.; Robinson, R. D.; Harper, G. M.

    1999-01-01

    The photon-scattering winds of cool, low-gravity stars (K-M giants and supergiants) produce absorption features in the strong chromospheric emission lines. This provides us with an opportunity to assess important parameters of the wind, including flow and turbulent velocities, the optical depth of the wind above the region of photon creation, and the star's mass-loss rate. We have used the Lamers et al. Sobolev with Exact Integration (SEI) radiative transfer code along with simple models of the outer atmospheric structure to compute synthetic line profiles for comparison with the observed line profiles. The SEI code has the advantage of being computationally fast and allows a great number of possible wind models to be examined. We therefore use it here to obtain initial first-order estimates of the wind parameters. More sophisticated, but more time-consuming and resource intensive calculations will be performed at a later date, using the SEI-deduced wind parameters as a starting point. A comparison of the profiles over a range of wind velocity laws, turbulence values, and line opacities allows us to constrain the wind parameters, and to estimate the mass-loss rates. We have applied this analysis technique (using lines of Mg II, 0 I, and Fe II) so far to four stars: the normal K5-giant alpha Tau, the hybrid K-giant gamma Dra, the K5 supergiant lambda Vel, and the M-giant gamma Cru. We present in this paper a description of the technique, including the assumptions which go into its use, an assessment of its robustness, and the results of our analysis.

  1. Line profiles of hydrogenic ions from high-temperature and high-density plasmas

    International Nuclear Information System (INIS)

    Hou Qing; Li Jianming

    1991-01-01

    Applying the Hooper's first-order theory, the authors calculate the static micro-electric field distributions in plasmas containing various multiply-charged ions. The influences of the impurity concentrations on the micro electric field distributions and on the Lyman profiles (n→1) from hydrogenic ions are analysed. Based on the optical-thin line profiles, the radiation transfer equation in sphere plasmas with various optical depths is solved. The results confirm that the opacity-broadening of the line profiles has almost no effect on the separation of Lyman β splitted peaks. Such separation is determined by electric field at which the static micro-electric field distribution has a maximum. The separation can be utilized for spatially resolved and temporally resolved density diagnostic of fusion plasmas

  2. Tip vortices in the actuator line model

    Science.gov (United States)

    Martinez, Luis; Meneveau, Charles

    2017-11-01

    The actuator line model (ALM) is a widely used tool to represent the wind turbine blades in computational fluid dynamics without the need to resolve the full geometry of the blades. The ALM can be optimized to represent the `correct' aerodynamics of the blades by choosing an appropriate smearing length scale ɛ. This appropriate length scale creates a tip vortex which induces a downwash near the tip of the blade. A theoretical frame-work is used to establish a solution to the induced velocity created by a tip vortex as a function of the smearing length scale ɛ. A correction is presented which allows the use of a non-optimal smearing length scale but still provides the downwash which would be induced using the optimal length scale. Thanks to the National Science Foundation (NSF) who provided financial support for this research via Grants IGERT 0801471, IIA-1243482 (the WINDINSPIRE project) and ECCS-1230788.

  3. DNA methylation profiles of organic anion transporting polypeptide 1B3 in cancer cell lines.

    Science.gov (United States)

    Ichihara, Sayaka; Kikuchi, Ryota; Kusuhara, Hiroyuki; Imai, Satoki; Maeda, Kazuya; Sugiyama, Yuichi

    2010-03-01

    Multispecific organic anion transporter, OATP1B3/SLCO1B3, is expressed in several cancer cell lines as well as tumor tissues, and its expression sensitizes the cells to some anti-cancer agents. The present study was aimed to characterize the DNA methylation profiles around the transcriptional start site (TSS) of OATP1B3 and correlate them with the mRNA expression in cancer and immortalized cell lines. The mRNA expression and DNA methylation profiles of OATP1B3 were determined by RT-PCR and bisulfite sequencing, respectively. The expression of OATP1B3 mRNA was detected in DLD-1, TFK-1, PK-8, and PK-45P cells, but below the limit of detection in HepG2, Caco-2, and HEK293 cells. Bisulfite sequencing demonstrated that CpG dinucleotides around the TSS are differentially methylated among cell lines and partly associated with the mRNA expression profile of OATP1B3. Furthermore, treatment with 5-aza-2'-deoxycytidine, an inhibitor of DNA methyltransferase, significantly increased the mRNA expression of OATP1B3 in HepG2 and Caco-2 cells by 18- and 14-fold, respectively, but not in DLD-1 and TFK-1 cells. DNA methylation-dependent gene silencing is at least partly involved in the regulation of OATP1B3 expression in cancer/immortalized cell lines.

  4. Ultraviolet and Optical Line Profile Variations in the Spectrum of ɛ Persei

    Science.gov (United States)

    Gies, D. R.; Kambe, E.; Josephs, T. S.; Bagnuolo, W. G., Jr.; Choi, Y. J.; Gudehus, D.; Guyton, K. M.; Hartkopf, W. I.; Hildebrand, J. L.; Kaye, A. B.; Mason, B. D.; Riddle, R. L.; Sowers, J. W.; Turner, N. H.; Wilson, J. W.; Xiong, Y.

    1999-11-01

    The rapid variable star, ɛ Per (B0.5 IV-III), displays the largest amplitude profile fluctuations known among the growing number of massive, spectrum-variable stars. Here we present an analysis of a continuous 5 day run of IUE UV spectroscopy, and we show for the first time that the systematic, blue-to-red moving patterns observed in high-quality optical spectra are also present in the UV photospheric lines. We present cross-correlation functions of the individual spectra with that of a narrow-lined standard that produce a high signal-to-noise ratio representation of the blue-to-red moving bump patterns found in individual lines. We then use time series analysis methods to determine the periodic components of the profile variations (after reregistering the spectra to correct for binary motion). There are at least six periods present (ranging from 8.46 to 2.27 hr), and most of these signals are also found in optical line variations observed in 1986 (although the relative amplitudes have changed significantly). Furthermore, analysis of a shorter time series of IUE spectra from 1984 shows that similar periods were present then. We also present Hα and He I λ6678 profiles obtained with the Georgia State University Multi-Telescope Telescope, which were made simultaneously with IUE, and we show that the profile variations are essentially identical in the UV and optical ranges. We rule out rotational modulation and circumstellar gas obscuration as possible causes, and we suggest instead that the variations are the result of photospheric nonradial pulsations of relatively low degree (l=3-5). There were significant changes (~10%) in the equivalent widths of the UV stellar wind lines during the IUE run, and we suggest that wind strengthening events are related to episodes of large-amplitude, constructive interference between the NRP modes. Thus, intermode beating may play an important role in promoting wind loss from massive stars.

  5. Uncertainty of Integrated Intensity Following Line Profile Fitting of Multiline Spectra.

    Science.gov (United States)

    Surmick, David M; Boukari, Hacene; Woodward, Jonathan; Stowe, Ashley C; Melikechi, Noureddine

    2018-01-01

    A novel method of determining the total uncertainty in the integrated intensity of fitted emission lines in multipeaked emission spectra is presented. The proposed method does not require an assumption of the type of line profile to be specified. The absolute difference between a fit and measured spectrum defines the uncertainty of the integrated signal intensity and is subsequently decomposed to determine the uncertainty of each peak in multiline fits. Decomposition relies on tabulating a weighting factor, which describes how each peak contributes to the total integral uncertainty. Applications of this method to quantitative approaches in laser-induced breakdown spectroscopy analysis are described.

  6. Modeling operational behavior of a disassembly line

    Science.gov (United States)

    Kizilkaya, Elif A.; Gupta, Surendra M.

    2004-12-01

    In this paper we present a dynamic kanban (pull) system specifically developed for disassembly lines. This type of kanban system is much more complex than the traditional kanban system used in assembly lines. For instance, unlike the assembly line where the external demand occurs only at the last station, the demands in the disassembly case also occur at any of the intermittent stations. The reason is that as a product moves on the disassembly line, various parts are disassembled at every station and accumulated at that station. Therefore, there are as many demand sources as there are number of parts. We consider a case example involving the end-of-life products. Based on the precedence relationships and other criteria such as hazardous properties of the parts, we balance the disassembly line. The results of the disassembly line-balancing problem (DLBP) are used as input to the proposed dynamic kanban system for disassembly line (DKSDL). We compare the performance of the DKSDL to the modified kanban system for disassembly line (MKSDL), which was previously introduced by the authors. We show, via simulation, that the DKSDL is far superior to MKSDL considered.

  7. Properties of 3-dimensional line location models

    DEFF Research Database (Denmark)

    Brimberg, Jack; Juel, Henrik; Schöbel, Anita

    2002-01-01

    We consider the problem of locating a line with respect to some existing facilities in 3-dimensional space, such that the sum of weighted distances between the line and the facilities is minimized. Measuring distance using the l\\_p norm is discussed, along with the special cases of Euclidean...

  8. Cytostatic resistance profile of the sulfur mustard resistant keratinocyte cell line HaCaT/SM.

    Science.gov (United States)

    Schmidt, Annette; Wolf, Markus; Rothmiller, Simone; Worek, Franz; Steinritz, Dirk; Thiermann, Horst

    2018-03-15

    The cell line HaCaT/SM was developed as a sulfur mustard (SM) resistant cell line from the human keratinocyte cell line HaCaT. This cell line was established to learn more about the effect of SM and possible therapeutic approaches to counteract the cytotoxic effects of SM. The aim of this study was to clarify whether the SM-resistant cell line HaCaT/SM exhibit also resistance to other alkylating agents or cytotoxic drugs with different mechanism of action. The chemosensitivity of SM-resistant human keratinocyte cell line HaCaT/SM and the original cell line HaCaT were tested using the XTT assay. Nine cytotoxic drugs from five different substance groups were investigated. HaCaT/SM showed a significant increase in resistance against all tested drugs. From the substance class of the alkylating agents, HaCaT/SM showed the strongest resistance increase against chlorambucil (1.7 fold increase). Whereas over all substances strongest increase was observed against cisplatin (5.1 fold increase). The highest resistance was observed for cisplatin. The SM resistant cells revealed changes in the miRNA profile as described before. The resistance to cisplatin is also connected to a specific miRNA profile. Interestingly, changes of miRNA-203 and miRNA-21 levels were found in HaCaT/SM as well as in cisplatin resistant cells. It is therefore conceivable that the same resistance pathways are involved for both substances. Copyright © 2018 Elsevier B.V. All rights reserved.

  9. Gene expression profiles of human promyelocytic leukemia cell lines exposed to volatile organic compounds.

    Science.gov (United States)

    Sarma, Sailendra Nath; Kim, Youn-Jung; Ryu, Jae-Chun

    2010-05-27

    Benzene, toluene, o-xylene, ethylbenzene, trichloroethylene and dichloromethane are the most widely used volatile organic compounds (VOCs), and their toxic mechanisms are still undefined. This study analyzed the genome-wide expression profiles of human promyelocytic leukemia HL-60 cells exposed to VOCs using a 35-K whole human genome oligonucleotide microarray to ascertain potential biomarkers. Genes with a significantly increased expression levels (over 1.5-fold and p-values lines to VOC exposure.

  10. Detection method of proximal caries using line profile in digital intra-oral radiography

    International Nuclear Information System (INIS)

    Choi, Yong Suk; Kim, Gyu Tae; Hwang, Eui Hwan; Lee, Min Ja; Choi, Sam Jin; Park, Hun Kuk; Park, Jeong Hoon

    2009-01-01

    The purpose of this study was to investigate how to detect proximal caries using line profile and validate linear measurements of proximal caries lesions by basic digital manipulation of radiographic images. The X-ray images of control group (15) and caries teeth (15) from patients were used. For each image, the line profile at the proximal caries-susceptible zone was calculated. To evaluate the contrast as a function of line profile to detect proximal caries, a difference coefficient (D) that indicates the relative difference between caries and sound dentin or intact enamel was measured. Mean values of D were 0.0354 ± 0.0155 in non-caries and 0.2632 ± 0.0982 in caries (p<0.001). The mean values of caries group were higher than non-caries group and there was correlation between proximal dental caries and D. It is demonstrated that the mean value of D from caries group was higher than that of control group. From the result, values of D possess great potentiality as a new detection parameter for proximal dental caries.

  11. Detection method of proximal caries using line profile in digital intra-oral radiography

    Energy Technology Data Exchange (ETDEWEB)

    Choi, Yong Suk; Kim, Gyu Tae; Hwang, Eui Hwan; Lee, Min Ja; Choi, Sam Jin; Park, Hun Kuk [Department of Oral and Maxillofacial Radiology, School of Dentistry and Institute of Oral Biology, Kyung Hee University, Seoul (Korea, Republic of); Park, Jeong Hoon [Department of Biomedical Engineering, College of Medicine, Kyung Hee University, Seoul (Korea, Republic of)

    2009-12-15

    The purpose of this study was to investigate how to detect proximal caries using line profile and validate linear measurements of proximal caries lesions by basic digital manipulation of radiographic images. The X-ray images of control group (15) and caries teeth (15) from patients were used. For each image, the line profile at the proximal caries-susceptible zone was calculated. To evaluate the contrast as a function of line profile to detect proximal caries, a difference coefficient (D) that indicates the relative difference between caries and sound dentin or intact enamel was measured. Mean values of D were 0.0354 {+-} 0.0155 in non-caries and 0.2632 {+-} 0.0982 in caries (p<0.001). The mean values of caries group were higher than non-caries group and there was correlation between proximal dental caries and D. It is demonstrated that the mean value of D from caries group was higher than that of control group. From the result, values of D possess great potentiality as a new detection parameter for proximal dental caries.

  12. Solar Flare Termination Shock and Synthetic Emission Line Profiles of the Fe xxi 1354.08 Å Line

    Energy Technology Data Exchange (ETDEWEB)

    Guo, Lijia [Lockheed Martin Solar and Astrophysics Laboratory, Palo Alto, CA (United States); Li, Gang [Department of Space Science and CSPAR, University of Alabama in Huntsville, Huntsville, AL (United States); Reeves, Kathy; Raymond, John, E-mail: gang.li@uah.edu [Harvard-Smithsonian Center for Astrophysics, Boston, MA (United States)

    2017-09-01

    Solar flares are among the most energetic phenomena that occur in the solar system. In the standard solar flare model, a fast mode shock, often referred to as the flare termination shock (TS), can exist above the loop-top source of hard X-ray emissions. The existence of the TS has been recently related to spectral hardening of a flare’s hard X-ray spectra at energies >300 keV. Observations of the Fe xxi 1354.08 Å line during solar flares by the Interface Region Imaging Spectrograph ( IRIS ) spacecraft have found significant redshifts with >100 km s{sup −1}, which is consistent with a reconnection downflow. The ability to detect such a redshift with IRIS suggests that one may be able to use IRIS observations to identify flare TSs. Using a magnetohydrodynamic simulation to model magnetic reconnection of a solar flare and assuming the existence of a TS in the downflow of the reconnection plasma, we model the synthetic emission of the Fe xxi 1354.08 line in this work. We show that the existence of the TS in the solar flare may manifest itself in the Fe xxi 1354.08 Å line.

  13. Plasticity and X-ray Line Profile Analysis of the semicrystalline polymer poly(3-hydroxybutyrate)

    Energy Technology Data Exchange (ETDEWEB)

    Spieckermann, F; Wilhelm, H; Schafler, E; Kerber, M; Zehetbauer, M J [Research Group Physics of Nanostructured Materials, Faculty of Physics, University of Vienna, Boltzmanngasse 5, Wien (Austria); Bernstorff, S [Sincrotrone ELETTRA Trieste, Strada Statale 14 - km 163.5 in AREA Science Park, 34012 Basovizza, Trieste (Italy)

    2010-07-01

    The evolution of the microstructure during compressive deformation of the biodegradable polymer poly(3-hydroxybutyrate) (P3HB) was investigated in-situ via X-ray diffraction using synchrotron radiation. Flow curves were measured in-situ together with X-ray profiles for several degrees of deformation. The profiles were analysed using Multi-Reflection X-ray Line Profile Analysis (MXPA) adapted by the authors for semicrystalline polymers providing lamella thickness, crystallinity, and the presence and density of dislocations as a function of the deformation. In contrast to previous investigations in {alpha} crystallised isotactic polypropylene ({alpha}-iPP), P3HB does not exhibit a deformation induced increase of the dislocation density which suggests mechanisms other than dislocations to be involved in plastic deformation of P3HB.

  14. Large-Scale Profiling of Kinase Dependencies in Cancer Cell Lines.

    Science.gov (United States)

    Campbell, James; Ryan, Colm J; Brough, Rachel; Bajrami, Ilirjana; Pemberton, Helen N; Chong, Irene Y; Costa-Cabral, Sara; Frankum, Jessica; Gulati, Aditi; Holme, Harriet; Miller, Rowan; Postel-Vinay, Sophie; Rafiq, Rumana; Wei, Wenbin; Williamson, Chris T; Quigley, David A; Tym, Joe; Al-Lazikani, Bissan; Fenton, Timothy; Natrajan, Rachael; Strauss, Sandra J; Ashworth, Alan; Lord, Christopher J

    2016-03-15

    One approach to identifying cancer-specific vulnerabilities and therapeutic targets is to profile genetic dependencies in cancer cell lines. Here, we describe data from a series of siRNA screens that identify the kinase genetic dependencies in 117 cancer cell lines from ten cancer types. By integrating the siRNA screen data with molecular profiling data, including exome sequencing data, we show how vulnerabilities/genetic dependencies that are associated with mutations in specific cancer driver genes can be identified. By integrating additional data sets into this analysis, including protein-protein interaction data, we also demonstrate that the genetic dependencies associated with many cancer driver genes form dense connections on functional interaction networks. We demonstrate the utility of this resource by using it to predict the drug sensitivity of genetically or histologically defined subsets of tumor cell lines, including an increased sensitivity of osteosarcoma cell lines to FGFR inhibitors and SMAD4 mutant tumor cells to mitotic inhibitors. Copyright © 2016 The Authors. Published by Elsevier Inc. All rights reserved.

  15. Large-Scale Profiling of Kinase Dependencies in Cancer Cell Lines

    Directory of Open Access Journals (Sweden)

    James Campbell

    2016-03-01

    Full Text Available One approach to identifying cancer-specific vulnerabilities and therapeutic targets is to profile genetic dependencies in cancer cell lines. Here, we describe data from a series of siRNA screens that identify the kinase genetic dependencies in 117 cancer cell lines from ten cancer types. By integrating the siRNA screen data with molecular profiling data, including exome sequencing data, we show how vulnerabilities/genetic dependencies that are associated with mutations in specific cancer driver genes can be identified. By integrating additional data sets into this analysis, including protein-protein interaction data, we also demonstrate that the genetic dependencies associated with many cancer driver genes form dense connections on functional interaction networks. We demonstrate the utility of this resource by using it to predict the drug sensitivity of genetically or histologically defined subsets of tumor cell lines, including an increased sensitivity of osteosarcoma cell lines to FGFR inhibitors and SMAD4 mutant tumor cells to mitotic inhibitors.

  16. Profile reconstruction method adopting parameterized re-projection errors of laser lines generated from bi-cuboid references.

    Science.gov (United States)

    Xu, Guan; Yuan, Jing; Li, Xiaotao; Su, Jian

    2017-11-27

    A flexible reconstruction method, which is based on the line re-projection errors of the laser plane, is presented for the profile recovery. The bi-cuboid references are designed to cover the large view-field of the camera. The local intrinsic and extrinsic parameter matrices of the camera are initially contributed by the RQ decomposition. Then the balance model is demonstrated to obtain the global parameter matrices in view of the refined projection in the camera coordinate system. The flexible laser plane is solved by the Plücker matrices of the projection laser lines that are generated from the homographies of the cubical references and the global parameter matrices. Furthermore, the laser plane and global parameter matrices are improved by the cost function that is constructed by the re-projection errors of the parameterized laser lines on the references. The reconstruction experiments are performed to verify the validity and the accuracy of the optimization method and the initial method. The impact factors of the measurement distance, the reference distance and the test distance are investigated in the experiments. The average reconstruction errors are 1.14 mm, 1.13 mm, 1.15 mm and 1.17 mm in the four groups of experiments, which shows the good application prospect of the profile reconstructions.

  17. Modelling chemical depletion profiles in regolith

    Science.gov (United States)

    Brantley, S.L.; Bandstra, J.; Moore, J.; White, A.F.

    2008-01-01

    Chemical or mineralogical profiles in regolith display reaction fronts that document depletion of leachable elements or minerals. A generalized equation employing lumped parameters was derived to model such ubiquitously observed patterns:C = frac(C0, frac(C0 - Cx = 0, Cx = 0) exp (??ini ?? over(k, ??) ?? x) + 1)Here C, Cx = 0, and Co are the concentrations of an element at a given depth x, at the top of the reaction front, or in parent respectively. ??ini is the roughness of the dissolving mineral in the parent and k???? is a lumped kinetic parameter. This kinetic parameter is an inverse function of the porefluid advective velocity and a direct function of the dissolution rate constant times mineral surface area per unit volume regolith. This model equation fits profiles of concentration versus depth for albite in seven weathering systems and is consistent with the interpretation that the surface area (m2 mineral m- 3 bulk regolith) varies linearly with the concentration of the dissolving mineral across the front. Dissolution rate constants can be calculated from the lumped fit parameters for these profiles using observed values of weathering advance rate, the proton driving force, the geometric surface area per unit volume regolith and parent concentration of albite. These calculated values of the dissolution rate constant compare favorably to literature values. The model equation, useful for reaction fronts in both steady-state erosional and quasi-stationary non-erosional systems, incorporates the variation of reaction affinity using pH as a master variable. Use of this model equation to fit depletion fronts for soils highlights the importance of buffering of pH in the soil system. Furthermore, the equation should allow better understanding of the effects of important environmental variables on weathering rates. ?? 2008.

  18. Recovering the systemic redshift of galaxies from their Lyman-alpha line profile

    Science.gov (United States)

    Verhamme, A.; Garel, T.; Ventou, E.; Contini, T.; Bouché, N.; Herenz, E. C.; Richard, J.; Bacon, R.; Schmidt, K. B.; Maseda, M.; Marino, R. A.; Brinchmann, J.; Cantalupo, S.; Caruana, J.; Clément, B.; Diener, C.; Drake, A. B.; Hashimoto, T.; Inami, H.; Kerutt, J.; Kollatschny, W.; Leclercq, F.; Patrício, V.; Schaye, J.; Wisotzki, L.; Zabl, J.

    2018-04-01

    The Lyman alpha (Lyα) line of Hydrogen is a prominent feature in the spectra of star-forming galaxies, usually redshifted by a few hundreds of km s-1 compared to the systemic redshift. This large offset hampers follow-up surveys, galaxy pair statistics and correlations with quasar absorption lines when only Lyα is available. We propose diagnostics that can be used to recover the systemic redshift directly from the properties of the Lyα line profile. We use spectroscopic observations of Lyman-Alpha Emitters (LAEs) for which a precise measurement of the systemic redshift is available. Our sample contains 13 sources detected between z ≈ 3 and z ≈ 6 as part of various Multi Unit Spectroscopic Explorer (MUSE) Guaranteed Time Observations (GTO). We also include a compilation of spectroscopic Lyα data from the literature spanning a wide redshift range (z ≈ 0 - 8). First, restricting our analysis to double-peaked Lyα spectra, we find a tight correlation between the velocity offset of the red peak with respect to the systemic redshift, V_peak^red, and the separation of the peaks. Secondly, we find a correlation between V_peak^red and the full width at half maximum of the Lyα line. Fitting formulas, to estimate systemic redshifts of galaxies with an accuracy of ≤100 km s-1 when only the Lyα emission line is available, are given for the two methods.

  19. Molecular Line Survey of CRL618 and Complete Modeling

    Science.gov (United States)

    Pardo, J. R.; Cernicharo, J.; Goicoechea, J. R.; Phillips, T. G.

    We present a complete survey and model of the emission from the C-rich protoplanetary nebula CRL 618 at the frequencies accessible with the IRAM-30m telescope (80.25-115.75 GHz, 131.25-179.25 GHz, and 204.25-275.25 GHz) and some results of still on-going observations at the Caltech Submillimeter Observatory (280-360 GHz). Although the number of lines detected is large (several hundreds), the number of chemical species from which they arise is rather small. In fact, lines from cyanopolyynes HC3N and HC5N dominate by far the long-wave spectrum of CRL618, with detection of numerous vibrationally excited states and isotopic substituted species. Most of detected species exhibit P-Cygni profiles at the lowest frequencies (3 mm window), and they evolve to pure emission as frequency increases. This fact can only be explained by the behavior of the continuum emission arising from the inner ultracompact HII region and surrounding dust. The data set itself has been used to characterize the continuum emission by averaging all the continuum measurements during the time span of the survey (~8 years). The physical parameters of the different gas regions have been established by studying the large number of detected cyanopolyynes lines. Using these constraints, the abundances of many other species relative to HC3N could also be determined and a general model, that reproduce the whole data set at a very detailed level of agreement, could be built. 1. Introduction The motivation to perform the complete millimeter line survey presented here with the IRAM-30m telescope has been to gather the most complete information on the molecular content in one particular stage (protoplanetary nebula, PPNe) of stellar evolution from the Asymptotic Giant Branch (AGB) to Planetary Nebulae (PN), of which CRL618 is the best example. Its chemical richness and its complex morphology are now very well known. Detailed chemical models for this object have been developed (Cernicharo 2004) indicating the

  20. Comprehensive expression profiling of tumor cell lines identifies molecular signatures of melanoma progression.

    Directory of Open Access Journals (Sweden)

    Byungwoo Ryu

    2007-07-01

    Full Text Available Gene expression profiling has revolutionized our ability to molecularly classify primary human tumors and significantly enhanced the development of novel tumor markers and therapies; however, progress in the diagnosis and treatment of melanoma over the past 3 decades has been limited, and there is currently no approved therapy that significantly extends lifespan in patients with advanced disease. Profiling studies of melanoma to date have been inconsistent due to the heterogeneous nature of this malignancy and the limited availability of informative tissue specimens from early stages of disease.In order to gain an improved understanding of the molecular basis of melanoma progression, we have compared gene expression profiles from a series of melanoma cell lines representing discrete stages of malignant progression that recapitulate critical characteristics of the primary lesions from which they were derived. Here we describe the unsupervised hierarchical clustering of profiling data from melanoma cell lines and melanocytes. This clustering identifies two distinctive molecular subclasses of melanoma segregating aggressive metastatic tumor cell lines from less-aggressive primary tumor cell lines. Further analysis of expression signatures associated with melanoma progression using functional annotations categorized these transcripts into three classes of genes: 1 Upregulation of activators of cell cycle progression, DNA replication and repair (CDCA2, NCAPH, NCAPG, NCAPG2, PBK, NUSAP1, BIRC5, ESCO2, HELLS, MELK, GINS1, GINS4, RAD54L, TYMS, and DHFR, 2 Loss of genes associated with cellular adhesion and melanocyte differentiation (CDH3, CDH1, c-KIT, PAX3, CITED1/MSG-1, TYR, MELANA, MC1R, and OCA2, 3 Upregulation of genes associated with resistance to apoptosis (BIRC5/survivin. While these broad classes of transcripts have previously been implicated in the progression of melanoma and other malignancies, the specific genes identified within each class

  1. Tornado risk model for transmission line design

    CSIR Research Space (South Africa)

    Milford, RV

    1997-11-01

    Full Text Available is in combination with ice loading. The wind load used in most codes of practice and design recommendations for transmission line design have until recently been based almost exclusively on large-scale wind storms, which may include severe storms such as hurricanes...

  2. Multiobjective Fuzzy Mixed Assembly Line Sequencing Optimization Model

    Directory of Open Access Journals (Sweden)

    Farzad Tahriri

    2014-01-01

    Full Text Available It can be deduced from previous studies that there exists a research gap in assembly line sequencing optimization model for mixed-model production lines. In particular, there is a lack of studies which focus on the integration between job shop and assembly lines using fuzzy techniques. Hence, this paper is aimed at addressing the multiobjective mixed-model assembly line sequencing problem by integrating job shop and assembly production lines for factories with modular layouts. The primary goal is to minimize the make-span, setup time, and cost simultaneously in mixed-model assembly lines. Such conflicting goals arise when switching between different products. A genetic algorithm (GA approach is used to solve this problem, in which trapezoidal fuzzy numbers are implemented for variables such as operation and travelling time in order to generate results with higher accuracy and representative of real-case data.

  3. Histone modification profiling in breast cancer cell lines highlights commonalities and differences among subtypes.

    Science.gov (United States)

    Xi, Yuanxin; Shi, Jiejun; Li, Wenqian; Tanaka, Kaori; Allton, Kendra L; Richardson, Dana; Li, Jing; Franco, Hector L; Nagari, Anusha; Malladi, Venkat S; Coletta, Luis Della; Simper, Melissa S; Keyomarsi, Khandan; Shen, Jianjun; Bedford, Mark T; Shi, Xiaobing; Barton, Michelle C; Lee Kraus, W; Li, Wei; Dent, Sharon Y R

    2018-02-20

    Epigenetic regulators are frequently mutated or aberrantly expressed in a variety of cancers, leading to altered transcription states that result in changes in cell identity, behavior, and response to therapy. To define alterations in epigenetic landscapes in breast cancers, we profiled the distributions of 8 key histone modifications by ChIP-Seq, as well as primary (GRO-seq) and steady state (RNA-Seq) transcriptomes, across 13 distinct cell lines that represent 5 molecular subtypes of breast cancer and immortalized human mammary epithelial cells. Using combinatorial patterns of distinct histone modification signals, we defined subtype-specific chromatin signatures to nominate potential biomarkers. This approach identified AFAP1-AS1 as a triple negative breast cancer-specific gene associated with cell proliferation and epithelial-mesenchymal-transition. In addition, our chromatin mapping data in basal TNBC cell lines are consistent with gene expression patterns in TCGA that indicate decreased activity of the androgen receptor pathway but increased activity of the vitamin D biosynthesis pathway. Together, these datasets provide a comprehensive resource for histone modification profiles that define epigenetic landscapes and reveal key chromatin signatures in breast cancer cell line subtypes with potential to identify novel and actionable targets for treatment.

  4. The profile of attention differs between locations orthogonal to and in line with reach direction.

    Science.gov (United States)

    Stewart, Emma E M; Ma-Wyatt, Anna

    2017-11-01

    People make movements in a variety of directions when interacting with the world around them. It has been well documented that attention shifts to the goal of an upcoming movement, whether the movement is a saccade or a reach. However, recent evidence suggests that the direction of a movement may influence the spatial spread of attention (Stewart & Ma-Wyatt, 2015, Journal of Vision, 15(5), 10). We investigated whether the spatiotemporal profile of attention differs depending on where that location is situated relative to the direction of movement, and if this pattern is consistent across different movement effectors. We compared attentional facilitation at locations in line with or orthogonal to the movement, for reach-only, reach-plus-saccade, and saccade-only conditions. Results show that the spatiotemporal profile of attention differs across different movement combinations, and is also different at target locations orthogonal to and in line with the movement direction. Specifically, when a reach alone was made, there was a general decrease in attention at all locations during the movement and a general increase in attention at all locations with a saccade only. However, the concurrent reach and saccade condition showed a premovement attentional facilitation at locations orthogonal to movement direction, but not those in line with the movement direction. These results suggest attentional guidance may be more important at differing time points, depending on the type of movement.

  5. Correlations between RNA and protein expression profiles in 23 human cell lines

    Directory of Open Access Journals (Sweden)

    Pontén Fredrik

    2009-08-01

    Full Text Available Abstract Background The Central Dogma of biology holds, in famously simplified terms, that DNA makes RNA makes proteins, but there is considerable uncertainty regarding the general, genome-wide correlation between levels of RNA and corresponding proteins. Therefore, to assess degrees of this correlation we compared the RNA profiles (determined using both cDNA- and oligo-based microarrays and protein profiles (determined immunohistochemically in tissue microarrays of 1066 gene products in 23 human cell lines. Results A high mean correlation coefficient (0.52 was obtained from the pairwise comparison of RNA levels determined by the two platforms. Significant correlations, with correlation coefficients exceeding 0.445, between protein and RNA levels were also obtained for a third of the specific gene products. However, the correlation coefficients between levels of RNA and protein products of specific genes varied widely, and the mean correlations between the protein and corresponding RNA levels determined using the cDNA- and oligo-based microarrays were 0.25 and 0.20, respectively. Conclusion Significant correlations were found in one third of the examined RNA species and corresponding proteins. These results suggest that RNA profiling might provide indirect support to antibodies' specificity, since whenever a evident correlation between the RNA and protein profiles exists, this can sustain that the antibodies used in the immunoassay recognized their cognate antigens.

  6. Performance comparison of digital microRNA profiling technologies applied on human breast cancer cell lines.

    Directory of Open Access Journals (Sweden)

    Erik Knutsen

    Full Text Available MicroRNA profiling represents an important first-step in deducting individual RNA-based regulatory function in a cell, tissue, or at a specific developmental stage. Currently there are several different platforms to choose from in order to make the initial miRNA profiles. In this study we investigate recently developed digital microRNA high-throughput technologies. Four different platforms were compared including next generation SOLiD ligation sequencing and Illumina HiSeq sequencing, hybridization-based NanoString nCounter, and miRCURY locked nucleic acid RT-qPCR. For all four technologies, full microRNA profiles were generated from human cell lines that represent noninvasive and invasive tumorigenic breast cancer. This study reports the correlation between platforms, as well as a more extensive analysis of the accuracy and sensitivity of data generated when using different platforms and important consideration when verifying results by the use of additional technologies. We found all the platforms to be highly capable for microRNA analysis. Furthermore, the two NGS platforms and RT-qPCR all have equally high sensitivity, and the fold change accuracy is independent of individual miRNA concentration for NGS and RT-qPCR. Based on these findings we propose new guidelines and considerations when performing microRNA profiling.

  7. Gain Enhancement of Low-Profile, Electrically Small Capacitive Feed Antennas Using Stacked Meander Lines

    Directory of Open Access Journals (Sweden)

    Kazuki Ide

    2010-01-01

    Full Text Available The present paper describes the gain enhancement of a small and low-profile linear antenna with capacitive feed (C-feed using three metallic layers. The antenna has very small leakage current on the outer conductor of the coaxial cable and can easily control the imaginary part of the input impedance. The gain of the stacked three-layer meander line antenna, with the meander line in the middle layer being opposite to that of the other two layers, has increased by around 7 dB compared to the single layered C-feed antenna. The antenna gain is discussed based on simulated and measured results, which demonstrates that the antenna has successfully achieved the acceptable impedance and sufficient gain for mobile terminals and RFID tags.

  8. Sizes of flaring kernels in various parts of the Hα line profile

    Directory of Open Access Journals (Sweden)

    K. Radziszewski

    2008-10-01

    Full Text Available In this paper we present new results of spectra-photometrical investigations of the flaring kernels' sizes and their intensities measured simultaneously in various parts of the Hα line profile. Our investigations were based on the very high temporal resolution spectral-imaging observations of the solar flares collected with Large Coronagraph (LC, Multi-channel Subtractive Double Pass Spectrograph and Solar Eclipse Coronal Imaging System (MSDP-SECIS at Białkow Observatory (University of Wrocław, Poland.

    We have found that the areas of the investigated individual flaring kernels vary in time and in wavelengths, as well as the intensities and areas of the Hα flaring kernels decreased systematically when observed in consecutive wavelengths toward the wings of the Hα line. Our result could be explained as an effect of the cone-shaped lower parts of the magnetic loops channeling high energy particle beams exciting chromospheric plasma.

  9. Gene expression profile of colon cancer cell lines treated with SN-38

    DEFF Research Database (Denmark)

    Wallin, A; Francis, P; Nilbert, M

    2010-01-01

    the incidence in fact has increased. To improve chemotherapy and enable personalised treatment, the need of biomarkers is of great significance. In this study, we evaluated the gene expression profiles of the colon cancer cell lines treated with SN-38, the active metabolite of topoisomerase-1 inhibitor......Colorectal cancer is the third most common form of cancer in the industrial countries. Due to advances regarding the treatments, primarily development of improved surgical methods and the ability to make the earlier diagnosis, the mortality has remained constant during the past decades even though...

  10. mRNA expression profile in DLD-1 and MOLT-4 cancer cell lines cultured under Microgravity

    Data.gov (United States)

    National Aeronautics and Space Administration — DLD-1 and MOLT-4 cell lines were cultured in a Rotating cell culture system to simulate microgravity and mRNA expression profile was observed in comparison to Static...

  11. Deep seismic profiling using off-line recorders, Miura Peninsula, Kanto, Japan.

    Science.gov (United States)

    Kawamura, T.; Hirata, N.; Sato, H.; Onishi, M.; Noda, K.

    2003-12-01

    The deep seismic profiling around Metropolitan Tokyo (Kanto area) began from 2002 under the project named . The deep seismic profiling was performed along the Tokyo Bay (Tokyo Bay 2003) from July to August in 2003, to obtain an image of the source fault of the Kanto earthquake of 1923 (M7.9), and deeper extension of inland active faults in Miura Peninsula. In the Tokyo Bay 2003, seismic reflection data were acquired along a 71-km-long seismic line from the Miura Peninsula to Tokyo Bay, using digital-telemetry cable system, including ocean bottom cables. However, this seismic line at Miura Peninsula passes through the densely populated area and due to the cultural noise the low S/N ratio was expected. Keeping away from the noise along the cable-type receiver line, 51 off-line recorders with a 4.5 Hz and 3-compornent geophone were deployed at carefully selected, quiet receiver points. During 90 days continuous recording, seismic signals produced by four vibroseis trucks at 195 locations and air-guns (1500 cu. inch) at 4280 locations were recorded including ca. 150 of earthquakes. Judging from the preliminary receiver gathers, two later phases (A and B) are recognized. The later phase A, located at TWT (Two-way travel time) 4 to 5.5 sec., is interpreted as a reflection from the top of the Philippine Sea Plate. The later phase B at TWT 7 to 8 sec. corresponds to the deeper reflection under the Philippine Sea Plate, respectively.

  12. In-line height profiling metrology sensor for zero defect production control

    Science.gov (United States)

    Snel, Rob; Winters, Jasper; Liebig, Thomas; Jonker, Wouter

    2017-06-01

    Contemporary production systems of mechanical precision parts show challenges as increased complexity, tolerances shrinking to sub-microns and yield losses that must be mastered to the extreme. More advanced automation and process control is required to accomplish this task. Often a solution based on feedforward/feedback control is chosen requiring innovative and more advanced in line metrology. This article concentrates first on the context of in line metrology for process control and then on the development of a specific in line height profiling sensor. The novel sensor technology is based on full field time domain white light interferometry which is well know from the quality lab. The novel metrology system is to be mounted close to the production equipment, as required to minimize time delay in the control loop, and is thereby fully exposed to vibrations. This sensor is innovated to perform in line with an orders of magnitude faster throughput than laboratory instruments; it's robust to withstand the rigors of workshops and has a height resolution that is in the nanometer range.

  13. Partial dust obscuration in active galactic nuclei as a cause of broad-line profile and lag variability, and apparent accretion disc inhomogeneities

    Science.gov (United States)

    Gaskell, C. Martin; Harrington, Peter Z.

    2018-04-01

    The profiles of the broad emission lines of active galactic nuclei (AGNs) and the time delays in their response to changes in the ionizing continuum ("lags") give information about the structure and kinematics of the inner regions of AGNs. Line profiles are also our main way of estimating the masses of the supermassive black holes (SMBHs). However, the profiles often show ill-understood, asymmetric structure and velocity-dependent lags vary with time. Here we show that partial obscuration of the broad-line region (BLR) by outflowing, compact, dusty clumps produces asymmetries and velocity-dependent lags similar to those observed. Our model explains previously inexplicable changes in the ratios of the hydrogen lines with time and velocity, the lack of correlation of changes in line profiles with variability of the central engine, the velocity dependence of lags, and the change of lags with time. We propose that changes on timescales longer than the light-crossing time do not come from dynamical changes in the BLR, but are a natural result of the effect of outflowing dusty clumps driven by radiation pressure acting on the dust. The motion of these clumps offers an explanation of long-term changes in polarization. The effects of the dust complicate the study of the structure and kinematics of the BLR and the search for sub-parsec SMBH binaries. Partial obscuration of the accretion disc can also provide the local fluctuations in luminosity that can explain sizes deduced from microlensing.

  14. LINES

    Directory of Open Access Journals (Sweden)

    Minas Bakalchev

    2015-10-01

    Full Text Available The perception of elements in a system often creates their interdependence, interconditionality, and suppression. The lines from a basic geometrical element have become the model of a reductive world based on isolation according to certain criteria such as function, structure, and social organization. Their traces are experienced in the contemporary world as fragments or ruins of a system of domination of an assumed hierarchical unity. How can one release oneself from such dependence or determinism? How can the lines become less “systematic” and forms more autonomous, and less reductive? How is a form released from modernistic determinism on the new controversial ground? How can these elements or forms of representation become forms of action in the present complex world? In this paper, the meaning of lines through the ideas of Le Corbusier, Leonidov, Picasso, and Hitchcock is presented. Spatial research was made through a series of examples arising from the projects of the architectural studio “Residential Transformations”, which was a backbone for mapping the possibilities ranging from playfulness to exactness, as tactics of transformation in the different contexts of the contemporary world.

  15. Anomalies in resonant absorption line profiles of atoms with large hyperfine splitting

    International Nuclear Information System (INIS)

    Parkhomenko, A.I.; Pod'yachev, S.P.; Privalov, T.I.; Shalagin, A.M.

    1997-01-01

    We examine a monochromatic absorption line in the velocity-nonselective excitation of atoms when the components of the hyperfine stricture of the electronic ground states are optically pumped. We show that the absorption lines possess unusual substructures for some values of the hyperfine splitting of the ground state (which exceed the Doppler absorption linewidth severalfold). These substructures in the absorption spectrum are most apparent if the hyperfine structure of the excited electronic state is taken into account. We calculate the absorption spectra of monochromatic light near the D 1 and D 2 lines of atomic rubidium 85,87 Rb. With real hyperfine splitting taken into account, the D 1 and D 2 lines are modeled by 4- and 6-level diagrams, respectively. Finally, we show that atomic rubidium vapor can be successfully used to observe the spectral features experimentally

  16. SNP array profiling of mouse cell lines identifies their strains of origin and reveals cross-contamination and widespread aneuploidy.

    Science.gov (United States)

    Didion, John P; Buus, Ryan J; Naghashfar, Zohreh; Threadgill, David W; Morse, Herbert C; de Villena, Fernando Pardo-Manuel

    2014-10-03

    The crisis of Misidentified and contaminated cell lines have plagued the biological research community for decades. Some repositories and journals have heeded calls for mandatory authentication of human cell lines, yet misidentification of mouse cell lines has received little publicity despite their importance in sponsored research. Short tandem repeat (STR) profiling is the standard authentication method, but it may fail to distinguish cell lines derived from the same inbred strain of mice. Additionally, STR profiling does not reveal karyotypic changes that occur in some high-passage lines and may have functional consequences. Single nucleotide polymorphism (SNP) profiling has been suggested as a more accurate and versatile alternative to STR profiling; however, a high-throughput method for SNP-based authentication of mouse cell lines has not been described. We have developed computational methods (Cell Line Authentication by SNP Profiling, CLASP) for cell line authentication and copy number analysis based on a cost-efficient SNP array, and we provide a reference database of commonly used mouse strains and cell lines. We show that CLASP readily discriminates among cell lines of diverse taxonomic origins, including multiple cell lines derived from a single inbred strain, intercross or wild caught mouse. CLASP is also capable of detecting contaminants present at concentrations as low as 5%. Of the 99 cell lines we tested, 15 exhibited substantial divergence from the reported genetic background. In all cases, we were able to distinguish whether the authentication failure was due to misidentification (one cell line, Ba/F3), the presence of multiple strain backgrounds (five cell lines), contamination by other cells and/or the presence of aneuploid chromosomes (nine cell lines). Misidentification and contamination of mouse cell lines is potentially as widespread as it is in human cell culture. This may have substantial implications for studies that are dependent on the

  17. Numerical Evaluation of Parameter Correlation in the Hartmann-Tran Line Profile

    Science.gov (United States)

    Adkins, Erin M.; Reed, Zachary; Hodges, Joseph T.

    2017-06-01

    The partially correlated quadratic, speed-dependent hard-collision profile (pCqSDHCP), for simplicity referred to as the Hartmann-Tran profile (HTP), has been recommended as a generalized lineshape for high resolution spectroscopy. The HTP parameterizes complex collisional effects such as Dicke narrowing, speed dependent narrowing, and correlations between velocity-changing and dephasing collisions, while also simplifying to simpler profiles that are widely used, such as the Voigt profile. As advanced lineshape profiles are adopted by more researchers, it is important to understand the limitations that data quality has on the ability to retrieve physically meaningful parameters using sophisticated lineshapes that are fit to spectra of finite signal-to-noise ratio. In this work, spectra were simulated using the HITRAN Application Programming Interface (HAPI) across a full range of line parameters. Simulated spectra were evaluated to quantify the precision with which fitted lineshape parameters can be determined at a given signal-to-noise ratio, focusing on the numerical correlation between the retrieved Dicke narrowing frequency and the velocity-changing and dephasing collisions correlation parameter. Tran, H., N. Ngo, and J.-M. Hartmann, Journal of Quantitative Spectroscopy and Radiative Transfer 2013. 129: p. 89-100. Tennyson, et al., Pure Appl. Chem. 2014, 86: p. 1931-1943. Kochanov, R.V., et al., Journal of Quantitative Spectroscopy and Radiative Transfer 2016. 177: p. 15-30. Tran, H., N. Ngo, and J.-M. Hartmann, Journal of Quantitative Spectroscopy and Radiative Transfer 2013. 129: p. 199-203.

  18. The profiles of Fe K α line from the inhomogeneous accretion flow

    Science.gov (United States)

    Yu, Xiao-Di; Ma, Ren-Yi; Li, Ya-Ping; Zhang, Hui; Fang, Tao-Tao

    2018-05-01

    The clumpy disc, or inhomogeneous accretion flow, has been proposed to explain the properties of accreting black hole systems. However, the observational evidence remains to be explored. In this work, we calculate the profiles of Fe K α lines emitted from the inhomogeneous accretion flow through the ray-tracing technique, in order to find possible observable signals of the clumps. Compared with the skewed double-peaked profile of the continuous standard accretion disc, the lines show a multipeak structure when the emissivity index is not very steep. The peaks and wings are affected by the position and size of the cold clumps. When the clump is small and is located in the innermost region, due to the significant gravitational redshift, the blue wing can overlap with the red wing of the outer cold disc/clump, forming a fake peak or greatly enhancing the red peak. Given high enough resolution, it is easier to constrain the clumps around the supermassive black holes than the clumps in stellar mass black holes due to the thermal Doppler effect.

  19. The Profiles of Fe Kα Line From the Inhomogeneous Accretion Flow

    Science.gov (United States)

    Yu, Xiao-Di; Ma, Ren-Yi; Li, Ya-Ping; Zhang, Hui; Fang, Tao-Tao

    2018-02-01

    The clumpy disc, or inhomogeneous accretion flow, has been proposed to explain the properties of accreting black hole systems. However, the observational evidences remain to be explored. In this work, we calculate the profiles of Fe Kα lines emitted from the inhomogeneous accretion flow through the ray-tracing technique, in order to find possible observable signals of the clumps. Compared with the skewed double-peaked profile of the continuous standard accretion disc, the lines show a multi-peak structure when the emissivity index is not very steep. The peaks and wings are affected by the position and size of the cold clumps. When the clump is small and is located in the innermost region, due to the significant gravitational redshift, the blue wing can overlap with the red wing of the outer cold disc/clump, forming a fake peak or greatly enhancing the red peak. Given high enough resolution, it is easier to constrain the clumps around the supermassive black holes than the clumps in stellar mass black holes due to the thermal Doppler effect.

  20. Amino Acid Profiling of Zinc Resistant Prostate Cancer Cell Lines: Associations With Cancer Progression.

    Science.gov (United States)

    Kratochvilova, Monika; Raudenska, Martina; Heger, Zbynek; Richtera, Lukas; Cernei, Natalia; Adam, Vojtech; Babula, Petr; Novakova, Marie; Masarik, Michal; Gumulec, Jaromir

    2017-05-01

    Failure in intracellular zinc accumulation is a key process in prostate carcinogenesis. Nevertheless, epidemiological studies of zinc administration have provided contradicting results. In order to examine the impact of the artificial intracellular increase of zinc(II) ions on prostate cancer metabolism, PNT1A, 22Rv1, and PC-3 prostatic cell lines-depicting different stages of cancer progression-and their zinc-resistant counterparts were used. To determine "benign" and "malignant" metabolic profiles, amino acid patterns, gene expression, and antioxidant capacity of these cell lines were assessed. Amino acid profiles were examined using an ion-exchange liquid chromatography. Intracellular zinc content was measured by atomic absorption spectrometry. Metallothionein was quantified using differential pulse voltammetry. The content of reduced glutathione was determined using high performance liquid chromatography coupled with an electrochemical detector. Cellular antioxidant capacity was determined by the ABTS test and gene expression analysis was performed by qRT-PCR. Long-term zinc treatment was shown to reroute cell metabolism from benign to more malignant type. Long-term application of high concentration of zinc(II) significantly enhanced cisplatin resistance, invasiveness, cellular antioxidant capacity, synthesis of glutathione, and expression of treatment resistance- and stemness-associated genes (SOX2, POU5F1, BIRC5). Tumorous cell lines universally displayed high accumulation of aspartate and sarcosine and depletion of essential amino acids. Increased aspartate/threonine, aspartate/methionine, and sarcosine/serine ratios were associated with cancer phenotype with high levels of sensitivity and specificity. Prostate 77: 604-616, 2017. © 2017 Wiley Periodicals, Inc. © 2017 Wiley Periodicals, Inc.

  1. Differential Expression Profiles of the Transcriptome in Breast Cancer Cell Lines Revealed by Next Generation Sequencing

    Directory of Open Access Journals (Sweden)

    Yu Shi

    2017-11-01

    Full Text Available Background/Aims: As MCF-7 and MDA-MB-231 cells are the typical cell lines of two clinical breast tumour subtypes, the aim of the present study was to elucidate the transcriptome differences between MCF-7 and MDA-MB-231 breast cancer cell lines. Methods: The mRNA, miRNA (MicroRNA and lncRNA (Long non-coding RNA expression profiles were examined using NGS (next generation sequencing instrument Illumina HiSeq-2500. GO (Gene Ontology and KEGG (Kyoto Encyclopedia of Genes and Genomes pathway analyses were performed to identify the biological functions of differentially expressed coding RNAs. Subsequently, we constructed an mRNA-ncRNA (non-coding RNA targeting regulatory network. Finally, we performed RT-qPCR (real-time quantitative PCR to confirm the NGS results. Results: There are sharp distinctions of the coding and non-coding RNA profiles between MCF-7 and MDA-MB-231 cell lines. Among the mRNAs and ncRNAs with the most differential expression, SLPI, SOD2, miR-7, miR-143 and miR-145 were highly expressed in MCF-7 cells, while CD55, KRT17, miR-21, miR-10b, miR-9, NEAT1 and PICSAR were over-expressed in MDA-MB-231 cells. Differentially expressed mRNAs are primarily involved in biological processes of locomotion, biological adhesion, ECM-receptor interaction pathway and focal adhesion. In the targeting regulatory network of differentially expressed RNAs, mRNAs and miRNAs are primarily associated with tumour metastasis, but the functions of lncRNAs remain uncharacterized. Conclusion: These results provide a basis for future studies of breast cancer metastasis and drug resistance.

  2. Analysis on Energy Conversion of Screw Centrifugal Pump in Impeller Domain Based on Profile Lines

    Directory of Open Access Journals (Sweden)

    Hui Quan

    2013-01-01

    Full Text Available In order to study the power capability of impeller and energy conversion mechanism of screw centrifugal pump, the methods of theoretical analysis and numerical simulation by computational fluid dynamics theory (CFD were adopted, specifically discussing the conditions of internal flow such as velocity, pressure, and concentration. When the medium is sand-water two-phase flow and dividing the rim of the lines and wheel lines of screw centrifugal pump to segments to analyze energy conversion capabilities which along the impeller profile lines with the dynamic head and hydrostatic head changer, the results show that the energy of fluid of the screw centrifugal pump is provided by helical segment, and the helical segment of the front of the impeller has played the role of multilevel increasing energy; the sand-water two phases move at different speeds because the different force field and the impeller propeller and centrifugal effect. As liquid phase is the primary phase, the energy conversion is mainly up to the change of liquid energy, the solid phase flows under the wrapped action of liquid, and solid energy is carried out through liquid indirectly.

  3. Inositol Pyrophosphate Profiling of Two HCT116 Cell Lines Uncovers Variation in InsP8 Levels.

    Directory of Open Access Journals (Sweden)

    Chunfang Gu

    Full Text Available The HCT116 cell line, which has a pseudo-diploid karotype, is a popular model in the fields of cancer cell biology, intestinal immunity, and inflammation. In the current study, we describe two batches of diverged HCT116 cells, which we designate as HCT116NIH and HCT116UCL. Using both gel electrophoresis and HPLC, we show that HCT116UCL cells contain 6-fold higher levels of InsP8 than HCT116NIH cells. This observation is significant because InsP8 is one of a group of molecules collectively known as 'inositol pyrophosphates' (PP-InsPs-highly 'energetic' and conserved regulators of cellular and organismal metabolism. Variability in the cellular levels of InsP8 within divergent HCT116 cell lines could have impacted the phenotypic data obtained in previous studies. This difference in InsP8 levels is more remarkable for being specific; levels of other inositol phosphates, and notably InsP6 and 5-InsP7, are very similar in both HCT116NIH and HCT116UCL lines. We also developed a new HPLC procedure to record 1-InsP7 levels directly (for the first time in any mammalian cell line; 1-InsP7 comprised <2% of total InsP7 in HCT116NIH and HCT116UCL lines. The elevated levels of InsP8 in the HCT116UCL lines were not due to an increase in expression of the PP-InsP kinases (IP6Ks and PPIP5Ks, nor to a decrease in the capacity to dephosphorylate InsP8. We discuss how the divergent PP-InsP profiles of the newly-designated HCT116NIH and HCT116UCL lines should be considered an important research opportunity: future studies using these two lines may uncover new features that regulate InsP8 turnover, and may also yield new directions for studying InsP8 function.

  4. High-resolution H-band spectroscopy of Be stars with SDSS-III/apogee. I. New Be stars, line identifications, and line profiles

    International Nuclear Information System (INIS)

    Chojnowski, S. Drew; Majewski, Steven R.; Hall, Matthew; Beaton, Rachael; Burton, Adam; Damke, Guillermo; Wilson, John; Whelan, David G.; Wisniewski, John P.; Shetrone, Matthew; Eikenberry, Steve; Hasselquist, Sten; Holtzman, Jon A.; Brewington, Howard; Brinkmann, J.; Mészáros, Szabolcs; Nidever, David; Schneider, Donald P.; Zasowski, Gail; Bizyaev, Dmitry

    2015-01-01

    The Apache Point Observatory Galactic Evolution Experiment (APOGEE) has amassed the largest ever collection of multi-epoch, high-resolution (R∼22,500), H-band spectra for B-type emission line (Be) stars. These stars were targeted by APOGEE as telluric standard stars and subsequently identified via visual inspection as Be stars based on H i Brackett series emission or shell absorption in addition to otherwise smooth continua and occasionally non-hydrogen emission features. The 128/238 APOGEE Be stars for which emission had never previously been reported serve to increase the total number of known Be stars by ∼6%. Because the H band is relatively unexplored compared to other wavelength regimes, we focus here on identification of the H-band lines and analysis of the emission peak velocity separations (Δv p ) and emission peak intensity ratios (V/R) of the usually double-peaked H i and non-hydrogen emission lines. H i Br11 emission is found to preferentially form in the circumstellar disks at an average distance of ∼2.2 stellar radii. Increasing Δv p toward the weaker Br12–Br20 lines suggests these lines are formed interior to Br11. By contrast, the observed IR Fe ii emission lines present evidence of having significantly larger formation radii; distinctive phase lags between IR Fe ii and H i Brackett emission lines further supports that these species arise from different radii in Be disks. Several emission lines have been identified for the first time including C i 16895, a prominent feature in the spectra for almost a fifth of the sample and, as inferred from relatively large Δv p compared to the Br11–Br20, a tracer of the inner regions of Be disks. Emission lines at 15760 Å and 16781 Å remain unidentified, but usually appear along with and always have similar line profile morphology to Fe ii 16878. Unlike the typical metallic lines observed for Be stars in the optical, the H-band metallic lines, such as Fe ii 16878, never exhibit any evidence of

  5. Actuator Line Modeling of Wind Turbine Wakes

    DEFF Research Database (Denmark)

    Troldborg, Niels

    2009-01-01

    with the 3D Navier Stokes solver EllipSys3D and a LES turbulence model. Simple models, based on applying body forces in the computational domain, are developed for imposing sheared and turbulent infow and their validity is discussed. A few computations on stand alone turbines are compared to measurements...... inflow shows that besides an expected vertical skewed wake the wake also becomes increasingly asymmetric in the horizontal direction as it is convected downstream. The latter phenomena, which is also often observed in measurements, is argued to be caused by the rotation of the wake. A detailed study...

  6. Tumor-Derived Cell Lines as Molecular Models of Cancer Pharmacogenomics.

    Science.gov (United States)

    Goodspeed, Andrew; Heiser, Laura M; Gray, Joe W; Costello, James C

    2016-01-01

    Compared with normal cells, tumor cells have undergone an array of genetic and epigenetic alterations. Often, these changes underlie cancer development, progression, and drug resistance, so the utility of model systems rests on their ability to recapitulate the genomic aberrations observed in primary tumors. Tumor-derived cell lines have long been used to study the underlying biologic processes in cancer, as well as screening platforms for discovering and evaluating the efficacy of anticancer therapeutics. Multiple -omic measurements across more than a thousand cancer cell lines have been produced following advances in high-throughput technologies and multigroup collaborative projects. These data complement the large, international cancer genomic sequencing efforts to characterize patient tumors, such as The Cancer Genome Atlas (TCGA) and International Cancer Genome Consortium (ICGC). Given the scope and scale of data that have been generated, researchers are now in a position to evaluate the similarities and differences that exist in genomic features between cell lines and patient samples. As pharmacogenomics models, cell lines offer the advantages of being easily grown, relatively inexpensive, and amenable to high-throughput testing of therapeutic agents. Data generated from cell lines can then be used to link cellular drug response to genomic features, where the ultimate goal is to build predictive signatures of patient outcome. This review highlights the recent work that has compared -omic profiles of cell lines with primary tumors, and discusses the advantages and disadvantages of cancer cell lines as pharmacogenomic models of anticancer therapies. ©2015 American Association for Cancer Research.

  7. Model-driven and software product line engineering

    CERN Document Server

    Royer, Jean-Claude

    2013-01-01

    Many approaches to creating Software Product Lines have emerged that are based on Model-Driven Engineering. This book introduces both Software Product Lines and Model-Driven Engineering, which have separate success stories in industry, and focuses on the practical combination of them. It describes the challenges and benefits of merging these two software development trends and provides the reader with a novel approach and practical mechanisms to improve software development productivity.The book is aimed at engineers and students who wish to understand and apply software product lines

  8. Theory and Circuit Model for Lossy Coaxial Transmission Line

    Energy Technology Data Exchange (ETDEWEB)

    Genoni, T. C.; Anderson, C. N.; Clark, R. E.; Gansz-Torres, J.; Rose, D. V.; Welch, Dale Robert

    2017-04-01

    The theory of signal propagation in lossy coaxial transmission lines is revisited and new approximate analytic formulas for the line impedance and attenuation are derived. The accuracy of these formulas from DC to 100 GHz is demonstrated by comparison to numerical solutions of the exact field equations. Based on this analysis, a new circuit model is described which accurately reproduces the line response over the entire frequency range. Circuit model calculations are in excellent agreement with the numerical and analytic results, and with finite-difference-time-domain simulations which resolve the skindepths of the conducting walls.

  9. Parent Prevention Communication Profiles and Adolescent Substance Use: A Latent Profile Analysis and Growth Curve Model

    Science.gov (United States)

    Choi, Hye Jeong; Miller-Day, Michelle; Shin, YoungJu; Hecht, Michael L.; Pettigrew, Jonathan; Krieger, Janice L.; Lee, JeongKyu; Graham, John W.

    2017-01-01

    This current study identifies distinct parent prevention communication profiles and examines whether youth with different parental communication profiles have varying substance use trajectories over time. Eleven schools in two rural school districts in the Midwestern United States were selected, and 784 students were surveyed at three time points from the beginning of 7th grade to the end of 8th grade. A series of latent profile analyses were performed to identify discrete profiles/subgroups of substance-specific prevention communication (SSPC). The results revealed a 4-profile model of SSPC: Active-Open, Passive-Open, Active-Silent, and Passive-Silent. A growth curve model revealed different rates of lifetime substance use depending on the youth’s SSPC profile. These findings have implications for parenting interventions and tailoring messages for parents to fit specific SSPC profiles. PMID:29056872

  10. Constraining the geometry and kinematics of the quasar broad emission line region using gravitational microlensing. I. Models and simulations

    Science.gov (United States)

    Braibant, L.; Hutsemékers, D.; Sluse, D.; Goosmann, R.

    2017-11-01

    Recent studies have shown that line profile distortions are commonly observed in gravitationally lensed quasar spectra. Often attributed to microlensing differential magnification, line profile distortions can provide information on the geometry and kinematics of the broad emission line region (BLR) in quasars. We investigate the effect of gravitational microlensing on quasar broad emission line profiles and their underlying continuum, combining the emission from simple representative BLR models with generic microlensing magnification maps. Specifically, we considered Keplerian disk, polar, and equatorial wind BLR models of various sizes. The effect of microlensing has been quantified with four observables: μBLR, the total magnification of the broad emission line; μcont, the magnification of the underlying continuum; as well as red/blue, RBI and wings/core, WCI, indices that characterize the line profile distortions. The simulations showed that distortions of line profiles, such as those recently observed in lensed quasars, can indeed be reproduced and attributed to the differential effect of microlensing on spatially separated regions of the BLR. While the magnification of the emission line μBLR sets an upper limit on the BLR size and, similarly, the magnification of the continuum μcont sets an upper limit on the size of the continuum source, the line profile distortions mainly depend on the BLR geometry and kinematics. We thus built (WCI,RBI) diagrams that can serve as diagnostic diagrams to discriminate between the various BLR models on the basis of quantitative measurements. It appears that a strong microlensing effect puts important constraints on the size of the BLR and on its distance to the high-magnification caustic. In that case, BLR models with different geometries and kinematics are more prone to produce distinctive line profile distortions for a limited number of caustic configurations, which facilitates their discrimination. When the microlensing

  11. HMMEditor: a visual editing tool for profile hidden Markov model

    Directory of Open Access Journals (Sweden)

    Cheng Jianlin

    2008-03-01

    Full Text Available Abstract Background Profile Hidden Markov Model (HMM is a powerful statistical model to represent a family of DNA, RNA, and protein sequences. Profile HMM has been widely used in bioinformatics research such as sequence alignment, gene structure prediction, motif identification, protein structure prediction, and biological database search. However, few comprehensive, visual editing tools for profile HMM are publicly available. Results We develop a visual editor for profile Hidden Markov Models (HMMEditor. HMMEditor can visualize the profile HMM architecture, transition probabilities, and emission probabilities. Moreover, it provides functions to edit and save HMM and parameters. Furthermore, HMMEditor allows users to align a sequence against the profile HMM and to visualize the corresponding Viterbi path. Conclusion HMMEditor provides a set of unique functions to visualize and edit a profile HMM. It is a useful tool for biological sequence analysis and modeling. Both HMMEditor software and web service are freely available.

  12. Absorption line profiles in a moving atmosphere - A single scattering linear perturbation theory

    Science.gov (United States)

    Hays, P. B.; Abreu, V. J.

    1989-01-01

    An integral equation is derived which linearly relates Doppler perturbations in the spectrum of atmospheric absorption features to the wind system which creates them. The perturbation theory is developed using a single scattering model, which is validated against a multiple scattering calculation. The nature and basic properties of the kernels in the integral equation are examined. It is concluded that the kernels are well behaved and that wind velocity profiles can be recovered using standard inversion techniques.

  13. Multi-omic profiling of MYCN-amplified neuroblastoma cell-lines

    Directory of Open Access Journals (Sweden)

    Erik Dassi

    2015-12-01

    Full Text Available Neuroblastoma is the most common pediatric cancer, arising from the neural crest cells of the sympathetic nervous system. Its most aggressive subtype, characterized by the amplification of the MYCN oncogene, has a dismal prognosis and no effective treatment is available. Understanding the alterations induced by the tumor on the various layers of gene expression is therefore important for a complete characterization of this neuroblastoma subtype and for the discovery of new therapeutic opportunities. Here we describe the profiling of 13 MYCN-amplified neuroblastoma cell lines at the genome (copy number, transcriptome, translatome and miRome levels (GEO series GSE56654, GSE56552 and GSE56655. We provide detailed experimental and data analysis procedures by means of which we derived the results described in [1].

  14. Intensity radial profiles of VUV line radiation near the solid target in a hot plasma

    Science.gov (United States)

    Piffl, V.; Weinzettl, V.; Burdakov, A.; Polosatkin, S. V.

    2004-03-01

    An investigation of hot plasma interaction with solid target is carried out at the CASTOR tokamak (IPP Prague) and the GOL-3 multi-mirror magnetic trap faccility (Budker Institute, Novosibirsk) [1], [5]. In both experiments, the Imaging Seya-Namioka Spectrometer based on a spherical dispersion grating has been upraded to monitor the radial profiles of the chord-integrated low- Z impurity line intensities in VUV spectral range. Such spatial resolved intensity monitoring in radial direction together with application of the radiation code simulation allows obtaining a radial distribution of ions of different ionization stages near the target immersed in edge plasma. The energy release from plasma to the target is order of 100 J/m2 in the CASTOR tokamak and 30 MJ/m2 int he GOL-3 magnetic open confinement system.

  15. Experimental study of the variation of spectrum line profiles with time (1962)

    International Nuclear Information System (INIS)

    Laval, G.; Pellat, R.

    1962-01-01

    This study relates to a device conceived by C. BRETON, M. CAPET and F. WAELBROECK and submitted at the Fifth International Conference on Ionization Phenomena in Gases (Munich 1961). To calibrate the device and to know its accurate possibilities, noise in photomultipliers had to be investigated. For weak light signals this investigation has shown that the Schottky effect explains this noise and that there is a strict relation between the time resolution and the accuracy of the results. These results are applied to measurements of Stark Effect broadening of the Dβ line emitted by the plasma of an electrode-less-gun. The densities calculated from the experimental profiles are in good agreement with the densities calculated from magnetic measurements. (authors) [fr

  16. Leptosphaeria maculans Alters Glucosinolate Profiles in Blackleg Disease–Resistant and -Susceptible Cabbage Lines

    Directory of Open Access Journals (Sweden)

    Arif Hasan Khan Robin

    2017-10-01

    Full Text Available Blackleg, a fungal disease caused by Leptosphaeria maculans, is one of the most devastating diseases of Brassica crops worldwide. Despite notable progress elucidating the roles of glucosinolates in pathogen defense, the complex interaction between B. oleracea (cabbage and L. maculans infection that leads to the selective induction of genes involved in glucosinolate production and subsequent modulation of glucosinolate profiles remains to be fully understood. The current study was designed to identify glucosinolate-biosynthesis genes induced by L. maculans and any associated alterations in glucosinolate profiles to explore their roles in blackleg resistance in 3-month-old cabbage plants. The defense responses of four cabbage lines, two resistant and two susceptible, were investigated using two L. maculans isolates, 03–02 s and 00–100 s. A simultaneous increase in the aliphatic glucosinolates glucoiberverin (GIV and glucoerucin (GER and the indolic glucosinolates glucobrassicin (GBS and neoglucobrassicin (NGBS was associated with complete resistance. An increase in either aliphatic (GIV or indolic (GBS and MGBS glucosinolates was associated with moderate resistance. Indolic glucobrassicin (GBS and neoglucobrassicin (NGBS were increased in both resistant and susceptible interactions. Pearson correlation showed positive association between GER content with GSL-OH (Bol033373 expression. Expressions of MYB34 (Bol007760, ST5a (Bol026200, and CYP81F2 (Bol026044 were positively correlated with the contents of both GBS and MGBS. Our results confirm that L. maculans infection induces glucosinolate-biosynthesis genes in cabbage, with concomitant changes in individual glucosinolate contents. In resistant lines, both aliphatic and indolic glucosinolates are associated with resistance, with aliphatic GIV and GER and indolic MGBS glucosinolates particularly important. The association between the genes, the corresponding glucosinolates, and plant resistance

  17. Small RNA Profiles of the Rice PTGMS Line Wuxiang S Reveal miRNAs Involved in Fertility Transition.

    Science.gov (United States)

    Zhang, Hongyuan; Hu, Jihong; Qian, Qian; Chen, Hao; Jin, Jing; Ding, Yi

    2016-01-01

    MicroRNAs (miRNAs) play key roles in the regulation of plant growth and developmental processes. In this study, RNA-seq was used to examine the expression profiles of miRNAs in a novel, photo-thermosensitive genic male sterile (PTGMS) rice line, Wuxiang S (WXS), during fertility transition. A total of 497 known miRNAs and 273 novel miRNAs were identified. In a differential expression analysis, 26 miRNAs exhibited significant differential expression between WXS (Sterile, S) and WXS (Fertile, F). Some of these miRNAs were validated by quantitative real-time PCR. Among these miRNAs, 11 showed decreased expression levels, and 15 showed increased expression levels in WXS (S) compared to WXS (F). Some of these miRNAs, such as osa-miR156a-j, osa-miR164d, and osa-miR528, were shown to be negatively correlated with their targets. These targets have previously been reported to be related to pollen development and male sterility, suggesting that these miRNAs may be involved in the regulation of pollen development in the rice PTGMS line WXS. Furthermore, miRNA-mediated editing events were also observed. In this study, a possible model for the control of signaling pathways during the process of fertility transition in the rice PTGMS line WXS by miRNAs was developed. These findings contribute to our understanding of the roles of miRNAs during anther development in PTGMS lines in rice.

  18. Metrology of variable-line-spacing x-ray gratings using the APS Long Trace Profiler

    Science.gov (United States)

    Sheung, Janet; Qian, Jun; Sullivan, Joseph; Thomasset, Muriel; Manton, Jonathan; Bean, Sunil; Takacs, Peter; Dvorak, Joseph; Assoufid, Lahsen

    2017-09-01

    As resolving power targets have increased with each generation of beamlines commissioned in synchrotron radiation facilities worldwide, diffraction gratings are quickly becoming crucial optical components for meeting performance targets. However, the metrology of variable-line-spacing (VLS) gratings for high resolution beamlines is not widespread; in particular, no metrology facility at any US DOE facility is currently equipped to fully characterize such gratings. To begin to address this issue, the Optics Group at the Advanced Photon Source at Argonne, in collaboration with SOLEIL and with support from Brookhaven National Laboratory (BNL), has developed an alternative beam path addition to the Long Trace Profiler (LTP) at Argonne's Advanced Photon Source. This significantly expands the functionality of the LTP not only to measure mirrors surface slope profile at normal incidence, but also to characterize the groove density of VLS diffraction gratings in the Littrow incidence up to 79°, which covers virtually all diffraction gratings used at synchrotrons in the first order. The LTP light source is a 20mW HeNe laser, which yields enough signal for diffraction measurements to be performed on low angle blazed gratings optimized for soft X-ray wavelengths. We will present the design of the beam path, technical requirements for the optomechanics, and our data analysis procedure. Finally, we discuss challenges still to be overcome and potential limitations with use of the LTP to perform metrology on diffraction gratings.

  19. A Distribution Line Model for Lightning Overvoltage Studies

    Science.gov (United States)

    Matsuura, Susumu; Noda, Taku; Asakawa, Akira; Yokoyama, Shigeru

    Recently, the focus of lightning protection measures for distribution lines has moved from a nearby lightning stroke to a direct lightning stroke. Studies of direct lightning stroke countermeasures are generally carried out by digital simulations using the EMTP (Electro-Magnetic Transients Program). Thus, components of a distribution line must be modeled appropriately in the EMTP for accurate simulations. The authors have previously clarified the surge response of a distribution line by pulse tests using a reduced-scale distribution line model. In this paper, first, the results of the pulse tests are simulated in the EMTP using a conventional model which represents a distribution pole by a single lossless distributed-parameter line model, and comparisons with the test results show that transient overvoltages generated at the insulators cannot accurately be reproduced by the conventional model. This indicates that a special treatment is required to represent the transient response of a distribution pole and wires. Then, this paper proposes new EMTP models of the pole and wires which can reproduce the transient overvoltages at the insulators. The parameter values of the proposed models can be determined based on a pulse test result.

  20. A mathematical model for camera calibration based on straight lines

    Directory of Open Access Journals (Sweden)

    Antonio M. G. Tommaselli

    2005-12-01

    Full Text Available In other to facilitate the automation of camera calibration process, a mathematical model using straight lines was developed, which is based on the equivalent planes mathematical model. Parameter estimation of the developed model is achieved by the Least Squares Method with Conditions and Observations. The same method of adjustment was used to implement camera calibration with bundles, which is based on points. Experiments using simulated and real data have shown that the developed model based on straight lines gives results comparable to the conventional method with points. Details concerning the mathematical development of the model and experiments with simulated and real data will be presented and the results with both methods of camera calibration, with straight lines and with points, will be compared.

  1. Initiating Events Modeling for On-Line Risk Monitoring Application

    International Nuclear Information System (INIS)

    Simic, Z.; Mikulicic, V.

    1998-01-01

    In order to make on-line risk monitoring application of Probabilistic Risk Assessment more complete and realistic, a special attention need to be dedicated to initiating events modeling. Two different issues are of special importance: one is how to model initiating events frequency according to current plant configuration (equipment alignment and out of service status) and operating condition (weather and various activities), and the second is how to preserve dependencies between initiating events model and rest of PRA model. First, the paper will discuss how initiating events can be treated in on-line risk monitoring application. Second, practical example of initiating events modeling in EPRI's Equipment Out of Service on-line monitoring tool will be presented. Gains from application and possible improvements will be discussed in conclusion. (author)

  2. Line-Shape Code Comparison through Modeling and Fitting of Experimental Spectra of the C ii 723-nm Line Emitted by the Ablation Cloud of a Carbon Pellet

    Directory of Open Access Journals (Sweden)

    Mohammed Koubiti

    2014-07-01

    Full Text Available Various codes of line-shape modeling are compared to each other through the profile of the C ii 723-nm line for typical plasma conditions encountered in the ablation clouds of carbon pellets, injected in magnetic fusion devices. Calculations were performed for a single electron density of 1017 cm−3 and two plasma temperatures (T = 2 and 4 eV. Ion and electron temperatures were assumed to be equal (Te = Ti = T. The magnetic field, B, was set equal to either to zero or 4 T. Comparisons between the line-shape modeling codes and two experimental spectra of the C ii 723-nm line, measured perpendicularly to the B-field in the Large Helical Device (LHD using linear polarizers, are also discussed.

  3. Gene expression profiles in asbestos-exposed epithelial and mesothelial lung cell lines

    Directory of Open Access Journals (Sweden)

    Kaski Samuel

    2007-03-01

    Full Text Available Abstract Background Asbestos has been shown to cause chromosomal damage and DNA aberrations. Exposure to asbestos causes many lung diseases e.g. asbestosis, malignant mesothelioma, and lung cancer, but the disease-related processes are still largely unknown. We exposed the human cell lines A549, Beas-2B and Met5A to crocidolite asbestos and determined time-dependent gene expression profiles by using Affymetrix arrays. The hybridization data was analyzed by using an algorithm specifically designed for clustering of short time series expression data. A canonical correlation analysis was applied to identify correlations between the cell lines, and a Gene Ontology analysis method for the identification of enriched, differentially expressed biological processes. Results We recognized a large number of previously known as well as new potential asbestos-associated genes and biological processes, and identified chromosomal regions enriched with genes potentially contributing to common responses to asbestos in these cell lines. These include genes such as the thioredoxin domain containing gene (TXNDC and the potential tumor suppressor, BCL2/adenovirus E1B 19kD-interacting protein gene (BNIP3L, GO-terms such as "positive regulation of I-kappaB kinase/NF-kappaB cascade" and "positive regulation of transcription, DNA-dependent", and chromosomal regions such as 2p22, 9p13, and 14q21. We present the complete data sets as Additional files. Conclusion This study identifies several interesting targets for further investigation in relation to asbestos-associated diseases.

  4. Non-Maxwellian Analysis of the Transition-region Line Profiles Observed by the Interface Region Imaging Spectrograph

    Energy Technology Data Exchange (ETDEWEB)

    Dudík, Jaroslav; Dzifčáková, Elena [Astronomical Institute of the Czech Academy of Sciences, Fričova 298, 251 65 Ondřejov (Czech Republic); Polito, Vanessa; Testa, Paola [Smithsonian Astrophysical Observatory, 60 Garden Street, MS 58, Cambridge, MA 02138 (United States); Zanna, Giulio Del, E-mail: dudik@asu.cas.cz [Department of Applied Mathematics and Theoretical Physics, CMS, University of Cambridge, Wilberforce Road, Cambridge CB3 0WA (United Kingdom)

    2017-06-10

    We investigate the nature of the spectral line profiles for transition-region (TR) ions observed with the Interface Region Imaging Spectrograph (IRIS) . In this context, we analyzed an active-region observation performed by IRIS in its 1400 Å spectral window. The TR lines are found to exhibit significant wings in their spectral profiles, which can be well fitted with a non-Maxwellian κ distribution. The fit with a κ distribution can perform better than a double-Gaussian fit, especially for the strongest line, Si iv 1402.8 Å. Typical values of κ found are about 2, occurring in a majority of spatial pixels where the TR lines are symmetric, i.e., the fit can be performed. Furthermore, all five spectral lines studied (from Si iv, O iv, and S iv) appear to have the same full-width at half-maximum irrespective of whether the line is an allowed or an intercombination transition. A similar value of κ is obtained for the electron distribution by the fitting of the line intensities relative to Si iv 1402.8 Å, if photospheric abundances are assumed. The κ distributions, however, do not remove the presence of non-thermal broadening. Instead, they actually increase the non-thermal width. This is because, for κ distributions, TR ions are formed at lower temperatures. The large observed non-thermal width lowers the opacity of the Si iv line sufficiently enough for this line to become optically thin.

  5. Nebular Continuum and Line Emission in Stellar Population Synthesis Models

    Science.gov (United States)

    Byler, Nell; Dalcanton, Julianne J.; Conroy, Charlie; Johnson, Benjamin D.

    2017-05-01

    Accounting for nebular emission when modeling galaxy spectral energy distributions (SEDs) is important, as both line and continuum emissions can contribute significantly to the total observed flux. In this work, we present a new nebular emission model integrated within the Flexible Stellar Population Synthesis code that computes the line and continuum emission for complex stellar populations using the photoionization code Cloudy. The self-consistent coupling of the nebular emission to the matched ionizing spectrum produces emission line intensities that correctly scale with the stellar population as a function of age and metallicity. This more complete model of galaxy SEDs will improve estimates of global gas properties derived with diagnostic diagrams, star formation rates based on Hα, and physical properties derived from broadband photometry. Our models agree well with results from other photoionization models and are able to reproduce observed emission from H II regions and star-forming galaxies. Our models show improved agreement with the observed H II regions in the Ne III/O II plane and show satisfactory agreement with He II emission from z = 2 galaxies, when including rotating stellar models. Models including post-asymptotic giant branch stars are able to reproduce line ratios consistent with low-ionization emission regions. The models are integrated into current versions of FSPS and include self-consistent nebular emission predictions for MIST and Padova+Geneva evolutionary tracks.

  6. Multikanban model for disassembly line with demand fluctuation

    Science.gov (United States)

    Udomsawat, Gun; Gupta, Surendra M.; Al-Turki, Yousef A. Y.

    2004-02-01

    In recent years, the continuous growth in consumer waste and dwindling natural resources has seriously threatened the environment. Realizing this, several countries have passed regulations that force manufacturers not only to manufacture environmentally conscious products, but also to take back their used products from consumers so that the components and materials recovered from the products may be reused and/or recycled. Disassembly plays an important role in product recovery. A disassembly line is perhaps the most suitable setting for disassembly of products in large quantities. Because a disassembly line has a tendency to generate excessive inventory, employing a kanban system can reduce the inventory level and let the system run more efficiently. A disassembly line is quite different from an assembly line. For example, not only can the demand arrive at the last station, it can also arrive at any of the other stations in the system. The demand for a component on the disassembly line could fluctuate widely. In fact, there are many other complicating matters that need to be considered to implement the concept of kanbans in such an environment. In this paper, we discuss the complications that are unique to a disassembly line. We discuss the complications in utilizing the conventional production control mechanisms in a disassembly line setting. We then show how to overcome them by implementing kanbans in a disassembly line setting with demand fluctuation and introduce the concept of multi-kanban mechanism. We demonstrate its effectiveness using a simulation model. An example is presented to illustrate the concept.

  7. Transmission Delay Modeling of Packet Communication over Digital Subscriber Line

    Directory of Open Access Journals (Sweden)

    Jiri Vodrazka

    2013-01-01

    Full Text Available Certain multimedia and voice services, such as VoIP, IPTV, etc., are significantly delay sensitive and their performance is influenced by the overall transmission delay and its variance. One of the most common solutions used in access networks are xDSL lines, especially ADSL2+ or VDSL2. Although these subscriber lines also use packet communication, there are several differences and mechanisms, which influence their resulting delay. Their delay characteristics are also dependent on the individual settings of each xDSL provider, therefore we decided to investigate this area for typical commercially available lines in Czech Republic. Based on the measured values and experiments with real ADSL2+ lines we also developed a potential modeling method, which is presented in this article as well. The parameters for packet jitter based on the generalized Pareto distribution were modeled.

  8. Constructing Poverty Lines in Croatia Using Kakwani’s Model

    Directory of Open Access Journals (Sweden)

    Marinko Škare

    2017-06-01

    Full Text Available This paper presents a new model for defining the poverty line as a possible candidate for the construction of a new official poverty line in Croatia. The model, based on Kakwani’s (2010 approach (nutrition-based anchor, uses consumer theory as the basis for defining food and non-food poverty lines. In Croatia, various alternative poverty indicators have been developed to define the official poverty line. To ensure international comparability and consistency, the poverty threshold expressed in local currency by applying the exchange rate of currencies’ purchasing power (PPP is expressed in international dollars. It is important to ensure implementation of redistributive policies, maximization of market efficiency, and increased social justice. All this policy goals and instruments heavily depend on efficient and precise poverty measurement methods.

  9. Modeling of the temperature field of the casting ladle lining

    Science.gov (United States)

    Zabolotsky, A. V.

    2011-03-01

    We propose a method for calculating the temperature field of the casting ladle lining by a modified relaxation method. Given such initial data as the metal temperature in the ladle, the ambient temperature, and the lining structure, this method permits calculating the stationary temperature fields both inside the lining and on the surface of the ladle jacket. The model was tested by comparing experimentally measured temperature values on the surface of the ladle jacket with calculated temperatures. A satisfactory agreement between calculated and experimental temperature values of the ladle surface has been obtained.

  10. Analytical Model for High Impedance Fault Analysis in Transmission Lines

    Directory of Open Access Journals (Sweden)

    S. Maximov

    2014-01-01

    Full Text Available A high impedance fault (HIF normally occurs when an overhead power line physically breaks and falls to the ground. Such faults are difficult to detect because they often draw small currents which cannot be detected by conventional overcurrent protection. Furthermore, an electric arc accompanies HIFs, resulting in fire hazard, damage to electrical devices, and risk with human life. This paper presents an analytical model to analyze the interaction between the electric arc associated to HIFs and a transmission line. A joint analytical solution to the wave equation for a transmission line and a nonlinear equation for the arc model is presented. The analytical model is validated by means of comparisons between measured and calculated results. Several cases of study are presented which support the foundation and accuracy of the proposed model.

  11. Bayesian modeling of JET Li-BES for edge electron density profiles using Gaussian processes

    Science.gov (United States)

    Kwak, Sehyun; Svensson, Jakob; Brix, Mathias; Ghim, Young-Chul; JET Contributors Collaboration

    2015-11-01

    A Bayesian model for the JET lithium beam emission spectroscopy (Li-BES) system has been developed to infer edge electron density profiles. The 26 spatial channels measure emission profiles with ~15 ms temporal resolution and ~1 cm spatial resolution. The lithium I (2p-2s) line radiation in an emission spectrum is calculated using a multi-state model, which expresses collisions between the neutral lithium beam atoms and the plasma particles as a set of differential equations. The emission spectrum is described in the model including photon and electronic noise, spectral line shapes, interference filter curves, and relative calibrations. This spectral modeling gets rid of the need of separate background measurements for calculating the intensity of the line radiation. Gaussian processes are applied to model both emission spectrum and edge electron density profile, and the electron temperature to calculate all the rate coefficients is obtained from the JET high resolution Thomson scattering (HRTS) system. The posterior distributions of the edge electron density profile are explored via the numerical technique and the Markov chain Monte Carlo (MCMC) samplings. See the Appendix of F. Romanelli et al., Proceedings of the 25th IAEA Fusion Energy Conference 2014, Saint Petersburg, Russia.

  12. Modelling of the urban wind profile

    DEFF Research Database (Denmark)

    Gryning, Sven-Erik; Batchvarova, Ekaterina

    2008-01-01

    Analysis of meteorological measurements from tall masts in rural and urban areas show that the height of the boundary layer influences the wind profile even in the lowest hundreds of meters. A parameterization of the wind profile for the entire boundary layer is formulated with emphasis...... on the lowest 200-300 m and presented here. Results are shown from applying the parameterization of the wind profile on independent measurements from an urban experimental campaign that was carried out in Sofia, Bulgaria in 2003....

  13. Face-to-Face vs On-line: An analysis of Profile, Learning, Performance and Satisfaction among Post Graduate Students

    OpenAIRE

    Ortega-Maldonado, Alberto; Llorens, Susana; Acosta Antognoni, Hedy; Coo Calcagni, Cristian

    2017-01-01

    The aim of this study is to explore the differences between face-to-face and on-line students in a post graduate education program. The variables considered are Post Graduate Student's profile, competences and learning outcomes, academic performance and satisfaction. The sample was composed by 47 students (64% face-to-face). Analysis of variance (ANOVA) and student's t utilizing SPPS Statistics 22.0 were performed. Results showed differences in all variables: (i) Regarding student profile, fa...

  14. IDENTIFIKASI PROFIL DASAR LAUT MENGGUNAKAN INSTRUMEN SIDE SCAN SONAR DENGAN METODE BEAM PATTERN DISCRETE-EQUI-SPACED UNSHADED LINE ARRAY

    Directory of Open Access Journals (Sweden)

    Muhammad Zainuddin Lubis

    2017-05-01

    Full Text Available Laut Punggur merupakan laut yang terletak di Batam, Kepulauan Riau yang mempunyai beragam habitat objek,dan bentuk struktur bawah laut yang memiliki dinamika laut yang sangat tinggi. Side scan sonar (SSS merupakan instrumen pengembangan sistem sonar yang mampu menunjukkan dalam gambar dua dimensional permukaan dasar laut dengan kondisi kontur, topografi, dan target secara bersamaan. Metode Beam Pattern Discrete-Equi-Spaced Unshaded Line Array digunakan untuk menghitung beam pattern dua dimensi yang tergantung pada sudut dari gelombang suara yang masuk dari sumbu array yang diterima tergantung pada sudut di mana sinar suara pada array. Penelitian ini dilakukan pada Desember 2016 di laut Punggur,Batam, Kepulauan Riau-Indonesia, dengan koordinat 104 ° 08,7102 E dan 1° 03,2448 N sampai 1 ° 03.3977 N dan 104 ° 08,8133 E, menggunakan instrumen Side Scan Sonar C-Max CM2 Tow fish dengan frekuensi 325 kHz. Hasil yang diperoleh dari perekaman terdapat 7 target, dan Beam pattern dari metode Beam Discrete-Equi-Spaced Unshaded Line Array target 4 memiliki nilai tertinggi pada directivity Pattern yaitu 21.08 dB. Hasil model beam pattern ini memiliki nilai pusat pada incidence angle (o terhadap Directivity pattern (dB tidak berada di nilai 0 ataupun pada pusat beam pattern yang dihasilkan pada target 6 dengan nilai incident angle -1.5 o dan 1.5o mengalami penurunan hingga -40 dB. Karakteristik sedimen dasar perairan di laut punggur ditemukan lebih banyak pasir. Hasil metode Beam Discrete-Equi-Spaced Unshaded Line Array ditemukan bangkai kapal tenggelam.Kata Kunci: Side Scan Sonar, Beam Pattern Discrete-Equi-Spaced Unshaded Line Array, Incidence angle, Directivity pattern IDENTIFICATION OF SEABED PROFILE USING SIDE SCAN SONAR INSTRUMENT WITH PATTERN DISCRETE-EQUI-SPACED UNSHADED LINE ARRAY METHODRiau Islands is an island that has a variety of habitat objects, and forms of submarine structures that have a very high ocean dynamics, Punggur Sea is the sea

  15. Model for estimating of population abundance using line transect sampling

    Science.gov (United States)

    Abdulraqeb Abdullah Saeed, Gamil; Muhammad, Noryanti; Zun Liang, Chuan; Yusoff, Wan Nur Syahidah Wan; Zuki Salleh, Mohd

    2017-09-01

    Today, many studies use the nonparametric methods for estimating objects abundance, for the simplicity, the parametric methods are widely used by biometricians. This paper is designed to present the proposed model for estimating of population abundance using line transect technique. The proposed model is appealing because it is strictly monotonically decreasing with perpendicular distance and it satisfies the shoulder conditions. The statistical properties and inference of the proposed model are discussed. In the presented detection function, theoretically, the proposed model is satisfied the line transect assumption, that leads us to study the performance of this model. We use this model as a reference for the future research of density estimation. In this paper we also study the assumption of the detection function and introduce the corresponding model in order to apply the simulation in future work.

  16. Integrative fitting of absorption line profiles with high accuracy, robustness, and speed

    Science.gov (United States)

    Skrotzki, Julian; Habig, Jan Christoph; Ebert, Volker

    2014-08-01

    The principle of the integrative evaluation of absorption line profiles relies on the numeric integration of absorption line signals to retrieve absorber concentrations, e.g., of trace gases. Thus, it is a fast and robust technique. However, previous implementations of the integrative evaluation principle showed shortcomings in terms of accuracy and the lack of a fit quality indicator. This has motivated the development of an advanced integrative (AI) fitting algorithm. The AI fitting algorithm retains the advantages of previous integrative implementations—robustness and speed—and is able to achieve high accuracy by introduction of a novel iterative fitting process. A comparison of the AI fitting algorithm with the widely used Levenberg-Marquardt (LM) fitting algorithm indicates that the AI algorithm has advantages in terms of robustness due to its independence from appropriately chosen start values for the initialization of the fitting process. In addition, the AI fitting algorithm shows speed advantages typically resulting in a factor of three to four shorter computational times on a standard personal computer. The LM algorithm on the other hand retains advantages in terms of a much higher flexibility, as the AI fitting algorithm is restricted to the evaluation of single absorption lines with precomputed line width. Comparing both fitting algorithms for the specific application of in situ laser hygrometry at 1,370 nm using direct tunable diode laser absorption spectroscopy (TDLAS) suggests that the accuracy of the AI algorithm is equivalent to that of the LM algorithm. For example, a signal-to-noise ratio of 80 and better typically yields a deviation of cloud chamber aerosol interactions and dynamics in the atmosphere (AIDA)—a unique large-scale facility to study atmospheric processes. The robustness of the AI fitting algorithm has been validated for typical AIDA conditions encompassing strong transmission fluctuations during the formation of droplet or ice

  17. a High Resolution Spectroscopic Study of Absorption Line Profiles in the A-Band of Molecular Oxygen

    Science.gov (United States)

    Ritter, Kenneth James

    A study has been made of absorption line profiles in the A-band of molecular oxygen at 13120 cm('-1). High resolution spectra were obtained using a narrow linewidth tunable dye laser in conjunction with a multi-pass optical absorption cell, a photo-acoustic cell, and a variable temperature photo-acoustic cell. Line parameters were determined using a least-squares fitting routine which numerically adjusted parameters of certain standard line profile functions to obtain the best fit with the observed profiles. The standard line profiles used were the Voigt function, two Dicke-narrowed profiles, and a speed dependent Voigt profile. Clear deviations are shown between the observed and simple Voigt profiles, while the other three profiles were found to fit the observed profiles well. Line strengths, pressure broadening coefficients, and pressure induced frequency shifts were also determined from the measured profiles. Line strengths obtained from the absorption measurements are compared with expressions given by Childs and Mecke (1931), Schlapp (1932;1937), Tilford et al. (1965) and Watson (1968). The expressions of Tilford et al. (1965) and Watson (1968) are shown to be in closest agreement with the measurements. Self-broadening coefficients are compared with previous measurements made by other investigators as well as with theoretical calculations made using the semi-classical method of Smith and Giraud (1979). Pressure induced frequency shifts were determined by taking simultaneous spectra of two cells at different pressures. The pressure induced frequency shifts and broadening coefficients were measured in pure oxygen as a function of temperature ( -20(DEGREES)C to 100(DEGREES)C), as well as in air and the broadeners He, Ne, Ar, Kr, and Xe at ambient temperature. The measured gas broadening coefficients are shown to be in close agreement with values calculated using the method of Smith and Giraud (1979). It is also shown that the general behavior observed for the

  18. On the line-shape analysis of Compton profiles and its application to neutron scattering

    International Nuclear Information System (INIS)

    Romanelli, G.; Krzystyniak, M.

    2016-01-01

    Analytical properties of Compton profiles are used in order to simplify the analysis of neutron Compton scattering experiments. In particular, the possibility to fit the difference of Compton profiles is discussed as a way to greatly decrease the level of complexity of the data treatment, making the analysis easier, faster and more robust. In the context of the novel method proposed, two mathematical models describing the shapes of differenced Compton profiles are discussed: the simple Gaussian approximation for harmonic and isotropic local potential, and an analytical Gauss–Hermite expansion for an anharmonic or anisotropic potential. The method is applied to data collected by VESUVIO spectrometer at ISIS neutron and muon pulsed source (UK) on Copper and Aluminium samples at ambient and low temperatures. - Highlights: • A new method to analyse neutron Compton scattering data is presented. • The method allows many corrections on the experimental data to be avoided. • The number of needed fitting parameters is drastically reduced using the new method. • Mass-selective analysis is facilitated with parametric studies benefiting the most. • Observables linked to anisotropic momentum distribution are obtained analytically.

  19. Rigorous theoretical derivation of lumped models to transmission line systems

    International Nuclear Information System (INIS)

    Zhao Jixiang

    2012-01-01

    By virtue of the negative electric parameter concept, i.e. negative lumped resistance, inductance, conductance and capacitance (N-RLGC), the lumped equivalent models of transmission line systems, including the circuit model, two-port π-network and T-network, are given. We start from the N-segment-ladder-like equivalent networks composed distributed parameters, and achieve the input impedance in the form of a continued fraction. Utilizing the continued fraction theory, the expressions of input impedance are obtained under three kinds of extreme cases, i.e. the load impedances are equal to zero, infinity and characteristic impedance, respectively. When the number of segment N is limited to infinity, they are transformed to lumped elements. Comparison between the distributed model and lumped model of transmission lines, the expression of tanh γd, which is the key term in the transmission line equations, are obtained by RLGC, furthermore, according to input admittance, admittance matrix and ABCD matrix of transmission lines, the lumped equivalent circuit models, π-networks and T-networks have been given. The models are verified in the frequency and time domain, respectively, showing that the models are accurate and efficient. (semiconductor integrated circuits)

  20. Some Results On The Modelling Of TSS Manufacturing Lines

    Directory of Open Access Journals (Sweden)

    Viorel MÎNZU

    2000-12-01

    Full Text Available This paper deals with the modelling of a particular class of manufacturing lines, governed by a decentralised control strategy so that they balance themselves. Such lines are known as “bucket brigades” and also as “TSS lines”, after their first implementation, at Toyota, in the 70’s. A first study of their behaviour was based upon modelling as stochastic dynamic systems, which emphasised, in the frame of the so-called “Normative Model”, a sufficient condition for self-balancing, that means for autonomous functioning at a steady production rate (stationary behaviour. Under some particular conditions, a simulation analysis of TSS lines could be made on non-linear block diagrams, showing that the state trajectories are piecewise continuous in between occurrences of certain discrete events, which determine their discontinuity. TSS lines may therefore be modelled as hybrid dynamic systems, more specific, with autonomous switching and autonomous impulses (jumps. A stability analysis of such manufacturing lines is allowed by modelling them as hybrid dynamic systems with discontinuous motions.

  1. Aspect-Oriented Model-Driven Software Product Line Engineering

    Science.gov (United States)

    Groher, Iris; Voelter, Markus

    Software product line engineering aims to reduce development time, effort, cost, and complexity by taking advantage of the commonality within a portfolio of similar products. The effectiveness of a software product line approach directly depends on how well feature variability within the portfolio is implemented and managed throughout the development lifecycle, from early analysis through maintenance and evolution. This article presents an approach that facilitates variability implementation, management, and tracing by integrating model-driven and aspect-oriented software development. Features are separated in models and composed of aspect-oriented composition techniques on model level. Model transformations support the transition from problem to solution space models. Aspect-oriented techniques enable the explicit expression and modularization of variability on model, template, and code level. The presented concepts are illustrated with a case study of a home automation system.

  2. Measurement of the electron temperature profiles in the F-1 cold gas blanket experiment by hydrogen line-spectroscopy

    International Nuclear Information System (INIS)

    Kuthy, A.

    1981-01-01

    Radial profiles of the electron temperature in the F-1 device were determined by measurements of the hydrogen Balmer β-line intensity. The F-1 device produces plasmas in the parameter range of cold gas blankets. The measured temperatures were in agreement with earlier theoretical estimates. The temperature amplitudes and profile shapes were strongly dependent on the power input. The neutral penetration length was dominated by temperature profile effects. The temperature of the ionization zone was essentially constant at 2.5 eV independent of the peak temperature. (orig.)

  3. Integrated on-line accelerator modeling at CEBAF

    International Nuclear Information System (INIS)

    Bowling, B.A.; Shoaee, H.; Van Zeijts, J.; Witherspoon, S.; Watson, W.

    1995-01-01

    An on-line accelerator modeling facility is currently under development at CEBAF. The model server, which is integrated with the EPICS control system, provides coupled and 2nd-order matrices for the entire accelerator, and forms the foundation for automated model- based control and diagnostic applications. Four types of machine models are provided, including design, golden or certified, live, and scratch or simulated model. Provisions are also made for the use of multiple lattice modeling programs such as DIMAD, PARMELA, and TLIE. Design and implementation details are discussed. 2 refs., 4 figs

  4. Monte Carlo simulations of the detailed iron absorption line profiles from thermal winds in X-ray binaries

    Science.gov (United States)

    Tomaru, Ryota; Done, Chris; Odaka, Hirokazu; Watanabe, Shin; Takahashi, Tadayuki

    2018-05-01

    Blueshifted absorption lines from highly ionized iron are seen in some high inclination X-ray binary systems, indicating the presence of an equatorial disc wind. This launch mechanism is under debate, but thermal driving should be ubiquitous. X-ray irradiation from the central source heats disc surface, forming a wind from the outer disc where the local escape velocity is lower than the sound speed. The mass-loss rate from each part of the disc is determined by the luminosity and spectral shape of the central source. We use these together with an assumed density and velocity structure of the wind to predict the column density and ionization state, then combine this with a Monte Carlo radiation transfer to predict the detailed shape of the absorption (and emission) line profiles. We test this on the persistent wind seen in the bright neutron star binary GX 13+1, with luminosity L/LEdd ˜ 0.5. We approximately include the effect of radiation pressure because of high luminosity, and compute line features. We compare these to the highest resolution data, the Chandra third-order grating spectra, which we show here for the first time. This is the first physical model for the wind in this system, and it succeeds in reproducing many of the features seen in the data, showing that the wind in GX13+1 is most likely a thermal-radiation driven wind. This approach, combined with better streamline structures derived from full radiation hydrodynamic simulations, will allow future calorimeter data to explore the detail wind structure.

  5. Small RNA profiles of the rice PTGMS line Wuxiang S reveal miRNAs involved in the fertility transition

    Directory of Open Access Journals (Sweden)

    Yi eDing

    2016-04-01

    Full Text Available MicroRNAs (miRNAs play key roles in the regulation of plant growth and developmental processes. In this study, the RNA-seq technique was employed to examine the expression profiles of miRNAs in a novel rice photo-thermo sensitive generic male sterile (PTGMS line Wuxiang S (WXS during the fertility transition. A total of 497 known miRNAs and 273 novel miRNAs were identified. By means of the differentially expression analysis, a total of 26 miRNAs were discovered to be significant difference expression between WXS (Sterility, S and WXS (Fertility, F. And some of these miRNAs were validated by quantitative real-time PCR. Among these miRNAs, eleven of which were decreased, and fifteen of which were increased in the expression levels of genes when WXS (S compared with WXS (F, respectively. Some of these miRNAs such as osa-miR156a-j, osa-miR164d and osa-miR528, were showed to be negatively correlated with their targets. These targets have previously been reported to be related with pollen development and male sterility, suggesting that these miRNAs might be involved in the regulation of pollen development in the rice PTGMS line WXS. Furthermore, the miRNAs editing events were also observed. A possible control model of miRNAs and signaling pathway was proposed in the process of fertility transition of rice PTGMS line WXS in this study. These findings contribute to our understanding of the roles of miRNAs during anther development of PTGMS occurrence in rice.

  6. Monte-Carlo simulations of the detailed iron absorption line profiles from thermal winds in X-ray binaries

    Science.gov (United States)

    Tomaru, Ryota; Done, Chris; Odaka, Hirokazu; Watanabe, Shin; Takahashi, Tadayuki

    2018-02-01

    Blue-shifted absorption lines from highly ionised iron are seen in some high inclination X-ray binary systems, indicating the presence of an equatorial disc wind. This launch mechanism is under debate, but thermal driving should be ubiquitous. X-ray irradiation from the central source heats disc surface, forming a wind from the outer disc where the local escape velocity is lower than the sound speed. The mass loss rate from each part of the disc is determined by the luminosity and spectral shape of the central source. We use these together with an assumed density and velocity structure of the wind to predict the column density and ionisation state, then combine this with a Monte-Carlo radiation transfer to predict the detailed shape of the absorption (and emission) line profiles. We test this on the persistent wind seen in the bright neutron star binary GX 13+1, with luminosity L/LEdd ˜ 0.5. We approximately include the effect of radiation pressure because of high luminosity, and compute line features. We compare these to the highest resolution data, the Chandra third order grating spectra, which we show here for the first time. This is the first physical model for the wind in this system, and it succeeds in reproducing many of the features seen in the data, showing that the wind in GX13+1 is most likely a thermal-radiation driven wind. This approach, combined with better streamline structures derived from full radiation hydrodynamic simulations, will allow future calorimeter data to explore the detail wind structure.

  7. A Transmission Line Model for the Spherical Beltrami Problem

    Science.gov (United States)

    Papageorgiou, C. D.; Raptis, T. E.

    We extend a previously introduced model for finding eigenvalues and eigenfunctions of PDEs with a certain natural symmetry set based on an analysis of an equivalent transmission line circuit. This was previously applied with success in the case of optical fibers [8], [9] as well as in the case of a linear Schroedinger equation [10], [11] and recently in the case of spherical symmetry (Ball Lightning) [12]. We explore the interpretation of eigenvalues as resonances of the corresponding transmission line model. We use the generic Beltrami problem of non-constant eigen-vorticity in spherical coordinates as a test bed and we locate the bound states and the eigen-vorticity functions.

  8. Theoretical models of magnetic field line merging. I

    International Nuclear Information System (INIS)

    Vasyliunas, V.M.

    1975-01-01

    Models of magnetic field line merging that consider processes in a limited region around the magnetic X line, within which the external magnetic fields are roughly uniform and antiparallel, are reviewed. Part I describes the concept of magnetic merging and then considers the models based on a hydromagnetic approach. The models developed by Sweet and Parker, by Petschek, and by Sonnerup and Yeh and Axford are shown to be fundamentally consistent, representing different aspects of the same problem. The model of Sweet and Parker describes the small region around the neutral line where magnetic field diffusion is the dominant process. The inclusion of inertial as well as finite resistivity effects allows an extension of their model to collisionless plasmas. Petschek's model represents a system with a boundary condition of uniform field at the sides; it has been extended and formulated in a mathematically precise manner. The nonsingular model of Sonnerup and of Yeh and Axford has special boundary conditions at the sides producing localized slow mode MHD expansion fans in the external flow; the singular models and the compressible similarity models are physically unrealizable. The maximum merging rate corresponds to flow into the diffusion region of the local Alfven speed, which, however, can be made arbitrarily large by slow mode MHD expansion if suitable boundary condi []ions are present. (auth)

  9. Understanding Mammalian Germ Line Development with In Vitro Models.

    Science.gov (United States)

    Martínez-Arroyo, Ana M; Míguez-Forján, Jose M; Remohí, Jose; Pellicer, Antonio; Medrano, Jose V

    2015-09-15

    Germ line development is crucial in organisms with sexual reproduction to complete their life cycle. In mammals, knowledge about germ line development is based mainly on the mouse model, in which genetic and epigenetic events are well described. However, little is known about how germ line development is orchestrated in humans, especially in the earliest stages. New findings derived from human in vitro models to obtain germ cells can shed light on these questions. This comprehensive review summarizes the current knowledge about mammalian germ line development, emphasizing the state of the art obtained from in vitro models for germ cell-like cell derivation. Current knowledge of the pluripotency cycle and germ cell specification has allowed different in vitro strategies to obtain germ cells with proven functionality in mouse models. Several reports during the last 10 years show that in vitro germ cell derivation with proven functionality to generate a healthy offspring is possible in mice. However, differences in the embryo development and pluripotency potential between human and mouse make it difficult to extrapolate these results. Further efforts on both human and mouse in vitro models to obtain germ cells from pluripotent stem cells may help to elucidate how human physiological events take place; therefore, therapeutic strategies can also be considered.

  10. Genome wide profiling of human embryonic stem cells (hESCs, their derivatives and embryonal carcinoma cells to develop base profiles of U.S. Federal government approved hESC lines

    Directory of Open Access Journals (Sweden)

    Baker Shawn C

    2006-05-01

    Full Text Available Abstract Background In order to compare the gene expression profiles of human embryonic stem cell (hESC lines and their differentiated progeny and to monitor feeder contaminations, we have examined gene expression in seven hESC lines and human fibroblast feeder cells using Illumina® bead arrays that contain probes for 24,131 transcript probes. Results A total of 48 different samples (including duplicates grown in multiple laboratories under different conditions were analyzed and pairwise comparisons were performed in all groups. Hierarchical clustering showed that blinded duplicates were correctly identified as the closest related samples. hESC lines clustered together irrespective of the laboratory in which they were maintained. hESCs could be readily distinguished from embryoid bodies (EB differentiated from them and the karyotypically abnormal hESC line BG01V. The embryonal carcinoma (EC line NTera2 is a useful model for evaluating characteristics of hESCs. Expression of subsets of individual genes was validated by comparing with published databases, MPSS (Massively Parallel Signature Sequencing libraries, and parallel analysis by microarray and RT-PCR. Conclusion we show that Illumina's bead array platform is a reliable, reproducible and robust method for developing base global profiles of cells and identifying similarities and differences in large number of samples.

  11. Genome wide profiling of human embryonic stem cells (hESCs), their derivatives and embryonal carcinoma cells to develop base profiles of U.S. Federal government approved hESC lines.

    Science.gov (United States)

    Liu, Ying; Shin, Soojung; Zeng, Xianmin; Zhan, Ming; Gonzalez, Rodolfo; Mueller, Franz-Josef; Schwartz, Catherine M; Xue, Haipeng; Li, Huai; Baker, Shawn C; Chudin, Eugene; Barker, David L; McDaniel, Timothy K; Oeser, Steffen; Loring, Jeanne F; Mattson, Mark P; Rao, Mahendra S

    2006-05-03

    In order to compare the gene expression profiles of human embryonic stem cell (hESC) lines and their differentiated progeny and to monitor feeder contaminations, we have examined gene expression in seven hESC lines and human fibroblast feeder cells using Illumina bead arrays that contain probes for 24,131 transcript probes. A total of 48 different samples (including duplicates) grown in multiple laboratories under different conditions were analyzed and pairwise comparisons were performed in all groups. Hierarchical clustering showed that blinded duplicates were correctly identified as the closest related samples. hESC lines clustered together irrespective of the laboratory in which they were maintained. hESCs could be readily distinguished from embryoid bodies (EB) differentiated from them and the karyotypically abnormal hESC line BG01V. The embryonal carcinoma (EC) line NTera2 is a useful model for evaluating characteristics of hESCs. Expression of subsets of individual genes was validated by comparing with published databases, MPSS (Massively Parallel Signature Sequencing) libraries, and parallel analysis by microarray and RT-PCR. we show that Illumina's bead array platform is a reliable, reproducible and robust method for developing base global profiles of cells and identifying similarities and differences in large number of samples.

  12. Changes in protein expression profiles between a low phytic acid rice ( Oryza sativa L. Ssp. japonica) line and its parental line: a proteomic and bioinformatic approach.

    Science.gov (United States)

    Emami, Kaveh; Morris, Nicholas J; Cockell, Simon J; Golebiowska, Gabriela; Shu, Qing-Yao; Gatehouse, Angharad M R

    2010-06-09

    The seed proteome of a low phytic acid (lpa) rice line (Os-lpa-XS110-1), developed as a novel food source, was compared to that of its parental line, Xiushui 110 (XS-110). Analysis by surfaced enhanced laser desorption ionization-time-of-flight mass spectrometry (SELDI-TOF MS) and two-dimensional gel electrophoresis (2-DE) allowed the detection of a potential low molecular weight biomarker and identification of 23 differentially expressed proteins that include stress-related proteins, storage proteins, and potential allergens. Bioinformatic analyses revealed that triose phosphate isomerase (TPI) and fructose bisphosphatealdolase (FBA), two major differentially expressed proteins, are involved in myo-inositol metabolism. Accumulation of globulin was also significantly decreased in the lpa line. This study demonstrates the potential of proteomic and bioinformatic profiling techniques for safety assessment of novel foods. Furthermore, these techniques provide powerful tools for studying functional genomics due to the possibility of identifying genes related to the mutated traits.

  13. New developments in velocity profile measurement and pipe wall wear monitoring for hydrotransport lines

    Energy Technology Data Exchange (ETDEWEB)

    O' Keefe, C.; Maron, R.J. [CiDRA Minerals Processing Inc., Wallingford, CT (United States); Fernald, M.; Bailey, T. [CiDRA Corporate Services, Wallingford, CT (United States); Van der Spek, A. [ZDOOR, Rotterdam (Netherlands)

    2009-07-01

    Sonar array flow measurement technology was initially developed a decade ago with the goal of non-invasively measuring multi-phase flows in the petroleum industry. The same technology was later adapted to the mineral processing industry where it has been rapidly adopted. The specific sensor technology, based on piezoelectric film sensors, provides unique measurement capabilities, including the ability to non-invasively measure localized strains in the walls of pipes. Combined with sonar array processing algorithms, an axial array of such sensors can measure flow velocities within a pipe. The sensors are useful for monitoring and managing slurry flow in horizontal pipes since they provide real-time velocity profiles measurement. The information is useful in determining the approach and onset of solid deposition on the bottom of the pipe. The sensors also provide a non-invasive measurement of pipe wear on slurry lines. Such measurements are currently made by hand-held portable ultrasonic thickness gages. The shortfalls associated with this manual method are overcome with a set of permanently or semi-permanently installed transducers clamped onto the outside of the pipe, where sensors measure the thickness of the pipe. This system and approach results in better repeatability and accuracy compared to manual methods. It also decreases inspection labor costs and pipe access requirements. It was concluded that the potential impact on personnel safety and environmental savings will be significant. 3 refs., 20 figs.

  14. Face-to-Face vs On-Line: An Analysis of Profile, Learning, Performance and Satisfaction among Post Graduate Students

    Science.gov (United States)

    Ortega-Maldonado, Alberto; Llorens, Susana; Acosta, Hedy; Coo, Cristián

    2017-01-01

    The aim of this study is to explore the differences between face-to-face and on-line students in a post graduate education program. The variables considered are Post Graduate Student's profile, competences and learning outcomes, academic performance and satisfaction. The sample was composed by 47 students (64% face-to-face). Analysis of variance…

  15. Modeling and clustering users with evolving profiles in usage streams

    KAUST Repository

    Zhang, Chongsheng

    2012-09-01

    Today, there is an increasing need of data stream mining technology to discover important patterns on the fly. Existing data stream models and algorithms commonly assume that users\\' records or profiles in data streams will not be updated or revised once they arrive. Nevertheless, in various applications such asWeb usage, the records/profiles of the users can evolve along time. This kind of streaming data evolves in two forms, the streaming of tuples or transactions as in the case of traditional data streams, and more importantly, the evolving of user records/profiles inside the streams. Such data streams bring difficulties on modeling and clustering for exploring users\\' behaviors. In this paper, we propose three models to summarize this kind of data streams, which are the batch model, the Evolving Objects (EO) model and the Dynamic Data Stream (DDS) model. Through creating, updating and deleting user profiles, these models summarize the behaviors of each user as a profile object. Based upon these models, clustering algorithms are employed to discover interesting user groups from the profile objects. We have evaluated all the proposed models on a large real-world data set, showing that the DDS model summarizes the data streams with evolving tuples more efficiently and effectively, and provides better basis for clustering users than the other two models. © 2012 IEEE.

  16. Duplication Detection When Evolving Feature Models of Software Product Lines

    Directory of Open Access Journals (Sweden)

    Amal Khtira

    2015-10-01

    Full Text Available After the derivation of specific applications from a software product line, the applications keep evolving with respect to new customer’s requirements. In general, evolutions in most industrial projects are expressed using natural language, because it is the easiest and the most flexible way for customers to express their needs. However, the use of this means of communication has shown its limits in detecting defects, such as inconsistency and duplication, when evolving the existing models of the software product line. The aim of this paper is to transform the natural language specifications of new evolutions into a more formal representation using natural language processing. Then, an algorithm is proposed to automatically detect duplication between these specifications and the existing product line feature models. In order to instantiate the proposed solution, a tool is developed to automatize the two operations.

  17. Cell Line Derived 5-FU and Irinotecan Drug-Sensitivity Profiles Evaluated in Adjuvant Colon Cancer Trial Data

    DEFF Research Database (Denmark)

    Buhl, Ida Kappel; Gerster, Sarah; Delorenzi, Mauro

    2016-01-01

    PURPOSE: This study evaluates whether gene signatures for chemosensitivity for irinotecan and 5-fluorouracil (5-FU) derived from in vitro grown cancer cell lines can predict clinical sensitivity to these drugs. METHODS: To test if an irinotecan signature and a SN-38 signature could identify...... patients who benefitted from the addition of irinotecan to 5-FU, we used gene expression profiles based on cell lines and clinical tumor material. These profiles were applied to expression data obtained from pretreatment formalin fixed paraffin embedded (FFPE) tumor tissue from 636 stage III colon cancer...... patients enrolled in the PETACC-3 prospective randomized clinical trial. A 5-FU profile developed similarly was assessed by comparing the PETACC-3 cohort with a cohort of 359 stage II colon cancer patients who underwent surgery but received no adjuvant therapy. RESULTS: There was no statistically...

  18. Modeling sludge accumulation rates in lined pit latrines in slum ...

    African Journals Online (AJOL)

    Modeling sludge accumulation rates in lined pit latrines in slum areas of Kampala City, Uganda. ... African Journal of Environmental Science and Technology ... methods such as open defecation and emptying into storm drainages are employed which consequently contribute to environmental and health-related challenges.

  19. Traceability for Model Driven, Software Product Line Engineering

    NARCIS (Netherlands)

    Anquetil, N.; Grammel, B.; Galvao, I.; Noppen, J.A.R.; Shakil Khan, S.; Arboleda, H.; Rashid, A.; Garcia, A.

    Traceability is an important challenge for software organizations. This is true for traditional software development and even more so in new approaches that introduce more variety of artefacts such as Model Driven development or Software Product Lines. In this paper we look at some aspect of the

  20. Numerical Modelling of the Segmental Lining of Underground Structures

    Directory of Open Access Journals (Sweden)

    Akbar Salemi

    2014-12-01

    Full Text Available There are several methods for analysing the behaviour of underground structures under different loading conditions. Most of these methods have many simplifications; therefore, in some cases, the results are too conservative and a very high safety factor, usually of more than 2 is needed. On the other hand, for stability analysis and the designing of support systems, these methods consider segmental lining and its joints as a uniform lining or a lining with pin connections. In this study, numerical modelling of the segmental lining of a tunnel was analysed using a sensitivity analysis of the static modelling. The numerical results were obtained by using a finite difference method (FLAC2D. Using this form of analysis, a new simple methodology was introduced so that more reliable results can be obtained. By comparing the frame analysis results obtained by the SAP2000 software with those obtained by the proposed method, it was concluded that the suggested method can be used as a simple and reasonable approach for the segmental lining of underground structures such as tunnels.

  1. Updating parameters of the chicken processing line model

    DEFF Research Database (Denmark)

    Kurowicka, Dorota; Nauta, Maarten; Jozwiak, Katarzyna

    2010-01-01

    A mathematical model of chicken processing that quantitatively describes the transmission of Campylobacter on chicken carcasses from slaughter to chicken meat product has been developed in Nauta et al. (2005). This model was quantified with expert judgment. Recent availability of data allows...... updating parameters of the model to better describe processes observed in slaughterhouses. We propose Bayesian updating as a suitable technique to update expert judgment with microbiological data. Berrang and Dickens’s data are used to demonstrate performance of this method in updating parameters...... of the chicken processing line model....

  2. Simulation of X-ray diffraction-line broadening due to dislocations in a model composite material

    NARCIS (Netherlands)

    Bor, Teunis Cornelis; Cleveringa, H.H.M.; Delhez, R; van der Giessen, E.

    2001-01-01

    X-ray diffraction-line profiles of two-dimensional, plastically deformed model composite materials are calculated and analysed in detail. The composite consists of elastic reinforcements in a crystalline solid and is subjected to macroscopic shear. Slip occurs in the matrix only due to the

  3. Modeling the Radial Color Profile of M31

    Directory of Open Access Journals (Sweden)

    Semionov D.

    2003-12-01

    Full Text Available We present a preliminary study of a fragment of the radial color profile of the spiral galaxy M 31 in terms of 2-D model accounting for internal extinction in the disk. The two stellar population disk model was assumed. The old dust-free disk population is represented by the double exponential law, and the young disk population, well mixed with the dust, resides in spiral arms of various scale-heights. We find a good agreement among the radial color B-R profiles produced by this simple model and the profile measured around the spiral arm S4 of M 31.

  4. Discrete Model Reference Adaptive Control System for Automatic Profiling Machine

    Directory of Open Access Journals (Sweden)

    Peng Song

    2012-01-01

    Full Text Available Automatic profiling machine is a movement system that has a high degree of parameter variation and high frequency of transient process, and it requires an accurate control in time. In this paper, the discrete model reference adaptive control system of automatic profiling machine is discussed. Firstly, the model of automatic profiling machine is presented according to the parameters of DC motor. Then the design of the discrete model reference adaptive control is proposed, and the control rules are proven. The results of simulation show that adaptive control system has favorable dynamic performances.

  5. Modeling the wafer temperature profile in a multiwafer LPCVD furnace

    Energy Technology Data Exchange (ETDEWEB)

    Badgwell, T.A. [Rice Univ., Houston, TX (United States). Dept. of Chemical Engineering; Trachtenberg, I.; Edgar, T.F. [Univ. of Texas, Austin, TX (United States). Dept. of Chemical Engineering

    1994-01-01

    A mathematical model has been developed to predict wafer temperatures within a hot-wall multiwafer low pressure chemical vapor deposition (LPCVD) reactor. The model predicts both axial (wafer-to-wafer) and radial (across-wafer) temperature profiles. Model predictions compare favorably with in situ wafer temperature measurements described in an earlier paper. Measured axial and radial temperature nonuniformities are explained in terms of radiative heat-transfer effects. A simulation study demonstrates how changes in the outer tube temperature profile and reactor geometry affect wafer temperatures. Reactor design changes which could improve the wafer temperature profile are discussed.

  6. An inter-comparison of far-infrared line-by-line radiative transfer models

    International Nuclear Information System (INIS)

    Kratz, D.P.; Mlynczak, M.G.; Mertens, C.J.Christopher J.; Brindley, Helen; Gordley, L.L.; Martin-Torres, Javier; Miskolczi, F.M.; Turner, D.D.

    2005-01-01

    A considerable fraction (>40%) of the outgoing longwave radiation escapes from the Earth's atmosphere-surface system within a region of the spectrum known as the far-infrared (wave-numbers less than 650 cm -1 ). Dominated by the line and continuum spectral features of the pure rotation band of water vapor, the far-infrared has a strong influence upon the radiative balance of the troposphere, and hence upon the climate of the Earth. Despite the importance of the far-infrared contribution, however, very few spectrally resolved observations have been made of the atmosphere for wave-numbers less than 650 cm -1 . The National Aeronautics and Space Administration (NASA), under its Instrument Incubator Program (IIP), is currently developing technology that will enable routine, space-based spectral measurements of the far-infrared. As part of NASA's IIP, the Far-Infrared Spectroscopy of the Troposphere (FIRST) project is developing an instrument that will have the capability of measuring the spectrum over the range from 100 to 1000 cm -1 at a resolution of 0.6 cm -1 . To properly analyze the data from the FIRST instrument, accurate radiative transfer models will be required. Unlike the mid-infrared, however, no inter-comparison of codes has been performed for the far-infrared. Thus, in parallel with the development of the FIRST instrument, an investigation has been undertaken to inter-compare radiative transfer models for potential use in the analysis of far-infrared measurements. The initial phase of this investigation has focused upon the inter-comparison of six distinct line-by-line models. The results from this study have demonstrated remarkably good agreement among the models, with differences being of order 0.5%, thereby providing a high measure of confidence in our ability to accurately compute spectral radiances in the far-infrared

  7. SPECTRO-POLARIMETRIC SIMULATIONS OF THE SOLAR LIMB: ABSORPTION-EMISSION Fe I 6301.5 Å AND 6302.5 Å LINE PROFILES AND TORSIONAL FLOWS IN THE INTERGRANULAR MAGNETIC FLUX CONCENTRATIONS

    Energy Technology Data Exchange (ETDEWEB)

    Shelyag, S. [School of Mathematical Sciences, Monash University, Clayton, Victoria 3800 (Australia)

    2015-03-01

    Using radiative magnetohydrodynamic simulations of the magnetized solar photosphere and detailed spectro-polarimetric diagnostics with the Fe I 6301.5 Å and 6302.5 Å photospheric lines in the local thermodynamic equilibrium approximation, we model active solar granulation as if it was observed at the solar limb. We analyze general properties of the radiation across the solar limb, such as the continuum and the line core limb darkening and the granulation contrast. We demonstrate the presence of profiles with both emission and absorption features at the simulated solar limb, and pure emission profiles above the limb. These profiles are associated with the regions of strong linear polarization of the emergent radiation, indicating the influence of the intergranular magnetic fields on the line formation. We analyze physical origins of the emission wings in the Stokes profiles at the limb, and demonstrate that these features are produced by localized heating and torsional motions in the intergranular magnetic flux concentrations.

  8. Self-Consistent Dynamical Model of the Broad Line Region

    International Nuclear Information System (INIS)

    Czerny, Bozena; Li, Yan-Rong; Sredzinska, Justyna; Hryniewicz, Krzysztof; Panda, Swayam; Wildy, Conor; Karas, Vladimir

    2017-01-01

    We develop a self-consistent description of the Broad Line Region based on the concept of a failed wind powered by radiation pressure acting on a dusty accretion disk atmosphere in Keplerian motion. The material raised high above the disk is illuminated, dust evaporates, and the matter falls back toward the disk. This material is the source of emission lines. The model predicts the inner and outer radius of the region, the cloud dynamics under the dust radiation pressure and, subsequently, the gravitational field of the central black hole, which results in asymmetry between the rise and fall. Knowledge of the dynamics allows us to predict the shapes of the emission lines as functions of the basic parameters of an active nucleus: black hole mass, accretion rate, black hole spin (or accretion efficiency) and the viewing angle with respect to the symmetry axis. Here we show preliminary results based on analytical approximations to the cloud motion.

  9. Self-Consistent Dynamical Model of the Broad Line Region

    Energy Technology Data Exchange (ETDEWEB)

    Czerny, Bozena [Center for Theoretical Physics, Polish Academy of Sciences, Warsaw (Poland); Li, Yan-Rong [Key Laboratory for Particle Astrophysics, Institute of High Energy Physics, Chinese Academy of Sciences, Beijing (China); Sredzinska, Justyna; Hryniewicz, Krzysztof [Copernicus Astronomical Center, Polish Academy of Sciences, Warsaw (Poland); Panda, Swayam [Center for Theoretical Physics, Polish Academy of Sciences, Warsaw (Poland); Copernicus Astronomical Center, Polish Academy of Sciences, Warsaw (Poland); Wildy, Conor [Center for Theoretical Physics, Polish Academy of Sciences, Warsaw (Poland); Karas, Vladimir, E-mail: bcz@cft.edu.pl [Astronomical Institute, Czech Academy of Sciences, Prague (Czech Republic)

    2017-06-22

    We develop a self-consistent description of the Broad Line Region based on the concept of a failed wind powered by radiation pressure acting on a dusty accretion disk atmosphere in Keplerian motion. The material raised high above the disk is illuminated, dust evaporates, and the matter falls back toward the disk. This material is the source of emission lines. The model predicts the inner and outer radius of the region, the cloud dynamics under the dust radiation pressure and, subsequently, the gravitational field of the central black hole, which results in asymmetry between the rise and fall. Knowledge of the dynamics allows us to predict the shapes of the emission lines as functions of the basic parameters of an active nucleus: black hole mass, accretion rate, black hole spin (or accretion efficiency) and the viewing angle with respect to the symmetry axis. Here we show preliminary results based on analytical approximations to the cloud motion.

  10. Modelling the line-of-sight contribution in substructure lensing

    Science.gov (United States)

    Despali, Giulia; Vegetti, Simona; White, Simon D. M.; Giocoli, Carlo; van den Bosch, Frank C.

    2018-04-01

    We investigate how Einstein rings and magnified arcs are affected by small-mass dark-matter haloes placed along the line of sight to gravitational lens systems. By comparing the gravitational signature of line-of-sight haloes with that of substructures within the lensing galaxy, we derive a mass-redshift relation that allows us to rescale the detection threshold (i.e. lowest detectable mass) for substructures to a detection threshold for line-of-sight haloes at any redshift. We then quantify the line-of-sight contribution to the total number density of low-mass objects that can be detected through strong gravitational lensing. Finally, we assess the degeneracy between substructures and line-of-sight haloes of different mass and redshift to provide a statistical interpretation of current and future detections, with the aim of distinguishing between cold dark matter and warm dark matter. We find that line-of-sight haloes statistically dominate with respect to substructures, by an amount that strongly depends on the source and lens redshifts, and on the chosen dark-matter model. Substructures represent about 30 percent of the total number of perturbers for low lens and source redshifts (as for the SLACS lenses), but less than 10 per cent for high-redshift systems. We also find that for data with high enough signal-to-noise ratio and angular resolution, the non-linear effects arising from a double-lens-plane configuration are such that one is able to observationally recover the line-of-sight halo redshift with an absolute error precision of 0.15 at the 68 per cent confidence level.

  11. Comparative Analysis of Genome Wide DNA Methylation Profiles for the Genic Male Sterile Cabbage Line 01-20S and Its Maintainer Line

    Science.gov (United States)

    Han, Fengqing; Zhang, Xiaoli; Liu, Xing; Su, Henan; Kong, Congcong; Fang, Zhiyuan; Yang, Limei; Zhuang, Mu; Zhang, Yangyong; Liu, Yumei; Li, Zhansheng; Lv, Honghao

    2017-01-01

    Methylation modifications play an important role in multiple biological processes. Several studies have reported altered methylation patterns in male sterile plants such as rice and wheat, but little is known about the global methylation profiles and their possible roles in the cabbage (Brassica oleracea) male sterile line. In this study, single-base-resolution bisulfite sequencing (BS-Seq) was adopted to identify the pattern and degree of cytosine methylation in the male sterile line 01-20S and its near-isogenic fertile line 01-20F. Similar methylation patterns were profiled, with some changes observed in local positions. In total, 505 differentially methylated genomic regions (DMRs) and 106 DMR-associated genes were detected. Nine genes related to pollen development were discovered and further validated by a quantitative reverse-transcription polymerase chain reaction (qRT-PCR). Among these, four were downregulated in 01-20S. In particular, Bol039180 (an invertase/pectin methylesterase inhibitor family protein) is likely involved in pectin degradation, and might play an important role in the pollen separation defects of 01-20S. This study facilitates a better understanding of DNA methylation alterations and their possible roles in genic male sterility in cabbages. PMID:28621722

  12. Study on the microstructure of recycled zircaloy by X-ray diffraction line profile analysis

    International Nuclear Information System (INIS)

    Ichikawa, Rodrigo U.; Pereira, Luiz A.T.; Imakuma, Kengo; Martinez, Luis G.; Turrillas, Xavier

    2013-01-01

    In the fabrication of nuclear fuel elements parts, Zircaloy machining chips are generated and, as this material is high-valued and controlled, its recycling presents high interest not only in economic aspects but also for environmental reasons and due to its strategic role in nuclear technology. Two processes for the recovery of these Zircaloy chips are being studied at IPEN-CNEN/SP. One of the processes is by conventional remelting of the material in a VAR (Vacuum Arc Remelting) furnace for producing solid ingots. Concurrently it is being studied an alternative process, by powder metallurgy methods, by which the chips are hydrided in order to become brittle and be grinded. The resulting ground powder is then compacted and finally vacuum-dehydrided and sintered in one step to form solid pieces. The VAR-remelted samples were also submitted to heat treatments in order to refine their microstructures, resulting in three different samples named 'as cast', 'annealed' and 'tempered'. The microstructures resulting from both processes and also from heat treatments were studied by metallography and X-ray diffraction (XRD). In this work, results of a XRD study are presented applying X-ray diffraction Line Profile Analysis (XLPA) methods in order to determine the mean crystallite sizes and the RMS microstrains on these samples. Additionally, a study for verify the influence of different standard materials used for the correction of the instrumental breadth in the XLPA was developed. The XLPA results show the influence of the processes and also of heat treatments on mean crystallite sizes and microstrains of the samples and were compared to their metallographic study and hardness. (author)

  13. Alterations in gene expression profiles between radioresistant and radiosensitive cell lines

    International Nuclear Information System (INIS)

    Zhou Fuxiang; Zhou Yunfeng; Xie Conghua; Dai Jing; Cao Zhen; Yu Haijun; Liao Zhengkai; Luo Zhiguo

    2007-01-01

    Objective: To study the-difference of gene expressions by the contrastive model including the cells with same pathological origin and genetic background, but definitely different radioresponse, and to find the main molecular targets related to radiosensitivity. Methods: Human larynx squamous carcinoma cell, Hep -2 was irradiated with dose of 637 cGy repeatedly to establish a radioresistant daughter cell line. The radiobiology characteristics were obtained using clone forming assay. The difference of gene expression between parent and daughter cells was detected by cDNA microarray using two different arrays including 14000 genes respectively. Results: A radioresistant cell strain Hep-2R was isolated from its parental strain Hep-2 cell. The SF 2 , D 0 , α, β for Hep-2R cell line were 0.6798, 3.24, 0.2951 and 0.0363, respectively, while 0.4148, 2.06, 0.1074 and 0.0405 for Hep-2, respectively (for SF 2 , χ 2 =63.957, P<0.001). Compared with Hep-2 cells, the expressions of 41 genes were significantly altered in the radioresistant Hep-2R cells, including 22 genes up-regulated and 19 genes down-regulated, which were involved in DNA repair, regulation of the cell cycle, cell proliferation, cytoskeleton, protein synthesis, cellular metabolism and especially apoptosis which is responsible for the different radiosensitivity between these two larynx cancer cells. The telomere protection protein gene, POT1, was the mostly up-regulated by 3.348 times. Conclusions: There is difference of gene expression between the radioresistant contrastive models. POT1 gene may be the target of radiosensitization. (authors)

  14. Comparative transcript profiling of alloplasmic male-sterile lines revealed altered gene expression related to pollen development in rice (Oryza sativa L.).

    Science.gov (United States)

    Hu, Jihong; Chen, Guanglong; Zhang, Hongyuan; Qian, Qian; Ding, Yi

    2016-08-05

    Cytoplasmic male sterility (CMS) is an ideal model for investigating the mitochondrial-nuclear interaction and down-regulated genes in CMS lines which might be the candidate genes for pollen development in rice. In this study, a set of rice alloplasmic sporophytic CMS lines was obtained by successive backcrossing of Meixiang B, with three different cytoplasmic types: D62A (D type), ZS97A (WA type) and XQZ-A (DA type). Using microarray, the anther transcript profiles of the three indica rice CMS lines revealed 622 differentially expressed genes (DEGs) in each of the three CMS lines compared with the maintainer line Meixiang B. GO and MapMan analysis indicated that these DEGs were mainly involved in lipid metabolism and cell wall organization. Compared with the gene expression of sporophytic and gametophytic CMS lines, 303 DEGs were identified and 56 of them were down-regulated in all the CMS lines of rice. These down-regulated DEGs in the CMS lines were found to be involved in tapetum or cell wall formation and their suppressed expression might be related to male sterility. Weighted gene co-expression network analysis (WGCNA) revealed that two modules were significantly associated with male sterility and many hub genes that were differentially expressed in the CMS lines. A large set of putative genes involved in anther development was identified in the present study. The results will give some information for the nuclear gene regulation by different cytoplasmic genotypes and provide a rich resource for further functional research on the pollen development in rice.

  15. Accelerating Information Retrieval from Profile Hidden Markov Model Databases.

    Science.gov (United States)

    Tamimi, Ahmad; Ashhab, Yaqoub; Tamimi, Hashem

    2016-01-01

    Profile Hidden Markov Model (Profile-HMM) is an efficient statistical approach to represent protein families. Currently, several databases maintain valuable protein sequence information as profile-HMMs. There is an increasing interest to improve the efficiency of searching Profile-HMM databases to detect sequence-profile or profile-profile homology. However, most efforts to enhance searching efficiency have been focusing on improving the alignment algorithms. Although the performance of these algorithms is fairly acceptable, the growing size of these databases, as well as the increasing demand for using batch query searching approach, are strong motivations that call for further enhancement of information retrieval from profile-HMM databases. This work presents a heuristic method to accelerate the current profile-HMM homology searching approaches. The method works by cluster-based remodeling of the database to reduce the search space, rather than focusing on the alignment algorithms. Using different clustering techniques, 4284 TIGRFAMs profiles were clustered based on their similarities. A representative for each cluster was assigned. To enhance sensitivity, we proposed an extended step that allows overlapping among clusters. A validation benchmark of 6000 randomly selected protein sequences was used to query the clustered profiles. To evaluate the efficiency of our approach, speed and recall values were measured and compared with the sequential search approach. Using hierarchical, k-means, and connected component clustering techniques followed by the extended overlapping step, we obtained an average reduction in time of 41%, and an average recall of 96%. Our results demonstrate that representation of profile-HMMs using a clustering-based approach can significantly accelerate data retrieval from profile-HMM databases.

  16. Accelerating Information Retrieval from Profile Hidden Markov Model Databases.

    Directory of Open Access Journals (Sweden)

    Ahmad Tamimi

    Full Text Available Profile Hidden Markov Model (Profile-HMM is an efficient statistical approach to represent protein families. Currently, several databases maintain valuable protein sequence information as profile-HMMs. There is an increasing interest to improve the efficiency of searching Profile-HMM databases to detect sequence-profile or profile-profile homology. However, most efforts to enhance searching efficiency have been focusing on improving the alignment algorithms. Although the performance of these algorithms is fairly acceptable, the growing size of these databases, as well as the increasing demand for using batch query searching approach, are strong motivations that call for further enhancement of information retrieval from profile-HMM databases. This work presents a heuristic method to accelerate the current profile-HMM homology searching approaches. The method works by cluster-based remodeling of the database to reduce the search space, rather than focusing on the alignment algorithms. Using different clustering techniques, 4284 TIGRFAMs profiles were clustered based on their similarities. A representative for each cluster was assigned. To enhance sensitivity, we proposed an extended step that allows overlapping among clusters. A validation benchmark of 6000 randomly selected protein sequences was used to query the clustered profiles. To evaluate the efficiency of our approach, speed and recall values were measured and compared with the sequential search approach. Using hierarchical, k-means, and connected component clustering techniques followed by the extended overlapping step, we obtained an average reduction in time of 41%, and an average recall of 96%. Our results demonstrate that representation of profile-HMMs using a clustering-based approach can significantly accelerate data retrieval from profile-HMM databases.

  17. Cotton fiber elongation network revealed by expression profiling of longer fiber lines introgressed with different Gossypium barbadense chromosome segments.

    Science.gov (United States)

    Fang, Lei; Tian, Ruiping; Li, Xinghe; Chen, Jiedan; Wang, Sen; Wang, Peng; Zhang, Tianzhen

    2014-10-02

    Cotton fiber, a highly elongated, thickened single cell of the seed epidermis, is a powerful cell wall research model. Fiber length, largely determined during the elongation stage, is a key property of fiber quality. Several studies using expressed sequence tags and microarray analysis have identified transcripts that accumulate preferentially during fiber elongation. To further show the mechanism of fiber elongation, we used Digital Gene Expression Tag Profiling to compare transcriptome data from longer fiber chromosome introgressed lines (CSILs) containing segments of various Gossypium barbadense chromosomes with data from its recurrent parent TM-1 during fiber elongation (from 5 DPA to 20 DPA). A large number of differentially expressed genes (DEGs) involved in carbohydrate, fatty acid and secondary metabolism, particularly cell wall biosynthesis, were highly upregulated during the fiber elongation stage, as determined by functional enrichment and pathway analysis. Furthermore, DEGs related to hormone responses and transcription factors showed upregulated expression levels in the CSILs. Moreover, metabolic and regulatory network analysis indicated that the same pathways were differentially altered, and distinct pathways exhibited altered gene expression, in the CSILs. Interestingly, mining of upregulated DEGs in the introgressed segments of these CSILs based on D-genome sequence data showed that these lines were enriched in glucuronosyltransferase, inositol-1, 4, 5-trisphosphate 3-kinase and desulfoglucosinolate sulfotransferase activity. These results were similar to the results of transcriptome analysis. This report provides an integrative network about the molecular mechanisms controlling fiber length, which are mainly tied to carbohydrate metabolism, cell wall biosynthesis, fatty acid metabolism, secondary metabolism, hormone responses and Transcription factors. The results of this study provide new insights into the critical factors associated with cell

  18. A fast method for Stokes profile synthesis. Radiative transfer modeling for ZDI and Stokes profile inversion

    Science.gov (United States)

    Carroll, T. A.; Kopf, M.; Strassmeier, K. G.

    2008-09-01

    Context: The major challenges for a fully polarized radiative transfer driven approach to Zeeman-Doppler imaging are still the enormous computational requirements. In every cycle of the iterative interplay between the forward process (spectral synthesis) and the inverse process (derivative based optimization) the Stokes profile synthesis requires several thousand evaluations of the polarized radiative transfer equation for a given stellar surface model. Aims: To cope with these computational demands and to allow for the incorporation of a full Stokes profile synthesis into Doppler- and Zeeman-Doppler imaging applications as well as into large scale solar Stokes profile inversions, we present a novel fast and accurate synthesis method for calculating local Stokes profiles. Methods: Our approach is based on artificial neural network models, which we use to approximate the complex non-linear mapping between the most important atmospheric parameters and the corresponding Stokes profiles. A number of specialized artificial neural networks, are used to model the functional relation between the model atmosphere, magnetic field strength, field inclination, and field azimuth, on one hand and the individual components (I,Q,U,V) of the Stokes profiles, on the other hand. Results: We performed an extensive statistical evaluation and show that our new approach yields accurate local as well as disk-integrated Stokes profiles over a wide range of atmospheric conditions. The mean rms errors for the Stokes I and V profiles are well below 0.2% compared to the exact numerical solution. Errors for Stokes Q and U are in the range of 1%. Our approach does not only offer an accurate approximation to the LTE polarized radiative transfer it, moreover, accelerates the synthesis by a factor of more than 1000.

  19. Study on Tower Models for EHV Transmission Line

    Directory of Open Access Journals (Sweden)

    Xu Bao-Qing

    2016-01-01

    Full Text Available Lightning outage accident is one of the main factors that threat seriously the safe and reliable operation of power system. So it is very important to establish reasonable transmission tower model and evaluate the impulse response characteristic of lightning wave traveling on the transmission tower properly for determining reliable lightning protection performance. With the help of Electromagnetic Transient Program (EMTP, six 500kV tower models are built. Aiming at one line to one transformer operating mode of 500kV substation, the intruding wave overvoltage under different tower models is calculated. The effect of tower model on intruding overvoltage has been studied. The results show that different tower models can result in great differences to the calculation results. Hence, reasonable selection of the tower model in the calculation of back- strike intruding wave is very important.

  20. On-Line Junction Temperature Monitoring of Switching Devices with Dynamic Compact Thermal Models Extracted with Model Order Reduction

    Directory of Open Access Journals (Sweden)

    Fabio Di Napoli

    2017-02-01

    Full Text Available Residual lifetime estimation has gained a key point among the techniques that improve the reliability and the efficiency of power converters. The main cause of failures are the junction temperature cycles exhibited by switching devices during their normal operation; therefore, reliable power converter lifetime estimation requires the knowledge of the junction temperature time profile. Since on-line dynamic temperature measurements are extremely difficult, in this work an innovative real-time monitoring strategy is proposed, which is capable of estimating the junction temperature profile from the measurement of the dissipated powers through an accurate and compact thermal model of the whole power module. The equations of this model can be easily implemented inside a FPGA, exploiting the control architecture already present in modern power converters. Experimental results on an IGBT power module demonstrate the reliability of the proposed method.

  1. A modelling approach for railway overhead line equipment asset management

    OpenAIRE

    Kilsby, Paul; Remenyte-Prescott, Rasa; Andrews, John

    2017-01-01

    The Overhead Line Equipment (OLE) is a critical sub-system of the 25kV AC overhead railway electrification system. If OLE asset management strategies can be evaluated using a whole lifecycle cost analysis that considers degradation processes and maintenance activities of the OLE components, the investment required to deliver the level of performance desired by railway customers and regulators can be based on evidence from the analysis results. A High Level Petri Net (HLPN) model, proposed in ...

  2. Modelling beach profile response during a storm in Praia de Faro, Portugal: Comparison of three beach profile models

    Science.gov (United States)

    Vousdoukas, M. I.; Almeida, L. M.; Ferreira; Karambas, T. V.

    2009-12-01

    The aim of the present contribution is to compare three numerical models on the grounds of their performance in simulating beach profile response on a monitored storm event in the Praia de Faro, South Portugal. The discussed storm occurred on February 1st, 2009, with duration ~24 hours and WSW waves, with maximum observed significant wave height and peak period, around 5 m and 8.5 s, respectively. The event was the most intense of the year, with a 3 years return period. Three models were run: the open source XBeach, a Bussinesq model (Karambas, T.V. and Koutitas, C., 2002. J. Wat, Port, Coas. & Oc. Eng., 128 (3)) and a linear energetics-approach model (Vousdoukas et al., Cont. Shelf Res., in press). Models were run for five profiles distributed along the whole study site, with circa 500 m spacing between each other; and beachface steepness increasing westwards (ranging from ~6% to 10%). All studied profiles showed signs of berm erosion and off-shore bar formation, with the impacts of the storm becoming less prominent, from the steeper NW profiles to the milder sloped ones, found on the SE boundary. All models overestimated the berm erosion, especially on the steeper profiles for which an unrealistic erosive scarp appeared, coupled with enhanced bar formation. Such behaviour was weaker on the Bousinesq model; which was calibrated for milder avalanching and produced overall improved results (rms errors between 0.2-0.35 m), with the cost of increased computational times. The performance of the energetics approach model was comparable to the other two, despite the significantly reduced computational times (~one order of magnitude). The overall rms errors ranged from 0.2 to 0.5 m, with the higher values corresponding to the western steeper profiles. Apart from a weakness of such profile models to simulate morphological response on reflective beaches, some other factors may account for the differences between predictions and observations: e.g. longshore transport, the

  3. Models for estimating photosynthesis parameters from in situ production profiles

    Science.gov (United States)

    Kovač, Žarko; Platt, Trevor; Sathyendranath, Shubha; Antunović, Suzana

    2017-12-01

    The rate of carbon assimilation in phytoplankton primary production models is mathematically prescribed with photosynthesis irradiance functions, which convert a light flux (energy) into a material flux (carbon). Information on this rate is contained in photosynthesis parameters: the initial slope and the assimilation number. The exactness of parameter values is crucial for precise calculation of primary production. Here we use a model of the daily production profile based on a suite of photosynthesis irradiance functions and extract photosynthesis parameters from in situ measured daily production profiles at the Hawaii Ocean Time-series station Aloha. For each function we recover parameter values, establish parameter distributions and quantify model skill. We observe that the choice of the photosynthesis irradiance function to estimate the photosynthesis parameters affects the magnitudes of parameter values as recovered from in situ profiles. We also tackle the problem of parameter exchange amongst the models and the effect it has on model performance. All models displayed little or no bias prior to parameter exchange, but significant bias following parameter exchange. The best model performance resulted from using optimal parameter values. Model formulation was extended further by accounting for spectral effects and deriving a spectral analytical solution for the daily production profile. The daily production profile was also formulated with time dependent growing biomass governed by a growth equation. The work on parameter recovery was further extended by exploring how to extract photosynthesis parameters from information on watercolumn production. It was demonstrated how to estimate parameter values based on a linearization of the full analytical solution for normalized watercolumn production and from the solution itself, without linearization. The paper complements previous works on photosynthesis irradiance models by analysing the skill and consistency of

  4. The Cancer Cell Line Encyclopedia enables predictive modeling of anticancer drug sensitivity

    Science.gov (United States)

    Barretina, Jordi; Caponigro, Giordano; Stransky, Nicolas; Venkatesan, Kavitha; Margolin, Adam A.; Kim, Sungjoon; Wilson, Christopher J.; Lehár, Joseph; Kryukov, Gregory V.; Sonkin, Dmitriy; Reddy, Anupama; Liu, Manway; Murray, Lauren; Berger, Michael F.; Monahan, John E.; Morais, Paula; Meltzer, Jodi; Korejwa, Adam; Jané-Valbuena, Judit; Mapa, Felipa A.; Thibault, Joseph; Bric-Furlong, Eva; Raman, Pichai; Shipway, Aaron; Engels, Ingo H.; Cheng, Jill; Yu, Guoying K.; Yu, Jianjun; Aspesi, Peter; de Silva, Melanie; Jagtap, Kalpana; Jones, Michael D.; Wang, Li; Hatton, Charles; Palescandolo, Emanuele; Gupta, Supriya; Mahan, Scott; Sougnez, Carrie; Onofrio, Robert C.; Liefeld, Ted; MacConaill, Laura; Winckler, Wendy; Reich, Michael; Li, Nanxin; Mesirov, Jill P.; Gabriel, Stacey B.; Getz, Gad; Ardlie, Kristin; Chan, Vivien; Myer, Vic E.; Weber, Barbara L.; Porter, Jeff; Warmuth, Markus; Finan, Peter; Harris, Jennifer L.; Meyerson, Matthew; Golub, Todd R.; Morrissey, Michael P.; Sellers, William R.; Schlegel, Robert; Garraway, Levi A.

    2012-01-01

    The systematic translation of cancer genomic data into knowledge of tumor biology and therapeutic avenues remains challenging. Such efforts should be greatly aided by robust preclinical model systems that reflect the genomic diversity of human cancers and for which detailed genetic and pharmacologic annotation is available1. Here we describe the Cancer Cell Line Encyclopedia (CCLE): a compilation of gene expression, chromosomal copy number, and massively parallel sequencing data from 947 human cancer cell lines. When coupled with pharmacologic profiles for 24 anticancer drugs across 479 of the lines, this collection allowed identification of genetic, lineage, and gene expression-based predictors of drug sensitivity. In addition to known predictors, we found that plasma cell lineage correlated with sensitivity to IGF1 receptor inhibitors; AHR expression was associated with MEK inhibitor efficacy in NRAS-mutant lines; and SLFN11 expression predicted sensitivity to topoisomerase inhibitors. Altogether, our results suggest that large, annotated cell line collections may help to enable preclinical stratification schemata for anticancer agents. The generation of genetic predictions of drug response in the preclinical setting and their incorporation into cancer clinical trial design could speed the emergence of “personalized” therapeutic regimens2. PMID:22460905

  5. The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity.

    Science.gov (United States)

    Barretina, Jordi; Caponigro, Giordano; Stransky, Nicolas; Venkatesan, Kavitha; Margolin, Adam A; Kim, Sungjoon; Wilson, Christopher J; Lehár, Joseph; Kryukov, Gregory V; Sonkin, Dmitriy; Reddy, Anupama; Liu, Manway; Murray, Lauren; Berger, Michael F; Monahan, John E; Morais, Paula; Meltzer, Jodi; Korejwa, Adam; Jané-Valbuena, Judit; Mapa, Felipa A; Thibault, Joseph; Bric-Furlong, Eva; Raman, Pichai; Shipway, Aaron; Engels, Ingo H; Cheng, Jill; Yu, Guoying K; Yu, Jianjun; Aspesi, Peter; de Silva, Melanie; Jagtap, Kalpana; Jones, Michael D; Wang, Li; Hatton, Charles; Palescandolo, Emanuele; Gupta, Supriya; Mahan, Scott; Sougnez, Carrie; Onofrio, Robert C; Liefeld, Ted; MacConaill, Laura; Winckler, Wendy; Reich, Michael; Li, Nanxin; Mesirov, Jill P; Gabriel, Stacey B; Getz, Gad; Ardlie, Kristin; Chan, Vivien; Myer, Vic E; Weber, Barbara L; Porter, Jeff; Warmuth, Markus; Finan, Peter; Harris, Jennifer L; Meyerson, Matthew; Golub, Todd R; Morrissey, Michael P; Sellers, William R; Schlegel, Robert; Garraway, Levi A

    2012-03-28

    The systematic translation of cancer genomic data into knowledge of tumour biology and therapeutic possibilities remains challenging. Such efforts should be greatly aided by robust preclinical model systems that reflect the genomic diversity of human cancers and for which detailed genetic and pharmacological annotation is available. Here we describe the Cancer Cell Line Encyclopedia (CCLE): a compilation of gene expression, chromosomal copy number and massively parallel sequencing data from 947 human cancer cell lines. When coupled with pharmacological profiles for 24 anticancer drugs across 479 of the cell lines, this collection allowed identification of genetic, lineage, and gene-expression-based predictors of drug sensitivity. In addition to known predictors, we found that plasma cell lineage correlated with sensitivity to IGF1 receptor inhibitors; AHR expression was associated with MEK inhibitor efficacy in NRAS-mutant lines; and SLFN11 expression predicted sensitivity to topoisomerase inhibitors. Together, our results indicate that large, annotated cell-line collections may help to enable preclinical stratification schemata for anticancer agents. The generation of genetic predictions of drug response in the preclinical setting and their incorporation into cancer clinical trial design could speed the emergence of 'personalized' therapeutic regimens.

  6. Net-erosion profile model and simulation experiments

    International Nuclear Information System (INIS)

    Sagara, Akio

    2001-01-01

    Estimation of net-erosion profile is requisite for evaluating the lifetime of divertor plates under high heat and particle fluxes of fusion plasmas. As a reference in benchmark tests of numerical calculation codes, a self-consistent analytical solution is presented for a simplified divertor condition, wherein the magnetic field line is normal to the target plate and the ionization mean free path of sputtered particles is assumed constant. The primary flux profile of hydrogen and impurities are externally given as well as the return ratio of sputtered atoms to the target. In the direction along the divertor trace, all conditions are uniform. The analytical solution is compared with net-erosion experiments carried out using the Compact Helical System (CHS). The deposition profiles of Ti and O impurities are in very good agreement with the analytical predictions. Recent preliminary results observed on divertor plates in the Large Helical Device (LHD) are briefly presented. (author)

  7. Non-LTE, line-blanketed model atmospheres for late O- and early B-type stars

    Science.gov (United States)

    Grigsby, James A.; Morrison, Nancy D.; Anderson, Lawrence S.

    1992-01-01

    The use of non-LTE line-blanketed model atmospheres to analyze the spectra of hot stars is reported. The stars analyzed are members of clusters and associations, have spectral types in the range O9-B2 and luminosity classes in the range III-IV, have slow to moderate rotation, and are photometrically constant. Sampled line opacities of iron-group elements were incorporated in the radiative transfer solution; solar abundances were assumed. Good to excellent agreement is obtained between the computed profiles and essentially all the line profiles used to fix the model, and reliable stellar parameters are derived. The synthetic M II 5581 equivalent widths agree well with the observed ones at the low end of the temperature range studied, but, above 25,000 K, the synthetic line is generally stronger than the observed line. The behavior of the observed equivalent widths of N II, N III, C II and C III lines as a function of Teff is studied. Most of the lines show much scatter, with no consistent trend that could indicate abundance differences from star to star.

  8. Simultaneous measure of a spectral line profile and the apparatus function of a Fabry-Perot spectrometer when continuous background is present

    International Nuclear Information System (INIS)

    Moreno, J.M.; Quintanilla, M.; Mar, S.

    1978-01-01

    A deconvolution method of registered profile on a Fabry-Perot spectrometer is developed, when the actual profile of the source is a Voigt pattern together with a continuous background. The reliability and accuracy of the method is tested with theoreticaly simulated profiles. The method is applied both to measure the real line profiles and to find the Fabry-Perot parameters, as a test of its validity on studies of experimental profiles. Both measure types -source profile and apparatus function- are made simultaneously by means of analysis of the variations of registered profile, at 6438.5A Cd line and 6328A He-Ne laser line, varying the optical path between interferometer mirrors. (author) [es

  9. Microstructure of calcite deformed by high-pressure torsion: An X-ray line profile study

    Science.gov (United States)

    Schuster, Roman; Schafler, Erhard; Schell, Norbert; Kunz, Martin; Abart, Rainer

    2017-11-01

    Calcite aggregates were deformed to high strain using high-pressure torsion and applying confining pressures of 1-6 GPa and temperatures between room temperature and 450 °C. The run products were characterized by X-ray diffraction, and key microstructural parameters were extracted employing X-ray line profile analysis. The dominant slip system was determined as r { 10 1 bar 4 } ⟨ 2 bar 021 ⟩ with edge dislocation character. The resulting dislocation density and the size of the coherently scattering domains (CSD) exhibit a systematic dependence on the P-T conditions of deformation. While high pressure generally impedes recovery through reducing point defect mobility, the picture is complicated by pressure-induced phase transformations in the CaCO3 system. Transition from the calcite stability field to those of the high-pressure polymorphs CaCO3-II, CaCO3-III and CaCO3-IIIb leads to a change of the microstructural evolution with deformation. At 450 °C and pressures within the calcite stability field, dislocation densities and CSD sizes saturate at shear strains exceeding 10 in agreement with earlier studies at lower pressures. In the stability field of CaCO3-II, the dislocation density exhibits a more complex behavior. Furthermore, at a given strain and strain rate, the dislocation density increases and the CSD size decreases with increasing pressure within the stability fields of either calcite or of the high-pressure polymorphs. There is, however, a jump from high dislocation densities and small CSDs in the upper pressure region of the calcite stability field to lower dislocation densities and larger CSDs in the low-pressure region of the CaCO3-II stability field. This jump is more pronounced at higher temperatures and less so at room temperature. The pressure influence on the deformation-induced evolution of dislocation densities implies that pressure variations may change the rheology of carbonate rocks. In particular, a weakening is expected to occur at

  10. Non-Maxwellian Analysis of the Transition-region Line Profiles Observed by the Interface Region Imaging Spectrograph

    Czech Academy of Sciences Publication Activity Database

    Dudík, Jaroslav; Polito, V.; Dzifčáková, Elena; Del Zanna, G.; Testa, P.

    2017-01-01

    Roč. 842, č. 1 (2017), 1/1-1/18 ISSN 0004-637X R&D Projects: GA ČR(CZ) GA16-18495S; GA ČR(CZ) GA17-16447S Institutional support: RVO:67985815 Keywords : line profiles * data analysis * radiation mechanisms Subject RIV: BN - Astronomy, Celestial Mechanics, Astrophysics OBOR OECD: Astronomy (including astrophysics,space science) Impact factor: 5.533, year: 2016

  11. Development of a wear model for the wheel profile optimisation on railway vehicles

    Science.gov (United States)

    Ignesti, M.; Innocenti, A.; Marini, L.; Meli, E.; Rindi, A.

    2013-09-01

    The modelling and the reduction of wear due to wheel-rail interaction is a fundamental aspect in the railway field, mainly correlated to safety, maintenance interventions and costs. In this work, the authors present two innovative wheel profiles, specifically designed with the aim of improving the wear and stability behaviour of the standard ORE S1002 wheel profile matched with the UIC60 rail profile canted at 1/20 rad, which represents the wheel-rail combination adopted in the Italian railway line. The two wheel profiles, conventionally named CD1 and DR2, have been developed by the authors in collaboration with Trenitalia S.p.A. The CD1 profile has been designed with the purpose of spreading the contact points in the flange zone on a larger area in order to reduce wear phenomena and having a constant equivalent conicity for small lateral displacements of the wheelset with respect to the centred position in the track. The DR2 wheel profile is instead designed to guarantee the same kinematic characteristics of the matching formed by ORE S1002 wheel profile and UIC60 rail profile with laying angle α p equal to 1/40 rad, widely common in European railways and characterised by good performances in both wear and kinematic behaviour. The evolution of wheel profiles due to wear has been evaluated through a wear model developed and validated by the authors in previous works. The wear model comprises two mutually interactive units: a vehicle model for the dynamic simulations and a model for the wear assessment. The whole model is based on a discrete process: each discrete step consists in one dynamic simulation and one profile update by means of the wear model while, within the discrete step, the profiles are supposed to be constant. The choice of an appropriate step is crucial in terms of precision and computational effort: the particular strategy adopted in the current work has been chosen for its capacity in representing the nonlinear wear evolution and for the low

  12. Model-based current profile control at DIII-D

    International Nuclear Information System (INIS)

    Yongsheng Ou; Schuster, E.; Luce, T.; Ferron, J.; Walker, M.; Humphreys, D.

    2006-01-01

    There is consensus in the fusion community that control of the radial profiles of various plasma quantities (current, pressure, rotation, etc.) will be key to the optimization of burning plasma scenarios. It has been suggested, for instance, that global current profile control, eventually combined with pressure profile control, can be an effective mechanism for neoclassical tearing mode (NTM) control and avoidance. It has been also suggested that simultaneous real-time control of the current and pressure profiles could lead to the steady state sustainment of an internal transport barrier (ITB) and so to a stationary optimized plasma regime. A key goal in control of an advanced tokamak (AT) discharge is to maintain safety factor (q) and pressure profiles that are compatible with both MHD stability at high toroidal beta and a high fraction of the self-generated bootstrap current. This will enable high fusion gain and noninductive sustainment of 100% of the plasma current for steady-state operation. Active feedback control of the q profile evolution at DIII-D has been already demonstrated [J.R. Ferron, et al., '' Control of DIII-D Advanced Tokamak Discharges '', 32 nd EPS Conference on Plasma Physics, Tarragona, 27 June - 1 July 2005, ECA vol. 29C, p. 1,069 (2005)]. In this work we report progress towards enabling model-based active control of the current profile during both plasma current ramp-up and flattop phases. Initial results on modeling and simulation of the dynamic evolution of the poloidal flux profile are presented. Dynamic models will allow the exploitation of recent developments in the field of (nonlinear) control of distributed-parameter systems to solve present profile control problems in magnetic fusion energy. (author)

  13. A new model for 'accept or reject' strategies in off-line and on-line megavoltage treatment evaluation

    International Nuclear Information System (INIS)

    Yan Di; Wong, John W.; Gustafson, Gary; Martinez, Alvaro

    1995-01-01

    Purpose: With megavoltage on-line imaging, a temporal record of the treatment setup variation is made available during the course of radiotherapy. This work describes the theoretical framework where the imaging data is incorporated as feedback for deriving off-line and on-line 'accept or reject' decisions to improve the quality of radiotherapy on an individual patient basis. Methods and Materials: A dynamic model of treatment setup variation is developed to describe: (a) the variations of multifraction treatment position and (b) the variation of measurement. Based on this model, a confidence region of subsequent treatment position is estimated from measurements of previous treatment position. The confidence region is compared with an allowance region of the treatment position, representing the acceptable margin of setup variation. The difference of the two regions are then evaluated to derive off-line and on-line 'accept or reject' treatment decisions. Results: The model was simulated retrospectively using sequential daily images from different treatment sites. 'Accept or reject' decisions were produced for on-line and off-line applications. The results also demonstrate the ability of the model to include the effects of setup variation that drifted during the course of treatment. Conclusion: The preliminary result demonstrates that 'accept or reject' treatment decisions can be derived quantitatively from on-line imaging data. The model shows potential to guide the physician and therapist in implementing efficient and accurate treatment adjustments. Further work is required to test the model in the clinical setting

  14. Assesment of spineless safflower (Carthamus tinctorius, L.) mutant lines for seed oil content and fatty acid profiles

    International Nuclear Information System (INIS)

    Ragab, A.I.; Kassem, M.; Moustafa, H.A.M.

    2008-01-01

    This study was conducted to assess the new spineless mutants that previously induced through gamma radiation and hybridization techniques in the advanced generation for seed oil content and fatty acid profiles The obtained results cleared that oil percentages of all seven safflower mutants were increased than local variety Giza (1) and the new mutant hybrid 2 line (white petals) had the highest increase value of oil percentage (10%) but the mutant line M14 (dark red petals) had the lowest increase value of oil percentage (3.1 %) The mutant line M7 (yellow petals) had the highest value of total saturated fatty acid (40.38%), because it had the highest value of palmitic fatty acid (25.16%), comparing to 10.01% value for local variety Giza (1), followed by mutant line hybrid 2 (white petals) which had (39.88%) because it had the highest value of caprylic, capric, lauric, myristic and stearic fatty acids. All safflower mutant lines had higher value of oleic fatty acid than that of the local variety Giza (1) the two new safflower mutant lines M7 (yellow petals) and hybrid 2 (white petal) had the highest value of oleic fatty acid 41.22% and 39.88% respectively in comparison with 13.5% for local variety Giza (1), the obtained results are indicating to seed oil content negative correlation between oleic and linoleic acids

  15. On-line monitoring of Soxhlet extraction by chromatography and mass spectrometry to reveal temporal extract profiles.

    Science.gov (United States)

    Chen, Ssu-Ying; Urban, Pawel L

    2015-06-30

    Soxhlet extraction is a popular sample preparation technique used in chemical analysis. It enables liberation of molecules embedded in complex matrices (for example, plant tissues, foodstuffs). In most protocols, samples are analyzed after the extraction process is complete. However, in order to optimize extraction conditions and enable comparisons between different types of extraction, it would be desirable to monitor it in real time. The main development of this work is the design and construction of the interface between Soxhlet extractor and GC-MS as well as ESI-MS system. The temporal extract profiles, obtained in the course of real-time GC-MS monitoring, have been fitted with mathematical functions to analyze extraction kinetics of different analytes. For example, the mass transfer coefficients of pinene, limonene and terpinene in lemon sample, estimated using the first-order kinetic model, are 0.540h(-1), 0.507h(-1) and 0.722h(-1), respectively. On the other hand, the Peleg model provides the following extraction rates of pinene, limonene and terpinene: 0.370nMh(-1), 0.216nMh(-1) and 0.596nMh(-1), respectively. The results suggest that both first-order kinetic and Peleg equations can be used to describe the progress of Soxhlet extraction. On-line monitoring of Soxhlet extraction reveals extractability of various analytes present in natural samples (plant tissue), and can potentially facilitate optimization of the extraction process. Copyright © 2015 Elsevier B.V. All rights reserved.

  16. Gene expression profiling in chemoresistant variants of three cell lines of different origin

    DEFF Research Database (Denmark)

    Johnsson, Anders; Vallon-Christensson, Johan; Strand, Carina

    2005-01-01

    . Several genes encoding ABC transporters were highly up-regulated, most notably ABCB1 (MDR1) and ABCB4 in several cell lines and ABCG2 (MXR) specifically in MX-resistant cell lines. A pronounced down-regulation of several histones was noted in the MCF-7-derived resistant sublines. Altered expression...

  17. Neonatal Cytokine Profile in the Airway Mucosal Lining Fluid Is Skewed by Maternal Atopy

    DEFF Research Database (Denmark)

    Folsgaard, Nilofar V.; Chawes, Bo L.; Rasmussen, Morten A.

    2012-01-01

    on the cytokines and chemokines in the upper airway mucosal lining fluid of healthy neonates. Objectives: To study parental atopic imprinting on the cytokines and chemokines in the upper airway mucosal lining fluid of healthy neonates. Methods: Eighteen cytokines and chemokines were quantified in nasal mucosal...

  18. Modeling Profiles and Signatures of Enrichments

    Science.gov (United States)

    Ali, A.; Qualls, C.; Lucas, S. G.; Lombari, G.; Appenzeller, O.

    2014-12-01

    Anthropogenic and geochemical enrichment of soils and living matter have been well documented 1, 2, 3.Here we report on geochemical, anthropogenic and biological enrichments with heavy metals in Modern Peru and compared this to Modern and ancient data from New Mexico, USA. We established a signature derived from the quantities of 25 metals in various biological, fossil and soil materials. We also speculate that human adaptation to mercury toxicity may occur in remarkably short time spans during the Holocene. We found mercury concentrations in Modern pigeon feathers and llama wool from free foraging birds and animals in Albuquerque, NM, ranging from 0.006 to 0.019 mg/Kg of tissue. The values for Modern Peru ranged from 22.0 to 556 mg/Kg for the same tissues. We discovered, in 64 million-year-old fossilized plants from New Mexico (Paleocene Nacimiento Formation, San Juan Basin), a mercury concentration of 1.11 mg/Kg of fossil, whereas Modern plant material from the Rio Grande Basin in New Mexico contained no mercury. Profiling of metal content of these samples suggests that mercury is a proxy for anthropogenic rather than geochemical enrichment in the localities we examined. We found no overt signs of mercury toxicity in contemporaneous inhabitants of Huancavelica4, Peru; one of the ten most mercury-polluted places in the world and the mercury concentration in their hair is well below modern admissible levels. However, assessment of their annual scalp hair growth-rate showed marked reduction in growth (~ 5cm/yr) versus ~ 16cm/year for normal scalp hair from other continents4. This is consistent with a toxic effect of heavy metals on human metabolism and especially autonomic nervous system function in Huancavelica, Peru. Contemporaneous anthropogenic activities are known to increase heavy metal content in the biosphere with potentially toxic effects on humans. However, signs of human evolutionary adaptation to such toxins might already be evident in Peru4.

  19. Time Ordering Effects on Hydrogen Zeeman-Stark Line Profiles in Low-Density Magnetized Plasmas

    Directory of Open Access Journals (Sweden)

    J. Rosato

    2010-01-01

    Full Text Available Stark broadening of hydrogen lines is investigated in low-density magnetized plasmas, at typical conditions of magnetic fusion experiments. The role of time ordering is assessed numerically, by using a simulation code accounting for the evolution of the microscopic electric field generated by the charged particles moving at the vicinity of the atom. The Zeeman effect due to the magnetic field is also retained. Lyman lines with a low principal quantum number n are first investigated, for an application to opacity calculations; next Balmer lines with successively low and high principal quantum numbers are considered for diagnostic purposes. It is shown that neglecting time ordering results in a dramatic underestimation of the Stark effect on the low-n lines. Another conclusion is that time ordering becomes negligible only when ion dynamics effects vanish, as shown in the case of high-n lines.

  20. Beam profile control of line focus for x-ray laser experiment

    Energy Technology Data Exchange (ETDEWEB)

    Yoon, G.Y.; Jitsuno, T.; Nakatsuka, M.; Daido, H.; Kato, Y.; Nakai, S. [Osaka Univ., Suita, Osaka (Japan). Inst. of Laser Engineering

    1995-12-31

    A high aspect ratio line focus on a target for the x-ray laser experiments is required for obtaining a high gain-length product. A new line focus system is developed to generate a uniform line focus. The system consists of a deformable mirror of a continuous faceplate type which provides an appropriate wavefront distribution for compensating an aberration of a line focus optics. The width and intensity distribution of 18.2mm long line focus have been improved on 2 times diffraction limit. As other application, a rectangular beam shaping from a circular defocused beam is investigated by the experiment and the diffraction calculation. The controllability of intensity distribution of laser beam by deformable mirror has been demonstrated.

  1. Modelling Baryonic Effects on Galaxy Cluster Mass Profiles

    Science.gov (United States)

    Shirasaki, Masato; Lau, Erwin T.; Nagai, Daisuke

    2018-03-01

    Gravitational lensing is a powerful probe of the mass distribution of galaxy clusters and cosmology. However, accurate measurements of the cluster mass profiles are limited by uncertainties in cluster astrophysics. In this work, we present a physically motivated model of baryonic effects on the cluster mass profiles, which self-consistently takes into account the impact of baryons on the concentration as well as mass accretion histories of galaxy clusters. We calibrate this model using the Omega500 hydrodynamical cosmological simulations of galaxy clusters with varying baryonic physics. Our model will enable us to simultaneously constrain cluster mass, concentration, and cosmological parameters using stacked weak lensing measurements from upcoming optical cluster surveys.

  2. Stokes profile analysis and vector magnetic fields. I. Inversion of photospheric lines

    International Nuclear Information System (INIS)

    Skumanich, A.; Lites, B.W.

    1987-01-01

    Improvements are proposed for the Auer et al. (1977) method for the analytic inversion of Stokes profiles via nonlinear least squares. The introduction of additional physics into the Mueller absorption matrix (by including damping wings and magnetooptical birefringence, and by decoupling the intensity profile from the three-vector polarization profile in the analysis) is found to result in a more robust inversion method, providing more reliable and accurate estimates of sunspot vector magnetic fields without significant loss of economy. The method is applied to sunspot observations obtained with the High Altitude Observatory polarimeter. 29 references

  3. Modelling the Pressure Profile for Optical Cables in Ducts

    NARCIS (Netherlands)

    Snippe, A.; Bresser, O.R.; Hoekstra, Sipke; Griffioen, A.

    2013-01-01

    The longitudinal pressure profile is an important parameter when calculating the correct blowing force during the process of installing optical fiber cables using the viscous flow of air. This paper presents a model of the pressure inside the duct that contains a moving cable. This new model of the

  4. PEMBUATAN MODEL PROFIL MAHASISWA FAKULTAS TEKNIK UNIVERSITAS PANCASILA

    Directory of Open Access Journals (Sweden)

    Paryudi Paryudi

    2009-01-01

    Full Text Available Promotion is a must for a university to get students. With the innocence of the promotion team about the existing student profile, it will cause the team does not know which segment should be the promotion target. The consequence is that the promotion cost will be higher. In order to have a better promotion, we can use direct marketing method. In this method, a profile model of the existing students must be first created. With this profile model, promotion team can focus the promotion only to candidate student match with the model. The advantages of this method are: promotion cost can be reduced, response rate increase, and profit also increase. In order to create a model in direct marketing, we need previous promotion data. Since previous promotion data is not available, two methods in creating preliminary models are proposed. Next, the preliminary models will be tested using data mining software available in the market. Model with minimal accuracy of 75% will be chosen. If there are more than one model with minimal accuracy of 75%, then model with the highest accuracy will be chosen. Abstract in Bahasa Indonesia: Promosi merupakan suatu keharusan bagi sebuah universitas untuk mendapatkan mahasiswa. Dengan masih awamnya tim promosi terhadap profil mahasiswa yang sudah ada, maka tim promosi melakukan promosi tanpa melihat segmen pasar yang harus dituju. Konsekuensinya adalah biaya promosi menjadi lebih mahal. Untuk melakukan promosi dengan lebih baik, dapat menggunakan metode direct marketing. Pada metode ini, model profil dari mahasiswa yang sudah ada harus dibuat terlebih dulu. Dengan menggunakan model profil ini, tim promosi dapat memfokuskan promosi hanya pada calon-calon mahasiswa yang sesuai dengan model. Keuntungan dari metode promosi ini adalah biaya promosi dapat dikurangi, tingkat respon meningkat, dan keuntungan juga meningkat. Untuk membuat model pada direct marketing dibutuhkan data dari promosi sebelumnya. Karena data promosi

  5. Beam Profile Measurement in MTA Beam Line for High Pressure RF Cavity Beam Test

    International Nuclear Information System (INIS)

    Jana, M.R.; Bross, A.; Chung, M.; Greer, S.; Johnstone, C.; Kobilarcik, T.; Koizumi, G.; Leonova, M.; Moretti, A.; Popovic, M.; Schwartz, T.

    2012-01-01

    Recent High Pressure RF (HPRF) cavity experiment at MuCool Test Area (MTA) has used 400 MeV Linac proton beam to study the beam loading effect. When the energetic proton beam passes through the cavity, it ionizes the inside gas and produces the electrons. These electrons consume RF power inside the cavity. Number of electrons produced per cm inside the cavity (at 950 psi Hydrogen gas) per incident proton is ∼ 1200. The measurement of beam position and profile are necessary. MTA is flammable gas (Hydrogen) hazard zone so we have developed a passive beam diagnostic instrument using Chromox-6 scintillation screen and CCD camera. This paper presents quantitative information about beam position and beam profile. Neutral density filter was used to avoid saturation of CCD camera. Image data is filtered and fitted with Gaussian function to compute the beam size. The beam profile obtained from scintillation screen shall be compared with multi-wire beam profile.

  6. Stratospheric and Mesospheric Pressure-Temperature Profiles from the Rotational Analysis of CO subscript2 Lines

    Science.gov (United States)

    Gunson, M.; Lowes, L.; Abrams, M.; Raper, O.; Farmer, C.; Stiller, G.; Zander, R.; Rinsland, C.

    1994-01-01

    A simple, classical, and expedient method for the retrieval of atmospheric pressure-temperature profiles has been applied to the high-resolution infrared solar absorption spectra obtained with the Atmospheric Trace Molecule Spectroscopy (ATMOS) instrument.

  7. Systematic Blueshift of Line Profiles in the Type IIn Supernova 2010jl: Evidence for Post-shock Dust Formation?

    Science.gov (United States)

    Smith, Nathan; Silverman, Jeffrey M.; Filippenko, Alexei V.; Cooper, Michael C.; Matheson, Thomas; Bian, Fuyan; Weiner, Benjamin J.; Comerford, Julia M.

    2012-01-01

    Type IIn supernovae (SNe) show spectral evidence for strong interaction between their blast wave and dense circumstellar material (CSM) around the progenitor star. SN 2010jl was the brightest core-collapse supernova in 2010, and it was a Type IIn explosion with strong CSM interaction. Andrews et al. recently reported evidence for an infrared (IR) excess in SN 2010jl, indicating either new dust formation or the heating of CSM dust in an IR echo. Here we report multi-epoch spectra of SN 2010jl that reveal the tell-tale signature of new dust formation: emission-line profiles becoming systematically more blueshifted as the red side of the line is blocked by increasing extinction. The effect is seen clearly in the intermediate-width (400-4000 km s-1) component of Hα beginning roughly 30 days after explosion. Moreover, we present near-IR spectra demonstrating that the asymmetry in the hydrogen-line profiles is wavelength dependent, appearing more pronounced at shorter wavelengths. This evidence suggests that new dust grains had formed quickly in the post-shock shell of SN 2010jl arising from CSM interaction. Since the observed dust temperature has been attributed to an IR echo and not to new dust, either (1) IR excess emission at λ sensitive tracer of new dust formation in SNe, or (2) some assumptions about expected dust temperatures might require further study. Lastly, we discuss one possible mechanism other than dust that might lead to increasingly blueshifted line profiles in SNe IIn, although the wavelength dependence of the asymmetry argues against this hypothesis in the case of SN 2010jl.

  8. Efficient material flow in mixed model assembly lines.

    Science.gov (United States)

    Alnahhal, Mohammed; Noche, Bernd

    2013-01-01

    In this study, material flow from decentralized supermarkets to stations in mixed model assembly lines using tow (tugger) trains is investigated. Train routing, scheduling, and loading problems are investigated in parallel to minimize the number of trains, variability in loading and in routes lengths, and line-side inventory holding costs. The general framework for solving these problems in parallel contains analytical equations, Dynamic Programming (DP), and Mixed Integer Programming (MIP). Matlab in conjunction with LP-solve software was used to formulate the problem. An example was presented to explain the idea. Results which were obtained in very short CPU time showed the effect of using time buffer among routes on the feasible space and on the optimal solution. Results also showed the effect of the objective, concerning reducing the variability in loading, on the results of routing, scheduling, and loading. Moreover, results showed the importance of considering the maximum line-side inventory beside the capacity of the train in the same time in finding the optimal solution.

  9. Profiling of gene expression regulated by 17β-estradiol and tamoxifen in estrogen receptor-positive and estrogen receptor-negative human breast cancer cell lines

    Directory of Open Access Journals (Sweden)

    Rangel N

    2017-09-01

    Full Text Available Nelson Rangel,1,2 Victoria E Villegas,2 Milena Rondón-Lagos3 1Department of Medical Sciences, University of Turin, Turin, Italy; 2Faculty of Natural Sciences and Mathematics, Universidad del Rosario, Bogotá, Colombia; 3School of Biological Sciences, Universidad Pedagógica y Tecnológica de Colombia, Tunja, Colombia Abstract: One area of great importance in breast cancer (BC research is the study of gene expression regulated by both estrogenic and antiestrogenic agents. Although many studies have been performed in this area, most of them have only addressed the effects of 17β-estradiol (E2 and tamoxifen (TAM on MCF7 cells. This study aimed to determine the effect of low doses of E2 and TAM on the expression levels of 84 key genes, which are commonly involved in breast carcinogenesis, in four BC cell lines differentially expressing estrogen receptor (ER α and HER2 (MCF7, T47D, BT474, and SKBR3. The results allowed us to determine the expression patterns modulated by E2 and TAM in ERα+ and ERα− cell lines, as well as to identify differences in expression patterns. Although the MCF7 cell line is the most frequently used model to determine gene expression profiles in response to E2 and TAM, the changes in gene expression patterns identified in ERα+ and ERα− cell lines could reflect distinctive properties of these cells. Our results could provide important markers to be validated in BC patient samples, and subsequently used for predicting the outcome in ERα+ and ERα− tumors after TAM or hormonal therapy. Considering that BC is a molecularly heterogeneous disease, it is important to understand how well, and which cell lines, best model that diversity. Keywords: breast cancer, cell lines, 17β-estradiol, tamoxifen, ERα+, ERα−, qPCR

  10. Twisted sigma-model solitons on the quantum projective line

    Science.gov (United States)

    Landi, Giovanni

    2018-04-01

    On the configuration space of projections in a noncommutative algebra, and for an automorphism of the algebra, we use a twisted Hochschild cocycle for an action functional and a twisted cyclic cocycle for a topological term. The latter is Hochschild-cohomologous to the former and positivity in twisted Hochschild cohomology results into a lower bound for the action functional. While the equations for the critical points are rather involved, the use of the positivity and the bound by the topological term lead to self-duality equations (thus yielding twisted noncommutative sigma-model solitons, or instantons). We present explicit nontrivial solutions on the quantum projective line.

  11. Lifetime injury prevention: the sport profile model.

    Science.gov (United States)

    Webborn, Nick

    2012-03-01

    Participation in sporting activities carries an injury risk. Conversely, the increased awareness that physical inactivity is a major risk factor for disease has led government agencies and the medical community to encourage increased levels of physical activity. Many people will achieve this through participation in sport. Injury inevitably leads to a reduction in participation on a temporary or permanent basis, but the injury experience may also influence the lifelong physical activity behaviour. Few studies adequately examine the possible long-term consequences of sport participation after the competitive period has been completed, but by understanding the patterns of injuries in different sports one test can develop strategies to prevent and better manage the conditions that occur and promote lifelong physical activity. There is a need to develop models of understanding of injury risk at different life phases and levels of participation in a specific sport. The risk assessment of sport participation has to be relevant to a particular sport, the level of participation, skill, age and potential future health consequences. This article describes a sport-specific model which will improve guidance for coaches and healthcare professionals. It poses questions for sports physicians, healthcare providers, educators and for governing bodies of sports to address in a systematic fashion. Additionally the governing body, as an employer, will need to meet the requirements for risk assessment for professional sport and its ethical responsibility to the athlete.

  12. Gene expression profiling in chemoresistant variants of three cell lines of different origin

    DEFF Research Database (Denmark)

    Johnsson, Anders; Vallon-Christensson, Johan; Strand, Carina

    2005-01-01

    lines (K562 leukemia, MCF-7 breast cancer and S1 colon cancer) with acquired resistance against five cytostatic drugs; daunorubicin (DNR), doxorubicin (DOX), vincristine (VCR), etoposide (VP) and mitoxantrone (MX). RESULTS: The resistant cell lines clustered together based on their type of origin...... was also seen in, e.g., GSTs, topoisomerases, caveolins, annexins and CD44. CONCLUSION: These results will constitute a platform for further studies on specific pathways and biological processes involved in chemotherapy resistance....

  13. Molecular analysis of urothelial cancer cell lines for modeling tumor biology and drug response.

    Science.gov (United States)

    Nickerson, M L; Witte, N; Im, K M; Turan, S; Owens, C; Misner, K; Tsang, S X; Cai, Z; Wu, S; Dean, M; Costello, J C; Theodorescu, D

    2017-01-05

    The utility of tumor-derived cell lines is dependent on their ability to recapitulate underlying genomic aberrations and primary tumor biology. Here, we sequenced the exomes of 25 bladder cancer (BCa) cell lines and compared mutations, copy number alterations (CNAs), gene expression and drug response to BCa patient profiles in The Cancer Genome Atlas (TCGA). We observed a mutation pattern associated with altered CpGs and APOBEC-family cytosine deaminases similar to mutation signatures derived from somatic alterations in muscle-invasive (MI) primary tumors, highlighting a major mechanism(s) contributing to cancer-associated alterations in the BCa cell line exomes. Non-silent sequence alterations were confirmed in 76 cancer-associated genes, including mutations that likely activate oncogenes TERT and PIK3CA, and alter chromatin-associated proteins (MLL3, ARID1A, CHD6 and KDM6A) and established BCa genes (TP53, RB1, CDKN2A and TSC1). We identified alterations in signaling pathways and proteins with related functions, including the PI3K/mTOR pathway, altered in 60% of lines; BRCA DNA repair, 44%; and SYNE1-SYNE2, 60%. Homozygous deletions of chromosome 9p21 are known to target the cell cycle regulators CDKN2A and CDKN2B. This loci was commonly lost in BCa cell lines and we show the deletions extended to the polyamine enzyme methylthioadenosine (MTA) phosphorylase (MTAP) in 36% of lines, transcription factor DMRTA1 (27%) and antiviral interferon epsilon (IFNE, 19%). Overall, the BCa cell line genomic aberrations were concordant with those found in BCa patient tumors. We used gene expression and copy number data to infer pathway activities for cell lines, then used the inferred pathway activities to build a predictive model of cisplatin response. When applied to platinum-treated patients gathered from TCGA, the model predicted treatment-specific response. Together, these data and analysis represent a valuable community resource to model basic tumor biology and to study

  14. Initialization of a mesoscale model with satellite derived temperature profiles

    Science.gov (United States)

    Kalb, Michael W.

    1986-01-01

    The abilities of rawinsonde data and Tiros-N satellite derived temperature profile data to depict mesoscale precipitation accumulation are evaluated. Four mesoscale simulations using combinations of temperature, low-level wind, and low-level wind initialization were performed with the limited area mesoscale prediction system (LAMPS) model. Comparisons of the simulations with operational LFM forecast accumulations reveal that the LAMPS model simulations provide a better depiction of the observed precipitation accumulation than the LFM forecasts, and the satellite temperature profiles produce better mesoscale precipitation accumulation forecasts than the rawinsonde temperature data.

  15. Comparison of the gene expression profile of undifferentiated human embryonic stem cell lines and differentiating embryoid bodies

    Directory of Open Access Journals (Sweden)

    Rao Mahendra S

    2005-10-01

    Full Text Available Abstract Background The identification of molecular pathways of differentiation of embryonic stem cells (hESC is critical for the development of stem cell based medical therapies. In order to identify biomarkers and potential regulators of the process of differentiation, a high quality microarray containing 16,659 seventy base pair oligonucleotides was used to compare gene expression profiles of undifferentiated hESC lines and differentiating embryoid bodies. Results Previously identified "stemness" genes in undifferentiated hESC lines showed down modulation in differentiated cells while expression of several genes was induced as cells differentiated. In addition, a subset of 194 genes showed overexpression of greater than ≥ 3 folds in human embryoid bodies (hEB. These included 37 novel and 157 known genes. Gene expression was validated by a variety of techniques including another large scale array, reverse transcription polymerase chain reaction, focused cDNA microarrays, massively parallel signature sequencing (MPSS analysis and immunocytochemisty. Several novel hEB specific expressed sequence tags (ESTs were mapped to the human genome database and their expression profile characterized. A hierarchical clustering analysis clearly depicted a distinct difference in gene expression profile among undifferentiated and differentiated hESC and confirmed that microarray analysis could readily distinguish them. Conclusion These results present a detailed characterization of a unique set of genes, which can be used to assess the hESC differentiation.

  16. Comparison of the gene expression profile of undifferentiated human embryonic stem cell lines and differentiating embryoid bodies.

    Science.gov (United States)

    Bhattacharya, Bhaskar; Cai, Jingli; Luo, Youngquan; Miura, Takumi; Mejido, Josef; Brimble, Sandii N; Zeng, Xianmin; Schulz, Thomas C; Rao, Mahendra S; Puri, Raj K

    2005-10-05

    The identification of molecular pathways of differentiation of embryonic stem cells (hESC) is critical for the development of stem cell based medical therapies. In order to identify biomarkers and potential regulators of the process of differentiation, a high quality microarray containing 16,659 seventy base pair oligonucleotides was used to compare gene expression profiles of undifferentiated hESC lines and differentiating embryoid bodies. Previously identified "stemness" genes in undifferentiated hESC lines showed down modulation in differentiated cells while expression of several genes was induced as cells differentiated. In addition, a subset of 194 genes showed overexpression of greater than > or = 3 folds in human embryoid bodies (hEB). These included 37 novel and 157 known genes. Gene expression was validated by a variety of techniques including another large scale array, reverse transcription polymerase chain reaction, focused cDNA microarrays, massively parallel signature sequencing (MPSS) analysis and immunocytochemisty. Several novel hEB specific expressed sequence tags (ESTs) were mapped to the human genome database and their expression profile characterized. A hierarchical clustering analysis clearly depicted a distinct difference in gene expression profile among undifferentiated and differentiated hESC and confirmed that microarray analysis could readily distinguish them. These results present a detailed characterization of a unique set of genes, which can be used to assess the hESC differentiation.

  17. Conditioning a segmented stem profile model for two diameter measurements

    Science.gov (United States)

    Raymond L. Czaplewski; Joe P. Mcclure

    1988-01-01

    The stem profile model of Max and Burkhart (1976) is conditioned for dbh and a second upper stem measurement. This model was applied to a loblolly pine data set using diameter outside bark at 5.3m (i.e., height of 17.3 foot Girard form class) as the second upper stem measurement, and then compared to the original, unconditioned model. Variance of residuals was reduced...

  18. Model for radial gas fraction profiles in vertical pipe flow

    International Nuclear Information System (INIS)

    Lucas, D.; Krepper, E.; Prasser, H.M.

    2001-01-01

    A one-dimensional model is presented, which predicts the radial volume fraction profiles from a given bubble size distribution. It bases on the assumption of an equilibrium of the forces acting on a bubble perpendicularly to the flow path (non drag forces). For the prediction of the flow pattern this model could be used within an procedure together with appropriate models for local bubble coalescence and break-up. (orig.)

  19. Quantitative profiling of housekeeping and Epstein-Barr virus gene transcription in Burkitt lymphoma cell lines using an oligonucleotide microarray

    Directory of Open Access Journals (Sweden)

    Niggli Felix K

    2006-06-01

    Full Text Available Abstract Background The Epstein-Barr virus (EBV is associated with lymphoid malignancies, including Burkitt's lymphoma (BL, and can transform human B cells in vitro. EBV-harboring cell lines are widely used to investigate lymphocyte transformation and oncogenesis. Qualitative EBV gene expression has been extensively described, but knowledge of quantitative transcription is lacking. We hypothesized that transcription levels of EBNA1, the gene essential for EBV persistence within an infected cell, are similar in BL cell lines. Results To compare quantitative gene transcription in the BL cell lines Namalwa, Raji, Akata, Jijoye, and P3HR1, we developed an oligonucleotide microarray chip, including 17 housekeeping genes, six latent EBV genes (EBNA1, EBNA2, EBNA3A, EBNA3C, LMP1, LMP2, and four lytic EBV genes (BZLF1, BXLF2, BKRF2, BZLF2, and used the cell line B95.8 as a reference for EBV gene transcription. Quantitative polymerase chain reaction assays were used to validate microarray results. We found that transcription levels of housekeeping genes differed considerably among BL cell lines. Using a selection of housekeeping genes with similar quantitative transcription in the tested cell lines to normalize EBV gene transcription data, we showed that transcription levels of EBNA1 were quite similar in very different BL cell lines, in contrast to transcription levels of other EBV genes. As demonstrated with Akata cells, the chip allowed us to accurately measure EBV gene transcription changes triggered by treatment interventions. Conclusion Our results suggest uniform EBNA1 transcription levels in BL and that microarray profiling can reveal novel insights on quantitative EBV gene transcription and its impact on lymphocyte biology.

  20. Metabolism and fatty acid profile in fat and lean rainbow trout lines fed with vegetable oil: effect of carbohydrates.

    Directory of Open Access Journals (Sweden)

    Biju Sam Kamalam

    Full Text Available The present study investigated the effect of dietary carbohydrates on metabolism, with special focus on fatty acid bioconversion and flesh lipid composition in two rainbow trout lines divergently selected for muscle lipid content and fed with vegetable oils. These lines were chosen based on previously demonstrated potential differences in LC-PUFA synthesis and carbohydrate utilization. Applying a factorial study design, juvenile trout from the lean (L and the fat (F line were fed vegetable oil based diets with or without gelatinised starch (17.1% for 12 weeks. Blood, liver, muscle, intestine and adipose tissue were sampled after the last meal. Feed intake and growth was higher in the L line than the F line, irrespective of the diet. Moderate postprandial hyperglycemia, strong induction of hepatic glucokinase and repressed glucose-6-phosphatase transcripts confirmed the metabolic response of both lines to carbohydrate intake. Further at the transcriptional level, dietary carbohydrate in the presence of n-3 LC-PUFA deficient vegetable oils enhanced intestinal chylomicron assembly, disturbed hepatic lipid metabolism and importantly elicited a higher response of key desaturase and elongase enzymes in the liver and intestine that endorsed our hypothesis. PPARγ was identified as the factor mediating this dietary regulation of fatty acid bioconversion enzymes in the liver. However, these molecular changes were not sufficient to modify the fatty acid composition of muscle or liver. Concerning the genotype effect, there was no evidence of substantial genotypic difference in lipid metabolism, LC-PUFA synthesis and flesh fatty acid profile when fed with vegetable oils. The minor reduction in plasma glucose and triglyceride levels in the F line was linked to potentially higher glucose and lipid uptake in the muscle. Overall, these data emphasize the importance of dietary macro-nutrient interface in evolving fish nutrition strategies.

  1. New model for gastroenteropancreatic large-cell neuroendocrine carcinoma: establishment of two clinically relevant cell lines.

    Directory of Open Access Journals (Sweden)

    Andreas Krieg

    Full Text Available Recently, a novel WHO-classification has been introduced that divided gastroenteropancreatic neuroendocrine neoplasms (GEP-NEN according to their proliferation index into G1- or G2-neuroendocrine tumors (NET and poorly differentiated small-cell or large-cell G3-neuroendocrine carcinomas (NEC. Our knowledge on primary NECs of the GEP-system is limited due to the rarity of these tumors and chemotherapeutic concepts of highly aggressive NEC do not provide convincing results. The aim of this study was to establish a reliable cell line model for NEC that could be helpful in identifying novel druggable molecular targets. Cell lines were established from liver (NEC-DUE1 or lymph node metastases (NEC-DUE2 from large cell NECs of the gastroesophageal junction and the large intestine, respectively. Morphological characteristics and expression of neuroendocrine markers were extensively analyzed. Chromosomal aberrations were mapped by array comparative genomic hybridization and DNA profiling was analyzed by DNA fingerprinting. In vitro and in vivo tumorigenicity was evaluated and the sensitivity against chemotherapeutic agents assessed. Both cell lines exhibited typical morphological and molecular features of large cell NEC. In vitro and in vivo experiments demonstrated that both cell lines retained their malignant properties. Whereas NEC-DUE1 and -DUE2 were resistant to chemotherapeutic drugs such as cisplatin, etoposide and oxaliplatin, a high sensitivity to 5-fluorouracil was observed for the NEC-DUE1 cell line. Taken together, we established and characterized the first GEP large-cell NEC cell lines that might serve as a helpful tool not only to understand the biology of these tumors, but also to establish novel targeted therapies in a preclinical setup.

  2. Line profile analyses of a martensitic steel during continuous and stepwise tensile deformations

    Science.gov (United States)

    Kawasaki, T.; Harjo, S.; Gong, W.; Aizawa, K.

    2016-09-01

    Dislocation characteristics in an as-quenched 22SiMn2TiB martensitic steel during tensile deformation were monitored by in-situ time-of-flight neutron diffraction combined with the Convolutional Multiple Whole Profile fitting analysis. Two loading conditions, continuous and stepwise followed by unloading, were adopted in the experiments. The diffraction patterns both in the loading (axial) and the transversal directions were measured simultaneously. The dislocation densities obtained from the experiments behaved differently in two loading conditions and in two measured directions, respectively. The different behaviour was mainly due to the increase of intergranular strains with the increase of deformation, and the profiles measured in the axial direction in the loading condition of stepwise followed by unloading gave most reliable dislocation characteristics among the profiles measured in other conditions.

  3. The inclusion of Duroc breed in maternal line affects pork quality and fatty acid profile.

    Science.gov (United States)

    Alonso, Verónica; Muela, Erica; Gutiérrez, Beatriz; Calanche, Juan Benito; Roncalés, Pedro; Beltrán, José A

    2015-09-01

    The aim of this study was to evaluate the effect of including different percentages of Duroc (D) breed in maternal line [Landrace (LR) × Large White (LW); LR × (LW × D); LR × D] and gender on meat quality and intramuscular (IMF) and subcutaneous (SCF) fatty acid composition. No significant differences were found among dam lines in ultimate pH, L* values and drip and cooking losses. There were higher percentages of saturated fatty acids in LR × D and LR × (LW × D) lines and higher percentages of polyunsaturated fatty acids in LR × LW line in IMF and SCF. Also, LR × D line produced pork with a lower Warner-Bratzler shear force values and higher IMF content and potential of lipid oxidation. Furthermore, the L*, a* and b* values and drip loss were greater in pork from entire males than females. The IMF and SCF of females were more monounsaturated and less polyunsaturated than those from entire males. Copyright © 2015 Elsevier Ltd. All rights reserved.

  4. Vison guidance of a laser profiler for monitoring refractory lining wear in steel mills

    Science.gov (United States)

    Ailisto, Heikki J.; Mitikka, Risto S.; Moring, Ilkka; Jokinen, Hannu

    1995-09-01

    A laser rangefinder-based optical coordinate measurement system used for monitoring refractory lining wear in steel mills has been equipped with a vision system to improve its operative and performance characteristics. The 3D shape of the refractory lining is measured after renewal at the beginning of a campaign and these data are stored as a reference. During the campaign the lining is measured and the results are compared against the reference data in order to minimize risks and optimize lining life. To make the results measured at different times comparable, they must be accurately and reliably transformed to the same coordinate system. This makes the coordinate system setup phase critical for the success of the lining wear monitoring. Other important aspects are the amount of expensive process time taken up by the measurements and work safety aspects. The experimental vision system has been tesetd for automating the corrdinate system setup phase, and improved repeatability and faster operation compared with manual setup was achieved. Tentative tests at a steel mill proved promising, and further development of the vision system is going on.

  5. Microarray profiling shows distinct differences between primary tumors and commonly used preclinical models in hepatocellular carcinoma

    International Nuclear Information System (INIS)

    Wang, Weining; Iyer, N. Gopalakrishna; Tay, Hsien Ts’ung; Wu, Yonghui; Lim, Tony K. H.; Zheng, Lin; Song, In Chin; Kwoh, Chee Keong; Huynh, Hung; Tan, Patrick O. B.; Chow, Pierce K. H.

    2015-01-01

    Despite advances in therapeutics, outcomes for hepatocellular carcinoma (HCC) remain poor and there is an urgent need for efficacious systemic therapy. Unfortunately, drugs that are successful in preclinical studies often fail in the clinical setting, and we hypothesize that this is due to functional differences between primary tumors and commonly used preclinical models. In this study, we attempt to answer this question by comparing tumor morphology and gene expression profiles between primary tumors, xenografts and HCC cell lines. Hep G2 cell lines and tumor cells from patient tumor explants were subcutaneously (ectopically) injected into the flank and orthotopically into liver parenchyma of Mus Musculus SCID mice. The mice were euthanized after two weeks. RNA was extracted from the tumors, and gene expression profiling was performed using the Gene Chip Human Genome U133 Plus 2.0. Principal component analyses (PCA) and construction of dendrograms were conducted using Partek genomics suite. PCA showed that the commonly used HepG2 cell line model and its xenograft counterparts were vastly different from all fresh primary tumors. Expression profiles of primary tumors were also significantly divergent from their counterpart patient-derived xenograft (PDX) models, regardless of the site of implantation. Xenografts from the same primary tumors were more likely to cluster together regardless of site of implantation, although heat maps showed distinct differences in gene expression profiles between orthotopic and ectopic models. The data presented here challenges the utility of routinely used preclinical models. Models using HepG2 were vastly different from primary tumors and PDXs, suggesting that this is not clinically representative. Surprisingly, site of implantation (orthotopic versus ectopic) resulted in limited impact on gene expression profiles, and in both scenarios xenografts differed significantly from the original primary tumors, challenging the long

  6. Lightning Surge Characteristics of an Actual Distribution Line and Validation of a Distribution Line Model for Lightning Overvoltage Studies

    Science.gov (United States)

    Matsuura, Susumu; Noda, Taku; Asakawa, Akira; Yokoyama, Shigeru

    For distribution lines in Japan, protection measures against lightning induced overvoltages have been taken and can be considered almost complete. The focus of lightning protection measures has moved to overvoltages due to direct lightning strokes. Studies of such overvoltages require simulations using the EMTP (Electro-Magnetic Transients Program), and components of a distribution line must be modeled appropriately in the EMTP simulation environment. The authors have proposed an EMTP model of a distribution line in a separate paper. This paper consists of two parts. The first part presents surge characteristics of a distribution line obtained by measurement using an actual-scale test distribution line. Especially, the result reveals noteworthy characteristics of the surge impedance of a reinforced concrete pole and the wavefront-time dependence of insulator voltages. The second part presents validation of the distribution line model previously proposed by the authors. The validation shows that the distribution line model accurately reproduces the measured voltage and current waveforms for various wavefront times of injected currents.

  7. Stochastic Higher Spin Vertex Models on the Line

    Science.gov (United States)

    Corwin, Ivan; Petrov, Leonid

    2016-04-01

    We introduce a four-parameter family of interacting particle systems on the line, which can be diagonalized explicitly via a complete set of Bethe ansatz eigenfunctions, and which enjoy certain Markov dualities. Using this, for the systems started in step initial data, we write down nested contour integral formulas for moments and Fredholm determinant formulas for Laplace-type transforms. Taking various choices or limits of parameters, this family degenerates to many of the known exactly solvable models in the Kardar-Parisi-Zhang universality class, as well as leads to many new examples of such models. In particular, asymmetric simple exclusion process, the stochastic six-vertex model, q-totally asymmetric simple exclusion process and various directed polymer models all arise in this manner. Our systems are constructed from stochastic versions of the R-matrix related to the six-vertex model. One of the key tools used here is the fusion of R-matrices and we provide a probabilistic proof of this procedure.

  8. PEP-II vacuum system pressure profile modeling using EXCEL

    International Nuclear Information System (INIS)

    Nordby, M.; Perkins, C.

    1994-06-01

    A generic, adaptable Microsoft EXCEL program to simulate molecular flow in beam line vacuum systems is introduced. Modeling using finite-element approximation of the governing differential equation is discussed, as well as error estimation and program capabilities. The ease of use and flexibility of the spreadsheet-based program is demonstrated. PEP-II vacuum system models are reviewed and compared with analytical models

  9. Gravel beaches nourishment: Modelling the equilibrium beach profile.

    Science.gov (United States)

    López, I; Aragonés, L; Villacampa, Y; Navarro-González, F J

    2018-04-01

    The erosion of the world's coasts and the shortage of sand to mitigate beach erosion are leading to the increasingly common use of gravel for coastal protection and beach nourishment. Therefore, in order to determine the amount of gravel required for such actions, it is important to know perfectly the equilibrium profile of gravel beaches. However, at present, this profile is obtained from formulas obtained mainly after channel tests, and therefore most of them do not adapt to the real profiles formed by gravel beaches in nature. In this article, 31 variables related to sedimentology, waves, morphology and marine vegetation present on the beaches are studied to determine which are the most influential in the profile. From the study carried out, it is obtained that these variables are the steepness and probability of occurrence of the wave perpendicular to the coast, the profile starting slope (between MWL and -2m), the energy reduction coefficient due to Posidonia oceanica as well as the width of the meadow. Using these variables, different numerical models were generated to predict accurately the gravel beach profile, which will lead to a saving in the volume of material used in the order of 1300m 3 /ml of beach with respect to current formulations, and a greater certainty that the beach nourishment carried out will have the desired effect. Copyright © 2017 Elsevier B.V. All rights reserved.

  10. Modification of SOL profiles and fluctuations with line-average density and divertor flux expansion in TCV

    Science.gov (United States)

    Vianello, N.; Tsui, C.; Theiler, C.; Allan, S.; Boedo, J.; Labit, B.; Reimerdes, H.; Verhaegh, K.; Vijvers, W. A. J.; Walkden, N.; Costea, S.; Kovacic, J.; Ionita, C.; Naulin, V.; Nielsen, A. H.; Rasmussen, J. Juul; Schneider, B.; Schrittwieser, R.; Spolaore, M.; Carralero, D.; Madsen, J.; Lipschultz, B.; Militello, F.; The TCV Team; The EUROfusion MST1 Team

    2017-11-01

    A set of Ohmic density ramp experiments addressing the role of parallel connection length in modifying scrape off layer (SOL) properties has been performed on the TCV tokamak. The parallel connection length has been modified by varying the poloidal flux expansion f x . It will be shown that this modification does not influence neither the detachment density threshold, nor the development of a flat SOL density profile which instead depends strongly on the increase of the core line average density. The modification of the SOL upstream profile, with the appearance of what is generally called a density shoulder, has been related to the properties of filamentary blobs. Blob size increases with density, without any dependence on the parallel connection length both in the near and far SOL. The increase of the density decay length, corresponding to a profile flattening, has been related to the variation of the divertor normalized collisionality Λ_div (Myra et al 2006 Phys. Plasmas 13 112502, Carralero et al, ASDEX Upgrade Team, JET Contributors and EUROfusion MST1 Team 2015 Phys. Rev. Let. 115 215002), showing that in TCV the increase of Λ_div is not sufficient to guarantee the SOL upstream profile flattening.

  11. PROFILES AND PREFERENCES OF ON-LINE MILLENIAL SHOPPERS IN BULGARIA

    OpenAIRE

    Patricia R. Loubeau; Robert Jantzen; Elitsa Alexander

    2014-01-01

    This research seeks to develop a better understanding of the factors affecting on-line purchasing behavior among Generation Y (Gen Y) consumers in Bulgaria. Also called millenials and born between the mid-1970s and late 1990s, this generation is especially active on-line and will be a dominant influence shaping e-commerce. An empirical study was conducted based on a written survey of a sample consisting of 367 high school and university students in Bulgaria. The most important reason why Bulg...

  12. Comparison of lung cancer cell lines representing four histopathological subtypes with gene expression profiling using quantitative real-time PCR

    Directory of Open Access Journals (Sweden)

    Kawaguchi Makoto

    2010-01-01

    Full Text Available Abstract Background Lung cancers are the most common type of human malignancy and are intractable. Lung cancers are generally classified into four histopathological subtypes: adenocarcinoma (AD, squamous cell carcinoma (SQ, large cell carcinoma (LC, and small cell carcinoma (SC. Molecular biological characterization of these subtypes has been performed mainly using DNA microarrays. In this study, we compared the gene expression profiles of these four subtypes using twelve human lung cancer cell lines and the more reliable quantitative real-time PCR (qPCR. Results We selected 100 genes from public DNA microarray data and examined them by DNA microarray analysis in eight test cell lines (A549, ABC-1, EBC-1, LK-2, LU65, LU99, STC 1, RERF-LC-MA and a normal control lung cell line (MRC-9. From this, we extracted 19 candidate genes. We quantified the expression of the 19 genes and a housekeeping gene, GAPDH, with qPCR, using the same eight cell lines plus four additional validation lung cancer cell lines (RERF-LC-MS, LC-1/sq, 86-2, and MS-1-L. Finally, we characterized the four subtypes of lung cancer cell lines using principal component analysis (PCA of gene expression profiling for 12 of the 19 genes (AMY2A, CDH1, FOXG1, IGSF3, ISL1, MALL, PLAU, RAB25, S100P, SLCO4A1, STMN1, and TGM2. The combined PCA and gene pathway analyses suggested that these genes were related to cell adhesion, growth, and invasion. S100P in AD cells and CDH1 in AD and SQ cells were identified as candidate markers of these lung cancer subtypes based on their upregulation and the results of PCA analysis. Immunohistochemistry for S100P and RAB25 was closely correlated to gene expression. Conclusions These results show that the four subtypes, represented by 12 lung cancer cell lines, were well characterized using qPCR and PCA for the 12 genes examined. Certain genes, in particular S100P and CDH1, may be especially important for distinguishing the different subtypes. Our results

  13. Estimating genetic parameters for fertility in dairy cows from in-line milk progesterone profiles

    NARCIS (Netherlands)

    Tenghe, A.M.M.; Bouwman, A.C.; Berglund, B.; Strandberg, E.; Blom, J.; Veerkamp, R.F.

    2015-01-01

    The aim of this study was to define endocrine fertility traits from in-line milk progesterone (P4) records and to estimate genetic parameters for these traits. Correlations of classical fertility (calving interval and calving to first service) and milk production traits with endocrine fertility

  14. On-Line Core Thermal-Hydraulic Model Improvement

    Energy Technology Data Exchange (ETDEWEB)

    In, Wang Kee; Chun, Tae Hyun; Oh, Dong Seok; Shin, Chang Hwan; Hwang, Dae Hyun; Seo, Kyung Won

    2007-02-15

    The objective of this project is to implement a fast-running 4-channel based code CETOP-D in an advanced reactor core protection calculator system(RCOPS). The part required for the on-line calculation of DNBR were extracted from the source of the CETOP-D code based on analysis of the CETOP-D code. The CETOP-D code was revised to maintain the input and output variables which are the same as in CPC DNBR module. Since the DNBR module performs a complex calculation, it is divided into sub-modules per major calculation step. The functional design requirements for the DNBR module is documented and the values of the database(DB) constants were decided. This project also developed a Fortran module(BEST) of the RCOPS Fortran Simulator and a computer code RCOPS-SDNBR to independently calculate DNBR. A test was also conducted to verify the functional design and DB of thermal-hydraulic model which is necessary to calculate the DNBR on-line in RCOPS. The DNBR margin is expected to increase by 2%-3% once the CETOP-D code is used to calculate the RCOPS DNBR. It should be noted that the final DNBR margin improvement could be determined in the future based on overall uncertainty analysis of the RCOPS.

  15. Evaluation of the Actuator Line Model with coarse resolutions

    Science.gov (United States)

    Draper, M.; Usera, G.

    2015-06-01

    The aim of the present paper is to evaluate the Actuator Line Model (ALM) in spatial resolutions coarser than what is generally recommended, also using larger time steps. To accomplish this, the ALM has been implemented in the open source code caffa3d.MBRi and validated against experimental measurements of two wind tunnel campaigns (stand alone wind turbine and two wind turbines in line, case A and B respectively), taking into account two spatial resolutions: R/8 and R/15 (R is the rotor radius). A sensitivity analysis in case A was performed in order to get some insight into the influence of the smearing factor (3D Gaussian distribution) and time step size in power and thrust, as well as in the wake, without applying a tip loss correction factor (TLCF), for one tip speed ratio (TSR). It is concluded that as the smearing factor is larger or time step size is smaller the power is increased, but the velocity deficit is not as much affected. From this analysis, a smearing factor was obtained in order to calculate precisely the power coefficient for that TSR without applying TLCF. Results with this approach were compared with another simulation choosing a larger smearing factor and applying Prandtl's TLCF, for three values of TSR. It is found that applying the TLCF improves the power estimation and weakens the influence of the smearing factor. Finally, these 2 alternatives were tested in case B, confirming that conclusion.

  16. A new tectonic model for the Cameroon Line, Central Africa

    Science.gov (United States)

    Moreau, C.; Regnoult, J.-M.; Déruelle, B.; Robineau, B.

    1987-10-01

    The Cameroon Line, a major geological feature in Central Africa, has been considered successively as a series of horsts and grabens, a continental rift and a mega-shear zone. It is marked out by about 60 anorogenic complexes and a dozen volcanic centres, all of which have alkaline affinity. Remote sensing allows us recognition of the main lineament trends: N70°, N-S, N135° and E-W, while autocorrelation analysis reveals a major fault zone striking N30° in western Cameroon and N15° in the northern region. A mega left-lateral shear zone is the model that best accounts for the fracture pattern and associated features such as linear and circular structures alignment of subvolcanic complexes, syntectonic leucogranites marking out older shear zones and vein dykes. The N70° Adamawa fault zone, a Pan-African fracture reworked during Albian-Aptian times, is the only shear zone of continental scale that could have initiated "en echelon" mega-tension gashes within the Cameroon Line during a Cainozoic left-lateral transcurrent movement.

  17. Genetic algorithm simulation for line shape spectroscopy

    International Nuclear Information System (INIS)

    Sun Ping; Pan Chuanhong; Cui Zhengying; Ding Xuantong; Wang Quanming

    2005-01-01

    Line shape spectroscopy is a valuable tool both for diagnostic, and for understanding the basic atomic processes in the boundary region of magnetically confined fusion plasmas. The D α line profiles are modeled with genetic algorithm. The modeling profiles are in good agreement with the line profiles obtained in experiment. The results of this analysis suggest that there are one population of hydrogen and three populations of deuterium with different temperatures and population ratios. (authors)

  18. Alterations in gene expression profiles correlated with cisplatin cytotoxicity in the glioma U343 cell line

    OpenAIRE

    Patricia Oliveira Carminati; Stephano Spano Mello; Ana Lucia Fachin; Cristina Moraes Junta; Paula Sandrin-Garcia; Carlos Gilberto Carlotti; Eduardo Antonio Donadi; Geraldo Aleixo Silva Passos; Elza Tiemi Sakamoto-Hojo

    2010-01-01

    Gliomas are the most common tumors in the central nervous system, the average survival time of patients with glioblastoma multiforme being about 1 year from diagnosis, in spite of harsh therapy. Aiming to study the transcriptional profiles displayed by glioma cells undergoing cisplatin treatment, gene expression analysis was performed by the cDNA microarray method. Cell survival and apoptosis induction following treatment were also evaluated. Drug concentrations of 12.5 to 300 μM caused ...

  19. MiRNA Profiles in Lymphoblastoid Cell Lines of Finnish Prostate Cancer Families.

    Directory of Open Access Journals (Sweden)

    Daniel Fischer

    Full Text Available Heritable factors are evidently involved in prostate cancer (PrCa carcinogenesis, but currently, genetic markers are not routinely used in screening or diagnostics of the disease. More precise information is needed for making treatment decisions to distinguish aggressive cases from indolent disease, for which heritable factors could be a useful tool. The genetic makeup of PrCa has only recently begun to be unravelled through large-scale genome-wide association studies (GWAS. The thus far identified Single Nucleotide Polymorphisms (SNPs explain, however, only a fraction of familial clustering. Moreover, the known risk SNPs are not associated with the clinical outcome of the disease, such as aggressive or metastasised disease, and therefore cannot be used to predict the prognosis. Annotating the SNPs with deep clinical data together with miRNA expression profiles can improve the understanding of the underlying mechanisms of different phenotypes of prostate cancer.In this study microRNA (miRNA profiles were studied as potential biomarkers to predict the disease outcome. The study subjects were from Finnish high risk prostate cancer families. To identify potential biomarkers we combined a novel non-parametrical test with an importance measure provided from a Random Forest classifier. This combination delivered a set of nine miRNAs that was able to separate cases from controls. The detected miRNA expression profiles could predict the development of the disease years before the actual PrCa diagnosis or detect the existence of other cancers in the studied individuals. Furthermore, using an expression Quantitative Trait Loci (eQTL analysis, regulatory SNPs for miRNA miR-483-3p that were also directly associated with PrCa were found.Based on our findings, we suggest that blood-based miRNA expression profiling can be used in the diagnosis and maybe even prognosis of the disease. In the future, miRNA profiling could possibly be used in targeted screening

  20. Deep seismic reflection profiling in the Swiss Alps: Explosion seismology results for line NFP 20-East

    Science.gov (United States)

    Pfiffner, 0. A.; Frei, W.; Finckh, P.; Valasek, P.

    1988-11-01

    In September 1986, a 120-km-long seismic line was recorded through the Swiss Alps. The line traverses major units involved in thin- and thick-skinned Alpine tectonics. Our preliminary interpretation indicates that (1) lithologic boundaries such as basement-cover contacts, although severely deformed during the Alpine orogeny, can be identified on the seismic sections; (2) the top of the Aar massif, an external basement massif, extends deep into the Alpine orogen; (3) the upper and lower parts of the crust are more or less transparent, but are separated by a swarm of reflectors at mid-crustal level; (4) these mid-crustal reflectors might be related to trapped fluids from Alpine metamorphism; and (5) the Moho appears as a bright reflection that steepens from the north toward the south and terminates abruptly near the center of the Alpine chain, perhaps because of Alpine deformation.

  1. Soil N mineralization profiles of co-existing woody vegetation islands at the alpine tree line

    Czech Academy of Sciences Publication Activity Database

    Wang, L.; Godbold, Douglas

    2017-01-01

    Roč. 136, 5-6 (2017), s. 881-892 ISSN 1612-4669 R&D Projects: GA MŠk(CZ) LO1415 Institutional support: RVO:67179843 Keywords : Tree line * Soil N mineralization * in situ field incubation * Soil N availability * Resin capsule * Woody vegetation islands Subject RIV: DF - Soil Science OBOR OECD: Soil science Impact factor: 2.017, year: 2016

  2. Investigation and modeling of CPL mask profiles using OCD

    Science.gov (United States)

    Chen, Hsuan-Chen; Lin, Ren-Hao; Chen, Chien-Cheng; Huang, Cheng-Hsuan; Lien, Ta-Cheng; Chen, Chia-Jen; Lee, Gaston; Lee, Hsin-Chang; Yen, Anthony

    2016-05-01

    Mask profile of chromeless phase-shifting lithography (CPL) defined by OCD has been investigated. In CPL masks, unbalanced bombardments caused by different ion accelerations lead to the formation of micro-notch structures. A better understanding of micro-notch structures is essential for quality gating of mask processes to improve of CPL mask profiles. By measuring 12 of 16 elements of Mueller matrix, we are able to set up a model to simulate the depth of micro-notch structure profile which shows good correlation with TEM images. Moreover, values of CD, quartz etching depth and side wall angle acquired by OCD are presented and compared with those obtained by SEM, TEM and AFM, respectively.

  3. Performance Analysis of GFDL's GCM Line-By-Line Radiative Transfer Model on GPU and MIC Architectures

    Science.gov (United States)

    Menzel, R.; Paynter, D.; Jones, A. L.

    2017-12-01

    Due to their relatively low computational cost, radiative transfer models in global climate models (GCMs) run on traditional CPU architectures generally consist of shortwave and longwave parameterizations over a small number of wavelength bands. With the rise of newer GPU and MIC architectures, however, the performance of high resolution line-by-line radiative transfer models may soon approach those of the physical parameterizations currently employed in GCMs. Here we present an analysis of the current performance of a new line-by-line radiative transfer model currently under development at GFDL. Although originally designed to specifically exploit GPU architectures through the use of CUDA, the radiative transfer model has recently been extended to include OpenMP in an effort to also effectively target MIC architectures such as Intel's Xeon Phi. Using input data provided by the upcoming Radiative Forcing Model Intercomparison Project (RFMIP, as part of CMIP 6), we compare model results and performance data for various model configurations and spectral resolutions run on both GPU and Intel Knights Landing architectures to analogous runs of the standard Oxford Reference Forward Model on traditional CPUs.

  4. De novo-based transcriptome profiling of male-sterile and fertile watermelon lines.

    Science.gov (United States)

    Rhee, Sun-Ju; Kwon, Taehyung; Seo, Minseok; Jang, Yoon Jeong; Sim, Tae Yong; Cho, Seoae; Han, Sang-Wook; Lee, Gung Pyo

    2017-01-01

    The whole-genome sequence of watermelon (Citrullus lanatus (Thunb.) Matsum. & Nakai), a valuable horticultural crop worldwide, was released in 2013. Here, we compared a de novo-based approach (DBA) to a reference-based approach (RBA) using RNA-seq data, to aid in efforts to improve the annotation of the watermelon reference genome and to obtain biological insight into male-sterility in watermelon. We applied these techniques to available data from two watermelon lines: the male-sterile line DAH3615-MS and the male-fertile line DAH3615. Using DBA, we newly annotated 855 watermelon transcripts, and found gene functional clusters predicted to be related to stimulus responses, nucleic acid binding, transmembrane transport, homeostasis, and Golgi/vesicles. Among the DBA-annotated transcripts, 138 de novo-exclusive differentially-expressed genes (DEDEGs) related to male sterility were detected. Out of 33 randomly selected newly annotated transcripts and DEDEGs, 32 were validated by RT-qPCR. This study demonstrates the usefulness and reliability of the de novo transcriptome assembly in watermelon, and provides new insights for researchers exploring transcriptional blueprints with regard to the male sterility.

  5. A Business Maturity Model of Software Product Line Engineering

    OpenAIRE

    Ahmed, Faheem; Capretz, Luiz Fernando

    2015-01-01

    In the recent past, software product line engineering has become one of the most promising practices in software industry with the potential to substantially increase the software development productivity. Software product line engineering approach spans the dimensions of business, architecture, software engineering process and organization. The increasing popularity of software product line engineering in the software industry necessitates a process maturity evaluation methodology. According...

  6. Psychological profiling of sexual murders: an empirical model.

    Science.gov (United States)

    Kocsis, Richard N; Cooksey, Ray W; Irwin, Harvey J

    2002-10-01

    Psychological profiling represents the investigative technique of analyzing crime behaviors for the identification of probable offender characteristics. Profiling has progressively been incorporated into police procedures despite a surprising lack of empirical research to support its validity. Indeed, in the study of sexual murder for the purpose of profiling, very few quantitative, academically reviewed studies exist. This article reports on the results of a 4-year study into Australian sexual murders for the development of psychological profiling. The study involved 85 cases of sexual murder sampled from all Australian police jurisdictions. The statistical procedure of multidimensional scaling was employed. This analysis produced a five-cluster model of sexual murder behavior. First, a central cluster of behaviors was identified that represents common behaviors to all patterns of sexual murder. Next, four distinct outlying patterns--predator, fury, perversion, and rape--were identified that each demonstrated distinct offense styles. Further analysis of these patterns also identified distinct offender characteristics that allow for the use of empirically robust offender profiles in future sexual murder investigations.

  7. Correlation of antinuclear antibody immunofluorescence patterns with immune profile using line immunoassay in the Indian scenario

    Directory of Open Access Journals (Sweden)

    Sebastian Wendy

    2010-07-01

    Full Text Available Background: Immunity status, individual response to disease and types of antibodies produced are well known to vary from person to person, place to place and probably from population to population. A broad spectrum of specific auto antibodies that have so far been associated with specific rheumatic diseases, as noted in Western literature, has been well taken as a reference standard all over the world. There is neither research work nor any data correlating the auto antibodies and their antinuclear antibody (ANA patterns with the immunoprofile in the Indian population to date. Aims: To understand a definite association between ANA patterns and specific antibodies in the serum in the Indian study population and to document similarities / differences with the West. Settings and Design: This prospective and retrospective double blind study was undertaken on the South Indian population referred for ANA testing by Indirect Immunofluorescence method and by immunoline methods. Materials and Methods: Serum samples of patients from a random South Indian population who sought medical help for rheumatic disease were subjected for ANA testing by indirect immunofluorescence (IIF method and line immunoassay during the study period of 27 months. Serum samples were processed in dilution of 1:100 using HEp - 2010 / liver biochip (Monkey (EUROIMMUN AG. The serum samples which were further processed for line immunoassay were treated in 1:100 dilution on nylon strips coated with recombinant and purified antigens as discrete lines with plastic backing (EUROIMMUN AG coated with antigens nRNP / Sm, Sm, SSA, Ro-52, SSB, Scl-70, PM-Scl, PCNA, Jo-1, CENP-B, dsDNA, nucleosomes, histones, ribosomal protein-P, anti-mitochondrial antibodies (AMA-M2 along with a control band. The analysis was done by comparing the intensity of the reaction with positive control line by image analysis. Results: The antinuclear antibody indirect immunofluorescence (ANA - IIF patterns obtained

  8. Water in star-forming regions with Herschel (WISH) : IV. A survey of low-J H2O line profiles toward high-mass protostars

    NARCIS (Netherlands)

    van der Tak, F. F. S.; Chavarria, L.; Herpin, F.; Wyrowski, F.; Walmsley, C. M.; van Dishoeck, E. F.; Benz, A. O.; Bergin, E. A.; Caselli, P.; Hogerheijde, M. R.; Johnstone, D.; Kristensen, L. E.; Liseau, R.; Nisini, B.; Tafalla, M.

    Context. Water is a key constituent of star-forming matter, but the origin of its line emission and absorption during high-mass star formation is not well understood. Aims. We study the velocity profiles of low-excitation H2O lines toward 19 high-mass star-forming regions and search for trends with

  9. Quantitative Analysis of Probabilistic Models of Software Product Lines with Statistical Model Checking

    DEFF Research Database (Denmark)

    ter Beek, Maurice H.; Legay, Axel; Lluch Lafuente, Alberto

    2015-01-01

    We investigate the suitability of statistical model checking techniques for analysing quantitative properties of software product line models with probabilistic aspects. For this purpose, we enrich the feature-oriented language FLAN with action rates, which specify the likelihood of exhibiting...... particular behaviour or of installing features at a specific moment or in a specific order. The enriched language (called PFLAN) allows us to specify models of software product lines with probabilistic configurations and behaviour, e.g. by considering a PFLAN semantics based on discrete-time Markov chains....... The Maude implementation of PFLAN is combined with the distributed statistical model checker MultiVeStA to perform quantitative analyses of a simple product line case study. The presented analyses include the likelihood of certain behaviour of interest (e.g. product malfunctioning) and the expected average...

  10. Quantitative Analysis of Probabilistic Models of Software Product Lines with Statistical Model Checking

    Directory of Open Access Journals (Sweden)

    Maurice H. ter Beek

    2015-04-01

    Full Text Available We investigate the suitability of statistical model checking techniques for analysing quantitative properties of software product line models with probabilistic aspects. For this purpose, we enrich the feature-oriented language FLan with action rates, which specify the likelihood of exhibiting particular behaviour or of installing features at a specific moment or in a specific order. The enriched language (called PFLan allows us to specify models of software product lines with probabilistic configurations and behaviour, e.g. by considering a PFLan semantics based on discrete-time Markov chains. The Maude implementation of PFLan is combined with the distributed statistical model checker MultiVeStA to perform quantitative analyses of a simple product line case study. The presented analyses include the likelihood of certain behaviour of interest (e.g. product malfunctioning and the expected average cost of products.

  11. Line profiles of water for the photon dominated region and embedded sources in the S140 region

    NARCIS (Netherlands)

    Poelman, D. R.; Spaans, M.

    H(2)O is a key ingredient in many interstellar environments, like photon dominated regions and star forming clouds. It plays an important role in the oxygen chemistry and can act as a coolant in dense interstellar clouds and shocks. Observations and modelling of water lines thus provide powerful

  12. Accumulation Profiles of Embryonic Salt-Soluble Proteins in Maize Hybrids and Parental Lines Indicate Matroclinous Inheritance: A Proteomic Analysis

    Directory of Open Access Journals (Sweden)

    Fen Ning

    2017-10-01

    Full Text Available Maize is one of the most widely cultivated crops. It accumulates a large quantity of seed storage proteins, which are important for seed development and germination, and contribute to the nutritional quality of seeds. Based on solubility, the storage proteins are divided into albumins (water-soluble, globulins (salt-soluble, prolamins (alcohol-soluble, and glutelins (acid- or alkali-soluble. Maize hybrids are cultivated due to the superior performance of F1 hybrids than that of their parents, a phenomenon known as heterosis. However, the accumulation patterns of seed storage proteins in maize embryos between the hybrids and their parental inbred lines have not been compared. In the present study, two elite inbred lines of China, Zheng 58 and Chang 7-2, and their reciprocal hybrids (Zheng 58 × Chang 7-2 and Chang 7-2 × Zheng 58 were used to explore parental influences on the accumulation patterns of seed storage proteins in maize embryos. For this purpose, we focused on seed salt-soluble proteins (SSPs in our experiments. The SSPs were selectively extracted from maize mature embryos after extensive removal of water-soluble albumin and separated using two-dimensional gel electrophoresis (2-DE, followed by mass spectrometry analysis. Our results indicated that the 2-DE SSP profiles of hybrids closely resembled those of their maternal parent rather than the paternal parent. In other words, 2-DE SSP profiles of Zheng 58 × Chang 7-2 were more similar those of Zheng 58 whereas such profiles of Chang 7-2 × Zheng 58 were more similar to those of Chang 7-2 although the 2-DE profiles of all four maize types were quite similar. In total, 12 relatively abundant SSPs spots representing five kinds of proteins were identified, of which nine protein spots displayed non-additive accumulation in at least one hybrid. This study provided additional data on dominance and partial dominance effects on maize hybrids embryos. Besides, earlier studies on accumulation

  13. Modification of SOL profiles and fluctuations with line-average density and divertor flux expansion in TCV

    DEFF Research Database (Denmark)

    Vianello, N.; Tsui, C.; Theiler, C.

    2017-01-01

    A set of Ohmic density ramp experiments addressing the role of parallel connection length in modifying scrape off layer (SOL) properties has been performed on the TCV tokamak. The parallel connection length has been modified by varying the poloidal flux expansion fx. It will be shown that this mo......A set of Ohmic density ramp experiments addressing the role of parallel connection length in modifying scrape off layer (SOL) properties has been performed on the TCV tokamak. The parallel connection length has been modified by varying the poloidal flux expansion fx. It will be shown...... that this modification does not influence neither the detachment density threshold, nor the development of a flat SOL density profile which instead depends strongly on the increase of the core line average density. The modification of the SOL upstream profile, with the appearance of what is generally called a density...... shoulder, has been related to the properties of filamentary blobs. Blob size increases with density, without any dependence on the parallel connection length both in the near and far SOL. The increase of the density decay length, corresponding to a profile flattening, has been related to the variation...

  14. Atmospheric profiling via satellite to satellite occultations near water and ozone absorption lines for weather and climate

    Science.gov (United States)

    Kursinski, E. R.; Ward, D.; Otarola, A. C.; McGhee, J.; Stovern, M.; Sammler, K.; Reed, H.; Erickson, D.; McCormick, C.; Griggs, E.

    2016-05-01

    Significantly reducing weather and climate prediction uncertainty requires global observations with substantially higher information content than present observations provide. While GPS occultations have provided a major advance, GPS observations of the atmosphere are limited by wavelengths chosen specifically to minimize interaction with the atmosphere. Significantly more information can be obtained via satellite to satellite occultations made at wavelengths chosen specifically to characterize the atmosphere. Here we describe such a system that will probe cm- and mmwavelength water vapor absorption lines called the Active Temperature, Ozone and Moisture Microwave Spectrometer (ATOMMS). Profiling both the speed and absorption of light enables ATOMMS to profile temperature, pressure and humidity simultaneously, which GPS occultations cannot do, as well as profile clouds and turbulence. We summarize the ATOMMS concept and its theoretical performance. We describe field measurements made with a prototype ATOMMS instrument and several important capabilities demonstrated with those ground based measurements including retrieving temporal variations in path-averaged water vapor to 1%, in clear, cloudy and rainy conditions, up to optical depths of 17, remotely sensing turbulence and determining rain rates. We conclude with a vision of a future ATOMMS low Earth orbiting satellite constellation designed to take advantage of synergies between observational needs for weather and climate, ATOMMS unprecedented orbital remote sensing capabilities and recent cubesat technological innovations that enable a constellation of dozens of very small spacecraft to achieve many critical, but as yet unfulfilled, monitoring and forecasting needs.

  15. A constraint programming model for mixed model type 2 assembly line balancing problem

    Directory of Open Access Journals (Sweden)

    Hacı Mehmet Alağaş

    2016-08-01

    Full Text Available This paper presents a new constraint programming model for mixed-model assembly line balancing problem. The proposed model minimizes the cycle time for a given number of stations. The proposed model is tested with literature problems and its performance is evaluated by comparing to mathematical model. Best obtained solution and elapsed CPU time are used as performance criteria. The experimental results show that the proposed constraint programming model performs well and can be used as an alternative modeling technique to solve the problem.

  16. CORRECTION OF FAULTY LINES IN MUSCLE MODEL, TO BE USED IN 3D BUILDING NETWORK CONSTRUCTION

    Directory of Open Access Journals (Sweden)

    I. R. Karas

    2012-07-01

    Full Text Available This paper describes the usage of MUSCLE (Multidirectional Scanning for Line Extraction Model for automatic generation of 3D networks in CityGML format (from raster floor plans. MUSCLE (Multidirectional Scanning for Line Extraction Model is a conversion method which was developed to vectorize the straight lines through the raster images including floor plans, maps for GIS, architectural drawings, and machine plans. The model allows user to define specific criteria which are crucial for acquiring the vectorization process. Unlike traditional vectorization process, this model generates straight lines based on a line thinning algorithm, without performing line following-chain coding and vector reduction stages. In this method the nearly vertical lines were obtained by scanning the images horizontally, while the nearly horizontal lines were obtained by scanning the images vertically. In a case where two or more consecutive lines are nearly horizontal or nearly vertical, raster data become unmanageable and the process generates wrongly vectorized lines. In this situation, to obtain the precise lines, the image with the wrongly vectorized lines is diagonally scanned. By using MUSCLE model, the network models are topologically structured in CityGML format. After the generation process, it is possible to perform 3D network analysis based on these models. Then, by using the software that was designed based on the generated models, a geodatabase of the models could be established. This paper presents the correction application in MUSCLE and explains 3D network construction in detail.

  17. Suppression subtractive hybridization profiles of radial growth phase and metastatic melanoma cell lines reveal novel potential targets

    Directory of Open Access Journals (Sweden)

    Espreafico Enilza M

    2008-01-01

    Full Text Available Abstract Background Melanoma progression occurs through three major stages: radial growth phase (RGP, confined to the epidermis; vertical growth phase (VGP, when the tumor has invaded into the dermis; and metastasis. In this work, we used suppression subtractive hybridization (SSH to investigate the molecular signature of melanoma progression, by comparing a group of metastatic cell lines with an RGP-like cell line showing characteristics of early neoplastic lesions including expression of the metastasis suppressor KISS1, lack of αvβ3-integrin and low levels of RHOC. Methods Two subtracted cDNA collections were obtained, one (RGP library by subtracting the RGP cell line (WM1552C cDNA from a cDNA pool from four metastatic cell lines (WM9, WM852, 1205Lu and WM1617, and the other (Met library by the reverse subtraction. Clones were sequenced and annotated, and expression validation was done by Northern blot and RT-PCR. Gene Ontology annotation and searches in large-scale melanoma expression studies were done for the genes identified. Results We identified 367 clones from the RGP library and 386 from the Met library, of which 351 and 368, respectively, match human mRNA sequences, representing 288 and 217 annotated genes. We confirmed the differential expression of all genes selected for validation. In the Met library, we found an enrichment of genes in the growth factors/receptor, adhesion and motility categories whereas in the RGP library, enriched categories were nucleotide biosynthesis, DNA packing/repair, and macromolecular/vesicular trafficking. Interestingly, 19% of the genes from the RGP library map to chromosome 1 against 4% of the ones from Met library. Conclusion This study identifies two populations of genes differentially expressed between melanoma cell lines from two tumor stages and suggests that these sets of genes represent profiles of less aggressive versus metastatic melanomas. A search for expression profiles of melanoma in

  18. Suppression subtractive hybridization profiles of radial growth phase and metastatic melanoma cell lines reveal novel potential targets

    International Nuclear Information System (INIS)

    Sousa, Josane F; Espreafico, Enilza M

    2008-01-01

    Melanoma progression occurs through three major stages: radial growth phase (RGP), confined to the epidermis; vertical growth phase (VGP), when the tumor has invaded into the dermis; and metastasis. In this work, we used suppression subtractive hybridization (SSH) to investigate the molecular signature of melanoma progression, by comparing a group of metastatic cell lines with an RGP-like cell line showing characteristics of early neoplastic lesions including expression of the metastasis suppressor KISS1, lack of αvβ3-integrin and low levels of RHOC. Two subtracted cDNA collections were obtained, one (RGP library) by subtracting the RGP cell line (WM1552C) cDNA from a cDNA pool from four metastatic cell lines (WM9, WM852, 1205Lu and WM1617), and the other (Met library) by the reverse subtraction. Clones were sequenced and annotated, and expression validation was done by Northern blot and RT-PCR. Gene Ontology annotation and searches in large-scale melanoma expression studies were done for the genes identified. We identified 367 clones from the RGP library and 386 from the Met library, of which 351 and 368, respectively, match human mRNA sequences, representing 288 and 217 annotated genes. We confirmed the differential expression of all genes selected for validation. In the Met library, we found an enrichment of genes in the growth factors/receptor, adhesion and motility categories whereas in the RGP library, enriched categories were nucleotide biosynthesis, DNA packing/repair, and macromolecular/vesicular trafficking. Interestingly, 19% of the genes from the RGP library map to chromosome 1 against 4% of the ones from Met library. This study identifies two populations of genes differentially expressed between melanoma cell lines from two tumor stages and suggests that these sets of genes represent profiles of less aggressive versus metastatic melanomas. A search for expression profiles of melanoma in available expression study databases allowed us to point to a

  19. Expansion of Collisional Radiative Model for Helium line ratio spectroscopy

    Science.gov (United States)

    Cinquegrani, David; Cooper, Chris; Forest, Cary; Milhone, Jason; Munoz-Borges, Jorge; Schmitz, Oliver; Unterberg, Ezekial

    2015-11-01

    Helium line ratio spectroscopy is a powerful technique of active plasma edge spectroscopy. It enables reconstruction of plasma edge parameters like electron density and temperature by use of suitable Collisional Radiative Models (CRM). An established approach is successful at moderate plasma densities (~1018m-3 range) and temperature (30-300eV), taking recombination and charge exchange to be negligible. The goal of this work is to experimentally explore limitations of this approach to CRM. For basic validation the Madison Plasma Dynamo eXperiment (MPDX) will be used. MPDX offers a very uniform plasma and spherical symmetry at low temperature (5-20 eV) and low density (1016 -1017m-3) . Initial data from MPDX shows a deviation in CRM results when compared to Langmuir probe data. This discrepancy points to the importance of recombination effects. The validated model is applied to first time measurement of electron density and temperature in front of an ICRH antenna at the TEXTOR tokamak. These measurements are important to understand RF coupling and PMI physics at the antenna limiters. Work supported in part by start up funds of the Department of Engineering Physics at the UW - Madison, USA and NSF CAREER award PHY-1455210.

  20. Further Examining Berry’s Model: The Applicability of Latent Profile Analysis to Acculturation

    Science.gov (United States)

    Fox, Rina S.; Merz, Erin L.; Solórzano, Martha T.; Roesch, Scott C.

    2017-01-01

    This study used latent profile analysis (LPA) to identify acculturation profiles. A 3-profile solution fit the data best, and comparisons on demographic and psychosocial outcomes as a function of profile yielded expected results. The findings support using LPA as a parsimonious way to model acculturation without anticipating profiles in advance. PMID:28819336

  1. Further Examining Berry's Model: The Applicability of Latent Profile Analysis to Acculturation

    Science.gov (United States)

    Fox, Rina S.; Merz, Erin L.; Solórzano, Martha T.; Roesch, Scott C.

    2013-01-01

    This study used latent profile analysis (LPA) to identify acculturation profiles. A three-profile solution fit the data best, and comparisons on demographic and psychosocial outcomes as a function of profile yielded expected results. The findings support using LPA as a parsimonious way to model acculturation without anticipating profiles in…

  2. MODELLING AND VIBRATION ANALYSIS OF A ROAD PROFILE MEASURING SYSTEM

    Directory of Open Access Journals (Sweden)

    C. B. Patel

    2010-06-01

    Full Text Available During a vehicle development program, load data representing severe customer usage is required. The dilemma faced by a design engineer during the design process is that during the initial stage, only predicted loads estimated from historical targets are available, whereas the actual loads are available only at the fag end of the process. At the same time, changes required, if any, are easier and inexpensive during the initial stages of the design process whereas they are extremely costly in the latter stages of the process. The use of road profiles and vehicle models to predict the load acting on the whole vehicle is currently being researched. This work hinges on the ability to accurately measure road profiles. The objective of the work is to develop an algorithm, using MATLAB Simulink software, to convert the input signals into measured road profile. The algorithm is checked by the MATLAB Simulink 4 degrees of freedom half car model. To make the whole Simulink model more realistic, accelerometer and laser sensor properties are introduced. The present work contains the simulation of the mentioned algorithm with a half car model and studies the results in distance, time, and the frequency domain.

  3. Altered Baseline and Nicotine-Mediated Behavioral and Cholinergic Profiles in ChAT-Cre Mouse Lines.

    Science.gov (United States)

    Chen, Edison; Lallai, Valeria; Sherafat, Yasmine; Grimes, Nickolas P; Pushkin, Anna N; Fowler, J P; Fowler, Christie D

    2018-02-28

    baseline and/or nicotine-mediated behavioral profiles were discovered in transgenic mice from the ChAT (BAC) -Cre and ChAT (IRES) -Cre lines. Given that these cre-expressing mice have become increasingly used by the scientific community, either independently with chemicogenetic and optogenetic viral vectors or crossed with other transgenic lines, the current studies highlight important considerations for the interpretation of data from previous and future experimental investigations. Moreover, the current findings detail the behavioral effects of either increased or decreased baseline cholinergic signaling mechanisms on locomotor, anxiety, learning/memory, and intravenous nicotine self-administration behaviors. Copyright © 2018 the authors 0270-6474/18/382177-12$15.00/0.

  4. Profiling polyphenols of two diploid strawberry (Fragaria vesca) inbred lines using UHPLC-HRMS(n.).

    Science.gov (United States)

    Sun, Jianghao; Liu, Xianjin; Yang, Tianbao; Slovin, Janet; Chen, Pei

    2014-03-01

    Phenolic compounds in the fruits of two diploid strawberries (Fragaria vesca f. semperflorens) inbred lines-Ruegen F7-4 (a red-fruited genotype) and YW5AF7 (a yellow-fruited genotype) were characterised using ultra-high-performance liquid chromatography coupled with tandem high-resolution mass spectrometry (UHPLC-HRMS(n)). The changes of anthocyanin composition during fruit development and between Ruegen F7-4 and YW5AF7 were studied. About 67 phenolic compounds, including taxifolin 3-O-arabinoside, glycosides of quercetin, kaempferol, cyanidin, pelargonidin, peonidin, ellagic acid derivatives, and other flavonols were identified in these two inbred lines. Compared to the regular octoploid strawberry, unique phenolic compounds were found in F. vesca fruits, such as taxifolin 3-O-arabinoside (both) and peonidin 3-O-malonylglucoside (Ruegen F7-4). The results provide the basis for comparative analysis of polyphenolic compounds in yellow and red diploid strawberries, as well as with the cultivated octoploid strawberries. Published by Elsevier Ltd.

  5. A model based method for obtaining the open/closed field line boundary from the cusp auroral 6300 Å[OI] red line

    Science.gov (United States)

    Johnsen, M. G.; Lorentzen, D. A.; Holmes, J. M.; Løvhaug, U. P.

    2012-03-01

    Ground based optical instruments are invaluable tools for studies of processes associated with the cusps and auroral morphology. In this work we present a method for obtaining the magnetic latitude of the open/closed field line boundary (OCB) from the cusp 6300 Å[OI] auroral red line using a meridian scanning photometer. The method which is based on a pre-defined reference cusp aurora produced by the GLOW model is examined with respect to uncertainties, and we describe how a set of equations describing the error is constructed. The method is applicable to data from optical instruments located at high latitude observation sites such as Svalbard and Antarctica. Equations describing both errors and the mapping altitude for transforming the OCB from instrument centered coordinates to magnetic latitude for instrumentation located in Svalbard (Longyearbyen) are presented. Further, by applying the GLOW model we present results illustrating the great variability in the altitude profile of the atomic oxygen 6300 Å[OI] red line emission in the cusp. A simple calculation showing how a poleward neutral wind will change the latitudinal shape of the cusp aurora is also performed.

  6. Velocity profiles in idealized model of human respiratory tract

    Directory of Open Access Journals (Sweden)

    Jicha M.

    2013-04-01

    Full Text Available This article deals with numerical simulation focused on velocity profiles in idealized model of human upper airways during steady inspiration. Three r gimes of breathing were investigated: Resting condition, Deep breathing and Light activity which correspond to most common regimes used for experiments and simulations. Calculation was validated with experimental data given by Phase Doppler Anemometry performed on the model with same geometry. This comparison was made in multiple points which form one cross-section in trachea near first bifurcation of bronchial tree. Development of velocity profile in trachea during steady inspiration was discussed with respect for common phenomenon formed in trachea and for future research of transport of aerosol particles in human respiratory tract.

  7. High intensity beam profile monitors for the LAMPF primary beam lines

    International Nuclear Information System (INIS)

    Hoffman, E.W.; Macek, R.J.; van Dyck, O.; Lee, D.; Harvey, A.; Bridge, J.; Cainet, J.

    1979-01-01

    Two types of beam profile monitors are in use at LAMPF to measure the properties of the 800 MeV, 500 μA proton beam external to the linac. Both types use secondary electron emission from a wire to produce a current signal proportional to the amount of proton beam that intercepts the wire. The wire scanner system uses a pair of orthogonal wires which are passed through the beam and the harp system uses two fixed planes of parallel wires. Most of the harps are not retractable and are exposed continuously to the primary beam. The high beam intensities available lead to a number of technical problems for instruments that intercept the beam or are close to primary beam targets. The thermal, electrical, radiation-damage, and material selection problems encountered, and some solutions which have been implemented are discussed

  8. Clustering disaggregated load profiles using a Dirichlet process mixture model

    International Nuclear Information System (INIS)

    Granell, Ramon; Axon, Colin J.; Wallom, David C.H.

    2015-01-01

    Highlights: • We show that the Dirichlet process mixture model is scaleable. • Our model does not require the number of clusters as an input. • Our model creates clusters only by the features of the demand profiles. • We have used both residential and commercial data sets. - Abstract: The increasing availability of substantial quantities of power-use data in both the residential and commercial sectors raises the possibility of mining the data to the advantage of both consumers and network operations. We present a Bayesian non-parametric model to cluster load profiles from households and business premises. Evaluators show that our model performs as well as other popular clustering methods, but unlike most other methods it does not require the number of clusters to be predetermined by the user. We used the so-called ‘Chinese restaurant process’ method to solve the model, making use of the Dirichlet-multinomial distribution. The number of clusters grew logarithmically with the quantity of data, making the technique suitable for scaling to large data sets. We were able to show that the model could distinguish features such as the nationality, household size, and type of dwelling between the cluster memberships

  9. Modeling of Aerosol Vertical Profiles Using GIS and Remote Sensing

    Directory of Open Access Journals (Sweden)

    Kwon Ho Lee

    2009-06-01

    Full Text Available The use of Geographic Information Systems (GIS and Remote Sensing (RS by climatologists, environmentalists and urban planners for three dimensional modeling and visualization of the landscape is well established. However no previous study has implemented these techniques for 3D modeling of atmospheric aerosols because air quality data is traditionally measured at ground points, or from satellite images, with no vertical dimension. This study presents a prototype for modeling and visualizing aerosol vertical profiles over a 3D urban landscape in Hong Kong. The method uses a newly developed technique for the derivation of aerosol vertical profiles from AERONET sunphotometer measurements and surface visibility data, and links these to a 3D urban model. This permits automated modeling and visualization of aerosol concentrations at different atmospheric levels over the urban landscape in near-real time. Since the GIS platform permits presentation of the aerosol vertical distribution in 3D, it can be related to the built environment of the city. Examples are given of the applications of the model, including diagnosis of the relative contribution of vehicle emissions to pollution levels in the city, based on increased near-surface concentrations around weekday rush-hour times. The ability to model changes in air quality and visibility from ground level to the top of tall buildings is also demonstrated, and this has implications for energy use and environmental policies for the tall mega-cities of the future.

  10. Challenges in Model Development for Meat Composition Using Multipoint NIR Spectroscopy from At-Line to In-Line Monitoring.

    Science.gov (United States)

    Dixit, Y; Casado-Gavalda, Maria P; Cama-Moncunill, R; Cullen, P J; Sullivan, Carl

    2017-07-01

    This study evaluates the efficiency of multipoint near-infrared spectroscopy (NIRS) to predict the fat and moisture content of minced beef samples both in at-line and on-line modes. Additionally, it aims at identifying the obstacles that can be encountered in the path of performing in-line monitoring. Near-infrared (NIR) reflectance spectra of minced beef samples were collected using an NIR spectrophotometer, employing a Fabry-Perot interferometer. Partial least squares regression (PLSR) models based on reference values from proximate analysis yielded calibration coefficients of determination (Rc2) of 0.96 for both fat and moisture. For an independent batch of samples, fat was estimated with a prediction coefficient of determination (Rp2) of 0.87 and 0.82 for the samples in at-line and on-line modes, respectively. All the models were found to have good prediction accuracy; however, a higher bias was observed for predictions under on-line mode. Overall results from this study illustrate that multipoint NIR systems combined with multivariate analysis has potential as a process analytical technology (PAT) tool for monitoring process parameters such as fat and moisture in the meat industry, providing real-time spectral and spatial information. © 2017 Institute of Food Technologists®.

  11. A veracity preserving model for synthesizing scalable electricity load profiles

    OpenAIRE

    Huang, Yunyou; Zhan, Jianfeng; Luo, Chunjie; Wang, Lei; Wang, Nana; Zheng, Daoyi; Fan, Fanda; Ren, Rui

    2018-01-01

    Electricity users are the major players of the electric systems, and electricity consumption is growing at an extraordinary rate. The research on electricity consumption behaviors is becoming increasingly important to design and deployment of the electric systems. Unfortunately, electricity load profiles are difficult to acquire. Data synthesis is one of the best approaches to solving the lack of data, and the key is the model that preserves the real electricity consumption behaviors. In this...

  12. Inverse Modeling of Emissions and their Time Profiles

    Czech Academy of Sciences Publication Activity Database

    Resler, Jaroslav; Eben, Kryštof; Juruš, Pavel; Liczki, Jitka

    2010-01-01

    Roč. 1, č. 4 (2010), s. 288-295 ISSN 1309-1042 R&D Projects: GA MŽP SP/1A4/107/07 Grant - others:COST(XE) ES0602 Institutional research plan: CEZ:AV0Z10300504 Keywords : 4DVar * inverse modeling * diurnal time profile of emission * CMAQ adjoint * satellite observations Subject RIV: DG - Athmosphere Sciences, Meteorology

  13. Polyphenolic Profile and Targeted Bioactivity of Methanolic Extracts from Mediterranean Ethnomedicinal Plants on Human Cancer Cell Lines

    Directory of Open Access Journals (Sweden)

    Antonino Pollio

    2016-03-01

    Full Text Available The methanol extracts of the aerial part of four ethnomedicinal plants of Mediterranean region, two non-seed vascular plants, Equisetum hyemale L. and Phyllitis scolopendrium (L. Newman, and two Spermatophyta, Juniperus communis L. (J. communis and Cotinus coggygria Scop. (C. coggygria, were screened against four human cells lines (A549, MCF7, TK6 and U937. Only the extracts of J. communis and C. coggygria showed marked cytotoxic effects, affecting both cell morphology and growth. A dose-dependent effect of these two extracts was also observed on the cell cycle distribution. Incubation of all the cell lines in a medium containing J. communis extract determined a remarkable accumulation of cells in the G2/M phase, whereas the C. coggygria extract induced a significant increase in the percentage of G1 cells. The novelty of our findings stands on the observation that the two extracts, consistently, elicited coherent effects on the cell cycle in four cell lines, independently from their phenotype, as two of them have epithelial origin and grow adherent and two are lymphoblastoid and grow in suspension. Even the expression profiles of several proteins regulating cell cycle progression and cell death were affected by both extracts. LC-MS investigation of methanol extract of C. coggygria led to the identification of twelve flavonoids (compounds 1–11, 19 and eight polyphenols derivatives (12–18, 20, while in J. communis extract, eight flavonoids (21–28, a α-ionone glycoside (29 and a lignin (30 were found. Although many of these compounds have interesting individual biological activities, their natural blends seem to exert specific effects on the proliferation of cell lines either growing adherent or in suspension, suggesting potential use in fighting cancer.

  14. Ionospheric topside models compared with experimental electron density profiles

    Directory of Open Access Journals (Sweden)

    S. M. Radicella

    2005-06-01

    Full Text Available Recently an increasing number of topside electron density profiles has been made available to the scientific community on the Internet. These data are important for ionospheric modeling purposes, since the experimental information on the electron density above the ionosphere maximum of ionization is very scarce. The present work compares NeQuick and IRI models with the topside electron density profiles available in the databases of the ISIS2, IK19 and Cosmos 1809 satellites. Experimental electron content from the F2 peak up to satellite height and electron densities at fixed heights above the peak have been compared under a wide range of different conditions. The analysis performed points out the behavior of the models and the improvements needed to be assessed to have a better reproduction of the experimental results. NeQuick topside is a modified Epstein layer, with thickness parameter determined by an empirical relation. It appears that its performance is strongly affected by this parameter, indicating the need for improvements of its formulation. IRI topside is based on Booker's approach to consider two parts with constant height gradients. It appears that this formulation leads to an overestimation of the electron density in the upper part of the profiles, and overestimation of TEC.

  15. Molecular portrait of cisplatin induced response in human testis cancer cell lines based on gene expression profiles

    Directory of Open Access Journals (Sweden)

    Soderlund Erik J

    2007-08-01

    Full Text Available Abstract Background Testicular germ cell tumors (TGCTs respond well to cisplatin-based chemotherapy and show a low incidence of acquired resistance compared to most somatic tumors. The reasons for these specific characteristics are not known in detail but seem to be multifactorial. We have studied gene expression profiles of testicular and colon cancer derived cell lines treated with cisplatin. The main goal of this study was to identify novel gene expression profiles with their functional categories and the biochemical pathways that are associated with TGCT cells' response to cisplatin. Results Genes that were differentially expressed between the TGCT cell lines vs the (somatic HCT116 cell line, after cisplatin treatment, were identified using the significance analysis of microarrays (SAM method. The response of TGCT cells was strikingly different from that of HCT116, and we identified 1794 genes that were differentially expressed. Functional classification of these genes showed that they participate in a variety of different and widely distributed functional categories and biochemical pathways. Database mining showed significant association of genes (n = 41 induced by cisplatin in our study, and genes previously reported to by expressed in differentiated TGCT cells. We identified 37 p53-responsive genes that were altered after cisplatin exposure. We also identified 40 target genes for two microRNAs, hsa-mir-372 and 373 that may interfere with p53 signaling in TGCTs. The tumor suppressor genes NEO1 and LATS2, and the estrogen receptor gene ESR1, all have binding sites for p53 and hsa-mir-372/373. NEO1 and LATS2 were down-regulated in TGCT cells following cisplatin exposure, while ESR1 was up-regulated in TGCT cells. Cisplatin-induced genes associated with terminal growth arrest through senescence were identified, indicating associations which were not previously described for TGCT cells. Conclusion By linking our gene expression data to

  16. Line-profile tomography of exoplanet transits - II. A gas-giant planet transiting a rapidly rotating A5 star

    Science.gov (United States)

    Collier Cameron, A.; Guenther, E.; Smalley, B.; McDonald, I.; Hebb, L.; Andersen, J.; Augusteijn, Th.; Barros, S. C. C.; Brown, D. J. A.; Cochran, W. D.; Endl, M.; Fossey, S. J.; Hartmann, M.; Maxted, P. F. L.; Pollacco, D.; Skillen, I.; Telting, J.; Waldmann, I. P.; West, R. G.

    2010-09-01

    Most of our knowledge of extrasolar planets rests on precise radial-velocity measurements, either for direct detection or for confirmation of the planetary origin of photometric transit signals. This has limited our exploration of the parameter space of exoplanet hosts to solar- and later-type, sharp-lined stars. Here we extend the realm of stars with known planetary companions to include hot, fast-rotating stars. Planet-like transits have previously been reported in the light curve obtained by the SuperWASP survey of the A5 star HD15082 (WASP-33 V = 8.3, v sini = 86 km s-1). Here we report further photometry and time-series spectroscopy through three separate transits, which we use to confirm the existence of a gas-giant planet with an orbital period of 1.22d in orbit around HD15082. From the photometry and the properties of the planet signal travelling through the spectral line profiles during the transit, we directly derive the size of the planet, the inclination and obliquity of its orbital plane and its retrograde orbital motion relative to the spin of the star. This kind of analysis opens the way to studying the formation of planets around a whole new class of young, early-type stars, hence under different physical conditions and generally in an earlier stage of formation than in sharp-lined late-type stars. The reflex orbital motion of the star caused by the transiting planet is small, yielding an upper mass limit of 4.1MJupiter on the planet. We also find evidence of a third body of substellar mass in the system, which may explain the unusual orbit of the transiting planet. In HD 15082, the stellar line profiles also show evidence of non-radial pulsations, clearly distinct from the planetary transit signal. This raises the intriguing possibility that tides raised by the close-in planet may excite or amplify the pulsations in such stars. Based on observations at Tautenburg Observatory, McDonald Observatory and the Nordic Optical Telescope. E-mail: acc4@st-and.ac.uk

  17. Analysis of miRNA expression profiles in melatonin-exposed GC-1 spg cell line.

    Science.gov (United States)

    Zhu, Xiaoling; Chen, Shuxiong; Jiang, Yanwen; Xu, Ying; Zhao, Yun; Chen, Lu; Li, Chunjin; Zhou, Xu

    2018-02-05

    Melatonin is an endocrine neurohormone secreted by pinealocytes in the pineal gland. It exerts diverse physiological effects, such as circadian rhythm regulator and antioxidant. However, the functional importance of melatonin in spermatogenesis regulation remains unclear. The objectives of this study are to: (1) detect melatonin affection on miRNA expression profiles in GC-1 spg cells by miRNA deep sequencing (DeepSeq) and (2) define melatonin affected miRNA-mRNA interactions and associated biological processes using bioinformatics analysis. GC-1 spg cells were cultured with melatonin (10 -7 M) for 24h. DeepSeq data were validated using quantitative real-time reverse transcription polymerase chain reaction analysis (qRT-PCR). A total of 176 miRNA expressions were found to be significantly different between two groups (fold change of >2 or melatonin could regulate the expression of miRNA to perform its physiological effects in GC-1 spg cells. These results should be useful to investigate the biological function of miRNAs regulated by melatonin in spermatogenesis and testicular germ cell tumor. Copyright © 2017 Elsevier B.V. All rights reserved.

  18. A multi-model analysis of vertical ozone profiles

    Science.gov (United States)

    Jonson, J. E.; Stohl, A.; Fiore, A. M.; Hess, P.; Szopa, S.; Wild, O.; Zeng, G.; Dentener, F. J.; Lupu, A.; Schultz, M. G.; Duncan, B. N.; Sudo, K.; Wind, P.; Schulz, M.; Marmer, E.; Cuvelier, C.; Keating, T.; Zuber, A.; Valdebenito, A.; Dorokhov, V.; de Backer, H.; Davies, J.; Chen, G. H.; Johnson, B.; Tarasick, D. W.; Stübi, R.; Newchurch, M. J.; von der Gathen, P.; Steinbrecht, W.; Claude, H.

    2010-06-01

    A multi-model study of the long-range transport of ozone and its precursors from major anthropogenic source regions was coordinated by the Task Force on Hemispheric Transport of Air Pollution (TF HTAP) under the Convention on Long-range Transboundary Air Pollution (LRTAP). Vertical profiles of ozone at 12-h intervals from 2001 are available from twelve of the models contributing to this study and are compared here with observed profiles from ozonesondes. The contributions from each major source region are analysed for selected sondes, and this analysis is supplemented by retroplume calculations using the FLEXPART Lagrangian particle dispersion model to provide insight into the origin of ozone transport events and the cause of differences between the models and observations. In the boundary layer ozone levels are in general strongly affected by regional sources and sinks. With a considerably longer lifetime in the free troposphere, ozone here is to a much larger extent affected by processes on a larger scale such as intercontinental transport and exchange with the stratosphere. Such individual events are difficult to trace over several days or weeks of transport. This may explain why statistical relationships between models and ozonesonde measurements are far less satisfactory than shown in previous studies for surface measurements at all seasons. The lowest bias between model-calculated ozone profiles and the ozonesonde measurements is seen in the winter and autumn months. Following the increase in photochemical activity in the spring and summer months, the spread in model results increases, and the agreement between ozonesonde measurements and the individual models deteriorates further. At selected sites calculated contributions to ozone levels in the free troposphere from intercontinental transport are shown. Intercontinental transport is identified based on differences in model calculations with unperturbed emissions and emissions reduced by 20% by region

  19. A multi-model analysis of vertical ozone profiles

    Directory of Open Access Journals (Sweden)

    J. E. Jonson

    2010-06-01

    Full Text Available A multi-model study of the long-range transport of ozone and its precursors from major anthropogenic source regions was coordinated by the Task Force on Hemispheric Transport of Air Pollution (TF HTAP under the Convention on Long-range Transboundary Air Pollution (LRTAP. Vertical profiles of ozone at 12-h intervals from 2001 are available from twelve of the models contributing to this study and are compared here with observed profiles from ozonesondes. The contributions from each major source region are analysed for selected sondes, and this analysis is supplemented by retroplume calculations using the FLEXPART Lagrangian particle dispersion model to provide insight into the origin of ozone transport events and the cause of differences between the models and observations.

    In the boundary layer ozone levels are in general strongly affected by regional sources and sinks. With a considerably longer lifetime in the free troposphere, ozone here is to a much larger extent affected by processes on a larger scale such as intercontinental transport and exchange with the stratosphere. Such individual events are difficult to trace over several days or weeks of transport. This may explain why statistical relationships between models and ozonesonde measurements are far less satisfactory than shown in previous studies for surface measurements at all seasons. The lowest bias between model-calculated ozone profiles and the ozonesonde measurements is seen in the winter and autumn months. Following the increase in photochemical activity in the spring and summer months, the spread in model results increases, and the agreement between ozonesonde measurements and the individual models deteriorates further.

    At selected sites calculated contributions to ozone levels in the free troposphere from intercontinental transport are shown. Intercontinental transport is identified based on differences in model calculations with unperturbed emissions and

  20. Determination of dislocation density by electron backscatter diffraction and X-ray line profile analysis in ferrous lath martensite

    International Nuclear Information System (INIS)

    Berecz, Tibor; Jenei, Péter; Csóré, András; Lábár, János; Gubicza, Jenő

    2016-01-01

    The microstructure and the dislocation density in as-quenched ferrous lath martensite were studied by different methods. The blocks, packets and variants formed due to martensitic transformation were identified and their sizes were determined by electron backscatter diffraction (EBSD). Concomitant transmission electron microscopy (TEM) investigation revealed that the laths contain subgrains with the size between 50 and 100 nm. A novel evaluation procedure of EBSD images was elaborated for the determination of the density and the space distribution of geometrically necessary dislocations from the misorientation distribution. The total dislocation density obtained by X-ray diffraction line profile analysis was in good agreement with the value determined by EBSD, indicating that the majority of dislocations formed due to martensitic transformation during quenching are geometrically necessary dislocations.

  1. Multiplex flow cytometry barcoding and antibody arrays identify surface antigen profiles of primary and metastatic colon cancer cell lines.

    Directory of Open Access Journals (Sweden)

    Kumar Sukhdeo

    Full Text Available Colon cancer is a deadly disease affecting millions of people worldwide. Current treatment challenges include management of disease burden as well as improvements in detection and targeting of tumor cells. To identify disease state-specific surface antigen signatures, we combined fluorescent cell barcoding with high-throughput flow cytometric profiling of primary and metastatic colon cancer lines (SW480, SW620, and HCT116. Our multiplexed technique offers improvements over conventional methods by permitting the simultaneous and rapid screening of cancer cells with reduced effort and cost. The method uses a protein-level analysis with commercially available antibodies on live cells with intact epitopes to detect potential tumor-specific targets that can be further investigated for their clinical utility. Multiplexed antibody arrays can easily be applied to other tumor types or pathologies for discovery-based approaches to target identification.

  2. Profiles

    International Nuclear Information System (INIS)

    2004-01-01

    Profiles is a synthetic overview of more than 100 national energy markets in the world, providing insightful facts and key energy statistics. A Profile is structured around 6 main items and completed by key statistics: Ministries, public agencies, energy policy are concerned; main companies in the oil, gas, electricity and coal sectors, status, shareholders; reserve, production, imports and exports, electricity and refining capacities; deregulation of prices, subsidies, taxes; consumption trends by sector, energy market shares; main energy projects, production and consumption prospects. Statistical Profiles are present in about 3 pages the main data and indicators on oil, gas, coal and electricity. (A.L.B.)

  3. Proteomic profiling of a robust Wolbachia infection in an Aedes albopictus mosquito cell line.

    Science.gov (United States)

    Baldridge, Gerald D; Baldridge, Abigail S; Witthuhn, Bruce A; Higgins, LeeAnn; Markowski, Todd W; Fallon, Ann M

    2014-11-01

    Wolbachia pipientis, a widespread vertically transmitted intracellular bacterium, provides a tool for insect control through manipulation of host-microbe interactions. We report proteomic characterization of wStr, a Wolbachia strain associated with a strong cytoplasmic incompatibility phenotype in its native host, Laodelphax striatellus. In the Aedes albopictus C/wStr1 mosquito cell line, wStr maintains a robust, persistent infection. MS/MS analyses of gel bands revealed a protein 'footprint' dominated by Wolbachia-encoded chaperones, stress response and cell membrane proteins, including the surface antigen WspA, a peptidoglycan-associated lipoprotein and a 73 kDa outer membrane protein. Functional classifications and estimated abundance levels of 790 identified proteins suggested that expression, stabilization and secretion of proteins predominate over bacterial genome replication and cell division. High relative abundances of cysteine desulphurase, serine/glycine hydroxymethyl transferase, and components of the α-ketoglutarate dehydrogenase complex in conjunction with above average abundances of glutamate dehydrogenase and proline utilization protein A support Wolbachia genome-based predictions for amino acid metabolism as a primary energy source. wStr expresses 15 Vir proteins of a Type IV secretion system and its transcriptional regulator. Proteomic characterization of a robust insect-associated Wolbachia strain provides baseline information that will inform further development of in vitro protocols for Wolbachia manipulation. © 2014 John Wiley & Sons Ltd.

  4. RAPTOR: Optimization, real-time simulation and control of the tokamak q profile evolution using a simplified transport model

    Science.gov (United States)

    Felici, Federico; Sauter, Olivier; Goodman, Timothy; Paley, James

    2010-11-01

    Control of the plasma current density and safety factor profile evolution in a tokamak is crucial for accessing advanced regimes. The evolution of the current density profile is steered by a combination of inductive voltage and auxiliary current drive actuators, and is nonlinearly coupled to the evolution of the (ion/electron) temperature and density profiles. Using appropriate simplifications, a model has been obtained which can be simulated on time scales faster than the tokamak discharge itself, but still retains the essential physics describing the nonlinear coupling between the profiles. This model, dubbed RAPTOR (Rapid Plasma Transport simulatOR) has been implemented in the new real-time control system on the TCV tokamak at CRPP, and can be used for real-time reconstruction and model-based control of the q profile. It can also be used off-line to determine optimal actuator trajectories in open loop simulations to steer the plasma profiles towards their required steady-state shapes while remaining within a constrained set of allowable profiles.

  5. [Influence of hepatocyte cell adhesion molecule on gene expression profile of human bladder transitional cell carcinoma cell line].

    Science.gov (United States)

    Wang, Qiu-ju; Lv, Chang-kun; Tao, Jia; Du, Hong-fei; Fan, Yan-ru; Song, Xue-dong; Luo, Chun-li

    2013-04-01

    To investigate the changes of gene expression file in transitional cell carcinoma of bladder after hepatocyte cell adhesion molecule(hepaCAM) overexpression. Affymetrix Human Genome U133 Plus 2.0 Array was used to investigate the changes of gene expression profile between adenovirus-green fluorescent protein(GFP) -hepaCAM group and GFP group in transitional cell carcinoma of bladder EJ cells.Significant Analysis of Microarray(SAM) was used to screen the differentially expressed genes, DAVID software was used to conduct gene ontology analysis and wikiPathway analysis based on the differentially expressed genes. Reverse transcription-polymerase chain reaction and Western blot were applied to verify microarray data. Compared with the GFP group, a total of 2469 genes were up-regulated or down-regulated by more than 2 times in the GFP-hepaCAM group. Among these genes, 1602 genes were up-regulated and 867 were down-regulated.Most of the differentially expressed genes were involved in the function of cell proliferation and cell cycle regulation. The mRNA expressions of nibrin, liver kinase B1, and cyclin D1 detected by reverse transcription-polymerase chain reaction in three different bladder cancer cell lines were consistent with the microarray data.The protein expressions of nibrin and liver kinase B1 in these three cell lines measured by Western blot were consistent with the mRNA expression. HepaCAM can alter the gene expression profile of bladder cancer EJ cells. The well-known anti-tumor effect of hepaCAM may be mediated by regulating the gene expression via multiple pathways.

  6. Profiles of spectral lines, magnetic fields and thermodynamical conditions in the X17.2/4B solar flare of October 28, 2003

    Science.gov (United States)

    Lozitsky, V. G.; Baranovsky, E. A.; Lozitska, N. I.; Tarashchuk, V. P.

    2018-03-01

    We analyse the peak phase of the exclusively powerful solar proton flare of October 28, 2003 which had originated in the active region NOAA 0486. For studying the physical conditions in the flare, we used twelve spectral lines including lines from FeI, FeII, and the Hα, Hβ, Hγ, Hδ lines observed with the Echelle spectrograph of the horizontal solar telescope of the Astronomical Observatory of the Taras Shevchenko National University of Kyiv. We found that this flare had a unique Balmer decrement, with the record ratio I (Hβ) / I(Hα) = 1.68 of Hβ and Hα intensities, which is unprecedented for all flares observed. In a place outside sunspots, the effective magnetic field measured by splitting `center of gravity' I ± V profiles was found within the range of 0-200 G in the middle photosphere, till 1200 G in the upper photosphere and the temperature minimum zone and up to 500 G in the chromosphere. The essential broadening of the FeI 5250.2 line versus the FeI 5247.1 one was found indicating the presence of a strong (800-1100 G) `turbulent' field in the middle photosphere. A semi-empirical model of the chromosphere constructed using the algorithms in PANDORA code has an interesting peculiarity, namely, three discrete layers with an increased concentration and / or temperature, including a very dense and thin layer with the following parameters: the concentration of hydrogen nH = 1018 cm3, the thickness Δh = 3-5 km, and a height of h ≈ 1200 km above the photosphere.

  7. Element-specific density profiles in interacting biomembrane models

    International Nuclear Information System (INIS)

    Schneck, Emanuel; Rodriguez-Loureiro, Ignacio; Bertinetti, Luca; Gochev, Georgi; Marin, Egor; Novikov, Dmitri; Konovalov, Oleg

    2017-01-01

    Surface interactions involving biomembranes, such as cell–cell interactions or membrane contacts inside cells play important roles in numerous biological processes. Structural insight into the interacting surfaces is a prerequisite to understand the interaction characteristics as well as the underlying physical mechanisms. Here, we work with simplified planar experimental models of membrane surfaces, composed of lipids and lipopolymers. Their interaction is quantified in terms of pressure–distance curves using ellipsometry at controlled dehydrating (interaction) pressures. For selected pressures, their internal structure is investigated by standing-wave x-ray fluorescence (SWXF). This technique yields specific density profiles of the chemical elements P and S belonging to lipid headgroups and polymer chains, as well as counter-ion profiles for charged surfaces. (paper)

  8. Reduced Lorenz models for anomalous transport and profile resilience

    DEFF Research Database (Denmark)

    Rypdal, K.; Garcia, Odd Erik

    2007-01-01

    The physical basis for the Lorenz equations for convective cells in stratified fluids, and for magnetized plasmas imbedded in curved magnetic fields, are reexamined with emphasis on anomalous transport. It is shown that the Galerkin truncation leading to the Lorenz equations for the closed boundary...... problem is incompatible with finite fluxes through the system in the limit of vanishing diffusion. An alternative formulation leading to the Lorenz equations is proposed, invoking open boundaries and the notion of convective streamers and their back-reaction on the profile gradient, giving rise...... to resilience of the profile. Particular emphasis is put on the diffusionless limit, where these equations reduce to a simple dynamical system depending only on one single forcing parameter. This model is studied numerically, stressing experimentally observable signatures, and some of the perils of dimension...

  9. Visual Modelling of Data Warehousing Flows with UML Profiles

    Science.gov (United States)

    Pardillo, Jesús; Golfarelli, Matteo; Rizzi, Stefano; Trujillo, Juan

    Data warehousing involves complex processes that transform source data through several stages to deliver suitable information ready to be analysed. Though many techniques for visual modelling of data warehouses from the static point of view have been devised, only few attempts have been made to model the data flows involved in a data warehousing process. Besides, each attempt was mainly aimed at a specific application, such as ETL, OLAP, what-if analysis, data mining. Data flows are typically very complex in this domain; for this reason, we argue, designers would greatly benefit from a technique for uniformly modelling data warehousing flows for all applications. In this paper, we propose an integrated visual modelling technique for data cubes and data flows. This technique is based on UML profiling; its feasibility is evaluated by means of a prototype implementation.

  10. Magnitude Differences in Bioactive Compounds, Chemical Functional Groups, Fatty Acid Profiles, Nutrient Degradation and Digestion, Molecular Structure, and Metabolic Characteristics of Protein in Newly Developed Yellow-Seeded and Black-Seeded Canola Lines.

    Science.gov (United States)

    Theodoridou, Katerina; Zhang, Xuewei; Vail, Sally; Yu, Peiqiang

    2015-06-10

    Recently, new lines of yellow-seeded (CS-Y) and black-seeded canola (CS-B) have been developed with chemical and structural alteration through modern breeding technology. However, no systematic study was found on the bioactive compounds, chemical functional groups, fatty acid profiles, inherent structure, nutrient degradation and absorption, or metabolic characteristics between the newly developed yellow- and black-seeded canola lines. This study aimed to systematically characterize chemical, structural, and nutritional features in these canola lines. The parameters accessed include bioactive compounds and antinutrition factors, chemical functional groups, detailed chemical and nutrient profiles, energy value, nutrient fractions, protein structure, degradation kinetics, intestinal digestion, true intestinal protein supply, and feed milk value. The results showed that the CS-Y line was lower (P ≤ 0.05) in neutral detergent fiber (122 vs 154 g/kg DM), acid detergent fiber (61 vs 99 g/kg DM), lignin (58 vs 77 g/kg DM), nonprotein nitrogen (56 vs 68 g/kg DM), and acid detergent insoluble protein (11 vs 35 g/kg DM) than the CS-B line. There was no difference in fatty acid profiles except C20:1 eicosenoic acid content (omega-9) which was in lower in the CS-Y line (P makeup and conformation between the two lines. In terms of energy values, there were significant differences in total digestible nutrient (TDN; 149 vs 133 g/kg DM), metabolizable energy (ME; 58 vs 52 MJ/kg DM), and net energy for lactation (NEL; 42 vs 37 MJ/kg DM) between CS-Y and CS-B lines. For in situ rumen degradation kinetics, the two lines differed in soluble fraction (S; 284 vs 341 g/kg CP), potential degradation fraction (D; 672 vs 590 g/kg CP), and effective degraded organic matter (EDOM; 710 vs 684 g/kg OM), but no difference in degradation rate. CS-Y had higher digestibility of rumen bypass protein in the intestine than CS-B (566 vs 446 g/kg of RUP, P < 0.05). Modeling nutrient supply results

  11. Cytokine profiling of MCF-7 cell line 2D, progressive 3D, and 3D revert cultures.

    Science.gov (United States)

    Subramaniyan, Aishwarya; Maddaly, Ravi

    2018-02-01

    Cancer cytokines are known to mediate several complex cancer cell physiologies. Also, cancer cells themselves are known to secrete cytokines whose expressions and net inducible results are controlled by a variety of factors. We profiled a few cytokines secreted by 2D, 3D aggregates, and the 3DRs of MCF-7 cell line at various time points. Several cytokines were seen more expressed by 3D cultures on the 4th day and IL-10 peaked on the day 1 of 3D cultures while TNF-α level peaked on the 7th day. α-Defensin, SDF-7, and TGF-β also showed markedly higher levels. There was a reduced expression of IL-6 and IL-17 by the 3DRs. TGF-β did not show much change among the 2D, progressive 3D, and 3DR cultures. Utilizing 3DRs as study material will be a significant extension of the ways cells lines can be used for research. © 2017 Wiley Periodicals, Inc.

  12. Metabolic Profile of Oral Squamous Carcinoma Cell Lines Relies on a Higher Demand of Lipid Metabolism in Metastatic Cells

    Directory of Open Access Journals (Sweden)

    Ana Carolina B. Sant’Anna-Silva

    2018-02-01

    Full Text Available Tumor cells are subjected to a broad range of selective pressures. As a result of the imposed stress, subpopulations of surviving cells exhibit individual biochemical phenotypes that reflect metabolic reprograming. The present work aimed at investigating metabolic parameters of cells displaying increasing degrees of metastatic potential. The metabolites present in cell extracts fraction of tongue fibroblasts and of cell lines derived from human tongue squamous cell carcinoma lineages displaying increasing metastatic potential (SCC9 ZsG, LN1 and LN2 were analyzed by 1H NMR (nuclear magnetic resonance spectroscopy. Living, intact cells were also examined by the non-invasive method of fluorescence lifetime imaging microscopy (FLIM based on the auto fluorescence of endogenous NADH. The cell lines reproducibly exhibited distinct metabolic profiles confirmed by Partial Least-Square Discriminant Analysis (PLS-DA of the spectra. Measurement of endogenous free and bound NAD(PH relative concentrations in the intact cell lines showed that ZsG and LN1 cells displayed high heterogeneity in the energy metabolism, indicating that the cells would oscillate between glycolysis and oxidative metabolism depending on the microenvironment’s composition. However, LN2 cells appeared to have more contributions to the oxidative status, displaying a lower NAD(PH free/bound ratio. Functional experiments of energy metabolism, mitochondrial physiology, and proliferation assays revealed that all lineages exhibited similar energy features, although resorting to different bioenergetics strategies to face metabolic demands. These differentiated functions may also promote metastasis. We propose that lipid metabolism is related to the increased invasiveness as a result of the accumulation of malonate, methyl malonic acid, n-acetyl and unsaturated fatty acids (CH2n in parallel with the metastatic potential progression, thus suggesting that the NAD(PH reflected the lipid catabolic

  13. Modeling Adenovirus Latency in Human Lymphocyte Cell Lines ▿ †

    OpenAIRE

    Zhang, Yange; Huang, Wen; Ornelles, David A.; Gooding, Linda R.

    2010-01-01

    Species C adenovirus establishes a latent infection in lymphocytes of the tonsils and adenoids. To understand how this lytic virus is maintained in these cells, four human lymphocytic cell lines that support the entire virus life cycle were examined. The T-cell line Jurkat ceased proliferation and died shortly after virus infection. BJAB, Ramos (B cells), and KE37 (T cells) continued to divide at nearly normal rates while replicating the virus genome. Viral genome numbers peaked and then decl...

  14. A transmission line model for propagation in elliptical core optical fibers

    Energy Technology Data Exchange (ETDEWEB)

    Georgantzos, E.; Boucouvalas, A. C. [Department of Telecommunications and Informatics, University of Peloponnese, Karaiskaki 70, 221 00, Tripoli Greece (Greece); Papageorgiou, C. [Department of Electrical Engineering, National technical University of Athens, Iroon Politechniou 9, Kaisariani, 16121, Athens (Greece)

    2015-12-31

    The calculation of mode propagation constants of elliptical core fibers has been the purpose of extended research leading to many notable methods, with the classic step index solution based on Mathieu functions. This paper seeks to derive a new innovative method for the determination of mode propagation constants in single mode fibers with elliptic core by modeling the elliptical fiber as a series of connected coupled transmission line elements. We develop a matrix formulation of the transmission line and the resonance of the circuits is used to calculate the mode propagation constants. The technique, used with success in the case of cylindrical fibers, is now being extended for the case of fibers with elliptical cross section. The advantage of this approach is that it is very well suited to be able to calculate the mode dispersion of arbitrary refractive index profile elliptical waveguides. The analysis begins with the deployment Maxwell’s equations adjusted for elliptical coordinates. Further algebraic analysis leads to a set of equations where we are faced with the appearance of harmonics. Taking into consideration predefined fixed number of harmonics simplifies the problem and enables the use of the resonant circuits approach. According to each case, programs have been created in Matlab, providing with a series of results (mode propagation constants) that are further compared with corresponding results from the ready known Mathieu functions method.

  15. A transmission line model for propagation in elliptical core optical fibers

    Science.gov (United States)

    Georgantzos, E.; Papageorgiou, C.; Boucouvalas, A. C.

    2015-12-01

    The calculation of mode propagation constants of elliptical core fibers has been the purpose of extended research leading to many notable methods, with the classic step index solution based on Mathieu functions. This paper seeks to derive a new innovative method for the determination of mode propagation constants in single mode fibers with elliptic core by modeling the elliptical fiber as a series of connected coupled transmission line elements. We develop a matrix formulation of the transmission line and the resonance of the circuits is used to calculate the mode propagation constants. The technique, used with success in the case of cylindrical fibers, is now being extended for the case of fibers with elliptical cross section. The advantage of this approach is that it is very well suited to be able to calculate the mode dispersion of arbitrary refractive index profile elliptical waveguides. The analysis begins with the deployment Maxwell's equations adjusted for elliptical coordinates. Further algebraic analysis leads to a set of equations where we are faced with the appearance of harmonics. Taking into consideration predefined fixed number of harmonics simplifies the problem and enables the use of the resonant circuits approach. According to each case, programs have been created in Matlab, providing with a series of results (mode propagation constants) that are further compared with corresponding results from the ready known Mathieu functions method.

  16. A transmission line model for propagation in elliptical core optical fibers

    International Nuclear Information System (INIS)

    Georgantzos, E.; Boucouvalas, A. C.; Papageorgiou, C.

    2015-01-01

    The calculation of mode propagation constants of elliptical core fibers has been the purpose of extended research leading to many notable methods, with the classic step index solution based on Mathieu functions. This paper seeks to derive a new innovative method for the determination of mode propagation constants in single mode fibers with elliptic core by modeling the elliptical fiber as a series of connected coupled transmission line elements. We develop a matrix formulation of the transmission line and the resonance of the circuits is used to calculate the mode propagation constants. The technique, used with success in the case of cylindrical fibers, is now being extended for the case of fibers with elliptical cross section. The advantage of this approach is that it is very well suited to be able to calculate the mode dispersion of arbitrary refractive index profile elliptical waveguides. The analysis begins with the deployment Maxwell’s equations adjusted for elliptical coordinates. Further algebraic analysis leads to a set of equations where we are faced with the appearance of harmonics. Taking into consideration predefined fixed number of harmonics simplifies the problem and enables the use of the resonant circuits approach. According to each case, programs have been created in Matlab, providing with a series of results (mode propagation constants) that are further compared with corresponding results from the ready known Mathieu functions method

  17. O Star Wind Mass-Loss Rates and Shock Physics from X-ray Line Profiles in Archival XMM RGS Data

    Science.gov (United States)

    Cohen, David

    O stars are characterized by their dense, supersonic stellar winds. These winds are the site of X-ray emission from shock-heated plasma. By analyzing high-resolution X-ray spectra of these O stars, we can learn about the wind-shock heating and X-ray production mechanism. But in addition, the X-rays can also be used to measure the mass-loss rate of the stellar wind, which is a key observational quantity whose value affects stellar evolution and energy, momentum, and mass input to the Galactic interstellar medium. We make this X-ray based mass-loss measurement by analyzing the profile shapes of the X-ray emission lines observed at high resolution with the Chandra and XMM-Newton grating spectrometers. One advantage of our method is that it is insensitive to small-scale clumping that affects density-squared diagnostics. We are applying this analysis technique to O stars in the Chandra archive, and are finding mass-loss rates lower than those traditionally assumed for these O stars, and in line with more recent independent determinations that do account for clumping. By extending this analysis to the XMM RGS data archive, we will make significant contributions to the understanding of both X-ray production in O stars and to addressing the issue of the actual mass-loss rates of O stars. The XMM RGS data archive provides several extensions and advantages over the smaller Chandra HETGS archive: (1) there are roughly twice as many O and early B stars in the XMM archive; (2) the longer wavelength response of the RGS provides access to diagnostically important lines of nitrogen and carbon; (3) the very long, multiple exposures of zeta Pup provide the opportunity to study this canonical O supergiant's X-ray spectrum in unprecedented detail, including looking at the time variability of X-ray line profiles. Our research team has developed a sophisticated empirical line profile model as well as a computational infrastructure for fitting the model to high-resolution X-ray spectra

  18. Five-Factor Model personality profiles of drug users

    Directory of Open Access Journals (Sweden)

    Crum Rosa M

    2008-04-01

    Full Text Available Abstract Background Personality traits are considered risk factors for drug use, and, in turn, the psychoactive substances impact individuals' traits. Furthermore, there is increasing interest in developing treatment approaches that match an individual's personality profile. To advance our knowledge of the role of individual differences in drug use, the present study compares the personality profile of tobacco, marijuana, cocaine, and heroin users and non-users using the wide spectrum Five-Factor Model (FFM of personality in a diverse community sample. Method Participants (N = 1,102; mean age = 57 were part of the Epidemiologic Catchment Area (ECA program in Baltimore, MD, USA. The sample was drawn from a community with a wide range of socio-economic conditions. Personality traits were assessed with the Revised NEO Personality Inventory (NEO-PI-R, and psychoactive substance use was assessed with systematic interview. Results Compared to never smokers, current cigarette smokers score lower on Conscientiousness and higher on Neuroticism. Similar, but more extreme, is the profile of cocaine/heroin users, which score very high on Neuroticism, especially Vulnerability, and very low on Conscientiousness, particularly Competence, Achievement-Striving, and Deliberation. By contrast, marijuana users score high on Openness to Experience, average on Neuroticism, but low on Agreeableness and Conscientiousness. Conclusion In addition to confirming high levels of negative affect and impulsive traits, this study highlights the links between drug use and low Conscientiousness. These links provide insight into the etiology of drug use and have implications for public health interventions.

  19. Five-Factor Model personality profiles of drug users.

    Science.gov (United States)

    Terracciano, Antonio; Löckenhoff, Corinna E; Crum, Rosa M; Bienvenu, O Joseph; Costa, Paul T

    2008-04-11

    Personality traits are considered risk factors for drug use, and, in turn, the psychoactive substances impact individuals' traits. Furthermore, there is increasing interest in developing treatment approaches that match an individual's personality profile. To advance our knowledge of the role of individual differences in drug use, the present study compares the personality profile of tobacco, marijuana, cocaine, and heroin users and non-users using the wide spectrum Five-Factor Model (FFM) of personality in a diverse community sample. Participants (N = 1,102; mean age = 57) were part of the Epidemiologic Catchment Area (ECA) program in Baltimore, MD, USA. The sample was drawn from a community with a wide range of socio-economic conditions. Personality traits were assessed with the Revised NEO Personality Inventory (NEO-PI-R), and psychoactive substance use was assessed with systematic interview. Compared to never smokers, current cigarette smokers score lower on Conscientiousness and higher on Neuroticism. Similar, but more extreme, is the profile of cocaine/heroin users, which score very high on Neuroticism, especially Vulnerability, and very low on Conscientiousness, particularly Competence, Achievement-Striving, and Deliberation. By contrast, marijuana users score high on Openness to Experience, average on Neuroticism, but low on Agreeableness and Conscientiousness. In addition to confirming high levels of negative affect and impulsive traits, this study highlights the links between drug use and low Conscientiousness. These links provide insight into the etiology of drug use and have implications for public health interventions.

  20. Pressure and velocity profiles in a static mechanical hemilarynx model

    Science.gov (United States)

    Alipour, Fariborz; Scherer, Ronald C.

    2002-12-01

    This study examined pressure and velocity profiles in a hemilarynx mechanical model of phonation. The glottal section had parallel walls and was fabricated from hard plastic. Twelve pressure taps were created in the vocal fold surface and connected to a differential pressure transducer through a pressure switch. The glottal gap was measured with feeler gauges and the uniform glottal duct was verified by use of a laser system. Eight pressure transducers were placed in the flat wall opposite the vocal fold. Hot-wire anemometry was used to obtain velocity profiles upstream and downstream of the glottis. The results indicate that the pressure distribution on the vocal fold surface was consistent with pressure change along a parallel duct, whereas the pressures on the opposite flat wall typically were lower (by 8%-40% of the transglottal pressure just past mid-glottis). The upstream velocity profiles were symmetric regardless of the constriction shape and size. The jet flow downstream of the glottis was turbulent even for laminar upstream conditions. The front of the jet was consistently approximately 1.5 mm from the flat wall for glottal gaps of 0.4, 0.8 and 1.2 mm. The turbulence intensity also remained approximately at the same location of about 4 mm from the flat wall for the two larger gaps.

  1. A model for quantification of temperature profiles via germination times

    DEFF Research Database (Denmark)

    Pipper, Christian Bressen; Adolf, Verena Isabelle; Jacobsen, Sven-Erik

    2013-01-01

    Current methodology to quantify temperature characteristics in germination of seeds is predominantly based on analysis of the time to reach a given germination fraction, that is, the quantiles in the distribution of the germination time of a seed. In practice interpolation between observed...... germination fractions at given monitoring times is used to obtain the time to reach a given germination fraction. As a consequence the obtained value will be highly dependent on the actual monitoring scheme used in the experiment. In this paper a link between currently used quantile models for the germination...... time and a specific type of accelerated failure time models is provided. As a consequence the observed number of germinated seeds at given monitoring times may be analysed directly by a grouped time-to-event model from which characteristics of the temperature profile may be identified and estimated...

  2. An analytical framework for handling production time variety at workstations of mixed-model assembly lines

    OpenAIRE

    Keckl, Stefan; Kern, Wolfgang; Abou-Haydar, A.; Westkämper, Engelbert

    2016-01-01

    In recent years market demands have shifted towards customized products. As a result many manufacturing companies face an increasing variety of their product range. As it is not profitable to install new assembly lines for each product, assembly lines have to be able to handle different products in batch size one. In literature these lines are called mixed-model lines. They follow the logical principal of flow production but are capable of producing different products while needing minimal mo...

  3. Theoretical quasar emission-line ratios. VII - Energy-balance models for finite hydrogen slabs

    Science.gov (United States)

    Hubbard, E. N.; Puetter, R. C.

    1985-01-01

    The present energy balance calculations for finite, isobaric, hydrogen-slab quasar emission line clouds incorporate probabilistic radiative transfer (RT) in all lines and bound-free continua of a five-level continuum model hydrogen atom. Attention is given to the line ratios, line formation regions, level populations and model applicability results obtained. H lines and a variety of other considerations suggest the possibility of emission line cloud densities in excess of 10 to the 10th/cu cm. Lyman-beta/Lyman-alpha line ratios that are in agreement with observed values are obtained by the models. The observed Lyman/Balmer ratios can be achieved with clouds whose column depths are about 10 to the 22nd/sq cm.

  4. Scanning electron microscope measurement of width and shape of 10nm patterned lines using a JMONSEL-modeled library.

    Science.gov (United States)

    Villarrubia, J S; Vladár, A E; Ming, B; Kline, R J; Sunday, D F; Chawla, J S; List, S

    2015-07-01

    The width and shape of 10nm to 12 nm wide lithographically patterned SiO2 lines were measured in the scanning electron microscope by fitting the measured intensity vs. position to a physics-based model in which the lines' widths and shapes are parameters. The approximately 32 nm pitch sample was patterned at Intel using a state-of-the-art pitch quartering process. Their narrow widths and asymmetrical shapes are representative of near-future generation transistor gates. These pose a challenge: the narrowness because electrons landing near one edge may scatter out of the other, so that the intensity profile at each edge becomes width-dependent, and the asymmetry because the shape requires more parameters to describe and measure. Modeling was performed by JMONSEL (Java Monte Carlo Simulation of Secondary Electrons), which produces a predicted yield vs. position for a given sample shape and composition. The simulator produces a library of predicted profiles for varying sample geometry. Shape parameter values are adjusted until interpolation of the library with those values best matches the measured image. Profiles thereby determined agreed with those determined by transmission electron microscopy and critical dimension small-angle x-ray scattering to better than 1 nm. Published by Elsevier B.V.

  5. Secondary beam line phase space measurement and modeling at LAMPF

    International Nuclear Information System (INIS)

    Floyd, R.; Harrison, J.; Macek, R.; Sanders, G.

    1979-01-01

    Hardware and software have been developed for precision on-line measurement and fitting of secondary beam line phase space parameters. A system consisting of three MWPC planes for measuring particle trajectories, in coincidence with a time-of-flight telescope and a range telescope for particle identification, has been interfaced to a computer. Software has been developed for on-line track reconstruction, application of experimental cuts, and fitting of two-dimensional phase space ellipses for each particle species. The measured distributions have been found to agree well with the predictions of the Monte Carlo program DECAY TURTLE. The fitted phase space ellipses are a useful input to optimization routines, such as TRANSPORT, used to search for superior tunes. Application of this system to the LAMPF Stopped Muon Channel is described

  6. Line impedance estimation using model based identification technique

    DEFF Research Database (Denmark)

    Ciobotaru, Mihai; Agelidis, Vassilios; Teodorescu, Remus

    2011-01-01

    The estimation of the line impedance can be used by the control of numerous grid-connected systems, such as active filters, islanding detection techniques, non-linear current controllers, detection of the on/off grid operation mode. Therefore, estimating the line impedance can add extra functions......-passive behaviour of the proposed method comes from the combination of the non intrusive behaviour of the passive methods with a better accuracy of the active methods. The simulation results reveal the good accuracy of the proposed method....

  7. Inverse modeling of FIB milling by dose profile optimization

    International Nuclear Information System (INIS)

    Lindsey, S.; Waid, S.; Hobler, G.; Wanzenböck, H.D.; Bertagnolli, E.

    2014-01-01

    FIB technologies possess a unique ability to form topographies that are difficult or impossible to generate with binary etching through typical photo-lithography. The ability to arbitrarily vary the spatial dose distribution and therefore the amount of milling opens possibilities for the production of a wide range of functional structures with applications in biology, chemistry, and optics. However in practice, the realization of these goals is made difficult by the angular dependence of the sputtering yield and redeposition effects that vary as the topography evolves. An inverse modeling algorithm that optimizes dose profiles, defined as the superposition of time invariant pixel dose profiles (determined from the beam parameters and pixel dwell times), is presented. The response of the target to a set of pixel dwell times in modeled by numerical continuum simulations utilizing 1st and 2nd order sputtering and redeposition, the resulting surfaces are evaluated with respect to a target topography in an error minimization routine. Two algorithms for the parameterization of pixel dwell times are presented, a direct pixel dwell time method, and an abstracted method that uses a refineable piecewise linear cage function to generate pixel dwell times from a minimal number of parameters. The cage function method demonstrates great flexibility and efficiency as compared to the direct fitting method with performance enhancements exceeding ∼10× as compared to direct fitting for medium to large simulation sets. Furthermore, the refineable nature of the cage function enables solutions to adapt to the desired target function. The optimization algorithm, although working with stationary dose profiles, is demonstrated to be applicable also outside the quasi-static approximation. Experimental data confirms the viability of the solutions for 5 × 7 μm deep lens like structures defined by 90 pixel dwell times

  8. Mixed Modeling of a SAW Delay Line Using VHDL-AMS

    Science.gov (United States)

    Wilson, William C.; Atkinson, Gary M.

    2006-01-01

    To aid in the development of SAW sensors for aerospace applications we have created a model of a SAW Delay line using VHDL. The model implements the Impulse Response method to calculate the frequency response, impedance, and insertion loss. The model includes optimization for the number of finger pairs in the IDTs and for the aperture height. This paper presents the model and the results from the model for a SAW delay line design.

  9. Failed Radiatively Accelerated Dusty Outflow Model of the Broad Line Region in Active Galactic Nuclei. I. Analytical Solution

    Energy Technology Data Exchange (ETDEWEB)

    Czerny, B.; Panda, S.; Wildy, C.; Sniegowska, M. [Center for Theoretical Physics, Polish Academy of Sciences, Al. Lotników 32/46, 02-668 Warsaw (Poland); Li, Yan-Rong; Wang, J.-M. [Key Laboratory for Particle Astrophysics, Institute of High Energy Physics, Chinese Academy of Sciences, 19B Yuquan Road, Beijing 100049 (China); Hryniewicz, K.; Sredzinska, J. [Copernicus Astronomical Center, Polish Academy of Sciences, Bartycka 18, 00-716 Warsaw (Poland); Karas, V., E-mail: bcz@cft.edu.pl [Astronomical Institute, Academy of Sciences, Bocni II 1401, CZ-141 00 Prague (Czech Republic)

    2017-09-10

    The physical origin of the broad line region in active galactic nuclei is still unclear despite many years of observational studies. The reason is that the region is unresolved, and the reverberation mapping results imply a complex velocity field. We adopt a theory-motivated approach to identify the principal mechanism responsible for this complex phenomenon. We consider the possibility that the role of dust is essential. We assume that the local radiation pressure acting on the dust in the accretion disk atmosphere launches the outflow of material, but higher above the disk the irradiation from the central parts causes dust evaporation and a subsequent fallback. This failed radiatively accelerated dusty outflow is expected to represent the material forming low ionization lines. In this paper we formulate simple analytical equations to describe the cloud motion, including the evaporation phase. The model is fully described just by the basic parameters of black hole mass, accretion rate, black hole spin, and viewing angle. We study how the spectral line generic profiles correspond to this dynamic. We show that the virial factor calculated from our model strongly depends on the black hole mass in the case of enhanced dust opacity, and thus it then correlates with the line width. This could explain why the virial factor measured in galaxies with pseudobulges differs from that obtained from objects with classical bulges, although the trend predicted by the current version of the model is opposite to the observed trend.

  10. Mass movement hazard assessment model in the slope profile

    Science.gov (United States)

    Colangelo, A. C.

    2003-04-01

    The central aim of this work is to assess the spatial behaviour of critical depths for slope stability and the behaviour of their correlated variables in the soil-regolith transition along slope profiles over granite, migmatite and mica-schist parent materials in an humid tropical environment. In this way, we had making measures of shear strength for residual soils and regolith materials with soil "Cohron Sheargraph" apparatus and evaluated the shear stress tension behaviour at soil-regolith boundary along slope profiles, in each referred lithology. In the limit equilibrium approach applied here we adapt the infinite slope model for slope analysis in whole slope profile by means of finite element solution like in Fellenius or Bishop methods. In our case, we assume that the potential rupture surface occurs at soil-regolith or soil-rock boundary in slope material. For each slice, the factor of safety was calculated considering the value of shear strength (cohesion and friction) of material, soil-regolith boundary depth, soil moisture level content, slope gradient, top of subsurface flow gradient, apparent soil bulk density. The correlations showed the relative weight of cohesion, internal friction angle, apparent bulk density of soil materials and slope gradient variables with respect to the evaluation of critical depth behaviour for different simulated soil moisture content levels at slope profile scale. Some important results refer to the central role of behaviour of soil bulk-density variable along slope profile during soil evolution and in present day, because the intense clay production, mainly Kaolinite and Gibbsite at B and C-horizons, in the humid tropical environment. A increase in soil clay content produce a fall of friction angle and bulk density of material, specially when some montmorillonite or illite clay are present. We have observed too at threshold conditions, that a slight change in soil bulk-density value may disturb drastically the equilibrium of

  11. Integrated model for line balancing with workstation inventory management

    Directory of Open Access Journals (Sweden)

    Dilip Roy

    2010-06-01

    Full Text Available In this paper, we address the optimization of an integrated line balancing process with workstation inventory management. While doing so, we have studied the interconnection between line balancing and its conversion process. Almost each and every moderate to large manufacturing industry depends on a long and integrated supply chain, consisting of inbound logistic, conversion process and outbound logistic. In this sense an approach addresses a very general problem of integrated line balancing. Research works reported in the literature so far mainly deals with minimization of cost for inbound and outbound logistic subsystems. In most of the cases conversion process has been ignored. We suggest a generic approach for linking the balancing of the line of production in the conversion area with the customers’ rate of demand in the market and for configuring the related stock chambers. Thus, the main aim of this paper is to translate the underlying problem in the form of mixed nonlinear programming problem and design the optimum supply chain so that the total inventory cost and the cost of balancing loss of the conversion process is jointly minimized and ideal cycle time of the production process is determined along with ideal sizes of the stock chambers. A numerical example has been added to demonstrate the suitability of our approach.

  12. Modeling Software Product Line Engineering with Essence Framework

    NARCIS (Netherlands)

    Tüzün, Eray; Giray, Görkem; Tekinerdogan, B.; Macit, Yagup

    2018-01-01

    Although several software product line engineering (SPLE) methods have been described in the literature, adopting these methods in practice is often not straightforward. Thorough understanding of the methods and their artefacts is necessary to apply the methods in a proper manner, and likewise

  13. Fugitive coke oven gas emission profile by continuous line averaged open-path Fourier transform infrared monitoring.

    Science.gov (United States)

    Lin, Chitsan; Liou, Naiwei; Chang, Pao-Erh; Yang, Jen-Chin; Sun, Endy

    2007-04-01

    Although most coke oven research is focused on the emission of polycyclic aromatic hydrocarbons, well-known carcinogens, little has been done on the emission of volatile organic compounds, some of which are also thought to be hazardous to workers and the environment. To profile coke oven gas (COG) emissions, we set up an open-path Fourier transform infrared (OP-FTIR) system on top of a battery of coke ovens at a steel mill located in Southern Taiwan and monitored average emissions in a coke processing area for 16.5 hr. Nine COGs were identified, including ammonia, CO, methane, ethane, ethylene, acetylene, propylene, cyclohexane, and O-xylene. Time series plots indicated that the type of pollutants differed over time, suggesting that different emission sources (e.g., coke pushing, quench tower, etc.) were involved at different times over the study period. This observation was confirmed by the low cross-correlation coefficients of the COGs. It was also found that, with the help of meteorological analysis, the data collected by the OP-FTIR system could be analyzed effectively to characterize differences in the location of sources. Although the traditional single-point samplings of emissions involves sampling various sources in a coke processing area at several different times and is a credible profiling of emissions, our findings strongly suggest that they are not nearly as efficient or as cost-effective as the continuous line average method used in this study. This method would make it easier and cheaper for engineers and health risk assessors to identify and to control fugitive volatile organic compound emissions and to improve environmental health.

  14. Bayesian Predictive Modeling Based on Multidimensional Connectivity Profiling

    Science.gov (United States)

    Herskovits, Edward

    2015-01-01

    Dysfunction of brain structural and functional connectivity is increasingly being recognized as playing an important role in many brain disorders. Diffusion tensor imaging (DTI) and functional magnetic resonance (fMR) imaging are widely used to infer structural and functional connectivity, respectively. How to combine structural and functional connectivity patterns for predictive modeling is an important, yet open, problem. We propose a new method, called Bayesian prediction based on multidimensional connectivity profiling (BMCP), to distinguish subjects at the individual level based on structural and functional connectivity patterns. BMCP combines finite mixture modeling and Bayesian network classification. We demonstrate its use in distinguishing young and elderly adults based on DTI and resting-state fMR data. PMID:25924166

  15. Gene expression profile in response to doxorubicin-rapamycin combined treatment of HER-2-overexpressing human mammary epithelial cell lines.

    Science.gov (United States)

    Trapé, Adriana Priscila; Katayama, Maria Lucia Hirata; Roela, Rosimeire Aparecida; Brentani, Helena; Ravacci, Graziela Rosa; de Araujo Lima, Leandro; Brentani, Maria Mitzi

    2012-02-01

    HER-2-positive breast cancers frequently sustain elevated AKT/mTOR signaling, which has been associated with resistance to doxorubicin treatment. Here, we investigated whether rapamycin, an mTOR inhibitor, increased the sensitivity to doxorubicin therapy in two HER-2-overexpressing cell lines: C5.2, which was derived from the parental HB4a by transfection with HER-2 and SKBR3, which exhibits HER-2 amplification. The epithelial mammary cell line HB4a was also analyzed. The combined treatment using 20 nmol/L of rapamycin and 30 nmol/L of doxorubicin arrested HB4a and C5.2 cells in S to G(2)-M, whereas SKBR3 cells showed an increase in the G(0)-G(1) phase. Rapamycin increased the sensitivity to doxorubicin in HER-2-overexpressing cells by approximately 2-fold, suggesting that the combination displayed a more effective antiproliferative action. Gene expression profiling showed that these results might reflect alterations in genes involved in canonical pathways related to purine metabolism, oxidative phosphorylation, protein ubiquitination, and mitochondrial dysfunction. A set of 122 genes modulated by the combined treatment and specifically related to HER-2 overexpression was determined by finding genes commonly regulated in both C5.2 and SKBR3 that were not affected in HB4a cells. Network analysis of this particular set showed a smaller subgroup of genes in which coexpression pattern in HB4a cells was disrupted in C5.2 and SKBR3. Altogether, our data showed a subset of genes that might be more robust than individual markers in predicting the response of HER-2-overexpressing breast cancers to doxorubicin and rapamycin combination.

  16. Improvement plans for the RHIC/AGS on-line model environments

    Energy Technology Data Exchange (ETDEWEB)

    Brown,K.A.; Ahrens, L.; Beebe-Wang, J.; Morris, J.; Nemesure, S.; Robert-Demolaize, G.; Satogata, T.; Schoefer, V.; Tepikian, S.

    2009-08-31

    The on-line models for Relativistic Ion Collider (RHIC) and the RHIC pre-injectors (the AGS and the AGS Booster) can be thought of as containing our best collective knowledge of these accelerators. As we improve these on-line models we are building the framework to have a sophisticated model-based controls system. Currently the RHIC on-line model is an integral part of the controls system, providing the interface for tune control, chromaticity control, and non-linear chromaticity control. What we discuss in this paper is our vision of the future of the on-line model environment for RHIC and the RHIC preinjectors. Although these on-line models are primarily used as Courant-Snyder parameter calculators using live machine settings, we envision expanding these environments to encompass many other problem domains.

  17. OBSERVATIONS AND SIMULATIONS OF THE Na i D{sub 1} LINE PROFILES IN AN M-CLASS SOLAR FLARE

    Energy Technology Data Exchange (ETDEWEB)

    Kuridze, D.; Mathioudakis, M.; Jess, D. B.; Grant, S. D. T.; Kawate, T.; Keenan, F. P. [Astrophysics Research Centre, School of Mathematics and Physics, Queen’s University Belfast, Belfast BT7 1NN (United Kingdom); Christian, D. J. [Department of Physics and Astronomy, California State University, Northridge, CA 91330 (United States); Kowalski, A. F.; Allred, J. C. [NASA/Goddard Space Flight Center, Code 671, Greenbelt, MD 20771 (United States); Simões, P. J. A. [SUPA School of Physics and Astronomy, University of Glasgow, Glasgow G12 8QQ (United Kingdom)

    2016-12-01

    We study the temporal evolution of the Na i D{sub 1} line profiles in the M3.9 flare SOL2014-06-11T21:03 UT, using observations at high spectral resolution obtained with the Interferometric Bidimensional Spectrometer instrument on the Dunn Solar Telescope combined with radiative hydrodynamic simulations. Our results show a significant increase in the intensities of the line core and wings during the flare. The analysis of the line profiles from the flare ribbons reveals that the Na i D{sub 1} line has a central reversal with excess emission in the blue wing (blue asymmetry). We combine RADYN and RH simulations to synthesize Na i D{sub 1} line profiles of the flaring atmosphere and find good agreement with the observations. Heating with a beam of electrons modifies the radiation field in the flaring atmosphere and excites electrons from the ground state 3s {sup 2}S to the first excited state 3p {sup 2}P, which in turn modifies the relative population of the two states. The change in temperature and the population density of the energy states make the sodium line profile revert from absorption into emission. Furthermore, the rapid changes in temperature break the pressure balance between the different layers of the lower atmosphere, generating upflow/downflow patterns. Analysis of the simulated spectra reveals that the asymmetries of the Na i D{sub 1} flare profile are produced by the velocity gradients in the lower solar atmosphere.

  18. The T47D cell line is an ideal experimental model to elucidate the progesterone-specific effects of a luminal A subtype of breast cancer.

    Science.gov (United States)

    Yu, Sungryul; Kim, Taemook; Yoo, Kyung Hyun; Kang, Keunsoo

    2017-05-06

    Cell lines are often used as in vitro tools to mimic certain types of in vivo system; several cell lines, including MCF-7 and T47D, have been widely used in breast cancer studies without investigating the cell lines' characteristics. In this study, we compared the genome-wide binding profiles of ERα, PR, and P300, and the gene expression changes between MCF-7 and T47D cell lines that represent the luminal A subtype of breast cancer. Surprisingly, several thousand genes were differentially expressed under estrogenic condition. In addition, ERα, PR, and P300 binding to regulatory elements showed distinct genomic landscapes between MCF-7 and T47D cell lines in the same hormonal states. In particular, the T47D cell line was markedly susceptible to progesterone, whereas the MCF-7 cell line did not respond to progesterone in the presence of estrogen. Consistently, changes in the expression level of the PR-target gene, STAT5A, were only observed in the T47D cell line, not the MCF-7 cell line, when treated with progesterone. Overall, the results highlight the importance of selecting appropriate cell lines for breast cancer studies and suggest that T47D cell lines can be an ideal experimental model to elucidate the progesterone-specific effects of a luminal A subtype of breast cancer. Copyright © 2017 Elsevier Inc. All rights reserved.

  19. Transfer line scattering model of therapeutic hadron beams and applications to nozzle and gantry optimization

    Directory of Open Access Journals (Sweden)

    M. Palm

    2013-01-01

    Full Text Available The field of hadron therapy is growing rapidly with several facilities currently being planned, under construction or in commissioning worldwide. In the “active scanning” irradiation technique, the target is irradiated using a narrow pencil beam that is scanned transversally over the target while the penetration depth is altered with the beam energy. Together, the target dose can thereby be conformed in all three dimensions to the shape of the tumor. For applications where a sharp lateral beam penumbra is required in order to spare critical organs from unwanted dose, beam size blowup due to scattering in on-line beam diagnostic monitors, air gaps and passive elements like the ripple filter must be minimized. This paper presents a model for transverse scattering of therapeutic hadron beams along arbitrary multislab geometries. The conventional scattering formulation, which is only applicable to a drift space, is extended to not only take beam optics into account, but also non-Gaussian transverse beam profiles which are typically obtained from the slow resonant extraction from a synchrotron. This work has been carried out during the design phase of the beam delivery system for MedAustron, an Austrian hadron therapy facility with first patient treatment planned for the end of 2015. Irradiation will be performed using active scanning with proton and carbon ion beams. As a direct application of the scattering model, design choices for the MedAustron proton gantry and treatment nozzles are evaluated with respect to the transverse beam profile at the focal point; in air and at the Bragg peak.

  20. Robustness of power-law behavior in cascading line failure models

    NARCIS (Netherlands)

    F. Sloothaak; S.C. Borst (Sem); A.P. Zwart (Bert)

    2017-01-01

    textabstractInspired by reliability issues in electric transmission networks, we use a probabilistic approach to study the occurrence of large failures in a stylized cascading line failure model. Such models capture the phenomenon where an initial line failure potentially triggers massive knock-on

  1. Alterations of urinary metabolite profile in model diabetic nephropathy

    Energy Technology Data Exchange (ETDEWEB)

    Stec, Donald F. [Vanderbilt Institute of Chemical Biology, Vanderbilt University Medical Center, Nashville, TN 37232 (United States); Wang, Suwan; Stothers, Cody [Department of Medicine, Vanderbilt University Medical Center, Nashville, TN 37232 (United States); Avance, Josh [Berea College, 1916 CPO, Berea, KY 40404 (United States); Denson, Deon [Choctaw Central High School, Philadelphia, MS 39350 (United States); Harris, Raymond [Department of Medicine, Vanderbilt University Medical Center, Nashville, TN 37232 (United States); Voziyan, Paul, E-mail: paul.voziyan@vanderbilt.edu [Department of Medicine, Vanderbilt University Medical Center, Nashville, TN 37232 (United States)

    2015-01-09

    Highlights: • {sup 1}H NMR spectroscopy was employed to study urinary metabolite profile in diabetic mouse models. • Mouse urinary metabolome showed major changes that are also found in human diabetic nephropathy. • These models can be new tools to study urinary biomarkers that are relevant to human disease. - Abstract: Countering the diabetes pandemic and consequent complications, such as nephropathy, will require better understanding of disease mechanisms and development of new diagnostic methods. Animal models can be versatile tools in studies of diabetic renal disease when model pathology is relevant to human diabetic nephropathy (DN). Diabetic models using endothelial nitric oxide synthase (eNOS) knock-out mice develop major renal lesions characteristic of human disease. However, it is unknown whether they can also reproduce changes in urinary metabolites found in human DN. We employed Type 1 and Type 2 diabetic mouse models of DN, i.e. STZ-eNOS{sup −/−} C57BLKS and eNOS{sup −/−} C57BLKS db/db, with the goal of determining changes in urinary metabolite profile using proton nuclear magnetic resonance (NMR). Six urinary metabolites with significantly lower levels in diabetic compared to control mice have been identified. Specifically, major changes were found in metabolites from tricarboxylic acid (TCA) cycle and aromatic amino acid catabolism including 3-indoxyl sulfate, cis-aconitate, 2-oxoisocaproate, N-phenyl-acetylglycine, 4-hydroxyphenyl acetate, and hippurate. Levels of 4-hydroxyphenyl acetic acid and hippuric acid showed the strongest reverse correlation to albumin-to-creatinine ratio (ACR), which is an indicator of renal damage. Importantly, similar changes in urinary hydroxyphenyl acetate and hippurate were previously reported in human renal disease. We demonstrated that STZ-eNOS{sup −/−} C57BLKS and eNOS{sup −/−} C57BLKS db/db mouse models can recapitulate changes in urinary metabolome found in human DN and therefore can be

  2. Alterations of urinary metabolite profile in model diabetic nephropathy

    International Nuclear Information System (INIS)

    Stec, Donald F.; Wang, Suwan; Stothers, Cody; Avance, Josh; Denson, Deon; Harris, Raymond; Voziyan, Paul

    2015-01-01

    Highlights: • 1 H NMR spectroscopy was employed to study urinary metabolite profile in diabetic mouse models. • Mouse urinary metabolome showed major changes that are also found in human diabetic nephropathy. • These models can be new tools to study urinary biomarkers that are relevant to human disease. - Abstract: Countering the diabetes pandemic and consequent complications, such as nephropathy, will require better understanding of disease mechanisms and development of new diagnostic methods. Animal models can be versatile tools in studies of diabetic renal disease when model pathology is relevant to human diabetic nephropathy (DN). Diabetic models using endothelial nitric oxide synthase (eNOS) knock-out mice develop major renal lesions characteristic of human disease. However, it is unknown whether they can also reproduce changes in urinary metabolites found in human DN. We employed Type 1 and Type 2 diabetic mouse models of DN, i.e. STZ-eNOS −/− C57BLKS and eNOS −/− C57BLKS db/db, with the goal of determining changes in urinary metabolite profile using proton nuclear magnetic resonance (NMR). Six urinary metabolites with significantly lower levels in diabetic compared to control mice have been identified. Specifically, major changes were found in metabolites from tricarboxylic acid (TCA) cycle and aromatic amino acid catabolism including 3-indoxyl sulfate, cis-aconitate, 2-oxoisocaproate, N-phenyl-acetylglycine, 4-hydroxyphenyl acetate, and hippurate. Levels of 4-hydroxyphenyl acetic acid and hippuric acid showed the strongest reverse correlation to albumin-to-creatinine ratio (ACR), which is an indicator of renal damage. Importantly, similar changes in urinary hydroxyphenyl acetate and hippurate were previously reported in human renal disease. We demonstrated that STZ-eNOS −/− C57BLKS and eNOS −/− C57BLKS db/db mouse models can recapitulate changes in urinary metabolome found in human DN and therefore can be useful new tools in

  3. Model-based testing of software product lines

    OpenAIRE

    Metzger, Andreas; Pohl, Klaus; Reis, Sacha; Reuys, A

    2006-01-01

    peer-reviewed Due to the rising demand for individualised software products and software-intensive systems (e.g.,mobile phone or automotive software), organizations are faced with the challenge to provide a diversity of software systems at low costs, in short time, and with high quality. Software product line engineering is the approach for tackling this challenge and has proven its effectiveness in numerous industrial success stories, including Siemens, ABB, Boeing, Hewlett-Packard, Phili...

  4. Large Eddy Simulation of wind turbines using the actuator line model and immersed boundary method

    Science.gov (United States)

    Santoni, Christian; Carrasquillo-Solís, Kenneth; Leonardi, Stefano

    2014-11-01

    Despite the growth of the energy extracted from wind turbines, the flow physics is still not fully understood even under ideal operational conditions. Large Eddy Simulations of the turbulent flow past a wind turbine in a channel have been performed. The numerical setup reproduces the experiment performed in a wind tunnel at the Norwegian University of Science and Technology (NUST). The code is based on a finite difference scheme with a fractional step and Runge-Kutta, which couples the actuator line model (ALM) and the Immersed Boundary Method (IBM). Two simulations were performed, one neglecting the tower and nacelle resulting in the rotating blades only, the other modeling both the rotating blades as well as the tower and nacelle with IBM. Results relative to the simulation with tower and nacelle have a very good agreement with experiments. Profiles of turbulent kinetic energy shows that the effect of the tower and nacelle is not confined to the hub region but extend to the entire rotor. In addition we placed the wind turbine over an undulated topography to understand how it affects the performances and wake of a wind turbine. Comparison with the results obtained for the smooth wall show an interaction between the rough wall and the wake. The numerical simulations were performed on XSEDE TACC under Grant No. CTS070066. The present work is supported by the National Science Foundation (NSF), Grant IIA-1243482 (WINDINSPIRE).

  5. Quality properties and expression profiling of protein disulfide isomerase genes during grain development of three spring wheat near isogenic lines

    Directory of Open Access Journals (Sweden)

    Dong Liwei

    2016-01-01

    Full Text Available Three wheat glutenin near isogenic lines (NILs CB037A, CB037B and CB037C were used to investigate their quality properties and the transcriptional expression profiles of PDI gene family during grain development. Our purpose is to understand the relationships between the dynamic expression of different PDI genes and glutenin allelic compositions related to gluten quality. The results showed that glutenin allelic variations had no significant effects on main agronomic traits and yield performance, but resulted in clear gluten quality changes. CB037B with 5+10 subunits had higher glutenin macropolymer (GMP content and better breadmaking quality than CB037A with 2+12 while the lack of Glu-B3h encoding one abundant B-subunit in CB037C significantly reduced GMP content, dough strength and breadmaking quality. The dynamic expression patterns of eight protein disulfide isomerase (PDI genes during grain development detected by quantitative real-time polymerase chain reaction (qRT-PCR showed the close correlations between higher expression levels of PDI3-1, PDI5-1 and PDI8-1 and the presence of 5+10 subunits. Meanwhile, Glu-B3h silence resulted in significant decrease of expression levels of five PDI genes (PDI3-1, PDI5-1, PDI6-1, PDI7-2 and PDI8-1, suggesting the vital roles of certain PDI genes in glutenin and GMP synthesis and gluten quality formation.

  6. Transcriptome Profiling of Caco-2 Cancer Cell Line following Treatment with Extracts from Iodine-Biofortified Lettuce (Lactuca sativa L..

    Directory of Open Access Journals (Sweden)

    Aneta A Koronowicz

    Full Text Available Although iodization of salt is the most common method used to obtain iodine-enriched food, iodine deficiency disorders are still a global health problem and profoundly affect the quality of human life. Iodine is required for the synthesis of thyroid hormones, which are crucial regulators of human metabolism, cell growth, proliferation, apoptosis and have been reported to be involved in carcinogenesis. In this study, for the first time, we evaluated the effect of iodine-biofortified lettuce on transcriptomic profile of Caco-2 cancer cell line by applying the Whole Human Genome Microarray assay. We showed 1326 differentially expressed Caco-2 transcripts after treatment with iodine-biofortified (BFL and non-fortified (NFL lettuce extracts. We analysed pathways, molecular functions, biological processes and protein classes based on comparison between BFL and NFL specific genes. Iodine, which was expected to act as a free ion (KI-NFL or at least in part to be incorporated into lettuce macromolecules (BFL, differently regulated pathways of numerous transcription factors leading to different cellular effects. In this study we showed the inhibition of Caco-2 cells proliferation after treatment with BFL, but not potassium iodide (KI, and BFL-mediated induction of mitochondrial apoptosis and/or cell differentiation. Our results showed that iodine-biofortified plants can be effectively used by cells as an alternative source of this trace element. Moreover, the observed differences in action of both iodine sources may suggest a potential of BFL in cancer treatment.

  7. Alterations to the protein profile of bladder carcinoma cell lines induced by plant extract MINA-05 in vitro.

    Science.gov (United States)

    Nguyen-Khuong, Terry; White, Melanie Y; Hung, Tzong-Tyng; Seeto, Shona; Thomas, Melissa L; Fitzgerald, Anna M; Martucci, Carlos E; Luk, Sharon; Pang, Shiu-Fu; Russell, Pamela J; Walsh, Bradley J

    2009-04-01

    Bladder cancer (BLCa) is a severe urological cancer of both men and women that commonly recurs and once invasive, is difficult to treat. MINA-05 (CK Life Sciences Int'l, Hong Kong) is a derivative of complex botanical extracts, shown to reduce cellular proliferation of bladder and prostate carcinomas. We tested the effects of MINA-05 against human BLCa cell sublines, B8, B8-RSP-GCK, B8-RSP-LN and C3, from a transitional cell carcinoma, grade IV, to determine the molecular targets of treatment by observing the cellular protein profile. Cells were acclimatised for 48 h then treated for 72 h with concentrations of MINA-05 reflecting 1/2 IC(50), IC(50) and 2 x IC(50) (n = 3) or with vehicle, (0.5% DMSO). Dose-dependant changes in protein abundance were detected and characterised using 2-dimensional electrophoresis and MS. We identified 10 proteins that underwent changes in abundance, pI and/or molecular mass in response to treatment. MINA-05 was shown to influence proteins across numerous functional classes including cytoskeletal proteins, energy metabolism proteins, protein degradation proteins and tumour suppressors, suggesting a global impact on these cell lines. This study implies that the ability of MINA-05 to retard cellular proliferation is attributed to its ability to alter cell cycling, metabolism, protein degradation and the cancer cell environment.

  8. Recent developments in the line-by-line modeling of outgoing longwave radiation

    International Nuclear Information System (INIS)

    Buehler, S.A.; Engeln, A. von; Brocard, E.; John, V.O.; Kuhn, T.; Eriksson, P.

    2006-01-01

    High frequency resolution radiative transfer model calculations with the Atmospheric Radiative Transfer Simulator (ARTS) were used to simulate the clear-sky outgoing longwave radiative flux (OLR) at the top of the atmosphere. Compared to earlier calculations by Clough and coworkers the model used a spherical atmosphere instead of a plane parallel atmosphere, updated spectroscopic parameters from HITRAN, and updated continuum parameterizations from Mlawer and coworkers. These modifications lead to a reduction in simulated OLR by approximately 4.1%, the largest part, approximately 2.5%, being due to the absence of the plane parallel approximation. As a simple application of the new model, the sensitivity of OLR to changes in humidity, carbon dioxide concentration, and temperature were investigated for different cloud-free atmospheric scenarios. It was found that for the tropical scenario a 20% change in humidity has a larger impact than a doubling of the carbon dioxide concentration. The sensitive altitude region for temperature and humidity changes is the entire free troposphere, including the upper troposphere where humidity data quality is poor

  9. MEASURING NEUTRON STAR RADII VIA PULSE PROFILE MODELING WITH NICER

    Energy Technology Data Exchange (ETDEWEB)

    Özel, Feryal; Psaltis, Dimitrios; Bauböck, Michi [Astronomy Department, University of Arizona, 933 N. Cherry Ave., Tucson, AZ 85721 (United States); Arzoumanian, Zaven [Center for Research and Exploration in Space Science and Technology/USRA, NASA Goddard Space Flight Center, Code 662, Greenbelt, MD 20771 (United States); Morsink, Sharon, E-mail: fozel@email.arizona.edu [Department of Physics, University of Alberta, 11455 Saskatchewan Drive, Edmonton, AB T6G 2E1 (Canada)

    2016-11-20

    The Neutron-star Interior Composition Explorer is an X-ray astrophysics payload that will be placed on the International Space Station . Its primary science goal is to measure with high accuracy the pulse profiles that arise from the non-uniform thermal surface emission of rotation-powered pulsars. Modeling general relativistic effects on the profiles will lead to measuring the radii of these neutron stars and to constraining their equation of state. Achieving this goal will depend, among other things, on accurate knowledge of the source, sky, and instrument backgrounds. We use here simple analytic estimates to quantify the level at which these backgrounds need to be known in order for the upcoming measurements to provide significant constraints on the properties of neutron stars. We show that, even in the minimal-information scenario, knowledge of the background at a few percent level for a background-to-source countrate ratio of 0.2 allows for a measurement of the neutron star compactness to better than 10% uncertainty for most of the parameter space. These constraints improve further when more realistic assumptions are made about the neutron star emission and spin, and when additional information about the source itself, such as its mass or distance, are incorporated.

  10. An empirical Bayes model for gene expression and methylation profiles in antiestrogen resistant breast cancer

    Directory of Open Access Journals (Sweden)

    Huang Tim

    2010-11-01

    Full Text Available Abstract Background The nuclear transcription factor estrogen receptor alpha (ER-alpha is the target of several antiestrogen therapeutic agents for breast cancer. However, many ER-alpha positive patients do not respond to these treatments from the beginning, or stop responding after being treated for a period of time. Because of the association of gene transcription alteration and drug resistance and the emerging evidence on the role of DNA methylation on transcription regulation, understanding of these relationships can facilitate development of approaches to re-sensitize breast cancer cells to treatment by restoring DNA methylation patterns. Methods We constructed a hierarchical empirical Bayes model to investigate the simultaneous change of gene expression and promoter DNA methylation profiles among wild type (WT and OHT/ICI resistant MCF7 breast cancer cell lines. Results We found that compared with the WT cell lines, almost all of the genes in OHT or ICI resistant cell lines either do not show methylation change or hypomethylated. Moreover, the correlations between gene expression and methylation are quite heterogeneous across genes, suggesting the involvement of other factors in regulating transcription. Analysis of our results in combination with H3K4me2 data on OHT resistant cell lines suggests a clear interplay between DNA methylation and H3K4me2 in the regulation of gene expression. For hypomethylated genes with alteration of gene expression, most (~80% are up-regulated, consistent with current view on the relationship between promoter methylation and gene expression. Conclusions We developed an empirical Bayes model to study the association between DNA methylation in the promoter region and gene expression. Our approach generates both global (across all genes and local (individual gene views of the interplay. It provides important insight on future effort to develop therapeutic agent to re-sensitize breast cancer cells to treatment.

  11. An empirical Bayes model for gene expression and methylation profiles in antiestrogen resistant breast cancer.

    Science.gov (United States)

    Jeong, Jaesik; Li, Lang; Liu, Yunlong; Nephew, Kenneth P; Huang, Tim Hui-Ming; Shen, Changyu

    2010-11-25

    The nuclear transcription factor estrogen receptor alpha (ER-alpha) is the target of several antiestrogen therapeutic agents for breast cancer. However, many ER-alpha positive patients do not respond to these treatments from the beginning, or stop responding after being treated for a period of time. Because of the association of gene transcription alteration and drug resistance and the emerging evidence on the role of DNA methylation on transcription regulation, understanding of these relationships can facilitate development of approaches to re-sensitize breast cancer cells to treatment by restoring DNA methylation patterns. We constructed a hierarchical empirical Bayes model to investigate the simultaneous change of gene expression and promoter DNA methylation profiles among wild type (WT) and OHT/ICI resistant MCF7 breast cancer cell lines. We found that compared with the WT cell lines, almost all of the genes in OHT or ICI resistant cell lines either do not show methylation change or hypomethylated. Moreover, the correlations between gene expression and methylation are quite heterogeneous across genes, suggesting the involvement of other factors in regulating transcription. Analysis of our results in combination with H3K4me2 data on OHT resistant cell lines suggests a clear interplay between DNA methylation and H3K4me2 in the regulation of gene expression. For hypomethylated genes with alteration of gene expression, most (~80%) are up-regulated, consistent with current view on the relationship between promoter methylation and gene expression. We developed an empirical Bayes model to study the association between DNA methylation in the promoter region and gene expression. Our approach generates both global (across all genes) and local (individual gene) views of the interplay. It provides important insight on future effort to develop therapeutic agent to re-sensitize breast cancer cells to treatment.

  12. ON-LINE CALCULATOR: FORWARD CALCULATION JOHNSON ETTINGER MODEL

    Science.gov (United States)

    On-Site was developed to provide modelers and model reviewers with prepackaged tools ("calculators") for performing site assessment calculations. The philosophy behind OnSite is that the convenience of the prepackaged calculators helps provide consistency for simple calculations,...

  13. ON-LINE CALCULATOR: JOHNSON ETTINGER VAPOR INTRUSION MODEL

    Science.gov (United States)

    On-Site was developed to provide modelers and model reviewers with prepackaged tools ("calculators") for performing site assessment calculations. The philosophy behind OnSite is that the convenience of the prepackaged calculators helps provide consistency for simple calculations,...

  14. Structural acoustics model of the violin radiativity profile.

    Science.gov (United States)

    Bissinger, George

    2008-12-01

    Violin radiativity profiles are dominated by the Helmholtz-like A0 cavity mode ( approximately 280 Hz), first corpus bending modes B1(-) and B1(+) ( approximately 500 Hz), and BH and bridge-filter peaks ( approximately 2.4 kHz and approximately 3.5 kHz, respectively), with falloff above approximately 4 kHz. The B1 modes-dependent on two low-lying free-plate modes--are proposed to excite A0 via coupling to B1-driven in-phase f-hole volume flows. VIOCADEAS data show that A0 radiativity increases primarily as A0-B1(-) frequency difference decreases, consistent with Meinel's 1937 experiment for too-thick/too-thin plate thicknesses, plus sound post removal and violin octet baritone results. The vibration-->acoustic energy filter, F(RAD), computed from shape-material-independent radiation and total damping, peaks at the critical frequency f(crit), estimated from a free-plate mode by analogy to flat-plate bending. Experimentally, f(crit) decreased as this plate mode (and B1(+)) frequency increased. Simulations show that increasing plate thicknesses lowers f(crit), reduces F(RAD), and moves the spectral balance toward lower frequencies. Incorporating string-->corpus filters (including bridge versus bridge-island impedances) provides a model for overall violin radiativity. This model-with B1 and A0-B1 couplings, and f(crit) (computed from a free-plate mode important to B1) strongly affecting the lowest and highest parts of the radiativity profile-substantiates prior empirical B1--sound quality linkages.

  15. Effect of splitting a mixed-model line on shortening the line length under open- and closed-boundary working area settings

    Science.gov (United States)

    Zhang, Donghao; Matsuura, Haruki; Asada, Akiko

    2017-04-01

    Some automobile factories have segmented mixed-model production lines into shorter sub-lines according to part group, such as engine, trim, and powertrain. The effects of splitting a line into sub-lines have been reported from the standpoints of worker motivation, productivity improvement, and autonomy based on risk spreading. There has been no mention of the possibility of shortening the line length by altering the product sequence using sub-lines. The purpose of the present paper is to determine the conditions under which sub-lines reduce the line length and the degree to which the line length may be shortened. The line lengths for a non-split line and a line that has been split into sub-lines are compared using three methods for determining the working area, the standard closed boundary, the optimized open boundary, and real-life constant-length stations. The results are discussed by analyzing the upper and lower bounds of the line length. Based on these results, a procedure for deciding whether or not to split a production line is proposed.

  16. Gamma-Normal-Gamma Mixture Model for Detecting Differentially Methylated Loci in Three Breast Cancer Cell Lines

    Directory of Open Access Journals (Sweden)

    Joe Gray

    2007-01-01

    Full Text Available With state-of-the-art microarray technologies now available for whole genome CpG island (CGI methylation profiling, there is a need to develop statistical models that are specifically geared toward the analysis of such data. In this article, we propose a Gamma-Normal-Gamma (GNG mixture model for describing three groups of CGI loci: hypomethylated, undifferentiated, and hypermethylated, from a single methylation microarray. This model was applied to study the methylation signatures of three breast cancer cell lines: MCF7, T47D, and MDAMB361. Biologically interesting and interpretable results are obtained, which highlights the heterogeneity nature of the three cell lines. This underlies the premise for the need of analyzing each of the microarray slides individually as opposed to pooling them together for a single analysis. Our comparisons with the fitted densities from the Normal-Uniform (NU mixture model in the literature proposed for gene expression analysis show an improved goodness of fit of the GNG model over the NU model. Although the GNG model was proposed in the context of single-slide methylation analysis, it can be readily adapted to analyze multi-slide methylation data as well as other types of microarray data.

  17. Metabolic profiling of two maize (Zea mays L.) inbred lines inoculated with the nitrogen fixing plant-interacting bacteria Herbaspirillum seropedicae and Azospirillum brasilense.

    Science.gov (United States)

    Brusamarello-Santos, Liziane Cristina; Gilard, Françoise; Brulé, Lenaïg; Quilleré, Isabelle; Gourion, Benjamin; Ratet, Pascal; Maltempi de Souza, Emanuel; Lea, Peter J; Hirel, Bertrand

    2017-01-01

    Maize roots can be colonized by free-living atmospheric nitrogen (N2)-fixing bacteria (diazotrophs). However, the agronomic potential of non-symbiotic N2-fixation in such an economically important species as maize, has still not been fully exploited. A preliminary approach to improve our understanding of the mechanisms controlling the establishment of such N2-fixing associations has been developed, using two maize inbred lines exhibiting different physiological characteristics. The bacterial-plant interaction has been characterized by means of a metabolomic approach. Two established model strains of Nif+ diazotrophic bacteria, Herbaspirillum seropedicae and Azospirillum brasilense and their Nif- couterparts defficient in nitrogenase activity, were used to evaluate the impact of the bacterial inoculation and of N2 fixation on the root and leaf metabolic profiles. The two N2-fixing bacteria have been used to inoculate two genetically distant maize lines (FV252 and FV2), already characterized for their contrasting physiological properties. Using a well-controlled gnotobiotic experimental system that allows inoculation of maize plants with the two diazotrophs in a N-free medium, we demonstrated that both maize lines were efficiently colonized by the two bacterial species. We also showed that in the early stages of plant development, both bacterial strains were able to reduce acetylene, suggesting that they contain functional nitrogenase activity and are able to efficiently fix atmospheric N2 (Fix+). The metabolomic approach allowed the identification of metabolites in the two maize lines that were representative of the N2 fixing plant-bacterial interaction, these included mannitol and to a lesser extend trehalose and isocitrate. Whilst other metabolites such as asparagine, although only exhibiting a small increase in maize roots following bacterial infection, were specific for the two Fix+ bacterial strains, in comparison to their Fix- counterparts. Moreover, a number

  18. 1.4D quasistatic profile model of transport in a field-reversed configuration (FRC)

    International Nuclear Information System (INIS)

    Steinhauer, L.C.

    1990-01-01

    Global confinement models are useful for determining how a given transport mechanism (dependent on local parameters) translates into global confinement times. Such models are also useful for inferring the overall magnitudes of transport rates, and limited information about their spatial profiles. They are especially important in a field reversed configuration (FRC) where the equilibrium and transport rates are so intimately coupled, and where the flux loss time is such an important factor. An earlier global FRC confinement model, sometimes called QUASI, was based on the assumption of a quasi-steady equilibrium. The equilibrium was assumed to have square-ends with some features of 2D equilibria: (1) equal pressure on inner and outer branches of the flux lines; and (2) average-beta relation. Models of this type have been called 1-1/4D transport models. The same general approach has now been applied in a straightforward way to an equilibrium with realistic axial structure. This might be called a 1.4D quasisteady transport model. The assumed axial structure can be that of an analytic equilibrium, or a more complicated computed equilibrium as desired. The example used here is an elongated Hill's vortex equilibrium. As will be shown later, the equilibrium is reflected by two integral quantities that appear in the quasistatic diffusion equation

  19. Characterization of human follicular thyroid cancer cell lines in preclinical mouse models

    Directory of Open Access Journals (Sweden)

    Ashley N Reeb

    2016-04-01

    Full Text Available Follicular thyroid cancer (FTC is the second most common type of thyroid cancers. In order to develop more effective personalized therapies, it is necessary to thoroughly evaluate patient-derived cell lines in in vivo preclinical models before using them to test new, targeted therapies. This study evaluates the tumorigenic and metastatic potential of a panel of three human FTC cell lines (WRO, FTC-238, and TT1609-CO2 with defined genetic mutations in two in vivo murine models: an orthotopic thyroid cancer model to study tumor progression and a tail vein injection model to study metastasis. All cell lines developed tumors in the orthotopic model, with take rates of 100%. Notably, WRO-derived tumors grew two to four times faster than tumors arising from the FTC-238 and TT2609-CO2 cell lines. These results mirrored those of a tail vein injection model for lung metastasis: one hundred percent of mice injected with WRO cells in the tail vein exhibited aggressive growth of bilateral lung metastases within 35 days. In contrast, tail vein injection of FTC-238 or TT2609-CO2 cells did not result in lung metastasis. Together, our work demonstrates that these human FTC cell lines display highly varied tumorigenic and metastatic potential in vivo with WRO being the most aggressive cell line in both orthotopic and lung metastasis models. This information will be valuable when selecting cell lines for preclinical drug testing.

  20. Distinct Splice Variants and Pathway Enrichment in the Cell Line Models of Aggressive Human Breast Cancer Subtypes

    Science.gov (United States)

    Menon, Rajasree; Im, Hogune; Zhang, Emma (Yue); Wu, Shiaw-Lin; Chen, Rui; Snyder, Michael; Hancock, William S.; Omenn, Gilbert S.

    2013-01-01

    This study was conducted as a part of the Chromosome-Centric Human Proteome Project (C-HPP) of the Human Proteome Organization. The United States team of C-HPP is focused on characterizing the protein-coding genes in chromosome 17. Despite its small size, chromosome 17 is rich in protein-coding genes, it contains many cancer-associated genes, including BRCA1, ERBB2 (Her2/neu), and TP53. The goal of this study was to examine the splice variants expressed in three ERBB2 expressed breast cancer cell line models of hormone receptor negative breast cancers by integrating RNA-Seq and proteomic mass spectrometry data. The cell-lines represent distinct phenotypic variations subtype: SKBR3 (ERBB2+ (over-expression)/ ER−/PR−; adenocarcinoma), SUM190 (ERBB2+ (over-expression)/ER−/PR−; inflammatory breast cancer) and SUM149 (ERBB2 (low expression) ER−/PR −; inflammatory breast cancer). We identified more than one splice variant for 1167 genes expressed in at least one of the three cancer cell lines. We found multiple variants of genes that are in the signaling pathways downstream of ERBB2 along with variants specific to one cancer cell line compared to the other two cancer cell lines and to normal mammary cells. The overall transcript profiles based on read counts indicated more similarities between SKBR3 and SUM190. The top-ranking Gene Ontology and BioCarta pathways for the cell-line specific variants pointed to distinct key mechanisms including: amino sugar metabolism, caspase activity, and endocytosis in SKBR3; different aspects of metabolism, especially of lipids in SUM190; cell- to-cell adhesion, integrin and ERK1/ERK2 signaling, and translational control in SUM149. The analyses indicated an enrichment in the electron transport chain processes in the ERBB2 over-expressed cell line models; and an association of nucleotide binding, RNA splicing and translation processes with the IBC models, SUM190 and SUM149. Detailed experimental studies on the distinct

  1. Holomorphic variables in magnetized brane models with continuous Wilson lines

    CERN Document Server

    Camara, Pablo G; Dudas, Emilian

    2010-01-01

    We analyze the action of the target-space modular group in toroidal type IIB orientifold compactifications with magnetized D-branes and continuous Wilson lines. The transformation of matter fields agree with that of twisted fields in heterotic compactifications, constituting a check of type I/heterotic duality. We identify the holomorphic N = 1 variables for these compactifications. Matter fields and closed string moduli are both redefined by open string moduli. The redefinition of matter fields can be read directly from the perturbative Yukawa couplings, whereas closed string moduli redefinitions are obtained from D-brane instanton superpotential couplings. The resulting expressions reproduce and generalize, in the presence of internal magnetic fields, previous results in the literature.

  2. Modeling adenovirus latency in human lymphocyte cell lines.

    Science.gov (United States)

    Zhang, Yange; Huang, Wen; Ornelles, David A; Gooding, Linda R

    2010-09-01

    Species C adenovirus establishes a latent infection in lymphocytes of the tonsils and adenoids. To understand how this lytic virus is maintained in these cells, four human lymphocytic cell lines that support the entire virus life cycle were examined. The T-cell line Jurkat ceased proliferation and died shortly after virus infection. BJAB, Ramos (B cells), and KE37 (T cells) continued to divide at nearly normal rates while replicating the virus genome. Viral genome numbers peaked and then declined in BJAB cells below one genome per cell at 130 to 150 days postinfection. Ramos and KE37 cells maintained the virus genome at over 100 copies per cell over a comparable period of time. BJAB cells maintained the viral DNA as a monomeric episome. All three persistently infected cells lost expression of the cell surface coxsackie and adenovirus receptor (CAR) within 24 h postinfection, and CAR expression remained low for at least 340 days postinfection. CAR loss proceeded via a two-stage process. First, an initial loss of cell surface staining for CAR required virus late gene expression and a CAR-binding fiber protein even while CAR protein and mRNA levels remained high. Second, CAR mRNA disappeared at around 30 days postinfection and remained low even after virus DNA was lost from the cells. At late times postinfection (day 180), BJAB cells could not be reinfected with adenovirus, even when CAR was reintroduced to the cells via retroviral transduction, suggesting that the expression of multiple genes had been stably altered in these cells following infection.

  3. Profiling Patients’ Healthcare Needs to Support Integrated, Person-Centered Models for Long-Term Disease Management (Profile: Research Design

    Directory of Open Access Journals (Sweden)

    Arianne MJ Elissen

    2016-04-01

    Full Text Available Background: This article presents the design of PROFILe, a study investigating which (biomedical and non-(biomedical patient characteristics should guide more tailored chronic care. Based on this insight, the project aims to develop and validate ‘patient profiles’ that can be used in practice to determine optimal treatment strategies for subgroups of chronically ill with similar healthcare needs and preferences. Methods/Design: PROFILe is a practice-based research comprising four phases. The project focuses on patients with type 2 diabetes. During the first study phase, patient profiles are drafted based on a systematic literature research, latent class growth modeling, and expert collaboration. In phase 2, the profiles are validated from a clinical, patient-related and statistical perspective. Phase 3 involves a discrete choice experiment to gain insight into the patient preferences that exist per profile. In phase 4, the results from all analyses are integrated and recommendations formulated on which patient characteristics should guide tailored chronic care. Discussion: PROFILe is an innovative study which uses a uniquely holistic approach to assess the healthcare needs and preferences of chronically ill. The patient profiles resulting from this project must be tested in practice to investigate the effects of tailored management on patient experience, population health and costs.

  4. THE BOSS EMISSION-LINE LENS SURVEY. IV. SMOOTH LENS MODELS FOR THE BELLS GALLERY SAMPLE

    Energy Technology Data Exchange (ETDEWEB)

    Shu, Yiping [National Astronomical Observatories, Chinese Academy of Sciences, 20A Datun Road, Chaoyang District, Beijing 100012 (China); Bolton, Adam S.; Montero-Dorta, Antonio D.; Cornachione, Matthew A.; Zheng, Zheng; Brownstein, Joel R. [Department of Physics and Astronomy, University of Utah, 115 South 1400 East, Salt Lake City, UT 84112 (United States); Mao, Shude [Physics Department and Tsinghua Centre for Astrophysics, Tsinghua University, Beijing 100084 (China); Kochanek, Christopher S. [Department of Astronomy and Center for Cosmology and Astroparticle Physics, Ohio State University, Columbus, OH 43210 (United States); Pérez-Fournon, Ismael; Marques-Chaves, Rui [Instituto de Astrofísica de Canarias, C/Vía Láctea, s/n, E-38205 San Cristóbal de La Laguna, Tenerife (Spain); Oguri, Masamune [Research Center for the Early Universe, University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033 (Japan); Ménard, Brice, E-mail: yiping.shu@nao.cas.cn [Department of Physics and Astronomy, Johns Hopkins University, Baltimore, MD 21218 (United States)

    2016-12-20

    We present Hubble Space Telescope F606W-band imaging observations of 21 galaxy-Ly α emitter lens candidates in the Baryon Oscillation Spectroscopic Survey Emission-Line Lens Survey (BELLS) for the GALaxy-Ly α EmitteR sYstems (BELLS GALLERY) survey. Seventeen systems are confirmed to be definite lenses with unambiguous evidence of multiple imaging. The lenses are primarily massive early-type galaxies (ETGs) at redshifts of approximately 0.55, while the lensed sources are Ly α emitters (LAEs) at redshifts from two to three. Although most of the lens systems are well fit by smooth lens models consisting of singular isothermal ellipsoids in an external shear field, a thorough exploration of dark substructures in the lens galaxies is required. The Einstein radii of the BELLS GALLERY lenses are, on average, 60% larger than those of the BELLS lenses because of the much higher source redshifts. This will allow for a detailed investigation of the radius evolution of the mass profile in ETGs. With the aid of the average ∼13× lensing magnification, the LAEs are frequently resolved into individual star-forming knots with a wide range of properties. They have characteristic sizes from less than 100 pc to several kiloparsecs, rest-frame far-UV apparent AB magnitudes from 29.6 to 24.2, and typical projected separations of 500 pc to 2 kpc.

  5. Average waiting time profiles of uniform DQDB model

    Energy Technology Data Exchange (ETDEWEB)

    Rao, N.S.V. [Oak Ridge National Lab., TN (United States); Maly, K.; Olariu, S.; Dharanikota, S.; Zhang, L.; Game, D. [Old Dominion Univ., Norfolk, VA (United States). Dept. of Computer Science

    1993-09-07

    The Distributed Queue Dual Bus (DQDB) system consists of a linear arrangement of N nodes that communicate with each other using two contra-flowing buses; the nodes use an extremely simple protocol to send messages on these buses. This simple, but elegant, system has been found to be very challenging to analyze. We consider a simple and uniform abstraction of this model to highlight the fairness issues in terms of average waiting time. We introduce a new approximation method to analyze the performance of DQDB system in terms of the average waiting time of a node expressed as a function of its position. Our approach abstracts the intimate relationship between the load of the system and its fairness characteristics, and explains all basic behavior profiles of DQDB observed in previous simulation. For the uniform DQDB with equal distance between adjacent nodes, we show that the system operates under three basic behavior profiles and a finite number of their combinations that depend on the load of the network. Consequently, the system is not fair at any load in terms of the average waiting times. In the vicinity of a critical load of 1 {minus} 4/N, the uniform network runs into a state akin to chaos, where its behavior fluctuates from one extreme to the other with a load variation of 2/N. Our analysis is supported by simulation results. We also show that the main theme of the analysis carries over to the general (non-uniform) DQDB; by suitably choosing the inter-node distances, the DQDB can be made fair around some loads, but such system will become unfair as the load changes.

  6. Precision Modeling of Solar Energetic Particle Intensity and Anisotropy Profiles

    Science.gov (United States)

    Ruffolo, D.; Sáiz, A.; Bieber, J. W.; Evenson, P.; Pyle, R.; Rujiwarodom, M.; Tooprakai, P.; Wechakama, M.; Khumlumlert, T.

    2006-12-01

    A focused transport equation for solar energetic particles is sufficiently complex that simple analytic approximations are generally inadequate, but the physics is sufficiently well established to permit precise numerical modeling of high energy particle observations at various distances from the Sun. We demonstrate how observed profiles of intensity and anisotropy vs. time can be quantitatively fit to determine an optimal injection profile at the Sun, scattering mean free path λ, and magnetic configuration. For several ground level enhancements (GLE) of solar energetic particles at energies ~ 1 GeV, the start time of injection has been determined to 1 or 2 minutes. In each case this start time coincides, within that precision, to the soft X-ray peak time, when the flare's primary energy release has ended. This is not inconsistent with acceleration at a coronal mass ejection (CME)-driven shock, though the rapid timescale is challenging to understand. For the GLE of 2005 January 20, λ decreases substantially over ~ 10 minutes, which is consistent with concepts of proton-amplified waves. The GLE of 2000 July 14 is properly fit only when a magnetic bottleneck beyond Earth is taken into account, a feature later confirmed by NEAR observations. The long-standing puzzle of the 1989 October 22 event can now be explained by simultaneous injection of relativistic solar particles along both legs of a closed interplanetary magnetic loop, while other reasonable explanations fail the test of quantitative fitting. The unusually long λ (confirming many previous reports) and a low turbulent spectral index hint at unusual properties of turbulence in the loop. While the early GLE peak on 2003 October 28 remains a mystery, the main peak's strong anisotropy is inconsistent with a suggestion of injection along the far leg of a magnetic loop; quantitative fitting fails because of reverse focusing during Sunward motion. With these modeling capabilities, one is poised to take full

  7. Deep-depletion physics-based analytical model for scanning capacitance microscopy carrier profile extraction

    International Nuclear Information System (INIS)

    Wong, K. M.; Chim, W. K.

    2007-01-01

    An approach for fast and accurate carrier profiling using deep-depletion analytical modeling of scanning capacitance microscopy (SCM) measurements is shown for an ultrashallow p-n junction with a junction depth of less than 30 nm and a profile steepness of about 3 nm per decade change in carrier concentration. In addition, the analytical model is also used to extract the SCM dopant profiles of three other p-n junction samples with different junction depths and profile steepnesses. The deep-depletion effect arises from rapid changes in the bias applied between the sample and probe tip during SCM measurements. The extracted carrier profile from the model agrees reasonably well with the more accurate carrier profile from inverse modeling and the dopant profile from secondary ion mass spectroscopy measurements

  8. Personality profile of adult ADHD: the alternative five factor model.

    Science.gov (United States)

    Valero, Sergi; Ramos-Quiroga, Antoni; Gomà-i-Freixanet, Montserrat; Bosch, Rosa; Gómez-Barros, Nuria; Nogueira, Mariana; Palomar, Gloria; Corrales, Montse; Casas, Miquel

    2012-06-30

    Attention-deficit/hyperactivity disorder (ADHD) is one of the most frequently diagnosed disorders in childhood affecting around 3% to 5% of adults worldwide. Most of the studies have been carried out using the Five Factor Model (FFM). Given the value and importance of describing adult ADHD in terms of general personality structure for a better conceptualization of this disorder, this study contributes adding new data on an Alternative Five Factor Model (AFFM) of personality. The aim of the present study is twofold: To assess the personality profile of adults with ADHD under the AFFM perspective, and to test the discriminant validity of the Zuckerman-Kuhlman Personality Questionnaire (ZKPQ) in differentiating ADHD subjects vs. normal range controls. A sample of 217 adults (64% male) meeting ADHD diagnosis (DSM-IV) was paired by age and sex with 434 normal-range controls. Logistic regression analysis showed that high scores on Neuroticism-Anxiety, Impulsivity and General Activity, and low on Work Activity were the most powerful predictors of being endorsed with an ADHD diagnosis. Results may suggest refinements in the personality assessment of ADHD as it seems that the ZKPQ provides more specific subscales for the description and conceptualization of this disorder. Copyright © 2012 Elsevier Ltd. All rights reserved.

  9. Implementation of the frequency dependent line model in a real-time power system simulator

    Directory of Open Access Journals (Sweden)

    Reynaldo Iracheta-Cortez

    2017-09-01

    Full Text Available In this paper is described the implementation of the frequency-dependent line model (FD-Line in a real-time digital power system simulator. The main goal with such development is to describe a general procedure to incorporate new realistic models of power system components in modern real-time simulators based on the Electromagnetic Transients Program (EMTP. In this procedure are described, firstly, the steps to obtain the time domain solution of the differential equations that models the electromagnetic behavior in multi-phase transmission lines with frequency dependent parameters. After, the algorithmic solution of the FD-Line model is implemented in Simulink environment, through an S-function programmed in C language, for running off-line simulations of electromagnetic transients. This implementation allows the free assembling of the FD Line model with any element of the Power System Blockset library and also, it can be used to build any network topology. The main advantage of having a power network built in Simulink is that can be executed in real-time by means of the commercial eMEGAsim simulator. Finally, several simulation cases are presented to validate the accuracy and the real-time performance of the FD-Line model.

  10. Transmission line model for coupled rectangular double split‐ring resonators

    DEFF Research Database (Denmark)

    Yan, Lei; Tang, Meng; Krozer, Viktor

    2011-01-01

    In this work, a model based on a coupled transmission line formulation is developed for microstrip rectangular double split‐ring resonators (DSRRs). This model allows using the physical dimensions of the DSRRs as an input avoiding commonly used extraction of equivalent parameters. The model...... DSRRs, which allows for an accurate modeling of densely packed multiresonator structures. The model is verified by comparison with measured DSRRs‐loaded microstrip line performance. The developed model can be effectively used to save computation resources associated with full wave electromagnetic...

  11. Towards automated firearm identification based on high resolution 3D data: rotation-invariant features for multiple line-profile-measurement of firing pin shapes

    Science.gov (United States)

    Fischer, Robert; Vielhauer, Claus

    2015-03-01

    Understanding and evaluation of potential evidence, as well as evaluation of automated systems for forensic examinations currently play an important role within the domain of digital crime scene analysis. The application of 3D sensing and pattern recognition systems for automatic extraction and comparison of firearm related tool marks is an evolving field of research within this domain. In this context, the design and evaluation of rotation-invariant features for use on topography data play a particular important role. In this work, we propose and evaluate a 3D imaging system along with two novel features based on topography data and multiple profile-measurement-lines for automatic matching of firing pin shapes. Our test set contains 72 cartridges of three manufactures shot by six different 9mm guns. The entire pattern recognition workflow is addressed. This includes the application of confocal microscopy for data acquisition, preprocessing covers outlier handling, data normalization, as well as necessary segmentation and registration. Feature extraction involves the two introduced features for automatic comparison and matching of 3D firing pin shapes. The introduced features are called `Multiple-Circle-Path' (MCP) and `Multiple-Angle-Path' (MAP). Basically both features are compositions of freely configurable amounts of circular or straight path-lines combined with statistical evaluations. During the first part of evaluation (E1), we examine how well it is possible to differentiate between two 9mm weapons of the same mark and model. During second part (E2), we evaluate the discrimination accuracy regarding the set of six different 9mm guns. During the third part (E3), we evaluate the performance of the features in consideration of different rotation angles. In terms of E1, the best correct classification rate is 100% and in terms of E2 the best result is 86%. The preliminary results for E3 indicate robustness of both features regarding rotation. However, in future

  12. SLC beam line error analysis using a model-based expert system

    International Nuclear Information System (INIS)

    Lee, M.; Kleban, S.

    1988-02-01

    Commissioning particle beam line is usually a very time-consuming and labor-intensive task for accelerator physicists. To aid in commissioning, we developed a model-based expert system that identifies error-free regions, as well as localizing beam line errors. This paper will give examples of the use of our system for the SLC commissioning. 8 refs., 5 figs

  13. Data description and quality assessment of ionospheric electron density profiles for ARPA modeling project. Technical report

    International Nuclear Information System (INIS)

    Conkright, R.O.

    1977-03-01

    This report presents a description of the automated method used to produce electron density (N(h)) profiles from ionograms recorded on 35mm film and an assessment of the resulting data base. A large data base of about 30,000 profiles was required for an ionospheric modeling project. This motivated a search for an automated method of producing profiles. The automated method used is fully described, the resulting data are given a quality grade, and the noon and midnight profiles are presented. Selected portions of this data base are compared with profiles produced by the standard profiling method in use by the Environmental Data Service at Boulder, Colorado

  14. CRLH Transmission Lines for Telecommunications: Fast and Effective Modeling

    Directory of Open Access Journals (Sweden)

    Juanjuan Gao

    2017-01-01

    Full Text Available A different parameter extraction approach based on zero immittances for composite right/left-handed (CRLH structure is presented. For lossless unit cell equivalent circuit model, LC parameters of series and parallel branches are extracted according to series resonance frequency and parallel resonance frequency, respectively. This approach can be applied to symmetric and unbalanced CRLH structures. The parameter extraction procedure is provided and validated by T-type unit cell model. The responses of distributed prototype and extracted equivalent LC circuit model are in good agreement. The equivalent circuit modeling can improve the degree of freedom in the CRLH TLs design. This parameter extraction method provides an effective and straightforward way in CRLH metamaterials design and applications in telecommunication systems.

  15. Bursal transcriptome profiling of different inbred chicken lines reveals key differentially expressed genes at 3 days post-infection with very virulent infectious bursal disease virus.

    Science.gov (United States)

    Farhanah, Mohd Isa; Yasmin, Abd Rahaman; Mat Isa, Nurulfiza; Hair-Bejo, Mohd; Ideris, Aini; Powers, Claire; Oladapo, Omobolanle; Nair, Venugopal; Khoo, Jia-Shiun; Ghazali, Ahmad-Kamal; Yee, Wai-Yan; Omar, Abdul Rahman

    2018-01-01

    Infectious bursal disease is a highly contagious disease in the poultry industry and causes immunosuppression in chickens. Genome-wide regulations of immune response genes of inbred chickens with different genetic backgrounds, following very virulent infectious bursal disease virus (vvIBDV) infection are poorly characterized. Therefore, this study aims to analyse the bursal tissue transcriptome of six inbred chicken lines 6, 7, 15, N, O and P following infection with vvIBDV strain UK661 using strand-specific next-generation sequencing, by highlighting important genes and pathways involved in the infected chicken during peak infection at 3 days post-infection. All infected chickens succumbed to the infection without major variations among the different lines. However, based on the viral loads and bursal lesion scoring, lines P and 6 can be considered as the most susceptible lines, while lines 15 and N were regarded as the least affected lines. Transcriptome profiling of the bursa identified 4588 genes to be differentially expressed, with 2985 upregulated and 1642 downregulated genes, in which these genes were commonly or uniquely detected in all or several infected lines. Genes that were upregulated are primarily pro-inflammatory cytokines, chemokines and IFN-related. Various genes that are associated with B-cell functions and genes related to apoptosis were downregulated, together with the genes involved in p53 signalling. In conclusion, bursal transcriptome profiles of different inbred lines showed differential expressions of pro-inflammatory cytokines and chemokines, Th1 cytokines, JAK-STAT signalling genes, MAPK signalling genes, and their related pathways following vvIBDV infection.

  16. Dislocation density and Burgers vector population in fiber-textured Ni thin films determined by high-resolution X-ray line profile analysis

    DEFF Research Database (Denmark)

    Csiszár, Gábor; Pantleon, Karen; Alimadadi, Hossein

    2012-01-01

    distribution are determined by high-resolution X-ray diffraction line profile analysis. The substructure parameters are correlated with the strength of the films by using the combined Taylor and Hall-Petch relations. The convolutional multiple whole profile method is used to obtain the substructure parameters......Nanocrystalline Ni thin films have been produced by direct current electrodeposition with different additives and current density in order to obtain 〈100〉, 〈111〉 and 〈211〉 major fiber textures. The dislocation density, the Burgers vector population and the coherently scattering domain size...

  17. Stratospheric and mesospheric pressure-temperature profiles from rotational analysis of CO2 lines in atmospheric trace molecule spectroscopy/ATLAS 1 infrared solar occultation spectra

    Science.gov (United States)

    Stiller, G. P.; Gunson, M. R.; Lowes, L. L.; Abrams, M. C.; Raper, O. F.; Farmer, C. B.; Zander, R.; Rinsland, C. P.

    1995-01-01

    A simple, classical, and expedient method for the retrieval of atmospheric pressure-temperature profiles has been applied to the high-resolution infrared solar absorption spectra obtained with the atmospheric trace molecule spectroscopy (ATMOS) instrument. The basis for this method is a rotational analysis of retrieved apparent abundances from CO2 rovibrational absorption lines, employing existing constituent concentration retrieval software used in the analysis of data returned by ATMOS. Pressure-temperature profiles derived from spectra acquired during the ATLAS 1 space shuttle mission of March-April 1992 are quantitatively evaluated and compared with climatological and meteorological data as a means of assessing the validity of this approach.

  18. Profile of Human TERT and P73 in Oral Squamous Cell Carcinoma Cell Lines Compared to Normal Human Oral Mucosa: a Preliminary Study

    Directory of Open Access Journals (Sweden)

    Ambar Kusuma Astuti

    2013-05-01

    Full Text Available Genetic alteration on p53 allows cellular immortalization and predisposes cells to neoplastic transformation. This immortalization is related to telomere length maintenance by telomerase. Human TERT is a key compo-nent of telomerase, which activity is suppressed by p53. The p73, the homolog of p53, has a similar ability in tumor suppression. The P73 is expressed at a different level in various cancer cells and normal tissues. Profile of human TERT and P73 in mutant p53 OSCC cell line and normal human oral mucosa have not been known. Objective: To observe human TERT and P73 profile in mutant p53 OSCC cell lines and normal human oral mucosa. Methods: The extracted protein of HSC-3 and HSC-4 cell lines and normal mucosal tissues were ana-lyzed with SDS PAGE to detect human TERT and p73 expression based on the molecular weight. Results: The HSC-3 cell line showed thicker band density of P73 compared to its density of HSC-4. Only 50% of normal oral mucosa tissue showed thick P73 band density. The human TERT band was clearly shown in HSC-3 and HSC-4 cell lines but not in normal oral mucosa. Conclusion: Different profile of human TERT and P73 in OSCC cell lines and normal oral mucosa might be cell-type specific and influenced by the status of p53. Analy-sis of the role of p73 in these cancers might need further research to determine possible p73 substitution for p53 function.DOI: 10.14693/jdi.v18i1.55

  19. Driving the Model to Its Limit: Profile Likelihood Based Model Reduction.

    Science.gov (United States)

    Maiwald, Tim; Hass, Helge; Steiert, Bernhard; Vanlier, Joep; Engesser, Raphael; Raue, Andreas; Kipkeew, Friederike; Bock, Hans H; Kaschek, Daniel; Kreutz, Clemens; Timmer, Jens

    2016-01-01

    In systems biology, one of the major tasks is to tailor model complexity to information content of the data. A useful model should describe the data and produce well-determined parameter estimates and predictions. Too small of a model will not be able to describe the data whereas a model which is too large tends to overfit measurement errors and does not provide precise predictions. Typically, the model is modified and tuned to fit the data, which often results in an oversized model. To restore the balance between model complexity and available measurements, either new data has to be gathered or the model has to be reduced. In this manuscript, we present a data-based method for reducing non-linear models. The profile likelihood is utilised to assess parameter identifiability and designate likely candidates for reduction. Parameter dependencies are analysed along profiles, providing context-dependent suggestions for the type of reduction. We discriminate four distinct scenarios, each associated with a specific model reduction strategy. Iterating the presented procedure eventually results in an identifiable model, which is capable of generating precise and testable predictions. Source code for all toy examples is provided within the freely available, open-source modelling environment Data2Dynamics based on MATLAB available at http://www.data2dynamics.org/, as well as the R packages dMod/cOde available at https://github.com/dkaschek/. Moreover, the concept is generally applicable and can readily be used with any software capable of calculating the profile likelihood.

  20. Driving the Model to Its Limit: Profile Likelihood Based Model Reduction.

    Directory of Open Access Journals (Sweden)

    Tim Maiwald

    Full Text Available In systems biology, one of the major tasks is to tailor model complexity to information content of the data. A useful model should describe the data and produce well-determined parameter estimates and predictions. Too small of a model will not be able to describe the data whereas a model which is too large tends to overfit measurement errors and does not provide precise predictions. Typically, the model is modified and tuned to fit the data, which often results in an oversized model. To restore the balance between model complexity and available measurements, either new data has to be gathered or the model has to be reduced. In this manuscript, we present a data-based method for reducing non-linear models. The profile likelihood is utilised to assess parameter identifiability and designate likely candidates for reduction. Parameter dependencies are analysed along profiles, providing context-dependent suggestions for the type of reduction. We discriminate four distinct scenarios, each associated with a specific model reduction strategy. Iterating the presented procedure eventually results in an identifiable model, which is capable of generating precise and testable predictions. Source code for all toy examples is provided within the freely available, open-source modelling environment Data2Dynamics based on MATLAB available at http://www.data2dynamics.org/, as well as the R packages dMod/cOde available at https://github.com/dkaschek/. Moreover, the concept is generally applicable and can readily be used with any software capable of calculating the profile likelihood.

  1. Profiling of polyunsaturated fatty acids in human serum using off-line and on-line solid phase extraction-nano-liquid chromatography-quadrupole-time-of-flight mass spectrometry.

    Science.gov (United States)

    Gu, Wan-Yi; Liu, Mei-Xian; Sun, Bao-Qing; Guo, Ming-Quan; Wu, Jian-Lin; Li, Na

    2018-02-16

    Polyunsaturated fatty acids (PUFAs) play a pivotal role in the biological effects, and are the potential biomarkers for some diseases. However, the structural diversity and similarity, the low concentration, and the interference of high abundant endogenous components challenge the PUFAs profiling. Herein, a novel analytical approach, off-line and on-line solid phase extraction-nano-liquid chromatography-quadrupole-time-of-flight mass spectrometry (off-line and on-line SPE-nano-LC-Q-TOF-MS), was established to monitor the PUFAs. The combination of off-line and on-line SPE removed most of impurities, and the recoveries ranged from 80.1% to 93.0% and the matrix effects were from 85.1% to 92.8%. Using this method, 51 PUFAs could be separated well and quantified with the limits of quantification between 0.006 and 2.2 pg. Finally, this developed method was applied successfully to simultaneously qualify and quantify the potential biomarkers in the allergic patients. 21 PUFAs including LTB 4, 5S-, 11S-, 15S-HETE and 15S-HEPE showed significant differences. Our study indicated that the established method has the potential to sensitively and accurately determine the PUFAs in biological samples. Copyright © 2018 Elsevier B.V. All rights reserved.

  2. Modeling of Stark–Zeeman Lines in Magnetized Hydrogen Plasmas

    Indian Academy of Sciences (India)

    tions are retained through the use of a Debye electric field model; and the broadening due to the electrons is described with a collision operator (e.g., see Rosato et al. 2009 for details on the code). The Zeeman effect and the fine structure are retained through their corresponding Hamiltonians. The average over the atom's ...

  3. On-line Bayesian model updating for structural health monitoring

    Science.gov (United States)

    Rocchetta, Roberto; Broggi, Matteo; Huchet, Quentin; Patelli, Edoardo

    2018-03-01

    Fatigue induced cracks is a dangerous failure mechanism which affects mechanical components subject to alternating load cycles. System health monitoring should be adopted to identify cracks which can jeopardise the structure. Real-time damage detection may fail in the identification of the cracks due to different sources of uncertainty which have been poorly assessed or even fully neglected. In this paper, a novel efficient and robust procedure is used for the detection of cracks locations and lengths in mechanical components. A Bayesian model updating framework is employed, which allows accounting for relevant sources of uncertainty. The idea underpinning the approach is to identify the most probable crack consistent with the experimental measurements. To tackle the computational cost of the Bayesian approach an emulator is adopted for replacing the computationally costly Finite Element model. To improve the overall robustness of the procedure, different numerical likelihoods, measurement noises and imprecision in the value of model parameters are analysed and their effects quantified. The accuracy of the stochastic updating and the efficiency of the numerical procedure are discussed. An experimental aluminium frame and on a numerical model of a typical car suspension arm are used to demonstrate the applicability of the approach.

  4. Relativistic Disc Line: A Tool to Constrain Neutron Star Equation of State Models

    Science.gov (United States)

    Bhattacharyya, Sudip

    2017-09-01

    Relativistic iron Kα spectral emission line from the inner disc of a neutron star Low-Mass X-ray Binary (LMXB) was first detected in 2007. This discovery opened up new ways to probe strong gravity and dense matter. The past decade has seen detections of such a line from many neutron star LMXBs, and confirmation of this line from the same source with several X-ray satellites. These have firmly established the new field of relativistic disc line from neutron star systems in only a decade or so. Fitting the shape of such a line with an appropriate general relativistic model provides the accretion disc inner edge radius to the stellar mass ratio. In this review, we briefly discuss how an accurate measurement of this ratio with a future larger area X-ray instrument can be used to constrain neutron star equation of state models.

  5. MATHEMATICAL MODEL OF POWER CONSUMPTION FOR SOME OIL PIPE-LINE SECTIONS WITH POOR OPERATIONAL STABILITY

    Directory of Open Access Journals (Sweden)

    J. N. Kolesnik

    2005-01-01

    Full Text Available Mathematical model of power consumption for technologically completed and non-completed oil pipe-line sections with poor operational stability has been developed on the basis of daily indices concerning oil transportation regimes. The model permits to take into account tendencies in power consumption under various time prediction cycles and ranges of oil freight turnover, changes in the bulk and characteristics of the transported oil, configuration and design parameters of oil pipe-line.

  6. OFF-LINE HANDWRITING RECOGNITION USING VARIOUS HYBRID MODELING TECHNIQUES AND CHARACTER N-GRAMS

    NARCIS (Netherlands)

    Brakensiek, A.; Rottland, J.; Kosmala, A.; Rigoll, G.

    2004-01-01

    In this paper a system for on-line cursive handwriting recognition is described. The system is based on Hidden Markov Models (HMMs) using discrete and hybrid modeling techniques. Here, we focus on two aspects of the recognition system. First, we present different hybrid modeling techniques, whereas

  7. Expression profiling of a genetic animal model of depression reveals novel molecular pathways underlying depressive-like behaviours.

    Directory of Open Access Journals (Sweden)

    Ekaterini Blaveri

    2010-09-01

    Full Text Available The Flinders model is a validated genetic rat model of depression that exhibits a number of behavioural, neurochemical and pharmacological features consistent with those observed in human depression.In this study we have used genome-wide microarray expression profiling of the hippocampus and prefrontal/frontal cortex of Flinders Depression Sensitive (FSL and control Flinders Depression Resistant (FRL lines to understand molecular basis for the differences between the two lines. We profiled two independent cohorts of Flinders animals derived from the same colony six months apart, each cohort statistically powered to allow independent as well as combined analysis. Using this approach, we were able to validate using real-time-PCR a core set of gene expression differences that showed statistical significance in each of the temporally distinct cohorts, representing consistently maintained features of the model. Small but statistically significant increases were confirmed for cholinergic (chrm2, chrna7 and serotonergic receptors (Htr1a, Htr2a in FSL rats consistent with known neurochemical changes in the model. Much larger gene changes were validated in a number of novel genes as exemplified by TMEM176A, which showed 35-fold enrichment in the cortex and 30-fold enrichment in hippocampus of FRL animals relative to FSL.These data provide significant insights into the molecular differences underlying the Flinders model, and have potential relevance to broader depression research.

  8. Multidirectional Scanning Model, MUSCLE, to Vectorize Raster Images with Straight Lines

    Science.gov (United States)

    Karas, Ismail Rakip; Bayram, Bulent; Batuk, Fatmagul; Akay, Abdullah Emin; Baz, Ibrahim

    2008-01-01

    This paper presents a new model, MUSCLE (Multidirectional Scanning for Line Extraction), for automatic vectorization of raster images with straight lines. The algorithm of the model implements the line thinning and the simple neighborhood methods to perform vectorization. The model allows users to define specified criteria which are crucial for acquiring the vectorization process. In this model, various raster images can be vectorized such as township plans, maps, architectural drawings, and machine plans. The algorithm of the model was developed by implementing an appropriate computer programming and tested on a basic application. Results, verified by using two well known vectorization programs (WinTopo and Scan2CAD), indicated that the model can successfully vectorize the specified raster data quickly and accurately. PMID:27879843

  9. Evolution of radial profiles in regular Lemaitre-Tolman-Bondi dust models

    International Nuclear Information System (INIS)

    Sussman, Roberto A

    2010-01-01

    We undertake a comprehensive and rigorous analytic study of the evolution of radial profiles of covariant scalars in regular LemaItre-Tolman-Bondi (LTB) dust models. We consider specifically the phenomenon of 'profile inversions' in which an initial clump profile of density, spatial curvature or the expansion scalar might evolve into a void profile (and vice versa). Previous work in the literature on models with density void profiles and/or allowing for density profile inversions is given full generalization, with some erroneous results corrected. We prove rigorously that if an evolution without shell crossings is assumed, then only the 'clump to void' inversion can occur in density profiles, and only in hyperbolic models or regions with negative spatial curvature. The profiles of spatial curvature follow similar patterns as those of the density, with 'clump to void' inversions only possible for hyperbolic models or regions. However, profiles of the expansion scalar are less restrictive, with profile inversions necessarily taking place in elliptic models. We also examine radial profiles in special LTB configurations: closed elliptic models, models with a simultaneous big bang singularity, as well as a locally collapsing elliptic region surrounded by an expanding hyperbolic background. The general analytic statements that we obtain allow for setting up the right initial conditions to construct fully regular LTB models with any specific qualitative requirements for the profiles of all scalars and their time evolution. The results presented can be very useful in guiding future numerical work on these models and in revising previous analytic work on all their applications.

  10. Conventional and molecular cytogenetics of human non-medullary thyroid carcinoma: characterization of eight cell line models and review of the literature on clinical samples

    International Nuclear Information System (INIS)

    Ribeiro, Franclim Ricardo; Meireles, Ana Margarida; Rocha, Ana Sofia; Teixeira, Manuel Rodrigues

    2008-01-01

    Cell lines are often poorly characterized from a genetic point of view, reducing their usefulness as tumor models. Our purpose was to assess the genetic background of eight commonly used human thyroid carcinoma models and to compare the findings with those reported for primary tumors of the gland. We used chromosome banding analysis and comparative genomic hybridization to profile eight non-medullary thyroid carcinoma cell lines of papillary (TPC-1, FB2, K1 and B-CPAP), follicular (XTC-1) or anaplastic origin (8505C, C643 and HTH74). To assess the representativeness of the findings, we additionally performed a thorough review of cytogenetic (n = 125) and DNA copy number information (n = 270) available in the literature on clinical samples of thyroid carcinoma. The detailed characterization of chromosomal markers specific for each cell line revealed two cases of mistaken identities: FB2 was shown to derive from TPC-1 cells, whereas K1 cells have their origin in cell line GLAG-66. All cellular models displayed genomic aberrations of varying complexity, and recurrent gains at 5p, 5q, 8q, and 20q (6/7 cell lines) and losses at 8p, 13q, 18q, and Xp (4/7 cell lines) were seen. Importantly, the genomic profiles were compatible with those of the respective primary tumors, as seen in the meta-analysis of the existing literature data. We provide the genomic background of seven independent thyroid carcinoma models representative of the clinical tumors of the corresponding histotypes, and highlight regions of recurrent aberrations that may guide future studies aimed at identifying target genes. Our findings further support the importance of routinely performing cytogenetic studies on cell lines, to detect cross-contamination mishaps such as those identified here

  11. Design, Modeling and Control of a Biped Line-Walking Robot

    Directory of Open Access Journals (Sweden)

    Ludan Wang

    2010-12-01

    Full Text Available The subject of this paper is the design and analysis of a biped line walking robot for inspection of power transmission lines. With a novel mechanism the centroid of the robot can be concentrated on the axis of hip joint to minimize the drive torque of the hip joint. The mechanical structure of the robot is discussed, as well as forward kinematics. Dynamic model is established in this paper to analyze the inverse kinematics for motion planning. The line-walking cycle of the line-walking robot is composed of a single-support phase and a double-support phase. Locomotion of the line-walking robot is discussed in details and the obstacle-navigation process is planed according to the structure of power transmission line. To fulfill the demands of line-walking, a control system and trajectories generation method are designed for the prototype of the line-walking robot. The feasibility of this concept is then confirmed by performing experiments with a simulated line environment.

  12. Design, Modeling and Control of a Biped Line-Walking Robot

    Directory of Open Access Journals (Sweden)

    Ludan Wang

    2011-01-01

    Full Text Available The subject of this paper is the design and analysis of a biped line walking robot for inspection of power transmission lines. With a novel mechanism the centroid of the robot can be concentrated on the axis of hip joint to minimize the drive torque of the hip joint. The mechanical structure of the robot is discussed, as well as forward kinematics. Dynamic model is established in this paper to analyze the inverse kinematics for motion planning. The line-walking cycle of the line-walking robot is composed of a single-support phase and a double-support phase. Locomotion of the line-walking robot is discussed in details and the obstacle-navigation process is planed according to the structure of power transmission line. To fulfill the demands of line-walking, a control system and trajectories generation method are designed for the prototype of the line-walking robot. The feasibility of this concept is then confirmed by performing experiments with a simulated line environment.

  13. A global off-line model of size-resolved aerosol microphysics: I. Model development and prediction of aerosol properties

    Directory of Open Access Journals (Sweden)

    D. V. Spracklen

    2005-01-01

    Full Text Available A GLObal Model of Aerosol Processes (GLOMAP has been developed as an extension to the TOMCAT 3-D Eulerian off-line chemical transport model. GLOMAP simulates the evolution of the global aerosol size distribution using a sectional two-moment scheme and includes the processes of aerosol nucleation, condensation, growth, coagulation, wet and dry deposition and cloud processing. We describe the results of a global simulation of sulfuric acid and sea spray aerosol. The model captures features of the aerosol size distribution that are well established from observations in the marine boundary layer and free troposphere. Modelled condensation nuclei (CN>3nm vary between about 250–500 cm-3 in remote marine boundary layer regions and are generally in good agreement with observations. Modelled continental CN concentrations are lower than observed, which may be due to lack of some primary aerosol sources or the neglect of nucleation mechanisms other than binary homogeneous nucleation of sulfuric acid-water particles. Remote marine CN concentrations increase to around 2000–10 000 cm (at standard temperature and pressure in the upper troposphere, which agrees with typical observed vertical profiles. Cloud condensation nuclei (CCN at 0.2% supersaturation vary between about 1000 cm-3 in polluted regions and between 10 and 500 cm-3 in the remote marine boundary layer. New particle formation through sulfuric acid-water binary nucleation occurs predominantly in the upper troposphere, but the model results show that these particles contribute greatly to aerosol concentrations in the marine boundary layer. For this sulfur-sea salt system it is estimated that sea spray emissions account for only ~10% of CCN in the tropical marine boundary layer, but between 20 and 75% in the mid-latitude Southern Ocean. In a run with only natural sulfate and sea salt emissions the global mean surface CN concentration is more than 60% of that from a run with 1985 anthropogenic

  14. Semi-empirical model for fluorescence lines evaluation in diagnostic x-ray beams.

    Science.gov (United States)

    Bontempi, Marco; Andreani, Lucia; Labanti, Claudio; Costa, Paulo Roberto; Rossi, Pier Luca; Baldazzi, Giuseppe

    2016-01-01

    Diagnostic x-ray beams are composed of bremsstrahlung and discrete fluorescence lines. The aim of this study is the development of an efficient model for the evaluation of the fluorescence lines. The most important electron ionization models are analyzed and implemented. The model results were compared with experimental data and with other independent spectra presented in the literature. The implemented peak models allow the discrimination between direct and indirect radiation emitted from tungsten anodes. The comparison with the independent literature spectra indicated a good agreement. Copyright © 2015 Elsevier Ltd. All rights reserved.

  15. Astronomy across State Lines: A Collaborative Model for Astronomical Research

    Science.gov (United States)

    Johnson, Chelen H.; Barge, Jacqueline; Linahan, Marcella; York, Donald G.; Cante, David; Cook, Mary; Daw, Maeve; Donahoe, Katherine E.; Ford, Sydney; Haecker, Lille W.; Hibbs, Cecily A.; Hogan, Eleanor B.; Karos, Demetra N.; Kozikowski, Kendall G.; Martin, Taylor A.; Miranda, Fernando; Ng, Emily; Noel, Imany; O'Bryan, Sophie E.; Sharma, Vikrant; Zegeye, David

    2015-01-01

    Scientists do not work in isolation, nor should student scientists. In a collaborative effort, students from three high schools examined plates from the Sloan Digital Sky Survey (SDSS) to estimate the number of galaxies that contain evidence of a black hole. Working under the direction of Don York, former SDSS director, the three teachers used Google hangouts to discuss weekly progress. At their home institutions, students examined optical spectra from SDSS Data Release 10 to determine if a quasar could be discerned. Both Type I and Type II quasars can be seen in the SDSS data. Seven teams of students from different schools compared their findings and collaborated online to discuss potential discoveries. This project can serve as a model for high school teachers who want to facilitate their students participating in an authentic research project. The keys to a successful project are working with a mentor who can guide the group through difficult concepts and communicating frequently throughout the project.

  16. On enhancing on-line collaboration using fuzzy logic modeling

    Directory of Open Access Journals (Sweden)

    Leontios J. Hadjileontiadis

    2004-04-01

    Full Text Available Web-based collaboration calls for professional skills and competences to the benefit of the quality of the collaboration and its output. Within this framework, educational virtual environments may provide a means for training upon these skills and in particular the collaborative ones. On the basis of the existing technological means such training may be enhanced even more. Designing considerations towards this direction include the close follow-up of the collaborative activity and provision of support grounded upon a pedagogical background. To this vein, a fuzzy logic-based expert system, namely Collaboration/Reflection-Fuzzy Inference System (C/R-FIS, is presented in this paper. By means of interconnected FISs, the C/R-FIS expert system automatically evaluates the collaborative activity of two peers, during their asynchronous, written, web-based collaboration. This information is used for the provision of adaptive support to peers during their collaboration, towards equilibrium of their collaborative activity. In particular, this enhanced formative feedback aims at diminishing the possible dissonance between the individual collaborative skills by challenging self-adjustment procedures. The proposed model extents the evaluation system of a web-based collaborative tool namely Lin2k, which has served as a test-bed for the C/R-FIS experimental use. Results from its experimental use have proved the potentiality of the proposed model to significantly contribute to the enhancement of the collaborative activity and its transferability to other collaborative learning contexts, such as medicine, environmental engineering, law, and music education.

  17. Transmission Line Jobs and Economic Development Impact (JEDI) Model User Reference Guide

    Energy Technology Data Exchange (ETDEWEB)

    Goldberg, M.; Keyser, D.

    2013-10-01

    The Jobs and Economic Development Impact (JEDI) models, developed through the National Renewable Energy Laboratory (NREL), are freely available, user-friendly tools that estimate the potential economic impacts of constructing and operating power generation projects for a range of conventional and renewable energy technologies. The Transmission Line JEDI model can be used to field questions about the economic impacts of transmission lines in a given state, region, or local community. This Transmission Line JEDI User Reference Guide was developed to provide basic instruction on operating the model and understanding the results. This guide also provides information on the model's underlying methodology, as well as the parameters and references used to develop the cost data contained in the model.

  18. A Polarized Atmospheric Radiative Transfer Model for Calculations of Spectra of the Stokes Parameters of Shortwave Radiation Based on the Line-by-Line and Monte Carlo Methods

    Directory of Open Access Journals (Sweden)

    Boris Fomin

    2012-10-01

    Full Text Available This paper presents a new version of radiative transfer model called the Fast Line-by-Line Model (FLBLM, which is based on the Line-by-Line (LbL and Monte Carlo (MC methods and rigorously treats particulate and molecular scattering alongside absorption. The advantage of this model consists in the use of the line-by-line model that allows for the computing of high-resolution spectra quite quickly. We have developed the model by taking into account the polarization state of light and carried out some validations by comparison against benchmark results. FLBLM calculates the Stokes parameters spectra of shortwave radiation in vertically inhomogeneous atmospheres. This update makes the model applicable for the assessment of cloud and aerosol influence on radiances as measured by the SW high-resolution polarization spectrometers. In sample results we demonstrate that the high-resolution spectra of the Stokes parameters contain more detailed information about clouds and aerosols than the medium- and low-resolution spectra wherein lines are not resolved. The presented model is rapid enough for many practical applications (e.g., validations and might be useful especially for the remote sensing. FLBLM is suitable for development of the reliable technique for retrieval of optical and microphysical properties of clouds and aerosols from high-resolution satellites data.

  19. Architectures drawn / digital models: the Venices (impossible on line

    Directory of Open Access Journals (Sweden)

    Malvina Borgherini

    2011-12-01

    Full Text Available A contemporary city representation talks not only about architecture and landscape but also about the effects that political institutions, cultural traditions and economic enterprises have on the urban community. Methods and ways traditionally used to present the complexity and, at the same time, the personality of a town, or on a smaller scale of one of his monument, are not suitable with the contemporary reality. A very famous panel presented at Venice Biennale in 1976, Aldo Rossi’s «Città Analoga», within real and ideal architectures, ancient monuments and contemporary landscapes, individual and collective memories, human presences and empty spaces, can be taken as an example for the preparation of a new ‘story’ or a new ‘map’ for a city like Venice. The space of a digital model can become a place for discussion and analysis, a place where to see together historical records and projects never realized, where to put subjective and objective visions, which overlap daily and occasional tracks.

  20. COMPLEX VARIABILITY OF THE Hα EMISSION LINE PROFILE OF THE T TAURI BINARY SYSTEM KH 15D: THE INFLUENCE OF ORBITAL PHASE, OCCULTATION BY THE CIRCUMBINARY DISK, AND ACCRETION PHENOMENA

    International Nuclear Information System (INIS)

    Hamilton, Catrina M.; Johns-Krull, Christopher M.; Mundt, Reinhard; Herbst, William; Winn, Joshua N.

    2012-01-01

    We have obtained 48 high-resolution echelle spectra of the pre-main-sequence eclipsing binary system KH 15D (V582 Mon, P = 48.37 days, e ∼ 0.6, M A = 0.6 M ☉ , M B = 0.7 M ☉ ). The eclipses are caused by a circumbinary disk (CBD) seen nearly edge on, which at the epoch of these observations completely obscured the orbit of star B and a large portion of the orbit of star A. The spectra were obtained over five contiguous observing seasons from 2001/2002 to 2005/2006 while star A was fully visible, fully occulted, and during several ingress and egress events. The Hα line profile shows dramatic changes in these time series data over timescales ranging from days to years. A fraction of the variations are due to 'edge effects' and depend only on the height of star A above or below the razor sharp edge of the occulting disk. Other observed variations depend on the orbital phase: the Hα emission line profile changes from an inverse P-Cygni-type profile during ingress to an enhanced double-peaked profile, with both a blue and a red emission component, during egress. Each of these interpreted variations are complicated by the fact that there is also a chaotic, irregular component present in these profiles. We find that the complex data set can be largely understood in the context of accretion onto the stars from a CBD with gas flows as predicted by the models of eccentric T Tauri binaries put forward by Artymowicz and Lubow, Günther and Kley, and de Val-Borro et al. In particular, our data provide strong support for the pulsed accretion phenomenon, in which enhanced accretion occurs during and after perihelion passage.

  1. Model for hydrogen isotope backscattering, trapping and depth profiles in C and a-Si

    International Nuclear Information System (INIS)

    Cohen, S.A.; McCracken, G.M.

    1979-03-01

    A model of low energy hydrogen trapping and backscattering in carbon and a-silicon is described. Depth profiles are calculated and numerical results presented for various incident angular and energy distributions. The calculations yield a relation between depth profiles and the incident ion energy distribution. The use of this model for tokamak plasma diagnosis is discussed

  2. Modeling and experimental investigation of lightning arcs and overvoltages for medium voltage distribution lines

    Energy Technology Data Exchange (ETDEWEB)

    Omidiora, M. A.

    2011-07-01

    In this dissertation, lightning overvoltages in Medium Voltage (MV) lines are thoroughly investigated. The other goal is to propose new protection schemes for the designs. The lines consist of overhead lines, underground cables and covered conductors. These overvoltage problems range from direct and indirect strokes to lightning arcs. All the models and simulations are developed using the Electromagnetic Transient Program (EMTP) and Finite Element Method (FEM), while MATLAB is used for post-processing the results and identification of the model parameters. Improvement in the surge protection of MV overhead lines is demonstrated with a combination of surge arresters and a shield wire. Using the IEEE 34-node feeder injected with multiple lightning strokes, the feeder is simulated using EMTP. The response of the line is modeled both with and without the surge protection devices. The simulation study extends to the performance of a MV underground cable due to a nearby lightning discharge using FEM. The use of shield wire for limiting the overvoltage stress in the cables is proposed. A numerical analysis and simulations are performed to determine the outage rate of MV covered conductors due to lightning strokes of different characteristics. The optimum distance for surge protective devices on the conductors is also assessed. An enhancement in the surge analysis of distribution lines with the shielding effect of trees is proposed. An experimental study shows that a tree can intercept a lightning stroke in the vicinity of a distribution line. This study also analyzes experimental results of the shielding effectiveness of a tree and the induced voltages existing between the tree and the distribution line. The study is extended to evaluate the induced voltage on a distribution line for larger clearances using a Rusck model. This work investigates the lightning arc between an overhead line and a nearby tree under artificial rainfall. A full-scale laboratory experiment

  3. Developing a predictive risk model for first-line antiretroviral therapy failure in South Africa.

    Science.gov (United States)

    Rohr, Julia K; Ive, Prudence; Horsburgh, C Robert; Berhanu, Rebecca; Shearer, Kate; Maskew, Mhairi; Long, Lawrence; Sanne, Ian; Bassett, Jean; Ebrahim, Osman; Fox, Matthew P

    A substantial number of patients with HIV in South Africa have failed first-line antiretroviral therapy (ART). Although individual predictors of first-line ART failure have been identified, few studies in resource-limited settings have been large enough for predictive modelling. Understanding the absolute risk of first-line failure is useful for patient monitoring and for effectively targeting limited resources for second-line ART. We developed a predictive model to identify patients at the greatest risk of virologic failure on first-line ART, and to estimate the proportion of patients needing second-line ART over five years on treatment. A cohort of patients aged ≥18 years from nine South African HIV clinics on first-line ART for at least six months were included. Viral load measurements and baseline predictors were obtained from medical records. We used stepwise selection of predictors in accelerated failure-time models to predict virologic failure on first-line ART (two consecutive viral load levels >1000 copies/mL). Multiple imputations were used to assign missing baseline variables. The final model was selected using internal-external cross-validation maximizing model calibration at five years on ART, and model discrimination, measured using Harrell's C-statistic. Model covariates were used to create a predictive score for risk group of ART failure. A total of 72,181 patients were included in the analysis, with an average of 21.5 months (IQR: 8.8-41.5) of follow-up time on first-line ART. The final predictive model had a Weibull distribution and the final predictors of virologic failure were men of all ages, young women, nevirapine use in first-line regimen, low baseline CD4 count, high mean corpuscular volume, low haemoglobin, history of TB and missed visits during the first six months on ART. About 24.4% of patients in the highest quintile and 9.4% of patients in the lowest quintile of risk were predicted to experience treatment failure over five years on

  4. Global methylation profiling of lymphoblastoid cell lines reveals epigenetic contributions to autism spectrum disorders and a novel autism candidate gene, RORA, whose protein product is reduced in autistic brain

    Science.gov (United States)

    Nguyen, AnhThu; Rauch, Tibor A.; Pfeifer, Gerd P.; Hu, Valerie W.

    2010-01-01

    Autism is currently considered a multigene disorder with epigenetic influences. To investigate the contribution of DNA methylation to autism spectrum disorders, we have recently completed large-scale methylation profiling by CpG island microarray analysis of lymphoblastoid cell lines derived from monozygotic twins discordant for diagnosis of autism and their nonautistic siblings. Methylation profiling revealed many candidate genes differentially methylated between discordant MZ twins as well as between both twins and nonautistic siblings. Bioinformatics analysis of the differentially methylated genes demonstrated enrichment for high-level functions including gene transcription, nervous system development, cell death/survival, and other biological processes implicated in autism. The methylation status of 2 of these candidate genes, BCL-2 and retinoic acid-related orphan receptor alpha (RORA), was further confirmed by bisulfite sequencing and methylation-specific PCR, respectively. Immunohistochemical analyses of tissue arrays containing slices of the cerebellum and frontal cortex of autistic and age- and sex-matched control subjects revealed decreased expression of RORA and BCL-2 proteins in the autistic brain. Our data thus confirm the role of epigenetic regulation of gene expression via differential DNA methylation in idiopathic autism, and furthermore link molecular changes in a peripheral cell model with brain pathobiology in autism.—Nguyen, A., Rauch, T. A., Pfeifer, G. P., Hu, V. W. Global methylation profiling of lymphoblastoid cell lines reveals epigenetic contributions to autism spectrum disorders and a novel autism candidate gene, RORA, whose protein product is reduced in autistic brain. PMID:20375269

  5. Modeling Auditory-Haptic Interface Cues from an Analog Multi-line Telephone

    Science.gov (United States)

    Begault, Durand R.; Anderson, Mark R.; Bittner, Rachael M.

    2012-01-01

    The Western Electric Company produced a multi-line telephone during the 1940s-1970s using a six-button interface design that provided robust tactile, haptic and auditory cues regarding the "state" of the communication system. This multi-line telephone was used as a model for a trade study comparison of two interfaces: a touchscreen interface (iPad)) versus a pressure-sensitive strain gauge button interface (Phidget USB interface controllers). The experiment and its results are detailed in the authors' AES 133rd convention paper " Multimodal Information Management: Evaluation of Auditory and Haptic Cues for NextGen Communication Dispays". This Engineering Brief describes how the interface logic, visual indications, and auditory cues of the original telephone were synthesized using MAX/MSP, including the logic for line selection, line hold, and priority line activation.

  6. Survival curves of neoplastic and non transformed human cell lines: statistical analysis using different models

    International Nuclear Information System (INIS)

    Fertil, B.; Deschavanne, P.; Malaise, E.P.; Lachet, B.

    1978-01-01

    The 'in vitro' radiosensitivity to γ rays of 6 human cell lines is studied by the colony method: 3 cell lines are derived from colorectal carcinomas, one from a squamous cell carcinoma, one from a Melanoma and the last one is a non-transformed fibroblast cell line. We have attempted to get the lowest percentage of surviving cells as possible. We have used four statistical models to fit the different survival curves: the multitarget single hit, the multitarget two hits, the 'Wideroe', and the quadratic models. The main conclusions drawn from these analyses are the following: -the discrimination between the models could be done by the shape of the curve and the accuracy of the experimental results, but also by the determination of the cell survival after high doses. The quadratic model fits in best with the suvival curves of the 6 cell lines. It allows an accurate description of the shoulder of the survival curves and thus provides information for the comprehension of results in the radiotherapy of human cancers. The quadratic dependence of the surviving fraction on the dose is precisely determined; -significative differences in radiosensitivity show up among the cell lines. The biological interpretation of this finding is discussed: -concerning the fibroblast cell line, it appears that: as opposed to most results published till now, the interpretation of their survival curves must be based upon a quadratic radiation action. Despite their radiosensitivity higher than most other mammalian cells in vitro, fibroblast cells seem to have a comparable survival curve

  7. An Experimental Study of Surge Characteristics of a Distribution Line Using a Reduced-Scale Model

    Science.gov (United States)

    Matsuura, Susumu; Noda, Taku; Asakawa, Akira; Yokoyama, Shigeru

    Lightning-related overvoltages on 6.6-kV overhead distribution lines can roughly be classified into the two types: overvoltages induced by a nearby lightning stroke and overvoltages due to a direct lightning stroke to the distribution line. Protection measures against the former, which is commonly called lightning-induced overvoltages, have been taken and can be considered as completed. Regarding the latter, recent experimental studies have revealed that protection against a direct lightning hit is possible by applying appropriate countermeasures. Studies of such countermeasures are now carried out by digital simulations using the EMTP (Electro-Magnetic Transients Program), and thus components of a distribution line must be modeled appropriately in the EMTP for accurate simulations. This paper presents surge characteristics of a distribution line obtained by experiments using a reduced-scale distribution line model. The reduced-scale model includes a reinforced concrete pole, a ground wire, phase wires, a grounding lead conductor installed along the pole, and a lightning channel. Unlike preceding studies, the surge impedance of a reinforced concrete pole is measured considering the effects of a ground wire and phase wires. Voltages at various positions of the distribution line model have been measured with varying the wavefront time of the injected current simulating a lightning stroke and also varying the grounding resistance of the pole, and their effects are examined.

  8. Physics of the Jagla model as the liquid-liquid coexistence line slope varies.

    Science.gov (United States)

    Luo, Jiayuan; Xu, Limei; Angell, C Austen; Stanley, H Eugene; Buldyrev, Sergey V

    2015-06-14

    The slope of the coexistence line of the liquid-liquid phase transition can be positive, negative, or zero. All three possibilities have been found in Monte-Carlo simulations of a modified spherically symmetric two-scale Jagla model. Since the liquid-liquid critical point frequently lies in a region of the phase diagram that is difficult to access experimentally, it is of great interest to study critical phenomena in the supercritical region. We therefore study the properties of the Widom line, defined in the one-phase region above the critical point as an extension of the coexistence line near which the loci of various response functions extrema asymptotically converge with each other. This phenomenon is predicted by the scaling theory according to which all response functions can be expressed asymptotically in the vicinity of a critical point as functions of the diverging correlation length. We find that the method of identifying the Widom line as the loci of heat capacity maxima becomes unfruitful when the slope of the coexistence line approaches zero in the T-P plane. In this case, the specific heat displays no maximum in the one-phase region because, for a horizontal phase coexistence line, according to the Clapeyron equation, the enthalpy difference between the coexisting phases is zero, and thus the critical fluctuations do not contribute to enthalpy fluctuations. The extension of the coexistence line beyond the critical point into the one-phase region must in this case be performed using density fluctuations. Although the line of compressibility maxima bifurcates into a symmetrical pair of lines, it remains well-defined. We also study how the glass transition changes as the slope of the coexistence line in the T-P plane approaches zero. We find that for the case of positive slopes, diffusivity shows a fragile-to-strong transition upon crossing the Widom line, while for horizontal slope, diffusivity shows the behavior typical for fragile liquids.

  9. Characterization of an alpine tree line using airborne LiDAR data and physiological modeling.

    Science.gov (United States)

    Coops, Nicholas C; Morsdorf, Felix; Schaepman, Michael E; Zimmermann, Niklaus E

    2013-12-01

    Understanding what environmental drivers control the position of the alpine tree line is important for refining our understanding of plant stress and tree development, as well as for climate change studies. However, monitoring the location of the tree line position and potential movement is difficult due to cost and technical challenges, as well as a lack of a clear boundary. Advanced remote sensing technologies such as Light Detection and Ranging (LiDAR) offer significant potential to map short individual tree crowns within the transition zone despite the lack of predictive capacity. Process-based forest growth models offer a complementary approach by quantifying the environmental stresses trees experience at the tree line, allowing transition zones to be defined and ultimately mapped. In this study, we investigate the role remote sensing and physiological, ecosystem-based modeling can play in the delineation of the alpine tree line. To do so, we utilize airborne LiDAR data to map tree height and stand density across a series of altitudinal gradients from below to above the tree line within the Swiss National Park (SNP), Switzerland. We then utilize a simple process-based model to assess the importance of seasonal variations on four climatically related variables that impose non-linear constraints on photosynthesis. Our results indicate that all methods predict the tree line to within a 50 m altitudinal zone and indicate that aspect is not a driver of significant variations in tree line position in the region. Tree cover, rather than tree height is the main discriminator of the tree line at higher elevations. Temperatures in fall and spring are responsible for the major differences along altitudinal zones, however, changes in evaporative demand also control plant growth at lower altitudes. Our results indicate that the two methods provide complementary information on tree line location and, when combined, provide additional insights into potentially endangered

  10. Radial Profile of the 3.5 kev Line Out to R200 in the Perseus Cluster

    Science.gov (United States)

    Franse, Jeroen; Bulbul, Esra; Foster, Adam; Boyarsky, Alexey; Markevitch, Maxim; Bautz, Mark; Lakubovskyi, Dmytro; Loewenstein, Michael; McDonald, Michael; Miller, Eric; hide

    2016-01-01

    The recent discovery of the unidentified emission line at 3.5 keV in galaxies and clusters has attracted great interest from the community. As the origin of the line remains uncertain, we study the surface brightness distribution of the line in the Perseus cluster since that information can be used to identify its origin. We examine the flux distribution of the 3.5 keV line in the deep Suzaku observations of the Perseus cluster in detail. The 3.5 keV line is observed in three concentric annuli in the central observations, although the observations of the outskirts of the cluster did not reveal such a signal. We establish that these detections and the upper limits from the non-detections are consistent with a dark matter decay origin. However, absence of positive detection in the outskirts is also consistent with some unknown astrophysical origin of the line in the dense gas of the Perseus core, as well as with a dark matter origin with a steeper dependence on mass than the dark matter decay. We also comment on several recently published analyses of the 3.5 keV line.

  11. Modeling and calibration of a 4-line-camera system for precise coordinate measurement

    Science.gov (United States)

    Zhou, Kai; Wang, Xiangjun

    2017-10-01

    The research in this paper is intended for a precise position measurement system based on 4 line-cameras. Each camera is equipped with a cylindrical lens that can stretch an image point into a line which is perpendicular to the linear CCD, thus providing one dimension of projected coordinate of the corresponding 3D point. This system has a symmetrical structure with four line-cameras being divided into two identical groups. In each group, the two linecameras are fixed together with orientations normal to each other. Those two line-cameras form a 2D image sensor that can determine a light of sight on which the target point lies, just like an area array CCD camera does. With two groups of line-cameras, the position of 3D points can be detected. In this paper, a model of the 4-line-camera system for computing the coordinates of 3D target points in object frame is proposed, which is linear and computationally efficient. In addition, a calibration approach is presented in which the exterior orientations of the four line-cameras are obtained. Experiment results have shown that the system can achieve high accuracy in coordinate measurement of light spots from 0.5m to 3.5m, which demonstrate the performance of our proposed modeling and calibration methods.

  12. Genome Wide Expression Profiling of Cancer Cell Lines Cultured in Microgravity Reveals Significant Dysregulation of Cell Cycle and MicroRNA Gene Networks.

    Directory of Open Access Journals (Sweden)

    Prasanna Vidyasekar

    Full Text Available Zero gravity causes several changes in metabolic and functional aspects of the human body and experiments in space flight have demonstrated alterations in cancer growth and progression. This study reports the genome wide expression profiling of a colorectal cancer cell line-DLD-1, and a lymphoblast leukemic cell line-MOLT-4, under simulated microgravity in an effort to understand central processes and cellular functions that are dysregulated among both cell lines. Altered cell morphology, reduced cell viability and an aberrant cell cycle profile in comparison to their static controls were observed in both cell lines under microgravity. The process of cell cycle in DLD-1 cells was markedly affected with reduced viability, reduced colony forming ability, an apoptotic population and dysregulation of cell cycle genes, oncogenes, and cancer progression and prognostic markers. DNA microarray analysis revealed 1801 (upregulated and 2542 (downregulated genes (>2 fold in DLD-1 cultures under microgravity while MOLT-4 cultures differentially expressed 349 (upregulated and 444 (downregulated genes (>2 fold under microgravity. The loss in cell proliferative capacity was corroborated with the downregulation of the cell cycle process as demonstrated by functional clustering of DNA microarray data using gene ontology terms. The genome wide expression profile also showed significant dysregulation of post transcriptional gene silencing machinery and multiple microRNA host genes that are potential tumor suppressors and proto-oncogenes including MIR22HG, MIR17HG and MIR21HG. The MIR22HG, a tumor-suppressor gene was one of the highest upregulated genes in the microarray data showing a 4.4 log fold upregulation under microgravity. Real time PCR validated the dysregulation in the host gene by demonstrating a 4.18 log fold upregulation of the miR-22 microRNA. Microarray data also showed dysregulation of direct targets of miR-22, SP1, CDK6 and CCNA2.

  13. Genomic prediction based on data from three layer lines using non-linear regression models

    NARCIS (Netherlands)

    Huang, H.; Windig, J.J.; Vereijken, A.; Calus, M.P.L.

    2014-01-01

    Background - Most studies on genomic prediction with reference populations that include multiple lines or breeds have used linear models. Data heterogeneity due to using multiple populations may conflict with model assumptions used in linear regression methods. Methods - In an attempt to alleviate

  14. QUANTIFYING THE CONTRIBUTION OF LANGUAGE MODELING TO WRITER­INDEPENDENT ON­LINE HANDWRITING RECOGNITION

    NARCIS (Netherlands)

    Pitrelli, J.F.; Ratzlaf, E.H.

    2004-01-01

    We describe experiments varying the degree of language­model constraint applied to writer­independent on­line handwriting recognition. Six types of models are used, varying statistical components and hard constraints which govern recognition search during the sequencing of characters to form valid

  15. The phase transition lines in pair approximation for the basic reinfection model SIRI

    International Nuclear Information System (INIS)

    Stollenwerk, Nico; Martins, Jose; Pinto, Alberto

    2007-01-01

    For a spatial stochastic epidemic model we investigate in the pair approximation scheme the differential equations for the moments. The basic reinfection model of susceptible-infected-recovered-reinfected or SIRI type is analysed, its phase transition lines calculated analytically in this pair approximation

  16. Modelling of Temperature Profiles and Transport Scaling in Auxiliary Heated Tokamaks

    DEFF Research Database (Denmark)

    Callen, J.D.; Christiansen, J.P.; Cordey, J.G.

    1987-01-01

    in detail: (i) a heat pinch or excess temperature gradient model with constant coefficients; and (ii) a non-linear heat diffusion coefficient (χ) model. Both models predict weak (lesssim20%) temperature profile responses to physically relevant changes in the heat deposition profile – primarily because...... that result from the models clarify why temperature profiles in many tokamaks are often characterized as exhibiting a high degree of 'profile consistency'. Global transport scaling laws are also derived from the two models. The non-linear model with χ ∝ dT/dr produces a non-linear energy confinement time (L......-mode) scaling with input power, . The constant heat pinch or excess temperature gradient model leads to the offset linear law for the total stored energy W with Pin, W = τinc Pin + W(0), which describes JET auxiliary heating data quite well. It also provides definitions for the incremental energy confinement...

  17. Model for Assembly Line Re-Balancing Considering Additional Capacity and Outsourcing to Face Demand Fluctuations

    Science.gov (United States)

    Samadhi, TMAA; Sumihartati, Atin

    2016-02-01

    The most critical stage in a garment industry is sewing process, because generally, it consists of a number of operations and a large number of sewing machines for each operation. Therefore, it requires a balancing method that can assign task to work station with balance workloads. Many studies on assembly line balancing assume a new assembly line, but in reality, due to demand fluctuation and demand increased a re-balancing is needed. To cope with those fluctuating demand changes, additional capacity can be carried out by investing in spare sewing machine and paying for sewing service through outsourcing. This study develops an assembly line balancing (ALB) model on existing line to cope with fluctuating demand change. Capacity redesign is decided if the fluctuation demand exceeds the available capacity through a combination of making investment on new machines and outsourcing while considering for minimizing the cost of idle capacity in the future. The objective of the model is to minimize the total cost of the line assembly that consists of operating costs, machine cost, adding capacity cost, losses cost due to idle capacity and outsourcing costs. The model develop is based on an integer programming model. The model is tested for a set of data of one year demand with the existing number of sewing machines of 41 units. The result shows that additional maximum capacity up to 76 units of machine required when there is an increase of 60% of the average demand, at the equal cost parameters..

  18. Differential protein expression profile in the hypothalamic GT1-7 cell line after exposure to anabolic androgenic steroids.

    Science.gov (United States)

    Martínez-Rivera, Freddyson J; Pérez-Laspiur, Juliana; Santiago-Gascot, María E; Alemán-Reyes, Abner G; García-Santiago, Emanuel; Rodríguez-Pérez, Yolanda; Calo-Guadalupe, Cristhian; Otero-Pagán, Inelia; Ayala-Pagán, Roxsana N; Martínez, Magdiel; Cantres-Rosario, Yisel M; Meléndez, Loyda M; Barreto-Estrada, Jennifer L

    2017-01-01

    The abuse of anabolic androgenic steroids (AAS) has been considered a major public health problem during decades. Supraphysiological doses of AAS may lead to a variety of neuroendocrine problems. Precisely, the hypothalamic-pituitary-gonadal (HPG) axis is one of the body systems that is mainly influenced by steroidal hormones. Fluctuations of the hormonal milieu result in alterations of reproductive function, which are made through changes in hypothalamic neurons expressing gonadotropin-releasing hormone (GnRH). In fact, previous studies have shown that AAS modulate the activity of these neurons through steroid-sensitive afferents. To increase knowledge about the cellular mechanisms induced by AAS in GnRH neurons, we performed proteomic analyses of the murine hypothalamic GT1-7 cell line after exposure to 17α-methyltestosterone (17α-meT; 1 μM). These cells represent a good model for studying regulatory processes because they exhibit the typical characteristics of GnRH neurons, and respond to compounds that modulate GnRH in vivo. Two-dimensional difference in gel electrophoresis (2D-DIGE) and mass spectrometry analyses identified a total of 17 different proteins that were significantly affected by supraphysiological levels of AAS. Furthermore, pathway analyses showed that modulated proteins were mainly associated to glucose metabolism, drug detoxification, stress response and cell cycle. Validation of many of these proteins, such as GSTM1, ERH, GAPDH, PEBP1 and PDIA6, were confirmed by western blotting. We further demonstrated that AAS exposure decreased expression of estrogen receptors and GnRH, while two important signaling pathway proteins p-ERK, and p-p38, were modulated. Our results suggest that steroids have the capacity to directly affect the neuroendocrine system by modulating key cellular processes for the control of reproductive function.

  19. Differential protein expression profile in the hypothalamic GT1-7 cell line after exposure to anabolic androgenic steroids.

    Directory of Open Access Journals (Sweden)

    Freddyson J Martínez-Rivera

    Full Text Available The abuse of anabolic androgenic steroids (AAS has been considered a major public health problem during decades. Supraphysiological doses of AAS may lead to a variety of neuroendocrine problems. Precisely, the hypothalamic-pituitary-gonadal (HPG axis is one of the body systems that is mainly influenced by steroidal hormones. Fluctuations of the hormonal milieu result in alterations of reproductive function, which are made through changes in hypothalamic neurons expressing gonadotropin-releasing hormone (GnRH. In fact, previous studies have shown that AAS modulate the activity of these neurons through steroid-sensitive afferents. To increase knowledge about the cellular mechanisms induced by AAS in GnRH neurons, we performed proteomic analyses of the murine hypothalamic GT1-7 cell line after exposure to 17α-methyltestosterone (17α-meT; 1 μM. These cells represent a good model for studying regulatory processes because they exhibit the typical characteristics of GnRH neurons, and respond to compounds that modulate GnRH in vivo. Two-dimensional difference in gel electrophoresis (2D-DIGE and mass spectrometry analyses identified a total of 17 different proteins that were significantly affected by supraphysiological levels of AAS. Furthermore, pathway analyses showed that modulated proteins were mainly associated to glucose metabolism, drug detoxification, stress response and cell cycle. Validation of many of these proteins, such as GSTM1, ERH, GAPDH, PEBP1 and PDIA6, were confirmed by western blotting. We further demonstrated that AAS exposure decreased expression of estrogen receptors and GnRH, while two important signaling pathway proteins p-ERK, and p-p38, were modulated. Our results suggest that steroids have the capacity to directly affect the neuroendocrine system by modulating key cellular processes for the control of reproductive function.

  20. Expression Profiling of Glucosinolate Biosynthetic Genes in Brassica oleracea L. var. capitata Inbred Lines Reveals Their Association with Glucosinolate Content

    Directory of Open Access Journals (Sweden)

    Arif Hasan Khan Robin

    2016-06-01

    Full Text Available Glucosinolates are the biochemical compounds that provide defense to plants against pathogens and herbivores. In this study, the relative expression level of 48 glucosinolate biosynthesis genes was explored in four morphologically-different cabbage inbred lines by qPCR analysis. The content of aliphatic and indolic glucosinolate molecules present in those cabbage lines was also estimated by HPLC analysis. The possible association between glucosinolate accumulation and related gene expression level was explored by principal component analysis (PCA. The genotype-dependent variation in the relative expression level of different aliphatic and indolic glucosinolate biosynthesis genes is the novel result of this study. A total of eight different types of glucosinolates, including five aliphatic and three indolic glucosinolates, was detected in four cabbage lines. Three inbred lines BN3383, BN4059 and BN4072 had no glucoraphanin, sinigrin and gluconapin detected, but the inbred line BN3273 had these three aliphatic glucosinolate compounds. PCA revealed that a higher expression level of ST5b genes and lower expression of GSL-OH was associated with the accumulation of these three aliphatic glucosinolate compounds. PCA further revealed that comparatively higher accumulation of neoglucobrassicin in the inbred line, BN4072, was associated with a high level of expression of MYB34 (Bol017062 and CYP81F1 genes. The Dof1 and IQD1 genes probably trans-activated the genes related to biosynthesis of glucoerucin and methoxyglucobrassicin for their comparatively higher accumulation in the BN4059 and BN4072 lines compared to the other two lines, BN3273 and BN3383. A comparatively higher progoitrin level in BN3273 was probably associated with the higher expression level of the GSL-OH gene. The cabbage inbred line BN3383 accounted for the significantly higher relative expression level for the 12 genes out of 48, but this line had comparatively lower total

  1. Delineation of high water line and seasonal beach profiling at Kalbadevi Bay, Maharashtra, central west coast of India

    Digital Repository Service at National Institute of Oceanography (India)

    Ganesan, P.

    shown on the aerial photography or on remote sensing maps, are highly dynamic and hence less reliable indicators of shoreline position (Robert A. Morton et al., 1999). The present report analyses the results of high tide line changes and beach... : Proceedings for Marine GeoSciences in India. 3. Ganeshan, P. 2003. Delineation of high tide line using Laser Trak and DGPS Instruments: With special reference to mapping techniques. NIO / TR / 5 / 2003. 4. Robert A. Morton and F. Michael...

  2. A Mathematical Model for Non-monotonic Deposition Profiles in Deep Bed Filtration Systems

    DEFF Research Database (Denmark)

    Yuan, Hao; Shapiro, Alexander

    2011-01-01

    . The numerical modeling results highly agree with the experimental observations, which proves the ability of the model to catch a non-monotonic deposition profile in practice. An additional equation describing a mobile population behaving differently from the injected population seems to be a sufficient...... by advection and diffusion/dispersion. The proposed model is able to produce a nonmonotonic deposition profile. A set of methods for estimating the modeling parameters is provided in the case of minimal particle release. The estimation can be easily performed with available experimental information...... condition for producing non-monotonic deposition profiles. The described physics by the additional equation may be different in different experimental settings....

  3. Profile-Likelihood Approach for Estimating Generalized Linear Mixed Models with Factor Structures

    Science.gov (United States)

    Jeon, Minjeong; Rabe-Hesketh, Sophia

    2012-01-01

    In this article, the authors suggest a profile-likelihood approach for estimating complex models by maximum likelihood (ML) using standard software and minimal programming. The method works whenever setting some of the parameters of the model to known constants turns the model into a standard model. An important class of models that can be…

  4. The design, hysteresis modeling and control of a novel SMA-fishing-line actuator

    Science.gov (United States)

    Xiang, Chaoqun; Yang, Hui; Sun, Zhiyong; Xue, Bangcan; Hao, Lina; Asadur Rahoman, M. D.; Davis, Steve

    2017-03-01

    Fishing line can be combined with shape memory alloy (SMA) to form novel artificial muscle actuators which have low cost, are lightweight and soft. They can be applied in bionic, wearable and rehabilitation robots, and can reduce system weight and cost, increase power-to-weight ratio and offer safer physical human-robot interaction. However, these actuators possess several disadvantages, for example fishing line based actuators possess low strength and are complex to drive, and SMA possesses a low percentage contraction and has high hysteresis. This paper presents a novel artificial actuator (known as an SMA-fishing-line) made of fishing line and SMA twisted then coiled together, which can be driven directly by an electrical voltage. Its output force can reach 2.65 N at 7.4 V drive voltage, and the percentage contraction at 4 V driven voltage with a 3 N load is 7.53%. An antagonistic bionic joint driven by the novel SMA-fishing-line actuators is presented, and based on an extended unparallel Prandtl-Ishlinskii (EUPI) model, its hysteresis behavior is established, and the error ratio of the EUPI model is determined to be 6.3%. A Joule heat model of the SMA-fishing-line is also presented, and the maximum error of the established model is 0.510 mm. Based on this accurate hysteresis model, a composite PID controller consisting of PID and an integral inverse (I-I) compensator is proposed and its performance is compared with a traditional PID controller through simulations and experimentation. These results show that the composite PID controller possesses higher control precision than basic PID, and is feasible for implementation in an SMA-fishing-line driven antagonistic bionic joint.

  5. An empirical line-by-line model for the infrared solar transmittance spectrum from 700 to 5000cm{sup -1}

    Energy Technology Data Exchange (ETDEWEB)

    Hase, F. [Institut fuer Meteorologie und Klimaforschung, Forschungszentrum Karlsruhe, Postfach 3640, D-76021 Karlsruhe (Germany)]. E-mail: frank.hase@imk.fzk.de; Demoulin, P. [Institut d' Astrophysique et de Geophysique, allee du VI aout, 17, batiment B5a, B-4000, Liege (Belgium); Sauval, A.J. [Observatoire Royal de Belgique, avenue circulaire, 3, B-1180, Bruxelles (Belgium); Toon, G.C. [Jet Propulsion Laboratory, 4800 Oak Grove Drive, Pasadena, CA 91109 (United States); Bernath, P.F. [Department of Chemistry, University of Waterloo, Waterloo, Ont., Canada N2L3G1 (Canada); Goldman, A. [Department of Physics, University of Denver, Denver, CO 80208 (United States); Hannigan, J.W. [Atmospheric Chemistry Division, National Center for Atmospheric Research, P.O. Box 3000, Boulder, CO 80303 (United States); Rinsland, C.P. [NASA Langley Research Center, Hampton, VA 23681-2199 (United States)

    2006-12-15

    An empirical line-by-line model for the infrared solar transmittance spectrum is presented. The model can be incorporated into radiative transfer codes to allow fast calculation of all relevant emission and absorption features in the solar spectrum in the mid-infrared region from 700 to 5000cm{sup -1}. The transmittance is modelled as a function of the diameter of the field-of-view centered on the solar disk: the line broadening due to solar rotation as well as center-to-limb variations in strength and width are taken into account for stronger lines. Applications of the model presented here are in the fields of terrestrial remote sensing in the mid-infrared spectral region when the sun is used as radiation source or scattered solar radiation contributes to the measured signal and in the fields of atmospheric radiative transfer algorithms which compute the propagation of infrared solar radiation in the terrestrial atmosphere.

  6. Parameters Investigation of Mathematical Model of Productivity for Automated Line with Availability by DMAIC Methodology

    Directory of Open Access Journals (Sweden)

    Tan Chan Sin

    2014-01-01

    Full Text Available Automated line is widely applied in industry especially for mass production with less variety product. Productivity is one of the important criteria in automated line as well as industry which directly present the outputs and profits. Forecast of productivity in industry accurately in order to achieve the customer demand and the forecast result is calculated by using mathematical model. Mathematical model of productivity with availability for automated line has been introduced to express the productivity in terms of single level of reliability for stations and mechanisms. Since this mathematical model of productivity with availability cannot achieve close enough productivity compared to actual one due to lack of parameters consideration, the enhancement of mathematical model is required to consider and add the loss parameters that is not considered in current model. This paper presents the investigation parameters of productivity losses investigated by using DMAIC (Define, Measure, Analyze, Improve, and Control concept and PACE Prioritization Matrix (Priority, Action, Consider, and Eliminate. The investigated parameters are important for further improvement of mathematical model of productivity with availability to develop robust mathematical model of productivity in automated line.

  7. USING THE 3D MODEL IN THE MANUFACTURING AND CONTROL PROCESS OF THE CYCLOID PROFILE WHEELS

    OpenAIRE

    DĂSCĂLESCU Anamaria

    2006-01-01

    In the vibroacoustic performances of the cycloid gear reducer, major influences have the technological parameters: the shape errors of the wells’ tooth and the roughness of the active cycloid profile. The classic manufacturing process of the cycloid profile involves important technological problems. Therefore, in this paper we propose a computational method of manufacturing the cycloid real profile of the cycloid wheels, also a control process, based on the theoretical 3D model ob...

  8. Inclusion of the frequency effect in the lumped parameters transmission line model: State space formulation

    Energy Technology Data Exchange (ETDEWEB)

    Kurokawa, Sergio; Yamanaka, Fabio N.R.; Prado, Afonso J. [Faculdade de Engenharia de Ilha Solteira, Avenida Brasil Centro 56, Caixa Postal 31, Ilha Solteira, SP, CEP 15385-000 (Brazil); Pissolato, Jose [Universidade Estadual de Campinas, Caixa Postal 6101, CEP 13081-970, Campinas, SP (Brazil)

    2009-07-15

    The objective of this paper is to include the frequency dependence of the longitudinal parameters in the lumped parameters line model. The distributed nature of the transmission line was approximated by a cascade of {pi} circuits and the frequency effect was approximated by a rational function which was synthesized by an equivalent circuit. Then, the equivalent circuit was inserted in each {pi} circuit of the cascade. After that, the currents and voltages along the line were described in the form of state equations. This way, it was possible to obtain a formation rule of the state matrices lumped parameters model taking into account the frequency dependence. To confirm the validation of the state matrices obtained, the lumped parameters representation of frequency-dependent lines was used to represent a single-phase line and a three-phase line. The simulations were carried out using state space techniques and an electromagnetic transient program (EMTP) (in this case, the cascade was inserted in the EMTP). It is observed that the simulation results obtained with state space representation are in agreement with those results obtained with EMTP. (author)

  9. Sensitivity of molecular marker-based CMB models to biomass burning source profiles

    Science.gov (United States)

    Sheesley, Rebecca J.; Schauer, James J.; Zheng, Mei; Wang, Bo

    To assess the contribution of sources to fine particulate organic carbon (OC) at four sites in North Carolina, USA, a molecular marker chemical mass balance model (MM-CMB) was used to quantify seasonal contributions for 2 years. The biomass burning contribution at these sites was found to be 30-50% of the annual OC concentration. In order to provide a better understanding of the uncertainty in MM-CMB model results, a biomass burning profile sensitivity test was performed on the 18 seasonal composites. The results using reconstructed emission profiles based on published profiles compared well, while model results using a single source test profile resulted in biomass burning contributions that were more variable. The biomass burning contribution calculated using an average regional profile of fireplace emissions from five southeastern tree species also compared well with an average profile of open burning of pine-dominated forest from Georgia. The standard deviation of the results using different source profiles was a little over 30% of the annual average biomass contributions. Because the biomass burning contribution accounted for 30-50% of the OC at these sites, the choice of profile also impacted the motor vehicle source attribution due to the common emission of elemental carbon and polycyclic aromatic hydrocarbons. The total mobile organic carbon contribution was less effected by the biomass burning profile than the relative contributions from gasoline and diesel engines.

  10. Modeling of Students' Profile and Learning Chronicle with Data Cubes

    Science.gov (United States)

    Ola, Ade G.; Bai, Xue; Omojokun, Emmanuel E.

    2014-01-01

    Over the years, companies have relied on On-Line Analytical Processing (OLAP) to answer complex questions relating to issues in business environments such as identifying profitability, trends, correlations, and patterns. This paper addresses the application of OLAP in education and learning. The objective of the research presented in the paper is…

  11. Cryogenic-temperature profiling of high-power superconducting lines using local and distributed optical-fiber sensors

    CERN Document Server

    Chiuchiolo, Antonella; Consales, Marco; Giordano, Michele; Borriello, Anna; Bajas, Hugues; Galtarossa, Andrea; Bajko, Marta; Cusano, Andrea

    2015-01-01

    This contribution presents distributed and multi-point fiber-optic monitoring of cryogenic temperatures along a superconducting power transmission line down to 30 K and over 20 m distance. Multi-point measurements were conducted using fiber Bragg gratings sensors coated with two different functional overlays (epoxy and PMMA) demonstrating cryogenic operation in the range 300 – 4.2 K. Distributed measurements exploited optical frequency-domain reflectometry to analyze the Rayleigh scattering along two concatenated fibers with different coatings (acrylate and polyimide). The integrated system has been placed along the 20 m long cryostat of a superconducting power transmission line, which is currently being tested at the European Organization for Nuclear Research (CERN). Cool-down events from 300 K to 30 K have been successfully measured in space and time, confirming the viability of these approaches to the monitoring of cryogenic temperatures along a superconducting transmission line.

  12. Transcriptome profiling of differentially expressed genes in floral buds and flowers of male sterile and fertile lines in watermelon.

    Science.gov (United States)

    Rhee, Sun-Ju; Seo, Minseok; Jang, Yoon-Jeong; Cho, Seoae; Lee, Gung Pyo

    2015-11-09

    Male sterility is an important mechanism for the production of hybrid seeds in watermelon. Although fruit development has been studied extensively in watermelon, there are no reports on gene expression in floral organs. In this study, RNA-sequencing (RNA-seq) was performed in two near-isogenic watermelon lines (genic male sterile [GMS] line, DAH3615-MS and male fertile line, DAH3615) to identify the differentially expressed genes (DEGs) related to male sterility. DEG analysis showed that 1259 genes were significantly associated with male sterility at a FDR P-value of watermelon. This analysis revealed essential genes responsible for stamen development, including pollen development and pollen tube elongation, and allowed their functional classification. These results provided new information on global mechanisms related to male sterility in watermelon.

  13. Comparison of Echo 7 field line length measurements to magnetospheric model predictions

    International Nuclear Information System (INIS)

    Nemzek, R.J.; Winckler, J.R.; Malcolm, P.R.

    1992-01-01

    The Echo 7 sounding rocket experiment injected electron beams on central tail field lines near L = 6.5. Numerous injections returned to the payload as conjugate echoes after mirroring in the southern hemisphere. The authors compare field line lengths calculated from measured conjugate echo bounce times and energies to predictions made by integrating electron trajectories through various magnetospheric models: the Olson-Pfitzer Quiet and Dynamic models and the Tsyganenko-Usmanov model. Although Kp at launch was 3-, quiet time magnetic models est fit the echo measurements. Geosynchronous satellite magnetometer measurements near the Echo 7 field lies during the flight were best modeled by the Olson-Pfitzer Dynamic Model and the Tsyganenko-Usmanov model for Kp = 3. The discrepancy between the models that best fit the Echo 7 data and those that fit the satellite data was most likely due to uncertainties in the small-scale configuration of the magnetospheric models. The field line length measured by the conjugate echoes showed some temporal variation in the magnetic field, also indicated by the satellite magnetometers. This demonstrates the utility an Echo-style experiment could have in substorm studies

  14. Description of exposure profiles for seven environmental chemicals in a US population using recursive partition mixture modeling (RPMM).

    Science.gov (United States)

    Przybyla, Jennifer; Kile, Molly; Smit, Ellen

    2017-12-21

    Biomonitoring studies have shown that humans are exposed to numerous environmental chemicals. Previous work provides limited insights into the dynamic relationship between different chemicals within a population. The objective of this study is to develop an analytical method identifying exposure profiles of seven common environmental chemicals and determine how exposure profiles differ by sociodemographic groups and National Health and Nutrition Examination Survey (NHANES) 2003-2012 cycle year. We used recursive partition mixture modeling (RPMM) to define classes of the population with similar exposure profiles of lead, cadmium, 2,4-dichlorophenol, 2,5-dichlorophenol, bisphenol A (BPA), triclosan, and benzophenone-3 in individuals aged ≥6 years. Additionally, quasibinomial logistic regression was used to examine the association between each class and selected demographic characteristics. Eight exposure profiles were identified. Individuals who clustered together and had the highest chemical exposures were more likely to be older, to be Non-Hispanic Black (NHB) or Other Hispanic (OH), more likely to live below the poverty line, more likely to be male, and more likely to have participated in the earlier NHANES cycle (2003-2004). The developed method described the dynamic relationship between chemicals and shows that this relationship is different for subpopulations based on their sociodemographic characteristics.

  15. Dependence of ECH deposition profile on the modeling of incident wave energy

    International Nuclear Information System (INIS)

    Kritz, A.H.; Hsuan, H.; Matsuda, K.

    1986-06-01

    The ray tracing code, TORAY, is used to investigate the importance of modeling assumptions utilized in describing Electron Cyclotron Heating (ECH). In particular, we examine the dependence of the ECH deposition profile on the antenna pattern. We demonstrate that different assumptions for representing the incident wave energy by a finite number of rays lead to significantly different results for the energy deposition profile

  16. Market segment derivation and profiling via a finite mixture model framework

    NARCIS (Netherlands)

    Wedel, M; Desarbo, WS

    The Marketing literature has shown how difficult it is to profile market segments derived with finite mixture models. especially using traditional descriptor variables (e.g., demographics). Such profiling is critical for the proper implementation of segmentation strategy. we propose a new finite

  17. A UML Profile Oriented to the Requirements Modeling in Intelligent Tutoring Systems Projects

    OpenAIRE

    Guedes , Gilleanes Thorwald Araujo; Vicari , Rosa Maria

    2010-01-01

    International audience; This paper describes a proposal for the creation of a UML profile oriented to the intelligent tutoring systems project. In this paper we shall describe the proposed profile as well as its application into the modeling of the AMEA intelligent tutoring system.

  18. Charnock's Roughness Length Model and Non-dimensional Wind Profiles Over the Sea

    DEFF Research Database (Denmark)

    Pena Diaz, Alfredo; Gryning, Sven-Erik

    2008-01-01

    An analysis tool for the study of wind speed profiles over the water has been developed. The profiles are analysed using a modified dimensionless wind speed and dimensionless height, assuming that the sea surface roughness can be predicted by Charnock's roughness length model. In this form, the r...

  19. Infrared heterodyne spectroscopy of astronomical and laboratory sources at 8.5 micron. [absorption line profiles of nitrogen oxide and black body emission from Moon and Mars

    Science.gov (United States)

    Mumma, M.; Kostiuk, T.; Cohen, S.; Buhl, D.; Vonthuna, P. C.

    1974-01-01

    The first infrared heterodyne spectrometer using tuneable semiconductor (PbSe) diode lasers has been constructed and was used near 8.5 micron to measure absorption line profiles of N2O in the laboratory and black body emission from the Moon and from Mars. Spectral information was recorded over a 200 MHz bandwidth using an 8-channel filter bank. The resolution was 25 MHz and the minimum detectable (black body) power was 1 x 10 to the minus 16th power watts for 8 minutes of integration. The results demonstrate the usefulness of heterodyne spectroscopy for the study of remote and local sources in the infrared.

  20. Compositional Model Checking of Interlocking Systems for Lines with Multiple Stations

    DEFF Research Database (Denmark)

    Macedo, Hugo Daniel dos Santos; Fantechi, Alessandro; Haxthausen, Anne Elisabeth

    2017-01-01

    In the railway domain safety is guaranteed by an interlocking system which translates operational decisions into commands leading to field operations. Such a system is safety critical and demands thorough formal verification during its development process. Within this context, our work has focused...... on the extension of a compositional model checking approach to formally verify interlocking system models for lines with multiple stations. The idea of the approach is to decompose a model of the interlocking system by applying cuts at the network modelling level. The paper introduces an alternative cut (the...... linear cut) to a previously proposed cut (border cut). Powered with the linear cut, the model checking approach is then applied to the verification of an interlocking system controlling a real-world multiple station line....

  1. Towards a framework for deriving platform-independent model-driven software product lines

    Directory of Open Access Journals (Sweden)

    Andrés Paz

    2013-05-01

    Full Text Available Model-driven software product lines (MD-SPLs are created from domain models which are transformed, merged and composed with reusable core assets, until software products are produced. Model transformation chains (MTCs must be specified to generate such MD-SPLs. This paper presents a framework for creating platform-independent MD-SPLs; such framework includes a domain specific language (DSL for platform-independent MTC specification and facilities platform-specific MTC generation of several of the most used model transformation frameworks. The DSL also allows product line architects to compose generation taking the need for model transformation strategy and technology interoperability into account and specifying several types of variability involved in such generation.

  2. Bifactor Approach to Modeling Multidimensionality of Physical Self-Perception Profile

    Science.gov (United States)

    Chung, ChihMing; Liao, Xiaolan; Song, Hairong; Lee, Taehun

    2016-01-01

    The multi-dimensionality of Physical Self-Perception Profile (PSPP) has been acknowledged by the use of correlated-factor model and second-order model. In this study, the authors critically endorse the bifactor model, as a substitute to address the multi-dimensionality of PSPP. To cross-validate the models, analyses are conducted first in…

  3. PhenoLines: Phenotype Comparison Visualizations for Disease Subtyping via Topic Models.

    Science.gov (United States)

    Glueck, Michael; Naeini, Mahdi Pakdaman; Doshi-Velez, Finale; Chevalier, Fanny; Khan, Azam; Wigdor, Daniel; Brudno, Michael

    2018-01-01

    PhenoLines is a visual analysis tool for the interpretation of disease subtypes, derived from the application of topic models to clinical data. Topic models enable one to mine cross-sectional patient comorbidity data (e.g., electronic health records) and construct disease subtypes-each with its own temporally evolving prevalence and co-occurrence of phenotypes-without requiring aligned longitudinal phenotype data for all patients. However, the dimensionality of topic models makes interpretation challenging, and de facto analyses provide little intuition regarding phenotype relevance or phenotype interrelationships. PhenoLines enables one to compare phenotype prevalence within and across disease subtype topics, thus supporting subtype characterization, a task that involves identifying a proposed subtype's dominant phenotypes, ages of effect, and clinical validity. We contribute a data transformation workflow that employs the Human Phenotype Ontology to hierarchically organize phenotypes and aggregate the evolving probabilities produced by topic models. We introduce a novel measure of phenotype relevance that can be used to simplify the resulting topology. The design of PhenoLines was motivated by formative interviews with machine learning and clinical experts. We describe the collaborative design process, distill high-level tasks, and report on initial evaluations with machine learning experts and a medical domain expert. These results suggest that PhenoLines demonstrates promising approaches to support the characterization and optimization of topic models.

  4. Profile construction in experimental choice designs for mixed logit models

    NARCIS (Netherlands)

    Sandor, Z; Wedel, M

    2002-01-01

    A computationally attractive model for the analysis of conjoint choice experiments is the mixed multinomial logit model, a multinomial logit model in which it is assumed that the coefficients follow a (normal) distribution across subjects. This model offers the advantage over the standard

  5. PDEPTH—A computer program for the geophysical interpretation of magnetic and gravity profiles through Fourier filtering, source-depth analysis, and forward modeling

    Science.gov (United States)

    Phillips, Jeffrey D.

    2018-01-10

    PDEPTH is an interactive, graphical computer program used to construct interpreted geological source models for observed potential-field geophysical profile data. The current version of PDEPTH has been adapted to the Windows platform from an earlier DOS-based version. The input total-field magnetic anomaly and vertical gravity anomaly profiles can be filtered to produce derivative products such as reduced-to-pole magnetic profiles, pseudogravity profiles, pseudomagnetic profiles, and upward-or-downward-continued profiles. A variety of source-location methods can be applied to the original and filtered profiles to estimate (and display on a cross section) the locations and physical properties of contacts, sheet edges, horizontal line sources, point sources, and interface surfaces. Two-and-a-half-dimensional source bodies having polygonal cross sections can be constructed using a mouse and keyboard. These bodies can then be adjusted until the calculated gravity and magnetic fields of the source bodies are close to the observed profiles. Auxiliary information such as the topographic surface, bathymetric surface, seismic basement, and geologic contact locations can be displayed on the cross section using optional input files. Test data files, used to demonstrate the source location methods in the report, and several utility programs are included.

  6. On the front line of primary health care: the profile of community health workers in rural Quechua communities in Peru

    Directory of Open Access Journals (Sweden)

    Zumaran Adriana

    2006-05-01

    Full Text Available Abstract Objective To describe the profile of community health workers – health promoters, traditional birth attendants and traditional healers – in rural Quechua communities from Ayacucho, Peru. Methods Basic quantitative and qualitative information was gathered as part of a community health project implemented between 1997 and 2002 in 40 Andean communities with information from questionnaires, personal interviews and group discussions. Results The majority of current community health workers are men with limited education who are primarily Quechua speakers undertaking their work on a voluntary basis. Health promoters are mostly young, male, high school graduates. There exists a high drop-out rate among these workers. In contrast, traditional healers and traditional birth attendants possess an almost diametrically opposite profile in terms of age, education and drop-out rates, though males still predominate. At the community level the health promoters are the most visible community health workers. Conclusion It is very important to consider and to be aware of the profile of community health workers in order to provide appropriate alternatives when working with these groups as well as with the indigenous population, particularly in terms of culture, language and gender issues.

  7. The Fluka Linebuilder and Element Database: Tools for Building Complex Models of Accelerators Beam Lines

    CERN Document Server

    Mereghetti, A; Cerutti, F; Versaci, R; Vlachoudis, V

    2012-01-01

    Extended FLUKA models of accelerator beam lines can be extremely complex: heavy to manipulate, poorly versatile and prone to mismatched positioning. We developed a framework capable of creating the FLUKA model of an arbitrary portion of a given accelerator, starting from the optics configuration and a few other information provided by the user. The framework includes a builder (LineBuilder), an element database and a series of configuration and analysis scripts. The LineBuilder is a Python program aimed at dynamically assembling complex FLUKA models of accelerator beam lines: positions, magnetic fields and scorings are automatically set up, and geometry details such as apertures of collimators, tilting and misalignment of elements, beam pipes and tunnel geometries can be entered at user’s will. The element database (FEDB) is a collection of detailed FLUKA geometry models of machine elements. This framework has been widely used for recent LHC and SPS beam-machine interaction studies at CERN, and led to a dra...

  8. Evaluation of Transmission Line Model Structures for Silicide-to-Silicon Specific Contact Resistance Extraction

    NARCIS (Netherlands)

    Stavitski, N.; van Dal, Mark J.H.; Lauwers, Anne; Vrancken, Christa; Kovalgin, Alexeij Y.; Wolters, Robertus A.M.

    2008-01-01

    In order to measure silicide-to-silicon specific contact resistance �?c, transmission line model (TLM) structures were proposed as attractive candidates for embedding in CMOS processes. We optimized TLM structures for nickel silicide and platinum silicide and evaluated them for various doping levels

  9. Wind turbine large-eddy simulations on very coarse grid resolutions using an actuator line model

    NARCIS (Netherlands)

    Martínez-Tossas, Luis A.; Stevens, Richard J.A.M.; Meneveau, Charles

    2016-01-01

    In this work the accuracy of the Actuator Line Model (ALM) in Large Eddy Simulations of wind turbine flow is studied under the specific conditions of very coarse spatial resolutions. For finely-resolved conditions, it is known that ALM provides better accuracy compared to the standard Actuator Disk

  10. Wind Farm Large-Eddy Simulations on Very Coarse Grid Resolutions using an Actuator Line Model

    NARCIS (Netherlands)

    Martinez, L.A.; Meneveau, C.; Stevens, Richard Johannes Antonius Maria

    2016-01-01

    In this work the accuracy of the Actuator Line Model (ALM) in Large Eddy Simula- tions of wind turbine flow is studied under the speci c conditions of very coarse spatial resolutions. For finely-resolved conditions, it is known that ALM provides better accuracy compared to the standard Actuator Disk

  11. A Closed-Form Error Model of Straight Lines for Improved Data Association and Sensor Fusing

    Directory of Open Access Journals (Sweden)

    Volker Sommer

    2018-04-01

    Full Text Available Linear regression is a basic tool in mobile robotics, since it enables accurate estimation of straight lines from range-bearing scans or in digital images, which is a prerequisite for reliable data association and sensor fusing in the context of feature-based SLAM. This paper discusses, extends and compares existing algorithms for line fitting applicable also in the case of strong covariances between the coordinates at each single data point, which must not be neglected if range-bearing sensors are used. Besides, in particular, the determination of the covariance matrix is considered, which is required for stochastic modeling. The main contribution is a new error model of straight lines in closed form for calculating quickly and reliably the covariance matrix dependent on just a few comprehensible and easily-obtainable parameters. The model can be applied widely in any case when a line is fitted from a number of distinct points also without a priori knowledge of the specific measurement noise. By means of extensive simulations, the performance and robustness of the new model in comparison to existing approaches is shown.

  12. Comparisons of Crosswind Velocity Profile Estimates Used in Fast-Time Wake Vortex Prediction Models

    Science.gov (United States)

    Pruis, Mathew J.; Delisi, Donald P.; Ahmad, Nashat N.

    2011-01-01

    Five methods for estimating crosswind profiles used in fast-time wake vortex prediction models are compared in this study. Previous investigations have shown that temporal and spatial variations in the crosswind vertical profile have a large impact on the transport and time evolution of the trailing vortex pair. The most important crosswind parameters are the magnitude of the crosswind and the gradient in the crosswind shear. It is known that pulsed and continuous wave lidar measurements can provide good estimates of the wind profile in the vicinity of airports. In this study comparisons are made between estimates of the crosswind profiles from a priori information on the trajectory of the vortex pair as well as crosswind profiles derived from different sensors and a regional numerical weather prediction model.

  13. Modeled Radar Attenuation Rate Profile at the Vostok 5G Ice Core Site, Antarctica, Version 1

    Data.gov (United States)

    National Aeronautics and Space Administration — This data set provides a modeled radar attenuation rate profile, showing the predicted contributions from pure ice and impurities to radar attenuation at the Vostok...

  14. An Energy Budget Model to Calculate the Low Atmosphere Profiles of Effective Sound Speed at Night

    National Research Council Canada - National Science Library

    Tunick, Arnold

    2003-01-01

    ...) for generating low atmosphere profiles of effective sound speed at night. The alternate model is based on the solution of a quartic equation for surface temperature, which assumes a balance between the net long wave...

  15. Establishing an in vivo model of canine prostate carcinoma using the new cell line CT1258

    International Nuclear Information System (INIS)

    Fork, Melani AM; Bullerdiek, Jörn; Nolte, Ingo; Escobar, Hugo Murua; Soller, Jan T; Sterenczak, Katharina A; Willenbrock, Saskia; Winkler, Susanne; Dorsch, Martina; Reimann-Berg, Nicola; Hedrich, Hans J

    2008-01-01

    Prostate cancer is a frequent finding in man. In dogs, malignant disease of the prostate is also of clinical relevance, although it is a less common diagnosis. Even though there are numerous differences in origin and development of the disease, man and dog share many similarities in the pathological presentation. For this reason, the dog might be a useful animal model for prostate malignancies in man. Although prostate cancer is of great importance in veterinary medicine as well as in comparative medicine, there are only few cell lines available. Thus, it was the aim of the present study to determine whether the formerly established prostate carcinoma cell line CT1258 is a suitable tool for in vivo testing, and to distinguish the growth pattern of the induced tumours. For characterisation of the in vivo behaviour of the in vitro established canine prostate carcinoma cell line CT1258, cells were inoculated in 19 NOD.CB17-Prkdc Scid /J (in the following: NOD-Scid) mice, either subcutaneously or intraperitoneally. After sacrifice, the obtained specimens were examined histologically and compared to the pattern of the original tumour in the donor. Cytogenetic investigation was performed. The cell line CT 1258 not only showed to be highly tumourigenic after subcutaneous as well as intraperitoneal inoculation, but also mimicked the behaviour of the original tumour. Tumours induced by inoculation of the cell line CT1258 resemble the situation in naturally occurring prostate carcinoma in the dog, and thus could be used as in vivo model for future studies

  16. Statistical analysis of probabilistic models of software product lines with quantitative constraints

    DEFF Research Database (Denmark)

    Beek, M.H. ter; Legay, A.; Lluch Lafuente, Alberto

    2015-01-01

    We investigate the suitability of statistical model checking for the analysis of probabilistic models of software product lines with complex quantitative constraints and advanced feature installation options. Such models are specified in the feature-oriented language QFLan, a rich process algebra...... whose operational behaviour interacts with a store of constraints, neatly separating product configuration from product behaviour. The resulting probabilistic configurations and behaviour converge seamlessly in a semantics based on DTMCs, thus enabling quantitative analyses ranging from the likelihood...... of certain behaviour to the expected average cost of products. This is supported by a Maude implementation of QFLan, integrated with the SMT solver Z3 and the distributed statistical model checker MultiVeStA. Our approach is illustrated with a bikes product line case study....

  17. Modelling and measurements of bunch profiles at the LHC

    Energy Technology Data Exchange (ETDEWEB)

    Papadopoulou, S. [Crete U.; Antoniou, F. [Liverpool U.; Argyropoulos, T. [CERN; Fitterer, M. [Fermilab; Hostettler, M. [CERN; Papaphilippou, Y. [CERN

    2017-07-20

    The bunch profiles in the LHC are often observed to be non-Gaussian, both at Flat Bottom (FB) and Flat Top (FT) energies. Especially at FT, an evolution of the tail population in time is observed. In this respect, the Monte-Carlo Software for IBS and Radiation effects (SIRE) is used to track different types of beam distributions. The impact of the distribution shape on the evolution of bunch characteristics is studied. The results are compared with observations from the LHC Run 2 data.

  18. Geometric Model for Tracker-Target Look Angles and Line of Slight Distance

    Science.gov (United States)

    2015-10-20

    15 – 23 OCT 15 4. TITLE AND SUBTITLE Geometric Model for Tracker-Target Look Angles and Line of Slight Distance 5a. CONTRACT ...calculations employ the trigonometric formulae, without taking account of the earth’s elliptical eccentricity – our relatively small distance w.r.t. R...between target and tracker permit this. The spherical model frame is shown in figure 4. The error due to ignoring eccentricity is insignificant for

  19. Sustainable Entrepreneurship (SE): A Revised Model Based on Triple Bottom Line (TBL)

    OpenAIRE

    Izaidin Abdul Majid; Wei-Loon Koe

    2012-01-01

    Throughout the years, researchers have suggested several fields of entrepreneurship studies, such as regular entrepreneurship, green entrepreneurship, social entrepreneurship and sustainable entrepreneurship. This literature review focused on sustainable entrepreneurship, in which a definition was proposed. Then, based upon the concept of triple bottom line, a revised model of sustainable entrepreneurship was suggested at the end of paper. The model consisted of four domains, namely economica...

  20. Sensitivity of Temperature Profiles Retrieved from Mars Global Surveyor Thermal Emission Spectrometer (MGS/TES) Observations to the GSFC Synthetic Mars Model Atmosphere

    Science.gov (United States)

    Maguire, William C.; Pearl, J. C.; Smith, M. D.; Thompson, R. F.; Conrath, B. J.; Dason, S.; Kaelberer, M. S.; Christensen, P. R.

    1999-01-01

    Part of the task of interpreting IR spectral features observed by MGS/TES due to surface minerals requires distinguishing those IR signatures from atmospheric signatures of gas and dust. Surface-atmosphere separation for MGS/TES depends on knowledge of the retrieved temperature profile. In turn, the temperature retrieval Erom the observed data depends on molecular parameters including 15 micron CO2 line shape or line intensities which contribute to defining the Mars synthetic radiative transfer model. Using a simple isothermal, homogeneous single layer model of Pinnock and Shine, we find the ratio of (the error in degrees Kelvin of the retrieved temperature profile) to (the percentage error in the absorption coefficient) (deg K/percent) to be 0.4 at 200K. This ratio at 150K and 250K is 0.2 and 0.6, respectively. A more refined model, incorporating observed MGS/TES retrieved temperature profiles, the TES instrumental resolution and the most recent molecular modelling, will yield an improved knowledge of this error sensitivity. We present results of such a sensitivity study to determine the dependence of temperature profiles inverted from MGS/TES on these and other molecular parameters. This work was supported in part by NASA's Mars Data Analysis Program.

  1. [Biological characteristics of an established model of ovarian cancer in mice and its homologous cell lines].

    Science.gov (United States)

    Zhang, Zheng-Mao; Zhang, Chao; Zhang, Feng-Hua; Shan, Bao-En; Nakagawa, Shinsaku

    2006-06-01

    There are no specific methods for early diagnosis of ovarian cancer, recurrence prevention and drug-resistance. The experimental mouse model of ovarian cancer could help to reveal the biological and genetic features of ovarian cancer, and provide rational basis for further intervention strategy. This study was to establish a model of ovarian cancer in mice and homologous cell line, and analyze its biological characteristics. Ovarian cancer was developed in 8-week-old female F1 (C57BL/6N x C3H/He) mice by a single whole-body neutron irradiation of 2.7 Gy from a (252)Cf source. A metastatic cell line was established through serial subcutaneous transplantation of the primary tumor for 11 generations, and then tumor cells were transferred to in vitro cultivation. These cells were cloned for more than 6 months. The biological characteristics of the tumors and the homologous cell line were determined by cellular and molecular biological techniques. The grafted tumors in mice were successively passaged for 11 generations with a successful inoculation rate of 96% during 23 months. A tumor cell line OV99 isolated from the grafted tumors was established after 6 months and grew steadily. Morphologic characters and ultrastructures of OV99 cells were accorded with those of ovarian cancer epithelia. The chromosomal analysis of OV99 cells revealed aneuploid pattern of 76 chromosomes. Flow cytometry (FCM) and reverse transcription-polymerase chain reaction (RT-PCR) showed same features between OV99 cells and positive control ovarian cancer cell line OVHM, including distribution of cell cycle, rapid growth rate and the expression of P21, P185, P53, proliferating nuclear cell antigen (PCNA) and Cyclin D proteins, and MAGE-1 and MAGE-3 mRNA. Establishment of the ovarian carcinoma animal model in mice and OV99, a cell line owns biologic characteristics of ovarian cancer cells, provides experimental materials for further investigation of ovarian carcinoma.

  2. New chondrosarcoma cell lines and mouse models to study the link between chondrogenesis and chemoresistance.

    Science.gov (United States)

    Monderer, David; Luseau, Alexandrine; Bellec, Amélie; David, Emmanuelle; Ponsolle, Stéphanie; Saiagh, Soraya; Bercegeay, Sylvain; Piloquet, Philippe; Denis, Marc G; Lodé, Laurence; Rédini, Françoise; Biger, Marine; Heymann, Dominique; Heymann, Marie-Françoise; Le Bot, Ronan; Gouin, François; Blanchard, Frédéric

    2013-10-01

    Chondrosarcomas are cartilage-forming, poorly vascularized tumors. They represent the second malignant primary bone tumor of adults after osteosarcoma, but in contrast to osteosarcoma they are resistant to chemotherapy and radiotherapy, surgical excision remaining the only therapeutic option. Few cell lines and animal models are available, and the mechanisms behind their chemoresistance remain largely unknown. Our goal was to establish new cell lines and animal cancer models from human chondrosarcoma biopsies to study their chemoresistance. Between 2007 and 2012, 10 chondrosarcoma biopsies were collected and used for cell culture and transplantation into nude mice. Only one transplanted biopsy and one injected cell line has engrafted successfully leading to conventional central high-grade chondrosarcoma similar to the original biopsies. In culture, two new stable cell lines were obtained, one from a dedifferentiated and one from a grade III conventional central chondrosarcoma biopsy. Their genetic characterization revealed triploid karyotypes, mutations in IDH1, IDH2, and TP53, deletion in CDKN2A and/or MDM2 amplification. These cell lines expressed mesenchymal membrane markers (CD44, 73, 90, 105) and were able to produce a hyaline cartilaginous matrix when cultured in chondrogenic three-dimensional (3D) pellets. Using a high-throughput quantitative RT-PCR approach, we observed that cell lines cultured in monolayer had lost expression of several genes implicated in cartilage development (COL2A1, COMP, ACAN) but restored their expression in 3D cultures. Chondrosarcoma cells in monolayer were sensitive to several conventional chemotherapeutic agents but became resistant to low doses of mafosfamide or doxorubicin when cultured in 3D pellets, in parallel with an altered nucleic accumulation of the drug. Our results indicate that the cartilaginous matrix produced by chondrosarcoma cells may impair diffusion of several drugs and thus contribute to chemoresistance

  3. Evaluation of parameters of color profile models of LCD and LED screens

    Science.gov (United States)

    Zharinov, I. O.; Zharinov, O. O.

    2017-12-01

    The purpose of the research relates to the problem of parametric identification of the color profile model of LCD (liquid crystal display) and LED (light emitting diode) screens. The color profile model of a screen is based on the Grassmann’s Law of additive color mixture. Mathematically the problem is to evaluate unknown parameters (numerical coefficients) of the matrix transformation between different color spaces. Several methods of evaluation of these screen profile coefficients were developed. These methods are based either on processing of some colorimetric measurements or on processing of technical documentation data.

  4. A simple model for predicting solute concentration in agricultural tile lines shortly after application

    Directory of Open Access Journals (Sweden)

    T. S. Steenhuis

    1997-01-01

    Full Text Available Agricultural tile drainage lines have been implicated as a source of pesticide contamination of surface waters. Field experiments were conducted and a simple model was developed to examine preferential transport of applied chemicals to agricultural tile lines. The conceptual model consists of two linear reservoirs, one near the soil surface and one near the tile drain. The connection between the two reservoirs is via preferential flow paths with very little interaction with the soil matrix. The model assumes that only part of the field contributes solutes to the tile drain. The model was evaluated with data from the field experiments in which chloride, 2,4-D, and atrazine concentrations were measured on eight tile-drained plots that were irrigated twice. Atrazine was applied two months prior to the experiment, 2,4-D was sprayed just before the first irrigation, and chloride before the second irrigation. All three chemicals were found in the tile effluent shortly after the rainfall began. Generally, the concentration increased with increased flow rates and decreased exponentially after the rainfall ceased. Although the simple model could simulate the observed chloride concentration patterns in the tile outflow for six of the eight plots, strict validation was not possible because of the difficulty with independent measurement of the data needed for a preferential flow model applied to field conditions. The results show that, to simulate pesticide concentration in tile lines, methods that can measure field averaged preferential flow characteristics need to be developed.

  5. Total Economic Value of Applied Used Green Line Street Model For Tamarindus Indica in Rembang District

    Directory of Open Access Journals (Sweden)

    Rangga Fajar Abdillah

    2018-01-01

    Full Text Available One of the green line street functions is to providing land of carbon sink crops. Javanese tamarind (Tamarindus indica is a type of productive crop that has a carbon absorbent function. The type of Javanese tamarind crops production is wood products and tamarind fruit harvest products. The purpose of this study to determine the total economic value (NET a calculation of the model of the applied use of green line street for Javanese tamarind plants .The economic value that can be calculated from the modeling are Direct Value and Indirect Value. Direct benefit value consist of value of wood and value of crop. While indirect benefits value consist of value of carbon stock and biodiversity value. This research was conducted in May 2017 in Rembang District, Rembang Regency, Central Java. The methods used are allometric modeling method and economic valuation method. Allometric modeling method is used to determine the potential of carbon and wood reserves along the green line street. While the economic valuation method is used to calculate total economic value of the application of this modeling result. Applying of this model has result in total economic value Rp 1,942,788,721 per year. It can be concluded that the green liner street has great potential utilization and should be optimally utilized.

  6. Total Economic Value of Applied Used Green Line Street Model For Tamarindus Indica in Rembang District

    Science.gov (United States)

    Fajar, Abdillah Rangga; Nur, Bambang Azis

    2018-02-01

    One of the green line street functions is to providing land of carbon sink crops. Javanese tamarind (Tamarindus indica) is a type of productive crop that has a carbon absorbent function. The type of Javanese tamarind crops production is wood products and tamarind fruit harvest products. The purpose of this study to determine the total economic value (NET) a calculation of the model of the applied use of green line street for Javanese tamarind plants .The economic value that can be calculated from the modeling are Direct Value and Indirect Value. Direct benefit value consist of value of wood and value of crop. While indirect benefits value consist of value of carbon stock and biodiversity value. This research was conducted in May 2017 in Rembang District, Rembang Regency, Central Java. The methods used are allometric modeling method and economic valuation method. Allometric modeling method is used to determine the potential of carbon and wood reserves along the green line street. While the economic valuation method is used to calculate total economic value of the application of this modeling result. Applying of this model has result in total economic value Rp 1,942,788,721 per year. It can be concluded that the green liner street has great potential utilization and should be optimally utilized.

  7. Multi-Stratum Networks: toward a unified model of on-line identities

    DEFF Research Database (Denmark)

    Rossi, Luca; Magnani, Matteo

    2012-01-01

    One of the reasons behind the success of Social Network Analysis is its simple and general graph model made of nodes (representing individuals) and ties. However, when we focus on our daily on-line experience we must confront a more complex scenario: people inhabitate several on-line spaces...... interacting to several communities active on various technological infrastructures like Twitter, Facebook, YouTube or FourSquare and with distinct social objectives. This constitutes a complex network of interconnected networks where users' identities are spread and where information propagates navigating...

  8. A multiobjective model and evolutionary algorithms for robust time and space assembly line balancing under uncertain demand

    OpenAIRE

    Chica Serrano, Manuel; Bautista Valhondo, Joaquín; Cordón García, Oscar; Damas Arroyo, Sergio

    2016-01-01

    Changes in demand when manufacturing different products require an optimization model that includes robustness in its definition and methods to deal with it. In this work we propose the r-TSALBP, a multiobjective model for assembly line balancing to search for the most robust line configurations when demand changes. The robust model definition considers a set of demand scenarios and presents temporal and spatial overloads of the stations in the assembly line of the products to be assembled. W...

  9. Transmission-line-circuit model of an 85-TW, 25-MA pulsed-power accelerator

    Science.gov (United States)

    Hutsel, B. T.; Corcoran, P. A.; Cuneo, M. E.; Gomez, M. R.; Hess, M. H.; Hinshelwood, D. D.; Jennings, C. A.; Laity, G. R.; Lamppa, D. C.; McBride, R. D.; Moore, J. K.; Myers, A.; Rose, D. V.; Slutz, S. A.; Stygar, W. A.; Waisman, E. M.; Welch, D. R.; Whitney, B. A.

    2018-03-01

    We have developed a physics-based transmission-line-circuit model of the Z pulsed-power accelerator. The 33-m-diameter Z machine generates a peak electrical power as high as 85 TW, and delivers as much as 25 MA to a physics load. The circuit model is used to design and analyze experiments conducted on Z. The model consists of 36 networks of transmission-line-circuit elements and resistors that represent each of Zs 36 modules. The model of each module includes a Marx generator, intermediate-energy-storage capacitor, laser-triggered gas switch, pulse-forming line, self-break water switches, and tri-plate transmission lines. The circuit model also includes elements that represent Zs water convolute, vacuum insulator stack, four parallel outer magnetically insulated vacuum transmission lines (MITLs), double-post-hole vacuum convolute, inner vacuum MITL, and physics load. Within the vacuum-transmission-line system the model conducts analytic calculations of current loss. To calculate the loss, the model simulates the following processes: (i) electron emission from MITL cathode surfaces wherever an electric-field threshold has been exceeded; (ii) electron loss in the MITLs before magnetic insulation has been established; (iii) flow of electrons emitted by the outer-MITL cathodes after insulation has been established; (iv) closure of MITL anode-cathode (AK) gaps due to expansion of cathode plasma; (v) energy loss to MITL conductors operated at high lineal current densities; (vi) heating of MITL-anode surfaces due to conduction current and deposition of electron kinetic energy; (vii) negative-space-charge-enhanced ion emission from MITL anode surfaces wherever an anode-surface-temperature threshold has been exceeded; and (viii) closure of MITL AK gaps due to expansion of anode plasma. The circuit model is expected to be most accurate when the fractional current loss is small. We have performed circuit simulations of 52 Z experiments conducted with a variety of accelerator

  10. Non-LTE modelling of prominence fine structures using hydrogen Lyman-line profiles

    Czech Academy of Sciences Publication Activity Database

    Schwartz, Pavol; Gunár, S.; Curdt, W.

    2015-01-01

    Roč. 577, May (2015), A92/1-A92/10 ISSN 0004-6361 R&D Projects: GA ČR GAP209/12/0906 Grant - others:SAV(SK) VEGA 2/0108/12 Institutional support: RVO:67985815 Keywords : Sun * filaments * prominences Subject RIV: BN - Astronomy, Celestial Mechanics, Astrophysics Impact factor: 4.378, year: 2014

  11. Beyond the standard model of the disc-line spectral profiles from black hole accretion discs

    Czech Academy of Sciences Publication Activity Database

    Sochora, Vjačeslav; Karas, Vladimír; Svoboda, Jiří; Dovčiak, Michal

    2014-01-01

    Roč. 54, č. 4 (2014), s. 301-304 ISSN 1210-2709 R&D Projects: GA ČR(CZ) GC13-00070J Institutional support: RVO:67985815 Keywords : accretion discs * black hole physics * galactic nuclei Subject RIV: BN - Astronomy, Celestial Mechanics, Astrophysics

  12. Linking Signatures of Accretion with Magnetic Field Measurements–Line Profiles are not Significantly Different in Magnetic and Non-magnetic Herbig Ae/Be Stars

    Science.gov (United States)

    Reiter, Megan; Calvet, Nuria; Thanathibodee, Thanawuth; Kraus, Stefan; Cauley, P. Wilson; Monnier, John; Rubinstein, Adam; Aarnio, Alicia; Harries, Tim J.

    2018-01-01

    Herbig Ae/Be stars are young, pre-main-sequence stars that sample the transition in structure and evolution between low- and high-mass stars, providing a key test of accretion processes in higher-mass stars. Few Herbig Ae/Be stars have detected magnetic fields, calling into question whether the magnetospheric accretion paradigm developed for low-mass stars can be scaled to higher masses. We present He I 10830 Å line profiles for 64 Herbig Ae/Be stars with a magnetic field measurement in order to test magnetospheric accretion in the physical regime where its efficacy remains uncertain. Of the five stars with a magnetic field detection, one shows redshifted absorption, indicative of infall, and two show blueshifted absorption, tracing mass outflow. The fraction of redshifted and blueshifted absorption profiles in the non-magnetic Herbig Ae/Be stars is remarkably similar, suggesting that the stellar magnetic field does not affect gas kinematics traced by He I 10830 Å. Line profile morphology does not correlate with the luminosity, rotation rate, mass accretion rate, or disk inclination. Only the detection of a magnetic field and a nearly face-on disk inclination show a correlation (albeit for a few sources). This provides further evidence for weaker dipoles and more complex field topologies as stars develop a radiative envelope. The small number of magnetic Herbig Ae/Be stars has already called into question whether magnetospheric accretion can be scaled to higher masses; accretion signatures are not substantially different in magnetic Herbig Ae/Be stars, casting further doubt that they accrete in the same manner as classical T Tauri stars.

  13. Possibilities of LA-ICP-MS technique for the spatial elemental analysis of the recent fish scales: Line scan vs. depth profiling

    Energy Technology Data Exchange (ETDEWEB)

    Hola, Marketa [Department of Chemistry, Masaryk University of Brno, Kamenice 5, 625 00 Brno (Czech Republic); Kalvoda, Jiri, E-mail: jkalvoda@centrum.cz [Department of Geological Sciences, Masaryk University of Brno, Kotlarska 2, 611 37 Brno (Czech Republic); Novakova, Hana [Department of Chemistry, Masaryk University of Brno, Kamenice 5, 625 00 Brno (Czech Republic); Skoda, Radek [Department of Geological Sciences, Masaryk University of Brno, Kotlarska 2, 611 37 Brno (Czech Republic); Kanicky, Viktor [Department of Chemistry, Masaryk University of Brno, Kamenice 5, 625 00 Brno (Czech Republic)

    2011-01-01

    LA-ICP-MS and solution based ICP-MS in combination with electron microprobe are presented as a method for the determination of the elemental spatial distribution in fish scales which represent an example of a heterogeneous layered bone structure. Two different LA-ICP-MS techniques were tested on recent common carp (Cyprinus carpio) scales: (a)A line scan through the whole fish scale perpendicular to the growth rings. The ablation crater of 55 {mu}m width and 50 {mu}m depth allowed analysis of the elemental distribution in the external layer. Suitable ablation conditions providing a deeper ablation crater gave average values from the external HAP layer and the collagen basal plate. (b)Depth profiling using spot analysis was tested in fish scales for the first time. Spot analysis allows information to be obtained about the depth profile of the elements at the selected position on the sample. The combination of all mentioned laser ablation techniques provides complete information about the elemental distribution in the fish scale samples. The results were compared with the solution based ICP-MS and EMP analyses. The fact that the results of depth profiling are in a good agreement both with EMP and PIXE results and, with the assumed ways of incorporation of the studied elements in the HAP structure, suggests a very good potential for this method.

  14. Prediction of hybrid performance in maize with a ridge regression model employed to DNA markers and mRNA transcription profiles.

    Science.gov (United States)

    Zenke-Philippi, Carola; Thiemann, Alexander; Seifert, Felix; Schrag, Tobias; Melchinger, Albrecht E; Scholten, Stefan; Frisch, Matthias

    2016-03-29

    Ridge regression models can be used for predicting heterosis and hybrid performance. Their application to mRNA transcription profiles has not yet been investigated. Our objective was to compare the prediction accuracy of models employing mRNA transcription profiles with that of models employing genome-wide markers using a data set of 98 maize hybrids from a breeding program. We predicted hybrid performance and mid-parent heterosis for grain yield and grain dry matter content and employed cross validation to assess the prediction accuracy. Prediction with a ridge regression model using random effects for mRNA transcription profiles resulted in similar prediction accuracies than employing the model to DNA markers. For hybrids, of which none of the parental inbred lines was part of the training set, the ridge regression model did not reach the prediction accuracy that was obtained with a model using transcriptome-based distances. We conclude that mRNA transcription profiles are a promising alternative to DNA markers for hybrid prediction, but further studies with larger data sets are required to investigate the superiority of alternative prediction models.

  15. Meta-Model and UML Profile for Requirements Management of Software and Embedded Systems

    Directory of Open Access Journals (Sweden)

    Arpinen Tero

    2011-01-01

    Full Text Available Software and embedded system companies today encounter problems related to requirements management tool integration, incorrect tool usage, and lack of traceability. This is due to utilized tools with no clear meta-model and semantics to communicate requirements between different stakeholders. This paper presents a comprehensive meta-model for requirements management. The focus is on software and embedded system domains. The goal is to define generic requirements management domain concepts and abstract interfaces between requirements management and system development. This leads to a portable requirements management meta-model which can be adapted with various system modeling languages. The created meta-model is prototyped by translating it into a UML profile. The profile is imported into a UML tool which is used for rapid evaluation of meta-model concepts in practice. The developed profile is associated with a proof of concept report generator tool that automatically produces up-to-date documentation from the models in form of web pages. The profile is adopted to create an example model of embedded system requirement specification which is built with the profile.

  16. A New Profile Learning Model for Recommendation System based on Machine Learning Technique

    Directory of Open Access Journals (Sweden)

    Shereen H. Ali

    2016-03-01

    Full Text Available Recommender systems (RSs have been used to successfully address the information overload problem by providing personalized and targeted recommendations to the end users. RSs are software tools and techniques providing suggestions for items to be of use to a user, hence, they typically apply techniques and methodologies from Data Mining. The main contribution of this paper is to introduce a new user profile learning model to promote the recommendation accuracy of vertical recommendation systems. The proposed profile learning model employs the vertical classifier that has been used in multi classification module of the Intelligent Adaptive Vertical Recommendation (IAVR system to discover the user’s area of interest, and then build the user’s profile accordingly. Experimental results have proven the effectiveness of the proposed profile learning model, which accordingly will promote the recommendation accuracy.

  17. The Contemporary Adaptive Model for the Expatriates’ Profile

    Directory of Open Access Journals (Sweden)

    Catalin Popa

    2016-12-01

    Full Text Available Considering the global realities and the technological evolution, within a knowledge-based economy, many organizations aim at the human capital development, setting up not just organizational standards but promoting environmentally HR’s adjustment criteria in order to provide sustainability for recruitment and selection processes. Therefore, developing an adapted employee profile for expatriates should be one of the major imperatives for International Human Resources Management (IHRM function. The work paper pleads for considering IHRM as an important organizational dimension, responsible for adjusting the international employee’s behaviour in accordance with the organizational and external domestic environment, in order to promote the overall value of foreign employees for national economy, culture and society.

  18. Determination of High-Frequency Current Distribution Using EMTP-Based Transmission Line Models with Resulting Radiated Electromagnetic Fields

    Energy Technology Data Exchange (ETDEWEB)

    Mork, B; Nelson, R; Kirkendall, B; Stenvig, N

    2009-11-30

    Application of BPL technologies to existing overhead high-voltage power lines would benefit greatly from improved simulation tools capable of predicting performance - such as the electromagnetic fields radiated from such lines. Existing EMTP-based frequency-dependent line models are attractive since their parameters are derived from physical design dimensions which are easily obtained. However, to calculate the radiated electromagnetic fields, detailed current distributions need to be determined. This paper presents a method of using EMTP line models to determine the current distribution on the lines, as well as a technique for using these current distributions to determine the radiated electromagnetic fields.

  19. Benchmark models, planes lines and points for future SUSY searches at the LHC

    Energy Technology Data Exchange (ETDEWEB)

    AbdusSalam, S.S. [The Abdus Salam International Centre for Theoretical Physics, Trieste (Italy); Allanach, B.C. [Cambridge Univ. (United Kingdom). Dept. of Applied Mathematics and Theoretical Physics; Dreiner, H.K. [Bonn Univ. (DE). Bethe Center for Theoretical Physics and Physikalisches Inst.] (and others)

    2012-03-15

    We define benchmark models for SUSY searches at the LHC, including the CMSSM, NUHM, mGMSB, mAMSB, MM-AMSB and p19MSSM, as well as models with R-parity violation and the NMSSM. Within the parameter spaces of these models, we propose benchmark subspaces, including planes, lines and points along them. The planes may be useful for presenting results of the experimental searches in different SUSY scenarios, while the specific benchmark points may serve for more detailed detector performance tests and comparisons. We also describe algorithms for defining suitable benchmark points along the proposed lines in the parameter spaces, and we define a few benchmark points motivated by recent fits to existing experimental data.

  20. Time-Varying FOPDT Modeling and On-line Parameter Identification

    DEFF Research Database (Denmark)

    Yang, Zhenyu; Sun, Zhen

    2013-01-01

    A type of Time-Varying First-Order Plus Dead-Time (TV-FOPDT) model is extended from SISO format into a MISO version by explicitly taking the disturbance input into consideration. Correspondingly, a set of on-line parameter identification algorithms oriented to MISO TV-FOPDT model are proposed based...... on the Mixed-Integer-Nonlinear Programming, Least-Mean-Square and sliding window techniques. The proposed approaches can simultaneously estimate the time-dependent system parameters, as well as the unknown disturbance input if it is the case, in an on-line manner. The proposed concepts and algorithms...... are firstly illustrated through a numerical example, and then applied to investigate transient superheat dynamic modeling in a supermarket refrigeration system....

  1. A finite-element model for moving contact line problems in immiscible two-phase flow

    Science.gov (United States)

    Kucala, Alec

    2017-11-01

    Accurate modeling of moving contact line (MCL) problems is imperative in predicting capillary pressure vs. saturation curves, permeability, and preferential flow paths for a variety of applications, including geological carbon storage (GCS) and enhanced oil recovery (EOR). The macroscale movement of the contact line is dependent on the molecular interactions occurring at the three-phase interface, however most MCL problems require resolution at the meso- and macro-scale. A phenomenological model must be developed to account for the microscale interactions, as resolving both the macro- and micro-scale would render most problems computationally intractable. Here, a model for the moving contact line is presented as a weak forcing term in the Navier-Stokes equation and applied directly at the location of the three-phase interface point. The moving interface is tracked with the level set method and discretized using the conformal decomposition finite element method (CDFEM), allowing for the surface tension and the wetting model to be computed at the exact interface location. A variety of verification test cases for simple two- and three-dimensional geometries are presented to validate the current MCL model, which can exhibit grid independence when a proper scaling for the slip length is chosen. Sandia National Laboratories is a multi-mission laboratory managed and operated by National Technology and Engineering Solutions of Sandia, LLC., a wholly owned subsidiary of Honeywell International, Inc., for the U.S. Department of Energy's National Nuclear Security Administration under contract DE-NA-0003525.

  2. Modeling of Throughput in Production Lines Using Response Surface Methodology and Artificial Neural Networks

    Directory of Open Access Journals (Sweden)

    Federico Nuñez-Piña

    2018-01-01

    Full Text Available The problem of assigning buffers in a production line to obtain an optimum production rate is a combinatorial problem of type NP-Hard and it is known as Buffer Allocation Problem. It is of great importance for designers of production systems due to the costs involved in terms of space requirements. In this work, the relationship among the number of buffer slots, the number of work stations, and the production rate is studied. Response surface methodology and artificial neural network were used to develop predictive models to find optimal throughput values. 360 production rate values for different number of buffer slots and workstations were used to obtain a fourth-order mathematical model and four hidden layers’ artificial neural network. Both models have a good performance in predicting the throughput, although the artificial neural network model shows a better fit (R=1.0000 against the response surface methodology (R=0.9996. Moreover, the artificial neural network produces better predictions for data not utilized in the models construction. Finally, this study can be used as a guide to forecast the maximum or near maximum throughput of production lines taking into account the buffer size and the number of machines in the line.

  3. A Statistical Model for Natural Gas Standardized Load Profiles

    Czech Academy of Sciences Publication Activity Database

    Brabec, Marek; Konár, Ondřej; Malý, Marek; Pelikán, Emil; Vondráček, Jiří

    2009-01-01

    Roč. 58, č. 1 (2009), s. 123-139 ISSN 0035-9254 R&D Projects: GA AV ČR 1ET400300513 Institutional research plan: CEZ:AV0Z10300504 Keywords : disaggregation * generalized additive models * multiplicative model * non-linear effects * segmentation * semiparametric regression model Subject RIV: JE - Non-nuclear Energetics, Energy Consumption ; Use Impact factor: 1.060, year: 2009

  4. A Hierarchical Bayesian Model to Predict Self-Thinning Line for Chinese Fir in Southern China.

    Directory of Open Access Journals (Sweden)

    Xiongqing Zhang

    Full Text Available Self-thinning is a dynamic equilibrium between forest growth and mortality at full site occupancy. Parameters of the self-thinning lines are often confounded by differences across various stand and site conditions. For overcoming the problem of hierarchical and repeated measures, we used hierarchical Bayesian method to estimate the self-thinning line. The results showed that the self-thinning line for Chinese fir (Cunninghamia lanceolata (Lamb.Hook. plantations was not sensitive to the initial planting density. The uncertainty of model predictions was mostly due to within-subject variability. The simulation precision of hierarchical Bayesian method was better than that of stochastic frontier function (SFF. Hierarchical Bayesian method provided a reasonable explanation of the impact of other variables (site quality, soil type, aspect, etc. on self-thinning line, which gave us the posterior distribution of parameters of self-thinning line. The research of self-thinning relationship could be benefit from the use of hierarchical Bayesian method.

  5. A model of CT dose profiles in Banach space; with applications to CT dosimetry

    Science.gov (United States)

    Weir, Victor J.

    2016-07-01

    In this paper the scatter component of computed tomography dose profiles is modeled using the solution to a nonlinear ordinary differential equation. This scatter function is summed with a modeled primary function of approximate trapezoidal shape. The primary dose profile is modeled to include the analytic continuation of the Heaviside step function. A mathematical theory is developed in a Banach space. The modeled function is used to accurately fit data from a 256-slice GE Revolution scanner. A 60 cm long body phantom is assembled and used for data collection with both a pencil chamber and a Farmer-type chamber.

  6. Curcumin Effect on the Expressional Profile of OCT4, Nanog and Nucleostemin Genes in AGS (Adenocarcinoma Cancer Cell Line

    Directory of Open Access Journals (Sweden)

    Fahmideh Bagrezaei

    2016-07-01

    Full Text Available Background Curcumin is the natural yellow pigment in turmeric isolated from the rhizome of the plant Curcuma longa. Curcumin inhibits formation and invasive cancer cells and destroys cancer cells resistant to chemotherapeutic drugs. Objectives The purpose of this study was the survey of effects of different concentrations of alcoholic curcumin on the octamer-binding transcription factor 4 (OCT4 Nanog and Nucleostemin genes in the AGS (human gastric adenocarcinoma cell line. Materials and Methods In this experimental study the AGS cell line was cultured in RPMI-1640, supplemented with penicillin/streptomycin (100 U/mL and 100 mg/mL, respectively and 10% fetal bovine serum, at 37°C in a humidified atmosphere of 5% CO2. In 60 - 70% cell confluence, the cells were treated with curcumin concentration (20, 40, 100 μL and incubated for 24, 48 and 72 hours. Finally, total RNA were extracted and cDNA were synthesized and the expression of mentioned genes was detected. The data were analyzed by excel software. Results Expression rate of OCT4A, OCT4B, Nanog and Nucleostemin (GLN3 at concentrations less than 20 μg/mL were reduced but OCT4B1 expression showed increased by hours respectively. Conclusions The results showed that curcumin inhibited cell division; also, this study could be the basis for more extensive studies on the anti-cancer effect of the combined plants.

  7. Ensemble Kinetic Modeling of Metabolic Networks from Dynamic Metabolic Profiles

    Science.gov (United States)

    Jia, Gengjie; Stephanopoulos, Gregory; Gunawan, Rudiyanto

    2012-01-01

    Kinetic modeling of metabolic pathways has important applications in metabolic engineering, but significant challenges still remain. The difficulties faced vary from finding best-fit parameters in a highly multidimensional search space to incomplete parameter identifiability. To meet some of these challenges, an ensemble modeling method is developed for characterizing a subset of kinetic parameters that give statistically equivalent goodness-of-fit to time series concentration data. The method is based on the incremental identification approach, where the parameter estimation is done in a step-wise manner. Numerical efficacy is achieved by reducing the dimensionality of parameter space and using efficient random parameter exploration algorithms. The shift toward using model ensembles, instead of the traditional “best-fit” models, is necessary to directly account for model uncertainty during the application of such models. The performance of the ensemble modeling approach has been demonstrated in the modeling of a generic branched pathway and the trehalose pathway in Saccharomyces cerevisiae using generalized mass action (GMA) kinetics. PMID:24957767

  8. Mental Models about Seismic Effects: Students' Profile Based Comparative Analysis

    Science.gov (United States)

    Moutinho, Sara; Moura, Rui; Vasconcelos, Clara

    2016-01-01

    Nowadays, meaningful learning takes a central role in science education and is based in mental models that allow the representation of the real world by individuals. Thus, it is essential to analyse the student's mental models by promoting an easier reconstruction of scientific knowledge, by allowing them to become consistent with the curricular…

  9. Ensemble Kinetic Modeling of Metabolic Networks from Dynamic Metabolic Profiles

    Directory of Open Access Journals (Sweden)

    Gengjie Jia

    2012-11-01

    Full Text Available Kinetic modeling of metabolic pathways has important applications in metabolic engineering, but significant challenges still remain. The difficulties faced vary from finding best-fit parameters in a highly multidimensional search space to incomplete parameter identifiability. To meet some of these challenges, an ensemble modeling method is developed for characterizing a subset of kinetic parameters that give statistically equivalent goodness-of-fit to time series concentration data. The method is based on the incremental identification approach, where the parameter estimation is done in a step-wise manner. Numerical efficacy is achieved by reducing the dimensionality of parameter space and using efficient random parameter exploration algorithms. The shift toward using model ensembles, instead of the traditional “best-fit” models, is necessary to directly account for model uncertainty during the application of such models. The performance of the ensemble modeling approach has been demonstrated in the modeling of a generic branched pathway and the trehalose pathway in Saccharomyces cerevisiae using generalized mass action (GMA kinetics.

  10. Modelling individual temperature profiles from an isolated perfused bovine tongue

    NARCIS (Netherlands)

    Raaymakers, B. W.; Crezee, J.; Lagendijk, J. J.

    2000-01-01

    To predict the temperature distribution during hyperthermia treatments a thermal model that accounts for the thermal effect of blood flow is mandatory. The DIscrete VAsculature (DIVA) thermal model developed at our department is able to do so; geometrically described vessels are handled individually

  11. From drug response profiling to target addiction scoring in cancer cell models

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    Bhagwan Yadav

    2015-10-01

    Full Text Available Deconvoluting the molecular target signals behind observed drug response phenotypes is an important part of phenotype-based drug discovery and repurposing efforts. We demonstrate here how our network-based deconvolution approach, named target addiction score (TAS, provides insights into the functional importance of druggable protein targets in cell-based drug sensitivity testing experiments. Using cancer cell line profiling data sets, we constructed a functional classification across 107 cancer cell models, based on their common and unique target addiction signatures. The pan-cancer addiction correlations could not be explained by the tissue of origin, and only correlated in part with molecular and genomic signatures of the heterogeneous cancer cells. The TAS-based cancer cell classification was also shown to be robust to drug response data resampling, as well as predictive of the transcriptomic patterns in an independent set of cancer cells that shared similar addiction signatures with the 107 cancers. The critical protein targets identified by the integrated approach were also shown to have clinically relevant mutation frequencies in patients with various cancer subtypes, including not only well-established pan-cancer genes, such as PTEN tumor suppressor, but also a number of targets that are less frequently mutated in specific cancer types, including ABL1 oncoprotein in acute myeloid leukemia. An application to leukemia patient primary cell models demonstrated how the target deconvolution approach offers functional insights into patient-specific addiction patterns, such as those indicative of their receptor-type tyrosine-protein kinase FLT3 internal tandem duplication (FLT3-ITD status and co-addiction partners, which may lead to clinically actionable, personalized drug treatment developments. To promote its application to the future drug testing studies, we have made available an open-source implementation of the TAS calculation in the form

  12. Investigating Margin and Grounding Line Dynamics with a Coupled Ice and Sea Level Model

    Science.gov (United States)

    Kuchar, J.; Milne, G. A.

    2017-12-01

    We present results from the coupling of an adaptive mesh glaciological model (BISICLES) with a model of glacial isostatic adjustment and sea level. We apply this coupled model to study the deglaciation of the Greenland Ice Sheet (GrIS) from the last glacial maximum. The proximity of the GrIS to the much larger Laurentide results in an east-west gradient in sea level rates across Greenland during the deglaciation. We investigate the impacts of this sea level gradient on ice and grounding line dynamics at the margins, as well as the influence of both local and non-local ice on sea level and ice dynamics.

  13. IN SILICO MODELLING OF CYTOTOXIC BEHAVIOUR OF ANTI-LEUKEMIC COMPOUNDS ON HL-60 CELL LINE

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    David Ebuka Arthur

    2016-05-01

    Full Text Available This research employs multiple linear regression technique in the modelling of some potent anti-leukemic compounds using paDEL molecular descriptor software calculator, to identify the best relationship between the chemical structure and toxicities of th