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Sample records for models advection diffusion

  1. Hopf bifurcation in a delayed reaction-diffusion-advection population model

    Science.gov (United States)

    Chen, Shanshan; Lou, Yuan; Wei, Junjie

    2018-04-01

    In this paper, we investigate a reaction-diffusion-advection model with time delay effect. The stability/instability of the spatially nonhomogeneous positive steady state and the associated Hopf bifurcation are investigated when the given parameter of the model is near the principle eigenvalue of an elliptic operator. Our results imply that time delay can make the spatially nonhomogeneous positive steady state unstable for a reaction-diffusion-advection model, and the model can exhibit oscillatory pattern through Hopf bifurcation. The effect of advection on Hopf bifurcation values is also considered, and our results suggest that Hopf bifurcation is more likely to occur when the advection rate increases.

  2. Advection-diffusion model for the simulation of air pollution distribution from a point source emission

    Science.gov (United States)

    Ulfah, S.; Awalludin, S. A.; Wahidin

    2018-01-01

    Advection-diffusion model is one of the mathematical models, which can be used to understand the distribution of air pollutant in the atmosphere. It uses the 2D advection-diffusion model with time-dependent to simulate air pollution distribution in order to find out whether the pollutants are more concentrated at ground level or near the source of emission under particular atmospheric conditions such as stable, unstable, and neutral conditions. Wind profile, eddy diffusivity, and temperature are considered in the model as parameters. The model is solved by using explicit finite difference method, which is then visualized by a computer program developed using Lazarus programming software. The results show that the atmospheric conditions alone influencing the level of concentration of pollutants is not conclusive as the parameters in the model have their own effect on each atmospheric condition.

  3. Modelling uncertainties in the diffusion-advection equation for radon transport in soil using interval arithmetic.

    Science.gov (United States)

    Chakraverty, S; Sahoo, B K; Rao, T D; Karunakar, P; Sapra, B K

    2018-02-01

    Modelling radon transport in the earth crust is a useful tool to investigate the changes in the geo-physical processes prior to earthquake event. Radon transport is modeled generally through the deterministic advection-diffusion equation. However, in order to determine the magnitudes of parameters governing these processes from experimental measurements, it is necessary to investigate the role of uncertainties in these parameters. Present paper investigates this aspect by combining the concept of interval uncertainties in transport parameters such as soil diffusivity, advection velocity etc, occurring in the radon transport equation as applied to soil matrix. The predictions made with interval arithmetic have been compared and discussed with the results of classical deterministic model. The practical applicability of the model is demonstrated through a case study involving radon flux measurements at the soil surface with an accumulator deployed in steady-state mode. It is possible to detect the presence of very low levels of advection processes by applying uncertainty bounds on the variations in the observed concentration data in the accumulator. The results are further discussed. Copyright © 2017 Elsevier Ltd. All rights reserved.

  4. Advection diffusion model for particles deposition in Rayleigh-Benard turbulent flows

    International Nuclear Information System (INIS)

    Oresta, P.; Lippolis, A.; Verzicco, R.; Soldati, A.

    2005-01-01

    In this paper, Direct Numerical Simulation (DNS) and Lagrangian Particle Tracking are used to precisely investigate the turbulent thermally driven flow and particles dispersion in a closed, slender cylindrical domain. The numerical simulations are carried out for Rayleigh (Ra) and Prandtl numbers (Pr) equal to Ra = 2X10 8 and Pr = 0.7, considering three sets of particles with Stokes numbers, based on Kolmogorov scale, equal to St k 1.3, St k 0.65 and St k = 0.13. This data are used to calculate a priori the drift velocity and the turbulent diffusion coefficient for the Advection Diffusion model. These quantities are function of the Stokes, Froude, Rayleigh and Prandtl numbers only. One dimensional, time dependent, Advection- Diffusion Equation (ADE) is presented to predict particles deposition in Rayleigh-Benard flow in the cylindrical domain. This archetype configuration models flow and aerosol dynamics, produced in case of accident in the passive containment cooling system (PCCS) of a nuclear reactor. ADE results show a good agreement with DNS data for all the sets of particles investigated. (author)

  5. On one model problem for the reaction-diffusion-advection equation

    Science.gov (United States)

    Davydova, M. A.; Zakharova, S. A.; Levashova, N. T.

    2017-09-01

    The asymptotic behavior of the solution with boundary layers in the time-independent mathematical model of reaction-diffusion-advection arising when describing the distribution of greenhouse gases in the surface atmospheric layer is studied. On the basis of the asymptotic method of differential inequalities, the existence of a boundary-layer solution and its asymptotic Lyapunov stability as a steady-state solution of the corresponding parabolic problem is proven. One of the results of this work is the determination of the local domain of the attraction of a boundary-layer solution.

  6. Numerical Modeling of Deep Mantle Convection: Advection and Diffusion Schemes for Marker Methods

    Science.gov (United States)

    Mulyukova, Elvira; Dabrowski, Marcin; Steinberger, Bernhard

    2013-04-01

    Thermal and chemical evolution of Earth's deep mantle can be studied by modeling vigorous convection in a chemically heterogeneous fluid. Numerical modeling of such a system poses several computational challenges. Dominance of heat advection over the diffusive heat transport, and a negligible amount of chemical diffusion results in sharp gradients of thermal and chemical fields. The exponential dependence of the viscosity of mantle materials on temperature also leads to high gradients of the velocity field. The accuracy of many numerical advection schemes degrades quickly with increasing gradient of the solution, while the computational effort, in terms of the scheme complexity and required resolution, grows. Additional numerical challenges arise due to a large range of length-scales characteristic of a thermochemical convection system with highly variable viscosity. To examplify, the thickness of the stem of a rising thermal plume may be a few percent of the mantle thickness. An even thinner filament of an anomalous material that is entrained by that plume may consitute less than a tenth of a percent of the mantle thickness. We have developed a two-dimensional FEM code to model thermochemical convection in a hollow cylinder domain, with a depth- and temperature-dependent viscosity representative of the mantle (Steinberger and Calderwood, 2006). We use marker-in-cell method for advection of chemical and thermal fields. The main advantage of perfoming advection using markers is absence of numerical diffusion during the advection step, as opposed to the more diffusive field-methods. However, in the common implementation of the marker-methods, the solution of the momentum and energy equations takes place on a computational grid, and nodes do not generally coincide with the positions of the markers. Transferring velocity-, temperature-, and chemistry- information between nodes and markers introduces errors inherent to inter- and extrapolation. In the numerical scheme

  7. Computation of diffusion coefficients for waters of Gauthami Godavari estuary using one-dimensional advection-diffusion model

    Digital Repository Service at National Institute of Oceanography (India)

    Jyothi, D; Murty, T.V.R.; Sarma, V.V.; Rao, D

    of Marine Sciences Vol. 29, June 2000, pp. 185-187 Short Communication Computation of diffusion coefficients for waters of Gauthami Godavari estuary using one-dimensional advection-diffusion model D Jyothi, T V Ramana Murty, V V Sarma & D P Rao National... and April '96. Salinity was estimated using Kundsen's titration method 1 with an accuracy of ? O.OlxlO"3. Depth at the stations was measured using a portable echo sounder. The average depth along the 32 km stretch varied from 12 m at the mouth to 2 m...

  8. Smoothed particle hydrodynamics model for Landau-Lifshitz-Navier-Stokes and advection-diffusion equations.

    Science.gov (United States)

    Kordilla, Jannes; Pan, Wenxiao; Tartakovsky, Alexandre

    2014-12-14

    We propose a novel smoothed particle hydrodynamics (SPH) discretization of the fully coupled Landau-Lifshitz-Navier-Stokes (LLNS) and stochastic advection-diffusion equations. The accuracy of the SPH solution of the LLNS equations is demonstrated by comparing the scaling of velocity variance and the self-diffusion coefficient with kinetic temperature and particle mass obtained from the SPH simulations and analytical solutions. The spatial covariance of pressure and velocity fluctuations is found to be in a good agreement with theoretical models. To validate the accuracy of the SPH method for coupled LLNS and advection-diffusion equations, we simulate the interface between two miscible fluids. We study formation of the so-called "giant fluctuations" of the front between light and heavy fluids with and without gravity, where the light fluid lies on the top of the heavy fluid. We find that the power spectra of the simulated concentration field are in good agreement with the experiments and analytical solutions. In the absence of gravity, the power spectra decay as the power -4 of the wavenumber-except for small wavenumbers that diverge from this power law behavior due to the effect of finite domain size. Gravity suppresses the fluctuations, resulting in much weaker dependence of the power spectra on the wavenumber. Finally, the model is used to study the effect of thermal fluctuation on the Rayleigh-Taylor instability, an unstable dynamics of the front between a heavy fluid overlaying a light fluid. The front dynamics is shown to agree well with the analytical solutions.

  9. A nonlocal and periodic reaction-diffusion-advection model of a single phytoplankton species.

    Science.gov (United States)

    Peng, Rui; Zhao, Xiao-Qiang

    2016-02-01

    In this article, we are concerned with a nonlocal reaction-diffusion-advection model which describes the evolution of a single phytoplankton species in a eutrophic vertical water column where the species relies solely on light for its metabolism. The new feature of our modeling equation lies in that the incident light intensity and the death rate are assumed to be time periodic with a common period. We first establish a threshold type result on the global dynamics of this model in terms of the basic reproduction number R0. Then we derive various characterizations of R0 with respect to the vertical turbulent diffusion rate, the sinking or buoyant rate and the water column depth, respectively, which in turn give rather precise conditions to determine whether the phytoplankton persist or become extinct. Our theoretical results not only extend the existing ones for the time-independent case, but also reveal new interesting effects of the modeling parameters and the time-periodic heterogeneous environment on persistence and extinction of the phytoplankton species, and thereby suggest important implications for phytoplankton growth control.

  10. Application of vertical advection-diffusion model for studying CO2 and O2 profiles in central Arabian Sea

    Digital Repository Service at National Institute of Oceanography (India)

    AnilKumar, N.; Singbal, S.Y.S.

    The vertical advection-diffusion model proposed by Craig has been applied to the study of CO sub(2) and O sub(2) profiles in Central Arabian Sea. Distributions of total CO Sub(2) and O sub(2) are explained better by expressions involving exponential...

  11. One-dimensional advection diffusion modeling of upwelled hyporheic stream temperature along Deer Creek, Vina, California

    Science.gov (United States)

    Butler, N. L.; Hunt, J. R.; Tompkins, M. R.

    2011-12-01

    Hyporheic exchange can locally mitigate thermal stress caused by high water temperatures by upwelling water cooler than ambient stream temperatures and thus providing thermal refuge for critical cold water organisms like salmonids. Ten hyporheic exchange locations were identified by dye tracer experiments along a 16 km stretch of Deer Creek near Vina, California. Four months of continuous temperature measurements were made in the late summer of 2005 at each downwelling and upwelling location and revealed upwelled temperatures that were lagged in time and damped in amplitude. Upwelling hyporheic temperatures that could provide thermal refuge were observed in seven of the ten temperature records. This data was modeled by an analytical one-dimensional advection-diffusion equation solution using subsurface water velocity and the hydrodynamic dispersivity fitting parameters. At each location variations in upwelling temperature are explained by changing subsurface water velocities and flow pathways. The lag time in hyporheic heat flow ranged from a few hours to 44 hours over distances of 15 to 76 meters. The daily stream temperature variation was on the order of 10°C, which was reduced to 1 to 8°C in the upwelling hyporheic flow. At four locations, there was evidence that changes in stream flow produced changes in the amplitude and phase of the upwelling hyporheic water temperature by altering both the subsurface water velocity and hydrodynamic dispersivity. At two locations, additional cold water refuge was created by decreases in surface water flow because it reduced the estimated subsurface water velocity increasing the lag time between the peak surface water and subsurface water temperatures. Increases in surface water flow increased the dispersivity at three locations providing more cold water refuge by reducing the amplitude of the upwelling hyporheic temperature. Such changes alter thermal refuge for salmonids placing a new emphasis on managing surface water

  12. Impact of a monotonic advection scheme with low numerical diffusion on transport modeling of emissions from biomass burning

    Directory of Open Access Journals (Sweden)

    Saulo Frietas

    2012-01-01

    Full Text Available An advection scheme, which maintains the initial monotonic characteristics of a tracer field being transported and at the same time produces low numerical diffusion, is implemented in the Coupled Chemistry-Aerosol-Tracer Transport model to the Brazilian developments on the Regional Atmospheric Modeling System (CCATT-BRAMS. Several comparisons of transport modeling using the new and original (non-monotonic CCATT-BRAMS formulations are performed. Idealized 2-D non-divergent or divergent and stationary or time-dependent wind fields are used to transport sharply localized tracer distributions, as well as to verify if an existent correlation of the mass mixing ratios of two interrelated tracers is kept during the transport simulation. Further comparisons are performed using realistic 3-D wind fields. We then perform full simulations of real cases using data assimilation and complete atmospheric physics. In these simulations, we address the impacts of both advection schemes on the transport of biomass burning emissions and the formation of secondary species from non-linear chemical reactions of precursors. The results show that the new scheme produces much more realistic transport patterns, without generating spurious oscillations and under- and overshoots or spreading mass away from the local peaks. Increasing the numerical diffusion in the original scheme in order to remove the spurious oscillations and maintain the monotonicity of the transported field causes excessive smoothing in the tracer distribution, reducing the local gradients and maximum values and unrealistically spreading mass away from the local peaks. As a result, huge differences (hundreds of % for relatively inert tracers (like carbon monoxide are found in the smoke plume cores. In terms of the secondary chemical species formed by non-linear reactions (like ozone, we found differences of up to 50% in our simulations.

  13. Measurements on, and modelling of diffusive and advective radon transport in soil

    DEFF Research Database (Denmark)

    Graff, E.R. van der; Witteman, G.A.A.; Spoel, W.H. van der

    1994-01-01

    Results are presented of measurements on radon transport in soil under controlled conditions with a laboratory facility consisting of a stainless steel vessel (height and diameter 2 m) filled with a uniform column of sand. At several depths under the sand surface, probes are radially inserted...... into the vessel to measure the radon concentration in the soil gas. To study advective radon transport a perforated circular box is placed in the sand close to the bottom of the vessel. By pressurising this box, an air flow through the sand column is induced. Radon concentration profiles were measured without...

  14. Measurements on, and modelling of diffusive and advective radon transport in soil

    DEFF Research Database (Denmark)

    Graff, E.R. van der; Witteman, G.A.A.; Spoel, W.H. van der

    1994-01-01

    Results are presented of measurements on radon transport in soil under controlled conditions with a laboratory facility consisting of a stainless steel vessel (height and diameter 2 m) filled with a uniform column of sand. At several depths under the sand surface, probes are radially inserted...... into the vessel to measure the radon concentration in the soil gas. To study advective radon transport a perforated circular box is placed in the sand close to the bottom of the vessel. By pressurising this box, an air flow through the sand column is induced. Radon concentration profiles were measured without...... an air flow as a function of time, and for several values of the air flow, equilibrium radon concentration profiles were measured....

  15. MODEL FOR UNSTEADY OF DIFFUSIONADVECTION OF RADON IN SOIL – ATMOSPHERE

    Directory of Open Access Journals (Sweden)

    Parovik R.I.

    2010-04-01

    Full Text Available We consider a mathematical model for unsteady transport of radon from the constant coefficients in the soil – atmosphere. An explicit analytical solution for this model and built at different times of his profiles.

  16. spate: An R Package for Spatio-Temporal Modeling with a Stochastic Advection-Diffusion Process

    Directory of Open Access Journals (Sweden)

    Fabio Sigrist

    2015-02-01

    This package aims at providing tools for simulating and modeling of spatio-temporal processes using an SPDE based approach. The package contains functions for obtaining parametrizations, such as propagator or innovation covariance matrices, of the spatio-temporal model. This allows for building customized hierarchical Bayesian models using the SPDE based model at the process stage. The functions of the package then provide computationally efficient algorithms needed for doing inference with the hierarchical model. Furthermore, an adaptive Markov chain Monte Carlo (MCMC algorithm implemented in the package can be used as an algorithm for doing inference without any additional modeling. This function is flexible and allows for application specific customizing. The MCMC algorithm supports data that follow a Gaussian or a censored distribution with point mass at zero. Spatio-temporal covariates can be included in the model through a regression term.

  17. An error frequently made in the evaluation of advective transport in two dimensional Lagrangian models of advection-diffusion in coral reef waters

    OpenAIRE

    Spagnol, S.; Wolanski, E.; Deleersnijder, E.; Brinkman, R.; McAllister, F.; Cushman-Roisin, B.; Hanert, E.

    2002-01-01

    The flushing time of reef lagoons estimated over recent years by 2-dimensional Lagrangian algorithms may have been significantly overestimated. This is due to a numerical artefact, leading to spurious accumulation of particles in regions where the water depth or the diffusivity is smallest. The nature of this numerical problem has remained largely unknown in the coral reef modelling community, although it was described, along with an efficient remedy, in several studies which are about a deca...

  18. Bounce-averaged advection and diffusion coefficients for monochromatic electromagnetic ion cyclotron wave: Comparison between test-particle and quasi-linear models

    Science.gov (United States)

    Su, Z.; Zhu, H.; Xiao, F.; Zheng, H.; Shen, C.; Wang, Y.; Wang, S.

    2012-12-01

    The electromagnetic ion cyclotron (EMIC) wave has been long suggested to be responsible for the rapid loss of radiation belt relativistic electrons. The test-particle simulations are performed to calculate the bounce-averaged pitch-angle advection and diffusion coefficients for parallel-propagating monochromatic EMIC waves. The comparison between test-particle (TP) and quasi-linear (QL) transport coefficients is further made to quantify the influence of nonlinear processes. For typical EMIC waves, four nonlinear physical processes, i.e., the boundary reflection effect, finite perturbation effect, phase bunching and phase trapping, are found to occur sequentially from small to large equatorial pitch angles. The pitch-angle averaged finite perturbation effect yields slight differences between the transport coefficients of TP and QL models. The boundary reflection effect and phase bunching produce an average reduction of >80% in the diffusion coefficients but a small change in the corresponding average advection coefficients, tending to lower the loss rate predicted by QL theory. In contrast, the phase trapping causes continuous negative advection toward the loss cone and a minor change in the corresponding diffusion coefficients, tending to increase the loss rate predicted by QL theory. For small amplitude EMIC waves, the transport coefficients grow linearly with the square of wave amplitude. As the amplitude increases, the boundary reflection effect, phase bunching and phase trapping start to occur. Consequently, the TP advection coefficients deviate from the linear growth with the square of wave amplitude, and the TP diffusion coefficients become saturated with the amplitude approaching 1nT or above. The current results suggest that these nonlinear processes can cause significant deviation of transport coefficients from the prediction of QL theory, which should be taken into account in the future simulations of radiation belt dynamics driven by the EMIC waves.

  19. Diffusion-advection within dynamic biological gaps driven by structural motion

    Science.gov (United States)

    Asaro, Robert J.; Zhu, Qiang; Lin, Kuanpo

    2018-04-01

    To study the significance of advection in the transport of solutes, or particles, within thin biological gaps (channels), we examine theoretically the process driven by stochastic fluid flow caused by random thermal structural motion, and we compare it with transport via diffusion. The model geometry chosen resembles the synaptic cleft; this choice is motivated by the cleft's readily modeled structure, which allows for well-defined mechanical and physical features that control the advection process. Our analysis defines a Péclet-like number, AD, that quantifies the ratio of time scales of advection versus diffusion. Another parameter, AM, is also defined by the analysis that quantifies the full potential extent of advection in the absence of diffusion. These parameters provide a clear and compact description of the interplay among the well-defined structural, geometric, and physical properties vis-a ̀-vis the advection versus diffusion process. For example, it is found that AD˜1 /R2 , where R is the cleft diameter and hence diffusion distance. This curious, and perhaps unexpected, result follows from the dependence of structural motion that drives fluid flow on R . AM, on the other hand, is directly related (essentially proportional to) the energetic input into structural motion, and thereby to fluid flow, as well as to the mechanical stiffness of the cleftlike structure. Our model analysis thus provides unambiguous insight into the prospect of competition of advection versus diffusion within biological gaplike structures. The importance of the random, versus a regular, nature of structural motion and of the resulting transient nature of advection under random motion is made clear in our analysis. Further, by quantifying the effects of geometric and physical properties on the competition between advection and diffusion, our results clearly demonstrate the important role that metabolic energy (ATP) plays in this competitive process.

  20. Lattice Boltzmann method for the fractional advection-diffusion equation

    Science.gov (United States)

    Zhou, J. G.; Haygarth, P. M.; Withers, P. J. A.; Macleod, C. J. A.; Falloon, P. D.; Beven, K. J.; Ockenden, M. C.; Forber, K. J.; Hollaway, M. J.; Evans, R.; Collins, A. L.; Hiscock, K. M.; Wearing, C.; Kahana, R.; Villamizar Velez, M. L.

    2016-04-01

    Mass transport, such as movement of phosphorus in soils and solutes in rivers, is a natural phenomenon and its study plays an important role in science and engineering. It is found that there are numerous practical diffusion phenomena that do not obey the classical advection-diffusion equation (ADE). Such diffusion is called abnormal or superdiffusion, and it is well described using a fractional advection-diffusion equation (FADE). The FADE finds a wide range of applications in various areas with great potential for studying complex mass transport in real hydrological systems. However, solution to the FADE is difficult, and the existing numerical methods are complicated and inefficient. In this study, a fresh lattice Boltzmann method is developed for solving the fractional advection-diffusion equation (LabFADE). The FADE is transformed into an equation similar to an advection-diffusion equation and solved using the lattice Boltzmann method. The LabFADE has all the advantages of the conventional lattice Boltzmann method and avoids a complex solution procedure, unlike other existing numerical methods. The method has been validated through simulations of several benchmark tests: a point-source diffusion, a boundary-value problem of steady diffusion, and an initial-boundary-value problem of unsteady diffusion with the coexistence of source and sink terms. In addition, by including the effects of the skewness β , the fractional order α , and the single relaxation time τ , the accuracy and convergence of the method have been assessed. The numerical predictions are compared with the analytical solutions, and they indicate that the method is second-order accurate. The method presented will allow the FADE to be more widely applied to complex mass transport problems in science and engineering.

  1. Modelling the coupled chemico-osmotic and advective-diffusive transport of nitrate salts in the Callovo-Oxfordian clay

    International Nuclear Information System (INIS)

    Baechler, S.; Croise, J.; Altmann, S.

    2010-01-01

    Document available in extended abstract form only. Fine-grained saturated porous materials can act as a semi-permeable osmotic membrane when exposed to a solute concentration gradient. The ions diffusion is hindered while water movement towards higher concentrations takes place in the semi-permeable membrane. The capacity of the fine-grained porous material to act as a semi permeable osmotic membrane is referred to as the osmotic efficiency (its value is 1 when the membranes is ideal, less than 1 when the membrane is leaky, allowing diffusion). The efficiency to retain ions in solution is dependent on the thickness of the diffuse double layer which itself depends on the solution concentration in the membrane. Clay rich formations have been shown to act as non-ideal semi-permeable membrane. Andra is investigating the Callovo-Oxfordian clay as a host rock for intermediate-level to high-level radioactive waste. In this context, it has been feared that osmotic water flows generated by the release of sodium nitrate salt in high concentrations, out of intermediate radioactive bituminous waste, could induce important over-pressures. The latest would eventually lead to fracturing of the host rock around the waste disposal drifts. The purpose of the present study was to develop a simulation code with the capacity to assess the potential impact of osmosis on: the re-saturation of the waste disposal drifts, the pressure evolution and the solute transport in and around a waste disposal drift. A chemo-osmotic coupled flow and transport model was implemented using the FlexPDE-finite element library. Our model is based on the chemo-osmotic formulation developed by Bader and Kooi, 2005. The model has been extended to highly concentrated solutions based on Pitzer's equation. In order to assess the impact of osmotic flow on the re-saturation time, the model was also designed to allow unsaturated flow modelling. The model configuration consists of an initially unsaturated 2D

  2. Multiple Scale Reaction-Diffusion-Advection Problems with Moving Fronts

    Science.gov (United States)

    Nefedov, Nikolay

    2016-06-01

    In this work we discuss the further development of the general scheme of the asymptotic method of differential inequalities to investigate stability and motion of sharp internal layers (fronts) for nonlinear singularly perturbed parabolic equations, which are called in applications reaction-diffusion-advection equations. Our approach is illustrated for some new important cases of initial boundary value problems. We present results on stability and on the motion of the fronts.

  3. Process of advective diffusive enrichment using differential gradients and the effects of variations in relaxation times

    International Nuclear Information System (INIS)

    Suarez Antola R.; Bernasconi, G.; Bertolotti, Angel

    1995-01-01

    A multicomponent solution is considered in advective diffusion chambers between two half-permeable barriers. A mathematical model is developed to calculate the concentration fields in the chamber. A new enrichment process is proposed and assessed using a digital simulation of space-time dynamics, based on the analytical solution of the model

  4. Dynamics and asymptotic profiles of steady states of an epidemic model in advective environments

    Science.gov (United States)

    Cui, Renhao; Lam, King-Yeung; Lou, Yuan

    2017-08-01

    We study the dynamics of a SIS epidemic model of reaction-diffusion-advection type. The persistence of infected and susceptible populations and the global stability of the disease free equilibrium are established when the basic reproduction number is greater than or less than or equal to one, respectively. We further consider the effects of diffusion and advection on asymptotic profiles of endemic equilibrium: When the advection rate is relatively large comparing to the diffusion rates of both populations, then two populations persist and concentrate at the downstream end. As the diffusion rate of the susceptible population tends to zero, the density of the infected population decays exponentially for positive advection rate but linearly when there is no advection. Our results suggest that advection can help speed up the elimination of disease.

  5. Advective-diffusive transport of D2O in unsaturated media under evaporation condition

    International Nuclear Information System (INIS)

    Koarashi, Jun; Atarashi-Andoh, Mariko; Amano, Hikaru; Yamazawa, Hiromi; Iida, Takao

    2003-01-01

    Advective-diffusive transport of HTO in unsaturated media was investigated empirically using deuterated water (D 2 O) and columns filled with glass beads. The tortuosity factor was evaluated by numerical model calculations corresponding to first experiment for diffusion under no-evaporation condition. Temporal variations in depth profiles of D 2 O concentrations in the columns were observed by second experiment, which considers the transferring and spreading of D 2 O by pore-water flow caused by evaporation. Measurements and model calculations indicated that diffusion was about two times more efficient than dispersion for D 2 O spreading process under this evaporation condition. (author)

  6. Development of Multigrid Methods for diffusion, Advection, and the incompressible Navier-Stokes Equations

    Energy Technology Data Exchange (ETDEWEB)

    Gjesdal, Thor

    1997-12-31

    This thesis discusses the development and application of efficient numerical methods for the simulation of fluid flows, in particular the flow of incompressible fluids. The emphasis is on practical aspects of algorithm development and on application of the methods either to linear scalar model equations or to the non-linear incompressible Navier-Stokes equations. The first part deals with cell centred multigrid methods and linear correction scheme and presents papers on (1) generalization of the method to arbitrary sized grids for diffusion problems, (2) low order method for advection-diffusion problems, (3) attempt to extend the basic method to advection-diffusion problems, (4) Fourier smoothing analysis of multicolour relaxation schemes, and (5) analysis of high-order discretizations for advection terms. The second part discusses a multigrid based on pressure correction methods, non-linear full approximation scheme, and papers on (1) systematic comparison of the performance of different pressure correction smoothers and some other algorithmic variants, low to moderate Reynolds numbers, and (2) systematic study of implementation strategies for high order advection schemes, high-Re flow. An appendix contains Fortran 90 data structures for multigrid development. 160 refs., 26 figs., 22 tabs.

  7. The role of advection in a two-species competition model

    CERN Document Server

    Averill, Isabel; Lou, Yuan

    2017-01-01

    The effects of weak and strong advection on the dynamics of reaction-diffusion models have long been studied. In contrast, the role of intermediate advection remains poorly understood. For example, concentration phenomena can occur when advection is strong, providing a mechanism for the coexistence of multiple populations, in contrast with the situation of weak advection where coexistence may not be possible. The transition of the dynamics from weak to strong advection is generally difficult to determine. In this work the authors consider a mathematical model of two competing populations in a spatially varying but temporally constant environment, where both species have the same population dynamics but different dispersal strategies: one species adopts random dispersal, while the dispersal strategy for the other species is a combination of random dispersal and advection upward along the resource gradient. For any given diffusion rates the authors consider the bifurcation diagram of positive steady states by u...

  8. Group classification and symmetry reduction of a (2+1) dimensional diffusion-advection equation

    Science.gov (United States)

    Elwakil, S. A.; Zahran, M. A.; Sabry, R.

    2005-11-01

    Based on classical Lie group method, we consider the continuum problem of the driven diffusive flow of particles past an impenetrable obstacle (rod) of length L. The infinitesimals of the diffusion-advection equation in (2+1) dimensions were found for an arbitrary nonlinear advection. The symmetries corresponding to different forms of the nonlinear advection are obtained. Three models are studied in details. The results show that the presence of an obstacle, whether stationary or moving, in a driven diffusive flow with nonlinear drift will distort the local concentration profile to a state which divided the (x, y)-plane into two regions. The concentration is relatively higher in one side than the other side, apart from the value of D/{\\upsilon L}, where D is the diffusion coefficient and υ is the drift velocity. This problem has relevance for the size segregation of particulate matter which results from the relative motion of different-size particles induced by shaking. Also, the obtained solutions include soliton, periodical, rational and singular solutions.

  9. Partitioned coupling of advection-diffusion-reaction systems and Brinkman flows

    Science.gov (United States)

    Lenarda, Pietro; Paggi, Marco; Ruiz Baier, Ricardo

    2017-09-01

    We present a partitioned algorithm aimed at extending the capabilities of existing solvers for the simulation of coupled advection-diffusion-reaction systems and incompressible, viscous flow. The space discretisation of the governing equations is based on mixed finite element methods defined on unstructured meshes, whereas the time integration hinges on an operator splitting strategy that exploits the differences in scales between the reaction, advection, and diffusion processes, considering the global system as a number of sequentially linked sets of partial differential, and algebraic equations. The flow solver presents the advantage that all unknowns in the system (here vorticity, velocity, and pressure) can be fully decoupled and thus turn the overall scheme very attractive from the computational perspective. The robustness of the proposed method is illustrated with a series of numerical tests in 2D and 3D, relevant in the modelling of bacterial bioconvection and Boussinesq systems.

  10. Analytical solutions for the fractional diffusion-advection equation describing super-diffusion

    Directory of Open Access Journals (Sweden)

    Gómez Francisco

    2016-01-01

    Full Text Available This paper presents the alternative construction of the diffusion-advection equation in the range (1; 2. The fractional derivative of the Liouville-Caputo type is applied. Analytical solutions are obtained in terms of Mittag-Leffler functions. In the range (1; 2 the concentration exhibits the superdiffusion phenomena and when the order of the derivative is equal to 2 ballistic diffusion can be observed, these behaviors occur in many physical systems such as semiconductors, quantum optics, or turbulent diffusion. This mathematical representation can be applied in the description of anomalous complex processes.

  11. Methods to assess radioisotope migration in cementitious media using radial diffusion and advection

    International Nuclear Information System (INIS)

    Hinchliff, J.; Felipe-Sotero, M.; Evans, N.D.M.; Read, D.; Drury, D.

    2012-01-01

    One of the primary aims of this project is to understand how a range of isotopes associated with radioactive wastes, move through the cementitious media potentially present in a geological disposal facility (GDF). This paper describes the development of experimental methods that use radial flow from intact cylinders of cementitious material to evaluate the potential for diffusion and advection of relevant isotopes through Nirex reference vault backfill (NRVB). The small scale and cost effectiveness of the approach means that multiple experiments can be undertaken encompassing the full range of physical (and chemical) variations. The radial flow experimental method uses small pre-cast cylinders of the matrix under investigation. For diffusion an appropriate concentration of the isotope of interest ( 90 Sr in the present experiments) is introduced into a cavity in the centre of the cylinder, which is then sealed, and placed in a solution previously equilibrated with the matrix. The increase in concentration of the isotope in the external solution is then determined at defined time intervals. For advection 90 Sr is similarly introduced into the central core of the cylinder and then equilibrated water is forced under nitrogen pressure, from the central core to the outside of the cylinder where it is collected in a tray prior to analysis. Both experimental set ups and results have been modelled using conventional numerical solutions and the simulation package GoldSim. Concerning diffusion experiments the modelled data reproduces the observed data effectively with a right diffusivity value of 9*10 -11 m 2 /s. Concerning advection results are more mitigated and need further investigation

  12. A fully implicit method for 3D quasi-steady state magnetic advection-diffusion.

    Energy Technology Data Exchange (ETDEWEB)

    Siefert, Christopher; Robinson, Allen Conrad

    2009-09-01

    We describe the implementation of a prototype fully implicit method for solving three-dimensional quasi-steady state magnetic advection-diffusion problems. This method allows us to solve the magnetic advection diffusion equations in an Eulerian frame with a fixed, user-prescribed velocity field. We have verified the correctness of method and implementation on two standard verification problems, the Solberg-White magnetic shear problem and the Perry-Jones-White rotating cylinder problem.

  13. Travelling Waves and Numerical Approximations in a Reaction Advection Diffusion Equation with Nonlocal Delayed Effects

    Science.gov (United States)

    Liang, G.; Wu, J. A.

    2003-06-01

    In this paper, we consider the growth dynamics of a single-species population with two age classes and a fixed maturation period living in a spatial transport field. A Reaction Advection Diffusion Equation (RADE) model with time delay and nonlocal effect is derived if the mature death and diffusion rates are age independent. We discuss the existence of travelling waves for the delay model with three birth functions which appeared in the well-known Nicholson's blowflies equation, and we consider and analyze numerical solutions of the travelling wavefronts from the wave equations for the problems with nonlocal temporally delayed effects. In particular, we report our numerical observations about the change of the monotonicity and the possible occurrence of multihump waves. The stability of the travelling wavefront is numerically considered by computing the full time-dependent partial differential equations with nonlocal delay.

  14. Emergent structures in reaction-advection-diffusion systems on a sphere

    Science.gov (United States)

    Krause, Andrew L.; Burton, Abigail M.; Fadai, Nabil T.; Van Gorder, Robert A.

    2018-04-01

    We demonstrate unusual effects due to the addition of advection into a two-species reaction-diffusion system on the sphere. We find that advection introduces emergent behavior due to an interplay of the traditional Turing patterning mechanisms with the compact geometry of the sphere. Unidirectional advection within the Turing space of the reaction-diffusion system causes patterns to be generated at one point of the sphere, and transported to the antipodal point where they are destroyed. We illustrate these effects numerically and deduce conditions for Turing instabilities on local projections to understand the mechanisms behind these behaviors. We compare this behavior to planar advection which is shown to only transport patterns across the domain. Analogous transport results seem to hold for the sphere under azimuthal transport or away from the antipodal points in unidirectional flow regimes.

  15. Scale dependent controls of stream water temperatures - interaction of advective and diffusive energy fluxes

    Science.gov (United States)

    Schuetz, Tobias; Weiler, Markus

    2017-04-01

    Diurnal stream water temperature amplitudes (WTA) have a large impact on local ecohydrological conditions, e.g. aquatic habitat quality or biogeochemical cycling. Depending on discharge, streambed geomorphology, connectivity to the groundwater, hyporheic exchange flow and other local factors such as shading and climate conditions observable WTAs vary strongly from up- to downstream and can locally even exceed seasonal temperature variations. The main process which is responsible for the local expression of WTA is the energy balance which can be either dominated by advective energy fluxes (e. g. discharge and upwelling groundwater) or by diffusive energy fluxes (e. g. radiation, latent and sensible heat fluxes, heat exchange with the streambed). In recent years research has mainly focused on improving our knowledge how groundwater-surface water interaction, hyporheic exchange and shading processes influence locally observable WTA in smaller streams, while for larger streams or rivers WTA might even be non-observable throughout the year. Within this study we analyze the scaling behavior of advective and diffusive energy fluxes from small to large streams to better understand on which scales and under which conditions WTA might be dominated either by advective or diffusive energy fluxes and how groundwater - surface water interaction influences this relationship. For this purpose, we carried out a synthetic model study. Using published hydraulic geometry relations for different types of rivers, we apply a conceptual energy balance- and mixing model, which includes GW-SW interaction, discharges from 100 l/s up to 50 m3/s on length scales from 100 m up to 50 km. Simulated boundary conditions were constant discharges at the upstream boundary and constant and uniformly distributed exchange fluxes to the groundwater. Upstream water temperatures were 15 °C (WTA of 5 °C), while groundwater temperature was assumed to be cooler than the stream with 9°C. Net diffusive energy

  16. Solutes and cells - aspects of advection-diffusion-reaction phenomena in biochips

    DEFF Research Database (Denmark)

    Vedel, Søren

    2012-01-01

    -dependent advection and diffusion. Combining Aris’s method of statistical moments with Fourierexpansion in time and expansion of all spatial dependencies in diffusion eigenmodes, we obtain closed-form expressions for the dispersion that apply to any constant channel crosssection of any initial distribution...... driving frequency, possible order-of-magnitude increases of the dispersion in certain regimes, and apparent transient anomalous diffusion, which are all shown to naturally arise from the competing physical processes of solute diffusion, momentum diffusion and local velocity variations. In the second...

  17. An enriched finite element method to fractional advection-diffusion equation

    Science.gov (United States)

    Luan, Shengzhi; Lian, Yanping; Ying, Yuping; Tang, Shaoqiang; Wagner, Gregory J.; Liu, Wing Kam

    2017-08-01

    In this paper, an enriched finite element method with fractional basis [ 1,x^{α }] for spatial fractional partial differential equations is proposed to obtain more stable and accurate numerical solutions. For pure fractional diffusion equation without advection, the enriched Galerkin finite element method formulation is demonstrated to simulate the exact solution successfully without any numerical oscillation, which is advantageous compared to the traditional Galerkin finite element method with integer basis [ 1,x] . For fractional advection-diffusion equation, the oscillatory behavior becomes complex due to the introduction of the advection term which can be characterized by a fractional element Peclet number. For the purpose of addressing the more complex numerical oscillation, an enriched Petrov-Galerkin finite element method is developed by using a dimensionless fractional stabilization parameter, which is formulated through a minimization of the residual of the nodal solution. The effectiveness and accuracy of the enriched finite element method are demonstrated by a series of numerical examples of fractional diffusion equation and fractional advection-diffusion equation, including both one-dimensional and two-dimensional, steady-state and time-dependent cases.

  18. Digital simulation of an enrichment process for solutions by means of an advection-diffusion chamber

    International Nuclear Information System (INIS)

    Artucio, G.; Suarez, R.; Uruguay Catholic University)

    1995-01-01

    An ab-initio digital simulation of the space-time dynamics of the concentration field of a solute in an advection-diffusion chamber is done. Some questions related to the digital simulation of the concentration field using the analytical solution obtained in a previous paper are discussed

  19. Convergence Analysis of Domain Decomposition algorithms with full overlapping for the advection-diffusion problems

    OpenAIRE

    Le Tallec, Patrick; Tidriri, Moulay D.

    1994-01-01

    Projet MENUSIN; The aim of this paper is to study the convergence properties of a Time Marching Algorithm solving Advection-Diffusion problems on two domains using incompatible discretizations. The basic algorithm is first presented, and theoretical or numerical results illustrate its convergence properties. This study is based on spectral theory, a priori estimates and a Di-Giorgi-Nash maximum principle .

  20. Modeling of sedimentation and resuspension processes induced by intensive internal gravity waves in the coastal water systems with the use of the advection-diffusion equation for sediment concentration

    Science.gov (United States)

    Rouvinskaya, Ekaterina; Kurkin, Andrey; Kurkina, Oxana

    2017-04-01

    Intensive internal gravity waves influence bottom topography in the coastal zone. They induce substantial flows in the bottom layer that are essential for the formation of suspension and for the sediment transport. It is necessary to develop a mathematical model to predict the state of the seabed near the coastline to assess and ensure safety during the building and operation of the hydraulic engineering constructions. There are many models which are used to predict the impact of storm waves on the sediment transport processes. Such models for the impact of the tsunami waves are also actively developing. In recent years, the influence of intense internal waves on the sedimentation processes is also of a special interest. In this study we adapt one of such models, that is based on the advection-diffusion equation and allows to study processes of resuspension under the influence of internal gravity waves in the coastal zone, for solving the specific practical problems. During the numerical simulation precomputed velocity values are substituted in the advection - diffusion equation for sediment concentration at each time step and each node of the computational grid. Velocity values are obtained by the simulation of the internal waves' dynamics by using the IGW Research software package for numerical integration of fully nonlinear two-dimensional (vertical plane) system of equations of hydrodynamics of inviscid incompressible stratified fluid in the Boussinesq approximation bearing in mind the impact of barotropic tide. It is necessary to set the initial velocity and density distribution in the computational domain, bottom topography, as well as the value of the Coriolis parameter and, if necessary, the parameters of the tidal wave to carry out numerical calculations in the software package IGW Research. To initialize the background conditions of the numerical model we used data records obtained in the summer in the southern part of the shelf zone of Sakhalin Island

  1. A balancing domain decomposition method by constraints for advection-diffusion problems

    Energy Technology Data Exchange (ETDEWEB)

    Tu, Xuemin; Li, Jing

    2008-12-10

    The balancing domain decomposition methods by constraints are extended to solving nonsymmetric, positive definite linear systems resulting from the finite element discretization of advection-diffusion equations. A pre-conditioned GMRES iteration is used to solve a Schur complement system of equations for the subdomain interface variables. In the preconditioning step of each iteration, a partially sub-assembled finite element problem is solved. A convergence rate estimate for the GMRES iteration is established, under the condition that the diameters of subdomains are small enough. It is independent of the number of subdomains and grows only slowly with the subdomain problem size. Numerical experiments for several two-dimensional advection-diffusion problems illustrate the fast convergence of the proposed algorithm.

  2. Sensitivity analysis of numerical results of one- and two-dimensional advection-diffusion problems

    International Nuclear Information System (INIS)

    Motoyama, Yasunori; Tanaka, Nobuatsu

    2005-01-01

    Numerical simulation has been playing an increasingly important role in the fields of science and engineering. However, every numerical result contains errors such as modeling, truncation, and computing errors, and the magnitude of the errors that are quantitatively contained in the results is unknown. This situation causes a large design margin in designing by analyses and prevents further cost reduction by optimizing design. To overcome this situation, we developed a new method to numerically analyze the quantitative error of a numerical solution by using the sensitivity analysis method and modified equation approach. If a reference case of typical parameters is calculated once by this method, then no additional calculation is required to estimate the results of other numerical parameters such as those of parameters with higher resolutions. Furthermore, we can predict the exact solution from the sensitivity analysis results and can quantitatively evaluate the error of numerical solutions. Since the method incorporates the features of the conventional sensitivity analysis method, it can evaluate the effect of the modeling error as well as the truncation error. In this study, we confirm the effectiveness of the method through some numerical benchmark problems of one- and two-dimensional advection-diffusion problems. (author)

  3. Modelling the observed vertical transport of {sup 7}Be in specific soils with advection dispersion model

    Energy Technology Data Exchange (ETDEWEB)

    Torres Astorga, Romina; Velasco, Hugo; Valladares, Diego L.; Lohaiza, Flavia; Ayub, Jimena Juri; Rizzotto, Marcos [Grupo de Estudios Ambientales. Instituto de Matematica Aplicada San Luis - Universidad Nacional de San Luis - CONICET, San Luis (Argentina)

    2014-07-01

    {sup 7}Be is a short-lived environmental radionuclide, produced in the upper atmosphere by spallation of nitrogen and oxygen by cosmic rays. After of the production by the nuclear reaction, {sup 7}Be diffuses through the atmosphere until it attaches to atmospheric aerosols. Subsequently, it is deposited on the earth surface mainly as wet fallout. The main physical processes which transport {sup 7}Be in soil are diffusion and advection by water. Migration parameters and measurements confirm that sorption is the main physical process, which confines {sup 7}Be concentration to soil surface. The literature data show that in soils, {sup 7}Be is concentrated near the surface (0-2 cm) as it is adsorbed onto clay minerals after its deposition on the soil surface and does not penetrate deeper into soils due to its short half-life. The maximum mass activity density of {sup 7}Be is found at the point of input of the radionuclide, i.e. at the surface of the soil column, showing a exponential distribution profile typical of a purely diffusive transport. Many studies applying the advection dispersion models have been reported in the literature in order to modelling the transport of {sup 137}Cs in soils. On them, the models are used to achieve information of the mechanisms that govern the transport, i. e. the model is used to explain the soil profile of radionuclide. The effective dispersion coefficient and the apparent advection velocity of radionuclide in soil are also obtained by fitting the analytical solution of the model equation to measured depth distributions of the radionuclide. In this work, the advective dispersive transport model with linear sorption is used to analyze the vertical migration process of {sup 7}Be in soils of undisturbed or reference sites. The deposition history is approximated by pulse-like input functions and time dependent analytical solution of equation model is obtained. The values of dispersion coefficient and apparent advection velocity obtained

  4. Terrestrial Fe-oxide Concretions and Mars Blueberries: Comparisons of Similar Advective and Diffusive Chemical Infiltration Reaction Mechanisms

    Science.gov (United States)

    Park, A. J.; Chan, M. A.

    2006-12-01

    Abundant iron oxide concretions occurring in Navajo Sandstone of southern Utah and those discovered at Meridiani Planum, Mars share many common observable physical traits such as their spheriodal shapes, occurrence, and distribution patterns in sediments. Terrestrial concretions are products of interaction between oxygen-rich aquifer water and basin-derived reducing (iron-rich) water. Water-rock interaction simulations show that diffusion of oxygen and iron supplied by slow-moving water is a reasonable mechanism for producing observed concretion patterns. In short, southern Utah iron oxide concretions are results of Liesegang-type diffusive infiltration reactions in sediments. We propose that the formation of blueberry hematite concretions in Mars sediments followed a similar diagenetic mechanism where iron was derived from the alteration of volcanic substrate and oxygen was provided by the early Martian atmosphere. Although the terrestrial analog differs in the original host rock composition, both the terrestrial and Mars iron-oxide precipitation mechanisms utilize iron and oxygen interactions in sedimentary host rock with diffusive infiltration of solutes from two opposite sources. For the terrestrial model, slow advection of iron-rich water is an important factor that allowed pervasive and in places massive precipitation of iron-oxide concretions. In Mars, evaporative flux of water at the top of the sediment column may have produced a slow advective mass-transfer mechanism that provided a steady source and the right quantity of iron. The similarities of the terrestrial and Martian systems are demonstrated using a water-rock interaction simulator Sym.8, initially in one-dimensional systems. Boundary conditions such as oxygen content of water, partial pressure of oxygen, and supply rate of iron were varied. The results demonstrate the importance of slow advection of water and diffusive processes for producing diagenetic iron oxide concretions.

  5. Influence of the history force on inertial particle advection: gravitational effects and horizontal diffusion.

    Science.gov (United States)

    Guseva, Ksenia; Feudel, Ulrike; Tél, Tamás

    2013-10-01

    We analyze the effect of the Basset history force on the sedimentation or rising of inertial particles in a two-dimensional convection flow. When memory effects are neglected, the system exhibits rich dynamics, including periodic, quasiperiodic, and chaotic attractors. Here we show that when the full advection dynamics is considered, including the history force, both the nature and the number of attractors change, and a fractalization of their basins of attraction appears. In particular, we show that the history force significantly weakens the horizontal diffusion and changes the speed of sedimentation or rising. The influence of the history force is dependent on the size of the advected particles, being stronger for larger particles.

  6. Asymptotic analysis of reaction-diffusion-advection problems: Fronts with periodic motion and blow-up

    Science.gov (United States)

    Nefedov, Nikolay

    2017-02-01

    This is an extended variant of the paper presented at MURPHYS-HSFS 2016 conference in Barcelona. We discuss further development of the asymptotic method of differential inequalities to investigate existence and stability of sharp internal layers (fronts) for nonlinear singularly perturbed periodic parabolic problems and initial boundary value problems with blow-up of fronts for reaction-diffusion-advection equations. In particular, we consider periodic solutions with internal layer in the case of balanced reaction. For the initial boundary value problems we prove the existence of fronts and give their asymptotic approximation including the new case of blowing-up fronts. This case we illustrate by the generalised Burgers equation.

  7. Preconditioned iterative methods for space-time fractional advection-diffusion equations

    Science.gov (United States)

    Zhao, Zhi; Jin, Xiao-Qing; Lin, Matthew M.

    2016-08-01

    In this paper, we propose practical numerical methods for solving a class of initial-boundary value problems of space-time fractional advection-diffusion equations. First, we propose an implicit method based on two-sided Grünwald formulae and discuss its stability and consistency. Then, we develop the preconditioned generalized minimal residual (preconditioned GMRES) method and preconditioned conjugate gradient normal residual (preconditioned CGNR) method with easily constructed preconditioners. Importantly, because resulting systems are Toeplitz-like, fast Fourier transform can be applied to significantly reduce the computational cost. We perform numerical experiments to demonstrate the efficiency of our preconditioners, even in cases with variable coefficients.

  8. Space-Time Fractional Diffusion-Advection Equation with Caputo Derivative

    Directory of Open Access Journals (Sweden)

    José Francisco Gómez Aguilar

    2014-01-01

    Full Text Available An alternative construction for the space-time fractional diffusion-advection equation for the sedimentation phenomena is presented. The order of the derivative is considered as 0<β, γ≤1 for the space and time domain, respectively. The fractional derivative of Caputo type is considered. In the spatial case we obtain the fractional solution for the underdamped, undamped, and overdamped case. In the temporal case we show that the concentration has amplitude which exhibits an algebraic decay at asymptotically large times and also shows numerical simulations where both derivatives are taken in simultaneous form. In order that the equation preserves the physical units of the system two auxiliary parameters σx and σt are introduced characterizing the existence of fractional space and time components, respectively. A physical relation between these parameters is reported and the solutions in space-time are given in terms of the Mittag-Leffler function depending on the parameters β and γ. The generalization of the fractional diffusion-advection equation in space-time exhibits anomalous behavior.

  9. Multiscale numerical methods for passive advection-diffusion in incompressible turbulent flow fields

    Science.gov (United States)

    Lee, Yoonsang; Engquist, Bjorn

    2016-07-01

    We propose a seamless multiscale method which approximates the macroscopic behavior of the passive advection-diffusion equations with steady incompressible velocity fields with multi-spatial scales. The method uses decompositions of the velocity fields in the Fourier space, which are similar to the decomposition in large eddy simulations. It also uses a hierarchy of local domains with different resolutions as in multigrid methods. The effective diffusivity from finer scale is used for the next coarser level computation and this process is repeated up to the coarsest scale of interest. The grids are only in local domains whose sizes decrease depending on the resolution level so that the overall computational complexity increases linearly as the number of different resolution grids increases. The method captures interactions between finer and coarser scales but has to sacrifice some of interactions between different scales. The proposed method is numerically tested with 2D examples including a successful approximation to a continuous spectrum flow.

  10. Advection and diffusion in random media implications for sea surface temperature anomalies

    CERN Document Server

    Piterbarg, Leonid I

    1997-01-01

    The book presents the foundations of the theory of turbulent transport within the context of stochastic partial differential equations. It serves to establish a firm connection between rigorous and non-rigorous results concerning turbulent diffusion. Mathematically all of the issues addressed in this book are concentrated around a single linear equation: stochastic advection-diffusion (transport) equation. There is no attempt made to derive universal statistics for turbulent flow. Instead emphasis is placed on a statistical description of a passive scalar (tracer) under given velocity statistics. An application concerning transport of sea surface temperature anomalies reconciles the developed theory and a highly practical issue of modern physical oceanography by using the newly designed inversion techniques which take advantage of powerful maximum likelihood and autoregressive estimators. Audience: Graduate students and researchers in mathematics, fluid dynamics, and physical oceanography.

  11. Temporal signatures of advective versus diffusive radon transport at a geothermal zone in Central Nepal.

    Science.gov (United States)

    Richon, Patrick; Perrier, Frédéric; Koirala, Bharat Prasad; Girault, Frédéric; Bhattarai, Mukunda; Sapkota, Soma Nath

    2011-02-01

    Temporal variation of radon-222 concentration was studied at the Syabru-Bensi hot springs, located on the Main Central Thrust zone in Central Nepal. This site is characterized by several carbon dioxide discharges having maximum fluxes larger than 10 kg m(-2) d(-1). Radon concentration was monitored with autonomous Barasol™ probes between January 2008 and November 2009 in two small natural cavities with high CO(2) concentration and at six locations in the soil: four points having a high flux, and two background reference points. At the reference points, dominated by radon diffusion, radon concentration was stable from January to May, with mean values of 22 ± 6.9 and 37 ± 5.5 kBq m(-3), but was affected by a large increase, of about a factor of 2 and 1.6, respectively, during the monsoon season from June to September. At the points dominated by CO(2) advection, by contrast, radon concentration showed higher mean values 39.0 ± 2.6 to 78 ± 1.4 kBq m(-3), remarkably stable throughout the year with small long-term variation, including a possible modulation of period around 6 months. A significant difference between the diffusion dominated reference points and the advection-dominated points also emerged when studying the diurnal S(1) and semi-diurnal S(2) periodic components. At the advection-dominated points, radon concentration did not exhibit S(1) or S(2) components. At the reference points, however, the S(2) component, associated with barometric tide, could be identified during the dry season, but only when the probe was installed at shallow depth. The S(1) component, associated with thermal and possibly barometric diurnal forcing, was systematically observed, especially during monsoon season. The remarkable short-term and long-term temporal stability of the radon concentration at the advection-dominated points, which suggests a strong pressure source at depth, may be an important asset to detect possible temporal variations associated with the

  12. Milstein Approximation for Advection-Diffusion Equations Driven by Multiplicative Noncontinuous Martingale Noises

    Energy Technology Data Exchange (ETDEWEB)

    Barth, Andrea, E-mail: andrea.barth@sam.math.ethz.ch; Lang, Annika, E-mail: annika.lang@sam.math.ethz.ch [ETH, Seminar fuer Angewandte Mathematik (Switzerland)

    2012-12-15

    In this paper, the strong approximation of a stochastic partial differential equation, whose differential operator is of advection-diffusion type and which is driven by a multiplicative, infinite dimensional, cadlag, square integrable martingale, is presented. A finite dimensional projection of the infinite dimensional equation, for example a Galerkin projection, with nonequidistant time stepping is used. Error estimates for the discretized equation are derived in L{sup 2} and almost sure senses. Besides space and time discretizations, noise approximations are also provided, where the Milstein double stochastic integral is approximated in such a way that the overall complexity is not increased compared to an Euler-Maruyama approximation. Finally, simulations complete the paper.

  13. Multiscale analysis of collective motion and decision-making in swarms: an advection-diffusion equation with memory approach.

    Science.gov (United States)

    Raghib, M; Levin, S A; Kevrekidis, I G

    2010-06-07

    We propose a (time) multiscale method for the coarse-grained analysis of collective motion and decision-making in self-propelled particle models of swarms comprising a mixture of 'naïve' and 'informed' individuals. The method is based on projecting the particle configuration onto a single 'meta-particle' that consists of the elongation of the flock together with the mean group velocity and position. We find that the collective states can be associated with the transient and asymptotic transport properties of the random walk followed by the meta-particle, which we assume follows a continuous time random walk (CTRW). These properties can be accurately predicted at the macroscopic level by an advection-diffusion equation with memory (ADEM) whose parameters are obtained from a mean group velocity time series obtained from a single simulation run of the individual-based model. Copyright (c) 2010 Elsevier Ltd. All rights reserved.

  14. A numerical investigation of multi space reduced basis preconditioners for parametrized elliptic advection-diffusion equations

    Directory of Open Access Journals (Sweden)

    Santo Niccolò Dal

    2017-12-01

    Full Text Available We analyze the numerical performance of a preconditioning technique recently proposed in [1] for the efficient solution of parametrized linear systems arising from the finite element (FE discretization of parameterdependent elliptic partial differential equations (PDEs. In order to exploit the parametric dependence of the PDE, the proposed preconditioner takes advantage of the reduced basis (RB method within the preconditioned iterative solver employed to solve the linear system, and combines a RB solver, playing the role of coarse component, with a traditional fine grid (such as Additive Schwarz or block Jacobi preconditioner. A sequence of RB spaces is required to handle the approximation of the error-residual equation at each step of the iterative method at hand, whence the name of Multi Space Reduced Basis (MSRB method. In this paper, a numerical investigation of the proposed technique is carried on in the case of a Richardson iterative method, and then extended to the flexible GMRES method, in order to solve parameterized advection-diffusion problems. Particular attention is payed to the impact of anisotropic diffusion coefficients and (possibly dominant transport terms on the proposed preconditioner, by carrying out detailed comparisons with the current state of the art algebraic multigrid preconditioners.

  15. A new finite element formulation for CFD:VIII. The Galerkin/least-squares method for advective-diffusive equations

    International Nuclear Information System (INIS)

    Hughes, T.J.R.; Hulbert, G.M.; Franca, L.P.

    1988-10-01

    Galerkin/least-squares finite element methods are presented for advective-diffusive equations. Galerkin/least-squares represents a conceptual simplification of SUPG, and is in fact applicable to a wide variety of other problem types. A convergence analysis and error estimates are presented. (author) [pt

  16. Advective transport in heterogeneous aquifers: Are proxy models predictive?

    Science.gov (United States)

    Fiori, A.; Zarlenga, A.; Gotovac, H.; Jankovic, I.; Volpi, E.; Cvetkovic, V.; Dagan, G.

    2015-12-01

    We examine the prediction capability of two approximate models (Multi-Rate Mass Transfer (MRMT) and Continuous Time Random Walk (CTRW)) of non-Fickian transport, by comparison with accurate 2-D and 3-D numerical simulations. Both nonlocal in time approaches circumvent the need to solve the flow and transport equations by using proxy models to advection, providing the breakthrough curves (BTC) at control planes at any x, depending on a vector of five unknown parameters. Although underlain by different mechanisms, the two models have an identical structure in the Laplace Transform domain and have the Markovian property of independent transitions. We show that also the numerical BTCs enjoy the Markovian property. Following the procedure recommended in the literature, along a practitioner perspective, we first calibrate the parameters values by a best fit with the numerical BTC at a control plane at x1, close to the injection plane, and subsequently use it for prediction at further control planes for a few values of σY2≤8. Due to a similar structure and Markovian property, the two methods perform equally well in matching the numerical BTC. The identified parameters are generally not unique, making their identification somewhat arbitrary. The inverse Gaussian model and the recently developed Multi-Indicator Model (MIM), which does not require any fitting as it relates the BTC to the permeability structure, are also discussed. The application of the proxy models for prediction requires carrying out transport field tests of large plumes for a long duration.

  17. Anomalous Advection-Dispersion Equations within General Fractional-Order Derivatives: Models and Series Solutions

    Directory of Open Access Journals (Sweden)

    Xin Liang

    2018-01-01

    Full Text Available In this paper, an anomalous advection-dispersion model involving a new general Liouville–Caputo fractional-order derivative is addressed for the first time. The series solutions of the general fractional advection-dispersion equations are obtained with the aid of the Laplace transform. The results are given to demonstrate the efficiency of the proposed formulations to describe the anomalous advection dispersion processes.

  18. Advective mixing in a nondivergent barotropic hurricane model

    Directory of Open Access Journals (Sweden)

    B. Rutherford

    2010-01-01

    Full Text Available This paper studies Lagrangian mixing in a two-dimensional barotropic model for hurricane-like vortices. Since such flows show high shearing in the radial direction, particle separation across shear-lines is diagnosed through a Lagrangian field, referred to as R-field, that measures trajectory separation orthogonal to the Lagrangian velocity. The shear-lines are identified with the level-contours of another Lagrangian field, referred to as S-field, that measures the average shear-strength along a trajectory. Other fields used for model diagnostics are the Lagrangian field of finite-time Lyapunov exponents (FTLE-field, the Eulerian Q-field, and the angular velocity field. Because of the high shearing, the FTLE-field is not a suitable indicator for advective mixing, and in particular does not exhibit ridges marking the location of finite-time stable and unstable manifolds. The FTLE-field is similar in structure to the radial derivative of the angular velocity. In contrast, persisting ridges and valleys can be clearly recognized in the R-field, and their propagation speed indicates that transport across shear-lines is caused by Rossby waves. A radial mixing rate derived from the R-field gives a time-dependent measure of flux across the shear-lines. On the other hand, a measured mixing rate across the shear-lines, which counts trajectory crossings, confirms the results from the R-field mixing rate, and shows high mixing in the eyewall region after the formation of a polygonal eyewall, which continues until the vortex breaks down. The location of the R-field ridges elucidates the role of radial mixing for the interaction and breakdown of the mesovortices shown by the model.

  19. Advective and diffusive contributions to reactive gas transport during pyrite oxidation in the unsaturated zone

    NARCIS (Netherlands)

    Binning, P. J.; POSTMA, D; Russell, T. F.; Wesselingh, J. A.; Boulin, P. F.

    2007-01-01

    [1] Pyrite oxidation in unsaturated mine waste rock dumps and soils is limited by the supply of oxygen from the atmosphere. In models, oxygen transport through the subsurface is often assumed to be driven by diffusion. However, oxygen comprises 23.2% by mass of dry air, and when oxygen is consumed

  20. Advective and diffusive contributions to reactive gas transport during pyrite oxidation in the unsaturated zone

    DEFF Research Database (Denmark)

    Binning, Philip John; Postma, Diederik Jan; Russel, T.F.

    2007-01-01

    Pyrite oxidation in unsaturated mine waste rock dumps and soils is limited by the supply of oxygen from the atmosphere. In models, oxygen transport through the subsurface is often assumed to be driven by diffusion. However, oxygen comprises 23.2% by mass of dry air, and when oxygen is consumed...

  1. Solution of the advection-diffusion equation for a nonhomogeneous and nonstationary Planetary Boundary Layer by GILTT (Generalized Integral Laplace Transform Technique)

    International Nuclear Information System (INIS)

    Mello, Kelen Berra de

    2005-02-01

    In this work is shown the solution of the advection-diffusion equation to simulate a pollutant dispersion in the Planetary Boundary Layer. The solution is obtained through of the GILTT (Generalized Integral Laplace Transform Technique) analytic method and of the numerical inversion Gauss Quadrature. The validity of the solution is proved using concentration obtained from the model with concentration obtained for Copenhagen experiment. In this comparison was utilized potential and logarithmic wind profile and eddy diffusivity derived by Degrazia et al (1997) [17] and (2002) [19]. The best results was using the potential wind profile and the eddy diffusivity derived by Degrazia et al (1997). The vertical velocity influence is shown in the plume behavior of the pollutant concentration. Moreover, the vertical and longitudinal velocity provided by Large Eddy Simulation (LES) was stood in the model to simulate the turbulent boundary layer more realistic, the result was satisfactory when compared with contained in the literature. (author)

  2. Quantifying the roles of random motility and directed motility using advection-diffusion theory for a 3T3 fibroblast cell migration assay stimulated with an electric field.

    Science.gov (United States)

    Simpson, Matthew J; Lo, Kai-Yin; Sun, Yung-Shin

    2017-03-17

    Directed cell migration can be driven by a range of external stimuli, such as spatial gradients of: chemical signals (chemotaxis); adhesion sites (haptotaxis); or temperature (thermotaxis). Continuum models of cell migration typically include a diffusion term to capture the undirected component of cell motility and an advection term to capture the directed component of cell motility. However, there is no consensus in the literature about the form that the advection term takes. Some theoretical studies suggest that the advection term ought to include receptor saturation effects. However, others adopt a much simpler constant coefficient. One of the limitations of including receptor saturation effects is that it introduces several additional unknown parameters into the model. Therefore, a relevant research question is to investigate whether directed cell migration is best described by a simple constant tactic coefficient or a more complicated model incorporating saturation effects. We study directed cell migration using an experimental device in which the directed component of the cell motility is driven by a spatial gradient of electric potential, which is known as electrotaxis. The electric field (EF) is proportional to the spatial gradient of the electric potential. The spatial variation of electric potential across the experimental device varies in such a way that there are several subregions on the device in which the EF takes on different values that are approximately constant within those subregions. We use cell trajectory data to quantify the motion of 3T3 fibroblast cells at different locations on the device to examine how different values of the EF influences cell motility. The undirected (random) motility of the cells is quantified in terms of the cell diffusivity, D, and the directed motility is quantified in terms of a cell drift velocity, v. Estimates D and v are obtained under a range of four different EF conditions, which correspond to normal

  3. Prediction of the moments in advection-diffusion lattice Boltzmann method. I. Truncation dispersion, skewness, and kurtosis

    Science.gov (United States)

    Ginzburg, Irina

    2017-01-01

    The effect of the heterogeneity in the soil structure or the nonuniformity of the velocity field on the modeled resident time distribution (RTD) and breakthrough curves is quantified by their moments. While the first moment provides the effective velocity, the second moment is related to the longitudinal dispersion coefficient (kT) in the developed Taylor regime; the third and fourth moments are characterized by their normalized values skewness (Sk) and kurtosis (Ku), respectively. The purpose of this investigation is to examine the role of the truncation corrections of the numerical scheme in kT, Sk, and Ku because of their interference with the second moment, in the form of the numerical dispersion, and in the higher-order moments, by their definition. Our symbolic procedure is based on the recently proposed extended method of moments (EMM). Originally, the EMM restores any-order physical moments of the RTD or averaged distributions assuming that the solute concentration obeys the advection-diffusion equation in multidimensional steady-state velocity field, in streamwise-periodic heterogeneous structure. In our work, the EMM is generalized to the fourth-order-accurate apparent mass-conservation equation in two- and three-dimensional duct flows. The method looks for the solution of the transport equation as the product of a long harmonic wave and a spatially periodic oscillating component; the moments of the given numerical scheme are derived from a chain of the steady-state fourth-order equations at a single cell. This mathematical technique is exemplified for the truncation terms of the two-relaxation-time lattice Boltzmann scheme, using plug and parabolic flow in straight channel and cylindrical capillary with the d2Q9 and d3Q15 discrete velocity sets as simple but illustrative examples. The derived symbolic dependencies can be readily extended for advection by another, Newtonian or non-Newtonian, flow profile in any-shape open-tabular conduits. It is

  4. A meshless method for solving two-dimensional variable-order time fractional advection-diffusion equation

    Science.gov (United States)

    Tayebi, A.; Shekari, Y.; Heydari, M. H.

    2017-07-01

    Several physical phenomena such as transformation of pollutants, energy, particles and many others can be described by the well-known convection-diffusion equation which is a combination of the diffusion and advection equations. In this paper, this equation is generalized with the concept of variable-order fractional derivatives. The generalized equation is called variable-order time fractional advection-diffusion equation (V-OTFA-DE). An accurate and robust meshless method based on the moving least squares (MLS) approximation and the finite difference scheme is proposed for its numerical solution on two-dimensional (2-D) arbitrary domains. In the time domain, the finite difference technique with a θ-weighted scheme and in the space domain, the MLS approximation are employed to obtain appropriate semi-discrete solutions. Since the newly developed method is a meshless approach, it does not require any background mesh structure to obtain semi-discrete solutions of the problem under consideration, and the numerical solutions are constructed entirely based on a set of scattered nodes. The proposed method is validated in solving three different examples including two benchmark problems and an applied problem of pollutant distribution in the atmosphere. In all such cases, the obtained results show that the proposed method is very accurate and robust. Moreover, a remarkable property so-called positive scheme for the proposed method is observed in solving concentration transport phenomena.

  5. On the importance of aqueous diffusion and electrostatic interactions in advection-dominated transport in saturated porous media

    DEFF Research Database (Denmark)

    Rolle, Massimo

    2015-01-01

    to multicomponent ionic dispersion: the dispersive fluxes of the different ions are cross-coupled due to the effects of Coulombic interactions. Such effects are illustrated in flow-through experiments in saturated porous media. Simple strong electrolytes were selected as tracers and their transport was studied...... advection-dominated flow through conditions. When the solutes are charged species, besides the magnitude of their aqueous diffusion coefficients also their electrostatic interactions play a significant role in the displacement of the different species. Under flow-through conditions this leads......-coupling of dispersive fluxes due to the Coulombic interactions between the charged species....

  6. Application of the Space-Time Conservation Element and Solution Element Method to One-Dimensional Advection-Diffusion Problems

    Science.gov (United States)

    Wang, Xiao-Yen; Chow, Chuen-Yen; Chang, Sin-Chung

    1999-01-01

    Test problems are used to examine the performance of several one-dimensional numerical schemes based on the space-time conservation and solution element (CE/SE) method. Investigated in this paper are the CE/SE schemes constructed previously for solving the linear unsteady advection-diffusion equation and the schemes derived here for solving the nonlinear viscous and inviscid Burgers equations. In comparison with the numerical solutions obtained using several traditional finite-difference schemes with similar accuracy, the CE/SE solutions display much lower numerical dissipation and dispersion errors.

  7. Modelling transport in media with heterogeneous advection properties and mass transfer with a Continuous Time Random Walk approach

    Science.gov (United States)

    Comolli, Alessandro; Moussey, Charlie; Dentz, Marco

    2016-04-01

    Transport processes in groundwater systems are strongly affected by the presence of heterogeneity. The heterogeneity leads to non-Fickian features, that manifest themselves in the heavy-tailed breakthrough curves, as well as in the non-linear growth of the mean squared displacement and in the non-Gaussian plumes of solute particles. The causes of non-Fickian transport can be the heterogeneity in the flow fields and the processes of mass exchange between mobile and immobile phases, such as sorption/desorption reactions and diffusive mass transfer. Here, we present a Continuous Time Random Walk (CTRW) model that describes the transport of solutes in d-dimensional systems by taking into account both heterogeneous advection and mobile-immobile mass transfer. In order to account for these processes in the CTRW, the heterogeneities are mapped onto a distribution of transition times, which can be decomposed into advective transition times and trapping times, the latter being treated as a compound Poisson process. While advective transition times are related to the Eulerian flow velocities and, thus, to the conductivity distribution, trapping times depend on the sorption/desorption time scale, in case of reactive problems, or on the distribution of diffusion times in the immobile zones. Since the trapping time scale is typically much larger than the advective time scale, we observe the existence of two temporal regimes. The pre-asymptotic regime is defined by a characteristic time scale at which the properties of transport are fully determined by the heterogeneity of the advective field. On the other hand, in the asymptotic regime both the heterogeneity and the mass exchange processes play a role in conditioning the behaviour of transport. We consider different scenarios to discuss the relative importance of the advective heterogeneity and the mass transfer for the occurrence of non-Fickian transport. For each case we calculate analytically the scalings of the breakthrough

  8. Correcting transport errors during advection of aerosol and cloud moment sequences in eulerian models

    Energy Technology Data Exchange (ETDEWEB)

    McGraw R.

    2012-03-01

    Moment methods are finding increasing usage for simulations of particle population balance in box models and in more complex flows including two-phase flows. These highly efficient methods have nevertheless had little impact to date for multi-moment representation of aerosols and clouds in atmospheric models. There are evidently two reasons for this: First, atmospheric models, especially if the goal is to simulate climate, tend to be extremely complex and take many man-years to develop. Thus there is considerable inertia to the implementation of novel approaches. Second, and more fundamental, the nonlinear transport algorithms designed to reduce numerical diffusion during advection of various species (tracers) from cell to cell, in the typically coarse grid arrays of these models, can and occasionally do fail to preserve correlations between the moments. Other correlated tracers such as isotopic abundances, composition of aerosol mixtures, hydrometeor phase, etc., are subject to this same fate. In the case of moments, this loss of correlation can and occasionally does give rise to unphysical moment sets. When this happens the simulation can come to a halt. Following a brief description and review of moment methods, the goal of this paper is to present two new approaches that both test moment sequences for validity and correct them when they fail. The new approaches work on individual grid cells without requiring stored information from previous time-steps or neighboring cells.

  9. Application of the space-time conservation element and solution element method to two-dimensional advection-diffusion problems

    Science.gov (United States)

    Wang, Xiao-Yen; Chow, Chuen-Yen; Chang, Sin-Chung

    1995-01-01

    The existing 2-D alpha-mu scheme and alpha-epsilon scheme based on the method of space-time conservation element and solution element, which were constructed for solving the linear 2-D unsteady advection-diffusion equation and unsteady advection equation, respectively, are tested. Also, the alpha-epsilon scheme is modified to become the V-E scheme for solving the nonlinear 2-D inviscid Burgers equation. Numerical solutions of six test problems are presented in comparison with their exact solutions or numerical solutions obtained by traditional finite-difference or finite-element methods. It is demonstrated that the 2-D alpha-mu, alpha-epsilon, and nu-epsilon schemes can be used to obtain numerical results which are more accurate than those based on some of the traditional methods but without using any artificial tuning in the computation. Similar to the previous 1-D test problems, the high accuracy and simplicity features of the space-time conservation element and solution element method have been revealed again in the present 2-D test results.

  10. Far-from-equilibrium sheared colloidal liquids: Disentangling relaxation, advection, and shear-induced diffusion

    KAUST Repository

    Lin, Neil Y. C.

    2013-12-01

    Using high-speed confocal microscopy, we measure the particle positions in a colloidal suspension under large-amplitude oscillatory shear. Using the particle positions, we quantify the in situ anisotropy of the pair-correlation function, a measure of the Brownian stress. From these data we find two distinct types of responses as the system crosses over from equilibrium to far-from-equilibrium states. The first is a nonlinear amplitude saturation that arises from shear-induced advection, while the second is a linear frequency saturation due to competition between suspension relaxation and shear rate. In spite of their different underlying mechanisms, we show that all the data can be scaled onto a master curve that spans the equilibrium and far-from-equilibrium regimes, linking small-amplitude oscillatory to continuous shear. This observation illustrates a colloidal analog of the Cox-Merz rule and its microscopic underpinning. Brownian dynamics simulations show that interparticle interactions are sufficient for generating both experimentally observed saturations. © 2013 American Physical Society.

  11. Advective and diapycnal diffusive oceanic flux in Tenerife - La Gomera Channel

    Science.gov (United States)

    Marrero-Díaz, A.; Rodriguez-Santana, A.; Hernández-Arencibia, M.; Machín, F.; García-Weil, L.

    2012-04-01

    During the year 2008, using the commercial passenger ship Volcán de Tauce of the Naviera Armas company several months, it was possible to obtain vertical profiles of temperature from expandable bathythermograph probes in eight stations across the Tenerife - La Gomera channel. With these data of temperature we have been estimated vertical sections of potential density and geostrophic transport with high spatial and temporal resolution (5 nm between stations, and one- two months between cruises). The seasonal variability obtained for the geostrophic transport in this channel shows important differences with others Canary Islands channels. From potential density and geostrophic velocity data we estimated the vertical diffusion coefficients and diapycnal diffusive fluxes, using a parameterization that depends of Richardson gradient number. In the center of the channel and close to La Gomera Island, we found higher values for these diffusive fluxes. Convergence and divergence of these fluxes requires further study so that we can draw conclusions about its impact on the distribution of nutrients in the study area and its impact in marine ecosystems. This work is being used in research projects TRAMIC and PROMECA.

  12. Modelling of Innovation Diffusion

    Directory of Open Access Journals (Sweden)

    Arkadiusz Kijek

    2010-01-01

    Full Text Available Since the publication of the Bass model in 1969, research on the modelling of the diffusion of innovation resulted in a vast body of scientific literature consisting of articles, books, and studies of real-world applications of this model. The main objective of the diffusion model is to describe a pattern of spread of innovation among potential adopters in terms of a mathematical function of time. This paper assesses the state-of-the-art in mathematical models of innovation diffusion and procedures for estimating their parameters. Moreover, theoretical issues related to the models presented are supplemented with empirical research. The purpose of the research is to explore the extent to which the diffusion of broadband Internet users in 29 OECD countries can be adequately described by three diffusion models, i.e. the Bass model, logistic model and dynamic model. The results of this research are ambiguous and do not indicate which model best describes the diffusion pattern of broadband Internet users but in terms of the results presented, in most cases the dynamic model is inappropriate for describing the diffusion pattern. Issues related to the further development of innovation diffusion models are discussed and some recommendations are given. (original abstract

  13. An Evaluation of an Advection Fog Prediction Model.

    Science.gov (United States)

    1984-06-06

    the area of the atmospheric boundary layer, Estoque 1 1 ’ 12 simulated diurnal temperature va- riations, while Fisher and Caplan 13 predicted the...winds, J. Atmos. Sci. 21:622-633. 11. Estoque , M.A. (1959) A preliminary report on a boundary layer numerical ex- periment, GRD Research Notes, AFCRC...ARDC) 20:1-29. 12. Estoque , M.A. (1963) A numerical model of the atmospheric boundary layer, J. Geophys. Res. 68:1103-1113. 13. Fisher, E.L., and

  14. Numerical and analytical approaches to an advection-diffusion problem at small Reynolds number and large Péclet number

    Science.gov (United States)

    Fuller, Nathaniel J.; Licata, Nicholas A.

    2018-05-01

    Obtaining a detailed understanding of the physical interactions between a cell and its environment often requires information about the flow of fluid surrounding the cell. Cells must be able to effectively absorb and discard material in order to survive. Strategies for nutrient acquisition and toxin disposal, which have been evolutionarily selected for their efficacy, should reflect knowledge of the physics underlying this mass transport problem. Motivated by these considerations, in this paper we discuss the results from an undergraduate research project on the advection-diffusion equation at small Reynolds number and large Péclet number. In particular, we consider the problem of mass transport for a Stokesian spherical swimmer. We approach the problem numerically and analytically through a rescaling of the concentration boundary layer. A biophysically motivated first-passage problem for the absorption of material by the swimming cell demonstrates quantitative agreement between the numerical and analytical approaches. We conclude by discussing the connections between our results and the design of smart toxin disposal systems.

  15. Shell model for time-correlated random advection of passive scalars

    DEFF Research Database (Denmark)

    Andersen, Ken Haste; Muratore-Ginanneschi, P.

    1999-01-01

    We study a minimal shell model for the advection of a passive scalar by a Gaussian time-correlated velocity field. The anomalous scaling properties of the white noise limit are studied analytically. The effect of the time correlations are investigated using perturbation theory around the white...... noise limit and nonperturbatively by numerical integration. The time correlation of the velocity field is seen to enhance the intermittency of the passive scalar. [S1063-651X(99)07711-9]....

  16. correction to numerica advection of moments of the particle size distribution in eulerian model

    Science.gov (United States)

    Chang, L.; Schwartz, S.; McGraw, B.; Lewis, E.

    2007-12-01

    Quadrature method of moments(QMOM) offers a alternative more efficient than sectional methods and more accurate than modal methods. If QMOM is incorporated into eulerian model, invalid moments set are produced by nonlinear transport methods when valid moments are transported as seperate tracers. A non-negative least squares (NNLS) soultion eliminates the problem without requiring modification of the transport algorithm. The evaluation of NNLS for two representative advection schemes in one dimension was done for 10E4 test cases.

  17. A calibrated advection-aridity evaporation model requiring no humidity data

    Science.gov (United States)

    Crago, Richard D.; Qualls, Russell J.; Feller, Meghan

    2010-09-01

    A modified advection-aridity model was tested with 24 h averaged data from the First ISLSCP (International Satellite Land Surface Climatology Project) Field Experiment-87 and the Cooperative Atmospheric-Surface Exchange Study (CASES) -97 experiments. Two modifications were made. First, the need for humidity measurements in the "drying power" term of the equation was circumvented by assuming the daily average specific humidity for a 24 h day is equal to the specific humidity at the minimum temperature during the day. When compared to measured latent heat fluxes, this modification resulted in no deterioration in advection-aridity estimates compared to versions using measured humidity. A second modification followed previous researchers by formulating the drying power in the Penman equation using Monin-Obukhov similarity (MOS) theory. However, this version calibrated kB-1 (≡ln(zo/zov) by setting the Priestley-Taylor evapotranspiration rate equal (on average) to the Penman evapotranspiration on several moist days and solving for the value of kB-1 as the only unknown. The calibration involved no latent heat flux measurements. The results suggest that the advection-aridity model performs modestly better in the calibrated MOS version than with Penman's original wind function. Further investigation is recommended because MOS theory accounts for varying momentum roughness lengths, and the calibration was not done under ideal (well-watered or nearly saturated) conditions that deteriorated the results somewhat with the CASES data set.

  18. A third-order computational method for numerical fluxes to guarantee nonnegative difference coefficients for advection-diffusion equations in a semi-conservative form

    Science.gov (United States)

    Sakai, K.; Watabe, D.; Minamidani, T.; Zhang, G. S.

    2012-10-01

    According to Godunov theorem for numerical calculations of advection equations, there exist no higher-order schemes with constant positive difference coefficients in a family of polynomial schemes with an accuracy exceeding the first-order. We propose a third-order computational scheme for numerical fluxes to guarantee the non-negative difference coefficients of resulting finite difference equations for advection-diffusion equations in a semi-conservative form, in which there exist two kinds of numerical fluxes at a cell surface and these two fluxes are not always coincident in non-uniform velocity fields. The present scheme is optimized so as to minimize truncation errors for the numerical fluxes while fulfilling the positivity condition of the difference coefficients which are variable depending on the local Courant number and diffusion number. The feature of the present optimized scheme consists in keeping the third-order accuracy anywhere without any numerical flux limiter. We extend the present method into multi-dimensional equations. Numerical experiments for advection-diffusion equations showed nonoscillatory solutions.

  19. An advection-based model to increase the temporal resolution of PIV time series.

    Science.gov (United States)

    Scarano, Fulvio; Moore, Peter

    A numerical implementation of the advection equation is proposed to increase the temporal resolution of PIV time series. The method is based on the principle that velocity fluctuations are transported passively, similar to Taylor's hypothesis of frozen turbulence . In the present work, the advection model is extended to unsteady three-dimensional flows. The main objective of the method is that of lowering the requirement on the PIV repetition rate from the Eulerian frequency toward the Lagrangian one. The local trajectory of the fluid parcel is obtained by forward projection of the instantaneous velocity at the preceding time instant and backward projection from the subsequent time step. The trajectories are approximated by the instantaneous streamlines, which yields accurate results when the amplitude of velocity fluctuations is small with respect to the convective motion. The verification is performed with two experiments conducted at temporal resolutions significantly higher than that dictated by Nyquist criterion. The flow past the trailing edge of a NACA0012 airfoil closely approximates frozen turbulence , where the largest ratio between the Lagrangian and Eulerian temporal scales is expected. An order of magnitude reduction of the needed acquisition frequency is demonstrated by the velocity spectra of super-sampled series. The application to three-dimensional data is made with time-resolved tomographic PIV measurements of a transitional jet. Here, the 3D advection equation is implemented to estimate the fluid trajectories. The reduction in the minimum sampling rate by the use of super-sampling in this case is less, due to the fact that vortices occurring in the jet shear layer are not well approximated by sole advection at large time separation. Both cases reveal that the current requirements for time-resolved PIV experiments can be revised when information is poured from space to time . An additional favorable effect is observed by the analysis in the

  20. Prediction of the moments in advection-diffusion lattice Boltzmann method. II. Attenuation of the boundary layers via double-Λ bounce-back flux scheme

    Science.gov (United States)

    Ginzburg, Irina

    2017-01-01

    Impact of the unphysical tangential advective-diffusion constraint of the bounce-back (BB) reflection on the impermeable solid surface is examined for the first four moments of concentration. Despite the number of recent improvements for the Neumann condition in the lattice Boltzmann method-advection-diffusion equation, the BB rule remains the only known local mass-conserving no-flux condition suitable for staircase porous geometry. We examine the closure relation of the BB rule in straight channel and cylindrical capillary analytically, and show that it excites the Knudsen-type boundary layers in the nonequilibrium solution for full-weight equilibrium stencil. Although the d2Q5 and d3Q7 coordinate schemes are sufficient for the modeling of isotropic diffusion, the full-weight stencils are appealing for their advanced stability, isotropy, anisotropy and anti-numerical-diffusion ability. The boundary layers are not covered by the Chapman-Enskog expansion around the expected equilibrium, but they accommodate the Chapman-Enskog expansion in the bulk with the closure relation of the bounce-back rule. We show that the induced boundary layers introduce first-order errors in two primary transport properties, namely, mean velocity (first moment) and molecular diffusion coefficient (second moment). As a side effect, the Taylor-dispersion coefficient (second moment), skewness (third moment), and kurtosis (fourth moment) deviate from their physical values and predictions of the fourth-order Chapman-Enskog analysis, even though the kurtosis error in pure diffusion does not depend on grid resolution. In two- and three-dimensional grid-aligned channels and open-tubular conduits, the errors of velocity and diffusion are proportional to the diagonal weight values of the corresponding equilibrium terms. The d2Q5 and d3Q7 schemes do not suffer from this deficiency in grid-aligned geometries but they cannot avoid it if the boundaries are not parallel to the coordinate lines. In order

  1. An upscaled approach for transport in media with extended tailing due to back-diffusion using analytical and numerical solutions of the advection dispersion equation.

    Science.gov (United States)

    Parker, Jack C; Kim, Ungtae

    2015-11-01

    The mono-continuum advection-dispersion equation (mADE) is commonly regarded as unsuitable for application to media that exhibit rapid breakthrough and extended tailing associated with diffusion between high and low permeability regions. This paper demonstrates that the mADE can be successfully used to model such conditions if certain issues are addressed. First, since hydrodynamic dispersion, unlike molecular diffusion, cannot occur upstream of the contaminant source, models must be formulated to prevent "back-dispersion." Second, large variations in aquifer permeability will result in differences between volume-weighted average concentration (resident concentration) and flow-weighted average concentration (flux concentration). Water samples taken from wells may be regarded as flux concentrations, while soil samples may be analyzed to determine resident concentrations. While the mADE is usually derived in terms of resident concentration, it is known that a mADE of the same mathematical form may be written in terms of flux concentration. However, when solving the latter, the mathematical transformation of a flux boundary condition applied to the resident mADE becomes a concentration type boundary condition for the flux mADE. Initial conditions must also be consistent with the form of the mADE that is to be solved. Thus, careful attention must be given to the type of concentration data that is available, whether resident or flux concentrations are to be simulated, and to boundary and initial conditions. We present 3-D analytical solutions for resident and flux concentrations, discuss methods of solving numerical models to obtain resident and flux concentrations, and compare results for hypothetical problems. We also present an upscaling method for computing "effective" dispersivities and other mADE model parameters in terms of physically meaningful parameters in a diffusion-limited mobile-immobile model. Application of the latter to previously published studies of

  2. Sensitivity of the engineered barrier system (EBS) release rate to alternative conceptual models of advective release from waste packages under dripping fractures

    International Nuclear Information System (INIS)

    Lee, J.H.; Atkins, J.E.; McNeish, J.A.; Vallikat, V.

    1996-01-01

    Simulations were conducted to analyze the sensitivity of the engineered barrier system (EBS) release rate to alternative conceptual models of the advective release from waste packages under dripping fractures. The first conceptual model assumed that dripping water directly contacts the waste form inside the 'failed' waste package, and radionuclides are released from the EBS by advection. The second conceptual model assumed that dripping water is diverted around the 'failed' waste package (because of the presence of corrosion products plugging the perforations) and dripping water is prevented from directly contacting the waste form. In the second model, radionuclides were assumed to transport through the perforations by diffusion, and, once outside the waste package, to be released from the EBS by advection. The second model was to incorporate more realism into the EBS release calculations. For the case with the second EBS release model, most radionuclides had significantly lower peak EBS release rates (from at least one to several orders of magnitude) than with the first EBS release model. The impacts of the alternative EBS release models were greater for the radionuclides with a low solubility (or solubility-limited radionuclides) than for the radionuclides with a high solubility (or waste form dissolution-limited radionuclides). The analyses indicated that the EBS release model representing advection through a 'failed' waste package (the first EBS release model) may be too conservative in predicting the EBS performance. One major implication from this sensitivity study was that a 'failed' waste package container with multiple perforations may still be able to perform effectively as an important barrier to radionuclide release. (author)

  3. Clustering, advection, and patterns in a model of population dynamics with neighborhood-dependent rates

    Science.gov (United States)

    Hernández-García, Emilio; López, Cristóbal

    2004-07-01

    We introduce a simple model of population dynamics which considers reproducing individuals or particles with birth and death rates depending on the number of other individuals in their neighborhood. The model shows an inhomogeneous quasistationary pattern with many different clusters of particles arranged periodically in space. We derive the equation for the macroscopic density of particles, perform a linear stability analysis on it, and show that there is a finite-wavelength instability leading to pattern formation. This is responsible for the approximate periodicity with which the clusters of particles arrange in the microscopic model. In addition, we consider the population when immersed in a fluid medium and analyze the influence of advection on global properties of the model, such as the average number of individuals.

  4. An advective volume-balance model for flow in porous media

    Science.gov (United States)

    Malaga, Carlos; Mandujano, Francisco; Becerra, Julian

    2016-11-01

    Volume-balance models are used by petroleum engineers to simulate multiphase and multicomponent flow phenomena in porous media and the extraction process in oil reservoirs. In these models, mass conservation equations and Darcy's law are supplemented by a balance condition for the pore and fluid volumes. This provides a pressure equation suitable for simulating a compressible flow within a compressible solid matrix. Here we present an alternative interpretation of the volume-balance condition that includes the advective transport within a consolidated porous media. We obtain a modified equation for the time evolution of the pressure field. Preliminary numerical tests of phase separation due to gravity suggest the model reproduces qualitatively the physical phenomena. Fondo Sectorial CONACYT-SENER Grant Number 42536 (DGAJ-SPI-34-170412-217).

  5. Pangolin v1.0, a conservative 2-D advection model towards large-scale parallel calculation

    Directory of Open Access Journals (Sweden)

    A. Praga

    2015-02-01

    Full Text Available To exploit the possibilities of parallel computers, we designed a large-scale bidimensional atmospheric advection model named Pangolin. As the basis for a future chemistry-transport model, a finite-volume approach for advection was chosen to ensure mass preservation and to ease parallelization. To overcome the pole restriction on time steps for a regular latitude–longitude grid, Pangolin uses a quasi-area-preserving reduced latitude–longitude grid. The features of the regular grid are exploited to reduce the memory footprint and enable effective parallel performances. In addition, a custom domain decomposition algorithm is presented. To assess the validity of the advection scheme, its results are compared with state-of-the-art models on algebraic test cases. Finally, parallel performances are shown in terms of strong scaling and confirm the efficient scalability up to a few hundred cores.

  6. Floc size distributions of suspended kaolinite in an advection transport dominated tank: measurements and modeling

    Science.gov (United States)

    Shen, Xiaoteng; Maa, Jerome P.-Y.

    2017-11-01

    In estuaries and coastal waters, floc size and its statistical distributions of cohesive sediments are of primary importance, due to their effects on the settling velocity and thus deposition rates of cohesive aggregates. The development of a robust flocculation model that includes the predictions of floc size distributions (FSDs), however, is still in a research stage. In this study, a one-dimensional longitudinal (1-DL) flocculation model along a streamtube is developed. This model is based on solving the population balance equation to find the FSDs by using the quadrature method of moments. To validate this model, a laboratory experiment is carried out to produce an advection transport-dominant environment in a cylindrical tank. The flow field is generated by a marine pump mounted at the bottom center, with its outlet facing upward. This setup generates an axially symmetric flow which is measured by an acoustic Doppler velocimeter (ADV). The measurement results provide the hydrodynamic input data required for this 1-DL model. The other measurement results, the FSDs, are acquired by using an automatic underwater camera system and the resulting images are analyzed to validate the predicted FSDs. This study shows that the FSDs as well as their representative sizes can be efficiently and reasonably simulated by this 1-DL model.

  7. A New Evapotranspiration Model Accounting for Advection and Its Validation during SMEX02

    Directory of Open Access Journals (Sweden)

    Yongmin Yang

    2013-01-01

    Full Text Available Based on the crop water stress index (CWSI concept, a new model was proposed to account for advection to estimate evapotranspiration. Both local scale evaluation with sites observations and regional scale evaluation with a remote dataset from Landsat 7 ETM+ were carried out to assess the performance of this model. Local scale evaluation indicates that this newly developed model can effectively characterize the daily variations of evapotranspiration and the predicted results show good agreement with the site observations. For all the 6 corn sites, the coefficient of determination (R2 is 0.90 and the root mean square difference (RMSD is 58.52W/m2. For all the 6 soybean sites, the R2 and RMSD are 0.85 and 49.46W/m2, respectively. Regional scale evaluation shows that the model can capture the spatial variations of evapotranspiration at the Landsat-based scale. Clear spatial patterns were observed at the Landsat-based scale and are closely related to the dominant land covers, corn and soybean. Furthermore, the surface resistance derived from instantaneous CWSI was applied to the Penman-Monteith equation to estimate daily evapotranspiration. Overall, results indicate that this newly developed model is capable of estimating reliable surface heat fluxes using remotely sensed data.

  8. Numerical simulations of an advection fog event over Shanghai Pudong International Airport with the WRF model

    Science.gov (United States)

    Lin, Caiyan; Zhang, Zhongfeng; Pu, Zhaoxia; Wang, Fengyun

    2017-10-01

    A series of numerical simulations is conducted to understand the formation, evolution, and dissipation of an advection fog event over Shanghai Pudong International Airport (ZSPD) with the Weather Research and Forecasting (WRF) model. Using the current operational settings at the Meteorological Center of East China Air Traffic Management Bureau, the WRF model successfully predicts the fog event at ZSPD. Additional numerical experiments are performed to examine the physical processes associated with the fog event. The results indicate that prediction of this particular fog event is sensitive to microphysical schemes for the time of fog dissipation but not for the time of fog onset. The simulated timing of the arrival and dissipation of the fog, as well as the cloud distribution, is substantially sensitive to the planetary boundary layer and radiation (both longwave and shortwave) processes. Moreover, varying forecast lead times also produces different simulation results for the fog event regarding its onset and duration, suggesting a trade-off between more accurate initial conditions and a proper forecast lead time that allows model physical processes to spin up adequately during the fog simulation. The overall outcomes from this study imply that the complexity of physical processes and their interactions within the WRF model during fog evolution and dissipation is a key area of future research.

  9. Analysis of a finite-difference and a Galerkin technique applied to the simulation of advection and diffusion of air pollutants from a line source

    International Nuclear Information System (INIS)

    Runca, E.; Melli, P.; Sardei, F.

    1985-01-01

    A finite-difference scheme and a Galerkin scheme are compared with respect to a very accurate solution describing time-dependent advection and diffusion of air pollutants from a line source in an atmosphere vertically stratified and limited by an inversion layer. The accurate solution was achieved by applying the finite-difference scheme on a very refined grid with a very small time step. The grid size and time step were defined according to stability and accuracy criteria discussed in the text. It is found that for the problem considered the two methods can be considered equally accurate. However, the Galerkin method gives a better approximation in the vicinity of the source. This was assumed to be partly due to the different way the source term is taken into account in the two methods. Improvement of the accuracy of the finite-difference scheme was achieved by approximating, at every step, the contribution of the source term by a Gaussian puff moving and diffusing with the velocity and diffusivity of the source location, instead of utilizing a stepwise function for the numerical approximation of the delta function representing the source term

  10. Fractal model of anomalous diffusion.

    Science.gov (United States)

    Gmachowski, Lech

    2015-12-01

    An equation of motion is derived from fractal analysis of the Brownian particle trajectory in which the asymptotic fractal dimension of the trajectory has a required value. The formula makes it possible to calculate the time dependence of the mean square displacement for both short and long periods when the molecule diffuses anomalously. The anomalous diffusion which occurs after long periods is characterized by two variables, the transport coefficient and the anomalous diffusion exponent. An explicit formula is derived for the transport coefficient, which is related to the diffusion constant, as dependent on the Brownian step time, and the anomalous diffusion exponent. The model makes it possible to deduce anomalous diffusion properties from experimental data obtained even for short time periods and to estimate the transport coefficient in systems for which the diffusion behavior has been investigated. The results were confirmed for both sub and super-diffusion.

  11. Empirical modeling of single-wake advection and expansion using full-scale pulsed lidar-based measurements

    DEFF Research Database (Denmark)

    Machefaux, Ewan; Larsen, Gunner Chr.; Troldborg, Niels

    2015-01-01

    and to obtain an estimate of the wake expansion in a fixed frame of reference. A comparison shows good agreement between the measured average expansion and the Computational Fluid Dynamics (CFD) large eddy simulation–actuator line computations. Frandsen’s expansion model seems to predict the wake expansion......In the present paper, single-wake dynamics have been studied both experimentally and numerically. The use of pulsed lidar measurements allows for validation of basic dynamic wake meandering modeling assumptions. Wake center tracking is used to estimate the wake advection velocity experimentally...... fairly well in the far wake but lacks accuracy in the outer region of the near wake. An empirical relationship, relating maximum wake induction and wake advection velocity, is derived and linked to the characteristics of a spherical vortex structure. Furthermore, a new empirical model for single...

  12. Concentration polarization, surface currents, and bulk advection in a microchannel

    DEFF Research Database (Denmark)

    Nielsen, Christoffer Peder; Bruus, Henrik

    2014-01-01

    We present a comprehensive analysis of salt transport and overlimiting currents in a microchannel during concentration polarization. We have carried out full numerical simulations of the coupled Poisson-Nernst-Planck-Stokes problem governing the transport and rationalized the behavior of the syst...... as in the limit of negligible surface charge. By including the effects of diffusion and advection in the diffuse part of the electric double layers, we extend a recently published analytical model of overlimiting current due to surface conduction....

  13. PyFR: An open source framework for solving advection-diffusion type problems on streaming architectures using the flux reconstruction approach

    Science.gov (United States)

    Witherden, F. D.; Farrington, A. M.; Vincent, P. E.

    2014-11-01

    High-order numerical methods for unstructured grids combine the superior accuracy of high-order spectral or finite difference methods with the geometric flexibility of low-order finite volume or finite element schemes. The Flux Reconstruction (FR) approach unifies various high-order schemes for unstructured grids within a single framework. Additionally, the FR approach exhibits a significant degree of element locality, and is thus able to run efficiently on modern streaming architectures, such as Graphical Processing Units (GPUs). The aforementioned properties of FR mean it offers a promising route to performing affordable, and hence industrially relevant, scale-resolving simulations of hitherto intractable unsteady flows within the vicinity of real-world engineering geometries. In this paper we present PyFR, an open-source Python based framework for solving advection-diffusion type problems on streaming architectures using the FR approach. The framework is designed to solve a range of governing systems on mixed unstructured grids containing various element types. It is also designed to target a range of hardware platforms via use of an in-built domain specific language based on the Mako templating engine. The current release of PyFR is able to solve the compressible Euler and Navier-Stokes equations on grids of quadrilateral and triangular elements in two dimensions, and hexahedral elements in three dimensions, targeting clusters of CPUs, and NVIDIA GPUs. Results are presented for various benchmark flow problems, single-node performance is discussed, and scalability of the code is demonstrated on up to 104 NVIDIA M2090 GPUs. The software is freely available under a 3-Clause New Style BSD license (see www.pyfr.org).

  14. Exploring the boundary-layer cloud-climate feedback through Single-Column Model in Radiative-Advective Equilibrium

    Science.gov (United States)

    Dal Gesso, Sara; Neggers, Roel

    2017-04-01

    Boundary-layer clouds remain the major contributor to the inter-model spread in future climate predictions. Although light has been shed on the low-level cloud feedback, much remains to be understood about the physical mechanisms at the basis of the response of these clouds to climate warming. In the present study, EC-EARTH Single Column Model (SCM) is used to explore the boundary-layer cloud-climate feedback by imposing a Radiative-Advective Equilibrium, namely a balance between the radiative cooling and the advection of warm air. 30-year simulations are performed with the SCM forced by high-frequency cfSites outputs of the CMIP5 simulations of the host General Circulation Model (GCM) for both the AMIP and AMIP4K experiments. As this study exclusively focuses on marine low-level cloud regimes, the simulations are performed at the Barbados Cloud Observatory in the so-called "dry period", when the large-scale forcing are representative of subtropical marine trade-wind conditions. A first step is to assess how representative long-term SCM simulations are of their host GCM. Subsequently, the SCM is forced by different GCMs within the same framework. In this way, the contribution of the physical parameterization to the boundary-layer cloud feedback is isolated from the dynamics, and systematically evaluated. Finally, a procedure to integrate Large-Eddy Simulations and observations into this framework is discussed.

  15. Modelling of evaporation in a sparse millet crop using a two-source model including sensible heat advection within the canopy

    Science.gov (United States)

    Lund, M. R.; Soegaard, H.

    2003-09-01

    During two successive growing seasons meteorological measurements were made in a pearl millet field in the Sahel to investigate the evaporation process in relation to crop growth. The evaporation was measured by eddy correlation and simulated using the Shuttleworth Wallace (SW) model [Q. J. R. Meteorol. Soc. 111 (1985) 839-855]. To take sun height and multi-layer scattering into account a radiation balance model was formulated. The model indicates that partitioning of the net radiation between the vegetation and the soil may be estimated ( r2=0.94) from the fraction of diffuse radiation, the leaf area index and an attenuation coefficient, but that the attenuation coefficient may not be similar in different locations. To solve the SW-model with respect to the soil resistance an iterative solution was employed with the total evaporation estimated from the Bowen-ratio calculated from eddy correlation measurements. The procedure made it possible to derive stable estimates of soil resistance at soil evaporation rates down to 25 W m -2. The soil resistance was found to be in accordance with evaporation through a dry surface layer. The SW-model indicates, that advection of sensible heat from the dry soil to the plants, increases transpiration considerably. This will cause management techniques, such as mulching and dry farming, aimed at reducing soil evaporation to be less effective than might be anticipated. The effects of raising the leaf area index to improve the microclimate is discussed in relation to management of the available water and crop security.

  16. In vivo facilitated diffusion model.

    Directory of Open Access Journals (Sweden)

    Maximilian Bauer

    Full Text Available Under dilute in vitro conditions transcription factors rapidly locate their target sequence on DNA by using the facilitated diffusion mechanism. However, whether this strategy of alternating between three-dimensional bulk diffusion and one-dimensional sliding along the DNA contour is still beneficial in the crowded interior of cells is highly disputed. Here we use a simple model for the bacterial genome inside the cell and present a semi-analytical model for the in vivo target search of transcription factors within the facilitated diffusion framework. Without having to resort to extensive simulations we determine the mean search time of a lac repressor in a living E. coli cell by including parameters deduced from experimental measurements. The results agree very well with experimental findings, and thus the facilitated diffusion picture emerges as a quantitative approach to gene regulation in living bacteria cells. Furthermore we see that the search time is not very sensitive to the parameters characterizing the DNA configuration and that the cell seems to operate very close to optimal conditions for target localization. Local searches as implied by the colocalization mechanism are only found to mildly accelerate the mean search time within our model.

  17. Hybrid advection scheme for 3-dimensional atmospheric models. Testing and application for a study of NO{sub x} transport

    Energy Technology Data Exchange (ETDEWEB)

    Zubov, V.A.; Rozanov, E.V. [Main Geophysical Observatory, St.Petersburg (Russian Federation); Schlesinger, M.E.; Andronova, N.G. [Illinois Univ., Urbana-Champaign, IL (United States). Dept. of Atmospheric Sciences

    1997-12-31

    The problems of ozone depletion, climate change and atmospheric pollution strongly depend on the processes of production, destruction and transport of chemical species. A hybrid transport scheme was developed, consisting of the semi-Lagrangian scheme for horizontal advection and the Prather scheme for vertical transport, which have been used for the Atmospheric Chemical Transport model to calculate the distributions of different chemical species. The performance of the new hybrid scheme has been evaluated in comparison with other transport schemes on the basis of specially designed tests. The seasonal cycle of the distribution of N{sub 2}O simulated by the model, as well as the dispersion of NO{sub x} exhausted from subsonic aircraft, are in a good agreement with published data. (author) 8 refs.

  18. Numerical vs. turbulent diffusion in geophysical flow modelling

    International Nuclear Information System (INIS)

    D'Isidoro, M.; Maurizi, A.; Tampieri, F.

    2008-01-01

    Numerical advection schemes induce the spreading of passive tracers from localized sources. The effects of changing resolution and Courant number are investigated using the WAF advection scheme, which leads to a sub-diffusive process. The spreading rate from an instantaneous source is compared with the physical diffusion necessary to simulate unresolved turbulent motions. The time at which the physical diffusion process overpowers the numerical spreading is estimated, and is shown to reduce as the resolution increases, and to increase as the wind velocity increases.

  19. Turbulent eddy diffusion models in exposure assessment - Determination of the eddy diffusion coefficient.

    Science.gov (United States)

    Shao, Yuan; Ramachandran, Sandhya; Arnold, Susan; Ramachandran, Gurumurthy

    2017-03-01

    The use of the turbulent eddy diffusion model and its variants in exposure assessment is limited due to the lack of knowledge regarding the isotropic eddy diffusion coefficient, D T . But some studies have suggested a possible relationship between D T and the air changes per hour (ACH) through a room. The main goal of this study was to accurately estimate D T for a range of ACH values by minimizing the difference between the concentrations measured and predicted by eddy diffusion model. We constructed an experimental chamber with a spatial concentration gradient away from the contaminant source, and conducted 27 3-hr long experiments using toluene and acetone under different air flow conditions (0.43-2.89 ACHs). An eddy diffusion model accounting for chamber boundary, general ventilation, and advection was developed. A mathematical expression for the slope based on the geometrical parameters of the ventilation system was also derived. There is a strong linear relationship between D T and ACH, providing a surrogate parameter for estimating D T in real-life settings. For the first time, a mathematical expression for the relationship between D T and ACH has been derived that also corrects for non-ideal conditions, and the calculated value of the slope between these two parameters is very close to the experimentally determined value. The values of D T obtained from the experiments are generally consistent with values reported in the literature. They are also independent of averaging time of measurements, allowing for comparison of values obtained from different measurement settings. These findings make the use of turbulent eddy diffusion models for exposure assessment in workplace/indoor environments more practical.

  20. MEASUREMENTS ON, AND MODELING OF DIFFUSIVE AND ADVECTIVE RADON TRANSPORT IN SOIL

    NARCIS (Netherlands)

    VANDERGRAAF, ER; WITTEMAN, GAA; VANDERSPOEL, WH; ANDERSEN, CE; DEMEIJER, RJ

    1994-01-01

    Results are presented of measurements on radon transport in soil under controlled conditions with a laboratory facility consisting of a stainless steel vessel (height and diameter 2 m) filled with a uniform column of sand. At several depths under the sand surface, probes are radially inserted into

  1. A generalized advection dispersion equation

    Indian Academy of Sciences (India)

    This paper examines a possible effect of uncertainties, variability or heterogeneity of any dynamic system when being included in its evolution rule; the notion is illustrated with the advection dispersion equation, which describes the groundwater pollution model. An uncertain derivative is defined; some properties of.

  2. Improved rigorous upper bounds for transport due to passive advection described by simple models of bounded systems

    International Nuclear Information System (INIS)

    Kim, Chang-Bae; Krommes, J.A.

    1988-08-01

    The work of Krommes and Smith on rigorous upper bounds for the turbulent transport of a passively advected scalar [/ital Ann. Phys./ 177:246 (1987)] is extended in two directions: (1) For their ''reference model,'' improved upper bounds are obtained by utilizing more sophisticated two-time constraints which include the effects of cross-correlations up to fourth order. Numerical solutions of the model stochastic differential equation are also obtained; they show that the new bounds compare quite favorably with the exact results, even at large Reynolds and Kubo numbers. (2) The theory is extended to take account of a finite spatial autocorrelation length L/sub c/. As a reasonably generic example, the problem of particle transport due to statistically specified stochastic magnetic fields in a collisionless turbulent plasma is revisited. A bound is obtained which reduces for small L/sub c/ to the quasilinear limit and for large L/sub c/ to the strong turbulence limit, and which provides a reasonable and rigorous interpolation for intermediate values of L/sub c/. 18 refs., 6 figs

  3. Low-rank Kalman filtering for efficient state estimation of subsurface advective contaminant transport models

    KAUST Repository

    El Gharamti, Mohamad

    2012-04-01

    Accurate knowledge of the movement of contaminants in porous media is essential to track their trajectory and later extract them from the aquifer. A two-dimensional flow model is implemented and then applied on a linear contaminant transport model in the same porous medium. Because of different sources of uncertainties, this coupled model might not be able to accurately track the contaminant state. Incorporating observations through the process of data assimilation can guide the model toward the true trajectory of the system. The Kalman filter (KF), or its nonlinear invariants, can be used to tackle this problem. To overcome the prohibitive computational cost of the KF, the singular evolutive Kalman filter (SEKF) and the singular fixed Kalman filter (SFKF) are used, which are variants of the KF operating with low-rank covariance matrices. Experimental results suggest that under perfect and imperfect model setups, the low-rank filters can provide estimates as accurate as the full KF but at much lower computational effort. Low-rank filters are demonstrated to significantly reduce the computational effort of the KF to almost 3%. © 2012 American Society of Civil Engineers.

  4. Nowcasting of precipitation – Advective statistical forecast model (SAM) for the Czech Republic

    Czech Academy of Sciences Publication Activity Database

    Sokol, Zbyněk; Pešice, Petr

    2012-01-01

    Roč. 103, - (2012), s. 70-79 ISSN 0169-8095 R&D Projects: GA MŠk ME09033; GA ČR GA205/07/0905 Institutional research plan: CEZ:AV0Z30420517 Keywords : Precipitation forecast * Statistical models * Regression * Quantitative precipitation forecast * Extrapolation forecast Subject RIV: DG - Athmosphere Sciences, Meteorology Impact factor: 2.200, year: 2012 http://dx.doi.org/10.1016/j.atmosres.2011.07.013

  5. LABORATORY-SCALE STUDY ON REACTIVE CONTAMINANT TRANSPORT IN SOIL BY MEANS OF ONE-DIMENSIONAL ADVECTIVE DISPERSIVE MODELS

    Directory of Open Access Journals (Sweden)

    Vincenzo Comegna

    2012-06-01

    Full Text Available We measured adsorption and transport of cadmium (Cd in the presence of Ca2+ and Na+ salts of varying ionic strengths and pH by using batch and miscible displacement experiments, carried out on undisturbed and homogenized soil columns. A fluvent-vertic soil was used in this study. In the column experiment a clear effect of ionic strength on breakthrough curves (BTCs of Cd2+ was observed when the Na+ concentration was increased from 0.02 to 0.2 M. The effect of increasing the Ca2+ concentration on Cd2+ absorption and transport was relatively less pronounced than that recorded for the Na+ solution. At low pH values, H+ ions competed strongly with Cd2+ ions and, at a high pH, precipitation was the main process taking place for Cd2+ sorption. The reliability of the advection- dispersion equation (ADE was tested. When implemented within the least-squares method, the model produced a sufficiently precise space-time distribution of Cd2+ ion concentrations. The results of this study demonstrated also, that laboratory leaching experiments, when performed on homogenized soil columns, can greatly underestimate Cd2+ ions transport in the field and that preferential flow can increase the mobility and velocity of cadmium movement to the groundwater.

  6. Modeling Internet Diffusion in Developing Countries

    Directory of Open Access Journals (Sweden)

    Scott McCoy

    2012-04-01

    Full Text Available Despite the increasing importance of the Internet, there is little work that addresses the degree to which the models and theories of Internet diffusion in developed countries can be applied to Internet diffusion in developing countries. This paper presents the first attempt to address this issue through theory driven modeling of Internet diffusion. Consistent with previous research, our findings suggest that economic development and technology infrastructure are musts for Internet diffusion. Interestingly, users’ cognition and government policies can accelerate Internet diffusion only after a certain level of human rights has been reached in a developing country.

  7. Stochastic models of technology diffusion

    Energy Technology Data Exchange (ETDEWEB)

    Horner, S.M.

    1978-01-01

    Simple stochastic models of epidemics have often been employed by economists and sociologists in the study of the diffusion of information or new technology. In the present theoretical inquiry the properties of a family of models related to these epidemic processes are investigated, and use of the results in the study of technical change phenomena is demonstrated. A moving limit to the level of productivity of capital is hypothesized, the exact increment is determined exogenously by basic or applied research carried on outside the industry. It is this level of latent productivity (LPRO) which fills the role of the ''disease'' which ''spreads'' through the industry. In the single advance models, LPRO is assumed to have moved forward at some point in time, after which an individual firm may advance to the limit by virtue of its own research and development or through imitation of the successful efforts of another firm. In the recurrent advance models, LPRO is assumed to increase at either a constant absolute or relative rate. The firms, in the course of their research and imitation efforts, follow behind LPRO. Using the methods of stochastic processes, it is shown that these models are equivalent to ergodic Markov chains. Based on an assumption of constant intensity of R and D effort, it is shown how the single and recurrent advance models reflect on Joseph Schumpeter's hypothesis that more concentrated industries tend to be more technologically advanced than less concentrated. The results corroborate the weakest version of the hypothesis: monopoly prices need not be higher than competitive prices.

  8. Fractal model of anomalous diffusion

    OpenAIRE

    Gmachowski, Lech

    2015-01-01

    An equation of motion is derived from fractal analysis of the Brownian particle trajectory in which the asymptotic fractal dimension of the trajectory has a required value. The formula makes it possible to calculate the time dependence of the mean square displacement for both short and long periods when the molecule diffuses anomalously. The anomalous diffusion which occurs after long periods is characterized by two variables, the transport coefficient and the anomalous diffusion exponent. An...

  9. Advective transport of CO2 in permeable media induced by atmospheric pressure fluctuations: 1. An analytical model

    Science.gov (United States)

    W. J. Massman

    2006-01-01

    Advective flows within soils and snowpacks caused by pressure fluctuations at the upper surface of either medium can significantly influence the exchange rate of many trace gases from the underlying substrate to the atmosphere. Given the importance of many of these trace gases in understanding biogeochemical cycling and global change, it is crucial to quantify (as much...

  10. Industrial diffusion models and technological standardization

    International Nuclear Information System (INIS)

    Carrillo-Hermosilla, J.

    2007-01-01

    Conventional models of technology diffusion have typically focused on the question of the rate of diffusion at which one new technology is fully adopted. The model described here provides a broader approach, from the perspective the extension of the diffusion of multiple technologies, and the related phenomenon of standardization. Moreover, most conventional research has characterized the diffusion process in terms of technology attributes or adopting firms attributes. Alternatively, we propose here a wide-ranging and consistent taxonomy of the relationships between the circumstances of an industry and the attributes of the technology standardization processes taking place within it. (Author) 100 refs

  11. Numerical simulation of life cycles of advection warm fog

    Science.gov (United States)

    Hung, R. J.; Vaughan, O. H.

    1977-01-01

    The formation, development and dissipation of advection warm fog is investigated. The equations employed in the model include the equation of continuity, momentum and energy for the descriptions of density, wind component and potential temperature, respectively, together with two diffusion equations for the modification of water-vapor mixing ratio and liquid-water mixing ratios. A description of the vertical turbulent transfer of heat, moisture and momentum has been taken into consideration. The turbulent exchange coefficients adopted in the model are based on empirical flux-gradient relations.

  12. Diffusion in condensed matter methods, materials, models

    CERN Document Server

    Kärger, Jörg

    2005-01-01

    Diffusion as the process of particle transport due to stochastic movement is a phenomenon of crucial relevance for a large variety of processes and materials. This comprehensive, handbook- style survey of diffusion in condensed matter gives detailed insight into diffusion as the process of particle transport due to stochastic movement. Leading experts in the field describe in 23 chapters the different aspects of diffusion, covering microscopic and macroscopic experimental techniques and exemplary results for various classes of solids, liquids and interfaces as well as several theoretical concepts and models. Students and scientists in physics, chemistry, materials science, and biology will benefit from this detailed compilation.

  13. Spurious sea ice formation caused by oscillatory ocean tracer advection schemes

    Science.gov (United States)

    Naughten, Kaitlin A.; Galton-Fenzi, Benjamin K.; Meissner, Katrin J.; England, Matthew H.; Brassington, Gary B.; Colberg, Frank; Hattermann, Tore; Debernard, Jens B.

    2017-08-01

    Tracer advection schemes used by ocean models are susceptible to artificial oscillations: a form of numerical error whereby the advected field alternates between overshooting and undershooting the exact solution, producing false extrema. Here we show that these oscillations have undesirable interactions with a coupled sea ice model. When oscillations cause the near-surface ocean temperature to fall below the freezing point, sea ice forms for no reason other than numerical error. This spurious sea ice formation has significant and wide-ranging impacts on Southern Ocean simulations, including the disappearance of coastal polynyas, stratification of the water column, erosion of Winter Water, and upwelling of warm Circumpolar Deep Water. This significantly limits the model's suitability for coupled ocean-ice and climate studies. Using the terrain-following-coordinate ocean model ROMS (Regional Ocean Modelling System) coupled to the sea ice model CICE (Community Ice CodE) on a circumpolar Antarctic domain, we compare the performance of three different tracer advection schemes, as well as two levels of parameterised diffusion and the addition of flux limiters to prevent numerical oscillations. The upwind third-order advection scheme performs better than the centered fourth-order and Akima fourth-order advection schemes, with far fewer incidents of spurious sea ice formation. The latter two schemes are less problematic with higher parameterised diffusion, although some supercooling artifacts persist. Spurious supercooling was eliminated by adding flux limiters to the upwind third-order scheme. We present this comparison as evidence of the problematic nature of oscillatory advection schemes in sea ice formation regions, and urge other ocean/sea-ice modellers to exercise caution when using such schemes.

  14. Probability and Cumulative Density Function Methods for the Stochastic Advection-Reaction Equation

    Energy Technology Data Exchange (ETDEWEB)

    Barajas-Solano, David A.; Tartakovsky, Alexandre M.

    2018-01-01

    We present a cumulative density function (CDF) method for the probabilistic analysis of $d$-dimensional advection-dominated reactive transport in heterogeneous media. We employ a probabilistic approach in which epistemic uncertainty on the spatial heterogeneity of Darcy-scale transport coefficients is modeled in terms of random fields with given correlation structures. Our proposed CDF method employs a modified Large-Eddy-Diffusivity (LED) approach to close and localize the nonlocal equations governing the one-point PDF and CDF of the concentration field, resulting in a $(d + 1)$ dimensional PDE. Compared to the classsical LED localization, the proposed modified LED localization explicitly accounts for the mean-field advective dynamics over the phase space of the PDF and CDF. To illustrate the accuracy of the proposed closure, we apply our CDF method to one-dimensional single-species reactive transport with uncertain, heterogeneous advection velocities and reaction rates modeled as random fields.

  15. A tracer diffusion model derived from microstructure

    International Nuclear Information System (INIS)

    Lehikoinen, Jarmo; Muurinen, Arto; Olin, Markus

    2012-01-01

    Document available in extended abstract form only. Full text of publication follows: Numerous attempts have been made to explain the tracer diffusion of various solutes in compacted clays. These attempts have commonly suffered from an inability to describe the diffusion of uncharged and charged solutes with a single unified model. Here, an internally consistent approach to describing the diffusion of solutes in a heterogeneous porous medium, such as compacted bentonite, in terms of its microstructure is presented. The microstructure is taken to be represented by a succession of unit cells, which consist of two consecutive regions (Do, 1996). In the first region, the diffusion is viewed to occur in two parallel paths: one through microcrystalline units (micropores) and the other through meso-pores between the microcrystalline units. Solutes exiting these two paths are then joined together to continue diffusing through the second, disordered, region, connecting the two adjacent microcrystalline units. Adsorption (incl. co-ion exclusion) is thought to occur in the micropores, whereas meso-pores and the disordered region accommodate free species alone. Co-ions are also assumed to experience transfer resistance into and out of the micropores, which is characterized in the model by a transmission coefficient. Although the model is not new per se, its application to compacted clays has never been attempted before. It is shown that in the limit of strong adsorption, the effective diffusivity is limited from above only by the microstructural parameters of the model porous medium. As intuitive and logical as this result may appear, it has not been proven before. In the limit of vanishing disordered region, the effective diffusivity is no longer explicitly constrained by any of the model parameters. The tortuosity of the diffusion path, i.e. the quotient of the actual diffusion path length in the porous-medium coordinates and the characteristic length of the laboratory frame

  16. Diffusion of bacteriophages through artificial biofilm models.

    Science.gov (United States)

    Hu, Jun; Miyanaga, Kazuhiko; Tanji, Yasunori

    2012-01-01

    The simple two-chamber diffusion method was improved to study the diffusion properties of bacteriophage (phage) T4 through a model biofilm agarose gel membrane (AGM) embedded with dead host Escherichia coli K12 cells. The apparent diffusion coefficient (D(app) ) of phage T4 was calculated to be 2.4 × 10(-12) m(2) /s in 0.5% AGM, which was lower than the coefficient of 4.2 × 10(-12) m(2) /s in 0.5% AGM without host cells. The phage adsorption process by dead host cells slowed the apparent phage diffusion. The Langmuir adsorption equation was used to simulate phage adsorption under different multiplicity of infections (MOIs); the maximum adsorbed phage MOI was calculated to be 417 PFU/CFU, and the Langmuir adsorption constant K(L) was 6.9 × 10(-4) CFU/PFU. To evaluate the effects of phage proliferation on diffusion, a simple syringe-based biofilm model was developed. The phage was added into this homogenous biofilm model when the host cells were in an exponential growth phase, and the apparent diffusion coefficient was greatly enhanced. We concluded that D(app) of phages through biofilms could be distinctly affected by phage adsorption and proliferation, and that the idea of D(app) and these methods can be used to study diffusion properties through real biofilms. Copyright © 2011 American Institute of Chemical Engineers (AIChE).

  17. A variational multi-scale method with spectral approximation of the sub-scales: Application to the 1D advection-diffusion equations

    KAUST Repository

    Chacón Rebollo, Tomás

    2015-03-01

    This paper introduces a variational multi-scale method where the sub-grid scales are computed by spectral approximations. It is based upon an extension of the spectral theorem to non necessarily self-adjoint elliptic operators that have an associated base of eigenfunctions which are orthonormal in weighted L2 spaces. This allows to element-wise calculate the sub-grid scales by means of the associated spectral expansion. We propose a feasible VMS-spectral method by truncation of this spectral expansion to a finite number of modes. We apply this general framework to the convection-diffusion equation, by analytically computing the family of eigenfunctions. We perform a convergence and error analysis. We also present some numerical tests that show the stability of the method for an odd number of spectral modes, and an improvement of accuracy in the large resolved scales, due to the adding of the sub-grid spectral scales.

  18. iCFD: Interpreted Computational Fluid Dynamics – Degeneration of CFD to one-dimensional advection-dispersion models using statistical experimental design – The secondary clarifier

    DEFF Research Database (Denmark)

    Guyonvarch, Estelle; Ramin, Elham; Kulahci, Murat

    2015-01-01

    The present study aims at using statistically designed computational fluid dynamics (CFD) simulations as numerical experiments for the identification of one-dimensional (1-D) advection-dispersion models – computationally light tools, used e.g., as sub-models in systems analysis. The objective...... of (i) assessing different density current sub-models; (ii) implementation of a combined flocculation, hindered, transient and compression settling velocity function; and (iii) assessment of modelling the onset of transient and compression settling. Furthermore, the optimal level of model discretization...... both in 2-D and 1-D was undertaken. Results suggest that the iCFD model developed for the SST through the proposed methodology is able to predict solid distribution with high accuracy – taking a reasonable computational effort – when compared to multi-dimensional numerical experiments, under a wide...

  19. Agent-based modelling of cholera diffusion

    NARCIS (Netherlands)

    Augustijn-Beckers, Petronella; Doldersum, Tom; Useya, Juliana; Augustijn, Dionysius C.M.

    2016-01-01

    This paper introduces a spatially explicit agent-based simulation model for micro-scale cholera diffusion. The model simulates both an environmental reservoir of naturally occurring V.cholerae bacteria and hyperinfectious V. cholerae. Objective of the research is to test if runoff from open refuse

  20. Analytical boron diffusivity model in silicon for thermal diffusion from boron silicate glass film

    Science.gov (United States)

    Kurachi, Ikuo; Yoshioka, Kentaro

    2015-09-01

    An analytical boron diffusivity model in silicon for thermal diffusion from a boron silicate glass (BSG) film has been proposed in terms of enhanced diffusion due to boron-silicon interstitial pair formation. The silicon interstitial generation is considered to be a result of the silicon kick-out mechanism by the diffused boron at the surface. The additional silicon interstitial generation in the bulk silicon is considered to be the dissociation of the diffused pairs. The former one causes the surface boron concentration dependent diffusion. The latter one causes the local boron concentration dependent diffusion. The calculated boron profiles based on the diffusivity model are confirmed to agree with the actual diffusion profiles measured by secondary ion mass spectroscopy (SIMS) for a wide range of the BSG boron concentration. This analytical diffusivity model is a helpful tool for p+ boron diffusion process optimization of n-type solar cell manufacturing.

  1. Bag model with diffuse surface

    International Nuclear Information System (INIS)

    Phatak, S.C.

    1986-01-01

    The constraint of a sharp bag boundary in the bag model is relaxed in the present work. This has been achieved by replacing the square-well potential of the bag model by a smooth scalar potential and introducing a term similar to the bag pressure term. The constraint of the conservation of the energy-momentum tensor is used to obtain an expression for the added bag pressure term. The model is then used to determine the static properties of the nucleon. The calculation shows that the rms charge radius and the nucleon magnetic moment are larger than the corresponding bag model values. Also, the axial vector coupling constant and the πNN coupling constant are in better agreement with the experimental values

  2. Parameter estimation in fractional diffusion models

    CERN Document Server

    Kubilius, Kęstutis; Ralchenko, Kostiantyn

    2017-01-01

    This book is devoted to parameter estimation in diffusion models involving fractional Brownian motion and related processes. For many years now, standard Brownian motion has been (and still remains) a popular model of randomness used to investigate processes in the natural sciences, financial markets, and the economy. The substantial limitation in the use of stochastic diffusion models with Brownian motion is due to the fact that the motion has independent increments, and, therefore, the random noise it generates is “white,” i.e., uncorrelated. However, many processes in the natural sciences, computer networks and financial markets have long-term or short-term dependences, i.e., the correlations of random noise in these processes are non-zero, and slowly or rapidly decrease with time. In particular, models of financial markets demonstrate various kinds of memory and usually this memory is modeled by fractional Brownian diffusion. Therefore, the book constructs diffusion models with memory and provides s...

  3. Identification of a time-varying point source in a system of two coupled linear diffusion-advection- reaction equations: application to surface water pollution

    International Nuclear Information System (INIS)

    Hamdi, Adel

    2009-01-01

    This paper deals with the identification of a point source (localization of its position and recovering the history of its time-varying intensity function) that constitutes the right-hand side of the first equation in a system of two coupled 1D linear transport equations. Assuming that the source intensity function vanishes before reaching the final control time, we prove the identifiability of the sought point source from recording the state relative to the second coupled transport equation at two observation points framing the source region. Note that at least one of the two observation points should be strategic. We establish an identification method that uses these records to identify the source position as the root of a continuous and strictly monotonic function. Whereas the source intensity function is recovered using a recursive formula without any need of an iterative process. Some numerical experiments on a variant of the surface water pollution BOD–OD coupled model are presented

  4. Technological diffusion in the Ramsey model

    Czech Academy of Sciences Publication Activity Database

    Duczynski, Petr

    2002-01-01

    Roč. 1, č. 3 (2002), s. 243-250 ISSN 1607-0704 Institutional research plan: CEZ:AV0Z7085904 Keywords : neoclassical growth model * technological diffusion Subject RIV: AH - Economics http://www.ijbe.org/table%20of%20content/pdf/vol1-3/06.pdf

  5. Diffusion of Macromolecules in Model Oral Biofilms▿

    Science.gov (United States)

    Takenaka, Shoji; Pitts, Betsey; Trivedi, Harsh M.; Stewart, Philip S.

    2009-01-01

    The diffusive penetration of fluorescently tagged macromolecular solutes into model oral biofilms was visualized by time-lapse microscopy. All of the solutes tested, including dextrans, proteases, green fluorescent protein, and immunoglobulin G, accessed the interior of cell clusters 100 to 200 μm in diameter within 3 min or less. PMID:19168660

  6. NEW CAR DEMAND MODELING AND FORECASTING USING BASS DIFFUSION MODEL

    OpenAIRE

    Zuhaimy Ismail; Noratikah Abu

    2013-01-01

    Forecasting model of new product demand has been developed and applied to forecast new vehicle demand in Malaysia. Since the publication of the Bass model in 1969, innovation of new diffusion theory has sparked considerable research among marketing science scholars, operational researchers and mathematicians. The building of Bass diffusion model for forecasting new product within the Malaysian society is presented in this study. The proposed model represents the spread level of new Proton car...

  7. Free surface modelling with two-fluid model and reduced numerical diffusion of the interface

    International Nuclear Information System (INIS)

    Strubelj, Luka; Tiselj, Izrok

    2008-01-01

    Full text of publication follows: The free surface flows are successfully modelled with one of existing free surface models, such as: level set method, volume of fluid method (with/without surface reconstruction), front tracking, two-fluid model (two momentum equations) with modified interphase force and others. The main disadvantage of two-fluid model used for simulations of free surface flows is numerical diffusion of the interface, which can be significantly reduced using the method presented in this paper. Several techniques for reduction of numerical diffusion of the interface have been implemented in the volume of fluid model and are based on modified numerical schemes for advection of volume fraction near the interface. The same approach could be used also for two-fluid method, but according to our experience more successful reduction of numerical diffusion of the interface can be achieved with conservative level set method. Within the conservative level set method, continuity equation for volume fraction is solved and after that the numerical diffusion of the interface is reduced in such a way that the thickness of the interface is kept constant during the simulation. Reduction of the interface diffusion can be also called interface sharpening. In present paper the two-fluid model with interface sharpening is validated on Rayleigh-Taylor instability. Under assumptions of isothermal and incompressible flow of two immiscible fluids, we simulated a system with the fluid of higher density located above the fluid of smaller density in two dimensions. Due to gravity in the system, fluid with higher density moves below the fluid with smaller density. Initial condition is not a flat interface between the fluids, but a sine wave with small amplitude, which develops into a mushroom-like structure. Mushroom-like structure in simulation of Rayleigh-Taylor instability later develops to small droplets as result of numerical dispersion of interface (interface sharpening

  8. Modelling Thermal Diffusivity of Differently Textured Soils

    Science.gov (United States)

    Lukiashchenko, K. I.; Arkhangelskaya, T. A.

    2018-02-01

    A series of models has been proposed for estimating thermal diffusivity of soils at different water contents. Models have been trained on 49 soil samples with the texture range from sands to silty clays. The bulk density of the studied soils varied from 0.86 to 1.82 g/cm3; the organic carbon was between 0.05 and 6.49%; the physical clay ranged from 1 to 76%. The thermal diffusivity of undisturbed soil cores measured by the unsteady-state method varied from 0.78×10-7 m2/s for silty clay at the water content of 0.142 cm3/cm3 to 10.09 × 10-7 m2/s for sand at the water content of 0.138 cm3/cm3. Each experimental curve was described by the four-parameter function proposed earlier. Pedotransfer functions were then developed to estimate the parameters of the thermal diffusivity vs. water content function from data on soil texture, bulk density, and organic carbon. Models were tested on 32 samples not included in the training set. The root mean square errors of the best-performing models were 17-38%. The models using texture data performed better than the model using only data on soil bulk density and organic carbon.

  9. Modeling of Reaction Processes Controlled by Diffusion

    International Nuclear Information System (INIS)

    Revelli, Jorge

    2003-01-01

    Stochastic modeling is quite powerful in science and technology.The technics derived from this process have been used with great success in laser theory, biological systems and chemical reactions.Besides, they provide a theoretical framework for the analysis of experimental results on the field of particle's diffusion in ordered and disordered materials.In this work we analyze transport processes in one-dimensional fluctuating media, which are media that change their state in time.This fact induces changes in the movements of the particles giving rise to different phenomena and dynamics that will be described and analyzed in this work.We present some random walk models to describe these fluctuating media.These models include state transitions governed by different dynamical processes.We also analyze the trapping problem in a lattice by means of a simple model which predicts a resonance-like phenomenon.Also we study effective diffusion processes over surfaces due to random walks in the bulk.We consider different boundary conditions and transitions movements.We derive expressions that describe diffusion behaviors constrained to bulk restrictions and the dynamic of the particles.Finally it is important to mention that the theoretical results obtained from the models proposed in this work are compared with Monte Carlo simulations.We find, in general, excellent agreements between the theory and the simulations

  10. Optimal information diffusion in stochastic block models.

    Science.gov (United States)

    Curato, Gianbiagio; Lillo, Fabrizio

    2016-09-01

    We use the linear threshold model to study the diffusion of information on a network generated by the stochastic block model. We focus our analysis on a two-community structure where the initial set of informed nodes lies only in one of the two communities and we look for optimal network structures, i.e., those maximizing the asymptotic extent of the diffusion. We find that, constraining the mean degree and the fraction of initially informed nodes, the optimal structure can be assortative (modular), core-periphery, or even disassortative. We then look for minimal cost structures, i.e., those for which a minimal fraction of initially informed nodes is needed to trigger a global cascade. We find that the optimal networks are assortative but with a structure very close to a core-periphery graph, i.e., a very dense community linked to a much more sparsely connected periphery.

  11. Comment on "Advective transport in heterogeneous aquifers: Are proxy models predictive?" by A. Fiori, A. Zarlenga, H. Gotovac, I. Jankovic, E. Volpi, V. Cvetkovic, and G. Dagan

    Science.gov (United States)

    Neuman, Shlomo P.

    2016-07-01

    Fiori et al. (2015) examine the predictive capabilities of (among others) two "proxy" non-Fickian transport models, MRMT (Multi-Rate Mass Transfer) and CTRW (Continuous-Time Random Walk). In particular, they compare proxy model predictions of mean breakthrough curves (BTCs) at a sequence of control planes with near-ergodic BTCs generated through two- and three-dimensional simulations of nonreactive, mean-uniform advective transport in single realizations of stationary, randomly heterogeneous porous media. The authors find fitted proxy model parameters to be nonunique and devoid of clear physical meaning. This notwithstanding, they conclude optimistically that "i. Fitting the proxy models to match the BTC at [one control plane] automatically ensures prediction at downstream control planes [and thus] ii. … the measured BTC can be used directly for prediction, with no need to use models underlain by fitting." I show that (a) the authors' findings follow directly from (and thus confirm) theoretical considerations discussed earlier by Neuman and Tartakovsky (2009), which (b) additionally demonstrate that proxy models will lack similar predictive capabilities under more realistic, non-Markovian flow and transport conditions that prevail under flow through nonstationary (e.g., multiscale) media in the presence of boundaries and/or nonuniformly distributed sources, and/or when flow/transport are conditioned on measurements.

  12. Modeling the reemergence of information diffusion in social network

    Science.gov (United States)

    Yang, Dingda; Liao, Xiangwen; Shen, Huawei; Cheng, Xueqi; Chen, Guolong

    2018-01-01

    Information diffusion in networks is an important research topic in various fields. Existing studies either focus on modeling the process of information diffusion, e.g., independent cascade model and linear threshold model, or investigate information diffusion in networks with certain structural characteristics such as scale-free networks and small world networks. However, there are still several phenomena that have not been captured by existing information diffusion models. One of the prominent phenomena is the reemergence of information diffusion, i.e., a piece of information reemerges after the completion of its initial diffusion process. In this paper, we propose an optimized information diffusion model by introducing a new informed state into traditional susceptible-infected-removed model. We verify the proposed model via simulations in real-world social networks, and the results indicate that the model can reproduce the reemergence of information during the diffusion process.

  13. Fast multigrid solution of the advection problem with closed characteristics

    Energy Technology Data Exchange (ETDEWEB)

    Yavneh, I. [Israel Inst. of Technology, Haifa (Israel); Venner, C.H. [Univ. of Twente, Enschede (Netherlands); Brandt, A. [Weizmann Inst. of Science, Rehovot (Israel)

    1996-12-31

    The numerical solution of the advection-diffusion problem in the inviscid limit with closed characteristics is studied as a prelude to an efficient high Reynolds-number flow solver. It is demonstrated by a heuristic analysis and numerical calculations that using upstream discretization with downstream relaxation-ordering and appropriate residual weighting in a simple multigrid V cycle produces an efficient solution process. We also derive upstream finite-difference approximations to the advection operator, whose truncation terms approximate {open_quotes}physical{close_quotes} (Laplacian) viscosity, thus avoiding spurious solutions to the homogeneous problem when the artificial diffusivity dominates the physical viscosity.

  14. Anomalous diffusion in a symbolic model

    International Nuclear Information System (INIS)

    Ribeiro, H V; Lenzi, E K; Mendes, R S; Santoro, P A

    2011-01-01

    In this work, we investigate some statistical properties of symbolic sequences generated by a numerical procedure in which the symbols are repeated following the power-law probability density. In this analysis, we consider that the sum of n symbols represents the position of a particle in erratic movement. This approach reveals a rich diffusive scenario characterized by non-Gaussian distribution and, depending on the power-law exponent or the procedure used to build the walker, we may have superdiffusion, subdiffusion or usual diffusion. Additionally, we use the continuous-time random walk framework to compare the analytic results with the numerical data, thereby finding good agreement. Because of its simplicity and flexibility, this model can be a candidate for describing real systems governed by power-law probability densities.

  15. Comparison of the performance of traditional advection-dispersion equation and mobile-immobile model for simulating solute transport in heterogeneous soils

    Directory of Open Access Journals (Sweden)

    Haizhu HU,Xiaomin MAO

    2016-09-01

    Full Text Available The traditional advection-dispersion equation (ADE and the mobile-immobile model (MIM are widely used to describe solute transport in heterogeneous porous media. However, the fitness of the two models is case-dependent. In this paper, the transport of conservative, adsorbing and degradable solutes through a 1 m heterogeneous soil column under steady flow condition was simulated by ADE and MIM, and sensitivity analysis was conducted. Results show that MIM tends to prolong the breakthrough process and decrease peak concentration for all three solutes, and tailing and skewness are more pronounced with increasing dispersivity. Breakthrough curves of the adsorbing solute simulated by MIM are less sensitive to the retardation factor compared with the results simulated by ADE. The breakthrough curves of degradable solute obtained by MIM and ADE nearly overlap with a high degradation rate coefficient, indicating that MIM and ADE perform similarly for simulating degradable solute transport when biochemical degradation prevails over the mass exchange between mobile and immobile zones. The results suggest that the physical significance of dispersivity should be carefully considered when MIM is applied to simulate the degradable solute transport and/or ADE is applied to simulate the adsorbing solute transport in highly dispersive soils.

  16. Reaction-diffusion pulses: a combustion model

    International Nuclear Information System (INIS)

    Campos, Daniel; Llebot, Josep Enric; Fort, Joaquim

    2004-01-01

    We focus on a reaction-diffusion approach proposed recently for experiments on combustion processes, where the heat released by combustion follows first-order reaction kinetics. This case allows us to perform an exhaustive analytical study. Specifically, we obtain the exact expressions for the speed of the thermal pulses, their maximum temperature and the condition of self-sustenance. Finally, we propose two generalizations of the model, namely, the case of several reactants burning together, and that of time-delayed heat conduction. We find an excellent agreement between our analytical results and simulations

  17. Implicit coupling of turbulent diffusion with chemical reaction mechanisms for prognostic atmospheric dispersion models

    Energy Technology Data Exchange (ETDEWEB)

    Berlowitz, D.R.

    1996-11-01

    In the last few decades the negative impact by humans on the thin atmospheric layer enveloping the earth, the basis for life on this planet, has increased steadily. In order to halt, or at least slow down this development, the knowledge and study of these anthropogenic influence has to be increased and possible remedies have to be suggested. An important tool for these studies are computer models. With their help the atmospheric system can be approximated and the various processes, which have led to the current situation can be quantified. They also serve as an instrument to assess short or medium term strategies to reduce this human impact. However, to assure efficiency as well as accuracy, a careful analysis of the numerous processes involved in the dispersion of pollutants in the atmosphere is called for. This should help to concentrate on the essentials and also prevent excessive usage of sometimes scarce computing resources. The basis of the presented work is the EUMAC Zooming Model (ETM), and particularly the component calculating the dispersion of pollutants in the atmosphere, the model MARS. The model has two main parts: an explicit solver, where the advection and the horizontal diffusion of pollutants are calculated, and an implicit solution mechanism, allowing the joint computation of the change of concentration due to chemical reactions, coupled with the respective influence of the vertical diffusion of the species. The aim of this thesis is to determine particularly the influence of the horizontal components of the turbulent diffusion on the existing implicit solver of the model. Suggestions for a more comprehensive inclusion of the full three dimensional diffusion operator in the implicit solver are made. This is achieved by an appropriate operator splitting. A selection of numerical approaches to tighten the coupling of the diffusion processes with the calculation of the applied chemical reaction mechanisms are examined. (author) figs., tabs., refs.

  18. iCFD: Interpreted Computational Fluid Dynamics - Degeneration of CFD to one-dimensional advection-dispersion models using statistical experimental design - The secondary clarifier.

    Science.gov (United States)

    Guyonvarch, Estelle; Ramin, Elham; Kulahci, Murat; Plósz, Benedek Gy

    2015-10-15

    The present study aims at using statistically designed computational fluid dynamics (CFD) simulations as numerical experiments for the identification of one-dimensional (1-D) advection-dispersion models - computationally light tools, used e.g., as sub-models in systems analysis. The objective is to develop a new 1-D framework, referred to as interpreted CFD (iCFD) models, in which statistical meta-models are used to calculate the pseudo-dispersion coefficient (D) as a function of design and flow boundary conditions. The method - presented in a straightforward and transparent way - is illustrated using the example of a circular secondary settling tank (SST). First, the significant design and flow factors are screened out by applying the statistical method of two-level fractional factorial design of experiments. Second, based on the number of significant factors identified through the factor screening study and system understanding, 50 different sets of design and flow conditions are selected using Latin Hypercube Sampling (LHS). The boundary condition sets are imposed on a 2-D axi-symmetrical CFD simulation model of the SST. In the framework, to degenerate the 2-D model structure, CFD model outputs are approximated by the 1-D model through the calibration of three different model structures for D. Correlation equations for the D parameter then are identified as a function of the selected design and flow boundary conditions (meta-models), and their accuracy is evaluated against D values estimated in each numerical experiment. The evaluation and validation of the iCFD model structure is carried out using scenario simulation results obtained with parameters sampled from the corners of the LHS experimental region. For the studied SST, additional iCFD model development was carried out in terms of (i) assessing different density current sub-models; (ii) implementation of a combined flocculation, hindered, transient and compression settling velocity function; and (iii

  19. Accurate Simulation of Transient Landscape Evolution by Eliminating Numerical Diffusion: The TTLEM 1.0 Model

    Science.gov (United States)

    Govers, G.; Campforts, B.; Schwanghart, W.

    2016-12-01

    Landscape evolution models (LEM) allow studying the earth surface response to a changing climatic and tectonic forcing. While much effort has been devoted to the development of LEMs that simulate a wide range of processes, the numerical accuracy of these models has received much less attention. Most LEMs use first order accurate numerical methods that suffer from substantial numerical diffusion. Numerical diffusion particularly affects the solution of the advection equation and thus the simulation of retreating landforms such as cliffs and river knickpoints with potential unquantified consequences for the integrated response of the simulated landscape. Here we present TTLEM, a spatially explicit, raster based LEM for the study of fluvially eroding landscapes in TopoToolbox 2. TTLEM prevents numerical diffusion by implementing a higher order flux limiting total volume method that is total variation diminishing (TVD-TVM) and solves the partial differential equations of river incision and tectonic displacement. We show that the choice of the TVD-TVM to simulate river incision significantly influences the evolution of simulated landscapes and the spatial and temporal variability of catchment wide erosion rates. Furthermore, a 2D TVD-TVM accurately simulates the evolution of landscapes affected by lateral tectonic displacement, a process whose simulation is hitherto largely limited to LEMs with flexible spatial discretization. By providing accurate numerical schemes on rectangular grids, TTLEM is a widely accessible LEM that is compatible with GIS analysis functions from the TopoToolbox interface. The model code can be downloaded at: https://github.com/wschwanghart/topotoolbox

  20. Influence of diffusive porosity architecture on kinetically-controlled reactions in mobile-immobile models

    Science.gov (United States)

    Babey, T.; Ginn, T. R.; De Dreuzy, J. R.

    2014-12-01

    Solute transport in porous media may be structured at various scales by geological features, from connectivity patterns of pores to fracture networks. This structure impacts solute repartition and consequently reactivity. Here we study numerically the influence of the organization of porous volumes within diffusive porosity zones on different reactions. We couple a mobile-immobile transport model where an advective zone exchanges with diffusive zones of variable structure to the geochemical modeling software PHREEQC. We focus on two kinetically-controlled reactions, a linear sorption and a nonlinear dissolution of a mineral. We show that in both cases the structure of the immobile zones has an important impact on the overall reaction rates. Through the Multi-Rate Mass Transfer (MRMT) framework, we show that this impact is very well captured by residence times-based models for the kinetic linear sorption, as it is mathematically equivalent to a modification of the initial diffusive structure; Consequently, the overall reaction rate could be easily extrapolated from a conservative tracer experiment. The MRMT models however struggle to reproduce the non-linearity and the threshold effects associated with the kinetic dissolution. A slower reaction, by allowing more time for diffusion to smooth out the concentration gradients, tends to increase their relevance. Figure: Left: Representation of a mobile-immobile model with a complex immobile architecture. The mobile zone is indicated by an arrow. Right: Total remaining mass of mineral in mobile-immobile models and in their equivalent MRMT models during a flush by a highly under-saturated solution. The models only differ by the organization of their immobile porous volumes.

  1. Accounting for diffusion in agent based models of reaction-diffusion systems with application to cytoskeletal diffusion.

    Science.gov (United States)

    Azimi, Mohammad; Jamali, Yousef; Mofrad, Mohammad R K

    2011-01-01

    Diffusion plays a key role in many biochemical reaction systems seen in nature. Scenarios where diffusion behavior is critical can be seen in the cell and subcellular compartments where molecular crowding limits the interaction between particles. We investigate the application of a computational method for modeling the diffusion of molecules and macromolecules in three-dimensional solutions using agent based modeling. This method allows for realistic modeling of a system of particles with different properties such as size, diffusion coefficients, and affinity as well as the environment properties such as viscosity and geometry. Simulations using these movement probabilities yield behavior that mimics natural diffusion. Using this modeling framework, we simulate the effects of molecular crowding on effective diffusion and have validated the results of our model using Langevin dynamics simulations and note that they are in good agreement with previous experimental data. Furthermore, we investigate an extension of this framework where single discrete cells can contain multiple particles of varying size in an effort to highlight errors that can arise from discretization that lead to the unnatural behavior of particles undergoing diffusion. Subsequently, we explore various algorithms that differ in how they handle the movement of multiple particles per cell and suggest an algorithm that properly accommodates multiple particles of various sizes per cell that can replicate the natural behavior of these particles diffusing. Finally, we use the present modeling framework to investigate the effect of structural geometry on the directionality of diffusion in the cell cytoskeleton with the observation that parallel orientation in the structural geometry of actin filaments of filopodia and the branched structure of lamellipodia can give directionality to diffusion at the filopodia-lamellipodia interface.

  2. Diffusion model for fluidized-bed drying.

    Science.gov (United States)

    Zoglio, M A; Streng, W H; Carstensen, J T

    1975-11-01

    A sucrose-lactose-starch granulation was used to study particulate motion and attrition in a fluid bed dryer. There is some classification of material in the dryer as drying proceeds; fine particles are dried faster and become less dense, and the less dry but denser large particles show some (although not great) accumulation tendencies in the lower central area. Unlike countercurrent rotary drying, fluid bed drying cannot be accounted for by water diffusion inside the granule as the rate-limiting step. In its place, a model of external water vapor diffusion is proposed and is supported by vapor-concentration curves and by the linear dependence of the rate constants on the linear air velocities. The dried granulation exhibits the same trend as does countercurrent dried material in that larger particles have higher moisture contents than do smaller particles. Quantitative relationships between content of moisture and size were developed and are supported by experimental data. The granulation, upon storage, does not equilibrate, indicating that this type of water distribution is a problem in batch process granulations as well as in the earlier reported case of granulations for continuous production.

  3. A numerical treatment of geodynamic viscous flow problems involving the advection of material interfaces

    Science.gov (United States)

    Lenardic, A.; Kaula, W. M.

    1993-01-01

    Effective numerical treatment of multicomponent viscous flow problems involving the advection of sharp interfaces between materials of differing physical properties requires correction techniques to prevent spurious diffusion and dispersion. We develop a particular algorithm, based on modern shock-capture techniques, employing a two-step nonlinear method. The first step involves the global application of a high-order upwind scheme to a hyperbolic advection equation used to model the distribution of distinct material components in a flow field. The second step is corrective and involves the application of a global filter designed to remove dispersion errors that result from the advection of discontinuities (e.g., material interfaces) by high-order, minimally dissipative schemes. The filter introduces no additional diffusion error. Nonuniform viscosity across a material interface is allowed for by the implementation of a compositionally weighted-inverse interface viscosity scheme. The combined method approaches the optimal accuracy of modern shock-capture techniques with a minimal increase in computational time and memory. A key advantage of this method is its simplicity to incorporate into preexisting codes be they finite difference, element, or volume of two or three dimensions.

  4. Circumnutation modeled by reaction-diffusion equations

    Energy Technology Data Exchange (ETDEWEB)

    Lubkin, S.R.

    1992-01-01

    In studies of biological oscillators, plants are only rarely examined. The authors study a common sub-diurnal oscillation of plants, called circumnutation. Based on experimental evidence that the oscillations consist of a turgor wave traveling around a growing plant part, circumnutation is modeled by a nonlinear reaction-diffusion system with cylindrical geometry. Because of its simplicity, and because biological oscillations are so common, an oscillatory [lambda]-[omega] reaction-diffusion system is chosen for the model. The authors study behavior of traveling waves in [lambda]-[omega] systems. The authors show the existence of Hopf bifurcations and the stability of the limit cycles born at the Hopf bifurcation for some parameter values. Using a Lindstedt-type perturbation scheme, the authors construct periodic solutions of the [lambda]-[omega] system near a Hopf bifurcation and show that the periodic solutions superimposed on the original traveling wave have the effect of altering its overall frequency and amplitude. Circumnutating plants generally display a strong directional preference to their oscillations, which is species-dependent. Circumnutation is modeled by a [lambda]-[omega] system on an annulus of variable width, which does not possess reflection symmetry about any axis. The annulus represents a region of high potassium concentration in the cross-section of the stem. The asymmetry of the annulus represents the anatomical asymmetry of the plant. Traveling waves are constructed on this variable-width annulus by a perturbation scheme, and perturbing the width of the annulus alters the amplitude and frequency of traveling waves on the domain by a small (order [epsilon][sup 2]) amount. The speed, frequency, and stability are unaffected by the direction of travel of the wave on the annulus. This indicates that the [lambda]-[omega] system on a variable-width domain cannot account for directional preferences of traveling waves in biological systems.

  5. The streamline upwind Petrov-Galerkin stabilising method for the numerical solution of highly advective problems

    Directory of Open Access Journals (Sweden)

    Carlos Humberto Galeano Urueña

    2009-05-01

    Full Text Available This article describes the streamline upwind Petrov-Galerkin (SUPG method as being a stabilisation technique for resolving the diffusion-advection-reaction equation by finite elements. The first part of this article has a short analysis of the importance of this type of differential equation in modelling physical phenomena in multiple fields. A one-dimensional description of the SUPG me- thod is then given to extend this basis to two and three dimensions. The outcome of a strongly advective and a high numerical complexity experiment is presented. The results show how the version of the implemented SUPG technique allowed stabilised approaches in space, even for high Peclet numbers. Additional graphs of the numerical experiments presented here can be downloaded from www.gnum.unal.edu.co.

  6. Extending the diffusion approximation to the boundary using an integrated diffusion model

    Energy Technology Data Exchange (ETDEWEB)

    Chen, Chen; Du, Zhidong; Pan, Liang, E-mail: liangpan@purdue.edu [School of Mechanical Engineering, Birck Nanotechnology Center, Purdue University, West Lafayette, Indiana 47907 (United States)

    2015-06-15

    The widely used diffusion approximation is inaccurate to describe the transport behaviors near surfaces and interfaces. To solve such stochastic processes, an integro-differential equation, such as the Boltzmann transport equation (BTE), is typically required. In this work, we show that it is possible to keep the simplicity of the diffusion approximation by introducing a nonlocal source term and a spatially varying diffusion coefficient. We apply the proposed integrated diffusion model (IDM) to a benchmark problem of heat conduction across a thin film to demonstrate its feasibility. We also validate the model when boundary reflections and uniform internal heat generation are present.

  7. Extending the diffusion approximation to the boundary using an integrated diffusion model

    Directory of Open Access Journals (Sweden)

    Chen Chen

    2015-06-01

    Full Text Available The widely used diffusion approximation is inaccurate to describe the transport behaviors near surfaces and interfaces. To solve such stochastic processes, an integro-differential equation, such as the Boltzmann transport equation (BTE, is typically required. In this work, we show that it is possible to keep the simplicity of the diffusion approximation by introducing a nonlocal source term and a spatially varying diffusion coefficient. We apply the proposed integrated diffusion model (IDM to a benchmark problem of heat conduction across a thin film to demonstrate its feasibility. We also validate the model when boundary reflections and uniform internal heat generation are present.

  8. Modeling dendrite density from magnetic resonance diffusion measurements

    DEFF Research Database (Denmark)

    Jespersen, Sune Nørhøj; Kroenke, CD; Østergaard, Leif

    2007-01-01

    Diffusion-weighted imaging (DWI) provides a noninvasive tool to probe tissue microstructure. We propose a simplified model of neural cytoarchitecture intended to capture the essential features important for water diffusion as measured by NMR. Two components contribute to the NMR signal in this mo......Diffusion-weighted imaging (DWI) provides a noninvasive tool to probe tissue microstructure. We propose a simplified model of neural cytoarchitecture intended to capture the essential features important for water diffusion as measured by NMR. Two components contribute to the NMR signal...... in this model: (i) the dendrites and axons, which are modeled as long cylinders with two diffusion coefficients, parallel (DL) and perpendicular (DT) to the cylindrical axis, and (ii) an isotropic monoexponential diffusion component describing water diffusion within and across all other structures, i...

  9. A diffusivity model for predicting VOC diffusion in porous building materials based on fractal theory

    International Nuclear Information System (INIS)

    Liu, Yanfeng; Zhou, Xiaojun; Wang, Dengjia; Song, Cong; Liu, Jiaping

    2015-01-01

    Highlights: • Fractal theory is introduced into the prediction of VOC diffusion coefficient. • MSFC model of the diffusion coefficient is developed for porous building materials. • The MSFC model contains detailed pore structure parameters. • The accuracy of the MSFC model is verified by independent experiments. - Abstract: Most building materials are porous media, and the internal diffusion coefficients of such materials have an important influences on the emission characteristics of volatile organic compounds (VOCs). The pore structure of porous building materials has a significant impact on the diffusion coefficient. However, the complex structural characteristics bring great difficulties to the model development. The existing prediction models of the diffusion coefficient are flawed and need to be improved. Using scanning electron microscope (SEM) observations and mercury intrusion porosimetry (MIP) tests of typical porous building materials, this study developed a new diffusivity model: the multistage series-connection fractal capillary-bundle (MSFC) model. The model considers the variable-diameter capillaries formed by macropores connected in series as the main mass transfer paths, and the diameter distribution of the capillary bundles obeys a fractal power law in the cross section. In addition, the tortuosity of the macrocapillary segments with different diameters is obtained by the fractal theory. Mesopores serve as the connections between the macrocapillary segments rather than as the main mass transfer paths. The theoretical results obtained using the MSFC model yielded a highly accurate prediction of the diffusion coefficients and were in a good agreement with the VOC concentration measurements in the environmental test chamber.

  10. A diffusivity model for predicting VOC diffusion in porous building materials based on fractal theory

    Energy Technology Data Exchange (ETDEWEB)

    Liu, Yanfeng, E-mail: lyfxjd@163.com; Zhou, Xiaojun; Wang, Dengjia; Song, Cong; Liu, Jiaping

    2015-12-15

    Highlights: • Fractal theory is introduced into the prediction of VOC diffusion coefficient. • MSFC model of the diffusion coefficient is developed for porous building materials. • The MSFC model contains detailed pore structure parameters. • The accuracy of the MSFC model is verified by independent experiments. - Abstract: Most building materials are porous media, and the internal diffusion coefficients of such materials have an important influences on the emission characteristics of volatile organic compounds (VOCs). The pore structure of porous building materials has a significant impact on the diffusion coefficient. However, the complex structural characteristics bring great difficulties to the model development. The existing prediction models of the diffusion coefficient are flawed and need to be improved. Using scanning electron microscope (SEM) observations and mercury intrusion porosimetry (MIP) tests of typical porous building materials, this study developed a new diffusivity model: the multistage series-connection fractal capillary-bundle (MSFC) model. The model considers the variable-diameter capillaries formed by macropores connected in series as the main mass transfer paths, and the diameter distribution of the capillary bundles obeys a fractal power law in the cross section. In addition, the tortuosity of the macrocapillary segments with different diameters is obtained by the fractal theory. Mesopores serve as the connections between the macrocapillary segments rather than as the main mass transfer paths. The theoretical results obtained using the MSFC model yielded a highly accurate prediction of the diffusion coefficients and were in a good agreement with the VOC concentration measurements in the environmental test chamber.

  11. Predicting salt advection in groundwater from saline aquaculture ponds

    Science.gov (United States)

    Verrall, D. P.; Read, W. W.; Narayan, K. A.

    2009-01-01

    SummaryThis paper predicts saltwater advection in groundwater from leaky aquaculture ponds. A closed form solution for the potential function, stream function and velocity field is derived via the series solutions method. Numerically integrating along different streamlines gives the location (or advection front) of saltwater throughout the domain for any predefined upper time limit. Extending this process produces a function which predicts advection front location against time. The models considered in this paper are easily modified given knowledge of the required physical parameters.

  12. A new model of anomalous phosphorus diffusion in silicon

    International Nuclear Information System (INIS)

    Budil, M.; Poetzl, H.; Stingeder, G.; Grasserbauer, M.

    1989-01-01

    A model is presented to describe the 'kink and tail' diffusion of phosphorus. The diffusion behaviour of phosphorus is expplained by the motion of phosphorus-interstitial and phosphorus-vacancy pairs in different charge states. The model yields the enhancement of diffusion in the tail region depending on surface concentration. Furthermore it yields the same selfdiffusion coefficient for interstitials as the gold diffusion experiments. A transformation of the diffusion equation was found to reduce the number of simulation equations. (author) 7 refs., 5 figs

  13. Magnetic resonance advection imaging of cerebrovascular pulse dynamics.

    Science.gov (United States)

    Voss, Henning U; Dyke, Jonathan P; Tabelow, Karsten; Schiff, Nicholas D; Ballon, Douglas J

    2017-04-01

    We analyze the pulsatile signal component of dynamic echo planar imaging data from the brain by modeling the dependence between local temporal and spatial signal variability. The resulting magnetic resonance advection imaging maps depict the location of major arteries. Color direction maps allow for visualization of the direction of blood vessels. The potential significance of magnetic resonance advection imaging maps is demonstrated on a functional magnetic resonance imaging data set of 19 healthy subjects. A comparison with the here introduced pulse coherence maps, in which the echo planar imaging signal is correlated with a cardiac pulse signal, shows that the magnetic resonance advection imaging approach results in a better spatial definition without the need for a pulse reference. In addition, it is shown that magnetic resonance advection imaging velocities can be estimates of pulse wave velocities if certain requirements are met, which are specified. Although for this application magnetic resonance advection imaging velocities are not quantitative estimates of pulse wave velocities, they clearly depict local pulsatile dynamics. Magnetic resonance advection imaging can be applied to existing dynamic echo planar imaging data sets with sufficient spatiotemporal resolution. It is discussed whether magnetic resonance advection imaging might have the potential to evolve into a biomarker for the health of the cerebrovascular system.

  14. Matrix diffusion model. In situ tests using natural analogues

    International Nuclear Information System (INIS)

    Rasilainen, K.

    1997-11-01

    Matrix diffusion is an important retarding and dispersing mechanism for substances carried by groundwater in fractured bedrock. Natural analogues provide, unlike laboratory or field experiments, a possibility to test the model of matrix diffusion in situ over long periods of time. This thesis documents quantitative model tests against in situ observations, done to support modelling of matrix diffusion in performance assessments of nuclear waste repositories

  15. Matrix diffusion model. In situ tests using natural analogues

    Energy Technology Data Exchange (ETDEWEB)

    Rasilainen, K. [VTT Energy, Espoo (Finland)

    1997-11-01

    Matrix diffusion is an important retarding and dispersing mechanism for substances carried by groundwater in fractured bedrock. Natural analogues provide, unlike laboratory or field experiments, a possibility to test the model of matrix diffusion in situ over long periods of time. This thesis documents quantitative model tests against in situ observations, done to support modelling of matrix diffusion in performance assessments of nuclear waste repositories. 98 refs. The thesis includes also eight previous publications by author.

  16. Sedimentary radioactive tracers and diffusive models

    International Nuclear Information System (INIS)

    Carroll, J.; Lerche, I.

    2010-01-01

    This paper examines the underlying assumptions and consequences of applying a steady-state equation to sediment profiles of radioactive tracers in order to deconvolute sedimentation from bioturbation processes modelled as a diffusive type process. Several factors follow immediately from this investigation: (i)if the observed radioactive concentration increases with depth over any finite depth range then the proposed steady-state, constant flux equation is not applicable. Any increase in radioactive concentration with depth implies a negative mixing coefficient which is a physical impossibility; (ii)when the radioactive concentration systematically decreases with increasing sedimentary depth then solutions to the steady-state conservation equation exist only when either the constant solid state flux to the sediment surface is small enough so that a positive mixing coefficient results or when the mixing coefficient is small enough so that a positive flux results. If the radioactive concentration, porosity and/or density of the solid phase are such that the proposed equation is inappropriate (because no physically acceptable solution exists) then one must abandon the proposed steady-state equation. Further: if the flux of solid sediment to the sediment surface varies with time then, of course, a steady-state conservation equation is also inappropriate. Simple examples illustrate that the assumption of steady-state restricts the applicability of this modelling approach to a relatively small sub-set of expected situations in the real world.

  17. Diffusion models in metamorphic thermo chronology: philosophy and methods

    International Nuclear Information System (INIS)

    Munha, Jose Manuel; Tassinari, Colombo Celso Gaeta

    1999-01-01

    Understanding kinetics of diffusion is of major importance to the interpretation of isotopic ages in metamorphic rocks. This paper provides a review of concepts and methodologies involved on the various diffusion models that can be applied to radiogenic systems in cooling rocks. The central concept of closure temperature is critically discussed and quantitative estimates for the various diffusion models are evaluated, in order to illustrate the controlling factors and the limits of their practical application. (author)

  18. Modelling Nanoparticle Diffusion into Cancer Tumors

    Science.gov (United States)

    Podduturi, Vishwa Priya; Derosa, Pedro

    2011-03-01

    Cancer is one of the major, potentially deadly diseases and has been for years. Non-specific delivery of the drug can damage healthy tissue seriously affecting in many cases the patient's living condition. Nanoparticles are being used for a targeted drug delivery thereby reducing the dose. In addition, metallic nanoparticles are being used in thermal treatment of cancer cells where nanoparticles help concentrate heat in the tumor and away from living tissue. We proposed a model that combines random walk with diffusion principles. The particle drift velocity is taken from the Hagen-Poiseuille equation and the velocity profile of the particle at the pores in the capillary wall is obtained using the Coventorware software. Pressure gradient and concentration gradient through the capillary wall are considered. Simulations are performed in Matlab using the Monte Carlo technique. Number of particles leaving the blood vessel through a pore is obtained as a function of blood pressure, the osmotic pressure, temperature, particle concentration, blood vessel radius, and pore size, and the relative effect of each of the parameters is discussed.

  19. Diffuse radiation models and monthly-average, daily, diffuse data for a wide latitude range

    International Nuclear Information System (INIS)

    Gopinathan, K.K.; Soler, A.

    1995-01-01

    Several years of measured data on global and diffuse radiation and sunshine duration for 40 widely spread locations in the latitude range 36° S to 60° N are used to develop and test models for estimating monthly-mean, daily, diffuse radiation on horizontal surfaces. Applicability of the clearness-index (K) and sunshine fraction (SSO) models for diffuse estimation and the effect of combining several variables into a single multilinear equation are tested. Correlations connecting the diffuse to global fraction (HdH) with K and SSO predict Hd values more accurately than their separate use. Among clearness-index and sunshine-fraction models, SSO models are found to have better accuracy if correlations are developed for wide latitude ranges. By including a term for declinations in the correlation, the accuracy of the estimated data can be marginally improved. The addition of latitude to the equation does not help to improve the accuracy further. (author)

  20. A variable-order fractal derivative model for anomalous diffusion

    Directory of Open Access Journals (Sweden)

    Liu Xiaoting

    2017-01-01

    Full Text Available This paper pays attention to develop a variable-order fractal derivative model for anomalous diffusion. Previous investigations have indicated that the medium structure, fractal dimension or porosity may change with time or space during solute transport processes, results in time or spatial dependent anomalous diffusion phenomena. Hereby, this study makes an attempt to introduce a variable-order fractal derivative diffusion model, in which the index of fractal derivative depends on temporal moment or spatial position, to characterize the above mentioned anomalous diffusion (or transport processes. Compared with other models, the main advantages in description and the physical explanation of new model are explored by numerical simulation. Further discussions on the dissimilitude such as computational efficiency, diffusion behavior and heavy tail phenomena of the new model and variable-order fractional derivative model are also offered.

  1. Radon diffusion through multilayer earthen covers: models and simulations

    Energy Technology Data Exchange (ETDEWEB)

    Mayer, D.W.; Oster, C.A.; Nelson, R.W.; Gee, G.W.

    1981-09-01

    A capability to model and analyze the fundamental interactions that influence the diffusion of radon gas through uranium mill tailings and cover systems has been investigated. The purpose of this study is to develop the theoretical basis for modeling radon diffusion and to develop an understanding of the fundamental interactions that influence radon diffusion. This study develops the theoretical basis for modeling radon diffusion in one, two and three dimensions. The theory has been incorporated into three computer models that are used to analyze several tailings and cover configurations. This report contains a discussion of the theoretical basis for modeling radon diffusion, a discussion of the computer models used to analyze uranium mill tailings and multilayered cover systems, and presents the results that have been obtained.

  2. Identify source location and release time for pollutants undergoing super-diffusion and decay: Parameter analysis and model evaluation

    Science.gov (United States)

    Zhang, Yong; Sun, HongGuang; Lu, Bingqing; Garrard, Rhiannon; Neupauer, Roseanna M.

    2017-09-01

    Backward models have been applied for four decades by hydrologists to identify the source of pollutants undergoing Fickian diffusion, while analytical tools are not available for source identification of super-diffusive pollutants undergoing decay. This technical note evaluates analytical solutions for the source location and release time of a decaying contaminant undergoing super-diffusion using backward probability density functions (PDFs), where the forward model is the space fractional advection-dispersion equation with decay. Revisit of the well-known MADE-2 tracer test using parameter analysis shows that the peak backward location PDF can predict the tritium source location, while the peak backward travel time PDF underestimates the tracer release time due to the early arrival of tracer particles at the detection well in the maximally skewed, super-diffusive transport. In addition, the first-order decay adds additional skewness toward earlier arrival times in backward travel time PDFs, resulting in a younger release time, although this impact is minimized at the MADE-2 site due to tritium's half-life being relatively longer than the monitoring period. The main conclusion is that, while non-trivial backward techniques are required to identify pollutant source location, the pollutant release time can and should be directly estimated given the speed of the peak resident concentration for super-diffusive pollutants with or without decay.

  3. Likelihood functions for state space models with diffuse initial conditions

    NARCIS (Netherlands)

    Koopman, S.J.; Shephard, N.; de Vos, A.F.

    2010-01-01

    State space models with non-stationary processes and/or fixed regression effects require a state vector with diffuse initial conditions. Different likelihood functions can be adopted for the estimation of parameters in time-series models with diffuse initial conditions. In this article, we consider

  4. Likelihood functions for state space models with diffuse initial conditions

    NARCIS (Netherlands)

    Francke, M.K.; Koopmans, S.J.; de Vos, A.F.

    2008-01-01

    State space models with nonstationary processes and fixed regression effects require a state vector with diffuse initial conditions. Different likelihood functions can be adopted for the estimation of parameters in time series models with diffuse initial conditions. In this paper we consider

  5. Some Problems in Using Diffusion Models for New Products.

    Science.gov (United States)

    Bernhardt, Irwin; Mackenzie, Kenneth D.

    This paper analyzes some of the problems of using diffusion models to formulate marketing strategies for new products. Though future work in this area appears justified, many unresolved problems limit its application. There is no theory for adoption and diffusion processes; such a theory is outlined in this paper. The present models are too…

  6. One-dimensional diffusion model in an Inhomogeneous region

    CSIR Research Space (South Africa)

    Fedotov, I

    2006-01-01

    Full Text Available A one-dimensional model is developed to describe atomic diffusion in a graphite tube atomizer for electrothermal atomic adsorption spectrometry. The underlying idea of the model is the solution of an inhomogeneous one-dimensional diffusion equation...

  7. Diffusive Barrier and Getter Under Waste Packages VA Reference Design Feature Evaluations

    Energy Technology Data Exchange (ETDEWEB)

    MacNeil, K.

    1999-05-24

    This technical document evaluates those aspects of the diffusive barrier and getter features which have the potential for enhancing the performance of the Viability Assessment Reference Design and are also directly related to the key attributes for the repository safety strategy of that design. The effects of advection, hydrodynamic dispersion, and diffusion on the radionuclide migration rates through the diffusive barrier were determined through the application of the one-dimensional, advection/dispersion/diffusion equation. The results showed that because advective flow described by the advection-dispersion equation dominates, the diffusive barrier feature alone would not be effective in retarding migration of radiocuclides. However, if the diffusive barrier were combined with one or more features that reduced the potential for advection, then transport of radionuclides would be dominated by diffusion and their migration from the EBS would be impeded. Apatite was chosen as the getter material used for this report. Two getter configurations were developed, Case 1 and Case 2. As in the evaluation of the diffusive barrier, the effects of advection, hydrodynamic dispersion, and diffusion on the migration of radionuclides through the getter are evaluated. However, in addition to these mechanisms, the one-dimensional advection/dispersion/diffusion model is modified to include the effect of sorption on radionuclide migration rates through the sorptive medium (getter). As a result of sorption, the longitudinal dispersion coefficient, and the average linear velocity are effectively reduced by the retardation factor. The retardation factor is a function of the getter material's dry bulk density, sorption coefficient and moisture content. The results of the evaluation showed that a significant delay in breakthrough through the getter can be achieved if the thickness of the getter barrier is increased.

  8. Lévy flight with absorption: A model for diffusing diffusivity with long tails

    Science.gov (United States)

    Jain, Rohit; Sebastian, K. L.

    2017-03-01

    We consider diffusion of a particle in rearranging environment, so that the diffusivity of the particle is a stochastic function of time. In our previous model of "diffusing diffusivity" [Jain and Sebastian, J. Phys. Chem. B 120, 3988 (2016), 10.1021/acs.jpcb.6b01527], it was shown that the mean square displacement of particle remains Fickian, i.e., ∝T at all times, but the probability distribution of particle displacement is not Gaussian at all times. It is exponential at short times and crosses over to become Gaussian only in a large time limit in the case where the distribution of D in that model has a steady state limit which is exponential, i.e., πe(D ) ˜e-D /D0 . In the present study, we model the diffusivity of a particle as a Lévy flight process so that D has a power-law tailed distribution, viz., πe(D ) ˜D-1 -α with 0 <α <1 . We find that in the short time limit, the width of displacement distribution is proportional to √{T }, implying that the diffusion is Fickian. But for long times, the width is proportional to T1 /2 α which is a characteristic of anomalous diffusion. The distribution function for the displacement of the particle is found to be a symmetric stable distribution with a stability index 2 α which preserves its shape at all times.

  9. Asymptotic solutions of diffusion models for risk reserves

    Directory of Open Access Journals (Sweden)

    S. Shao

    2003-01-01

    Full Text Available We study a family of diffusion models for risk reserves which account for the investment income earned and for the inflation experienced on claim amounts. After we defined the process of the conditional probability of ruin over finite time and imposed the appropriate boundary conditions, classical results from the theory of diffusion processes turn the stochastic differential equation to a special class of initial and boundary value problems defined by a linear diffusion equation. Armed with asymptotic analysis and perturbation theory, we obtain the asymptotic solutions of the diffusion models (possibly degenerate governing the conditional probability of ruin over a finite time in terms of interest rate.

  10. Dynamic hysteresis modeling including skin effect using diffusion equation model

    Energy Technology Data Exchange (ETDEWEB)

    Hamada, Souad, E-mail: souadhamada@yahoo.fr [LSP-IE: Research Laboratory, Electrical Engineering Department, University of Batna, 05000 Batna (Algeria); Louai, Fatima Zohra, E-mail: fz_louai@yahoo.com [LSP-IE: Research Laboratory, Electrical Engineering Department, University of Batna, 05000 Batna (Algeria); Nait-Said, Nasreddine, E-mail: n_naitsaid@yahoo.com [LSP-IE: Research Laboratory, Electrical Engineering Department, University of Batna, 05000 Batna (Algeria); Benabou, Abdelkader, E-mail: Abdelkader.Benabou@univ-lille1.fr [L2EP, Université de Lille1, 59655 Villeneuve d’Ascq (France)

    2016-07-15

    An improved dynamic hysteresis model is proposed for the prediction of hysteresis loop of electrical steel up to mean frequencies, taking into account the skin effect. In previous works, the analytical solution of the diffusion equation for low frequency (DELF) was coupled with the inverse static Jiles-Atherton (JA) model in order to represent the hysteresis behavior for a lamination. In the present paper, this approach is improved to ensure the reproducibility of measured hysteresis loops at mean frequency. The results of simulation are compared with the experimental ones. The selected results for frequencies 50 Hz, 100 Hz, 200 Hz and 400 Hz are presented and discussed.

  11. A fractional motion diffusion model for grading pediatric brain tumors.

    Science.gov (United States)

    Karaman, M Muge; Wang, He; Sui, Yi; Engelhard, Herbert H; Li, Yuhua; Zhou, Xiaohong Joe

    2016-01-01

    To demonstrate the feasibility of a novel fractional motion (FM) diffusion model for distinguishing low- versus high-grade pediatric brain tumors; and to investigate its possible advantage over apparent diffusion coefficient (ADC) and/or a previously reported continuous-time random-walk (CTRW) diffusion model. With approval from the institutional review board and written informed consents from the legal guardians of all participating patients, this study involved 70 children with histopathologically-proven brain tumors (30 low-grade and 40 high-grade). Multi- b -value diffusion images were acquired and analyzed using the FM, CTRW, and mono-exponential diffusion models. The FM parameters, D fm , φ , ψ (non-Gaussian diffusion statistical measures), and the CTRW parameters, D m , α , β (non-Gaussian temporal and spatial diffusion heterogeneity measures) were compared between the low- and high-grade tumor groups by using a Mann-Whitney-Wilcoxon U test. The performance of the FM model for differentiating between low- and high-grade tumors was evaluated and compared with that of the CTRW and the mono-exponential models using a receiver operating characteristic (ROC) analysis. The FM parameters were significantly lower ( p  CTRW model. Similar to the CTRW model, the FM model can improve differentiation between low- and high-grade pediatric brain tumors over ADC.

  12. A diffusivity model for predicting VOC diffusion in porous building materials based on fractal theory.

    Science.gov (United States)

    Liu, Yanfeng; Zhou, Xiaojun; Wang, Dengjia; Song, Cong; Liu, Jiaping

    2015-12-15

    Most building materials are porous media, and the internal diffusion coefficients of such materials have an important influences on the emission characteristics of volatile organic compounds (VOCs). The pore structure of porous building materials has a significant impact on the diffusion coefficient. However, the complex structural characteristics bring great difficulties to the model development. The existing prediction models of the diffusion coefficient are flawed and need to be improved. Using scanning electron microscope (SEM) observations and mercury intrusion porosimetry (MIP) tests of typical porous building materials, this study developed a new diffusivity model: the multistage series-connection fractal capillary-bundle (MSFC) model. The model considers the variable-diameter capillaries formed by macropores connected in series as the main mass transfer paths, and the diameter distribution of the capillary bundles obeys a fractal power law in the cross section. In addition, the tortuosity of the macrocapillary segments with different diameters is obtained by the fractal theory. Mesopores serve as the connections between the macrocapillary segments rather than as the main mass transfer paths. The theoretical results obtained using the MSFC model yielded a highly accurate prediction of the diffusion coefficients and were in a good agreement with the VOC concentration measurements in the environmental test chamber. Copyright © 2015 Elsevier B.V. All rights reserved.

  13. Modeling complex diffusion mechanisms in L12-structured compounds

    International Nuclear Information System (INIS)

    Zacate, M. O.; Lape, M.; Stufflebeam, M.; Evenson, W. E.

    2010-01-01

    We report on a procedure developed to create stochastic models of hyperfine interactions for complex diffusion mechanisms and demonstrate its application to simulate perturbed angular correlation spectra for the divacancy and 6-jump cycle diffusion mechanisms in L1 2 -structured compounds.

  14. Modeling complex diffusion mechanisms in L1 2 -structured compounds

    Science.gov (United States)

    Zacate, M. O.; Lape, M.; Stufflebeam, M.; Evenson, W. E.

    2010-04-01

    We report on a procedure developed to create stochastic models of hyperfine interactions for complex diffusion mechanisms and demonstrate its application to simulate perturbed angular correlation spectra for the divacancy and 6-jump cycle diffusion mechanisms in L12-structured compounds.

  15. Simple Brownian diffusion an introduction to the standard theoretical models

    CERN Document Server

    Gillespie, Daniel T

    2013-01-01

    Brownian diffusion, the motion of large molecules in a sea of very many much smaller molecules, is topical because it is one of the ways in which biologically important molecules move about inside living cells. This book presents the mathematical physics that underlies the four simplest models of Brownian diffusion.

  16. A transformation approach to modeling multi-modal diffusions

    DEFF Research Database (Denmark)

    Forman, Julie Lyng; Sørensen, Michael

    2014-01-01

    of the underlying simple diffusion including its mixing rates and distributions of first passage times. Likelihood inference and martingale estimating functions are considered in the case of a discretely observed bimodal diffusion. It is further demonstrated that model parameters can be identified and estimated...

  17. Wind Power in Europe. A Simultaneous Innovation-Diffusion Model

    International Nuclear Information System (INIS)

    Soederholm, P.; Klaassen, G.

    2007-01-01

    The purpose of this paper is to provide a quantitative analysis of innovation and diffusion in the European wind power sector. We derive a simultaneous model of wind power innovation and diffusion, which combines a rational choice model of technological diffusion and a learning curve model of dynamic cost reductions. These models are estimated using pooled annual time series data for four European countries (Denmark, Germany, Spain and the United Kingdom) over the time period 1986-2000. The empirical results indicate that reductions in investment costs have been important determinants of increased diffusion of wind power, and these cost reductions can in turn be explained by learning activities and public R and D support. Feed-in tariffs also play an important role in the innovation and diffusion processes. The higher the feed-in price the higher, ceteris paribus, the rate of diffusion, and we present some preliminary empirical support for the notion that the impact on diffusion of a marginal increase in the feed-in tariff will differ depending on the support system used. High feed-in tariffs, though, also have a negative effect on cost reductions as they induce wind generators to choose high-cost sites and provide fewer incentives for cost cuts. This illustrates the importance of designing an efficient wind energy support system, which not only promotes diffusion but also provides continuous incentives for cost-reducing innovations

  18. Diffusion and sorption on hardened cement pastes - experiments and modelling results

    Energy Technology Data Exchange (ETDEWEB)

    Jakob, A.; Sarott, F.-A.; Spieler, P.

    1999-08-01

    Large parts of repositories for low and intermediate level radioactive waste consist of cementitious materials. Radionuclides are transported by diffusion in the cement matrix or, in case of fractured or highly permeable cement, by advection and dispersion. In this work we aim at a mechanistic understanding of diffusion processes of some reactive tracers. On the laboratory scale, ten through-diffusion experiments were performed to study these processes for Cl{sup -}, I{sup -}, Cs{sup +} and Ni{sup 2+} ions in a Sulphate Resisting Portland Cement (SRPC) equilibrated with an artificial pore water. Some of the experiments continued up to nearly three years with daily measurements. In all the experiments, a cement disk initially saturated with an artificial pore water was exposed on one side to a highly diluted solution containing the species of interest. On the second side, a near-zero concentration boundary was maintained to drive through-diffusion of the tracer. The changes of concentrations on both sides of the samples were monitored, allowing careful mass balances. From these data, values of the diffusive flux and the mass of tracer taken up by the cementitious material were determined as a function of time. In the subsequent modelling, the time histories of these tracer breakthroughs were fitted using five different models. The simplest model neglects all retarding mechanisms except pure diffusion. More complex models either account for instantaneous equilibrium sorption in form of linear or non-linear (Freundlich) sorption or for first-order sorption kinetics where the forward reaction may be linear or non-linear according to the Freundlich isotherm, while the back-reaction is linear. Hence, the analysis allows the extraction of the diffusion coefficient and parameter values for the sorption isotherm or rate-constants for sorption and desorption. The fits to the experimental data were carried out by an automated Marquardt-Levenberg procedure yielding error

  19. CROSS DIFFUSION AND NONLINEAR DIFFUSION PREVENTING BLOW UP IN THE KELLER–SEGEL MODEL

    KAUST Repository

    CARRILLO, JOSÉ ANTONIO

    2012-12-01

    A parabolic-parabolic (Patlak-)Keller-Segel model in up to three space dimensions with nonlinear cell diffusion and an additional nonlinear cross-diffusion term is analyzed. The main feature of this model is that there exists a new entropy functional, yielding gradient estimates for the cell density and chemical concentration. For arbitrarily small cross-diffusion coefficients and for suitable exponents of the nonlinear diffusion terms, the global-in-time existence of weak solutions is proved, thus preventing finite-time blow up of the cell density. The global existence result also holds for linear and fast diffusion of the cell density in a certain parameter range in three dimensions. Furthermore, we show L∞ bounds for the solutions to the parabolic-elliptic system. Sufficient conditions leading to the asymptotic stability of the constant steady state are given for a particular choice of the nonlinear diffusion exponents. Numerical experiments in two and three space dimensions illustrate the theoretical results. © 2012 World Scientific Publishing Company.

  20. A Reduced Model for Salt-Finger Convection in the Small Diffusivity Ratio Limit

    Directory of Open Access Journals (Sweden)

    Jin-Han Xie

    2017-01-01

    Full Text Available A simple model of nonlinear salt-finger convection in two dimensions is derived and studied. The model is valid in the limit of a small solute to heat diffusivity ratio and a large density ratio, which is relevant to both oceanographic and astrophysical applications. Two limits distinguished by the magnitude of the Schmidt number are found. For order one Schmidt numbers, appropriate for astrophysical applications, a modified Rayleigh–Bénard system with large-scale damping due to a stabilizing temperature is obtained. For large Schmidt numbers, appropriate for the oceanic setting, the model combines a prognostic equation for the solute field and a diagnostic equation for inertia-free momentum dynamics. Two distinct saturation regimes are identified for the second model: the weakly driven regime is characterized by a large-scale flow associated with a balance between advection and linear instability, while the strongly-driven regime produces multiscale structures, resulting in a balance between energy input through linear instability and energy transfer between scales. For both regimes, we analytically predict and numerically confirm the dependence of the kinetic energy and salinity fluxes on the ratio between solutal and thermal Rayleigh numbers. The spectra and probability density functions are also computed.

  1. Pricing Participating Products under a Generalized Jump-Diffusion Model

    Directory of Open Access Journals (Sweden)

    Tak Kuen Siu

    2008-01-01

    Full Text Available We propose a model for valuing participating life insurance products under a generalized jump-diffusion model with a Markov-switching compensator. It also nests a number of important and popular models in finance, including the classes of jump-diffusion models and Markovian regime-switching models. The Esscher transform is employed to determine an equivalent martingale measure. Simulation experiments are conducted to illustrate the practical implementation of the model and to highlight some features that can be obtained from our model.

  2. WWER radial reflector modeling by diffusion codes

    International Nuclear Information System (INIS)

    Petkov, P. T.; Mittag, S.

    2005-01-01

    The two commonly used approaches to describe the WWER radial reflectors in diffusion codes, by albedo on the core-reflector boundary and by a ring of diffusive assembly size nodes, are discussed. The advantages and disadvantages of the first approach are presented first, then the Koebke's equivalence theory is outlined and its implementation for the WWER radial reflectors is discussed. Results for the WWER-1000 reactor are presented. Then the boundary conditions on the outer reflector boundary are discussed. The possibility to divide the library into fuel assembly and reflector parts and to generate each library by a separate code package is discussed. Finally, the homogenization errors for rodded assemblies are presented and discussed (Author)

  3. Diffusion model for ultrasound-modulated light.

    Science.gov (United States)

    Hollmann, Joseph L; Horstmeyer, Roarke; Yang, Changhuei; DiMarzio, Charles A

    2014-03-01

    Researchers use ultrasound (US) to modulate diffusive light in a highly scattering medium like tissue. This paper analyzes the US-optical interaction in the scattering medium and derives an expression for the US-modulated optical radiance. The diffusion approximation to the radiative transport equation is employed to develop a Green's function for US-modulated light. The predicted modulated fluence and flux are verified using finite-difference time-domain simulations. The Green's function is then utilized to illustrate the modulated reflectance as the US-optical interaction increases in depth. The intent of this paper is to focus on high US frequencies necessary for high-resolution imaging because they are of interest for applications such as phase conjugation.

  4. Dynamic Diffusion Estimation in Exponential Family Models

    Czech Academy of Sciences Publication Activity Database

    Dedecius, Kamil; Sečkárová, Vladimíra

    2013-01-01

    Roč. 20, č. 11 (2013), s. 1114-1117 ISSN 1070-9908 R&D Projects: GA MŠk 7D12004; GA ČR GA13-13502S Keywords : diffusion estimation * distributed estimation * paremeter estimation Subject RIV: BB - Applied Statistics, Operational Research Impact factor: 1.639, year: 2013 http://library.utia.cas.cz/separaty/2013/AS/dedecius-0396518.pdf

  5. A computational method for sharp interface advection

    Science.gov (United States)

    Bredmose, Henrik; Jasak, Hrvoje

    2016-01-01

    We devise a numerical method for passive advection of a surface, such as the interface between two incompressible fluids, across a computational mesh. The method is called isoAdvector, and is developed for general meshes consisting of arbitrary polyhedral cells. The algorithm is based on the volume of fluid (VOF) idea of calculating the volume of one of the fluids transported across the mesh faces during a time step. The novelty of the isoAdvector concept consists of two parts. First, we exploit an isosurface concept for modelling the interface inside cells in a geometric surface reconstruction step. Second, from the reconstructed surface, we model the motion of the face–interface intersection line for a general polygonal face to obtain the time evolution within a time step of the submerged face area. Integrating this submerged area over the time step leads to an accurate estimate for the total volume of fluid transported across the face. The method was tested on simple two-dimensional and three-dimensional interface advection problems on both structured and unstructured meshes. The results are very satisfactory in terms of volume conservation, boundedness, surface sharpness and efficiency. The isoAdvector method was implemented as an OpenFOAM® extension and is published as open source. PMID:28018619

  6. Modeling experimental stable isotope results from CO2 adsorption and diffusion experiments

    Science.gov (United States)

    Larson, T. E.

    2012-12-01

    Transport of carbon dioxide through porous media can be affected by diffusion, advection and adsorption processes. Developing new tools to understand which of these processes dominates migration of CO2 or other gases in the subsurface is important to a wide range of applications including CO2 storage. Whereas advection rates are not affected by isotope substitution in CO2, adsorption and diffusion constants are. For example, differences in the binary diffusion constant calculated between C12O2-He and C13O2-He results in a carbon isotope fractionation whereby the front of the chromatographic peak is enriched in carbon-12 and the tail of the peak is enriched in carbon-13. Interestingly, adsorption is shown to have an opposite, apparent inverse affect whereby the lighter isotopologues of CO2 are preferentially retained by the chromatographic column and the heavier isotopologues are eluted first. This apparent inverse chromatographic effect has been ascribed to Van der Waals dispersion forces. Smaller molar volumes of the heavier isotopologues resulting from increased bond strength (shorter bond length) effectively decreases Van der Waals forces in heavier isotopologues compared to lighter isotopologues. Here we discuss the possible application of stable isotope values measured across chromatographic peaks to differentiate diffusion-dominated from adsorption-dominated transport processes for CO2. Separate 1-dimensional flow-through columns were packed with quartz and illite, and one remained empty. Dry helium was used as a carrier gas. Constant flow rate, temperature and column pressure were maintained. After background CO2 concentrations were minimized and constant, a sustained pulse of CO2 was injected at the head of the column and the effluent was sampled at 4 minute intervals for CO2 concentration, and carbon and oxygen isotope ratios. The quartz-sand packed and empty columns resulted in similar trends in concentration and isotope ratios whereby CO2 concentrations

  7. Accelerated diffusion controlled creep of polycrystalline materials. Communication 1. Model of diffusion controlled creep acceleration

    International Nuclear Information System (INIS)

    Smirnova, E.S.; Chuvil'deev, V.N.

    1998-01-01

    The model is suggested which describes the influence of large-angle grain boundary migration on a diffusion controlled creep rate in polycrystalline materials (Coble creep). The model is based on the concept about changing the value of migrating boundary free volume when introducing dislocations distributed over the grain bulk into this boundary. Expressions are obtained to calculate the grain boundary diffusion coefficient under conditions of boundary migration and the parameter, which characterized the value of Coble creep acceleration. A comparison is made between calculated and experimental data for Cd, Co and Fe

  8. Integrating Models of Diffusion and Behavior to Predict Innovation Adoption, Maintenance, and Social Diffusion.

    Science.gov (United States)

    Smith, Rachel A; Kim, Youllee; Zhu, Xun; Doudou, Dimi Théodore; Sternberg, Eleanore D; Thomas, Matthew B

    2018-01-01

    This study documents an investigation into the adoption and diffusion of eave tubes, a novel mosquito vector control, during a large-scale scientific field trial in West Africa. The diffusion of innovations (DOI) and the integrated model of behavior (IMB) were integrated (i.e., innovation attributes with attitudes and social pressures with norms) to predict participants' (N = 329) diffusion intentions. The findings showed that positive attitudes about the innovation's attributes were a consistent positive predictor of diffusion intentions: adopting it, maintaining it, and talking with others about it. As expected by the DOI and the IMB, the social pressure created by a descriptive norm positively predicted intentions to adopt and maintain the innovation. Drawing upon sharing research, we argued that the descriptive norm may dampen future talk about the innovation, because it may no longer be seen as a novel, useful topic to discuss. As predicted, the results showed that as the descriptive norm increased, the intention to talk about the innovation decreased. These results provide broad support for integrating the DOI and the IMB to predict diffusion and for efforts to draw on other research to understand motivations for social diffusion.

  9. Diffuse Scattering Model of Indoor Wideband Propagation

    DEFF Research Database (Denmark)

    Franek, Ondrej; Andersen, Jørgen Bach; Pedersen, Gert Frølund

    2011-01-01

    This paper presents a discrete-time numerical algorithm for computing field distribution in indoor environment by diffuse scattering from walls. Calculations are performed for a rectangular room with semi-reflective walls. The walls are divided into 0.5 x 0.5 m segments, resulting in 2272 wall...... intensity in all locations eventually follows exponential decay with the same slope and approximately the same level for given delay. These observations are shown to be in good agreement with theory and previous measurements—the slopes of the decay curves for measurement, simulation and theory are found...

  10. Extrusion analysis of buffer using diffusion model

    International Nuclear Information System (INIS)

    Sugino, H.; Kanno, T.

    1999-11-01

    The buffer material that will be buried as a component of the engineered barriers system swells when saturation by groundwater. As a result of this swelling, buffer material may penetrate into the peripheral rock zone surrounding the buffer through open fractures. If sustained for extremely in long-period of time. The buffer material extrusion could lead to reduction of buffer density, which may in turn degrade the assumed performance assessment properties (e.g., permeability, diffusion coefficient). JNC has been conducted the study of bentonite extrusion into fractures of rock mass as a part of high level waste research. In 1997, JNC has reported the test results concerning buffer material extrusion and buffer material erosion. These tests have been done using test facilities in Geological Isolation Basic Research Facility. After 1997, JNC also conducted analytical study of buffer material extrusion. This report describes the analysis results of this study which are reflected to the H12 report. In this analysis, the diffusion coefficient was derived as a function of the swelling pressure and the viscosity resistance of the buffer materials. Thus, the reduction in density of buffer materials after emplacement in saturated rock was assessed. The assessment was made assuming parallel-plate radial fractures initially filled by water only. Because fractures in natural rock masses inevitably have mineral inclusions inside of them and fractures orientation leads to fractures intersecting other fractures, this analysis gives significantly conservative conditions with respect to long-term extrusion of buffer and possible decrease in buffer density. (author)

  11. Evaluation of the Thermodynamic Models for the Thermal Diffusion Factor

    DEFF Research Database (Denmark)

    Gonzalez-Bagnoli, Mariana G.; Shapiro, Alexander; Stenby, Erling Halfdan

    2003-01-01

    Over the years, several thermodynamic models for the thermal diffusion factors for binary mixtures have been proposed. The goal of this paper is to test some of these models in combination with different equations of state. We tested the following models: those proposed by Rutherford and Drickamer...... we applied different thermodynamic models, such as the Soave-Redlich-Kwong and the Peng-Robinson equations of state. The necessity to try different thermo-dynamic models is caused by the high sensitivity of the thermal diffusion factors to the values of the partial molar properties. Two different...

  12. Verification of atmospheric diffusion models using data of long term atmospheric diffusion experiments

    International Nuclear Information System (INIS)

    Tamura, Junji; Kido, Hiroko; Hato, Shinji; Homma, Toshimitsu

    2009-03-01

    Straight-line or segmented plume models as atmospheric diffusion models are commonly used in probabilistic accident consequence assessment (PCA) codes due to cost and time savings. The PCA code, OSCAAR developed by Japan Atomic Energy Research Institute (Present; Japan Atomic Energy Agency) uses the variable puff trajectory model to calculate atmospheric transport and dispersion of released radionuclides. In order to investigate uncertainties involved with the structure of the atmospheric dispersion/deposition model in OSCAAR, we have introduced the more sophisticated computer codes that included regional meteorological models RAMS and atmospheric transport model HYPACT, which were developed by Colorado State University, and comparative analyses between OSCAAR and RAMS/HYPACT have been performed. In this study, model verification of OSCAAR and RAMS/HYPACT was conducted using data of long term atmospheric diffusion experiments, which were carried out in Tokai-mura, Ibaraki-ken. The predictions by models and the results of the atmospheric diffusion experiments indicated relatively good agreements. And it was shown that model performance of OSCAAR was the same degree as it of RAMS/HYPACT. (author)

  13. Catchment Models and Management Tools for diffuse Contaminants (Sediment, Phosphorus and Pesticides): DIFFUSE Project

    Science.gov (United States)

    Mockler, Eva; Reaney, Simeon; Mellander, Per-Erik; Wade, Andrew; Collins, Adrian; Arheimer, Berit; Bruen, Michael

    2017-04-01

    The agricultural sector is the most common suspected source of nutrient pollution in Irish rivers. However, it is also often the most difficult source to characterise due to its predominantly diffuse nature. Particulate phosphorus in surface water and dissolved phosphorus in groundwater are of particular concern in Irish water bodies. Hence the further development of models and indices to assess diffuse sources of contaminants are required for use by the Irish Environmental Protection Agency (EPA) to provide support for river basin planning. Understanding connectivity in the landscape is a vital component of characterising the source-pathway-receptor relationships for water-borne contaminants, and hence is a priority in this research. The DIFFUSE Project will focus on connectivity modelling and incorporation of connectivity into sediment, nutrient and pesticide risk mapping. The Irish approach to understanding and managing natural water bodies has developed substantially in recent years assisted by outputs from multiple research projects, including modelling and analysis tools developed during the Pathways and CatchmentTools projects. These include the Pollution Impact Potential (PIP) maps, which are an example of research output that is used by the EPA to support catchment management. The PIP maps integrate an understanding of the pollution pressures and mobilisation pathways and, using the source-pathways-receptor model, provide a scientific basis for evaluation of mitigation measures. These maps indicate the potential risk posed by nitrate and phosphate from diffuse agricultural sources to surface and groundwater receptors and delineate critical source areas (CSAs) as a means of facilitating the targeting of mitigation measures. Building on this previous research, the DIFFUSE Project will develop revised and new catchment managements tools focused on connectivity, sediment, phosphorus and pesticides. The DIFFUSE project will strive to identify the state

  14. Theory of advection-driven long range biotic transport

    Science.gov (United States)

    We propose a simple mechanistic model to examine the effects of advective flow on the spread of fungal diseases spread by wind-blown spores. The model is defined by a set of two coupled non-linear partial differential equations for spore densities. One equation describes the long-distance advectiv...

  15. Flux-limited diffusion models in radiation hydrodynamics

    International Nuclear Information System (INIS)

    Pomraning, G.C.; Szilard, R.H.

    1993-01-01

    The authors discuss certain flux-limited diffusion theories which approximately describe radiative transfer in the presence of steep spatial gradients. A new formulation is presented which generalizes a flux-limited description currently in widespread use for large radiation hydrodynamic calculations. This new formation allows more than one Case discrete mode to be described by a flux-limited diffusion equation. Such behavior is not extant in existing formulations. Numerical results predicted by these flux-limited diffusion models are presented for radiation penetration into an initially cold halfspace. 37 refs., 5 figs

  16. Weak diffusion limits of dynamic conditional correlation models

    DEFF Research Database (Denmark)

    Hafner, Christian M.; Laurent, Sebastien; Violante, Francesco

    by a diffusion matrix of reduced rank. The degeneracy is due to perfect collinearity between the innovations of the volatility and correlation dynamics. For the special case of constant conditional correlations, a non-degenerate diffusion limit can be obtained. Alternative sets of conditions are considered......The properties of dynamic conditional correlation (DCC) models are still not entirely understood. This paper fills one of the gaps by deriving weak diffusion limits of a modified version of the classical DCC model. The limiting system of stochastic differential equations is characterized...... for the rate of convergence of the parameters, obtaining time-varying but deterministic variances and/or correlations. A Monte Carlo experiment confirms that the quasi approximate maximum likelihood (QAML) method to estimate the diffusion parameters is inconsistent for any fixed frequency, but that it may...

  17. Convergence of surface diffusion parameters with model crystal size

    Science.gov (United States)

    Cohen, Jennifer M.; Voter, Arthur F.

    1994-07-01

    A study of the variation in the calculated quantities for adatom diffusion with respect to the size of the model crystal is presented. The reported quantities include surface diffusion barrier heights, pre-exponential factors, and dynamical correction factors. Embedded atom method (EAM) potentials were used throughout this effort. Both the layer size and the depth of the crystal were found to influence the values of the Arrhenius factors significantly. In particular, exchange type mechanisms required a significantly larger model than standard hopping mechanisms to determine adatom diffusion barriers of equivalent accuracy. The dynamical events that govern the corrections to transition state theory (TST) did not appear to be as sensitive to crystal depth. Suitable criteria for the convergence of the diffusion parameters with regard to the rate properties are illustrated.

  18. Differentiating transpiration from evaporation in seasonal agricultural wetlands and the link to advective fluxes in the root zone

    Science.gov (United States)

    Bachand, P.A.M.; S. Bachand,; Fleck, Jacob A.; Anderson, Frank E.; Windham-Myers, Lisamarie

    2014-01-01

    The current state of science and engineering related to analyzing wetlands overlooks the importance of transpiration and risks data misinterpretation. In response, we developed hydrologic and mass budgets for agricultural wetlands using electrical conductivity (EC) as a natural conservative tracer. We developed simple differential equations that quantify evaporation and transpiration rates using flowrates and tracer concentrations atwetland inflows and outflows. We used two ideal reactormodel solutions, a continuous flowstirred tank reactor (CFSTR) and a plug flow reactor (PFR), to bracket real non-ideal systems. From those models, estimated transpiration ranged from 55% (CFSTR) to 74% (PFR) of total evapotranspiration (ET) rates, consistent with published values using standard methods and direct measurements. The PFR model more appropriately represents these nonideal agricultural wetlands in which check ponds are in series. Using a fluxmodel, we also developed an equation delineating the root zone depth at which diffusive dominated fluxes transition to advective dominated fluxes. This relationship is similar to the Peclet number that identifies the dominance of advective or diffusive fluxes in surface and groundwater transport. Using diffusion coefficients for inorganic mercury (Hg) and methylmercury (MeHg) we calculated that during high ET periods typical of summer, advective fluxes dominate root zone transport except in the top millimeters below the sediment–water interface. The transition depth has diel and seasonal trends, tracking those of ET. Neglecting this pathway has profound implications: misallocating loads along different hydrologic pathways; misinterpreting seasonal and diel water quality trends; confounding Fick's First Law calculations when determining diffusion fluxes using pore water concentration data; and misinterpreting biogeochemicalmechanisms affecting dissolved constituent cycling in the root zone. In addition,our understanding of internal

  19. Diffusion of actinides in glasses containing model radioactive wastes

    International Nuclear Information System (INIS)

    Ivanov, I.A.; Sedov, V.M.; Gulin, A.N.; Shatkov, V.M.; Shashukov, E.A.

    1990-01-01

    Diffusion coefficients of 237 Np, 239 Pu and 241 Am radionuclides in two model alumophosphate and alumoborosilicate glasses at the temperatures, somewhat lower than their transformation temperature, were determined. It is ascertained that actinides are one of the least mobile elements. It is shown that the glass crystallization results in the increase of 237 Np diffusion mobility. Low enough amount of water absorbed by crystallized alumophosphate glass intensifies low-temperature migration of 237 Np

  20. Chaotic advection at large Péclet number: Electromagnetically driven experiments, numerical simulations, and theoretical predictions

    Energy Technology Data Exchange (ETDEWEB)

    Figueroa, Aldo [Facultad de Ciencias, Universidad Autónoma del Estado de Morelos, Cuernavaca, Morelos 62209 (Mexico); Meunier, Patrice; Villermaux, Emmanuel [Aix-Marseille Univ., CNRS, Centrale Marseille, IRPHE, Marseille F-13384 (France); Cuevas, Sergio; Ramos, Eduardo [Instituto de Energías Renovables, Universidad Nacional Autónoma de México, A.P. 34, Temixco, Morelos 62580 (Mexico)

    2014-01-15

    We present a combination of experiment, theory, and modelling on laminar mixing at large Péclet number. The flow is produced by oscillating electromagnetic forces in a thin electrolytic fluid layer, leading to oscillating dipoles, quadrupoles, octopoles, and disordered flows. The numerical simulations are based on the Diffusive Strip Method (DSM) which was recently introduced (P. Meunier and E. Villermaux, “The diffusive strip method for scalar mixing in two-dimensions,” J. Fluid Mech. 662, 134–172 (2010)) to solve the advection-diffusion problem by combining Lagrangian techniques and theoretical modelling of the diffusion. Numerical simulations obtained with the DSM are in reasonable agreement with quantitative dye visualization experiments of the scalar fields. A theoretical model based on log-normal Probability Density Functions (PDFs) of stretching factors, characteristic of homogeneous turbulence in the Batchelor regime, allows to predict the PDFs of scalar in agreement with numerical and experimental results. This model also indicates that the PDFs of scalar are asymptotically close to log-normal at late stages, except for the large concentration levels which correspond to low stretching factors.

  1. Cohabitation reaction-diffusion model for virus focal infections

    Science.gov (United States)

    Amor, Daniel R.; Fort, Joaquim

    2014-12-01

    The propagation of virus infection fronts has been typically modeled using a set of classical (noncohabitation) reaction-diffusion equations for interacting species. However, for some single-species systems it has been recently shown that noncohabitation reaction-diffusion equations may lead to unrealistic descriptions. We argue that previous virus infection models also have this limitation, because they assume that a virion can simultaneously reproduce inside a cell and diffuse away from it. For this reason, we build a several-species cohabitation model that does not have this limitation. Furthermore, we perform a sensitivity analysis for the most relevant parameters of the model, and we compare the predicted infection speed with observed data for two different strains of the T7 virus.

  2. RETADD: a Regional Trajectory And Diffusion-Deposition model

    Energy Technology Data Exchange (ETDEWEB)

    Begovich, C. L.; Murphy, B. D.; Nappo, Jr., C. J.

    1978-06-01

    The Regional Trajectory and Diffusion-Deposition Model (RETADD) is based upon a version of the National Oceanic and Atmospheric Administration Air Resources Laboratory's Regional-Continental Scale Transport, Diffusion, and Deposition Model. The FORTRAN IV computer model uses a trajectory analysis technique for estimating the transport and long-range diffusion of material emitted from a point source. The wind trajectory portion of the code uses observed upper air winds to compute the transport of the material. Ground level concentrations and depositions are computed by using the Gaussian plume equation for wind trajectories projected forward in time. Options are included to specify an upper bound for the mixed layer and a chemical decomposition rate for the effluent. The limitations to the technique are discussed, the equations and model are described, and listings of the program, input, and output are included.

  3. Self-similar Gaussian processes for modeling anomalous diffusion

    Science.gov (United States)

    Lim, S. C.; Muniandy, S. V.

    2002-08-01

    We study some Gaussian models for anomalous diffusion, which include the time-rescaled Brownian motion, two types of fractional Brownian motion, and models associated with fractional Brownian motion based on the generalized Langevin equation. Gaussian processes associated with these models satisfy the anomalous diffusion relation which requires the mean-square displacement to vary with tα, 0Brownian motion and time-rescaled Brownian motion all have the same probability distribution function, the Slepian theorem can be used to compare their first passage time distributions, which are different. Finally, in order to model anomalous diffusion with a variable exponent α(t) it is necessary to consider the multifractional extensions of these Gaussian processes.

  4. Modeling the erythemal surface diffuse irradiance fraction for Badajoz, Spain

    Science.gov (United States)

    Sanchez, Guadalupe; Serrano, Antonio; Cancillo, María Luisa

    2017-10-01

    Despite its important role on the human health and numerous biological processes, the diffuse component of the erythemal ultraviolet irradiance (UVER) is scarcely measured at standard radiometric stations and therefore needs to be estimated. This study proposes and compares 10 empirical models to estimate the UVER diffuse fraction. These models are inspired from mathematical expressions originally used to estimate total diffuse fraction, but, in this study, they are applied to the UVER case and tested against experimental measurements. In addition to adapting to the UVER range the various independent variables involved in these models, the total ozone column has been added in order to account for its strong impact on the attenuation of ultraviolet radiation. The proposed models are fitted to experimental measurements and validated against an independent subset. The best-performing model (RAU3) is based on a model proposed by Ruiz-Arias et al. (2010) and shows values of r2 equal to 0.91 and relative root-mean-square error (rRMSE) equal to 6.1 %. The performance achieved by this entirely empirical model is better than those obtained by previous semi-empirical approaches and therefore needs no additional information from other physically based models. This study expands on previous research to the ultraviolet range and provides reliable empirical models to accurately estimate the UVER diffuse fraction.

  5. Modelling and simulation of diffusive processes methods and applications

    CERN Document Server

    Basu, SK

    2014-01-01

    This book addresses the key issues in the modeling and simulation of diffusive processes from a wide spectrum of different applications across a broad range of disciplines. Features: discusses diffusion and molecular transport in living cells and suspended sediment in open channels; examines the modeling of peristaltic transport of nanofluids, and isotachophoretic separation of ionic samples in microfluidics; reviews thermal characterization of non-homogeneous media and scale-dependent porous dispersion resulting from velocity fluctuations; describes the modeling of nitrogen fate and transport

  6. A model of non-Gaussian diffusion in heterogeneous media

    Science.gov (United States)

    Lanoiselée, Yann; Grebenkov, Denis S.

    2018-04-01

    Recent progress in single-particle tracking has shown evidence of the non-Gaussian distribution of displacements in living cells, both near the cellular membrane and inside the cytoskeleton. Similar behavior has also been observed in granular materials, turbulent flows, gels and colloidal suspensions, suggesting that this is a general feature of diffusion in complex media. A possible interpretation of this phenomenon is that a tracer explores a medium with spatio-temporal fluctuations which result in local changes of diffusivity. We propose and investigate an ergodic, easily interpretable model, which implements the concept of diffusing diffusivity. Depending on the parameters, the distribution of displacements can be either flat or peaked at small displacements with an exponential tail at large displacements. We show that the distribution converges slowly to a Gaussian one. We calculate statistical properties, derive the asymptotic behavior and discuss some implications and extensions.

  7. The parton model for the diffusion

    International Nuclear Information System (INIS)

    Ducati, M.B. Gay; Machado, M.V.T.

    1999-01-01

    We analyze the Buchmueller-Hebecker model for diffraction processes, point out its predictions to the diffractive structure function F D(3) 2 (x IP , β,Q 2 ). The break of factorization for the F D93) 2 present in recent H1 data is well described introducing an extra soft (reggeon) contribution as an extension to the model. (author)

  8. A combinatorial model of malware diffusion via bluetooth connections.

    Directory of Open Access Journals (Sweden)

    Stefano Merler

    Full Text Available We outline here the mathematical expression of a diffusion model for cellphones malware transmitted through Bluetooth channels. In particular, we provide the deterministic formula underlying the proposed infection model, in its equivalent recursive (simple but computationally heavy and closed form (more complex but efficiently computable expression.

  9. A combinatorial model of malware diffusion via bluetooth connections.

    Science.gov (United States)

    Merler, Stefano; Jurman, Giuseppe

    2013-01-01

    We outline here the mathematical expression of a diffusion model for cellphones malware transmitted through Bluetooth channels. In particular, we provide the deterministic formula underlying the proposed infection model, in its equivalent recursive (simple but computationally heavy) and closed form (more complex but efficiently computable) expression.

  10. Numerical modelling of swirling diffusive flames

    Directory of Open Access Journals (Sweden)

    Parra-Santos Teresa

    2016-01-01

    Full Text Available Computational Fluid Dynamics has been used to study the mixing and combustion of two confined jets whose setup and operating conditions are those of the benchmark of Roback and Johnson. Numerical model solves 3D transient Navier Stokes for turbulent and reactive flows. Averaged velocity profiles using RNG swirl dominated k-epsilon model have been validated with experimental measurements from other sources for the non reactive case. The combustion model is Probability Density Function. Bearing in mind the annular jet has swirl number over 0.5, a vortex breakdown appears in the axis of the burner. Besides, the sudden expansion with a ratio of 2 in diameter between nozzle exits and the test chamber produces the boundary layer separation with the corresponding torus shape recirculation. Contrasting the mixing and combustion models, the last one produces the reduction of the vortex breakdown.

  11. Modeling and Analysis of Epidemic Diffusion with Population Migration

    Directory of Open Access Journals (Sweden)

    Ming Liu

    2013-01-01

    Full Text Available An improved Susceptible-Infected-Susceptible (SIS epidemic diffusion model with population migration between two cities is modeled. Global stability conditions for both the disease-free equilibrium and the endemic equilibrium are analyzed and proved. The main contribution of this paper is reflected in epidemic modeling and analysis which considers unequal migration rates, and only susceptible individuals can migrate between the two cities. Numerical simulation shows when the epidemic diffusion system is stable, number of infected individuals in one city can reach zero, while the number of infected individuals in the other city is still positive. On the other hand, decreasing population migration in only one city seems not as effective as improving the recovery rate for controlling the epidemic diffusion.

  12. Diffuse solar radiation estimation models for Turkey's big cities

    International Nuclear Information System (INIS)

    Ulgen, Koray; Hepbasli, Arif

    2009-01-01

    A reasonably accurate knowledge of the availability of the solar resource at any place is required by solar engineers, architects, agriculturists, and hydrologists in many applications of solar energy such as solar furnaces, concentrating collectors, and interior illumination of buildings. For this purpose, in the past, various empirical models (or correlations) have been developed in order to estimate the solar radiation around the world. This study deals with diffuse solar radiation estimation models along with statistical test methods used to statistically evaluate their performance. Models used to predict monthly average daily values of diffuse solar radiation are classified in four groups as follows: (i) From the diffuse fraction or cloudness index, function of the clearness index, (ii) From the diffuse fraction or cloudness index, function of the relative sunshine duration or sunshine fraction, (iii) From the diffuse coefficient, function of the clearness index, and (iv) From the diffuse coefficient, function of the relative sunshine duration or sunshine fraction. Empirical correlations are also developed to establish a relationship between the monthly average daily diffuse fraction or cloudness index (K d ) and monthly average daily diffuse coefficient (K dd ) with the monthly average daily clearness index (K T ) and monthly average daily sunshine fraction (S/S o ) for the three big cities by population in Turkey (Istanbul, Ankara and Izmir). Although the global solar radiation on a horizontal surface and sunshine duration has been measured by the Turkish State Meteorological Service (STMS) over all country since 1964, the diffuse solar radiation has not been measured. The eight new models for estimating the monthly average daily diffuse solar radiation on a horizontal surface in three big cites are validated, and thus, the most accurate model is selected for guiding future projects. The new models are then compared with the 32 models available in the

  13. New advection schemes for free surface flows

    International Nuclear Information System (INIS)

    Pavan, Sara

    2016-01-01

    The purpose of this thesis is to build higher order and less diffusive schemes for pollutant transport in shallow water flows or 3D free surface flows. We want robust schemes which respect the main mathematical properties of the advection equation with relatively low numerical diffusion and apply them to environmental industrial applications. Two techniques are tested in this work: a classical finite volume method and a residual distribution technique combined with a finite element method. For both methods we propose a decoupled approach since it is the most advantageous in terms of accuracy and CPU time. Concerning the first technique, a vertex-centred finite volume method is used to solve the augmented shallow water system where the numerical flux is computed through an Harten-Lax-Van Leer-Contact Riemann solver. Starting from this solution, a decoupled approach is formulated and is preferred since it allows to compute with a larger time step the advection of a tracer. This idea was inspired by Audusse, E. and Bristeau, M.O. [13]. The Monotonic Upwind Scheme for Conservation Law, combined with the decoupled approach, is then used for the second order extension in space. The wetting and drying problem is also analysed and a possible solution is presented. In the second case, the shallow water system is entirely solved using the finite element technique and the residual distribution method is applied to the solution of the tracer equation, focusing on the case of time-dependent problems. However, for consistency reasons the resolution of the continuity equation must be considered in the numerical discretization of the tracer. In order to get second order schemes for unsteady cases a predictor-corrector scheme is used in this work. A first order but less diffusive version of the predictor-corrector scheme is also introduced. Moreover, we also present a new locally semi-implicit version of the residual distribution method which, in addition to good properties in

  14. Diffusion approximation of neuronal models revisited

    Czech Academy of Sciences Publication Activity Database

    Čupera, Jakub

    2014-01-01

    Roč. 11, č. 1 (2014), s. 11-25 ISSN 1547-1063. [International Workshop on Neural Coding (NC) /10./. Praha, 02.09.2012-07.09.2012] R&D Projects: GA ČR(CZ) GAP103/11/0282 Institutional support: RVO:67985823 Keywords : stochastic model * neuronal activity * first-passage time Subject RIV: JD - Computer Applications, Robotics Impact factor: 0.840, year: 2014

  15. Diffusion in energy materials: Governing dynamics from atomistic modelling

    Science.gov (United States)

    Parfitt, D.; Kordatos, A.; Filippatos, P. P.; Chroneos, A.

    2017-09-01

    Understanding diffusion in energy materials is critical to optimising the performance of solid oxide fuel cells (SOFCs) and batteries both of which are of great technological interest as they offer high efficiency for cleaner energy conversion and storage. In the present review, we highlight the insights offered by atomistic modelling of the ionic diffusion mechanisms in SOFCs and batteries and how the growing predictive capability of high-throughput modelling, together with our new ability to control compositions and microstructures, will produce advanced materials that are designed rather than chosen for a given application. The first part of the review focuses on the oxygen diffusion mechanisms in cathode and electrolyte materials for SOFCs and in particular, doped ceria and perovskite-related phases with anisotropic structures. The second part focuses on disordered oxides and two-dimensional materials as these are very promising systems for battery applications.

  16. MESOI: an interactive Lagrangian trajectory puff diffusion model

    Energy Technology Data Exchange (ETDEWEB)

    Ramsdell, J.V.; Athey, G.F.

    1981-12-01

    MESOI is an interactive Lagrangian trajectory puff diffusion model based on an earlier model by Start and Wendell at the Air Resources Laboratory Field Office at Idaho Falls, Idaho. Puff trajectories are determined using spatially and temporally varying wind fields. Diffusion in the puffs is computed as a function of distance traveled and atmospheric stability. Exposures are computed at nodes of a 31 by 31 grid. There is also provision for interpolation of short term exposures at off-grid locations. This report discusses: the theoretical bases of the model, the numerical approach used in the model, and the sensitivity and accuracy of the model. It contains a description of the computer program and a listing of the code. MESOI is written in FORTRAN. A companion report (Athey, Allwine and Ramsdell, 1981) contains a user's guide to MESOI and documents utility programs that maintain the data files needed by the model.

  17. Estimation and prediction under local volatility jump-diffusion model

    Science.gov (United States)

    Kim, Namhyoung; Lee, Younhee

    2018-02-01

    Volatility is an important factor in operating a company and managing risk. In the portfolio optimization and risk hedging using the option, the value of the option is evaluated using the volatility model. Various attempts have been made to predict option value. Recent studies have shown that stochastic volatility models and jump-diffusion models reflect stock price movements accurately. However, these models have practical limitations. Combining them with the local volatility model, which is widely used among practitioners, may lead to better performance. In this study, we propose a more effective and efficient method of estimating option prices by combining the local volatility model with the jump-diffusion model and apply it using both artificial and actual market data to evaluate its performance. The calibration process for estimating the jump parameters and local volatility surfaces is divided into three stages. We apply the local volatility model, stochastic volatility model, and local volatility jump-diffusion model estimated by the proposed method to KOSPI 200 index option pricing. The proposed method displays good estimation and prediction performance.

  18. Reaction-diffusion models of decontamination

    DEFF Research Database (Denmark)

    Hjorth, Poul G.

    A contaminant, which also contains a polymer is in the form of droplets on a solid surface. It is to be removed by the action of a decontaminant, which is applied in aqueous solution. The contaminant is only sparingly soluble in water, so the reaction mechanism is that it slowly dissolves...... in the aqueous solution and then is oxidized by the decontaminant. The polymer is insoluble in water, and so builds up near the interface, where its presence can impede the transport of contaminant. In these circumstances, Dstl wish to have mathematical models that give an understanding of the process, and can...

  19. Chaotic advection at the pore scale: Mechanisms, upscaling and implications for macroscopic transport

    Science.gov (United States)

    Lester, D. R.; Trefry, M. G.; Metcalfe, G.

    2016-11-01

    The macroscopic spreading and mixing of solute plumes in saturated porous media is ultimately controlled by processes operating at the pore scale. Whilst the conventional picture of pore-scale mechanical dispersion and molecular diffusion leading to persistent hydrodynamic dispersion is well accepted, this paradigm is inherently two-dimensional (2D) in nature and neglects important three-dimensional (3D) phenomena. We discuss how the kinematics of steady 3D flow at the pore scale generate chaotic advection-involving exponential stretching and folding of fluid elements-the mechanisms by which it arises and implications of microscopic chaos for macroscopic dispersion and mixing. Prohibited in steady 2D flow due to topological constraints, these phenomena are ubiquitous due to the topological complexity inherent to all 3D porous media. Consequently 3D porous media flows generate profoundly different fluid deformation and mixing processes to those of 2D flow. The interplay of chaotic advection and broad transit time distributions can be incorporated into a continuous-time random walk (CTRW) framework to predict macroscopic solute mixing and spreading. We show how these results may be generalised to real porous architectures via a CTRW model of fluid deformation, leading to stochastic models of macroscopic dispersion and mixing which both honour the pore-scale kinematics and are directly conditioned on the pore-scale architecture.

  20. Regularization modeling for large-eddy simulation of diffusion flames

    NARCIS (Netherlands)

    Geurts, Bernardus J.; Wesseling, P.; Oñate, E.; Périaux, J.

    We analyze the evolution of a diffusion flame in a turbulent mixing layer using large-eddy simulation. The large-eddy simulation includes Leray regularization of the convective transport and approximate inverse filtering to represent the chemical source terms. The Leray model is compared to the more

  1. Mathematical models for drug diffusion through the compartments of ...

    African Journals Online (AJOL)

    M.A. Khanday

    2016-07-26

    Jul 26, 2016 ... quadratic shape function.10. Moreover, Khanday and. Najar11,12 established the mathematical models on oxygen transport in biological tissues through capillary bed using both analytical and numerical methods. In this study, we extended the diffusion of drug in blood and tissue using three mathemat-.

  2. Three dimensional simulated modelling of diffusion capacitance of ...

    African Journals Online (AJOL)

    A three dimensional (3-D) simulated modelling was developed to analyse the excess minority carrier density in the base of a polycrystalline bifacial silicon solar cell. The concept of junction recombination velocity was ado-pted to quantify carrier flow through the junction, and to examine the solar cell diffusion capacitance for ...

  3. Analytically solvable models of reaction-diffusion systems

    Energy Technology Data Exchange (ETDEWEB)

    Zemskov, E P; Kassner, K [Institut fuer Theoretische Physik, Otto-von-Guericke-Universitaet, Universitaetsplatz 2, 39106 Magdeburg (Germany)

    2004-05-01

    We consider a class of analytically solvable models of reaction-diffusion systems. An analytical treatment is possible because the nonlinear reaction term is approximated by a piecewise linear function. As particular examples we choose front and pulse solutions to illustrate the matching procedure in the one-dimensional case.

  4. Traveling Wave Solutions in a Reaction-Diffusion Epidemic Model

    OpenAIRE

    Wang, Sheng; Liu, Wenbin; Guo, Zhengguang; Wang, Weiming

    2013-01-01

    We investigate the traveling wave solutions in a reaction-diffusion epidemic model. The existence of the wave solutions is derived through monotone iteration of a pair of classical upper and lower solutions. The traveling wave solutions are shown to be unique and strictly monotonic. Furthermore, we determine the critical minimal wave speed.

  5. Evolution of passive movement in advective environments: General boundary condition

    Science.gov (United States)

    Zhou, Peng; Zhao, Xiao-Qiang

    2018-03-01

    In a previous work [16], Lou et al. studied a Lotka-Volterra competition-diffusion-advection system, where two species are supposed to differ only in their advection rates and the environment is assumed to be spatially homogeneous and closed (no-flux boundary condition), and showed that weaker advective movements are more beneficial for species to win the competition. In this paper, we aim to extend this result to a more general situation, where the environmental heterogeneity is taken into account and the boundary condition at the downstream end becomes very flexible including the standard Dirichlet, Neumann and Robin type conditions as special cases. Our main approaches are to exclude the existence of co-existence (positive) steady state and to provide a clear picture on the stability of semi-trivial steady states, where we introduced new ideas and techniques to overcome the emerging difficulties. Based on these two aspects and the theory of abstract competitive systems, we achieve a complete understanding on the global dynamics.

  6. A rational function based scheme for solving advection equation

    Energy Technology Data Exchange (ETDEWEB)

    Xiao, Feng [Gunma Univ., Kiryu (Japan). Faculty of Engineering; Yabe, Takashi

    1995-07-01

    A numerical scheme for solving advection equations is presented. The scheme is derived from a rational interpolation function. Some properties of the scheme with respect to convex-concave preserving and monotone preserving are discussed. We find that the scheme is attractive in surpressinging overshoots and undershoots even in the vicinities of discontinuity. The scheme can also be easily swicthed as the CIP (Cubic interpolated Pseudo-Particle) method to get a third-order accuracy in smooth region. Numbers of numerical tests are carried out to show the non-oscillatory and less diffusive nature of the scheme. (author).

  7. Modeling Radiation Belt Electron Dynamics with the DREAM3D Diffusion Model

    Energy Technology Data Exchange (ETDEWEB)

    Tu, Weichao [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Cunningham, Gregory S. [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Chen, Yue [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Henderson, Michael G. [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Morley, Steven K. [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Reeves, Geoffrey D. [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Blake, Bernard J. [The Aerospace Corporation, El Segundo, CA (United States); Baker, Daniel N. [Lab. for Atmospheric and Space Physics, Boulder, CO (United States); Spence, Harlan [Univ. of New Hampshire, Durham, NH (United States)

    2014-02-14

    The simulation results from our 3D diffusion model on the CRRES era suggest; our model captures the general variations of radiation belt electrons, including the dropouts and the enhancements; the overestimations inside the plasmapause can be improved by increasing the PA diffusion from hiss waves; and that better DLL and wave models are required.

  8. Image Restoration for Fluorescence Planar Imaging with Diffusion Model

    Directory of Open Access Journals (Sweden)

    Xuanxuan Zhang

    2017-01-01

    Full Text Available Fluorescence planar imaging (FPI is failure to capture high resolution images of deep fluorochromes due to photon diffusion. This paper presents an image restoration method to deal with this kind of blurring. The scheme of this method is conceived based on a reconstruction method in fluorescence molecular tomography (FMT with diffusion model. A new unknown parameter is defined through introducing the first mean value theorem for definite integrals. System matrix converting this unknown parameter to the blurry image is constructed with the elements of depth conversion matrices related to a chosen plane named focal plane. Results of phantom and mouse experiments show that the proposed method is capable of reducing the blurring of FPI image caused by photon diffusion when the depth of focal plane is chosen within a proper interval around the true depth of fluorochrome. This method will be helpful to the estimation of the size of deep fluorochrome.

  9. Macroscopic diffusion models for precipitation in crystalline gallium arsenide

    Energy Technology Data Exchange (ETDEWEB)

    Kimmerle, Sven-Joachim Wolfgang

    2009-09-21

    Based on a thermodynamically consistent model for precipitation in gallium arsenide crystals including surface tension and bulk stresses by Dreyer and Duderstadt, we propose two different mathematical models to describe the size evolution of liquid droplets in a crystalline solid. The first model treats the diffusion-controlled regime of interface motion, while the second model is concerned with the interface-controlled regime of interface motion. Our models take care of conservation of mass and substance. These models generalise the well-known Mullins- Sekerka model for Ostwald ripening. We concentrate on arsenic-rich liquid spherical droplets in a gallium arsenide crystal. Droplets can shrink or grow with time but the centres of droplets remain fixed. The liquid is assumed to be homogeneous in space. Due to different scales for typical distances between droplets and typical radii of liquid droplets we can derive formally so-called mean field models. For a model in the diffusion-controlled regime we prove this limit by homogenisation techniques under plausible assumptions. These mean field models generalise the Lifshitz-Slyozov-Wagner model, which can be derived from the Mullins-Sekerka model rigorously, and is well understood. Mean field models capture the main properties of our system and are well adapted for numerics and further analysis. We determine possible equilibria and discuss their stability. Numerical evidence suggests in which case which one of the two regimes might be appropriate to the experimental situation. (orig.)

  10. Leaky-box approximation to the fractional diffusion model

    International Nuclear Information System (INIS)

    Uchaikin, V V; Sibatov, R T; Saenko, V V

    2013-01-01

    Two models based on fractional differential equations for galactic cosmic ray diffusion are applied to the leaky-box approximation. One of them (Lagutin-Uchaikin, 2000) assumes a finite mean free path of cosmic ray particles, another one (Lagutin-Tyumentsev, 2004) uses distribution with infinite mean distance between collision with magnetic clouds, when the trajectories have form close to ballistic. Calculations demonstrate that involving boundary conditions is incompatible with spatial distributions given by the second model.

  11. 2-D model for pollutant dispersion at the coastal outfall off Paradip

    Digital Repository Service at National Institute of Oceanography (India)

    Suryanarayana, A.; Babu, M.T.; Vethamony, P.; Gouveia, A.D.

    Simulation of dispersion of the effluent discharge has been carried out using 2-D Model to verify the advection and diffusion of the pollutant patch of the proposed effluent disposal off Paradip, Orissa, India. The simulation of dispersion...

  12. Intravoxel water diffusion heterogeneity MR imaging of nasopharyngeal carcinoma using stretched exponential diffusion model

    Energy Technology Data Exchange (ETDEWEB)

    Lai, Vincent; Khong, Pek Lan [University of Hong Kong, Department of Diagnostic Radiology, Li Ka Shing Faculty of Medicine, Queen Mary Hospital, Pok Fu Lam (China); Lee, Victor Ho Fun; Lam, Ka On; Sze, Henry Chun Kin [University of Hong Kong, Department of Clinical Oncology, Li Ka Shing Faculty of Medicine, Queen Mary Hospital, Pok Fu Lam (China); Chan, Queenie [Philips Healthcare, Hong Kong, Shatin, New Territories (China)

    2015-06-01

    To determine the utility of stretched exponential diffusion model in characterisation of the water diffusion heterogeneity in different tumour stages of nasopharyngeal carcinoma (NPC). Fifty patients with newly diagnosed NPC were prospectively recruited. Diffusion-weighted MR imaging was performed using five b values (0-2,500 s/mm{sup 2}). Respective stretched exponential parameters (DDC, distributed diffusion coefficient; and alpha (α), water heterogeneity) were calculated. Patients were stratified into low and high tumour stage groups based on the American Joint Committee on Cancer (AJCC) staging for determination of the predictive powers of DDC and α using t test and ROC curve analyses. The mean ± standard deviation values were DDC = 0.692 ± 0.199 (x 10{sup -3} mm{sup 2}/s) for low stage group vs 0.794 ± 0.253 (x 10{sup -3} mm{sup 2}/s) for high stage group; α = 0.792 ± 0.145 for low stage group vs 0.698 ± 0.155 for high stage group. α was significantly lower in the high stage group while DDC was negatively correlated. DDC and α were both reliable independent predictors (p < 0.001), with α being more powerful. Optimal cut-off values were (sensitivity, specificity, positive likelihood ratio, negative likelihood ratio) DDC = 0.692 x 10{sup -3} mm{sup 2}/s (94.4 %, 64.3 %, 2.64, 0.09), α = 0.720 (72.2 %, 100 %, -, 0.28). The heterogeneity index α is robust and can potentially help in staging and grading prediction in NPC. (orig.)

  13. Robust and fast nonlinear optimization of diffusion MRI microstructure models.

    Science.gov (United States)

    Harms, R L; Fritz, F J; Tobisch, A; Goebel, R; Roebroeck, A

    2017-07-15

    Advances in biophysical multi-compartment modeling for diffusion MRI (dMRI) have gained popularity because of greater specificity than DTI in relating the dMRI signal to underlying cellular microstructure. A large range of these diffusion microstructure models have been developed and each of the popular models comes with its own, often different, optimization algorithm, noise model and initialization strategy to estimate its parameter maps. Since data fit, accuracy and precision is hard to verify, this creates additional challenges to comparability and generalization of results from diffusion microstructure models. In addition, non-linear optimization is computationally expensive leading to very long run times, which can be prohibitive in large group or population studies. In this technical note we investigate the performance of several optimization algorithms and initialization strategies over a few of the most popular diffusion microstructure models, including NODDI and CHARMED. We evaluate whether a single well performing optimization approach exists that could be applied to many models and would equate both run time and fit aspects. All models, algorithms and strategies were implemented on the Graphics Processing Unit (GPU) to remove run time constraints, with which we achieve whole brain dataset fits in seconds to minutes. We then evaluated fit, accuracy, precision and run time for different models of differing complexity against three common optimization algorithms and three parameter initialization strategies. Variability of the achieved quality of fit in actual data was evaluated on ten subjects of each of two population studies with a different acquisition protocol. We find that optimization algorithms and multi-step optimization approaches have a considerable influence on performance and stability over subjects and over acquisition protocols. The gradient-free Powell conjugate-direction algorithm was found to outperform other common algorithms in terms of

  14. Precipitation of Phase Using General Diffusion Equation with Comparison to Vitek Diffusion Model in Dissimilar Stainless Steels

    Directory of Open Access Journals (Sweden)

    Chih-Chun Hsieh

    2012-01-01

    Full Text Available This study performs a precipitation examination of the phase using the general diffusion equation with comparison to the Vitek model in dissimilar stainless steels during multipass welding. Experimental results demonstrate that the diffusivities (, , and of Cr, Ni, and Si are higher in -ferrite than (, , and in the phase, and that they facilitate the precipitation of the σ phase in the third pass fusion zone. The Vitek diffusion equation can be modified as follows: .

  15. Numerical Solution of Diffusion Models in Biomedical Imaging on Multicore Processors

    Directory of Open Access Journals (Sweden)

    Luisa D'Amore

    2011-01-01

    Full Text Available In this paper, we consider nonlinear partial differential equations (PDEs of diffusion/advection type underlying most problems in image analysis. As case study, we address the segmentation of medical structures. We perform a comparative study of numerical algorithms arising from using the semi-implicit and the fully implicit discretization schemes. Comparison criteria take into account both the accuracy and the efficiency of the algorithms. As measure of accuracy, we consider the Hausdorff distance and the residuals of numerical solvers, while as measure of efficiency we consider convergence history, execution time, speedup, and parallel efficiency. This analysis is carried out in a multicore-based parallel computing environment.

  16. Orbital Advection with Magnetohydrodynamics and Vector Potential

    Energy Technology Data Exchange (ETDEWEB)

    Lyra, Wladimir [Department of Physics and Astronomy, California State University Northrige, 18111 Nordhoff Street, Northridge CA 91130 (United States); McNally, Colin P. [Astronomy Unit, School of Physics and Astronomy, Queen Mary University of London, Mile End Road, London E1 4NS (United Kingdom); Heinemann, Tobias [Niels Bohr International Academy, The Niels Bohr Institute, Blegdamsvej 17, DK-2100, Copenhagen Ø (Denmark); Masset, Frédéric, E-mail: wlyra@csun.edu [Instituto de Ciencias Físicas, Universidad Nacional Autónoma de México, Av. Universidad s/n, 62210 Cuernavaca, Mor. (Mexico)

    2017-10-01

    Orbital advection is a significant bottleneck in disk simulations, and a particularly tricky one when used in connection with magnetohydrodynamics. We have developed an orbital advection algorithm suitable for the induction equation with magnetic potential. The electromotive force is split into advection and shear terms, and we find that we do not need an advective gauge since solving the orbital advection implicitly precludes the shear term from canceling the advection term. We prove and demonstrate the third order in time accuracy of the scheme. The algorithm is also suited to non-magnetic problems. Benchmarked results of (hydrodynamical) planet–disk interaction and of the magnetorotational instability are reproduced. We include detailed descriptions of the construction and selection of stabilizing dissipations (or high-frequency filters) needed to generate practical results. The scheme is self-consistent, accurate, and elegant in its simplicity, making it particularly efficient for straightforward finite-difference methods. As a result of the work, the algorithm is incorporated in the public version of the Pencil Code, where it can be used by the community.

  17. Fractional Heat Conduction Models and Thermal Diffusivity Determination

    Directory of Open Access Journals (Sweden)

    Monika Žecová

    2015-01-01

    Full Text Available The contribution deals with the fractional heat conduction models and their use for determining thermal diffusivity. A brief historical overview of the authors who have dealt with the heat conduction equation is described in the introduction of the paper. The one-dimensional heat conduction models with using integer- and fractional-order derivatives are listed. Analytical and numerical methods of solution of the heat conduction models with using integer- and fractional-order derivatives are described. Individual methods have been implemented in MATLAB and the examples of simulations are listed. The proposal and experimental verification of the methods for determining thermal diffusivity using half-order derivative of temperature by time are listed at the conclusion of the paper.

  18. Diffusion in higher dimensional SYK model with complex fermions

    Science.gov (United States)

    Cai, Wenhe; Ge, Xian-Hui; Yang, Guo-Hong

    2018-01-01

    We construct a new higher dimensional SYK model with complex fermions on bipartite lattices. As an extension of the original zero-dimensional SYK model, we focus on the one-dimension case, and similar Hamiltonian can be obtained in higher dimensions. This model has a conserved U(1) fermion number Q and a conjugate chemical potential μ. We evaluate the thermal and charge diffusion constants via large q expansion at low temperature limit. The results show that the diffusivity depends on the ratio of free Majorana fermions to Majorana fermions with SYK interactions. The transport properties and the butterfly velocity are accordingly calculated at low temperature. The specific heat and the thermal conductivity are proportional to the temperature. The electrical resistivity also has a linear temperature dependence term.

  19. A Diffusion Model for Two-sided Service Systems

    Science.gov (United States)

    Homma, Koichi; Yano, Koujin; Funabashi, Motohisa

    A diffusion model is proposed for two-sided service systems. ‘Two-sided’ refers to the existence of an economic network effect between two different and interrelated groups, e.g., card holders and merchants in an electronic money service. The service benefit for a member of one side depends on the number and quality of the members on the other side. A mathematical model by J. H. Rohlfs explains the network (or bandwagon) effect of communications services. In Rohlfs' model, only the users' group exists and the model is one-sided. This paper extends Rohlfs' model to a two-sided model. We propose, first, a micro model that explains individual behavior in regard to service subscription of both sides and a computational method that drives the proposed model. Second, we develop macro models with two diffusion-rate variables by simplifying the micro model. As a case study, we apply the models to an electronic money service and discuss the simulation results and actual statistics.

  20. Characterization and modeling of thermal diffusion and aggregation in nanofluids.

    Energy Technology Data Exchange (ETDEWEB)

    Gharagozloo, Patricia E.; Goodson, Kenneth E. (Stanford University, Stanford, CA)

    2010-05-01

    Fluids with higher thermal conductivities are sought for fluidic cooling systems in applications including microprocessors and high-power lasers. By adding high thermal conductivity nanoscale metal and metal oxide particles to a fluid the thermal conductivity of the fluid is enhanced. While particle aggregates play a central role in recent models for the thermal conductivity of nanofluids, the effect of particle diffusion in a temperature field on the aggregation and transport has yet to be studied in depth. The present work separates the effects of particle aggregation and diffusion using parallel plate experiments, infrared microscopy, light scattering, Monte Carlo simulations, and rate equations for particle and heat transport in a well dispersed nanofluid. Experimental data show non-uniform temporal increases in thermal conductivity above effective medium theory and can be well described through simulation of the combination of particle aggregation and diffusion. The simulation shows large concentration distributions due to thermal diffusion causing variations in aggregation, thermal conductivity and viscosity. Static light scattering shows aggregates form more quickly at higher concentrations and temperatures, which explains the increased enhancement with temperature reported by other research groups. The permanent aggregates in the nanofluid are found to have a fractal dimension of 2.4 and the aggregate formations that grow over time are found to have a fractal dimension of 1.8, which is consistent with diffusion limited aggregation. Calculations show as aggregates grow the viscosity increases at a faster rate than thermal conductivity making the highly aggregated nanofluids unfavorable, especially at the low fractal dimension of 1.8. An optimum nanoparticle diameter for these particular fluid properties is calculated to be 130 nm to optimize the fluid stability by reducing settling, thermal diffusion and aggregation.

  1. Modeling radiation belt electron dynamics during GEM challenge intervals with the DREAM3D diffusion model

    Science.gov (United States)

    Tu, Weichao; Cunningham, G. S.; Chen, Y.; Henderson, M. G.; Camporeale, E.; Reeves, G. D.

    2013-10-01

    a response to the Geospace Environment Modeling (GEM) "Global Radiation Belt Modeling Challenge," a 3D diffusion model is used to simulate the radiation belt electron dynamics during two intervals of the Combined Release and Radiation Effects Satellite (CRRES) mission, 15 August to 15 October 1990 and 1 February to 31 July 1991. The 3D diffusion model, developed as part of the Dynamic Radiation Environment Assimilation Model (DREAM) project, includes radial, pitch angle, and momentum diffusion and mixed pitch angle-momentum diffusion, which are driven by dynamic wave databases from the statistical CRRES wave data, including plasmaspheric hiss, lower-band, and upper-band chorus. By comparing the DREAM3D model outputs to the CRRES electron phase space density (PSD) data, we find that, with a data-driven boundary condition at Lmax = 5.5, the electron enhancements can generally be explained by radial diffusion, though additional local heating from chorus waves is required. Because the PSD reductions are included in the boundary condition at Lmax = 5.5, our model captures the fast electron dropouts over a large L range, producing better model performance compared to previous published results. Plasmaspheric hiss produces electron losses inside the plasmasphere, but the model still sometimes overestimates the PSD there. Test simulations using reduced radial diffusion coefficients or increased pitch angle diffusion coefficients inside the plasmasphere suggest that better wave models and more realistic radial diffusion coefficients, both inside and outside the plasmasphere, are needed to improve the model performance. Statistically, the results show that, with the data-driven outer boundary condition, including radial diffusion and plasmaspheric hiss is sufficient to model the electrons during geomagnetically quiet times, but to best capture the radiation belt variations during active times, pitch angle and momentum diffusion from chorus waves are required.

  2. An innovation diffusion model for new mobile technologies acceptance

    Directory of Open Access Journals (Sweden)

    Barkoczia Nadi

    2017-01-01

    Full Text Available This paper aims to approach the diffusion model developed in 1960 by Frank Bass has been utilized to study the distribution of different types of new products and services. The Bass Model helps by describing the process in which new products are adopted in a market. This model is a useful tool for predicting the first purchase of an innovative product for which there are competing alternatives on the market. It also provides the innovator with information regarding the size of customers and the adoption time for the product. The second part of the paper is dedicated to a monographic study of specific conceptual correlations between the diffusion of technology and marketing management that emphasizes technological uncertainty and market uncertainty as major risks to innovative projects. In the final section, the results of empirical research conducted in Baia-Mare, Romania will be presented in a way that uses diffusion Bass model to estimate the adoption period for new mobile technologies.

  3. Modeling information diffusion in time-varying community networks

    Science.gov (United States)

    Cui, Xuelian; Zhao, Narisa

    2017-12-01

    Social networks are rarely static, and they typically have time-varying network topologies. A great number of studies have modeled temporal networks and explored social contagion processes within these models; however, few of these studies have considered community structure variations. In this paper, we present a study of how the time-varying property of a modular structure influences the information dissemination. First, we propose a continuous-time Markov model of information diffusion where two parameters, mobility rate and community attractiveness, are introduced to address the time-varying nature of the community structure. The basic reproduction number is derived, and the accuracy of this model is evaluated by comparing the simulation and theoretical results. Furthermore, numerical results illustrate that generally both the mobility rate and community attractiveness significantly promote the information diffusion process, especially in the initial outbreak stage. Moreover, the strength of this promotion effect is much stronger when the modularity is higher. Counterintuitively, it is found that when all communities have the same attractiveness, social mobility no longer accelerates the diffusion process. In addition, we show that the local spreading in the advantage group has been greatly enhanced due to the agglomeration effect caused by the social mobility and community attractiveness difference, which thus increases the global spreading.

  4. Identification of advective entry of soil-gas radon into a crawl space covered with sheets of polyethylene foil

    International Nuclear Information System (INIS)

    Andersen, C.; Koopmanns, M.; Meijer, R.J. de

    1996-04-01

    To assess the effectiveness of mitigative measures against radon ( 222 Rn) entry into houses, experiments were conducted in a crawl-space house where the dirt floor of the crawl space was covered with sheets of 0.23 mm polyethylene foil fixed to the walls. The radon concentration was measured below the foil and in the crawl space together with environmental variables such as indoor-outdoor pressure differences. The experimental data was analyzed using various types of models including a simplistic mass-balance model, a regression model, and a two-dimensional numerical model based on Darcy flow or soil gas and combined diffusive and advective transport of radon. The main outcome of the work was that: (i) The soil-gas entry rate per pascal depressurization was at the order of 1 m 3 h -1 , (ii) the stack-related part of the depressurization of the crawl space (approx. 0.1 Pa deg. C -1 ) was controlled by the temperature difference between the living room of the house and the outdoors (not by the difference between the crawl space and the outdoors), (iii) that part of the wind-related depressurization that was measured by the pressure transducers seemed to force radon into the crawl space in the same proportion as the stack-related part of the depressurization, (iv) the ratio of advective and diffusive entry was approx. 0.7, when the crawl space was depressurized 1.5 Pa, (v) the effective diffusivity of the foil was found to be three orders of magnitude larger than that measured in the laboratory (the enhanced diffusivity was most likely caused by leaks in the foil and by mixing fans located in the crawl space), and (vi) there was no measurable mitigative impact of having the sheets of foil on the crawl-space floor even if the crawl space was artificially pressurized or depressurized. (au) 28 tabs., 36 ills., 61 refs

  5. Social influence and perceptual decision making: a diffusion model analysis.

    Science.gov (United States)

    Germar, Markus; Schlemmer, Alexander; Krug, Kristine; Voss, Andreas; Mojzisch, Andreas

    2014-02-01

    Classic studies on social influence used simple perceptual decision-making tasks to examine how the opinions of others change individuals' judgments. Since then, one of the most fundamental questions in social psychology has been whether social influence can alter basic perceptual processes. To address this issue, we used a diffusion model analysis. Diffusion models provide a stochastic approach for separating the cognitive processes underlying speeded binary decisions. Following this approach, our study is the first to disentangle whether social influence on decision making is due to altering the uptake of available sensory information or due to shifting the decision criteria. In two experiments, we found consistent evidence for the idea that social influence alters the uptake of available sensory evidence. By contrast, participants did not adjust their decision criteria.

  6. Thermomechanics of damageable materials under diffusion: modelling and analysis

    Science.gov (United States)

    Roubíček, Tomáš; Tomassetti, Giuseppe

    2015-12-01

    We propose a thermodynamically consistent general-purpose model describing diffusion of a solute or a fluid in a solid undergoing possible phase transformations and damage, beside possible visco-inelastic processes. Also heat generation/consumption/transfer is considered. Damage is modelled as rate-independent. The applications include metal-hydrogen systems with metal/hydride phase transformation, poroelastic rocks, structural and ferro/para-magnetic phase transformation, water and heat transport in concrete, and if diffusion is neglected, plasticity with damage and viscoelasticity, etc. For the ensuing system of partial differential equations and inclusions, we prove existence of solutions by a carefully devised semi-implicit approximation scheme of the fractional-step type.

  7. Hydrodynamic and diffusive mixing in ICF implosion modeling

    Science.gov (United States)

    Ames, Alexander; Weber, Chris; Cook, Andy

    2017-11-01

    Inertial confinement fusion requires efficient spherical compression of a deuterium-tritium gas mixture by a shock-driven implosion. The performance of the implosion is limited by several phenomena, including differential acceleration of deuterium and tritium ions, and mixing due to the Richtmyer-Meshkov and Rayleigh-Taylor instabilities. The MIRANDA radiation hydrodynamics code at LLNL has recently incorporated multi-species diffusion and multi-group radiation transport models. This enables modeling of the impact of diffusive mixing on the fuel, as well as investigation of ablative Rayleigh-Taylor instability growth and resultant hydrodynamic mixing using single-group and multiple-group radiation drives. Work performed under the auspices of the U.S. D.O.E. by Lawrence Livermore National Laboratory under Contract No. DE-AC52-07NA27344.

  8. Modeling and Analysis of New Products Diffusion on Heterogeneous Networks

    Directory of Open Access Journals (Sweden)

    Shuping Li

    2014-01-01

    Full Text Available We present a heterogeneous networks model with the awareness stage and the decision-making stage to explain the process of new products diffusion. If mass media is neglected in the decision-making stage, there is a threshold whether the innovation diffusion is successful or not, or else it is proved that the network model has at least one positive equilibrium. For networks with the power-law degree distribution, numerical simulations confirm analytical results, and also at the same time, by numerical analysis of the influence of the network structure and persuasive advertisements on the density of adopters, we give two different products propagation strategies for two classes of nodes in scale-free networks.

  9. Attempt to model laboratory-scale diffusion and retardation data

    Science.gov (United States)

    Hölttä, P.; Siitari-Kauppi, M.; Hakanen, M.; Tukiainen, V.

    2001-02-01

    Different approaches for measuring the interaction between radionuclides and rock matrix are needed to test the compatibility of experimental retardation parameters and transport models used in assessing the safety of the underground repositories for the spent nuclear fuel. In this work, the retardation of sodium, calcium and strontium was studied on mica gneiss, unaltered, moderately altered and strongly altered tonalite using dynamic fracture column method. In-diffusion of calcium into rock cubes was determined to predict retardation in columns. In-diffusion of calcium into moderately and strongly altered tonalite was interpreted using a numerical code FTRANS. The code was able to interprete in-diffusion of weakly sorbing calcium into the saturated porous matrix. Elution curves of calcium for the moderately and strongly altered tonalite fracture columns were explained adequately using FTRANS code and parameters obtained from in-diffusion calculations. In this paper, mass distribution ratio values of sodium, calcium and strontium for intact rock are compared to values, previously obtained for crushed rock from batch and crushed rock column experiments. Kd values obtained from fracture column experiments were one order of magnitude lower than Kd values from batch experiments.

  10. Boundary value problemfor multidimensional fractional advection-dispersion equation

    Directory of Open Access Journals (Sweden)

    Khasambiev Mokhammad Vakhaevich

    2015-05-01

    authors first considered the boundary value problem for stationary equation for mass transfer in super-diffusion conditions and abnormal advection. Then the solution of the problem is explicitly given. The solution is obtained by the Fourier’s method.The obtained results will be useful in liquid filtration theory in fractal medium and for modeling the temperature variations in the heated bar.

  11. Modelling and control of a diffusion/LPCVD furnace

    Science.gov (United States)

    Dewaard, H.; Dekoning, W. L.

    1988-12-01

    Heat transfer inside a cylindrical resistance diffusion/Low Pressure Chemical Vapor Deposition (LPCVD) furnace is studied with the aim of developing an improved temperature controller. A model of the thermal behavior is derived, which covers the important class of furnaces equipped with semitransparent quartz process tubes. The model takes into account the thermal behavior of the thermocouples. Currently used temperature controllers are shown to be highly inefficient for very large scale integration applications. Based on the model an alternative temperature controller of the LQG (linear quadratic Gaussian) type is proposed which features direct wafer temperature control. Some simulation results are given.

  12. Analysis of a diffuse interface model of multispecies tumor growth

    Czech Academy of Sciences Publication Activity Database

    Dai, M.; Feireisl, Eduard; Rocca, E.; Schimperna, G.; Schonbek, M.E.

    2017-01-01

    Roč. 30, č. 4 (2017), s. 1639-1658 ISSN 0951-7715 EU Projects: European Commission(XE) 320078 - MATHEF Institutional support: RVO:67985840 Keywords : Cahn-Hilliard equation * Darcy law * diffuse interface model Subject RIV: BA - General Mathematics OBOR OECD: Pure mathematics Impact factor: 1.767, year: 2016 http://iopscience.iop.org/article/10.1088/1361-6544/aa6063/meta

  13. An elemental diffusion description for LTE plasma models

    Energy Technology Data Exchange (ETDEWEB)

    Hartgers, A; Heijden, H W P van der; Beks, M L; Dijk, J van; Mullen, J A M van der [Department of Physics, Eindhoven University of Technology, PO Box 513, 5600 MB Eindhoven (Netherlands)

    2005-09-21

    A novel method to describe diffusive processes in plasmas in local thermodynamic equilibrium (LTE) was developed, based on the transport of elements instead of individual species. This method combines the elegance of the LTE description of a chemical composition with the flexibility of explicit transport for each element. A simple model of a metal halide lamp containing Hg dosed with NaI is used to illustrate the method.

  14. An epidemic model of rumor diffusion in online social networks

    Science.gov (United States)

    Cheng, Jun-Jun; Liu, Yun; Shen, Bo; Yuan, Wei-Guo

    2013-01-01

    So far, in some standard rumor spreading models, the transition probability from ignorants to spreaders is always treated as a constant. However, from a practical perspective, the case that individual whether or not be infected by the neighbor spreader greatly depends on the trustiness of ties between them. In order to solve this problem, we introduce a stochastic epidemic model of the rumor diffusion, in which the infectious probability is defined as a function of the strength of ties. Moreover, we investigate numerically the behavior of the model on a real scale-free social site with the exponent γ = 2.2. We verify that the strength of ties plays a critical role in the rumor diffusion process. Specially, selecting weak ties preferentially cannot make rumor spread faster and wider, but the efficiency of diffusion will be greatly affected after removing them. Another significant finding is that the maximum number of spreaders max( S) is very sensitive to the immune probability μ and the decay probability v. We show that a smaller μ or v leads to a larger spreading of the rumor, and their relationships can be described as the function ln(max( S)) = Av + B, in which the intercept B and the slope A can be fitted perfectly as power-law functions of μ. Our findings may offer some useful insights, helping guide the application in practice and reduce the damage brought by the rumor.

  15. Directed Diffusion Modelling for Tesso Nilo National Parks Case Study

    Science.gov (United States)

    Yasri, Indra; Safrianti, Ery

    2018-01-01

    — Directed Diffusion (DD has ability to achieve energy efficiency in Wireless Sensor Network (WSN). This paper proposes Directed Diffusion (DD) modelling for Tesso Nilo National Parks (TNNP) case study. There are 4 stages of scenarios involved in this modelling. It’s started by appointing of sampling area through GPS coordinate. The sampling area is determined by optimization processes from 500m x 500m up to 1000m x 1000m with 100m increment in between. The next stage is sensor node placement. Sensor node is distributed in sampling area with three different quantities i.e. 20 nodes, 30 nodes and 40 nodes. One of those quantities is choose as an optimized sensor node placement. The third stage is to implement all scenarios in stages 1 and stages 2 on DD modelling. In the last stage, the evaluation process to achieve most energy efficient in the combination of optimized sampling area and optimized sensor node placement on Direct Diffusion (DD) routing protocol. The result shows combination between sampling area 500m x 500m and 20 nodes able to achieve energy efficient to support a forest preventive fire system at Tesso Nilo National Parks.

  16. Diffusion Modeling: A Study of the Diffusion of “Jatropha Curcas ...

    African Journals Online (AJOL)

    Consequently, the study recommended the use of diffusion networks which integrate interpersonal networks, and multimedia strategies for the effective diffusion of innovation such as Jacodiesel in Adamawa State and other parts of the country. Keywords: Sustainability, Diffusion, Innovation, Communicative Influence, ...

  17. The role of boundary layer momentum advection in the mean ...

    Indian Academy of Sciences (India)

    Vishal Dixit

    2017-08-24

    Aug 24, 2017 ... Since ITCZ is generally east–west oriented, neglect- ing zonal geopotential gradients, v = −εx. 1 ρ0. ∂Ps. ∂y εxεy + f. 2 . (6). These models assume that the non-linear advection effects as well as the effect of turbulent eddies can be represented by Rayleigh friction coefficients in zonal and meridional ...

  18. Performance modeling of parallel algorithms for solving neutron diffusion problems

    International Nuclear Information System (INIS)

    Azmy, Y.Y.; Kirk, B.L.

    1995-01-01

    Neutron diffusion calculations are the most common computational methods used in the design, analysis, and operation of nuclear reactors and related activities. Here, mathematical performance models are developed for the parallel algorithm used to solve the neutron diffusion equation on message passing and shared memory multiprocessors represented by the Intel iPSC/860 and the Sequent Balance 8000, respectively. The performance models are validated through several test problems, and these models are used to estimate the performance of each of the two considered architectures in situations typical of practical applications, such as fine meshes and a large number of participating processors. While message passing computers are capable of producing speedup, the parallel efficiency deteriorates rapidly as the number of processors increases. Furthermore, the speedup fails to improve appreciably for massively parallel computers so that only small- to medium-sized message passing multiprocessors offer a reasonable platform for this algorithm. In contrast, the performance model for the shared memory architecture predicts very high efficiency over a wide range of number of processors reasonable for this architecture. Furthermore, the model efficiency of the Sequent remains superior to that of the hypercube if its model parameters are adjusted to make its processors as fast as those of the iPSC/860. It is concluded that shared memory computers are better suited for this parallel algorithm than message passing computers

  19. Analysis on a diffusive SIS epidemic model with logistic source

    Science.gov (United States)

    Li, Bo; Li, Huicong; Tong, Yachun

    2017-08-01

    In this paper, we are concerned with an SIS epidemic reaction-diffusion model with logistic source in spatially heterogeneous environment. We first discuss some basic properties of the parabolic system, including the uniform upper bound of solutions and global stability of the endemic equilibrium when spatial environment is homogeneous. Our primary focus is to determine the asymptotic profile of endemic equilibria (when exist) if the diffusion (migration) rate of the susceptible or infected population is small or large. Combined with the results of Li et al. (J Differ Equ 262:885-913, 2017) where the case of linear source is studied, our analysis suggests that varying total population enhances persistence of infectious disease.

  20. Thermodynamic modelling of fast dopant diffusion in Si

    Science.gov (United States)

    Saltas, V.; Chroneos, A.; Vallianatos, F.

    2018-04-01

    In the present study, nickel and copper fast diffusion in silicon is investigated in the framework of the cBΩ thermodynamic model, which connects point defect parameters with the bulk elastic and expansion properties. All the calculated point defect thermodynamic properties (activation Gibbs free energy, activation enthalpy, activation entropy, and activation volume) exhibit temperature dependence due to the non-linear anharmonic behavior of the isothermal bulk modulus of Si. Calculated activation enthalpies (0.15-0.16 eV for Ni and 0.17-0.19 eV for Cu) are in agreement with the reported experimental results. Small values of calculated activation volumes for both dopants (˜4% of the mean atomic volume) are consistent with the interstitial diffusion of Ni and Cu in Si.

  1. Continuum modelling of silicon diffusion in indium gallium arsenide

    Science.gov (United States)

    Aldridge, Henry Lee, Jr.

    A possible method to overcome the physical limitations experienced by continued transistor scaling and continue improvements in performance and power consumption is integration of III-V semiconductors as alternative channel materials for logic devices. Indium Gallium Arsenide (InGaAs) is such a material from the III-V semiconductor family, which exhibit superior electron mobilities and injection velocities than that of silicon. In order for InGaAs integration to be realized, contact resistances must be minimized through maximizing activation of dopants in this material. Additionally, redistribution of dopants during processing must be clearly understood and ultimately controlled at the nanometer-scale. In this work, the activation and diffusion behavior of silicon, a prominent n-type dopant in InGaAs, has been characterized and subsequently modelled using the Florida Object Oriented Process and Device Simulator (FLOOPS). In contrast to previous reports, silicon exhibits non-negligible diffusion in InGaAs, even for smaller thermal budget rapid thermal anneals (RTAs). Its diffusion is heavily concentration-dependent, with broadening "shoulder-like" profiles when doping levels exceed 1-3x1019cm -3, for both ion-implanted and Molecular Beam Epitaxy (MBE)-grown cases. Likewise a max net-activation value of ˜1.7x1019cm -3 is consistently reached with enough thermal processing, regardless of doping method. In line with experimental results and several ab-initio calculation results, rapid concentration-dependent diffusion of Si in InGaAs and the upper limits of its activation is believed to be governed by cation vacancies that serve as compensating defects in heavily n-type regions of InGaAs. These results are ultimately in line with an amphoteric defect model, where the activation limits of dopants are an intrinsic limitation of the material, rather than governed by individual dopant species or their methods of incorporation. As a result a Fermi level dependent point

  2. A generative model for resolution enhancement of diffusion MRI data.

    Science.gov (United States)

    Yap, Pew-Thian; An, Hongyu; Chen, Yasheng; Shen, Dinggang

    2013-01-01

    The advent of diffusion magnetic resonance imaging (DMRI) presents unique opportunities for the exploration of white matter connectivity in vivo and non-invasively. However, DMRI suffers from insufficient spatial resolution, often limiting its utility to the studying of only major white matter structures. Many image enhancement techniques rely on expensive scanner upgrades and complex time-consuming sequences. We will instead take a post-processing approach in this paper for resolution enhancement of DMRI data. This will allow the enhancement of existing data without re-acquisition. Our method uses a generative model that reflects the image generation process and, after the parameters of the model have been estimated, we can effectively sample high-resolution images from this model. More specifically, we assume that the diffusion-weighted signal at each voxel is an agglomeration of signals from an ensemble of fiber segments that can be oriented and located freely within the voxel. Our model for each voxel therefore consists of an arbitrary number of signal generating fiber segments, and the model parameters that need to be determined are the locations and orientations of these fiber segments. Solving for these parameters is an ill-posed problem. However, by borrowing information from neighboring voxels, we show that this can be solved by using Markov chain Monte Carlo (MCMC) methods such as the Metropolis-Hastings algorithm. Preliminary results indicate that out method substantially increases structural visibility in both subcortical and cortical regions.

  3. A discrete model to study reaction-diffusion-mechanics systems.

    Science.gov (United States)

    Weise, Louis D; Nash, Martyn P; Panfilov, Alexander V

    2011-01-01

    This article introduces a discrete reaction-diffusion-mechanics (dRDM) model to study the effects of deformation on reaction-diffusion (RD) processes. The dRDM framework employs a FitzHugh-Nagumo type RD model coupled to a mass-lattice model, that undergoes finite deformations. The dRDM model describes a material whose elastic properties are described by a generalized Hooke's law for finite deformations (Seth material). Numerically, the dRDM approach combines a finite difference approach for the RD equations with a Verlet integration scheme for the equations of the mass-lattice system. Using this framework results were reproduced on self-organized pacemaking activity that have been previously found with a continuous RD mechanics model. Mechanisms that determine the period of pacemakers and its dependency on the medium size are identified. Finally it is shown how the drift direction of pacemakers in RDM systems is related to the spatial distribution of deformation and curvature effects.

  4. Turbulent diffusion modelling for windflow and dispersion analysis

    International Nuclear Information System (INIS)

    Bartzis, J.G.

    1988-01-01

    The need for simple but reliable models for turbulent diffusion for windflow and atmospheric dispersion analysis is a necessity today if one takes into consideration the relatively high demand in computer time and costs for such an analysis, arising mainly from the often large solution domains needed, the terrain complexity and the transient nature of the phenomena. In the accident consequence assessment often there is a need for a relatively large number of cases to be analysed increasing further the computer time and costs. Within the framework of searching for relatively simple and universal eddy viscosity/diffusivity models, a new three dimensional non isotropic model is proposed applicable to any domain complexity and any atmospheric stability conditions. The model utilizes the transport equation for turbulent kinetic energy but introduces a new approach in effective length scale estimation based on the flow global characteristics and local atmospheric stability. The model is discussed in detail and predictions are given for flow field and boundary layer thickness. The results are compared with experimental data with satisfactory results

  5. A discrete model to study reaction-diffusion-mechanics systems.

    Directory of Open Access Journals (Sweden)

    Louis D Weise

    Full Text Available This article introduces a discrete reaction-diffusion-mechanics (dRDM model to study the effects of deformation on reaction-diffusion (RD processes. The dRDM framework employs a FitzHugh-Nagumo type RD model coupled to a mass-lattice model, that undergoes finite deformations. The dRDM model describes a material whose elastic properties are described by a generalized Hooke's law for finite deformations (Seth material. Numerically, the dRDM approach combines a finite difference approach for the RD equations with a Verlet integration scheme for the equations of the mass-lattice system. Using this framework results were reproduced on self-organized pacemaking activity that have been previously found with a continuous RD mechanics model. Mechanisms that determine the period of pacemakers and its dependency on the medium size are identified. Finally it is shown how the drift direction of pacemakers in RDM systems is related to the spatial distribution of deformation and curvature effects.

  6. Sooting Characteristics and Modeling in Counterflow Diffusion Flames

    KAUST Repository

    Wang, Yu

    2013-11-01

    Soot formation is one of the most complex phenomena in combustion science and an understanding of the underlying physico-chemical mechanisms is important. This work adopted both experimental and numerical approaches to study soot formation in laminar counterfl ow diffusion flames. As polycyclic aromatic hydrocarbons (PAHs) are the precursors of soot particles, a detailed gas-phase chemical mechanism describing PAH growth upto coronene for fuels with 1 to 4 carbon atoms was validated against laminar premixed and counter- flow diffusion fl ames. Built upon this gas-phase mechanism, a soot model was then developed to describe soot inception and surface growth. This soot model was sub- sequently used to study fuel mixing effect on soot formation in counterfl ow diffusion flames. Simulation results showed that compared to the baseline case of the ethylene flame, the doping of 5% (by volume) propane or ethane in ethylene tends to increase the soot volume fraction and number density while keeping the average soot size almost unchanged. These results are in agreement with experimental observations. Laser light extinction/scattering as well as laser induced fluorescence techniques were used to study the effect of strain rate on soot and PAH formation in counterfl ow diffusion ames. The results showed that as strain rate increased both soot volume fraction and PAH concentrations decreased. The concentrations of larger PAH were more sensitive to strain rate compared to smaller ones. The effect of CO2 addition on soot formation was also studied using similar experimental techniques. Soot loading was reduced with CO2 dilution. Subsequent numerical modeling studies were able to reproduce the experimental trend. In addition, the chemical effect of CO2 addition was analyzed using numerical data. Critical conditions for the onset of soot were systematically studied in counterfl ow diffusion ames for various gaseous hydrocarbon fuels and at different strain rates. A sooting

  7. Application of the evolution theory in modelling of innovation diffusion

    Directory of Open Access Journals (Sweden)

    Krstić Milan

    2016-01-01

    Full Text Available The theory of evolution has found numerous analogies and applications in other scientific disciplines apart from biology. In that sense, today the so-called 'memetic-evolution' has been widely accepted. Memes represent a complex adaptable system, where one 'meme' represents an evolutional cultural element, i.e. the smallest unit of information which can be identified and used in order to explain the evolution process. Among others, the field of innovations has proved itself to be a suitable area where the theory of evolution can also be successfully applied. In this work the authors have started from the assumption that it is also possible to apply the theory of evolution in the modelling of the process of innovation diffusion. Based on the conducted theoretical research, the authors conclude that the process of innovation diffusion in the interpretation of a 'meme' is actually the process of imitation of the 'meme' of innovation. Since during the process of their replication certain 'memes' show a bigger success compared to others, that eventually leads to their natural selection. For the survival of innovation 'memes', their manifestations are of key importance in the sense of their longevity, fruitfulness and faithful replicating. The results of the conducted research have categorically confirmed the assumption of the possibility of application of the evolution theory with the innovation diffusion with the help of innovation 'memes', which opens up the perspectives for some new researches on the subject.

  8. Different approach to the modeling of nonfree particle diffusion

    Science.gov (United States)

    Buhl, Niels

    2018-03-01

    A new approach to the modeling of nonfree particle diffusion is presented. The approach uses a general setup based on geometric graphs (networks of curves), which means that particle diffusion in anything from arrays of barriers and pore networks to general geometric domains can be considered and that the (free random walk) central limit theorem can be generalized to cover also the nonfree case. The latter gives rise to a continuum-limit description of the diffusive motion where the effect of partially absorbing barriers is accounted for in a natural and non-Markovian way that, in contrast to the traditional approach, quantifies the absorptivity of a barrier in terms of a dimensionless parameter in the range 0 to 1. The generalized theorem gives two general analytic expressions for the continuum-limit propagator: an infinite sum of Gaussians and an infinite sum of plane waves. These expressions entail the known method-of-images and Laplace eigenfunction expansions as special cases and show how the presence of partially absorbing barriers can lead to phenomena such as line splitting and band gap formation in the plane wave wave-number spectrum.

  9. Modeling of 1D Anomalous Diffusion in Fractured Nanoporous Media

    Directory of Open Access Journals (Sweden)

    Albinali Ali

    2016-07-01

    Full Text Available Fractured nanoporous reservoirs include multi-scale and discontinuous fractures coupled with a complex nanoporous matrix. Such systems cannot be described by the conventional dual-porosity (or multi-porosity idealizations due to the presence of different flow mechanisms at multiple scales. More detailed modeling approaches, such as Discrete Fracture Network (DFN models, similarly suffer from the extensive data requirements dictated by the intricacy of the flow scales, which eventually deter the utility of these models. This paper discusses the utility and construction of 1D analytical and numerical anomalous diffusion models for heterogeneous, nanoporous media, which is commonly encountered in oil and gas production from tight, unconventional reservoirs with fractured horizontal wells. A fractional form of Darcy’s law, which incorporates the non-local and hereditary nature of flow, is coupled with the classical mass conservation equation to derive a fractional diffusion equation in space and time. Results show excellent agreement with established solutions under asymptotic conditions and are consistent with the physical intuitions.

  10. A reaction-diffusion model of cholinergic retinal waves.

    Directory of Open Access Journals (Sweden)

    Benjamin Lansdell

    2014-12-01

    Full Text Available Prior to receiving visual stimuli, spontaneous, correlated activity in the retina, called retinal waves, drives activity-dependent developmental programs. Early-stage waves mediated by acetylcholine (ACh manifest as slow, spreading bursts of action potentials. They are believed to be initiated by the spontaneous firing of Starburst Amacrine Cells (SACs, whose dense, recurrent connectivity then propagates this activity laterally. Their inter-wave interval and shifting wave boundaries are the result of the slow after-hyperpolarization of the SACs creating an evolving mosaic of recruitable and refractory cells, which can and cannot participate in waves, respectively. Recent evidence suggests that cholinergic waves may be modulated by the extracellular concentration of ACh. Here, we construct a simplified, biophysically consistent, reaction-diffusion model of cholinergic retinal waves capable of recapitulating wave dynamics observed in mice retina recordings. The dense, recurrent connectivity of SACs is modeled through local, excitatory coupling occurring via the volume release and diffusion of ACh. In addition to simulation, we are thus able to use non-linear wave theory to connect wave features to underlying physiological parameters, making the model useful in determining appropriate pharmacological manipulations to experimentally produce waves of a prescribed spatiotemporal character. The model is used to determine how ACh mediated connectivity may modulate wave activity, and how parameters such as the spontaneous activation rate and sAHP refractory period contribute to critical wave size variability.

  11. Compact Models for Defect Diffusivity in Semiconductor Alloys.

    Energy Technology Data Exchange (ETDEWEB)

    Wright, Alan F. [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States). Nanostructure Physics Department; Modine, Normand A. [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States). Nanostructure Physics Department; Lee, Stephen R. [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States). Advanced Materials Sciences Department; Foiles, Stephen M. [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States). Computational Materials and Data Science Department

    2017-09-01

    Predicting transient effects caused by short - pulse neutron irradiation of electronic devices is an important part of Sandia's mission. For example , predicting the diffusion of radiation - induced point defects is needed with in Sandia's Qualification Alternative to the Sandia Pulsed Reactor (QASPR) pro gram since defect diffusion mediates transient gain recovery in QASPR electronic devices. Recently, the semiconductors used to fabricate radiation - hard electronic devices have begun to shift from silicon to III - V compounds such as GaAs, InAs , GaP and InP . An advantage of this shift is that it allows engineers to optimize the radiation hardness of electronic devices by using alloy s such as InGaAs and InGaP . However, the computer codes currently being used to simulate transient radiation effects in QASP R devices will need to be modified since they presume that defect properties (charge states, energy levels, and diffusivities) in these alloys do not change with time. This is not realistic since the energy and properties of a defect depend on the types of atoms near it and , therefore, on its location in the alloy. In particular, radiation - induced defects are created at nearly random locations in an alloy and the distribution of their local environments - and thus their energies and properties - evolves with time as the defects diffuse through the alloy . To incorporate these consequential effects into computer codes used to simulate transient radiation effects, we have developed procedures to accurately compute the time dependence of defect energies and properties and then formulate them within compact models that can be employed in these computer codes. In this document, we demonstrate these procedures for the case of the highly mobile P interstitial (I P ) in an InGaP alloy. Further dissemination only as authorized to U.S. Government agencies and their contractors; other requests shall be approved by the originating facility or higher DOE

  12. Verification of Advective Bar Elements Implemented in the Aria Thermal Response Code.

    Energy Technology Data Exchange (ETDEWEB)

    Mills, Brantley [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States)

    2016-01-01

    A verification effort was undertaken to evaluate the implementation of the new advective bar capability in the Aria thermal response code. Several approaches to the verification process were taken : a mesh refinement study to demonstrate solution convergence in the fluid and the solid, visually examining the mapping of the advective bar element nodes to the surrounding surfaces, and a comparison of solutions produced using the advective bars for simple geometries with solutions from commercial CFD software . The mesh refinement study has shown solution convergence for simple pipe flow in both temperature and velocity . Guidelines were provided to achieve appropriate meshes between the advective bar elements and the surrounding volume. Simulations of pipe flow using advective bars elements in Aria have been compared to simulations using the commercial CFD software ANSYS Fluent (r) and provided comparable solutions in temperature and velocity supporting proper implementation of the new capability. Verification of Advective Bar Elements iv Acknowledgements A special thanks goes to Dean Dobranich for his guidance and expertise through all stages of this effort . His advice and feedback was instrumental to its completion. Thanks also goes to Sam Subia and Tolu Okusanya for helping to plan many of the verification activities performed in this document. Thank you to Sam, Justin Lamb and Victor Brunini for their assistance in resolving issues encountered with running the advective bar element model. Finally, thanks goes to Dean, Sam, and Adam Hetzler for reviewing the document and providing very valuable comments.

  13. Residual sweeping errors in turbulent particle pair diffusion in a Lagrangian diffusion model.

    Directory of Open Access Journals (Sweden)

    Nadeem A Malik

    Full Text Available Thomson, D. J. & Devenish, B. J. [J. Fluid Mech. 526, 277 (2005] and others have suggested that sweeping effects make Lagrangian properties in Kinematic Simulations (KS, Fung et al [Fung J. C. H., Hunt J. C. R., Malik N. A. & Perkins R. J. J. Fluid Mech. 236, 281 (1992], unreliable. However, such a conclusion can only be drawn under the assumption of locality. The major aim here is to quantify the sweeping errors in KS without assuming locality. Through a novel analysis based upon analysing pairs of particle trajectories in a frame of reference moving with the large energy containing scales of motion it is shown that the normalized integrated error [Formula: see text] in the turbulent pair diffusivity (K due to the sweeping effect decreases with increasing pair separation (σl, such that [Formula: see text] as σl/η → ∞; and [Formula: see text] as σl/η → 0. η is the Kolmogorov turbulence microscale. There is an intermediate range of separations 1 < σl/η < ∞ in which the error [Formula: see text] remains negligible. Simulations using KS shows that in the swept frame of reference, this intermediate range is large covering almost the entire inertial subrange simulated, 1 < σl/η < 105, implying that the deviation from locality observed in KS cannot be atributed to sweeping errors. This is important for pair diffusion theory and modeling. PACS numbers: 47.27.E?, 47.27.Gs, 47.27.jv, 47.27.Ak, 47.27.tb, 47.27.eb, 47.11.-j.

  14. Non-linear thermal engineering, chaotic advection and mixing; Thermique non-lineaire, melange et advection chaotique

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1998-12-31

    This conference day was jointly organized by the `university group of thermal engineering (GUT)` and the French association of thermal engineers. This book of proceedings contains 7 papers entitled: `energy spectra of a passive scalar undergoing advection by a chaotic flow`; `analysis of chaotic behaviours: from topological characterization to modeling`; `temperature homogeneity by Lagrangian chaos in a direct current flow heat exchanger: numerical approach`; ` thermal instabilities in a mixed convection phenomenon: nonlinear dynamics`; `experimental characterization study of the 3-D Lagrangian chaos by thermal analogy`; `influence of coherent structures on the mixing of a passive scalar`; `evaluation of the performance index of a chaotic advection effect heat exchanger for a wide range of Reynolds numbers`. (J.S.)

  15. Parametric pattern selection in a reaction-diffusion model.

    Directory of Open Access Journals (Sweden)

    Michael Stich

    Full Text Available We compare spot patterns generated by Turing mechanisms with those generated by replication cascades, in a model one-dimensional reaction-diffusion system. We determine the stability region of spot solutions in parameter space as a function of a natural control parameter (feed-rate where degenerate patterns with different numbers of spots coexist for a fixed feed-rate. While it is possible to generate identical patterns via both mechanisms, we show that replication cascades lead to a wider choice of pattern profiles that can be selected through a tuning of the feed-rate, exploiting hysteresis and directionality effects of the different pattern pathways.

  16. Analysis of a diffuse interface model of multispecies tumor growth

    Czech Academy of Sciences Publication Activity Database

    Dai, M.; Feireisl, Eduard; Rocca, E.; Schimperna, G.; Schonbek, M.E.

    2017-01-01

    Roč. 30, č. 4 (2017), s. 1639-1658 ISSN 0951-7715 EU Projects: European Commission(XE) 320078 - MATHEF Institutional support: RVO:67985840 Keywords : Cahn-Hilliard equation * Darcy law * diffuse interface model Subject RIV: BA - General Mathematics OBOR OECD: Pure mathematics Impact factor: 1.767, year: 2016 http://iopscience.iop.org/article/10.1088/1361-6544/aa6063/meta;jsessionid=73B30CFD9F74DD027762D29C83D3094F.c3.iopscience.cld.iop.org

  17. Reading and a diffusion model analysis of reaction time.

    Science.gov (United States)

    Naples, Adam; Katz, Leonard; Grigorenko, Elena L

    2012-01-01

    Processing speed is associated with reading performance. However, the literature is not clear either on the definition of processing speed or on why and how it contributes to reading performance. In this study we demonstrated that processing speed, as measured by reaction time, is not a unitary construct. Using the diffusion model of two-choice reaction time, we assessed processing speed in a series of same-different reaction time tasks for letter and number strings. We demonstrated that the association between reaction time and reading performance is driven by processing speed for reading-related information, but not motor or sensory encoding speed.

  18. SHIR competitive information diffusion model for online social media

    Science.gov (United States)

    Liu, Yun; Diao, Su-Meng; Zhu, Yi-Xiang; Liu, Qing

    2016-11-01

    In online social media, opinion divergences and differentiations generally exist as a result of individuals' extensive participation and personalization. In this paper, a Susceptible-Hesitated-Infected-Removed (SHIR) model is proposed to study the dynamics of competitive dual information diffusion. The proposed model extends the classical SIR model by adding hesitators as a neutralized state of dual information competition. It is both hesitators and stable spreaders that facilitate information dissemination. Researching on the impacts of diffusion parameters, it is found that the final density of stiflers increases monotonically as infection rate increases and removal rate decreases. And the advantage information with larger stable transition rate takes control of whole influence of dual information. The density of disadvantage information spreaders slightly grows with the increase of its stable transition rate, while whole spreaders of dual information and the relaxation time remain almost unchanged. Moreover, simulations imply that the final result of competition is closely related to the ratio of stable transition rates of dual information. If the stable transition rates of dual information are nearly the same, a slightly reduction of the smaller one brings out a significant disadvantage in its propagation coverage. Additionally, the relationship of the ratio of final stiflers versus the ratio of stable transition rates presents power characteristic.

  19. A chaotic model for advertising diffusion problem with competition

    Science.gov (United States)

    Ip, W. H.; Yung, K. L.; Wang, Dingwei

    2012-08-01

    In this article, the author extends Dawid and Feichtinger's chaotic advertising diffusion model into the duopoly case. A computer simulation system is used to test this enhanced model. Based on the analysis of simulation results, it is found that the best advertising strategy in duopoly is to increase the advertising investment to reach the best Win-Win situation where the oscillation of market portion will not occur. In order to effectively arrive at the best situation, we define a synthetic index and two thresholds. An estimation method for the parameters of the index and thresholds is proposed in this research. We can reach the Win-Win situation by simply selecting the control parameters to make the synthetic index close to the threshold of min-oscillation state. The numerical example and computational results indicated that the proposed chaotic model is useful to describe and analyse advertising diffusion process in duopoly, it is an efficient tool for the selection and optimisation of advertising strategy.

  20. Water Diffusion Modelling of CFB Fly Ash Thermoset Composite

    Directory of Open Access Journals (Sweden)

    Villa Ralph P.

    2016-01-01

    Full Text Available The shift in coal-fired power plants from pulverized coal (PC boiler technology into the greener circulating fluidized bed (CFB boiler technology resulted into a major deviation in the properties of the waste fly ash generated making it less suitable for its previous application as additives for construction materials. A new market for CFB fly ash had to be found for it not to end up as a zero value by-product. Using CFB fly ash as filler for thermoset composites is a new and remarkable application. Only a few studies, however, have been done to characterize the properties of this new material. Further experimentation and analysis may be costly and time-consuming since common procedures are material destructive. A computer-aided modeling of the composite’s water sorption behavior was done. The effect of particle loading, size and shape were considered. These properties were varied and the resulting overall diffusivities were compared to previous experimental studies. The comparison of the model and experimental diffusivity values showed satisfactory results. This model may then provide a cheaper and more time-efficient method for the characterization of the water sorption properties of CFB fly ash thermoset composites. In the future, this may lead to further studies on its application as a green material.

  1. Analytical simulation of two dimensional advection dispersion ...

    African Journals Online (AJOL)

    The study was designed to investigate the analytical simulation of two dimensional advection dispersion equation of contaminant transport. The steady state flow condition of the contaminant transport where inorganic contaminants in aqueous waste solutions are disposed of at the land surface where it would migrate ...

  2. Analytical Simulation of Two Dimensional Advection Dispersion ...

    African Journals Online (AJOL)

    ADOWIE PERE

    ABSTRACT: The study was designed to investigate the analytical simulation of two dimensional advection dispersion equation of contaminant transport. The steady state flow condition of the contaminant transport where inorganic contaminants in aqueous waste solutions are disposed of at the land surface where it would ...

  3. Modeling the Determinants Influencing the Diffusion of Mobile Internet

    Science.gov (United States)

    Alwahaishi, Saleh; Snášel, Václav

    2013-04-01

    Understanding individual acceptance and use of Information and Communication Technology (ICT) is one of the most mature streams of information systems research. In Information Technology and Information System research, numerous theories are used to understand users' adoption of new technologies. Various models were developed including the Innovation Diffusion Theory, Theory of Reasoned Action, Theory of Planned Behavior, Technology Acceptance Model, and recently, the Unified Theory of Acceptance and Use of Technology. This research composes a new hybrid theoretical framework to identify the factors affecting the acceptance and use of Mobile Internet -as an ICT application- in a consumer context. The proposed model incorporates eight constructs: Performance Expectancy (PE), Effort Expectancy (EE), Facilitating Conditions (FC), Social Influences (SI), Perceived Value (PV), Perceived Playfulness (PP), Attention Focus (AF), and Behavioral intention (BI). Individual differences-namely, age, gender, education, income, and experience are moderating the effects of these constructs on behavioral intention and technology use.

  4. Global existence and asymptotic behaviour for a degenerate diffusive SEIR model

    Directory of Open Access Journals (Sweden)

    T. Aliziane

    2005-02-01

    Full Text Available In this paper we analyze the global existence and asymptotic behavior of a reaction diffusion system with degenerate diffusion arising in modeling the spatial spread of an epidemic disease.

  5. Introducing serendipity in a social network model of knowledge diffusion

    International Nuclear Information System (INIS)

    Cremonini, Marco

    2016-01-01

    Highlights: • Serendipity as a control mechanism for knowledge diffusion in social network. • Local communication enhanced in the periphery of a network. • Prevalence of hub nodes in the network core mitigated. • Potential disruptive effect on network formation of uncontrolled serendipity. - Abstract: In this paper, we study serendipity as a possible strategy to control the behavior of an agent-based network model of knowledge diffusion. The idea of considering serendipity in a strategic way has been first explored in Network Learning and Information Seeking studies. After presenting the major contributions of serendipity studies to digital environments, we discuss the extension to our model: Agents are enriched with random topics for establishing new communication according to different strategies. The results show how important network properties could be influenced, like reducing the prevalence of hubs in the network’s core and increasing local communication in the periphery, similar to the effects of more traditional self-organization methods. Therefore, from this initial study, when serendipity is opportunistically directed, it appears to behave as an effective and applicable approach to social network control.

  6. Modeling viscosity and diffusion of plasma mixtures across coupling regimes

    Science.gov (United States)

    Arnault, Philippe

    2014-10-01

    Viscosity and diffusion of plasma for pure elements and multicomponent mixtures are modeled from the high-temperature low-density weakly coupled regime to the low-temperature high-density strongly coupled regime. Thanks to an atom in jellium modeling, the effect of electron screening on the ion-ion interaction is incorporated through a self-consistent definition of the ionization. This defines an effective One Component Plasma, or an effective Binary Ionic Mixture, that is representative of the strength of the interaction. For the viscosity and the interdiffusion of mixtures, approximate kinetic expressions are supplemented by mixing laws applied to the excess viscosity and self-diffusion of pure elements. The comparisons with classical and quantum molecular dynamics results reveal deviations in the range 20--40% on average with almost no predictions further than a factor of 2 over many decades of variation. Applications in the inertial confinement fusion context could help in predicting the growth of hydrodynamic instabilities.

  7. A microscopic multiphase diffusion model of viable epidermis permeability.

    Science.gov (United States)

    Nitsche, Johannes M; Kasting, Gerald B

    2013-05-21

    A microscopic model of passive transverse mass transport of small solutes in the viable epidermal layer of human skin is formulated on the basis of a hexagonal array of cells (i.e., keratinocytes) bounded by 4-nm-thick, anisotropic lipid bilayers and separated by 1-μm layers of extracellular fluid. Gap junctions and tight junctions with adjustable permeabilities are included to modulate the transport of solutes with low membrane permeabilities. Two keratinocyte aspect ratios are considered to represent basal and spinous cells (longer) and granular cells (more flattened). The diffusion problem is solved in a unit cell using a coordinate system conforming to the hexagonal cross section, and an efficient two-dimensional treatment is applied to describe transport in both the cell membranes and intercellular spaces, given their thinness. Results are presented in terms of an effective diffusion coefficient, D¯(epi), and partition coefficient, K¯(epi/w), for a homogenized representation of the microtransport problem. Representative calculations are carried out for three small solutes-water, L-glucose, and hydrocortisone-covering a wide range of membrane permeability. The effective transport parameters and their microscopic interpretation can be employed within the context of existing three-layer models of skin transport to provide more realistic estimates of the epidermal concentrations of topically applied solutes. Copyright © 2013 Biophysical Society. Published by Elsevier Inc. All rights reserved.

  8. SCIMAP: Modelling Diffuse Pollution in Large River Basins

    Science.gov (United States)

    Milledge, D.; Heathwaite, L.; Lane, S. N.; Reaney, S. M.

    2009-12-01

    Polluted rivers are a problem for the plants and animals that require clean water to survive. Watershed scale processes can influence instream aquatic ecosystems by delivering fine sediment, solutes and organic matter from diffuse sources. To improve our rivers we need to identify the pollution sources. Models can help us to do this but these rarely address the extent to which risky land uses are hydrologically-connected, and hence able to deliver, to the drainage network. Those that do tend to apply a full hydrological scheme, which is unfeasible for large watersheds. Here we develop a risk-based modelling framework, SCIMAP, for diffuse pollution from agriculture (Nitrate, Phosphate and Fine Sediment). In each case the basis of the analysis is the joint consideration of the probability of a unit of land (25 m2 cell) producing a particular environmental risk and then of that risk reaching the river. The components share a common treatment of hydrological connectivity but differ in their treatment of each pollution type. We test and apply SCIMAP using spatially-distributed instream water quality data for some of the UK’s largest catchments to infer the processes and the associated process parameters that matter in defining their concentrations. We use these to identify a series of risky field locations, where this land use is readily connected to the river system by overland flow.

  9. Molecular Modeling of Diffusion on a Crystalline PETN Surface

    Energy Technology Data Exchange (ETDEWEB)

    Lin, P; Khare, R; Gee, R H; Weeks, B L

    2007-07-13

    Surface diffusion on a PETN crystal was investigated by treating the surface diffusion as an activated process in the formalism of transition state theory. In particular, surface diffusion on the (110) and (101) facets, as well as diffusion between these facets, were considered. We successfully obtained the potential energy barriers required for PETN surface diffusion. Our results show that the (110) surface is more thermally active than the (101) surface and PETN molecules mainly diffuses from the (110) to (101) facet. These results are in good agreement with experimental observations and previous simulations.

  10. Modelling thermal radiation and soot formation in buoyant diffusion flames

    International Nuclear Information System (INIS)

    Demarco Bull, R.A.

    2012-01-01

    The radiative heat transfer plays an important role in fire problems since it is the dominant mode of heat transfer between flames and surroundings. It controls the pyrolysis, and therefore the heat release rate, and the growth rate of the fire. In the present work a numerical study of buoyant diffusion flames is carried out, with the main objective of modelling the thermal radiative transfer and the soot formation/destruction processes. In a first step, different radiative property models were tested in benchmark configurations. It was found that the FSCK coupled with the Modest and Riazzi mixing scheme was the best compromise in terms of accuracy and computational requirements, and was a good candidate to be implemented in CFD codes dealing with fire problems. In a second step, a semi-empirical soot model, considering acetylene and benzene as precursor species for soot nucleation, was validated in laminar co flow diffusion flames over a wide range of hydrocarbons (C1-C3) and conditions. In addition, the optically-thin approximation was found to produce large discrepancies in the upper part of these small laminar flames. Reliable predictions of soot volume fractions require the use of an advanced radiation model. Then the FSCK and the semi-empirical soot model were applied to simulate laboratory-scale and intermediate-scale pool fires of methane and propane. Predicted flame structures as well as the radiant heat flux transferred to the surroundings were found to be in good agreement with the available experimental data. Finally, the interaction between radiation and turbulence was quantified. (author)

  11. A 2D model of axial symmetry for proximal tubule of an average human nephron: indicative results of diffusion, convection and absorption processes

    Science.gov (United States)

    Insfrán, J. F.; Ubal, S.; Di Paolo, y. J.

    2016-04-01

    A simplified model of a proximal convoluted tubule of an average human nephron is presented. The model considers the 2D axisymmetric flow of the luminal solution exchanging matter with the tubule walls and the peritubular fluid by means of 0D models for the epithelial cells. The tubule radius is considered to vary along the conduit due to the trans-epithelial pressure difference. The fate of more than ten typical solutes is tracked down by the model. The Navier-Stokes and Reaction-Diffusion-Advection equations (considering the electro-neutrality principle) are solved in the lumen, giving a detailed picture of the velocity, pressure and concentration fields, along with trans-membrane fluxes and tubule deformation, via coupling with the 0D model for the tubule wall. The calculations are carried out numerically by means of the finite element method. The results obtained show good agreement with those published by other authors using models that ignore the diffusive transport and disregard a detailed calculation of velocity, pressure and concentrations. This work should be seen as a first approach towards the development of a more comprehensive model of the filtration process taking place in the kidneys, which ultimately helps in devising a device that can mimic/complement the renal function.

  12. The effect of coherent stirring on the advection?condensation of water vapour

    OpenAIRE

    Tsang, Yue-Kin; Vanneste, Jacques

    2017-01-01

    Atmospheric water vapour is an essential ingredient of weather and climate. Key features of its distribution can be represented by kinematic models which treat it as a passive scalar advected by a prescribed flow and reacting through condensation. Condensation acts as a sink that maintains specific humidity below a prescribed, space-dependent saturation value. In order to investigate how the interplay between large-scale advection, small-scale turbulence and condensation controls the moisture...

  13. Modelling of multicomponent diffusion in a two-phase oxide-metal corium pool by a diffuse interface method

    International Nuclear Information System (INIS)

    Cardon, Clement

    2016-01-01

    This Ph.D. topic is focused on the modelling of stratification kinetics for an oxide-metal corium pool (U-O-Zr-steel system) in terms of multicomponent and multiphase diffusion. This work is part of a larger research effort for the development of a detailed corium pool modelling based on a CFD approach for thermal hydraulics. The overall goal is to improve the understanding of the involved phenomena and obtain closure laws for integral macroscopic models. The phase-field method coupled with an energy functional using the CALPHAD method appears to be relevant for this purpose. In a first part, we have developed a diffuse interface model in order to describe the diffusion process in the U-O system. This model has been coupled with a CALPHAD thermodynamic database and its parameterization has been developed with, in particular, an up-scaling procedure related to the interface thickness. Then, within the framework of a modelling for the U-O-Zr ternary system, we have proposed a generalization of the diffuse interface model through an assumption of local equilibrium for redox mechanisms. A particular attention was paid to the model analysis by 1D numerical simulations with a special focus on the steady state composition profiles. Finally we have applied this model to the U-O-Zr-Fe system. For that purpose, we have considered a configuration close to small-scale experimental tests of oxide-metal corium pool stratification. (author) [fr

  14. A self-consistent spin-diffusion model for micromagnetics

    KAUST Repository

    Abert, Claas

    2016-12-17

    We propose a three-dimensional micromagnetic model that dynamically solves the Landau-Lifshitz-Gilbert equation coupled to the full spin-diffusion equation. In contrast to previous methods, we solve for the magnetization dynamics and the electric potential in a self-consistent fashion. This treatment allows for an accurate description of magnetization dependent resistance changes. Moreover, the presented algorithm describes both spin accumulation due to smooth magnetization transitions and due to material interfaces as in multilayer structures. The model and its finite-element implementation are validated by current driven motion of a magnetic vortex structure. In a second experiment, the resistivity of a magnetic multilayer structure in dependence of the tilting angle of the magnetization in the different layers is investigated. Both examples show good agreement with reference simulations and experiments respectively.

  15. Decomposition in aluminium alloys: diffuse scattering and crystal modelling

    International Nuclear Information System (INIS)

    Aslam-Malik, A.

    1995-01-01

    In the present study the microstructure of metastable precipitates in Al-Ag and Al-Cu, so called pre-precipitates or Guinier-Preston (GP) zones, was investigated. In both systems important aspects of the microstructure are still controversially discussed. In Al-Ag two forms of GP zones are suggested; depending on the aging temperatures above or below about 443 K, ε- or η-zones should evolve. Differences between these two types of zones may be due to differences in internal order and/or composition. In Al-Cu the characterization of GP I zones is difficult because of the strong atomic displacements around the zones. The proper separation of short-range order and displacement scattering within a diffuse scattering experiment is still under discussion. The technique used to determine the short-range order in both alloys was diffuse scattering with neutrons and X-rays. To separate short-range order and displacement scattering, the methods of Georgopoulos-Cohen (X-ray scattering) and Borie-Sparks (neutron scattering) were used. Of main importance is the optimization of the scattering contrast and thus the scattering contribution due to short-range order. Short-range order scattering is rationalized in terms of pair correlations. Crystals may subsequently be modelled to visualize the microstructure. The Al-Ag system was investigated by diffuse X-ray wide-angle scattering and small-angle neutron scattering. The small-angle neutron scattering measurement was necessary since the GP zones in Al-Ag are almost spherical and the main scattering contribution is found close to the origin of reciprocal space. The small-angle scattering is not that important in the case of Al-Cu because the main scattering extends along (100) owing to the planar character of the GP I zones on (100) lattice planes. (author) 24 figs., 10 tabs., refs

  16. Modeling Periodic Impulsive Effects on Online TV Series Diffusion.

    Science.gov (United States)

    Fu, Peihua; Zhu, Anding; Fang, Qiwen; Wang, Xi

    Online broadcasting substantially affects the production, distribution, and profit of TV series. In addition, online word-of-mouth significantly affects the diffusion of TV series. Because on-demand streaming rates are the most important factor that influences the earnings of online video suppliers, streaming statistics and forecasting trends are valuable. In this paper, we investigate the effects of periodic impulsive stimulation and pre-launch promotion on on-demand streaming dynamics. We consider imbalanced audience feverish distribution using an impulsive susceptible-infected-removed(SIR)-like model. In addition, we perform a correlation analysis of online buzz volume based on Baidu Index data. We propose a PI-SIR model to evolve audience dynamics and translate them into on-demand streaming fluctuations, which can be observed and comprehended by online video suppliers. Six South Korean TV series datasets are used to test the model. We develop a coarse-to-fine two-step fitting scheme to estimate the model parameters, first by fitting inter-period accumulation and then by fitting inner-period feverish distribution. We find that audience members display similar viewing habits. That is, they seek new episodes every update day but fade away. This outcome means that impulsive intensity plays a crucial role in on-demand streaming diffusion. In addition, the initial audience size and online buzz are significant factors. On-demand streaming fluctuation is highly correlated with online buzz fluctuation. To stimulate audience attention and interpersonal diffusion, it is worthwhile to invest in promotion near update days. Strong pre-launch promotion is also a good marketing tool to improve overall performance. It is not advisable for online video providers to promote several popular TV series on the same update day. Inter-period accumulation is a feasible forecasting tool to predict the future trend of the on-demand streaming amount. The buzz in public social communities

  17. Modeling Periodic Impulsive Effects on Online TV Series Diffusion.

    Directory of Open Access Journals (Sweden)

    Peihua Fu

    Full Text Available Online broadcasting substantially affects the production, distribution, and profit of TV series. In addition, online word-of-mouth significantly affects the diffusion of TV series. Because on-demand streaming rates are the most important factor that influences the earnings of online video suppliers, streaming statistics and forecasting trends are valuable. In this paper, we investigate the effects of periodic impulsive stimulation and pre-launch promotion on on-demand streaming dynamics. We consider imbalanced audience feverish distribution using an impulsive susceptible-infected-removed(SIR-like model. In addition, we perform a correlation analysis of online buzz volume based on Baidu Index data.We propose a PI-SIR model to evolve audience dynamics and translate them into on-demand streaming fluctuations, which can be observed and comprehended by online video suppliers. Six South Korean TV series datasets are used to test the model. We develop a coarse-to-fine two-step fitting scheme to estimate the model parameters, first by fitting inter-period accumulation and then by fitting inner-period feverish distribution.We find that audience members display similar viewing habits. That is, they seek new episodes every update day but fade away. This outcome means that impulsive intensity plays a crucial role in on-demand streaming diffusion. In addition, the initial audience size and online buzz are significant factors. On-demand streaming fluctuation is highly correlated with online buzz fluctuation.To stimulate audience attention and interpersonal diffusion, it is worthwhile to invest in promotion near update days. Strong pre-launch promotion is also a good marketing tool to improve overall performance. It is not advisable for online video providers to promote several popular TV series on the same update day. Inter-period accumulation is a feasible forecasting tool to predict the future trend of the on-demand streaming amount. The buzz in public

  18. Mechanism of diffusive transport in molecular spider models

    Science.gov (United States)

    Semenov, Oleg; Olah, Mark J.; Stefanovic, Darko

    2011-02-01

    Recent advances in single-molecule chemistry have led to designs for artificial multipedal walkers that follow tracks of chemicals. We investigate the motion of a class of walkers, called molecular spiders, which consist of a rigid chemically inert body and several flexible enzymatic legs. The legs can reversibly bind to chemical substrates on a surface and through their enzymatic action convert them to products. The legs can also reversibly bind to products, but at a different rate. Antal and Krapivsky have proposed a model for molecular spider motion over regular one-dimensional lattices [T. Antal and P. L. Krapivsky, Phys. Rev. ENATUAS1539-375510.1103/PhysRevE.76.021121 76, 021121 (2007).]. In the model the legs hop from site to site under constraints imposed by connection to a common body. The first time a leg visits a site, the site is an uncleaved substrate, and the leg hops from this site only once it has cleaved it into a product. This cleavage happens at a rate rr=1. The effect of cleavage is to slow down the hopping rate for legs that visit a site for the first time. Along with the constraints imposed on the legs, this leads to an effective bias in the direction of unvisited sites that decreases the average time needed to visit n sites. The overall motion, however, remains diffusive in the long time limit. We have reformulated the Antal-Krapivsky model as a continuous-time Markov process and simulated many traces of this process using kinetic Monte Carlo techniques. Our simulations show a previously unpredicted transient behavior wherein spiders with small r values move superdiffusively over significant distances and times. We explain this transient period of superdiffusive behavior by describing the spider process as switching between two metastates: a diffusive state D wherein the spider moves in an unbiased manner over previously visited sites, and a boundary state B wherein the spider is on the boundary between regions of visited and unvisited sites

  19. Analytical model of diffuse reflectance spectrum of skin tissue

    Energy Technology Data Exchange (ETDEWEB)

    Lisenko, S A; Kugeiko, M M; Firago, V A [Belarusian State University, Minsk (Belarus); Sobchuk, A N [B.I. Stepanov Institute of Physics, National Academy of Sciences of Belarus, Minsk (Belarus)

    2014-01-31

    We have derived simple analytical expressions that enable highly accurate calculation of diffusely reflected light signals of skin in the spectral range from 450 to 800 nm at a distance from the region of delivery of exciting radiation. The expressions, taking into account the dependence of the detected signals on the refractive index, transport scattering coefficient, absorption coefficient and anisotropy factor of the medium, have been obtained in the approximation of a two-layer medium model (epidermis and dermis) for the same parameters of light scattering but different absorption coefficients of layers. Numerical experiments on the retrieval of the skin biophysical parameters from the diffuse reflectance spectra simulated by the Monte Carlo method show that commercially available fibre-optic spectrophotometers with a fixed distance between the radiation source and detector can reliably determine the concentration of bilirubin, oxy- and deoxyhaemoglobin in the dermis tissues and the tissue structure parameter characterising the size of its effective scatterers. We present the examples of quantitative analysis of the experimental data, confirming the correctness of estimates of biophysical parameters of skin using the obtained analytical expressions. (biophotonics)

  20. Modeling of interstitial diffusion of ion-implanted boron

    International Nuclear Information System (INIS)

    Velichko, O.I.; Knyazheva, N.V.

    2009-01-01

    A model of the interstitial diffusion of ion-implanted boron during rapid thermal annealing of silicon layers previously amorphized by implantation of germanium has been proposed. It is supposed that the boron interstitials are created continuously during annealing due to generation, dissolution, or rearrangement of the clusters of impurity atoms which are formed in the ion-implanted layers with impurity concentration above the solubility limit. The local elastic stresses arising due to the difference of boron atomic radius and atomic radius of silicon also contribute to the generation of boron interstitials. A simulation of boron redistribution during thermal annealing for 60 s at a temperature of 850 C has been carried out. The calculated profile agrees well with the experimental data. A number of the parameters of interstitial diffusion have been derived. In particular, the average migration length of nonequilibrium boron interstitials is equal to 12 nm. It was also obtained that approximately 1.94% of boron atoms were converted to the interstitial sites, participated in the fast interstitial migration, and then became immobile again transferring into a substitutional position or forming the electrically inactive complexes with crystal lattice defects. (authors)

  1. Technology diffusion in energy-economy models: The case of Danish vintage models

    DEFF Research Database (Denmark)

    Klinge Jacobsen, Henrik

    2000-01-01

    Technological progress is an important issue in long-term energy demand projections and in environmental analyses. Different assumptions on technological progress and diffusion of new technologies are among the reasons for diverging results obtained using bottom-up and top-down models for analyzi...... of residential heat demand, fuel price increases are found to accelerate diffusion by increasing replacement rates for heating equipment....

  2. Differences in Gaussian diffusion tensor imaging and non-Gaussian diffusion kurtosis imaging model-based estimates of diffusion tensor invariants in the human brain.

    Science.gov (United States)

    Lanzafame, S; Giannelli, M; Garaci, F; Floris, R; Duggento, A; Guerrisi, M; Toschi, N

    2016-05-01

    An increasing number of studies have aimed to compare diffusion tensor imaging (DTI)-related parameters [e.g., mean diffusivity (MD), fractional anisotropy (FA), radial diffusivity (RD), and axial diffusivity (AD)] to complementary new indexes [e.g., mean kurtosis (MK)/radial kurtosis (RK)/axial kurtosis (AK)] derived through diffusion kurtosis imaging (DKI) in terms of their discriminative potential about tissue disease-related microstructural alterations. Given that the DTI and DKI models provide conceptually and quantitatively different estimates of the diffusion tensor, which can also depend on fitting routine, the aim of this study was to investigate model- and algorithm-dependent differences in MD/FA/RD/AD and anisotropy mode (MO) estimates in diffusion-weighted imaging of human brain white matter. The authors employed (a) data collected from 33 healthy subjects (20-59 yr, F: 15, M: 18) within the Human Connectome Project (HCP) on a customized 3 T scanner, and (b) data from 34 healthy subjects (26-61 yr, F: 5, M: 29) acquired on a clinical 3 T scanner. The DTI model was fitted to b-value =0 and b-value =1000 s/mm(2) data while the DKI model was fitted to data comprising b-value =0, 1000 and 3000/2500 s/mm(2) [for dataset (a)/(b), respectively] through nonlinear and weighted linear least squares algorithms. In addition to MK/RK/AK maps, MD/FA/MO/RD/AD maps were estimated from both models and both algorithms. Using tract-based spatial statistics, the authors tested the null hypothesis of zero difference between the two MD/FA/MO/RD/AD estimates in brain white matter for both datasets and both algorithms. DKI-derived MD/FA/RD/AD and MO estimates were significantly higher and lower, respectively, than corresponding DTI-derived estimates. All voxelwise differences extended over most of the white matter skeleton. Fractional differences between the two estimates [(DKI - DTI)/DTI] of most invariants were seen to vary with the invariant value itself as well as with MK

  3. Reaction-diffusion modeling of hydrogen in beryllium

    Energy Technology Data Exchange (ETDEWEB)

    Wensing, Mirko; Matveev, Dmitry; Linsmeier, Christian [Forschungszentrum Juelich GmbH, Institut fuer Energie- und Klimaforschung - Plasmaphysik (Germany)

    2016-07-01

    Beryllium will be used as first-wall material for the future fusion reactor ITER as well as in the breeding blanket of DEMO. In both cases it is important to understand the mechanisms of hydrogen retention in beryllium. In earlier experiments with beryllium low-energy binding states of hydrogen were observed by thermal desorption spectroscopy (TDS) which are not yet well understood. Two candidates for these states are considered: beryllium-hydride phases within the bulk and surface effects. The retention of deuterium in beryllium is studied by a reaction rate approach using a coupled reaction diffusion system (CRDS)-model relying on ab initio data from density functional theory calculations (DFT). In this contribution we try to assess the influence of surface recombination.

  4. A reaction-diffusion model of cytosolic hydrogen peroxide.

    Science.gov (United States)

    Lim, Joseph B; Langford, Troy F; Huang, Beijing K; Deen, William M; Sikes, Hadley D

    2016-01-01

    As a signaling molecule in mammalian cells, hydrogen peroxide (H2O2) determines the thiol/disulfide oxidation state of several key proteins in the cytosol. Localization is a key concept in redox signaling; the concentrations of signaling molecules within the cell are expected to vary in time and in space in manner that is essential for function. However, as a simplification, all theoretical studies of intracellular hydrogen peroxide and many experimental studies to date have treated the cytosol as a well-mixed compartment. In this work, we incorporate our previously reported reduced kinetic model of the network of reactions that metabolize hydrogen peroxide in the cytosol into a model that explicitly treats diffusion along with reaction. We modeled a bolus addition experiment, solved the model analytically, and used the resulting equations to quantify the spatiotemporal variations in intracellular H2O2 that result from this kind of perturbation to the extracellular H2O2 concentration. We predict that micromolar bolus additions of H2O2 to suspensions of HeLa cells (0.8 × 10(9)cells/l) result in increases in the intracellular concentration that are localized near the membrane. These findings challenge the assumption that intracellular concentrations of H2O2 are increased uniformly throughout the cell during bolus addition experiments and provide a theoretical basis for differing phenotypic responses of cells to intracellular versus extracellular perturbations to H2O2 levels. Copyright © 2015 Elsevier Inc. All rights reserved.

  5. Modeling of immision from power plants using stream-diffusion model

    International Nuclear Information System (INIS)

    Kanevce, Lj.; Kanevce, G.; Markoski, A.

    1996-01-01

    Analyses of simple empirical and integral immision models, comparing with complex three dimensional differential models is given. Complex differential models needs huge computer power, so they can't be useful for practical engineering calculations. In this paper immision modeling, using stream-diffusion approach is presented. Process of dispersion is divided into two parts. First part is called stream part, it's near the source of the pollutants, and it's presented with defected turbulent jet in wind field. This part finished when the velocity of stream (jet) becomes equal with wind speed. Boundary conditions in the end of the first part, are initial for the second, called diffusion part, which is modeling with tri dimensional diffusion equation. Gradient of temperature, wind speed profile and coefficient of diffusion in this model must not be constants, they can change with the height. Presented model is much simpler than the complete meteorological differential models which calculates whole fields of meteorological parameters. Also, it is more complex and gives more valuable results for dispersion of pollutants from widely used integral and empirical models

  6. Modelling thermal radiation in buoyant turbulent diffusion flames

    Science.gov (United States)

    Consalvi, J. L.; Demarco, R.; Fuentes, A.

    2012-10-01

    This work focuses on the numerical modelling of radiative heat transfer in laboratory-scale buoyant turbulent diffusion flames. Spectral gas and soot radiation is modelled by using the Full-Spectrum Correlated-k (FSCK) method. Turbulence-Radiation Interactions (TRI) are taken into account by considering the Optically-Thin Fluctuation Approximation (OTFA), the resulting time-averaged Radiative Transfer Equation (RTE) being solved by the Finite Volume Method (FVM). Emission TRIs and the mean absorption coefficient are then closed by using a presumed probability density function (pdf) of the mixture fraction. The mean gas flow field is modelled by the Favre-averaged Navier-Stokes (FANS) equation set closed by a buoyancy-modified k-ɛ model with algebraic stress/flux models (ASM/AFM), the Steady Laminar Flamelet (SLF) model coupled with a presumed pdf approach to account for Turbulence-Chemistry Interactions, and an acetylene-based semi-empirical two-equation soot model. Two sets of experimental pool fire data are used for validation: propane pool fires 0.3 m in diameter with Heat Release Rates (HRR) of 15, 22 and 37 kW and methane pool fires 0.38 m in diameter with HRRs of 34 and 176 kW. Predicted flame structures, radiant fractions, and radiative heat fluxes on surrounding surfaces are found in satisfactory agreement with available experimental data across all the flames. In addition further computations indicate that, for the present flames, the gray approximation can be applied for soot with a minor influence on the results, resulting in a substantial gain in Computer Processing Unit (CPU) time when the FSCK is used to treat gas radiation.

  7. Puff models for simulation of fugitive radioactive emissions in atmosphere

    International Nuclear Information System (INIS)

    Costa, Camila P. da; Vilhena, Marco T.

    2009-01-01

    A puff model for the dispersion of material from fugitive radioactive emissions is presented. For vertical diffusion the model is based on general techniques for solving time dependent advection-diffusion equation: the ADMM (Advection Diffusion Multilayer Method) and GILTT (Generalized Integral Laplace Transform Technique) techniques. The first one is an analytical solution based on a discretization of the Atmospheric Boundary Layer (ABL) in sub-layers where the advection-diffusion equation is solved by the Laplace transform technique. The solution is given in integral form. The second one is a well-known hybrid method that had solved a wide class of direct and inverse problems mainly in the area of Heat Transfer and Fluid Mechanics and the solution is given in series form. Comparisons between values predicted by the models against experimental ground-level concentrations are shown. (author)

  8. Agent-based Modeling Automated: Data-driven Generation of Innovation Diffusion Models

    NARCIS (Netherlands)

    Jensen, T.; Chappin, E.J.L.

    2016-01-01

    Simulation modeling is useful to gain insights into driving mechanisms of diffusion of innovations. This study aims to introduce automation to make identification of such mechanisms with agent-based simulation modeling less costly in time and labor. We present a novel automation procedure in which

  9. Reorientation of scroll rings in an advective field

    Science.gov (United States)

    Luengviriya, Chaiya; Müller, Stefan C.; Hauser, Marcus J. B.

    2008-01-01

    When scroll rings in the excitable Belousov-Zhabotinsky reaction are subjected to an applied electrical current, a reorientation of the scroll ring is induced which is accompanied by a linear drift towards the cathode. The findings can be explained using a modified theory of local filament dynamics under parameter gradients. Numerical simulations using the Oregonator model with an additional advective term accounting for the applied electric field reproduce the experimental results and provide insights into the deformation of the structure of the filament during the reorientation.

  10. Modelling of a diffusion-sorption experiment on sandstone

    International Nuclear Information System (INIS)

    Smith, P.A.

    1989-11-01

    The results of a diffusion-sorption experiment on a sample of Darley Dale sandstone, using simulated groundwater spiked with a mixture of 125 I, 85 Sr and 137 Cs, are modelled by a one-dimensional porous medium approach in which sorption is described by Freundlich isotherms. The governing equations are solved analytically for the special case of a linear isotherm, and numerically using the computer code RANCHDIFF for non-linear isotherms. A set of time-dependent, ordinary differential equations is obtained using the Lagrange interpolation technique and integrated by Gear's variable order predictor-corrector method. It is shown that the sorption behaviour of 85 Sr can be modelled successfully by a linear isotherm, using a sorption parameter consistent with batch-sorption tests. The behaviour of 137 Cs may be modelled by a non-linear isotherm, but the amount of 137 Cs sorbed is less than that anticipated from batch-sorption tests. 125 I is assumed to be non-sorbing and is used to determine the porosity of the sandstone. (author) 10 figs., 4 tabs., 6 refs

  11. Reaction-diffusion model of hair-bundle morphogenesis.

    Science.gov (United States)

    Jacobo, Adrian; Hudspeth, A J

    2014-10-28

    The hair bundle, an apical specialization of the hair cell composed of several rows of regularly organized stereocilia and a kinocilium, is essential for mechanotransduction in the ear. Its precise organization allows the hair bundle to convert mechanical stimuli to electrical signals; mutations that alter the bundle's morphology often cause deafness. However, little is known about the proteins involved in the process of morphogenesis and how the structure of the bundle arises through interactions between these molecules. We present a mathematical model based on simple reaction-diffusion mechanisms that can reproduce the shape and organization of the hair bundle. This model suggests that the boundary of the cell and the kinocilium act as signaling centers that establish the bundle's shape. The interaction of two proteins forms a hexagonal Turing pattern--a periodic modulation of the concentrations of the morphogens, sustained by local activation and long-range inhibition of the reactants--that sets a blueprint for the location of the stereocilia. Finally we use this model to predict how different alterations to the system might impact the shape and organization of the hair bundle.

  12. Reaction–diffusion model of hair-bundle morphogenesis

    Science.gov (United States)

    Jacobo, Adrian; Hudspeth, A. J.

    2014-01-01

    The hair bundle, an apical specialization of the hair cell composed of several rows of regularly organized stereocilia and a kinocilium, is essential for mechanotransduction in the ear. Its precise organization allows the hair bundle to convert mechanical stimuli to electrical signals; mutations that alter the bundle’s morphology often cause deafness. However, little is known about the proteins involved in the process of morphogenesis and how the structure of the bundle arises through interactions between these molecules. We present a mathematical model based on simple reaction–diffusion mechanisms that can reproduce the shape and organization of the hair bundle. This model suggests that the boundary of the cell and the kinocilium act as signaling centers that establish the bundle’s shape. The interaction of two proteins forms a hexagonal Turing pattern—a periodic modulation of the concentrations of the morphogens, sustained by local activation and long-range inhibition of the reactants—that sets a blueprint for the location of the stereocilia. Finally we use this model to predict how different alterations to the system might impact the shape and organization of the hair bundle. PMID:25313064

  13. The dynamics of multimodal integration: The averaging diffusion model.

    Science.gov (United States)

    Turner, Brandon M; Gao, Juan; Koenig, Scott; Palfy, Dylan; L McClelland, James

    2017-12-01

    We combine extant theories of evidence accumulation and multi-modal integration to develop an integrated framework for modeling multimodal integration as a process that unfolds in real time. Many studies have formulated sensory processing as a dynamic process where noisy samples of evidence are accumulated until a decision is made. However, these studies are often limited to a single sensory modality. Studies of multimodal stimulus integration have focused on how best to combine different sources of information to elicit a judgment. These studies are often limited to a single time point, typically after the integration process has occurred. We address these limitations by combining the two approaches. Experimentally, we present data that allow us to study the time course of evidence accumulation within each of the visual and auditory domains as well as in a bimodal condition. Theoretically, we develop a new Averaging Diffusion Model in which the decision variable is the mean rather than the sum of evidence samples and use it as a base for comparing three alternative models of multimodal integration, allowing us to assess the optimality of this integration. The outcome reveals rich individual differences in multimodal integration: while some subjects' data are consistent with adaptive optimal integration, reweighting sources of evidence as their relative reliability changes during evidence integration, others exhibit patterns inconsistent with optimality.

  14. Toward Information Diffusion Model for Viral Marketing in Business

    OpenAIRE

    Lulwah AlSuwaidan; Mourad Ykhlef

    2016-01-01

    Current obstacles in the study of social media marketing include dealing with massive data and real-time updates have motivated to contribute solutions that can be adopted for viral marketing. Since information diffusion and social networks are the core of viral marketing, this article aims to investigate the constellation of diffusion methods for viral marketing. Studies on diffusion methods for viral marketing have applied different computational methods, but a systematic investigation of t...

  15. SEBAL-A: A Remote Sensing ET Algorithm that Accounts for Advection with Limited Data. Part I: Development and Validation

    Directory of Open Access Journals (Sweden)

    Mcebisi Mkhwanazi

    2015-11-01

    Full Text Available The Surface Energy Balance Algorithm for Land (SEBAL is one of the remote sensing (RS models that are increasingly being used to determine evapotranspiration (ET. SEBAL is a widely used model, mainly due to the fact that it requires minimum weather data, and also no prior knowledge of surface characteristics is needed. However, it has been observed that it underestimates ET under advective conditions due to its disregard of advection as another source of energy available for evaporation. A modified SEBAL model was therefore developed in this study. An advection component, which is absent in the original SEBAL, was introduced such that the energy available for evapotranspiration was a sum of net radiation and advected heat energy. The improved SEBAL model was termed SEBAL-Advection or SEBAL-A. An important aspect of the improved model is the estimation of advected energy using minimal weather data. While other RS models would require hourly weather data to be able to account for advection (e.g., METRIC, SEBAL-A only requires daily averages of limited weather data, making it appropriate even in areas where weather data at short time steps may not be available. In this study, firstly, the original SEBAL model was evaluated under advective and non-advective conditions near Rocky Ford in southeastern Colorado, a semi-arid area where afternoon advection is common occurrence. The SEBAL model was found to incur large errors when there was advection (which was indicated by higher wind speed and warm and dry air. SEBAL-A was then developed and validated in the same area under standard surface conditions, which were described as healthy alfalfa with height of 40–60 cm, without water-stress. ET values estimated using the original and modified SEBAL were compared to large weighing lysimeter-measured ET values. When the SEBAL ET was compared to SEBAL-A ET values, the latter showed improved performance, with the ET Mean Bias Error (MBE reduced from −17

  16. Coupled Gas-Liquid Diffusion in Porous Media Using the Dusty Gas Model

    Science.gov (United States)

    Webb, S. W.; Pruess, K.

    2001-12-01

    Numerous problems involve the simultaneous diffusion of chemical species in both aqueous and gaseous phases. Applications include diffusion of non-condensible gases including carbon sequestration, volatile organic compounds (VOCs), and chemicals from buried landmines. Diffusion in the unsaturated zone involves simultaneous transport in the aqueous and gaseous pathways. Calculation of diffusion in the individual phases is straightforward. However, for simultaneous diffusion in both phases, simply adding diffusive fluxes in gas and liquid phases will in general not be correct. Proper treatment of diffusion in multiphase conditions must take into account the coupling between diffusion and phase partitioning. Coupled gas-liquid diffusion was previously considered using Fick's law for both aqueous and gaseous diffusion. The diffusive strength term was harmonically weighted at the interface to enforce mass conservation. Results showed that the coupling effects are significant, and that uncoupled results can seriously underestimate diffusion across a capillary fringe. In the present work, the Dusty Gas Model (DGM) has been used to model gas diffusion. The DGM is a more fundamentally sound model for gas diffusion than Fick's law. However, the formulation of multiphase diffusion coupled with gas-liquid phase partitioning becomes considerably more complicated, and mass conservation must be explicitly imposed on each component through solution for the appropriate interface conditions. For higher permeability and trace gas conditions, the two models (Fick's law and DGM) give similar results as expected. However, for lower permeability media and non-trace gas conditions, significant differences exist. This work was supported by the U.S Department of Energy under Contracts No. DE-AC04-94AL85000 and DE-AC03-76SF00098.

  17. Nonlinear variational models for reaction and diffusion systems

    International Nuclear Information System (INIS)

    Tanyi, G.E.

    1983-08-01

    There exists a natural metric w.r.t. which the density dependent diffusion operator is harmonic in the sense of Eells and Sampson. A physical corollary of this statement is the property that any two regular points on the orbit of a reaction or diffusion operator can be connected by a path along which the reaction rate is constant. (author)

  18. Subgrid models for mass and thermal diffusion in turbulent mixing

    Energy Technology Data Exchange (ETDEWEB)

    Sharp, David H [Los Alamos National Laboratory; Lim, Hyunkyung [STONY BROOK UNIV; Li, Xiao - Lin [STONY BROOK UNIV; Gilmm, James G [STONY BROOK UNIV

    2008-01-01

    We are concerned with the chaotic flow fields of turbulent mixing. Chaotic flow is found in an extreme form in multiply shocked Richtmyer-Meshkov unstable flows. The goal of a converged simulation for this problem is twofold: to obtain converged solutions for macro solution features, such as the trajectories of the principal shock waves, mixing zone edges, and mean densities and velocities within each phase, and also for such micro solution features as the joint probability distributions of the temperature and species concentration. We introduce parameterized subgrid models of mass and thermal diffusion, to define large eddy simulations (LES) that replicate the micro features observed in the direct numerical simulation (DNS). The Schmidt numbers and Prandtl numbers are chosen to represent typical liquid, gas and plasma parameter values. Our main result is to explore the variation of the Schmidt, Prandtl and Reynolds numbers by three orders of magnitude, and the mesh by a factor of 8 per linear dimension (up to 3200 cells per dimension), to allow exploration of both DNS and LES regimes and verification of the simulations for both macro and micro observables. We find mesh convergence for key properties describing the molecular level of mixing, including chemical reaction rates between the distinct fluid species. We find results nearly independent of Reynolds number for Re 300, 6000, 600K . Methodologically, the results are also new. In common with the shock capturing community, we allow and maintain sharp solution gradients, and we enhance these gradients through use of front tracking. In common with the turbulence modeling community, we include subgrid scale models with no adjustable parameters for LES. To the authors' knowledge, these two methodologies have not been previously combined. In contrast to both of these methodologies, our use of Front Tracking, with DNS or LES resolution of the momentum equation at or near the Kolmogorov scale, but without

  19. Synchronized stability in a reaction–diffusion neural network model

    International Nuclear Information System (INIS)

    Wang, Ling; Zhao, Hongyong

    2014-01-01

    The reaction–diffusion neural network consisting of a pair of identical tri-neuron loops is considered. We present detailed discussions about the synchronized stability and Hopf bifurcation, deducing the non-trivial role that delay plays in different locations. The corresponding numerical simulations are used to illustrate the effectiveness of the obtained results. In addition, the numerical results about the effects of diffusion reveal that diffusion may speed up the tendency to synchronization and induce the synchronized equilibrium point to be stable. Furthermore, if the parameters are located in appropriate regions, multiple unstability and bistability or unstability and bistability may coexist. - Highlights: • Point to non-trivial role that τ plays in different positions. • Diffusion speeds up the tendency to synchronization. • Diffusion induces the synchronized equilibrium point to be stable. • The coexistence of multiple unstability and bistability or unstability and bistability

  20. Bounds for perpetual American option prices in a jump diffusion model

    OpenAIRE

    Ekström, Erik

    2006-01-01

    We provide bounds for perpetual American option prices in a jump diffusion model in terms of American option prices in the standard Black-Scholes model. We also investigate the dependence of the bounds on different parameters of the model.

  1. Diffusion properties of model compounds in artificial sebum.

    Science.gov (United States)

    Valiveti, Satyanarayana; Lu, Guang Wei

    2007-12-10

    Sebaceous glands secrete an oily sebum into the hair follicle. Hence, it is necessary to understand the drug partition and diffusion properties in the sebum for the targeted delivery of therapeutic agents into the sebum-filled hair follicle. A new method was developed and used for determination of sebum flux of topical therapeutic agents and other model compounds. The drug transport through artificial sebum was conducted using sebum loaded filter (Transwell) as a membrane, drug suspensions as donor phases and HP-beta-CD buffer solution as a receiver phase. The experiment was performed at 37 degrees C for 2h. The results of the drug transport studies indicate that the flux (J(sebum)) through the artificial sebum is compound dependent and a bell-shaped curve was observed when logJ(s) versus alkyl side chain length of the compounds that proved to be different from the curves obtained upon plotting logJ skin versus clogP for the same compounds, indicating the possibility to select appropriate compounds for sebum targeted delivery based on the differences in the skin flux and sebum transport profiles of the molecules.

  2. A non-local structural derivative model for characterization of ultraslow diffusion in dense colloids

    Science.gov (United States)

    Liang, Yingjie; Chen, Wen

    2018-03-01

    Ultraslow diffusion has been observed in numerous complicated systems. Its mean squared displacement (MSD) is not a power law function of time, but instead a logarithmic function, and in some cases grows even more slowly than the logarithmic rate. The distributed-order fractional diffusion equation model simply does not work for the general ultraslow diffusion. Recent study has used the local structural derivative to describe ultraslow diffusion dynamics by using the inverse Mittag-Leffler function as the structural function, in which the MSD is a function of inverse Mittag-Leffler function. In this study, a new stretched logarithmic diffusion law and its underlying non-local structural derivative diffusion model are proposed to characterize the ultraslow diffusion in aging dense colloidal glass at both the short and long waiting times. It is observed that the aging dynamics of dense colloids is a class of the stretched logarithmic ultraslow diffusion processes. Compared with the power, the logarithmic, and the inverse Mittag-Leffler diffusion laws, the stretched logarithmic diffusion law has better precision in fitting the MSD of the colloidal particles at high densities. The corresponding non-local structural derivative diffusion equation manifests clear physical mechanism, and its structural function is equivalent to the first-order derivative of the MSD.

  3. Diffusion in clay - experimental techniques and theoretical models

    International Nuclear Information System (INIS)

    Eriksen, T.E.; Jacobsson, A.

    1984-01-01

    A large number of experiments have been carried out by this and adjacent research groups to assess the diffusivity of a wide variety of dissolved species such as cations anions, macromolecules and gases in watersaturated clay at differing compaction. The results have been reported in a series of KBS-technical reports. This report is a summary of the experiences gained by these experiments. Recommended experimental methods are described and a methodology to treat and interpret the experimental data is outlined. The mechanisms for diffusion in clay are also discussed in some detail - especially the influence of charge, molecular size and hydrolysis of the diffusing species. (author)

  4. Nuclear interaction potential in a folded-Yukawa model with diffuse densities

    International Nuclear Information System (INIS)

    Randrup, J.

    1975-09-01

    The folded-Yukawa model for the nuclear interaction potential is generalized to diffuse density distributions which are generated by folding a Yukawa function into sharp generating distributions. The effect of a finite density diffuseness or of a finite interaction range is studied. The Proximity Formula corresponding to the generalized model is derived and numerical comparison is made with the exact results. (8 figures)

  5. Time-varying boundaries for diffusion models of decision making and response time

    NARCIS (Netherlands)

    Zhang, S.; Lee, M.D.; Vandekerckhove, J.; Maris, G.; Wagenmakers, E.-J.

    2014-01-01

    Diffusion models are widely-used and successful accounts of the time course of two-choice decision making. Most diffusion models assume constant boundaries, which are the threshold levels of evidence that must be sampled from a stimulus to reach a decision. We summarize theoretical results from

  6. Hierarchical Bayesian modeling of the space - time diffusion patterns of cholera epidemic in Kumasi, Ghana

    NARCIS (Netherlands)

    Osei, Frank B.; Osei, F.B.; Duker, Alfred A.; Stein, A.

    2011-01-01

    This study analyses the joint effects of the two transmission routes of cholera on the space-time diffusion dynamics. Statistical models are developed and presented to investigate the transmission network routes of cholera diffusion. A hierarchical Bayesian modelling approach is employed for a joint

  7. A mathematical model in charactering chloride diffusivity in unsaturated cementitious material

    NARCIS (Netherlands)

    Zhang, Y.; Ye, G.; Pecur, I.B.; Baricevic, A.; Stirmer, N; Bjegovic, D.

    2017-01-01

    In this paper, a new analytic model for predicting chloride diffusivity in unsaturated cementitious materials is developed based on conductivity theory and Nernst-Einstein equation. The model specifies that chloride diffusivity in unsaturated cementitious materials can be mathematically described as

  8. Identification of advective entry of soil-gas radon into a crawl space covered with sheets of polyethylene foil

    Energy Technology Data Exchange (ETDEWEB)

    Andersen, C. [Risoe National Lab., Dept. of Nucl. Safety Res. and Nucl. Facilities, Roskilde (Denmark); Koopmanns, M.; Meijer, R.J. de [Kernfysische Versneller Inst., Environmental Radioactivity Res., Groningen (Netherlands)

    1996-04-01

    To assess the effectiveness of mitigative measures against radon ({sup 222}Rn) entry into houses, experiments were conducted in a crawl-space house where the dirt floor of the crawl space was covered with sheets of 0.23 mm polyethylene foil fixed to the walls. The radon concentration was measured below the foil and in the crawl space together with environmental variables such as indoor-outdoor pressure differences. The experimental data was analyzed using various types of models including a simplistic mass-balance model, a regression model, and a two-dimensional numerical model based on Darcy flow or soil gas and combined diffusive and advective transport of radon. The main outcome of the work was that: (i) The soil-gas entry rate per pascal depressurization was at the order of 1 m{sup 3} h{sup -1}, (ii) the stack-related part of the depressurization of the crawl space (approx. 0.1 Pa deg. C{sup -1}) was controlled by the temperature difference between the living room of the house and the outdoors (not by the difference between the crawl space and the outdoors), (iii) that part of the wind-related depressurization that was measured by the pressure transducers seemed to force radon into the crawl space in the same proportion as the stack-related part of the depressurization, (iv) the ratio of advective and diffusive entry was approx. 0.7, when the crawl space was depressurized 1.5 Pa, (v) the effective diffusivity of the foil was found to be three orders of magnitude larger than that measured in the laboratory (the enhanced diffusivity was most likely caused by leaks in the foil and by mixing fans located in the crawl space), and (vi) there was no measurable mitigative impact of having the sheets of foil on the crawl-space floor even if the crawl space was artificially pressurized or depressurized. (au) 28 tabs., 36 ills., 61 refs.

  9. Diffusion-controlled reactions modeling in Geant4-DNA

    International Nuclear Information System (INIS)

    Karamitros, M.; Luan, S.; Bernal, M.A.; Allison, J.; Baldacchino, G.; Davidkova, M.; Francis, Z.; Friedland, W.; Ivantchenko, V.; Ivantchenko, A.; Mantero, A.; Nieminem, P.; Santin, G.; Tran, H.N.; Stepan, V.; Incerti, S.

    2014-01-01

    Context Under irradiation, a biological system undergoes a cascade of chemical reactions that can lead to an alteration of its normal operation. There are different types of radiation and many competing reactions. As a result the kinetics of chemical species is extremely complex. The simulation becomes then a powerful tool which, by describing the basic principles of chemical reactions, can reveal the dynamics of the macroscopic system. To understand the dynamics of biological systems under radiation, since the 80s there have been on-going efforts carried out by several research groups to establish a mechanistic model that consists in describing all the physical, chemical and biological phenomena following the irradiation of single cells. This approach is generally divided into a succession of stages that follow each other in time: (1) the physical stage, where the ionizing particles interact directly with the biological material; (2) the physico-chemical stage, where the targeted molecules release their energy by dissociating, creating new chemical species; (3) the chemical stage, where the new chemical species interact with each other or with the biomolecules; (4) the biological stage, where the repairing mechanisms of the cell come into play. This article focuses on the modeling of the chemical stage. Method This article presents a general method of speeding-up chemical reaction simulations in fluids based on the Smoluchowski equation and Monte-Carlo methods, where all molecules are explicitly simulated and the solvent is treated as a continuum. The model describes diffusion-controlled reactions. This method has been implemented in Geant4-DNA. The keys to the new algorithm include: (1) the combination of a method to compute time steps dynamically with a Brownian bridge process to account for chemical reactions, which avoids costly fixed time step simulations; (2) a k–d tree data structure for quickly locating, for a given molecule, its closest reactants. The

  10. Extracting surface diffusion coefficients from batch adsorption measurement data: application of the classic Langmuir kinetics model.

    Science.gov (United States)

    Chu, Khim Hoong

    2017-11-09

    Surface diffusion coefficients may be estimated by fitting solutions of a diffusion model to batch kinetic data. For non-linear systems, a numerical solution of the diffusion model's governing equations is generally required. We report here the application of the classic Langmuir kinetics model to extract surface diffusion coefficients from batch kinetic data. The use of the Langmuir kinetics model in lieu of the conventional surface diffusion model allows derivation of an analytical expression. The parameter estimation procedure requires determining the Langmuir rate coefficient from which the pertinent surface diffusion coefficient is calculated. Surface diffusion coefficients within the 10 -9 to 10 -6  cm 2 /s range obtained by fitting the Langmuir kinetics model to experimental kinetic data taken from the literature are found to be consistent with the corresponding values obtained from the traditional surface diffusion model. The virtue of this simplified parameter estimation method is that it reduces the computational complexity as the analytical expression involves only an algebraic equation in closed form which is easily evaluated by spreadsheet computation.

  11. Models for the estimation of diffuse solar radiation for typical cities in Turkey

    International Nuclear Information System (INIS)

    Bakirci, Kadir

    2015-01-01

    In solar energy applications, diffuse solar radiation component is required. Solar radiation data particularly in terms of diffuse component are not readily affordable, because of high price of measurements as well as difficulties in their maintenance and calibration. In this study, new empirical models for predicting the monthly mean diffuse solar radiation on a horizontal surface for typical cities in Turkey are established. Therefore, fifteen empirical models from studies in the literature are used. Also, eighteen diffuse solar radiation models are developed using long term sunshine duration and global solar radiation data. The accuracy of the developed models is evaluated in terms of different statistical indicators. It is found that the best performance is achieved for the third-order polynomial model based on sunshine duration and clearness index. - Highlights: • Diffuse radiation is given as a function of clearness index and sunshine fraction. • The diffuse radiation is an important parameter in solar energy applications. • The diffuse radiation measurement is for limited periods and it is very rare. • The new models can be used to estimate monthly average diffuse solar radiation. • The accuracy of the models is evaluated on the basis of statistical indicators

  12. Penyelesaian Numerik Advection Equation 1 Dimensi dengan EFG-DGM

    Directory of Open Access Journals (Sweden)

    Kresno Wikan Sadono

    2016-10-01

    Full Text Available Differential equation can be used to model various phenomena in science and engineering. Numerical method is the most common method used in solving DE. Numerical methods that popular today are finite difference method (FDM, finite element method (FEM dan discontinuous Galerkin method (DGM, which the method includes mesh based. Lately, the developing methods, that are not based on a mesh, which the nodes directly spread in domain, called meshfree or meshless. Element free Galerkin method (EFG, Petrov-Galerkin meshless (MLPG, reproducing kernel particle method (RKPM and radial basis function (RBF fall into the category meshless or meshfree. Time integration generally use an explicit Runge Kutta 4th order, Newmark- , HHT- , Wilson-  dll. This research was carried out numerical simulations DE, by combining the EFG method to solve the domain space and time integration with DGM methods. EFG using the complete order polynomial 1, and DGM used polynomial order 1. The equation used advection equation in one dimension. EFG-DGM comparison with analytical results also performed. The simulation results show the method EFG-DGM match the one-dimensional advection equations well.

  13. Advection by ocean currents modifies phytoplankton size structure.

    Science.gov (United States)

    Font-Muñoz, Joan S; Jordi, Antoni; Tuval, Idan; Arrieta, Jorge; Anglès, Sílvia; Basterretxea, Gotzon

    2017-05-01

    Advection by ocean currents modifies phytoplankton size structure at small scales (1-10 cm) by aggregating cells in different regions of the flow depending on their size. This effect is caused by the inertia of the cells relative to the displaced fluid. It is considered that, at larger scales (greater than or equal to 1 km), biological processes regulate the heterogeneity in size structure. Here, we provide observational evidence of heterogeneity in phytoplankton size structure driven by ocean currents at relatively large scales (1-10 km). Our results reveal changes in the phytoplankton size distribution associated with the coastal circulation patterns. A numerical model that incorporates the inertial properties of phytoplankton confirms the role of advection on the distribution of phytoplankton according to their size except in areas with enhanced nutrient inputs where phytoplankton dynamics is ruled by other processes. The observed preferential concentration mechanism has important ecological consequences that range from the phytoplankton level to the whole ecosystem. © 2017 The Author(s).

  14. Advection of passive scalars induced by a bay-trapped nonstationary vortex

    Science.gov (United States)

    Ryzhov, Eugene A.; Koshel, Konstantin V.

    2018-03-01

    A simple model of fluid particle advection induced by the interaction of a point vortex and incident plane flow occurring near a curved boundary is analyzed. The use of the curved boundary in this case is aimed at mimicking the geometry of an isolated bay of a circular shape. An introduction of such a boundary to the model results in the appearance of retention zones, where the vortex can be permanently trapped being either stationary or periodically oscillating. When stationary, it induces a steady velocity field that in turn ensures regular advection of nearby fluid particles. When the vortex oscillates periodically, the induced velocity field turns unsteady leading to the manifestation of chaotic advection of fluid particles. We show that the size of the fluid region engaged into chaotic advection increases almost monotonically with the increased magnitude of the vortex oscillations provided the magnitude remains relatively small. The monotonicity is accounted for the fact that the frequency of the vortex oscillations incommensurable with the proper frequency of fluid particle rotations in the steady state. Another point of interest is that it is demonstrated that bounded regions, in which the vortex may be trapped, can appear even at a significant distance from the bay. Making use of a Lagrangian indicator, examples of fluid particle advection induced by the periodic motion of the vortex inside the bay are adduced.

  15. Estimation of the advection effects induced by surface heterogeneities in the surface energy budget

    Science.gov (United States)

    Cuxart, Joan; Wrenger, Burkhard; Martínez-Villagrasa, Daniel; Reuder, Joachim; Jonassen, Marius O.; Jiménez, Maria A.; Lothon, Marie; Lohou, Fabienne; Hartogensis, Oscar; Dünnermann, Jens; Conangla, Laura; Garai, Anirban

    2016-07-01

    The effect of terrain heterogeneities in one-point measurements is a continuous subject of discussion. Here we focus on the order of magnitude of the advection term in the equation of the evolution of temperature as generated by documented terrain heterogeneities and we estimate its importance as a term in the surface energy budget (SEB), for which the turbulent fluxes are computed using the eddy-correlation method. The heterogeneities are estimated from satellite and model fields for scales near 1 km or broader, while the smaller scales are estimated through direct measurements with remotely piloted aircraft and thermal cameras and also by high-resolution modelling. The variability of the surface temperature fields is not found to decrease clearly with increasing resolution, and consequently the advection term becomes more important as the scales become finer. The advection term provides non-significant values to the SEB at scales larger than a few kilometres. In contrast, surface heterogeneities at the metre scale yield large values of the advection, which are probably only significant in the first centimetres above the ground. The motions that seem to contribute significantly to the advection term in the SEB equation in our case are roughly those around the hectometre scales.

  16. Estimation of the advection effects induced by surface heterogeneities in the surface energy budget

    Directory of Open Access Journals (Sweden)

    J. Cuxart

    2016-07-01

    Full Text Available The effect of terrain heterogeneities in one-point measurements is a continuous subject of discussion. Here we focus on the order of magnitude of the advection term in the equation of the evolution of temperature as generated by documented terrain heterogeneities and we estimate its importance as a term in the surface energy budget (SEB, for which the turbulent fluxes are computed using the eddy-correlation method. The heterogeneities are estimated from satellite and model fields for scales near 1 km or broader, while the smaller scales are estimated through direct measurements with remotely piloted aircraft and thermal cameras and also by high-resolution modelling. The variability of the surface temperature fields is not found to decrease clearly with increasing resolution, and consequently the advection term becomes more important as the scales become finer. The advection term provides non-significant values to the SEB at scales larger than a few kilometres. In contrast, surface heterogeneities at the metre scale yield large values of the advection, which are probably only significant in the first centimetres above the ground. The motions that seem to contribute significantly to the advection term in the SEB equation in our case are roughly those around the hectometre scales.

  17. Modeling of Flow and Water Quality Processes with Finite Volume Method due to Spreading and Dispersion of Petrochemical Pollution in the Hydro-Environments

    Science.gov (United States)

    Sarhadi Zadeh, Ehsan; Hejazi, Kourosh

    2009-11-01

    Having two water frontiers, namely (everlasting) Persian Gulf and Oman Sea in the south and Caspian Sea in the north, intense dependence on extracting and exporting oil, especially via marine fleets and ever-increasing development of petrochemical industry, Iran is exposed to severe environmental damages caused by oil and petrochemical industries. This essay investigates how oil spill is diffused and its environmental pollution is spread. The movement of oil spill, and its diffusion in water and its effects on water and the environment has been simulated by developing a Depth-Averaged numerical model and using the Finite Volume method. The existing models are not efficient enough to fulfill current modeling needs. The developed model uses the parameters useful in the advection and diffusion of oil pollutions in a model appropriate for predicting the transport of oil spill. Since the Navier-Stokes Equations play an important role in the advection and diffusion of oil pollutions, it is highly important to choose an appropriate numerical method in the advection and diffusion section. In this essay, choosing the methods used in the advection and diffusion have been emphasized and highly-accurate algorithms has been used in the advection terms. These algorithms are not present in similar models. The resulting equations have been solved using the ADI method. This method solves the unknown parameters with solving a Penta-Diagonal matrix in each time step. It does so without sacrificing the desired precision.

  18. Nonexistence of nonconstant steady-state solutions in a triangular cross-diffusion model

    Science.gov (United States)

    Lou, Yuan; Tao, Youshan; Winkler, Michael

    2017-05-01

    In this paper we study the Shigesada-Kawasaki-Teramoto model for two competing species with triangular cross-diffusion. We determine explicit parameter ranges within which the model exclusively possesses constant steady state solutions.

  19. Prediction model for the diffusion length in silicon-based solar cells

    Energy Technology Data Exchange (ETDEWEB)

    Cheknane, A [Laboratoire d' Etude et Developpement des Materiaux Semiconducteurs et Dielectrques, Universite Amar Telidji de Laghouat, BP 37G, Laghouat 03000 (Algeria); Benouaz, T, E-mail: cheknanali@yahoo.co [Laboratoire de Modelisation, Universite Abou BakarBelkaid de Tlemcen Algerie (Algeria)

    2009-07-15

    A novel approach to compute diffusion lengths in solar cells is presented. Thus, a simulation is done; it aims to give computational support to the general development of a neural networks (NNs), which is a very powerful predictive modelling technique used to predict the diffusion length in mono-crystalline silicon solar cells. Furthermore, the computation of the diffusion length and the comparison with measurement data, using the infrared injection method, are presented and discussed.

  20. Microstructural changes in ischemic cortical gray matter predicted by a model of diffusion-weighted MRI

    DEFF Research Database (Denmark)

    Vestergaard-Poulsen, Peter; Hansen, Brian; Østergaard, Leif

    2007-01-01

    PURPOSE: To understand the diffusion attenuated MR signal from normal and ischemic brain tissue in order to extract structural and physiological information using mathematical modeling, taking into account the transverse relaxation rates in gray matter. MATERIALS AND METHODS: We fit our diffusion...... compartment. A global optimum was found from a wide range of parameter permutations using cluster computing. We also present simulations of cell swelling and changes of exchange rate and intracellular diffusion as possible cellular mechanisms in ischemia. RESULTS: Our model estimates an extracellular volume...... fraction of 0.19 in accordance with the accepted value from histology. The absolute apparent diffusion coefficient obtained from the model was similar to that of experiments. The model and the experimental results indicate significant differences in diffusion and transverse relaxation between the tissue...

  1. Climate stability for a Sellers-type model. [atmospheric diffusive energy balance model

    Science.gov (United States)

    Ghil, M.

    1976-01-01

    We study a diffusive energy-balance climate model governed by a nonlinear parabolic partial differential equation. Three positive steady-state solutions of this equation are found; they correspond to three possible climates of our planet: an interglacial (nearly identical to the present climate), a glacial, and a completely ice-covered earth. We consider also models similar to the main one studied, and determine the number of their steady states. All the models have albedo continuously varying with latitude and temperature, and entirely diffusive horizontal heat transfer. The diffusion is taken to be nonlinear as well as linear. We investigate the stability under small perturbations of the main model's climates. A stability criterion is derived, and its application shows that the 'present climate' and the 'deep freeze' are stable, whereas the model's glacial is unstable. A variational principle is introduced to confirm the results of this stability analysis. For a sufficient decrease in solar radiation (about 2%) the glacial and interglacial solutions disappear, leaving the ice-covered earth as the only possible climate.

  2. Comparison of experimental methods for estimating matrix diffusion coefficients for contaminant transport modeling

    Science.gov (United States)

    Telfeyan, Katherine; Ware, S. Doug; Reimus, Paul W.; Birdsell, Kay H.

    2018-02-01

    Diffusion cell and diffusion wafer experiments were conducted to compare methods for estimating effective matrix diffusion coefficients in rock core samples from Pahute Mesa at the Nevada Nuclear Security Site (NNSS). A diffusion wafer method, in which a solute diffuses out of a rock matrix that is pre-saturated with water containing the solute, is presented as a simpler alternative to the traditional through-diffusion (diffusion cell) method. Both methods yielded estimates of effective matrix diffusion coefficients that were within the range of values previously reported for NNSS volcanic rocks. The difference between the estimates of the two methods ranged from 14 to 30%, and there was no systematic high or low bias of one method relative to the other. From a transport modeling perspective, these differences are relatively minor when one considers that other variables (e.g., fracture apertures, fracture spacings) influence matrix diffusion to a greater degree and tend to have greater uncertainty than effective matrix diffusion coefficients. For the same relative random errors in concentration measurements, the diffusion cell method yields effective matrix diffusion coefficient estimates that have less uncertainty than the wafer method. However, the wafer method is easier and less costly to implement and yields estimates more quickly, thus allowing a greater number of samples to be analyzed for the same cost and time. Given the relatively good agreement between the methods, and the lack of any apparent bias between the methods, the diffusion wafer method appears to offer advantages over the diffusion cell method if better statistical representation of a given set of rock samples is desired.

  3. Comparison of experimental methods for estimating matrix diffusion coefficients for contaminant transport modeling.

    Science.gov (United States)

    Telfeyan, Katherine; Ware, S Doug; Reimus, Paul W; Birdsell, Kay H

    2018-02-01

    Diffusion cell and diffusion wafer experiments were conducted to compare methods for estimating effective matrix diffusion coefficients in rock core samples from Pahute Mesa at the Nevada Nuclear Security Site (NNSS). A diffusion wafer method, in which a solute diffuses out of a rock matrix that is pre-saturated with water containing the solute, is presented as a simpler alternative to the traditional through-diffusion (diffusion cell) method. Both methods yielded estimates of effective matrix diffusion coefficients that were within the range of values previously reported for NNSS volcanic rocks. The difference between the estimates of the two methods ranged from 14 to 30%, and there was no systematic high or low bias of one method relative to the other. From a transport modeling perspective, these differences are relatively minor when one considers that other variables (e.g., fracture apertures, fracture spacings) influence matrix diffusion to a greater degree and tend to have greater uncertainty than effective matrix diffusion coefficients. For the same relative random errors in concentration measurements, the diffusion cell method yields effective matrix diffusion coefficient estimates that have less uncertainty than the wafer method. However, the wafer method is easier and less costly to implement and yields estimates more quickly, thus allowing a greater number of samples to be analyzed for the same cost and time. Given the relatively good agreement between the methods, and the lack of any apparent bias between the methods, the diffusion wafer method appears to offer advantages over the diffusion cell method if better statistical representation of a given set of rock samples is desired. Copyright © 2018 Elsevier B.V. All rights reserved.

  4. Comparison of Experimental Methods for Estimating Matrix Diffusion Coefficients for Contaminant Transport Modeling

    Energy Technology Data Exchange (ETDEWEB)

    Telfeyan, Katherine Christina [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Ware, Stuart Douglas [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Reimus, Paul William [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Birdsell, Kay Hanson [Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

    2017-11-06

    Diffusion cell and diffusion wafer experiments were conducted to compare methods for estimating matrix diffusion coefficients in rock core samples from Pahute Mesa at the Nevada Nuclear Security Site (NNSS). A diffusion wafer method, in which a solute diffuses out of a rock matrix that is pre-saturated with water containing the solute, is presented as a simpler alternative to the traditional through-diffusion (diffusion cell) method. Both methods yielded estimates of matrix diffusion coefficients that were within the range of values previously reported for NNSS volcanic rocks. The difference between the estimates of the two methods ranged from 14 to 30%, and there was no systematic high or low bias of one method relative to the other. From a transport modeling perspective, these differences are relatively minor when one considers that other variables (e.g., fracture apertures, fracture spacings) influence matrix diffusion to a greater degree and tend to have greater uncertainty than diffusion coefficients. For the same relative random errors in concentration measurements, the diffusion cell method yields diffusion coefficient estimates that have less uncertainty than the wafer method. However, the wafer method is easier and less costly to implement and yields estimates more quickly, thus allowing a greater number of samples to be analyzed for the same cost and time. Given the relatively good agreement between the methods, and the lack of any apparent bias between the methods, the diffusion wafer method appears to offer advantages over the diffusion cell method if better statistical representation of a given set of rock samples is desired.

  5. Influence of fast advective flows on pattern formation of Dictyostelium discoideum

    Science.gov (United States)

    Bae, Albert; Zykov, Vladimir; Bodenschatz, Eberhard

    2018-01-01

    We report experimental and numerical results on pattern formation of self-organizing Dictyostelium discoideum cells in a microfluidic setup under a constant buffer flow. The external flow advects the signaling molecule cyclic adenosine monophosphate (cAMP) downstream, while the chemotactic cells attached to the solid substrate are not transported with the flow. At high flow velocities, elongated cAMP waves are formed that cover the whole length of the channel and propagate both parallel and perpendicular to the flow direction. While the wave period and transverse propagation velocity are constant, parallel wave velocity and the wave width increase linearly with the imposed flow. We also observe that the acquired wave shape is highly dependent on the wave generation site and the strength of the imposed flow. We compared the wave shape and velocity with numerical simulations performed using a reaction-diffusion model and found excellent agreement. These results are expected to play an important role in understanding the process of pattern formation and aggregation of D. discoideum that may experience fluid flows in its natural habitat. PMID:29590179

  6. Information diffusion, Facebook clusters, and the simplicial model of social aggregation: a computational simulation of simplicial diffusers for community health interventions.

    Science.gov (United States)

    Kee, Kerk F; Sparks, Lisa; Struppa, Daniele C; Mannucci, Mirco A; Damiano, Alberto

    2016-01-01

    By integrating the simplicial model of social aggregation with existing research on opinion leadership and diffusion networks, this article introduces the constructs of simplicial diffusers (mathematically defined as nodes embedded in simplexes; a simplex is a socially bonded cluster) and simplicial diffusing sets (mathematically defined as minimal covers of a simplicial complex; a simplicial complex is a social aggregation in which socially bonded clusters are embedded) to propose a strategic approach for information diffusion of cancer screenings as a health intervention on Facebook for community cancer prevention and control. This approach is novel in its incorporation of interpersonally bonded clusters, culturally distinct subgroups, and different united social entities that coexist within a larger community into a computational simulation to select sets of simplicial diffusers with the highest degree of information diffusion for health intervention dissemination. The unique contributions of the article also include seven propositions and five algorithmic steps for computationally modeling the simplicial model with Facebook data.

  7. Continuous Dependence in Front Propagation for Convective Reaction-Diffusion Models with Aggregative Movements

    Directory of Open Access Journals (Sweden)

    Luisa Malaguti

    2011-01-01

    Full Text Available The paper deals with a degenerate reaction-diffusion equation, including aggregative movements and convective terms. The model also incorporates a real parameter causing the change from a purely diffusive to a diffusive-aggregative and to a purely aggregative regime. Existence and qualitative properties of traveling wave solutions are investigated, and estimates of their threshold speeds are furnished. Further, the continuous dependence of the threshold wave speed and of the wave profiles on a real parameter is studied, both when the process maintains its diffusion-aggregation nature and when it switches from it to another regime.

  8. Diffusion of PAH in potato and carrot slices and application for a potato model

    DEFF Research Database (Denmark)

    Trapp, Stefan; Cammarano, A.; Capri, E.

    2007-01-01

    A method for quantifying the effect of medium composition on the diffusive mass transfer of hydrophobic organic chemicals through thin layers was applied to plant tissue. The method employs two silicone disks, one serving as source and one as sink for a series of PAHs diffusing through thin layers...... of water, potato tissue, and carrot tissue. Naphthalene, phenanthrene, anthracene, and fluoranthene served as model substances. Their transfer from source to sink disk was measured by HPLC to determine a velocity rate constant proportional to the diffusive conductivity. The diffusive flux through the plant...

  9. Characteristics and Diffusion Model of the Individual Knowledge in the WeChat Mode

    Directory of Open Access Journals (Sweden)

    Zhang Lingzhi

    2017-12-01

    Full Text Available [Purpose/significance] According to the model of the individual knowledge diffusion, we conduct a behavior research and analyze the characteristics of that based on WeChat which is the most popular communication platform in China.[Method/process] By analyzing the methods of the diffusion on WeChat, we analyzed the characteristics of the individual knowledge diffusion. [Result/conclusion]The characteristics of the individual knowledge diffusion include real-time, short-term, speciality, friendship and transmission.

  10. Diffusion-controlled reactions modeling in Geant4-DNA

    Czech Academy of Sciences Publication Activity Database

    Karamitros, M.; Luan, S.; Bernal, M. A.; Allison, J.; Baldacchino, G.; Davídková, Marie; Francis, Z.; Friedland, W.; Ivanchenko, A.; Ivanchenko, V.; Mantero, A.; Nieminen, P.; Santin, G.; Tran, H. N.; Stepan, V.; Incerti, S.

    2014-01-01

    Roč. 274, OCT (2014), s. 841-882 ISSN 0021-9991 Institutional support: RVO:61389005 Keywords : chemical kinetics simulation * radiation chemistry * Fokker-Planck equation * Smoluchowski diffusion equation * Brownian bridge * dynamical time step s * k-d tree * radiolysis * radiobiology * Geant4-DNA * Brownian dynamics Subject RIV: BO - Biophysics Impact factor: 2.434, year: 2014

  11. A model of modulated diffusion. I. Analytical results

    International Nuclear Information System (INIS)

    Bazzani, A.; Turcchetti, G.; Vaienti, S.

    1994-01-01

    We introduce an integrable isochronous system and perturb its frequency by an external-deterministic or purely random-noise. Under the perturbation the action variable evolves in time: the corresponding diffusion coefficient is exactly computed and its dependence on the magnitude of the perturbation is carefully investigated. Different behaviors are found and justified: the quasilinear approximation, the superlinear regime, and the ballistic motion

  12. Comparison Of Diffuse Solar Radiation Models Using Data For ...

    African Journals Online (AJOL)

    Measurements of global solar radiation and sunshine duration data during the period from 1984 to 1999 were supplied by IITA (International Institute of Tropical Agriculture) at Onne. The data were used to establish empirical relationships that would connect the daily monthly average diffuse irradiation with both relative ...

  13. Diffusion as a Ruler: Modeling Kinesin Diffusion as a Length Sensor for Intraflagellar Transport.

    Science.gov (United States)

    Hendel, Nathan L; Thomson, Matthew; Marshall, Wallace F

    2018-02-06

    An important question in cell biology is whether cells are able to measure size, either whole cell size or organelle size. Perhaps cells have an internal chemical representation of size that can be used to precisely regulate growth, or perhaps size is just an accident that emerges due to constraint of nutrients. The eukaryotic flagellum is an ideal model for studying size sensing and control because its linear geometry makes it essentially one-dimensional, greatly simplifying mathematical modeling. The assembly of flagella is regulated by intraflagellar transport (IFT), in which kinesin motors carry cargo adaptors for flagellar proteins along the flagellum and then deposit them at the tip, lengthening the flagellum. The rate at which IFT motors are recruited to begin transport into the flagellum is anticorrelated with the flagellar length, implying some kind of communication between the base and the tip and possibly indicating that cells contain some mechanism for measuring flagellar length. Although it is possible to imagine many complex scenarios in which additional signaling molecules sense length and carry feedback signals to the cell body to control IFT, might the already-known components of the IFT system be sufficient to allow length dependence of IFT? Here we investigate a model in which the anterograde kinesin motors unbind after cargo delivery, diffuse back to the base, and are subsequently reused to power entry of new IFT trains into the flagellum. By mathematically modeling and simulating such a system, we are able to show that the diffusion time of the motors can in principle be sufficient to serve as a proxy for length measurement. We found that the diffusion model can not only achieve a stable steady-state length without the addition of any other signaling molecules or pathways, but also is able to produce the anticorrelation between length and IFT recruitment rate that has been observed in quantitative imaging studies. Copyright © 2017 Biophysical

  14. Cosmic ray propagation in a diffusion model: a new estimation of the diffusion parameters and of the secondary antiprotons flux

    International Nuclear Information System (INIS)

    Maurin, D.

    2001-02-01

    Dark matter is present at numerous scale of the universe (galaxy, cluster of galaxies, universe in the whole). This matter plays an important role in cosmology and can not be totally explained by conventional physic. From a particle physic point of view, there exists an extension of the standard model - supersymmetry - which predicts under certain conditions the existence of new stable and massive particles, the latter interacting weakly with ordinary matter. Apart from direct detection in accelerators, various indirect astrophysical detection are possible. This thesis focuses on one particular signature: disintegration of these particles could give antiprotons which should be measurable in cosmic rays. The present study evaluates the background corresponding to this signal i. e. antiprotons produced in the interactions between these cosmic rays and interstellar matter. In particular, uncertainties of this background being correlated to the uncertainties of the diffusion parameter, major part of this thesis is devoted to nuclei propagation. The first third of the thesis introduces propagation of cosmic rays in our galaxy, emphasizing the nuclear reaction responsibles of the nuclei fragmentation. In the second third, different models are reviewed, and in particular links between the leaky box model and the diffusion model are recalled (re-acceleration and convection are also discussed). This leads to a qualitative discussion about information that one can infer from propagation of these nuclei. In the last third, we finally present detailed solutions of the bidimensional diffusion model, along with constrains obtained on the propagation parameters. The latter is applied on the antiprotons background signal and it concludes the work done in this thesis. The propagation code for nuclei and antiprotons used here has proven its ability in data analysis. It would probably be of interest for the analysis of the cosmic ray data which will be taken by the AMS experiment on

  15. Modeling complex diffusion mechanisms in L1{sub 2}-structured compounds

    Energy Technology Data Exchange (ETDEWEB)

    Zacate, M. O., E-mail: zacatem1@nku.edu; Lape, M. [Northern Kentucky University, Department of Physics and Geology (United States); Stufflebeam, M.; Evenson, W. E. [Utah Valley University, College of Science and Health (United States)

    2010-04-15

    We report on a procedure developed to create stochastic models of hyperfine interactions for complex diffusion mechanisms and demonstrate its application to simulate perturbed angular correlation spectra for the divacancy and 6-jump cycle diffusion mechanisms in L1{sub 2}-structured compounds.

  16. Alignment dynamics of diffusive scalar gradient in a two-dimensional model flow

    Science.gov (United States)

    Gonzalez, M.

    2018-04-01

    The Lagrangian two-dimensional approach of scalar gradient kinematics is revisited accounting for molecular diffusion. Numerical simulations are performed in an analytic, parameterized model flow, which enables considering different regimes of scalar gradient dynamics. Attention is especially focused on the influence of molecular diffusion on Lagrangian statistical orientations and on the dynamics of scalar gradient alignment.

  17. Modelling of kinetics of diffusive phase transformation in binary systems with multiple stoichiometric phases

    Czech Academy of Sciences Publication Activity Database

    Svoboda, Jiří; Gamsjäger, E.; Fischer, F. D.; Kozeschnik, E.

    2006-01-01

    Roč. 27, č. 6 (2006), s. 622-628 ISSN 1547-7037 R&D Projects: GA AV ČR IAA200410601 Institutional research plan: CEZ:AV0Z20410507 Keywords : diffusion modelling * diffusivity coefficient * intrmetallic compound Subject RIV: JG - Metallurgy Impact factor: 0.427, year: 2006

  18. A vintage model of technology diffusion: The effects of returns to disversity and learning by using

    NARCIS (Netherlands)

    H.L.F. de Groot (Henri); M.W. Hofkes (Marjan); P. Mulder (Peter)

    2003-01-01

    textabstractThe diffusion of new technologies is a lengthy process and many firms continue to invest in relatively old technologies. This paper develops a vintage model of technology adoption and diffusion that aims at explaining these two phenomena. Our explanation for these phenomena emphasises

  19. Rotational diffusion model with a variable collision distribution. II. The effect of energy transfer

    NARCIS (Netherlands)

    Frenkel, D.; Wegdam, G.H.

    1974-01-01

    In this paper we present the results of model calculations on the rotational motion of linear molecules in dense systems. To this end we have developed a matrix description for the rotational diffusion, which is extended in this article to the J-diffusion limit. Closed expressions are obtained for

  20. A fractal derivative model for the characterization of anomalous diffusion in magnetic resonance imaging

    Science.gov (United States)

    Liang, Yingjie; Ye, Allen Q.; Chen, Wen; Gatto, Rodolfo G.; Colon-Perez, Luis; Mareci, Thomas H.; Magin, Richard L.

    2016-10-01

    Non-Gaussian (anomalous) diffusion is wide spread in biological tissues where its effects modulate chemical reactions and membrane transport. When viewed using magnetic resonance imaging (MRI), anomalous diffusion is characterized by a persistent or 'long tail' behavior in the decay of the diffusion signal. Recent MRI studies have used the fractional derivative to describe diffusion dynamics in normal and post-mortem tissue by connecting the order of the derivative with changes in tissue composition, structure and complexity. In this study we consider an alternative approach by introducing fractal time and space derivatives into Fick's second law of diffusion. This provides a more natural way to link sub-voxel tissue composition with the observed MRI diffusion signal decay following the application of a diffusion-sensitive pulse sequence. Unlike previous studies using fractional order derivatives, here the fractal derivative order is directly connected to the Hausdorff fractal dimension of the diffusion trajectory. The result is a simpler, computationally faster, and more direct way to incorporate tissue complexity and microstructure into the diffusional dynamics. Furthermore, the results are readily expressed in terms of spectral entropy, which provides a quantitative measure of the overall complexity of the heterogeneous and multi-scale structure of biological tissues. As an example, we apply this new model for the characterization of diffusion in fixed samples of the mouse brain. These results are compared with those obtained using the mono-exponential, the stretched exponential, the fractional derivative, and the diffusion kurtosis models. Overall, we find that the order of the fractal time derivative, the diffusion coefficient, and the spectral entropy are potential biomarkers to differentiate between the microstructure of white and gray matter. In addition, we note that the fractal derivative model has practical advantages over the existing models from the

  1. Diffusion within the Cytoplasm: A Mesoscale Model of Interacting Macromolecules

    Science.gov (United States)

    Trovato, Fabio; Tozzini, Valentina

    2014-01-01

    Recent experiments carried out in the dense cytoplasm of living cells have highlighted the importance of proteome composition and nonspecific intermolecular interactions in regulating macromolecule diffusion and organization. Despite this, the dependence of diffusion-interaction on physicochemical properties such as the degree of poly-dispersity and the balance between steric repulsion and nonspecific attraction among macromolecules was not systematically addressed. In this work, we study the problem of diffusion-interaction in the bacterial cytoplasm, combining theory and experimental data to build a minimal coarse-grained representation of the cytoplasm, which also includes, for the first time to our knowledge, the nucleoid. With stochastic molecular-dynamics simulations of a virtual cytoplasm we are able to track the single biomolecule motion, sizing from 3 to 80 nm, on submillisecond-long trajectories. We demonstrate that the size dependence of diffusion coefficients, anomalous exponents, and the effective viscosity experienced by biomolecules in the cytoplasm is fine-tuned by the intermolecular interactions. Accounting only for excluded volume in these potentials gives a weaker size-dependence than that expected from experimental data. On the contrary, adding nonspecific attraction in the range of 1–10 thermal energy units produces a stronger variation of the transport properties at growing biopolymer sizes. Normal and anomalous diffusive regimes emerge straightforwardly from the combination of high macromolecular concentration, poly-dispersity, stochasticity, and weak nonspecific interactions. As a result, small biopolymers experience a viscous cytoplasm, while the motion of big ones is jammed because the entanglements produced by the network of interactions and the entropic effects caused by poly-dispersity are stronger. PMID:25468337

  2. Diffusion Forecasting Model with Basis Functions from QR-Decomposition

    Science.gov (United States)

    Harlim, John; Yang, Haizhao

    2017-12-01

    The diffusion forecasting is a nonparametric approach that provably solves the Fokker-Planck PDE corresponding to Itô diffusion without knowing the underlying equation. The key idea of this method is to approximate the solution of the Fokker-Planck equation with a discrete representation of the shift (Koopman) operator on a set of basis functions generated via the diffusion maps algorithm. While the choice of these basis functions is provably optimal under appropriate conditions, computing these basis functions is quite expensive since it requires the eigendecomposition of an N× N diffusion matrix, where N denotes the data size and could be very large. For large-scale forecasting problems, only a few leading eigenvectors are computationally achievable. To overcome this computational bottleneck, a new set of basis functions constructed by orthonormalizing selected columns of the diffusion matrix and its leading eigenvectors is proposed. This computation can be carried out efficiently via the unpivoted Householder QR factorization. The efficiency and effectiveness of the proposed algorithm will be shown in both deterministically chaotic and stochastic dynamical systems; in the former case, the superiority of the proposed basis functions over purely eigenvectors is significant, while in the latter case forecasting accuracy is improved relative to using a purely small number of eigenvectors. Supporting arguments will be provided on three- and six-dimensional chaotic ODEs, a three-dimensional SDE that mimics turbulent systems, and also on the two spatial modes associated with the boreal winter Madden-Julian Oscillation obtained from applying the Nonlinear Laplacian Spectral Analysis on the measured Outgoing Longwave Radiation.

  3. Empirically Grounded Agent-Based Models of Innovation Diffusion: A Critical Review

    OpenAIRE

    Zhang, Haifeng; Vorobeychik, Yevgeniy

    2016-01-01

    Innovation diffusion has been studied extensively in a variety of disciplines, including sociology, economics, marketing, ecology, and computer science. Traditional literature on innovation diffusion has been dominated by models of aggregate behavior and trends. However, the agent-based modeling (ABM) paradigm is gaining popularity as it captures agent heterogeneity and enables fine-grained modeling of interactions mediated by social and geographic networks. While most ABM work on innovation ...

  4. Modeling and experiments for the time-dependent diffusion coefficient during methane desorption from coal

    Science.gov (United States)

    Cheng-Wu, Li; Hong-Lai, Xue; Cheng, Guan; Wen-biao, Liu

    2018-04-01

    Statistical analysis shows that in the coal matrix, the diffusion coefficient for methane is time-varying, and its integral satisfies the formula μt κ /(1 + β κ ). Therefore, a so-called dynamic diffusion coefficient model (DDC model) is developed. To verify the suitability and accuracy of the DDC model, a series of gas diffusion experiments were conducted using coal particles of different sizes. The results show that the experimental data can be accurately described by the DDC and bidisperse models, but the fit to the DDC model is slightly better. For all coal samples, as time increases, the effective diffusion coefficient first shows a sudden drop, followed by a gradual decrease before stabilizing at longer times. The effective diffusion coefficient has a negative relationship with the size of the coal particle. Finally, the relationship between the constants of the DDC model and the effective diffusion coefficient is discussed. The constant α (μ/R 2 ) denotes the effective coefficient at the initial time, and the constants κ and β control the attenuation characteristic of the effective diffusion coefficient.

  5. Predicting the weathering of fuel and oil spills: A diffusion-limited evaporation model.

    Science.gov (United States)

    Kotzakoulakis, Konstantinos; George, Simon C

    2018-01-01

    The majority of the evaporation models currently available in the literature for the prediction of oil spill weathering do not take into account diffusion-limited mass transport and the formation of a concentration gradient in the oil phase. The altered surface concentration of the spill caused by diffusion-limited transport leads to a slower evaporation rate compared to the predictions of diffusion-agnostic evaporation models. The model presented in this study incorporates a diffusive layer in the oil phase and predicts the diffusion-limited evaporation rate. The information required is the composition of the fluid from gas chromatography or alternatively the distillation data. If the density or a single viscosity measurement is available the accuracy of the predictions is higher. Environmental conditions such as water temperature, air pressure and wind velocity are taken into account. The model was tested with synthetic mixtures, petroleum fuels and crude oils with initial viscosities ranging from 2 to 13,000 cSt. The tested temperatures varied from 0 °C to 23.4 °C and wind velocities from 0.3 to 3.8 m/s. The average absolute deviation (AAD) of the diffusion-limited model ranged between 1.62% and 24.87%. In comparison, the AAD of a diffusion-agnostic model ranged between 2.34% and 136.62% against the same tested fluids. Copyright © 2017 Elsevier Ltd. All rights reserved.

  6. Atomistic models of Cu diffusion in CuInSe2 under variations in composition

    Science.gov (United States)

    Sommer, David E.; Dunham, Scott T.

    2018-03-01

    We construct an analytic model for the composition dependence of the vacancy-mediated Cu diffusion coefficient in undoped CuInSe2 using parameters from density functional theory. The applicability of this model is supported numerically with kinetic lattice Monte Carlo and Onsager transport tensors. We discuss how this model relates to experimental measurements of Cu diffusion, arguing that our results can account for significant contributions to the bulk diffusion of Cu tracers in non-stoichiometric CuInSe2.

  7. Pattern Formation in Predator-Prey Model with Delay and Cross Diffusion

    Directory of Open Access Journals (Sweden)

    Xinze Lian

    2013-01-01

    Full Text Available We consider the effect of time delay and cross diffusion on the dynamics of a modified Leslie-Gower predator-prey model incorporating a prey refuge. Based on the stability analysis, we demonstrate that delayed feedback may generate Hopf and Turing instability under some conditions, resulting in spatial patterns. One of the most interesting findings is that the model exhibits complex pattern replication: the model dynamics exhibits a delay and diffusion controlled formation growth not only to spots, stripes, and holes, but also to spiral pattern self-replication. The results indicate that time delay and cross diffusion play important roles in pattern formation.

  8. 3D radiation belt diffusion model results using new empirical models of whistler chorus and hiss

    Science.gov (United States)

    Cunningham, G.; Chen, Y.; Henderson, M. G.; Reeves, G. D.; Tu, W.

    2012-12-01

    3D diffusion codes model the energization, radial transport, and pitch angle scattering due to wave-particle interactions. Diffusion codes are powerful but are limited by the lack of knowledge of the spatial & temporal distribution of waves that drive the interactions for a specific event. We present results from the 3D DREAM model using diffusion coefficients driven by new, activity-dependent, statistical models of chorus and hiss waves. Most 3D codes parameterize the diffusion coefficients or wave amplitudes as functions of magnetic activity indices like Kp, AE, or Dst. These functional representations produce the average value of the wave intensities for a given level of magnetic activity; however, the variability of the wave population at a given activity level is lost with such a representation. Our 3D code makes use of the full sample distributions contained in a set of empirical wave databases (one database for each wave type, including plasmaspheric hiss, lower and upper hand chorus) that were recently produced by our team using CRRES and THEMIS observations. The wave databases store the full probability distribution of observed wave intensity binned by AE, MLT, MLAT and L*. In this presentation, we show results that make use of the wave intensity sample probability distributions for lower-band and upper-band chorus by sampling the distributions stochastically during a representative CRRES-era storm. The sampling of the wave intensity probability distributions produces a collection of possible evolutions of the phase space density, which quantifies the uncertainty in the model predictions caused by the uncertainty of the chorus wave amplitudes for a specific event. A significant issue is the determination of an appropriate model for the spatio-temporal correlations of the wave intensities, since the diffusion coefficients are computed as spatio-temporal averages of the waves over MLT, MLAT and L*. The spatiotemporal correlations cannot be inferred from the

  9. Applying horizontal diffusion on pressure surface to mesoscale models on terrain-following coordinates

    Science.gov (United States)

    Hann-Ming Henry Juang; Ching-Teng Lee; Yongxin Zhang; Yucheng Song; Ming-Chin Wu; Yi-Leng Chen; Kevin Kodama; Shyh-Chin Chen

    2005-01-01

    The National Centers for Environmental Prediction regional spectral model and mesoscale spectral model (NCEP RSM/MSM) use a spectral computation on perturbation. The perturbation is defined as a deviation between RSM/MSM forecast value and their outer model or analysis value on model sigma-coordinate surfaces. The horizontal diffusion used in the models applies...

  10. The water-induced linear reduction gas diffusivity model extended to three pore regions

    DEFF Research Database (Denmark)

    Chamindu, Deepagoda; De Jonge, Lis Wollesen; Kawamoto, Ken

    2015-01-01

    An existing gas diffusivity model developed originally for sieved, repacked soils was extended to characterize gas diffusion in differently structured soils and functional pore networks. A gas diffusivity-derived pore connectivity index was used as a measure of soil structure development. Charact......An existing gas diffusivity model developed originally for sieved, repacked soils was extended to characterize gas diffusion in differently structured soils and functional pore networks. A gas diffusivity-derived pore connectivity index was used as a measure of soil structure development....... Characterization of soil functional pore structure is an essential prerequisite to understand key gas transport processes in variably saturated soils in relation to soil ecosystems, climate, and environmental services. In this study, the water-induced linear reduction (WLR) soil gas diffusivity model originally...... gas diffusivity from moist to dry conditions across differently structured porous media, including narrow soil size fractions, perforated plastic blocks, fractured limestone, peaty soils, aggregated volcanic ash soils, and particulate substrates for Earth- or space-based applications. The new Cip...

  11. Gaussian and Affine Approximation of Stochastic Diffusion Models for Interest and Mortality Rates

    Directory of Open Access Journals (Sweden)

    Marcus C. Christiansen

    2013-10-01

    Full Text Available In the actuarial literature, it has become common practice to model future capital returns and mortality rates stochastically in order to capture market risk and forecasting risk. Although interest rates often should and mortality rates always have to be non-negative, many authors use stochastic diffusion models with an affine drift term and additive noise. As a result, the diffusion process is Gaussian and, thus, analytically tractable, but negative values occur with positive probability. The argument is that the class of Gaussian diffusions would be a good approximation of the real future development. We challenge that reasoning and study the asymptotics of diffusion processes with affine drift and a general noise term with corresponding diffusion processes with an affine drift term and an affine noise term or additive noise. Our study helps to quantify the error that is made by approximating diffusive interest and mortality rate models with Gaussian diffusions and affine diffusions. In particular, we discuss forward interest and forward mortality rates and the error that approximations cause on the valuation of life insurance claims.

  12. Modeling and Analysis of Epidemic Diffusion within Small-World Network

    Directory of Open Access Journals (Sweden)

    Ming Liu

    2012-01-01

    Full Text Available To depict the rule of epidemic diffusion, two different models, the Susceptible-Exposure-Infected-Recovered-Susceptible (SEIRS model and the Susceptible-Exposure-Infected-Quarantine-Recovered-Susceptible (SEIQRS model, are proposed and analyzed within small-world network in this paper. Firstly, the epidemic diffusion models are constructed with mean-filed theory, and condition for the occurrence of disease diffusion is explored. Then, the existence and global stability of the disease-free equilibrium and the endemic equilibrium for these two complex epidemic systems are proved by differential equations knowledge and Routh-Hurwiz theory. At last, a numerical example which includes key parameters analysis and critical topic discussion is presented to test how well the proposed two models may be applied in practice. These works may provide some guidelines for decision makers when coping with epidemic diffusion controlling problems.

  13. Numerical study of a cylinder model of the diffusion MRI signal for neuronal dendrite trees

    Science.gov (United States)

    Van Nguyen, Dang; Grebenkov, Denis; Le Bihan, Denis; Li, Jing-Rebecca

    2015-03-01

    We study numerically how the neuronal dendrite tree structure can affect the diffusion magnetic resonance imaging (dMRI) signal in brain tissue. For a large set of randomly generated dendrite trees, synthetic dMRI signals are computed and fitted to a cylinder model to estimate the effective longitudinal diffusivity DL in the direction of neurites. When the dendrite branches are short compared to the diffusion length, DL depends significantly on the ratio between the average branch length and the diffusion length. In turn, DL has very weak dependence on the distribution of branch lengths and orientations of a dendrite tree, and the number of branches per node. We conclude that the cylinder model which ignores the connectivity of the dendrite tree, can still be adapted to describe the apparent diffusion coefficient in brain tissue.

  14. A Nonlinear Diffusion Equation-Based Model for Ultrasound Speckle Noise Removal

    Science.gov (United States)

    Zhou, Zhenyu; Guo, Zhichang; Zhang, Dazhi; Wu, Boying

    2018-04-01

    Ultrasound images are contaminated by speckle noise, which brings difficulties in further image analysis and clinical diagnosis. In this paper, we address this problem in the view of nonlinear diffusion equation theories. We develop a nonlinear diffusion equation-based model by taking into account not only the gradient information of the image, but also the information of the gray levels of the image. By utilizing the region indicator as the variable exponent, we can adaptively control the diffusion type which alternates between the Perona-Malik diffusion and the Charbonnier diffusion according to the image gray levels. Furthermore, we analyze the proposed model with respect to the theoretical and numerical properties. Experiments show that the proposed method achieves much better speckle suppression and edge preservation when compared with the traditional despeckling methods, especially in the low gray level and low-contrast regions.

  15. Modelling Ti in-diffusion in LiNbO sub 3

    CERN Document Server

    Silva-Filho, H F D; Dias-Nunes, F

    1997-01-01

    This work presents theoretical results on the modelling of Ti in-diffusion in LiNbO sub 3 assuming the Ti activation energy to be spatially dependent along the diffusion depth direction as consequence of the Li concentration depletion due to its out-diffusion. The model also considers that Ti diffusion occurs as an ion exchange process in which Ti sup 4 sup + ions substitute Nb sup 5 sup + ions located in Li sites. The resulting diffusion equation is numerically solved according to initial and boundary conditions chosen to describe as close as possible the experimental scenario. The results show that this approach leads to highly asymmetrical Ti concentration profiles within the LiNbO sub 3 crystal, as already determined experimentally. (author)

  16. Thermomechanics of damageable materials under diffusion: modelling and analysis

    Czech Academy of Sciences Publication Activity Database

    Roubíček, Tomáš; Tomassetti, G.

    2015-01-01

    Roč. 66, č. 6 (2015), s. 3535-3572 ISSN 0044-2275 R&D Projects: GA ČR GAP201/10/0357 Institutional support: RVO:61388998 Keywords : visco-elastic porous solids * incomplete damage * diffusion driven by chemical-potential gradient Subject RIV: BA - General Mathematics Impact factor: 1.560, year: 2015 http://link.springer.com/article/10.1007/s00033-015-0566-2

  17. Covariance Localization with the Diffusion-Based Correlation Models

    Science.gov (United States)

    2013-02-01

    wavelet approach to account for inhomogeneities in the covariance structure; Wu et al. (2002) and Purser et al. (2003) employed re- cursive filters to...fusion operator approach; and Pannekoucke (2009) ex- plored a hybrid scheme, featuring wavelet technique in combination with the diffusion method...by the renormalization formula B = VCV, where V = diag(v), and v € RN is the vector of rms error var - iances (square roots of the diagonal of B

  18. Semi-Nonparametric Estimation and Misspecification Testing of Diffusion Models

    DEFF Research Database (Denmark)

    Kristensen, Dennis

    of the estimators and tests under the null are derived, and the power properties are analyzed by considering contiguous alternatives. Test directly comparing the drift and diffusion estimators under the relevant null and alternative are also analyzed. Markov Bootstrap versions of the test statistics are proposed...... to improve on the finite-sample approximations. The finite sample properties of the estimators are examined in a simulation study....

  19. Development of an analytical diffusion model for modeling hydrogen isotope exchange

    Science.gov (United States)

    Barton, J. L.; Wang, Y. Q.; Doerner, R. P.; Tynan, G. R.

    2015-08-01

    We create a model for H retention depth profiles in W and subsequently model how this profile changes after isotope exchange. This is accomplished by calculating how trapping defects in W accumulate D (or H) inventory as W is being exposed to plasma. Each trapping site is characterized by a trapping rate and a release rate, where the only free parameters are the distribution of these trapping sites in the material. The filled trap concentrations for each trap type are modeled as a diffusion process because post-mortem deuterium depth profiles indicate that traps are filled well beyond the ion implantation zone (2-5 nm). Using this retention model, an isotope exchange rate is formulated. The retention model and isotope exchange rate are compared to low temperature isotope exchange experiments in tungsten with good agreement. The limitations of the current model highlight important physics and motivate future work.

  20. A model for diffuse and global irradiation on horizontal surface

    International Nuclear Information System (INIS)

    Jain, P.C.

    1984-01-01

    The intensity of the direct radiation and the diffuse radiation at any time on a horizontal surface are each expressed as fractions of the intensity of the extraterrestrial radiation. Using these and assuming a random distribution of the bright sunshine hours and not too wide variations in the values of the transmission coefficients, a number of relations for estimating the global and the diffuse irradiation are derived. Two of the relations derived are already known empirically. The formulation lends more confidence in the use of the already empirically known relations providing them a theoretical basis, and affords more flexibility to the estimation techniques by supplying new equations. The study identifies three independent basic parameters and the constants appearing in the various equations as simple functions of these three basic parameters. Experimental data for the diffuse irradiation, the global irradiation and the bright sunshine duration for Macerata (Italy), Salisbury and Bulawayo (Zimbabwe) is found to show good correlation for the linear equations, and the nature and the interrelationships of the constants are found to be as predicted by the theory

  1. Multimodel analysis of anisotropic diffusive tracer-gas transport in a deep arid unsaturated zone

    Science.gov (United States)

    Green, Christopher T.; Walvoord, Michelle Ann; Andraski, Brian J.; Striegl, Robert G.; Stonestrom, David A.

    2015-01-01

    Gas transport in the unsaturated zone affects contaminant flux and remediation, interpretation of groundwater travel times from atmospheric tracers, and mass budgets of environmentally important gases. Although unsaturated zone transport of gases is commonly treated as dominated by diffusion, the characteristics of transport in deep layered sediments remain uncertain. In this study, we use a multimodel approach to analyze results of a gas-tracer (SF6) test to clarify characteristics of gas transport in deep unsaturated alluvium. Thirty-five separate models with distinct diffusivity structures were calibrated to the tracer-test data and were compared on the basis of Akaike Information Criteria estimates of posterior model probability. Models included analytical and numerical solutions. Analytical models provided estimates of bulk-scale apparent diffusivities at the scale of tens of meters. Numerical models provided information on local-scale diffusivities and feasible lithological features producing the observed tracer breakthrough curves. The combined approaches indicate significant anisotropy of bulk-scale diffusivity, likely associated with high-diffusivity layers. Both approaches indicated that diffusivities in some intervals were greater than expected from standard models relating porosity to diffusivity. High apparent diffusivities and anisotropic diffusivity structures were consistent with previous observations at the study site of rapid lateral transport and limited vertical spreading of gas-phase contaminants. Additional processes such as advective oscillations may be involved. These results indicate that gases in deep, layered unsaturated zone sediments can spread laterally more quickly, and produce higher peak concentrations, than predicted by homogeneous, isotropic diffusion models.

  2. Time-Dependent Diffusion MRI in Cancer: Tissue Modeling and Applications

    Directory of Open Access Journals (Sweden)

    Olivier Reynaud

    2017-11-01

    Full Text Available In diffusion weighted imaging (DWI, the apparent diffusion coefficient (ADC has been recognized as a useful and sensitive surrogate for cell density, paving the way for non-invasive tumor staging, and characterization of treatment efficacy in cancer. However, microstructural parameters, such as cell size, density and/or compartmental diffusivities affect diffusion in various fashions, making of conventional DWI a sensitive but non-specific probe into changes happening at cellular level. Alternatively, tissue complexity can be probed and quantified using the time dependence of diffusion metrics, sometimes also referred to as temporal diffusion spectroscopy when only using oscillating diffusion gradients. Time-dependent diffusion (TDD is emerging as a strong candidate for specific and non-invasive tumor characterization. Despite the lack of a general analytical solution for all diffusion times/frequencies, TDD can be probed in various regimes where systems simplify in order to extract relevant information about tissue microstructure. The fundamentals of TDD are first reviewed (a in the short time regime, disentangling structural and diffusive tissue properties, and (b near the tortuosity limit, assuming weakly heterogeneous media near infinitely long diffusion times. Focusing on cell bodies (as opposed to neuronal tracts, a simple but realistic model for intracellular diffusion can offer precious insight on diffusion inside biological systems, at all times. Based on this approach, the main three geometrical models implemented so far (IMPULSED, POMACE, VERDICT are reviewed. Their suitability to quantify cell size, intra- and extracellular spaces (ICS and ECS and diffusivities are assessed. The proper modeling of tissue membrane permeability—hardly a newcomer in the field, but lacking applications—and its impact on microstructural estimates are also considered. After discussing general issues with tissue modeling and microstructural parameter

  3. Specifying theories of developmental dyslexia: a diffusion model analysis of word recognition

    NARCIS (Netherlands)

    Zeguers, M.H.T.; Snellings, P.; Tijms, J.; Weeda, W.D.; Tamboer, P.; Bexkens, A.; Huizenga, H.M.

    2011-01-01

    The nature of word recognition difficulties in developmental dyslexia is still a topic of controversy. We investigated the contribution of phonological processing deficits and uncertainty to the word recognition difficulties of dyslexic children by mathematical diffusion modeling of visual and

  4. Epidemic model for information diffusion in web forums: experiments in marketing exchange and political dialog.

    Science.gov (United States)

    Woo, Jiyoung; Chen, Hsinchun

    2016-01-01

    As social media has become more prevalent, its influence on business, politics, and society has become significant. Due to easy access and interaction between large numbers of users, information diffuses in an epidemic style on the web. Understanding the mechanisms of information diffusion through these new publication methods is important for political and marketing purposes. Among social media, web forums, where people in online communities disseminate and receive information, provide a good environment for examining information diffusion. In this paper, we model topic diffusion in web forums using the epidemiology model, the susceptible-infected-recovered (SIR) model, frequently used in previous research to analyze both disease outbreaks and knowledge diffusion. The model was evaluated on a large longitudinal dataset from the web forum of a major retail company and from a general political discussion forum. The fitting results showed that the SIR model is a plausible model to describe the diffusion process of a topic. This research shows that epidemic models can expand their application areas to topic discussion on the web, particularly social media such as web forums.

  5. Langevin dynamics modeling of the water diffusion tensor in partially aligned collagen networks

    Science.gov (United States)

    Powell, Sean K.; Momot, Konstantin I.

    2012-09-01

    In this work, a Langevin dynamics model of the diffusion of water in articular cartilage was developed. Numerical simulations of the translational dynamics of water molecules and their interaction with collagen fibers were used to study the quantitative relationship between the organization of the collagen fiber network and the diffusion tensor of water in model cartilage. Langevin dynamics was used to simulate water diffusion in both ordered and partially disordered cartilage models. In addition, an analytical approach was developed to estimate the diffusion tensor for a network comprising a given distribution of fiber orientations. The key findings are that (1) an approximately linear relationship was observed between collagen volume fraction and the fractional anisotropy of the diffusion tensor in fiber networks of a given degree of alignment, (2) for any given fiber volume fraction, fractional anisotropy follows a fiber alignment dependency similar to the square of the second Legendre polynomial of cos(θ), with the minimum anisotropy occurring at approximately the magic angle (θMA), and (3) a decrease in the principal eigenvalue and an increase in the transverse eigenvalues is observed as the fiber orientation angle θ progresses from 0∘ to 90∘. The corresponding diffusion ellipsoids are prolate for θθMA. Expansion of the model to include discrimination between the combined effects of alignment disorder and collagen fiber volume fraction on the diffusion tensor is discussed.

  6. Diffusion of PAH in potato and carrot slices and application for a potato model.

    Science.gov (United States)

    Trapp, Stefan; Cammarano, Anita; Capri, Ettore; Reichenberg, Fredrik; Mayer, Philipp

    2007-05-01

    A method for quantifying the effect of medium composition on the diffusive mass transfer of hydrophobic organic chemicals through thin layers was applied to plant tissue. The method employs two silicone disks, one serving as source and one as sink for a series of PAHs diffusing through thin layers of water, potato tissue, and carrot tissue. Naphthalene, phenanthrene, anthracene, and fluoranthene served as model substances. Their transfer from source to sink disk was measured by HPLC to determine a velocity rate constant proportional to the diffusive conductivity. The diffusive flux through the plant tissue was modeled using Fick's first law of diffusion. Both the experimental results and the model suggest that mass transfer through plant tissue occurs predominantly through pore water and that, therefore, the mass transfer ratio between plant tissue and water is independent of the hydrophobicity of the chemical. The findings of this study provide a convenient method to estimate the diffusion of nonvolatile organic chemicals through various plant materials. The application to a radial diffusion model suggests that "growth dilution" rendersthe concentration of highly hydrophobic chemicals in potatoes below their equilibrium partitioning level. This is in agreement with field results for the bioconcentration of PAHs in potatoes.

  7. Homotopy perturbation transform method for pricing under pure diffusion models with affine coefficients

    Directory of Open Access Journals (Sweden)

    Claude Rodrigue Bambe Moutsinga

    2018-01-01

    Full Text Available Most existing multivariate models in finance are based on diffusion models. These models typically lead to the need of solving systems of Riccati differential equations. In this paper, we introduce an efficient method for solving systems of stiff Riccati differential equations. In this technique, a combination of Laplace transform and homotopy perturbation methods is considered as an algorithm to the exact solution of the nonlinear Riccati equations. The resulting technique is applied to solving stiff diffusion model problems that include interest rates models as well as two and three-factor stochastic volatility models. We show that the present approach is relatively easy, efficient and highly accurate.

  8. An extended five-stream model for diffusion of ion-implanted dopants in monocrystalline silicon

    International Nuclear Information System (INIS)

    Khina, B.B.

    2007-01-01

    Low-energy high-dose ion implantation of different dopants (P, Sb, As, B and others) into monocrystalline silicon with subsequent thermal annealing is used for the formation of ultra-shallow p-n junctions in modern VLSI circuit technology. During annealing, dopant activation and diffusion in silicon takes place. The experimentally observed phenomenon of transient enhanced diffusion (TED), which is typically ascribed to the interaction of diffusing species with non-equilibrium point defects accumulated in silicon due to ion damage, and formation of small clusters and extended defects, hinders further down scaling of p-n junctions in VLSI circuits. TED is currently a subject of extensive experimental and theoretical investigation in many binary and multicomponent systems. However, the state-of-the-art mathematical models of dopant diffusion, which are based on the so-called 'five-stream' approach, and modern TCAD software packages such as SUPREM-4 (by Silvaco Data Systems, Ltd.) that implement these models encounter severe difficulties in describing TED. Solving the intricate problem of TED suppression and development of novel regimes of ion implantation and rapid thermal annealing is impossible without elaboration of new mathematical models and computer simulation of this complex phenomenon. In this work, an extended five-stream model for diffusion in silicon is developed which takes into account all possible charge states of point defects (vacancies and silicon self-interstitials) and diffusing pairs 'dopant atom-vacancy' and 'dopant atom-silicon self-interstitial'. The model includes the drift terms for differently charged point defects and pairs in the internal electric field and the kinetics of interaction between unlike 'species' (generation and annihilation of pairs and annihilation of point defects). Expressions for diffusion coefficients and numerous sink/source terms that appear in the non-linear, non-steady-state reaction-diffusion equations are derived

  9. Diffuse interface model of surfactant adsorption onto flat and droplet interfaces

    NARCIS (Netherlands)

    Sman, van der R.G.M.; Graaf, van der S.

    2006-01-01

    For applications where droplet breakup and surfactant adsorption are strongly coupled, a diffuse interface model is developed. The model is based on a free energy functional, partly adapted from the sharp interface model of [Diamant and Andelman 34(8):575-580, (1996)]. The model is implemented as a

  10. Macromolecular diffusion in crowded media beyond the hard-sphere model.

    Science.gov (United States)

    Blanco, Pablo M; Garcés, Josep Lluís; Madurga, Sergio; Mas, Francesc

    2018-04-25

    The effect of macromolecular crowding on diffusion beyond the hard-core sphere model is studied. A new coarse-grained model is presented, the Chain Entanglement Softened Potential (CESP) model, which takes into account the macromolecular flexibility and chain entanglement. The CESP model uses a shoulder-shaped interaction potential that is implemented in the Brownian Dynamics (BD) computations. The interaction potential contains only one parameter associated with the chain entanglement energetic cost (Ur). The hydrodynamic interactions are included in the BD computations via Tokuyama mean-field equations. The model is used to analyze the diffusion of a streptavidin protein among different sized dextran obstacles. For this system, Ur is obtained by fitting the streptavidin experimental long-time diffusion coefficient Dlongversus the macromolecular concentration for D50 (indicating their molecular weight in kg mol-1) dextran obstacles. The obtained Dlong values show better quantitative agreement with experiments than those obtained with hard-core spheres. Moreover, once parametrized, the CESP model is also able to quantitatively predict Dlong and the anomalous exponent (α) for streptavidin diffusion among D10, D400 and D700 dextran obstacles. Dlong, the short-time diffusion coefficient (Dshort) and α are obtained from the BD simulations by using a new empirical expression, able to describe the full temporal evolution of the diffusion coefficient.

  11. Modification of TOUGH2 to Include the Dusty Gas Model for Gas Diffusion; TOPICAL

    International Nuclear Information System (INIS)

    WEBB, STEPHEN W.

    2001-01-01

    The GEO-SEQ Project is investigating methods for geological sequestration of CO(sub 2). This project, which is directed by LBNL and includes a number of other industrial, university, and national laboratory partners, is evaluating computer simulation methods including TOUGH2 for this problem. The TOUGH2 code, which is a widely used code for flow and transport in porous and fractured media, includes simplified methods for gas diffusion based on a direct application of Fick's law. As shown by Webb (1998) and others, the Dusty Gas Model (DGM) is better than Fick's Law for modeling gas-phase diffusion in porous media. In order to improve gas-phase diffusion modeling for the GEO-SEQ Project, the EOS7R module in the TOUGH2 code has been modified to include the Dusty Gas Model as documented in this report. In addition, the liquid diffusion model has been changed from a mass-based formulation to a mole-based model. Modifications for separate and coupled diffusion in the gas and liquid phases have also been completed. The results from the DGM are compared to the Fick's law behavior for TCE and PCE diffusion across a capillary fringe. The differences are small due to the relatively high permeability (k= 10(sup -11) m(sup 2)) of the problem and the small mole fraction of the gases. Additional comparisons for lower permeabilities and higher mole fractions may be useful

  12. Proton deflectometry characterization of Biermann-Battery field advection

    Science.gov (United States)

    Pollock, Bradley; Moore, Alastair; Meezan, Nathan; Eder, Dave; Kane, Jave; Strozzi, David; Wilks, Scott; Rinderknecht, Hans; Zylstra, Alex; Fujioka, Shinsuke; Kemp, Gregory; Moody, John

    2017-10-01

    Laser-foil interactions are well known to produce azimuthal magnetic fields around the laser spot due to the orthogonal density and temperature gradients that develop near the foil surface (the Biermann-Battery effect). Simulations show that these fields produced inside hohlraums used for indirect drive experiments at the National Ignition Facility (NIF); however, modeling these fields and their advection is very computationally expensive on the temporal and spatial scales relevant for typical NIF hohlraum experiments ( 10 ns, few mm). The hohlraum geometry also makes directly probing the fields somewhat challenging, limiting the available experimental data on these fields under NIF conditions. In particular, the relative contributions of frozen-in and Nernst advection of the field away from the hohlraum wall is not currently well understood. We have developed a new target platform for direct measurements of the field topology in a NIF-relevant configuration. Using a single cone of NIF, a 2.5 mm long, 5.4 mm diameter Au ring is illuminated with a similar beam geometry to that of one ring of beams in a full-scale hohlraum experiment. The ring target has no end caps, providing a clear line of sight for probing through the ring. A D3He filled exploding pusher placed 5 cm below the ring is illuminated by an additional 60 beams of NIF to produce protons, some of which propagate through the ring. Work was performed under the auspices of the U.S. Department of Energy by LLNL under Contract DE-AC52-07NA27344 and under LDRD support from LLNL.

  13. Simulating cyclic voltammetry under advection for electrochemical cantilevers

    DEFF Research Database (Denmark)

    Adesokan, Bolaji James; Evgrafov, Anton; Sørensen, Mads Peter

    2015-01-01

    We present a mathematical model describing an electrochemical system involving electrode–electrolyte interaction. The model is governed by a system of advection–diffusion equations with a nonlinear reaction term at the boundary. Our calculations based on such model demonstrate the dynamics of ion...

  14. [Estimation of the indoor diffusion of asbestos fibers with the diffusion model for the external environment of Pasquill and Gifford].

    Science.gov (United States)

    Bellassai, Debora; Spinazzola, Antonio; Silvestri, Stefano

    2015-01-01

    In absence of results of environmental monitoring to proceed with the assessment of occupational exposure, it was developed a model that retraces the one of Pasquill and Gifford, currently used for the estimation of concentrations of pollutants at certain distances from the source in outdoor environment. Purpose of the study is the quantitative estimate of the diffusion of airborne asbestos fibers in function of the distance from the source in an factory where railway carriages were produced during the period when asbestos was sprayed as insulator of the body. The treatment was carried out in a large shed without separation from other operations. The application of the model, given the characteristics of the emitting source, has allowed us to estimate the diffusion of particles inside the shed with an expected decrease in concentration inversely proportional to the distance from the source. By appropriate calculations the concentration by weight has been converted into number offibers by volume, the unit of measure currently used for the definition of asbestos pollution.

  15. Measurement and modeling of CO2 diffusion coefficient in Saline Aquifer at reservoir conditions

    Science.gov (United States)

    Azin, Reza; Mahmoudy, Mohamad; Raad, Seyed; Osfouri, Shahriar

    2013-12-01

    Storage of CO2 in deep saline aquifers is a promising techniques to mitigate global warming and reduce greenhouse gases (GHG). Correct measurement of diffusivity is essential for predicting rate of transfer and cumulative amount of trapped gas. Little information is available on diffusion of GHG in saline aquifers. In this study, diffusivity of CO2 into a saline aquifer taken from oil field was measured and modeled. Equilibrium concentration of CO2 at gas-liquid interface was determined using Henry's law. Experimental measurements were reported at temperature and pressure ranges of 32-50°C and 5900-6900 kPa, respectively. Results show that diffusivity of CO2 varies between 3.52-5.98×10-9 m2/s for 5900 kPa and 5.33-6.16×10-9 m2/s for 6900 kPa initial pressure. Also, it was found that both pressure and temperature have a positive impact on the measures of diffusion coefficient. Liquid swelling due to gas dissolution and variations in gas compressibility factor as a result of pressure decay was found negligible. Measured diffusivities were used model the physical model and develop concentration profile of dissolved gas in the liquid phase. Results of this study provide unique measures of CO2 diffusion coefficient in saline aquifer at high pressure and temperature conditions, which can be applied in full-field studies of carbon capture and sequestration projects.

  16. Matrix Diffusion for Performance Assessment - Experimental Evidence, Modelling Assumptions and Open Issues

    International Nuclear Information System (INIS)

    Jakob, A.

    2004-07-01

    In this report a comprehensive overview on the matrix diffusion of solutes in fractured crystalline rocks is presented. Some examples from observations in crystalline bedrock are used to illustrate that matrix diffusion indeed acts on various length scales. Fickian diffusion is discussed in detail followed by some considerations on rock porosity. Due to the fact that the dual-porosity medium model is a very common and versatile method for describing solute transport in fractured porous media, the transport equations and the fundamental assumptions, approximations and simplifications are discussed in detail. There is a variety of geometrical aspects, processes and events which could influence matrix diffusion. The most important of these, such as, e.g., the effect of the flow-wetted fracture surface, channelling and the limited extent of the porous rock for matrix diffusion etc., are addressed. In a further section open issues and unresolved problems related to matrix diffusion are mentioned. Since matrix diffusion is one of the key retarding processes in geosphere transport of dissolved radionuclide species, matrix diffusion was consequently taken into account in past performance assessments of radioactive waste repositories in crystalline host rocks. Some issues regarding matrix diffusion are site-specific while others are independent of the specific situation of a planned repository for radioactive wastes. Eight different performance assessments from Finland, Sweden and Switzerland were considered with the aim of finding out how matrix diffusion was addressed, and whether a consistent picture emerges regarding the varying methodology of the different radioactive waste organisations. In the final section of the report some conclusions are drawn and an outlook is given. An extensive bibliography provides the reader with the key papers and reports related to matrix diffusion. (author)

  17. Modelling large-particle diffusion in porous media as anisotropic continuous-time random walk

    Science.gov (United States)

    Amitai, Shahar; Blumenfeld, Raphael

    We test the fidelity of modelling diffusion of finite-size particles in porous media by continuous-time random walk (CTRW), where the step-size and waiting-time distributions of the former, Pl and Pt, are used as input to the latter. As the particle size is increased, the diffusion undergoes a transition from normal to anomalous. We find that, based only on Pl and Pt, CTRW does not predict correctly this transition. We show that the discrepancy is due to the change in effective connectivity (topology) of the porous media with increasing particle size. We propose a method to capture this within the CTRW model by adding anisotropy. This adjustment yields good agreement with the simulated diffusion process, making it possible to use CTRW, with all its advantages, to model diffusion of any finite size particle in confined geometries.

  18. Drift diffusion model of reward and punishment learning in schizophrenia: Modeling and experimental data.

    Science.gov (United States)

    Moustafa, Ahmed A; Kéri, Szabolcs; Somlai, Zsuzsanna; Balsdon, Tarryn; Frydecka, Dorota; Misiak, Blazej; White, Corey

    2015-09-15

    In this study, we tested reward- and punishment learning performance using a probabilistic classification learning task in patients with schizophrenia (n=37) and healthy controls (n=48). We also fit subjects' data using a Drift Diffusion Model (DDM) of simple decisions to investigate which components of the decision process differ between patients and controls. Modeling results show between-group differences in multiple components of the decision process. Specifically, patients had slower motor/encoding time, higher response caution (favoring accuracy over speed), and a deficit in classification learning for punishment, but not reward, trials. The results suggest that patients with schizophrenia adopt a compensatory strategy of favoring accuracy over speed to improve performance, yet still show signs of a deficit in learning based on negative feedback. Our data highlights the importance of applying fitting models (particularly drift diffusion models) to behavioral data. The implications of these findings are discussed relative to theories of schizophrenia and cognitive processing. Copyright © 2015 Elsevier B.V. All rights reserved.

  19. Preliminary Hybrid Modeling of the Panama Canal: Operations and Salinity Diffusion

    Directory of Open Access Journals (Sweden)

    Luis Rabelo

    2012-01-01

    Full Text Available This paper deals with the initial modeling of water salinity and its diffusion into the lakes during lock operation on the Panama Canal. A hybrid operational model was implemented using the AnyLogic software simulation environment. This was accomplished by generating an operational discrete-event simulation model and a continuous simulation model based on differential equations, which modeled the salinity diffusion in the lakes. This paper presents that unique application and includes the effective integration of lock operations and its impact on the environment.

  20. Modeling cation diffusion in compacted water-saturated Na-bentonite at low ionic strength

    International Nuclear Information System (INIS)

    Bourg, Ian C.; Sposito, Garrison; Bourg, Alain C.M.

    2007-01-01

    Sodium bentonites are used as barrier materials for the isolation of landfills and are under consideration for a similar use in the subsurface storage of high-level radioactive waste. The performance of these barriers is determined in large part by molecular diffusion in the bentonite pore space. We tested two current models of cation diffusion in bentonite against experimental data on the relative apparent diffusion coefficients of two representative cations, sodium and strontium. On the 'macropore/nanopore' model, solute molecules are divided into two categories, with unequal pore-scale diffusion coefficients, based on location: in macropores or in interlayer nanopores. On the 'surface diffusion' model, solute molecules are divided into categories based on chemical speciation: dissolved or adsorbed. The macropore/nanopore model agrees with all experimental data at partial montmorillonite dry densities ranging from 0.2 (a dilute bentonite gel) to 1.7 kg dm -3 (a highly compacted bentonite with most of its pore space located in interlayer nanopores), whereas the surface diffusion model fails at partial montmorillonite dry densities greater than about 1.2 kg dm -3

  1. Modeling cation diffusion in compacted water-saturatedNa-bentonite at low ionic strength

    Energy Technology Data Exchange (ETDEWEB)

    Bourg, Ian C.; Sposito, Garrison; Bourg, Alain C.M.

    2007-08-28

    Sodium bentonites are used as barrier materials for the isolation of landfills and are under consideration for a similar use in the subsurface storage of high-level radioactive waste. The performance of these barriers is determined in large part by molecular diffusion in the bentonite pore space. We tested two current models of cation diffusion in bentonite against experimental data on the relative apparent diffusion coefficients of two representative cations, sodium and strontium. On the 'macropore/nanopore' model, solute molecules are divided into two categories, with unequal pore-scale diffusion coefficients, based on location: in macropores or in interlayer nanopores. On the 'surface diffusion' model, solute molecules are divided into categories based on chemical speciation: dissolved or adsorbed. The macropore/nanopore model agrees with all experimental data at partial montmorillonite dry densities ranging from 0.2 (a dilute bentonite gel) to 1.7 kg dm{sup -3} (a highly compacted bentonite with most of its pore space located in interlayer nanopores), whereas the surface diffusion model fails at partial montmorillonite dry densities greater than about 1.2 kg dm{sup -3}.

  2. Mixing-cell boundary conditions and apparent mass balance errors for advective dispersive solute transport

    Science.gov (United States)

    Gimmi, Thomas; Flühler, Hannes

    1998-09-01

    In many field or laboratory situations, well-mixed reservoirs like, for instance, injection or detection wells and gas distribution or sampling chambers define boundaries of transport domains. Exchange of solutes or gases across such boundaries can occur through advective or diffusive processes. First we analyzed situations, where the inlet region consists of a well-mixed reservoir, in a systematic way by interpreting them in terms of injection type. Second, we discussed the mass balance errors that seem to appear in case of resident injections. Mixing cells (MC) can be coupled mathematically in different ways to a domain where advective-dispersive transport occurs: by assuming a continuous solute flux at the interface (flux injection, MC-FI), or by assuming a continuous resident concentration (resident injection). In the latter case, the flux leaving the mixing cell can be defined in two ways: either as the value when the interface is approached from the mixing-cell side (MC-RI-), or as the value when it is approached from the column side (MC-RI+). Solutions of these injection types with constant or—in one case—distance-dependent transport parameters were compared to each other as well as to a solution of a two-layer system, where the first layer was characterized by a large dispersion coefficient. These solutions differ mainly at small Péclet numbers. For most real situations, the model for resident injection MC-RI+ is considered to be relevant. This type of injection was modeled with a constant or with an exponentially varying dispersion coefficient within the porous medium. A constant dispersion coefficient will be appropriate for gases because of the Eulerian nature of the usually dominating gaseous diffusion coefficient, whereas the asymptotically growing dispersion coefficient will be more appropriate for solutes due to the Lagrangian nature of mechanical dispersion, which evolves only with the fluid flow. Assuming a continuous resident concentration at

  3. Characterisation, quantification and modelling of CO2 transport and interactions in a carbonate vadose zone: application to a CO2 diffusive leakage in a geological sequestration context

    International Nuclear Information System (INIS)

    Cohen, Gregory

    2013-01-01

    . This transfer is done by diffusion and/or advection. Because the detection of the noble gases allows the prediction of CO 2 plume arrival, the use of tracers in the sequestration site is of main importance. The chemical interactions have to be taken under account in transport models in order to predict delay factors and the impact of a CO 2 leakage in a carbonate unsaturated zone. (author)

  4. Diffusion of a collaborative care model in primary care: a longitudinal qualitative study.

    Science.gov (United States)

    Vedel, Isabelle; Ghadi, Veronique; De Stampa, Matthieu; Routelous, Christelle; Bergman, Howard; Ankri, Joel; Lapointe, Liette

    2013-01-04

    Although collaborative team models (CTM) improve care processes and health outcomes, their diffusion poses challenges related to difficulties in securing their adoption by primary care clinicians (PCPs). The objectives of this study are to understand: (1) how the perceived characteristics of a CTM influenced clinicians' decision to adopt -or not- the model; and (2) the model's diffusion process. We conducted a longitudinal case study based on the Diffusion of Innovations Theory. First, diffusion curves were developed for all 175 PCPs and 59 nurses practicing in one borough of Paris. Second, semi-structured interviews were conducted with a representative sample of 40 PCPs and 15 nurses to better understand the implementation dynamics. Diffusion curves showed that 3.5 years after the start of the implementation, 100% of nurses and over 80% of PCPs had adopted the CTM. The dynamics of the CTM's diffusion were different between the PCPs and the nurses. The slopes of the two curves are also distinctly different. Among the nurses, the critical mass of adopters was attained faster, since they adopted the CTM earlier and more quickly than the PCPs. Results of the semi-structured interviews showed that these differences in diffusion dynamics were mostly founded in differences between the PCPs' and the nurses' perceptions of the CTM's compatibility with norms, values and practices and its relative advantage (impact on patient management and work practices). Opinion leaders played a key role in the diffusion of the CTM among PCPs. CTM diffusion is a social phenomenon that requires a major commitment by clinicians and a willingness to take risks; the role of opinion leaders is key. Paying attention to the notion of a critical mass of adopters is essential to developing implementation strategies that will accelerate the adoption process by clinicians.

  5. Diffusion of a collaborative care model in primary care: a longitudinal qualitative study

    Directory of Open Access Journals (Sweden)

    Vedel Isabelle

    2013-01-01

    Full Text Available Background Although collaborative team models (CTM improve care processes and health outcomes, their diffusion poses challenges related to difficulties in securing their adoption by primary care clinicians (PCPs. The objectives of this study are to understand: (1 how the perceived characteristics of a CTM influenced clinicians' decision to adopt -or not- the model; and (2 the model's diffusion process. Methods We conducted a longitudinal case study based on the Diffusion of Innovations Theory. First, diffusion curves were developed for all 175 PCPs and 59 nurses practicing in one borough of Paris. Second, semi-structured interviews were conducted with a representative sample of 40 PCPs and 15 nurses to better understand the implementation dynamics. Results Diffusion curves showed that 3.5 years after the start of the implementation, 100% of nurses and over 80% of PCPs had adopted the CTM. The dynamics of the CTM's diffusion were different between the PCPs and the nurses. The slopes of the two curves are also distinctly different. Among the nurses, the critical mass of adopters was attained faster, since they adopted the CTM earlier and more quickly than the PCPs. Results of the semi-structured interviews showed that these differences in diffusion dynamics were mostly founded in differences between the PCPs' and the nurses' perceptions of the CTM's compatibility with norms, values and practices and its relative advantage (impact on patient management and work practices. Opinion leaders played a key role in the diffusion of the CTM among PCPs. Conclusion CTM diffusion is a social phenomenon that requires a major commitment by clinicians and a willingness to take risks; the role of opinion leaders is key. Paying attention to the notion of a critical mass of adopters is essential to developing implementation strategies that will accelerate the adoption process by clinicians.

  6. Modeling of the interplay between single-file diffusion and conversion reaction in mesoporous systems

    Energy Technology Data Exchange (ETDEWEB)

    Wang, Jing [Iowa State Univ., Ames, IA (United States)

    2013-01-11

    We analyze the spatiotemporal behavior of species concentrations in a diffusion-mediated conversion reaction which occurs at catalytic sites within linear pores of nanometer diameter. A strict single-file (no passing) constraint occurs in the diffusion within such narrow pores. Both transient and steady-state behavior is precisely characterized by kinetic Monte Carlo simulations of a spatially discrete lattice–gas model for this reaction–diffusion process considering various distributions of catalytic sites. Exact hierarchical master equations can also be developed for this model. Their analysis, after application of mean-field type truncation approximations, produces discrete reaction–diffusion type equations (mf-RDE). For slowly varying concentrations, we further develop coarse-grained continuum hydrodynamic reaction–diffusion equations (h-RDE) incorporating a precise treatment of single-file diffusion (SFD) in this multispecies system. Noting the shortcomings of mf-RDE and h-RDE, we then develop a generalized hydrodynamic (GH) formulation of appropriate gh-RDE which incorporates an unconventional description of chemical diffusion in mixed-component quasi-single-file systems based on a refined picture of tracer diffusion for finite-length pores. The gh-RDE elucidate the non-exponential decay of the steady-state reactant concentration into the pore and the non-mean-field scaling of the reactant penetration depth. Then an extended model of a catalytic conversion reaction within a functionalized nanoporous material is developed to assess the effect of varying the reaction product – pore interior interaction from attractive to repulsive. The analysis is performed utilizing the generalized hydrodynamic formulation of the reaction-diffusion equations which can reliably capture the complex interplay between reaction and restricted transport for both irreversible and reversible reactions.

  7. Bistable front dynamics in a contractile medium: Travelling wave fronts and cortical advection define stable zones of RhoA signaling at epithelial adherens junctions

    Science.gov (United States)

    Budnar, Srikanth; Yap, Alpha S.

    2017-01-01

    Mechanical coherence of cell layers is essential for epithelia to function as tissue barriers and to control active tissue dynamics during morphogenesis. RhoA signaling at adherens junctions plays a key role in this process by coupling cadherin-based cell-cell adhesion together with actomyosin contractility. Here we propose and analyze a mathematical model representing core interactions involved in the spatial localization of junctional RhoA signaling. We demonstrate how the interplay between biochemical signaling through positive feedback, combined with diffusion on the cell membrane and mechanical forces generated in the cortex, can determine the spatial distribution of RhoA signaling at cell-cell junctions. This dynamical mechanism relies on the balance between a propagating bistable signal that is opposed by an advective flow generated by an actomyosin stress gradient. Experimental observations on the behavior of the system when contractility is inhibited are in qualitative agreement with the predictions of the model. PMID:28273072

  8. Bistable front dynamics in a contractile medium: Travelling wave fronts and cortical advection define stable zones of RhoA signaling at epithelial adherens junctions.

    Directory of Open Access Journals (Sweden)

    Rashmi Priya

    2017-03-01

    Full Text Available Mechanical coherence of cell layers is essential for epithelia to function as tissue barriers and to control active tissue dynamics during morphogenesis. RhoA signaling at adherens junctions plays a key role in this process by coupling cadherin-based cell-cell adhesion together with actomyosin contractility. Here we propose and analyze a mathematical model representing core interactions involved in the spatial localization of junctional RhoA signaling. We demonstrate how the interplay between biochemical signaling through positive feedback, combined with diffusion on the cell membrane and mechanical forces generated in the cortex, can determine the spatial distribution of RhoA signaling at cell-cell junctions. This dynamical mechanism relies on the balance between a propagating bistable signal that is opposed by an advective flow generated by an actomyosin stress gradient. Experimental observations on the behavior of the system when contractility is inhibited are in qualitative agreement with the predictions of the model.

  9. A novel rumor diffusion model considering the effect of truth in online social media

    Science.gov (United States)

    Sun, Ling; Liu, Yun; Zeng, Qing-An; Xiong, Fei

    2015-12-01

    In this paper, we propose a model to investigate how truth affects rumor diffusion in online social media. Our model reveals a relation between rumor and truth — namely, when a rumor is diffusing, the truth about the rumor also diffuses with it. Two patterns of the agents used to identify rumor, self-identification and passive learning are taken into account. Combining theoretical proof and simulation analysis, we find that the threshold value of rumor diffusion is negatively correlated to the connectivity between nodes in the network and the probability β of agents knowing truth. Increasing β can reduce the maximum density of the rumor spreaders and slow down the generation speed of new rumor spreaders. On the other hand, we conclude that the best rumor diffusion strategy must balance the probability of forwarding rumor and the probability of agents losing interest in the rumor. High spread rate λ of rumor would lead to a surge in truth dissemination which will greatly limit the diffusion of rumor. Furthermore, in the case of unknown λ, increasing β can effectively reduce the maximum proportion of agents who do not know the truth, but cannot narrow the rumor diffusion range in a certain interval of β.

  10. Modeling diffusion of adsorbed polymer with explicit solvent.

    Science.gov (United States)

    Desai, Tapan G; Keblinski, Pawel; Kumar, Sanat K; Granick, Steve

    2007-05-25

    Computer simulations of a polymer chain of length N strongly adsorbed at the solid-liquid interface in the presence of explicit solvent are used to delineate the factors affecting the N dependence of the polymer lateral diffusion coefficient, D(||). We find that surface roughness has a large influence, and D(||) scales as D(||) approximately N(-x), with x approximately 3/4 and x approximately 1 for ideal smooth and corrugated surfaces, respectively. The first result is consistent with the hydrodynamics of a "particle" of radius of gyration R(G) approximately N(nu) (nu=0.75) translating parallel to a planar interface, while the second implies that the friction of the adsorbed chains dominates. These results are discussed in the context of recent measurements.

  11. Attractor for a Reaction-Diffusion System Modeling Cancer Network

    Directory of Open Access Journals (Sweden)

    Xueyong Chen

    2014-01-01

    Full Text Available A reaction-diffusion cancer network regulated by microRNA is considered in this paper. We study the asymptotic behavior of solution and show the existence of global uniformly bounded solution to the system in a bounded domain Ω⊂Rn. Some estimates and asymptotic compactness of the solutions are proved. As a result, we establish the existence of the global attractor in L2(Ω×L2(Ω and prove that the solution converges to stable steady states. These results can help to understand the dynamical character of cancer network and propose a new insight to study the mechanism of cancer. In the end, the numerical simulation shows that the analytical results agree with numerical simulation.

  12. Normal and anomalous diffusion of gravel tracer particles in rivers

    Science.gov (United States)

    Ganti, Vamsi; Meerschaert, Mark M.; Foufoula-Georgiou, Efi; Viparelli, Enrica; Parker, Gary

    2010-06-01

    One way to study the mechanism of gravel bed load transport is to seed the bed with marked gravel tracer particles within a chosen patch and to follow the pattern of migration and dispersal of particles from this patch. In this study, we invoke the probabilistic Exner equation for sediment conservation of bed gravel, formulated in terms of the difference between the rate of entrainment of gravel into motion and the rate of deposition from motion. Assuming an active layer formulation, stochasticity in particle motion is introduced by considering the step length (distance traveled by a particle once entrained until it is deposited) as a random variable. For step lengths with a relatively thin (e.g., exponential) tail, the above formulation leads to the standard advection-diffusion equation for tracer dispersal. However, the complexity of rivers, characterized by a broad distribution of particle sizes and extreme flood events, can give rise to a heavy-tailed distribution of step lengths. This consideration leads to an anomalous advection-diffusion equation involving fractional derivatives. By identifying the probabilistic Exner equation as a forward Kolmogorov equation for the location of a randomly selected tracer particle, a stochastic model describing the temporal evolution of the relative concentrations is developed. The normal and anomalous advection-diffusion equations are revealed as its long-time asymptotic solution. Sample numerical results illustrate the large differences that can arise in predicted tracer concentrations under the normal and anomalous diffusion models. They highlight the need for intensive data collection efforts to aid the selection of the appropriate model in real rivers.

  13. Conceptual model for transport processes in the Culebra Dolomite Member, Rustler Formation

    Energy Technology Data Exchange (ETDEWEB)

    Holt, R.M. [Holt Hydrogeology, Placitas, NM (United States)

    1997-08-01

    The Culebra Dolomite Member of the Rustler Formation represents a possible pathway for contaminants from the Waste Isolation Pilot Plant underground repository to the accessible environment. The geologic character of the Culebra is consistent with a double-porosity, multiple-rate model for transport in which the medium is conceptualized as consisting of advective porosity, where solutes are carried by the groundwater flow, and fracture-bounded zones of diffusive porosity, where solutes move through slow advection or diffusion. As the advective travel length or travel time increases, the nature of transport within a double-porosity medium changes. This behavior is important for chemical sorption, because the specific surface area per unit mass of the diffusive porosity is much greater than in the advective porosity. Culebra transport experiments conducted at two different length scales show behavior consistent with a multiple-rate, double-porosity conceptual model for Culebra transport. Tracer tests conducted on intact core samples from the Culebra show no evidence of significant diffusion, suggesting that at the core scale the Culebra can be modeled as a single-porosity medium where only the advective porosity participates in transport. Field tracer tests conducted in the Culebra show strong double-porosity behavior that is best explained using a multiple-rate model.

  14. Onset to First Alcohol Use in Early Adolescence : A Network Diffusion Model

    NARCIS (Netherlands)

    Light, John M.; Greenan, Charlotte C.; Rusby, Julie C.; Nies, Kimberley M.; Snijders, Tom A. B.

    A novel version of Snijders's stochastic actor-based modeling (SABM) framework is applied to model the diffusion of first alcohol use through middle school-wide longitudinal networks of early adolescents, aged approximately 11-14years. Models couple a standard SABM for friendship network evolution

  15. THE MATHEMATIC MODEL OF POTENTIAL RELAXATION IN COULOSTATIC CONDITIONS FOR LIMITING DIFFUSION CURRENT CASE

    Directory of Open Access Journals (Sweden)

    O. H. Kapitonov

    2010-05-01

    Full Text Available A mathematical model of coulostatic relaxation of the potential for solid metallic electrode was presented. The solution in the case of limiting diffusion current was obtained. On the basis of this model the technique of concentration measurements for heavy metal ions in diluted solutions was suggested. The model adequacy was proved by experimental data.

  16. The EZ diffusion model provides a powerful test of simple empirical effects

    NARCIS (Netherlands)

    van Ravenzwaaij, Don; Donkin, Chris; Vandekerckhove, Joachim

    Over the last four decades, sequential accumulation models for choice response times have spread through cognitive psychology like wildfire. The most popular style of accumulator model is the diffusion model (Ratcliff Psychological Review, 85, 59–108, 1978), which has been shown to account for data

  17. Generalized random walk algorithm for the numerical modeling of complex diffusion processes

    CERN Document Server

    Vamos, C; Vereecken, H

    2003-01-01

    A generalized form of the random walk algorithm to simulate diffusion processes is introduced. Unlike the usual approach, at a given time all the particles from a grid node are simultaneously scattered using the Bernoulli repartition. This procedure saves memory and computing time and no restrictions are imposed for the maximum number of particles to be used in simulations. We prove that for simple diffusion the method generalizes the finite difference scheme and gives the same precision for large enough number of particles. As an example, simulations of diffusion in random velocity field are performed and the main features of the stochastic mathematical model are numerically tested.

  18. Advective flow as an early diagenetic agent in coastal marine sediments

    Science.gov (United States)

    Riedel, Thomas; Lettmann, Karsten; Beck, Melanie; Schnetger, Bernhard; Brumsack, Hans-Jürgen

    2010-05-01

    Offshore intertidal sand and mud flats are subject to tidally forced ground water flow leading to circulation and subsequent discharge of ground waters to the coastal ocean. These waters have passed organic-rich, relatively young sediments that harbor active microbial communities. A number of biogeochemical processes alter the chemical composition of the circulating sea water of which the most prominent one is microbial sulphate reduction. As a result of these processes discharging ground waters are strongly enriched in certain trace metals (Mn, Ba, V), nutrients (Ammonia, Dissolved inorganic carbon (DIC), Phosphate, Silicate) and depleted in others (such as Mo, U). Advective flow therefore drives a biogeochemical alteration of sea water. So far, pore water chemistry indicates that tidal creek margins, where advective flow is most significant, show stronger chemical gradients compared to sites from the central tidal flat, where diffusion appears to dominate. To investigate the role of advection we mapped the geochemistry down to 2.5 meters sediment depth along a transect from the creek to the central tidal flat using push-point samplers that allow almost artifact-free in-situ sampling of pore waters. Additionally a recently developed hydrogeological simulation of the creek margin was applied to calculate ages of the sampled pore waters. The simulation was calibrated by comparison of measured in-situ pressure heads with simulated ones. Sample ages obtained were used to quantify averaged production or depletion rates for trace metals, nutrients and sulphate. Our results demonstrate that sites dominated by advection generally show higher rates of turnover for almost all species investigated. Averaged production rates for Ba, Mn, ammonia or DIC appear to be 10 to more than 30 times higher when advection dominated the subsurface flow regime. Based on these findings we speculate whether advective ground water flow in marine sediments may be regarded as a geological agent

  19. On Modelling Long Term Stock Returns with Ergodic Diffusion Processes: Arbitrage and Arbitrage-Free Specifications

    Directory of Open Access Journals (Sweden)

    Bernard Wong

    2009-01-01

    martingale component is based on an ergodic diffusion with a specified stationary distribution. These models are particularly useful for long horizon asset-liability management as they allow the modelling of long term stock returns with heavy tail ergodic diffusions, with tractable, time homogeneous dynamics, and which moreover admit a complete financial market, leading to unique pricing and hedging strategies. Unfortunately the standard specifications of these models in literature admit arbitrage opportunities. We investigate in detail the features of the existing model specifications which create these arbitrage opportunities and consequently construct a modification that is arbitrage free.

  20. Modeling the relationship between body weight and energy intake: a molecular diffusion-based approach.

    Science.gov (United States)

    Gong, Zhejun; Gong, Zhefeng

    2012-06-29

    Body weight is at least partly controlled by the choices made by a human in response to external stimuli. Changes in body weight are mainly caused by energy intake. By analyzing the mechanisms involved in food intake, we considered that molecular diffusion plays an important role in body weight changes. We propose a model based on Fick's second law of diffusion to simulate the relationship between energy intake and body weight. This model was applied to food intake and body weight data recorded in humans; the model showed a good fit to the experimental data. This model was also effective in predicting future body weight. In conclusion, this model based on molecular diffusion provides a new insight into the body weight mechanisms. This article was reviewed by Dr. Cabral Balreira (nominated by Dr. Peter Olofsson), Prof. Yang Kuang and Dr. Chao Chen.

  1. Applicability of heat and gas trans-port models in biocover design based on a case study from Denmark

    DEFF Research Database (Denmark)

    Nielsen, A. A. F.; Binning, Philip John; Kjeldsen, Peter

    2015-01-01

    . Both models used the heat equation for heat transfer, and the numerical model used advection-diffusion model with dual Monod kinetics for gas transport. The results were validated with data from a Danish landfi The models correlated well with the observed data: the coefficient of determination (R2...

  2. Many-server queues with customer abandonment: Numerical analysis of their diffusion model

    OpenAIRE

    Dai, J. G.; He, Shuangchi

    2013-01-01

    We use a multidimensional diffusion process to approximate the dynamics of a queue served by many parallel servers. Waiting customers in this queue may abandon the system without service. To analyze the diffusion model, we develop a numerical algorithm for computing its stationary distribution. A crucial part of the algorithm is choosing an appropriate reference density. Using a conjecture on the tail behavior of the limit queue length process, we propose a systematic approach to constructing...

  3. Modeling Diffusion and Buoyancy-Driven Convection with Application to Geological CO2 Storage

    KAUST Repository

    Allen, Rebecca

    2015-04-01

    ABSTRACT Modeling Diffusion and Buoyancy-Driven Convection with Application to Geological CO2 Storage Rebecca Allen Geological CO2 storage is an engineering feat that has been undertaken around the world for more than two decades, thus accurate modeling of flow and transport behavior is of practical importance. Diffusive and convective transport are relevant processes for buoyancy-driven convection of CO2 into underlying fluid, a scenario that has received the attention of numerous modeling studies. While most studies focus on Darcy-scale modeling of this scenario, relatively little work exists at the pore-scale. In this work, properties evaluated at the pore-scale are used to investigate the transport behavior modeled at the Darcy-scale. We compute permeability and two different forms of tortuosity, namely hydraulic and diffusive. By generating various pore ge- ometries, we find hydraulic and diffusive tortuosity can be quantitatively different in the same pore geometry by up to a factor of ten. As such, we emphasize that these tortuosities should not be used interchangeably. We find pore geometries that are characterized by anisotropic permeability can also exhibit anisotropic diffusive tortuosity. This finding has important implications for buoyancy-driven convection modeling; when representing the geological formation with an anisotropic permeabil- ity, it is more realistic to also account for an anisotropic diffusivity. By implementing a non-dimensional model that includes both a vertically and horizontally orientated 5 Rayleigh number, we interpret our findings according to the combined effect of the anisotropy from permeability and diffusive tortuosity. In particular, we observe the Rayleigh ratio may either dampen or enhance the diffusing front, and our simulation data is used to express the time of convective onset as a function of the Rayleigh ratio. Also, we implement a lattice Boltzmann model for thermal convective flows, which we treat as an analog for

  4. Urban stormwater inundation simulation based on SWMM and diffusive overland-flow model.

    Science.gov (United States)

    Chen, Wenjie; Huang, Guoru; Zhang, Han

    2017-12-01

    With rapid urbanization, inundation-induced property losses have become more and more severe. Urban inundation modeling is an effective way to reduce these losses. This paper introduces a simplified urban stormwater inundation simulation model based on the United States Environmental Protection Agency Storm Water Management Model (SWMM) and a geographic information system (GIS)-based diffusive overland-flow model. SWMM is applied for computation of flows in storm sewer systems and flooding flows at junctions, while the GIS-based diffusive overland-flow model simulates surface runoff and inundation. One observed rainfall scenario on Haidian Island, Hainan Province, China was chosen to calibrate the model and the other two were used for validation. Comparisons of the model results with field-surveyed data and InfoWorks ICM (Integrated Catchment Modeling) modeled results indicated the inundation model in this paper can provide inundation extents and reasonable inundation depths even in a large study area.

  5. Disentangling the major source areas for an intense aerosol advection in the Central Mediterranean on the basis of Potential Source Contribution Function modeling of chemical and size distribution measurements

    Science.gov (United States)

    Petroselli, Chiara; Crocchianti, Stefano; Moroni, Beatrice; Castellini, Silvia; Selvaggi, Roberta; Nava, Silvia; Calzolai, Giulia; Lucarelli, Franco; Cappelletti, David

    2018-05-01

    In this paper, we combined a Potential Source Contribution Function (PSCF) analysis of daily chemical aerosol composition data with hourly aerosol size distributions with the aim to disentangle the major source areas during a complex and fast modulating advection event impacting on Central Italy in 2013. Chemical data include an ample set of metals obtained by Proton Induced X-ray Emission (PIXE), main soluble ions from ionic chromatography and elemental and organic carbon (EC, OC) obtained by thermo-optical measurements. Size distributions have been recorded with an optical particle counter for eight calibrated size classes in the 0.27-10 μm range. We demonstrated the usefulness of the approach by the positive identification of two very different source areas impacting during the transport event. In particular, biomass burning from Eastern Europe and desert dust from Sahara sources have been discriminated based on both chemistry and size distribution time evolution. Hourly BT provided the best results in comparison to 6 h or 24 h based calculations.

  6. Turbulent diffusion and transport from a CO2 lake in the deep ocean

    OpenAIRE

    Haugan, Peter Mosby; Alendal, Guttorm

    2005-01-01

    If liquid CO2 is stored as a dense ‘‘lake’’ on the deep ocean floor, it is expected to dissolve in seawater. Ocean currents and turbulence can increase the net rate of CO2 release by several orders of magnitude compared to molecular diffusion. However, density stratification in the seawater created by dissolved CO2 will tend to reduce vertical mixing. A two-dimensional numerical study with a high-resolution advection-diffusion model, coupled with a general turbulence model, reveals significan...

  7. Simulating watercolor by modeling diffusion, pigment, and paper fibers

    Science.gov (United States)

    Small, David

    1991-08-01

    This paper explores a parallel approach to the problem of predicting the actions of pigment and water when applied to paper fibers. This work was done on the Connection Machine II, whose parallel architecture allows one to cast the problem as that of a complex cellular automata. One defines simple rules for the behavior of each cell based on the state of that cell and its immediate neighbors. By repeating the computation for each cell in the paper over many time steps, elaborate and realistic behaviors can be achieved. The simulation takes into account diffusion, surface tension, gravity, humidity, paper absorbency and the molecular weight of each pigment. At each time step a processor associated with each fiber in the paper computes water and pigment gradients, surface tension and gravitational forces, and decides if there should be any movement of material. Pigment and water can be applied and removed (blotting) with masks created from type or scanned images. Use of a parallel processor simplifies the creation and testing of software, and variables can be stored and manipulated at highprecision. The resulting simulation runs at approximately one-tenth real time.

  8. Multi-component fiber track modelling of diffusion-weighted magnetic resonance imaging data

    Directory of Open Access Journals (Sweden)

    Yasser M. Kadah

    2010-01-01

    Full Text Available In conventional diffusion tensor imaging (DTI based on magnetic resonance data, each voxel is assumed to contain a single component having diffusion properties that can be fully represented by a single tensor. Even though this assumption can be valid in some cases, the general case involves the mixing of components, resulting in significant deviation from the single tensor model. Hence, a strategy that allows the decomposition of data based on a mixture model has the potential of enhancing the diagnostic value of DTI. This project aims to work towards the development and experimental verification of a robust method for solving the problem of multi-component modelling of diffusion tensor imaging data. The new method demonstrates significant error reduction from the single-component model while maintaining practicality for clinical applications, obtaining more accurate Fiber tracking results.

  9. Inclusion of the diffuseness in the schematic model of heavy ion collisions

    International Nuclear Information System (INIS)

    Marta, H.D.

    1989-01-01

    The schematic model of central heavy ion collisions developed by Swiatecki includes the Coulomb and surface contributions to the potential energy of the system and one-body dissipation. This model is extended by considering the diffuseness of the nuclear surface; this has the implication that we must consider the proximity forces in the dynamics of the collisions. For the sake of simplicity we work with symmetrical systems. The results of the model studied are compared with experimental data and with other theoretical calculations. We conclude that the detailed consideration of the diffuseness of the nuclear surfaces does not substantially change the results of the schematic model for sharp surfaces in which the diffuseness is considered only through the parameters. (author) [pt

  10. Three-dimensional, time-dependent modeling of neutral gas diffusion in a nonuniform, chemically reactive atmosphere

    International Nuclear Information System (INIS)

    Bernhardt, P.A.

    1979-01-01

    A time-varying model of neutral gas expansion in a nonuniform environment is developed. The model includes diffusion in a multicomponent atmosphere, chemical reactions between the diffusing gases and the atmosphere, thermal diffusion effects, and transport due to altitude-dependent winds. The three-dimensional diffusion equation governing the neutral gas flow is solved numerically using Fourier transform and finite difference techniques. Examples of H 2 , OH, and CO 2 diffusion illustrate the effects of chemical reactions and wind shears on the neutral expansion. The model may be applied to chemical releases which produce ionospheric depletions or luminescent trails

  11. A New Model for Estimating the Diffuse Fraction of Solar Irradiance for Photovoltaic System Simulations

    Directory of Open Access Journals (Sweden)

    Martin Hofmann

    2017-02-01

    Full Text Available We present a new model for the calculation of the diffuse fraction of the global solar irradiance for solar system simulations. The importance of an accurate estimation of the horizontal diffuse irradiance is highlighted by findings that an inaccurately calculated diffuse irradiance can lead to significant over- or underestimations in the annual energy yield of a photovoltaic (PV system by as much as 8%. Our model utilizes a time series of global irradiance in one-minute resolution and geographical information as input. The model is validated by measurement data of 28 geographically and climatologically diverse locations worldwide with one year of one-minute data each, taken from the Baseline Surface Radiation Network (BSRN. We show that on average the mean absolute deviation of the modelled and the measured diffuse irradiance is reduced from about 12% to about 6% compared to three reference models. The maximum deviation is less than 20%. In more than 80% of the test cases, the deviation is smaller 10%. The root mean squared error (RMSE of the calculated diffuse fractions is reduced by about 18%.

  12. Forecasting turbulent modes with nonparametric diffusion models: Learning from noisy data

    Science.gov (United States)

    Berry, Tyrus; Harlim, John

    2016-04-01

    In this paper, we apply a recently developed nonparametric modeling approach, the "diffusion forecast", to predict the time-evolution of Fourier modes of turbulent dynamical systems. While the diffusion forecasting method assumes the availability of a noise-free training data set observing the full state space of the dynamics, in real applications we often have only partial observations which are corrupted by noise. To alleviate these practical issues, following the theory of embedology, the diffusion model is built using the delay-embedding coordinates of the data. We show that this delay embedding biases the geometry of the data in a way which extracts the most stable component of the dynamics and reduces the influence of independent additive observation noise. The resulting diffusion forecast model approximates the semigroup solutions of the generator of the underlying dynamics in the limit of large data and when the observation noise vanishes. As in any standard forecasting problem, the forecasting skill depends crucially on the accuracy of the initial conditions. We introduce a novel Bayesian method for filtering the discrete-time noisy observations which works with the diffusion forecast to determine the forecast initial densities. Numerically, we compare this nonparametric approach with standard stochastic parametric models on a wide-range of well-studied turbulent modes, including the Lorenz-96 model in weakly chaotic to fully turbulent regimes and the barotropic modes of a quasi-geostrophic model with baroclinic instabilities. We show that when the only available data is the low-dimensional set of noisy modes that are being modeled, the diffusion forecast is indeed competitive to the perfect model.

  13. Experimental validation of Pd-Ag diffuser modeling

    International Nuclear Information System (INIS)

    Chabot, J.; Sannier, J.

    1992-01-01

    In a nuclear fusion reactor the exhaust gas emanating from the plasma has to be reprocessed in order to separate hydrogen isotopes from impurities before recycling the DT mixture into the machine and releasing the gaseous wastes into the atmosphere. A favoured technique for the removing of the free deuterium and tritium is diffusion through Pd-alloy membranes. This process is well known but existing permeators are not really well adapted to NET operating conditions. In particular, the membrane geometry and the permeator configuration which can strongly affect permeator performances have to be optimized by considering NET specific requirements. Tubular finger Pd-Ag membranes of 1.35 to 5 mm diameter, 190 to 690 mm length and 0.1 mm thickness, have been tested comparatively in PALLAS II loop in order to determine their efficiency to hydrogen permeation as a function of length, diameter and cell annular space. Experiments were carried out at 300 deg C using a H 2 -He gaseous mixture containing 5 vol% He under a pressure of 1.1 bar. For each membrane, the permeated hydrogen flow rate and the hydrogen concentration in the bleed were determined as a function of the bleed flow rate. Results illustrate the large dependence of performances to diameter and length whereas the influence of the annular space cell diameter appears to be small. However, for diameters ≥ 2.5 mm, the efficiency becomes diameter independent. Two membranes of 2.5 and 5 mm diameter and 690 mm long have been demonstrated as the more effective

  14. Modelling Of Eco-innovation Diffusion: The EU Eco-label

    Directory of Open Access Journals (Sweden)

    KIJEK TOMASZ

    2015-03-01

    Full Text Available The aim of this article is to carry out a theoretical and empirical analysis of the process of eco-label diffusion. Eco-labels allow consumers to identify products and services that have a reduced environmental impact during their life cycle. Thus, they are aimed at diminishing the information gap between sellers and buyers. The results of the estimation using the Bass model indicate that the diffusion of the EU eco-label has been most dynamic in countries such as Hungary, Poland, Denmark, Germany and France. In turn, the scope of diffusion (absolute saturation level reached the highest value for companies in France and Italy. In addition, the results of the study confirm the stimulating impact of the scope of eco-label diffusion on consumer awareness of environmental issues. This finding points to the need for environmental education among consumers, which could in turn encourage firms to undertake pro-environmental actions.

  15. Large Time Asymptotics for a Continuous Coagulation-Fragmentation Model with Degenerate Size-Dependent Diffusion

    KAUST Repository

    Desvillettes, Laurent

    2010-01-01

    We study a continuous coagulation-fragmentation model with constant kernels for reacting polymers (see [M. Aizenman and T. Bak, Comm. Math. Phys., 65 (1979), pp. 203-230]). The polymers are set to diffuse within a smooth bounded one-dimensional domain with no-flux boundary conditions. In particular, we consider size-dependent diffusion coefficients, which may degenerate for small and large cluster-sizes. We prove that the entropy-entropy dissipation method applies directly in this inhomogeneous setting. We first show the necessary basic a priori estimates in dimension one, and second we show faster-than-polynomial convergence toward global equilibria for diffusion coefficients which vanish not faster than linearly for large sizes. This extends the previous results of [J.A. Carrillo, L. Desvillettes, and K. Fellner, Comm. Math. Phys., 278 (2008), pp. 433-451], which assumes that the diffusion coefficients are bounded below. © 2009 Society for Industrial and Applied Mathematics.

  16. An agent-based model for diffusion of electric vehicles

    NARCIS (Netherlands)

    Kangur, A.; Bockarjova, M.; Jager, W.; Verbrugge, R.

    2017-01-01

    The transition from fuel cars to electric cars is a large-scale process involving many interactions between consumers and other stakeholders over decades. To explore how policies may interfere with consumer behavior over such a long time period, we developed a social simulation model. In this model,

  17. Proposing an Educational Scaling-and-Diffusion Model for Inquiry-Based Learning Designs

    Science.gov (United States)

    Hung, David; Lee, Shu-Shing

    2015-01-01

    Education cannot adopt the linear model of scaling used by the medical sciences. "Gold standards" cannot be replicated without considering process-in-learning, diversity, and student-variedness in classrooms. This article proposes a nuanced model of educational scaling-and-diffusion, describing the scaling (top-down supports) and…

  18. A comparison of molecular dynamics and diffuse interface model predictions of Lennard-Jones fluid evaporation

    Energy Technology Data Exchange (ETDEWEB)

    Barbante, Paolo [Dipartimento di Matematica, Politecnico di Milano - Piazza Leonardo da Vinci 32 - 20133 Milano (Italy); Frezzotti, Aldo; Gibelli, Livio [Dipartimento di Scienze e Tecnologie Aerospaziali, Politecnico di Milano - Via La Masa 34 - 20156 Milano (Italy)

    2014-12-09

    The unsteady evaporation of a thin planar liquid film is studied by molecular dynamics simulations of Lennard-Jones fluid. The obtained results are compared with the predictions of a diffuse interface model in which capillary Korteweg contributions are added to hydrodynamic equations, in order to obtain a unified description of the liquid bulk, liquid-vapor interface and vapor region. Particular care has been taken in constructing a diffuse interface model matching the thermodynamic and transport properties of the Lennard-Jones fluid. The comparison of diffuse interface model and molecular dynamics results shows that, although good agreement is obtained in equilibrium conditions, remarkable deviations of diffuse interface model predictions from the reference molecular dynamics results are observed in the simulation of liquid film evaporation. It is also observed that molecular dynamics results are in good agreement with preliminary results obtained from a composite model which describes the liquid film by a standard hydrodynamic model and the vapor by the Boltzmann equation. The two mathematical model models are connected by kinetic boundary conditions assuming unit evaporation coefficient.

  19. Investigation of Field-Collected Data Using Diffuse and Specular, Forward and Reverse Radiative Transfer Models

    Science.gov (United States)

    2015-03-26

    each panel. The laboratory-collected data is comprised of spectral hemispherical, specular, and diffuse directional reflectance (HDR, SDR , and DDR...Radiative Transfer Model (HDR only) ..........................................................19 Expanded Radiative Transfer Model (HDR, DDR, and SDR ...37 Figure 8. HDR, DDR, and SDR of an aged sample of Infragold® ................................. 40 Figure 9

  20. Bifurcation Analysis of Gene Propagation Model Governed by Reaction-Diffusion Equations

    Directory of Open Access Journals (Sweden)

    Guichen Lu

    2016-01-01

    Full Text Available We present a theoretical analysis of the attractor bifurcation for gene propagation model governed by reaction-diffusion equations. We investigate the dynamical transition problems of the model under the homogeneous boundary conditions. By using the dynamical transition theory, we give a complete characterization of the bifurcated objects in terms of the biological parameters of the problem.

  1. Modeling diffusion coefficients in binary mixtures of polar and non-polar compounds

    DEFF Research Database (Denmark)

    Medvedev, Oleg; Shapiro, Alexander

    2005-01-01

    The theory of transport coefficients in liquids, developed previously, is tested on a description of the diffusion coefficients in binary polar/non-polar mixtures, by applying advanced thermodynamic models. Comparison to a large set of experimental data shows good performance of the model. Only...

  2. On the well posedness and further regularity of a diffusive three species aquatic model

    KAUST Repository

    Parshad, R.D.

    2012-01-01

    We consider Upadhay\\'s three species aquatic food chain model, with the inclusion of spatial spread. This is a well established food chain model for the interaction of three given aquatic species. It exhibits rich dynamical behavior, including chaos. We prove the existence of a global weak solution to the diffusive system, followed by existence of local mild and strong solution.

  3. Technology diffusion in hospitals : A log odds random effects regression model

    NARCIS (Netherlands)

    Blank, J.L.T.; Valdmanis, V.G.

    2013-01-01

    This study identifies the factors that affect the diffusion of hospital innovations. We apply a log odds random effects regression model on hospital micro data. We introduce the concept of clustering innovations and the application of a log odds random effects regression model to describe the

  4. Technology diffusion in hospitals: A log odds random effects regression model

    NARCIS (Netherlands)

    J.L.T. Blank (Jos); V.G. Valdmanis (Vivian G.)

    2015-01-01

    textabstractThis study identifies the factors that affect the diffusion of hospital innovations. We apply a log odds random effects regression model on hospital micro data. We introduce the concept of clustering innovations and the application of a log odds random effects regression model to

  5. Modeling the oxygen diffusion of nanocomposite-based food packaging films.

    Science.gov (United States)

    Bhunia, Kanishka; Dhawan, Sumeet; Sablani, Shyam S

    2012-07-01

    Polymer-layered silicate nanocomposites have been shown to improve the gas barrier properties of food packaging polymers. This study developed a computer simulation model using the commercial software, COMSOL Multiphysics to analyze changes in oxygen barrier properties in terms of relative diffusivity, as influenced by configuration and structural parameters that include volume fraction (φ), aspect ratio (α), intercalation width (W), and orientation angle (θ) of nanoparticles. The simulation was performed at different φ (1%, 3%, 5%, and 7%), α (50, 100, 500, and 1000), and W (1, 3, 5, and 7 nm). The θ value was varied from 0° to 85°. Results show that diffusivity decreases with increasing volume fraction, but beyond φ = 5% and α = 500, diffusivity remained almost constant at W values of 1 and 3 nm. Higher relative diffusivity coincided with increasing W and decreasing α value for the same volume fraction of nanoparticles. Diffusivity increased as the rotational angle increased, gradually diminishing the influence of nanoparticles. Diffusivity increased drastically as θ changed from 15° to 30° (relative increment in relative diffusivity was almost 3.5 times). Nanoparticles with exfoliation configuration exhibited better oxygen barrier properties compared to intercalation. The finite element model developed in this study provides insight into oxygen barrier properties for nanocomposite with a wide range of structural parameters. This model can be used to design and manufacture an ideal nanocomposite-based food packaging film with improved gas barrier properties for industrial applications. The model will assist in designing nanocomposite polymeric structures of desired gas barrier properties for food packaging applications. In addition, this study will be helpful in formulating a combination of nanoparticle structural parameters for designing nanocomposite membranes with selective permeability for the industrial applications including membrane

  6. A new model of tail diffusion of phosphorus and boron in silicon

    International Nuclear Information System (INIS)

    Morehead, F.F.; Lever, R.F.

    1986-01-01

    It is well known that high surface concentration phosphorus diffusion leads to deeply penetrating tails in its concentration profile. At 700 0 C the tail diffusivity exceeds that of low concentration phosphorus by a factor of a thousand. Less spectacular, but very significant tailing also affects boron, making the conventional models contained in commonly available process simulation programs quite inaccurate for boron diffusions with high surface concentrations. The authors show that the observed tailing can be accounted for by a model whose central assumption is the local equality of dopant and oppositely directed defect fluxes. As predicted by the model, the effect is greatest for normal processing at low temperatures for high surface concentrations. It is minimal for the high temperatures of rapid thermal annealing and unrelated to transient effects

  7. The rate of diffusion into advanced gas cooled reactor moderator bricks: an equivalent cylinder model

    International Nuclear Information System (INIS)

    Kyte, W.S.

    1980-01-01

    The graphite moderator bricks which make up the moderator of an advanced gas-cooled nuclear reactor (AGR) are of many different and complex shapes. Many physico-chemical processes that occur within these porous bricks include a diffusional step and thus to model these processes it is necessary to solve the diffusion equation (with chemical reaction) in a porous medium of complex shape. A finite element technique is applied to calculating the rate at which nitrogen diffuses into and out of the porous moderator graphite during operation of a shutdown procedure for an AGR. However, the finite element method suffers from several disadvantages that undermine its general usefulness for calculating rates of diffusion in AGR moderator cores. A model which overcomes some of these disadvantages is presented (the equivalent cylinder model) and it is shown that this gives good results for a variety of different boundary and initial conditions

  8. Dermic diffusion and stratum corneum: a state of the art review of mathematical models.

    Science.gov (United States)

    Couto, Ana; Fernandes, Rúben; Cordeiro, M Natália S; Reis, Sara S; Ribeiro, Rogério T; Pessoa, Ana M

    2014-03-10

    Transdermal biotechnologies are an ever increasing field of interest, due to the medical and pharmaceutical applications that they underlie. There are several mathematical models at use that permit a more inclusive vision of pure experimental data and even allow practical extrapolation for new dermal diffusion methodologies. However, they grasp a complex variety of theories and assumptions that allocate their use for specific situations. Models based on Fick's First Law found better use in contexts where scaled particle theory Models would be extensive in time-span but the reciprocal is also true, as context of transdermal diffusion of particular active compounds changes. This article reviews extensively the various theoretical methodologies for studying dermic diffusion in the rate limiting dermic barrier, the stratum corneum, and systematizes its characteristics, their proper context of application, advantages and limitations, as well as future perspectives. Copyright © 2013 Elsevier B.V. All rights reserved.

  9. CHEMO-hydrodynamic coupling between forced advection in porous media and self-sustained chemical waves

    Science.gov (United States)

    Atis, S.; Saha, S.; Auradou, H.; Martin, J.; Rakotomalala, N.; Talon, L.; Salin, D.

    2012-09-01

    Autocatalytic reaction fronts between two reacting species in the absence of fluid flow, propagate as solitary waves. The coupling between autocatalytic reaction front and forced simple hydrodynamic flows leads to stationary fronts whose velocity and shape depend on the underlying flow field. We address the issue of the chemico-hydrodynamic coupling between forced advection in porous media and self-sustained chemical waves. Towards that purpose, we perform experiments over a wide range of flow velocities with the well characterized iodate arsenious acid and chlorite-tetrathionate autocatalytic reactions in transparent packed beads porous media. The characteristics of these porous media such as their porosity, tortuosity, and hydrodynamics dispersion are determined. In a pack of beads, the characteristic pore size and the velocity field correlation length are of the order of the bead size. In order to address these two length scales separately, we perform lattice Boltzmann numerical simulations in a stochastic porous medium, which takes into account the log-normal permeability distribution and the spatial correlation of the permeability field. In both experiments and numerical simulations, we observe stationary fronts propagating at a constant velocity with an almost constant front width. Experiments without flow in packed bead porous media with different bead sizes show that the front propagation depends on the tortuous nature of diffusion in the pore space. We observe microscopic effects when the pores are of the size of the chemical front width. We address both supportive co-current and adverse flows with respect to the direction of propagation of the chemical reaction. For supportive flows, experiments and simulations allow observation of two flow regimes. For adverse flow, we observe upstream and downstream front motion as well as static front behaviors over a wide range of flow rates. In order to understand better these observed static state fronts, flow

  10. A Jump-Diffusion Model with Stochastic Volatility and Durations

    DEFF Research Database (Denmark)

    Wei, Wei; Pelletier, Denis

    Market microstructure theories suggest that the durations between transactions carry information about volatility. This paper puts forward a model featuring stochastic volatility, stochastic conditional duration, and jumps to analyze high frequency returns and durations. Durations affect price...... jumps in two ways: as exogenous sampling intervals, and through the interaction with volatility. We adopt a bivariate Ornstein-Ulenbeck process to model intraday volatility and conditional duration. We develop a MCMC algorithm for the inference on irregularly spaced multivariate processes with jumps...

  11. A stochastic solution of the advective transport equation with uncertainty

    International Nuclear Information System (INIS)

    Williams, M.M.R.

    1991-01-01

    A model has been developed for calculating the transport of water-borne radionuclides through layers of porous materials, such as rock or clay. The model is based upon a purely advective transport equation, in which the fluid velocity is a random variable, thereby simulating dispersion in a more realistic manner than the ad hoc introduction of a dispersivity. In addition to a random velocity field, which is an observable physical phenomenon, allowance is made for uncertainty in our knowledge of the parameters which enter the equation, e.g. the retardation coefficient. This too, is assumed to be a random variable and contributes to the stochasticity of the resulting partial differential equation of transport. The stochastic differential equation can be solved analytically and then ensemble averages taken over the associated probability distribution of velocity and retardation coefficient. A method based upon a novel form of the central limit theorem of statistics is employed to obtain tractable solutions of a system consisting of many serial legs of varying properties. One interesting conclusion is that the total flux out of a medium is significantly underestimated by using the deterministic solution with an average transit time compared with that from the stochastically averaged solution. The theory is illustrated numerically for a number of physically relevant cases. (author) 8 figs., 4 tabs., 7 refs

  12. Standard test method for accelerated leach test for diffusive releases from solidified waste and a computer program to model diffusive, fractional leaching from cylindrical waste forms

    CERN Document Server

    American Society for Testing and Materials. Philadelphia

    2008-01-01

    1.1 This test method provides procedures for measuring the leach rates of elements from a solidified matrix material, determining if the releases are controlled by mass diffusion, computing values of diffusion constants based on models, and verifying projected long-term diffusive releases. This test method is applicable to any material that does not degrade or deform during the test. 1.1.1 If mass diffusion is the dominant step in the leaching mechanism, then the results of this test can be used to calculate diffusion coefficients using mathematical diffusion models. A computer program developed for that purpose is available as a companion to this test method (Note 1). 1.1.2 It should be verified that leaching is controlled by diffusion by a means other than analysis of the leach test solution data. Analysis of concentration profiles of species of interest near the surface of the solid waste form after the test is recommended for this purpose. 1.1.3 Potential effects of partitioning on the test results can...

  13. Incorporating Embedded Microporous Layers into Topologically Equivalent Pore Network Models for Oxygen Diffusivity Calculations in Polymer Electrolyte Membrane Fuel Cell Gas Diffusion Layers

    International Nuclear Information System (INIS)

    Fazeli, Mohammadreza; Hinebaugh, James; Bazylak, Aimy

    2016-01-01

    Highlights: • Pore network model for modeling PEMFC MPL-coated GDL effective diffusivity. • Bilayered GDL (substrate and MPL) is modeled with a hybrid network of block MPL elements combined with discrete substrate pores. • Diffusivities of MPL-coated GDLs agree with analytical solutions. - Abstract: In this work, a voxel-based methodology is introduced for the hybridization of a pore network with interspersed nano-porous material elements allowing pore network based oxygen diffusivity calculations in a 3D image of a polymer electrolyte membrane (PEM) fuel cell gas diffusion layer (GDL) with an embedded microporous layer (MPL). The composite GDL is modeled by combining a hybrid network of block MPL elements with prescribed bulk material properties and a topologically equivalent network of larger discrete pores and throats that are directly derived from the 3D image of the GDL substrate. This hybrid network was incorporated into a pore network model, and effective diffusivity predictions of GDL materials with MPL coatings were obtained. Stochastically generated numerical models of carbon paper substrates with and without MPLs were used, and the pore space was directly extracted from this realistic geometry as the input for the pore network model. The effective diffusion coefficient of MPL-coated GDL materials was predicted from 3D images in a pore network modeling environment without resolving the nano-scale structure of the MPL. This method is particularly useful due to the disparate length scales that are involved when attempting to capture pore-scale transport in the GDL. Validation was performed by comparing our predicted diffusivity values to analytical predictions, and excellent agreement was observed. Upon conducting a mesh sensitivity study, it was determined that an MPL element size of 7 μm provided sufficiently high resolution for accurately describing the MPL nano-structure.

  14. Diffusion of Na+ AND Sr2+ tracers in compacted, saturated Na-bentonite: a predictive model

    International Nuclear Information System (INIS)

    Bourg, I.C.; Sposito, G.; Bourg, A.C.M.

    2005-01-01

    Full text of publication follows: A key characteristic of the porosity of compacted bentonite is that it is composed not only of macro- and meso-pores, but also of nanometer-thin interlayer pores. The interlayer pore water is in intimate contact with the negatively charged clay, and has a high cation concentration. Anions are strongly excluded from this region. The fluids present in interlayer pores and in the larger pores of compacted, saturated bentonite or montmorillonite have been described as distinct aqueous phases. This distinction has allowed successful explanations of, e.g., chemo-mechanical coupling in clays. However, it is not used in current models of the diffusion of tracers in compacted, saturated bentonite. We have developed a model of the diffusion of tracers in compacted, saturated Na-bentonite in which the interlayers and larger pores are described as parallel diffusion paths [1]. This model has allowed us to successfully describe the mean principal value of the apparent diffusivity tensor of water tracers in several one-dimensionally compacted, saturated Na-bentonites, in a broad range of partial montmorillonite dry density, using the direction-averaged tortuosity (τ = 1.9 ± 0.6) as a single fitted parameter [2]. We report on the application of the same model to the diffusion of Na + and Sr 2+ tracers in compacted, saturated Na-bentonite. Our model successfully predicts the ratio of the apparent diffusivities of cationic and water tracers, with no fitted parameters, as a function of both partial montmorillonite dry density and ionic strength. Furthermore, we show that a relation between the activation energy of diffusion of Na+ tracers and the partial montmorillonite dry density of Na-bentonite can be derived from our model, and can be fit to experimental data. [1] Diffusion of Water and Inorganic Ions in Compacted Saturated Bentonite, I.C. Bourg (2004), Ph.D. thesis, University of California, Berkeley; [2] Diffusion of Water Tracers in

  15. An extended convection diffusion model for red blood cell-enhanced transport of thrombocytes and leukocytes

    Energy Technology Data Exchange (ETDEWEB)

    Hund, S J; Antaki, J F [Carnegie Mellon University, 700 Technology Dr., CMRI/PTC 4218, Pittsburgh, PA 15219 (United States)], E-mail: shund@andrew.cmu.edu, E-mail: antaki@andrew.cmu.edu

    2009-10-21

    Transport phenomena of platelets and white blood cells (WBCs) are fundamental to the processes of vascular disease and thrombosis. Unfortunately, the dilute volume occupied by these cells is not amenable to fluid-continuum modeling, and yet the cell count is large enough that modeling each individual cell is impractical for most applications. The most feasible option is to treat them as dilute species governed by convection and diffusion; however, this is further complicated by the role of the red blood cell (RBC) phase on the transport of these cells. We therefore propose an extended convection-diffusion (ECD) model based on the diffusive balance of a fictitious field potential, {psi}, that accounts for the gradients of both the dilute phase and the local hematocrit. The ECD model was applied to the flow of blood in a tube and between parallel plates in which a profile for the RBC concentration field was imposed and the resulting platelet concentration field predicted. Compared to prevailing enhanced-diffusion models that dispersed the platelet concentration field, the ECD model was able to simulate a near-wall platelet excess, as observed experimentally. The extension of the ECD model depends only on the ability to prescribe the hematocrit distribution, and therefore may be applied to a wide variety of geometries to investigate platelet-mediated vascular disease and device-related thrombosis.

  16. An extended convection diffusion model for red blood cell-enhanced transport of thrombocytes and leukocytes

    International Nuclear Information System (INIS)

    Hund, S J; Antaki, J F

    2009-01-01

    Transport phenomena of platelets and white blood cells (WBCs) are fundamental to the processes of vascular disease and thrombosis. Unfortunately, the dilute volume occupied by these cells is not amenable to fluid-continuum modeling, and yet the cell count is large enough that modeling each individual cell is impractical for most applications. The most feasible option is to treat them as dilute species governed by convection and diffusion; however, this is further complicated by the role of the red blood cell (RBC) phase on the transport of these cells. We therefore propose an extended convection-diffusion (ECD) model based on the diffusive balance of a fictitious field potential, Ψ, that accounts for the gradients of both the dilute phase and the local hematocrit. The ECD model was applied to the flow of blood in a tube and between parallel plates in which a profile for the RBC concentration field was imposed and the resulting platelet concentration field predicted. Compared to prevailing enhanced-diffusion models that dispersed the platelet concentration field, the ECD model was able to simulate a near-wall platelet excess, as observed experimentally. The extension of the ECD model depends only on the ability to prescribe the hematocrit distribution, and therefore may be applied to a wide variety of geometries to investigate platelet-mediated vascular disease and device-related thrombosis.

  17. Diffusion trajectory of self-propagating innovations interacting with institutions-incorporation of multi-factors learning function to model PV diffusion in Japan

    International Nuclear Information System (INIS)

    Nagamatsu, Akira; Watanabe, Chihiro; Shum, Kwok L.

    2006-01-01

    This paper first proposes a modeling framework to study diffusion of innovations which exhibit strong interaction with the institution systems across which they diffuse. A unique character of such generic innovation is that specific applications are continually developed during its diffusion. This self-propagation in continual applications generation, which is dependent upon the cumulative installed base of the technological innovation, can be modeled to lead to a dynamic changing carrying capacity in an otherwise simple logistic diffusion curve. The cumulative installed base is dependent upon the price of technology and the cost learning dynamics. This paper utilizes a multi-factors learning function to represent such learning dynamics. Empirical estimates from our model are compared with those from other logistics curve formulations and are shown to better fit the annual PV production data during the past quarter century in the case of Japan. The very fact that the potential of this class of innovation can be leveraged only if it interacts closely with the institution highlights the importance of institutional determinants of adoption and diffusion of such innovations like PV. We therefore attempt to put forward an institutional framework, based on viewing PV as a technology platform, to consider PV diffusion beyond mathematical and empirical modeling. Some future research directions are also proposed. (author)

  18. Modeling photovoltaic diffusion: an analysis of geospatial datasets

    International Nuclear Information System (INIS)

    Davidson, Carolyn; Drury, Easan; Lopez, Anthony; Elmore, Ryan; Margolis, Robert

    2014-01-01

    This study combines address-level residential photovoltaic (PV) adoption trends in California with several types of geospatial information—population demographics, housing characteristics, foreclosure rates, solar irradiance, vehicle ownership preferences, and others—to identify which subsets of geospatial information are the best predictors of historical PV adoption. Number of rooms, heating source and house age were key variables that had not been previously explored in the literature, but are consistent with the expected profile of a PV adopter. The strong relationship provided by foreclosure indicators and mortgage status have less of an intuitive connection to PV adoption, but may be highly correlated with characteristics inherent in PV adopters. Next, we explore how these predictive factors and model performance varies between different Investor Owned Utility (IOU) regions in California, and at different spatial scales. Results suggest that models trained with small subsets of geospatial information (five to eight variables) may provide similar explanatory power as models using hundreds of geospatial variables. Further, the predictive performance of models generally decreases at higher resolution, i.e., below ZIP code level since several geospatial variables with coarse native resolution become less useful for representing high resolution variations in PV adoption trends. However, for California we find that model performance improves if parameters are trained at the regional IOU level rather than the state-wide level. We also find that models trained within one IOU region are generally representative for other IOU regions in CA, suggesting that a model trained with data from one state may be applicable in another state. (letter)

  19. A first approximation for modeling the liquid diffusion pathway at the greater confinement disposal facilities

    International Nuclear Information System (INIS)

    Olague, N.E.; Price, L.L.

    1991-01-01

    The greater confinement disposal (GCD) project is an ongoing project examining the disposal of orphan wastes in Area 5 of the Nevada Test Site. One of the major tasks for the project is performance assessment. With regard to performance assessment, a preliminary conceptual model for ground-water flow and radionuclide transport to the accessible environment at the GCD facilities has been developed. One of the transport pathways that has been postulated is diffusion of radionuclides in the liquid phase upward to the land surface. This pathway is not usually considered in a performance assessment, but is included in the GCD conceptual model because of relatively low recharge estimates at the GCD site and the proximity of the waste to the land surface. These low recharge estimates indicate that convective flow downward to the water table may be negligible; thus, diffusion upward to the land surface may then become important. As part of a preliminary performance assessment which considered a basecase scenario and a climate-change scenario, a first approximation for modeling the liquid-diffusion pathway was formulated. The model includes an analytical solution that incorporates both diffusion and radioactivity decay. Overall, these results indicate that, despite the configuration of the GCD facilities that establishes the need for considering the liquid-diffusion pathway, the GCD disposal concept appears to be a technically feasible method for disposing of orphan wastes. Future analyses will consist of investigating the underlying assumptions of the liquid-diffusion model, refining the model is necessary, and reducing uncertainty in the input parameters. 11 refs., 6 figs

  20. Diffusion models for corona formation in metagabbros from the Western Grenville Province, Canada

    Science.gov (United States)

    Grant, Shona M.

    1988-01-01

    Metagabbro bodies in SW Grenville Province display a variety of disequilibrium corona textures between spinel-clouded plagioclase and primary olivine or opaque oxide. Textural evidence favours a single-stage, subsolidus origin for the olivine coronas and diffusive mass transfer is believed to have been the rate-controlling process. Irreversible thermodynamics have been used to model two different garnet symplectite-bearing corona sequences in terms of steady state diffusion. In the models the flux of each component is related to the chemical potential gradients of all diffusing species by the Onsager or L-coefficients for diffusion. These coefficients are analogous to experimentally determined diffusion coefficients ( d), but relate the flux of components to chemical potential rather than concentration gradients. The major constraint on the relative values of Onsager coefficients comes from the observed mole fraction, X, of garnet in the symplectites; in (amph-gt) symplectites X {Gt/Sym}˜0.80, compared with ˜0.75 in (cpx-gt) symplectites. Several models using simple oxide components, and two different modifications of the reactant plagioclase composition, give the following qualitative results: the very low mobility of aluminium appears to control the rate of corona formation. Mg and Fe have similar mobility, and Mg can be up to 6 8 times more mobile than sodium. Determination of calcium mobility is problematical because of a proposed interaction with cross-coefficient terms reflecting “uphill” Ca-diffusion, i.e., calcium diffusing up its own chemical potential gradient. If these terms are not introduced, it is difficult to generate the required proportions of garnet in the symplectite. However, at moderate values of the cross-coefficient ratios, Mg can be up to 4 6 times more mobile than calcium ( L MgMg/LCaCaCaCa/LAlAl>3).

  1. Force Field Benchmark of Amino Acids: I. Hydration and Diffusion in Different Water Models.

    Science.gov (United States)

    Zhang, Haiyang; Yin, Chunhua; Jiang, Yang; van der Spoel, David

    2018-04-18

    Thermodynamic and kinetic properties are of critical importance for the applicability of computational models to biomolecules such as proteins. Here we present an extensive evaluation of the Amber ff99SB-ILDN force field for modeling of hydration and diffusion of amino acids with three-site (SPC, SPC/E, SPC/E b , and TIP3P), four-site (TIP4P, TIP4P-Ew, and TIP4P/2005), and five-site (TIP5P and TIP5P-Ew) water models. Hydration free energies (HFEs) of neutral amino acid side chain analogues have little dependence on the water model, with a root-mean-square error (RMSE) of ∼1 kcal/mol from experimental observations. On the basis of the number of interacting sites in the water model, HFEs of charged side chains can be putatively classified into three groups, of which the group of three-site models lies between those of four- and five-site water models; for each group, the water model dependence is greatly eliminated when the solvent Galvani potential is considered. Some discrepancies in the location of the first hydration peak ( R RDF ) in the ion-water radial distribution function between experimental and calculated observations were detected, such as a systematic underestimation of the acetate (Asp side chain) ion. The RMSE of calculated diffusion coefficients of amino acids from experiment increases linearly with the increasing diffusion coefficients of the solvent water models at infinite dilution. TIP3P has the fastest diffusivity, in line with literature findings, while the "FB" and "OPC" water model families as well as TIP4P/2005 perform well, within a relative error of 5%, and TIP4P/2005 yields the most accurate estimate for the water diffusion coefficient. All of the tested water models overestimate amino acid diffusion coefficients by approximately 40% (TIP4P/2005) to 200% (TIP3P). Scaling of protein-water interactions with TIP4P/2005 in the Amber ff99SBws and ff03ws force fields leads to more negative HFEs but has little influence on the diffusion of

  2. Fitting the CDO correlation skew: a tractable structural jump-diffusion model

    DEFF Research Database (Denmark)

    Willemann, Søren

    2007-01-01

    We extend a well-known structural jump-diffusion model for credit risk to handle both correlations through diffusion of asset values and common jumps in asset value. Through a simplifying assumption on the default timing and efficient numerical techniques, we develop a semi-analytic framework...... allowing for instantaneous calibration to heterogeneous CDS curves and fast computation of CDO tranche spreads. We calibrate the model to CDX and iTraxx data from February 2007 and achieve a satisfactory fit. To price the senior tranches for both indices, we require a risk-neutral probability of a market...

  3. Continuous-time random-walk model for anomalous diffusion in expanding media

    Science.gov (United States)

    Le Vot, F.; Abad, E.; Yuste, S. B.

    2017-09-01

    Expanding media are typical in many different fields, e.g., in biology and cosmology. In general, a medium expansion (contraction) brings about dramatic changes in the behavior of diffusive transport properties such as the set of positional moments and the Green's function. Here, we focus on the characterization of such effects when the diffusion process is described by the continuous-time random-walk (CTRW) model. As is well known, when the medium is static this model yields anomalous diffusion for a proper choice of the probability density function (pdf) for the jump length and the waiting time, but the behavior may change drastically if a medium expansion is superimposed on the intrinsic random motion of the diffusing particle. For the case where the jump length and the waiting time pdfs are long-tailed, we derive a general bifractional diffusion equation which reduces to a normal diffusion equation in the appropriate limit. We then study some particular cases of interest, including Lévy flights and subdiffusive CTRWs. In the former case, we find an analytical exact solution for the Green's function (propagator). When the expansion is sufficiently fast, the contribution of the diffusive transport becomes irrelevant at long times and the propagator tends to a stationary profile in the comoving reference frame. In contrast, for a contracting medium a competition between the spreading effect of diffusion and the concentrating effect of contraction arises. In the specific case of a subdiffusive CTRW in an exponentially contracting medium, the latter effect prevails for sufficiently long times, and all the particles are eventually localized at a single point in physical space. This "big crunch" effect, totally absent in the case of normal diffusion, stems from inefficient particle spreading due to subdiffusion. We also derive a hierarchy of differential equations for the moments of the transport process described by the subdiffusive CTRW model in an expanding medium

  4. Modeling of Particle Acceleration at Multiple Shocks via Diffusive Shock Acceleration: Preliminary Results

    Science.gov (United States)

    Parker, L. Neergaard; Zank, G. P.

    2013-01-01

    Successful forecasting of energetic particle events in space weather models require algorithms for correctly predicting the spectrum of ions accelerated from a background population of charged particles. We present preliminary results from a model that diffusively accelerates particles at multiple shocks. Our basic approach is related to box models in which a distribution of particles is diffusively accelerated inside the box while simultaneously experiencing decompression through adiabatic expansion and losses from the convection and diffusion of particles outside the box. We adiabatically decompress the accelerated particle distribution between each shock by either the method explored in Melrose and Pope (1993) and Pope and Melrose (1994) or by the approach set forth in Zank et al. (2000) where we solve the transport equation by a method analogous to operator splitting. The second method incorporates the additional loss terms of convection and diffusion and allows for the use of a variable time between shocks. We use a maximum injection energy (E(sub max)) appropriate for quasi-parallel and quasi-perpendicular shocks and provide a preliminary application of the diffusive acceleration of particles by multiple shocks with frequencies appropriate for solar maximum (i.e., a non-Markovian process).

  5. Social Content Recommendation Based on Spatial-Temporal Aware Diffusion Modeling in Social Networks

    Directory of Open Access Journals (Sweden)

    Farman Ullah

    2016-09-01

    Full Text Available User interactions in online social networks (OSNs enable the spread of information and enhance the information dissemination process, but at the same time they exacerbate the information overload problem. In this paper, we propose a social content recommendation method based on spatial-temporal aware controlled information diffusion modeling in OSNs. Users interact more frequently when they are close to each other geographically, have similar behaviors, and fall into similar demographic categories. Considering these facts, we propose multicriteria-based social ties relationship and temporal-aware probabilistic information diffusion modeling for controlled information spread maximization in OSNs. The proposed social ties relationship modeling takes into account user spatial information, content trust, opinion similarity, and demographics. We suggest a ranking algorithm that considers the user ties strength with friends and friends-of-friends to rank users in OSNs and select highly influential injection nodes. These nodes are able to improve social content recommendations, minimize information diffusion time, and maximize information spread. Furthermore, the proposed temporal-aware probabilistic diffusion process categorizes the nodes and diffuses the recommended content to only those users who are highly influential and can enhance information dissemination. The experimental results show the effectiveness of the proposed scheme.

  6. Direct diffusion tensor estimation using a model-based method with spatial and parametric constraints.

    Science.gov (United States)

    Zhu, Yanjie; Peng, Xi; Wu, Yin; Wu, Ed X; Ying, Leslie; Liu, Xin; Zheng, Hairong; Liang, Dong

    2017-02-01

    To develop a new model-based method with spatial and parametric constraints (MB-SPC) aimed at accelerating diffusion tensor imaging (DTI) by directly estimating the diffusion tensor from highly undersampled k-space data. The MB-SPC method effectively incorporates the prior information on the joint sparsity of different diffusion-weighted images using an L1-L2 norm and the smoothness of the diffusion tensor using a total variation seminorm. The undersampled k-space datasets were obtained from fully sampled DTI datasets of a simulated phantom and an ex-vivo experimental rat heart with acceleration factors ranging from 2 to 4. The diffusion tensor was directly reconstructed by solving a minimization problem with a nonlinear conjugate gradient descent algorithm. The reconstruction performance was quantitatively assessed using the normalized root mean square error (nRMSE) of the DTI indices. The MB-SPC method achieves acceptable DTI measures at an acceleration factor up to 4. Experimental results demonstrate that the proposed method can estimate the diffusion tensor more accurately than most existing methods operating at higher net acceleration factors. The proposed method can significantly reduce artifact, particularly at higher acceleration factors or lower SNRs. This method can easily be adapted to MR relaxometry parameter mapping and is thus useful in the characterization of biological tissue such as nerves, muscle, and heart tissue. © 2016 American Association of Physicists in Medicine.

  7. Assessing Quasi-Steady State in Evaporation of Sessile Drops by Diffusion Models

    Science.gov (United States)

    Martin, Cameron; Nguyen, Hoa; Kelly-Zion, Peter; Pursell, Chris

    2017-11-01

    The vapor distributions surrounding sessile drops of methanol are modeled as the solutions of the steady-state and transient diffusion equations using Matlab's PDE Toolbox. The goal is to determine how quickly the transient diffusive transport reaches its quasi-steady state as the droplet geometry is varied between a Weber's disc, a real droplet shape, and a spherical cap with matching thickness or contact angle. We assume that the only transport mechanism at work is diffusion. Quasi-steady state is defined using several metrics, such as differences between the transient and steady-state solutions, and change in the transient solution over time. Knowing the vapor distribution, the gradient is computed to evaluate the diffusive flux. The flux is integrated along the surface of a control volume surrounding the drop to obtain the net rate of diffusion out of the volume. Based on the differences between the transient and steady-state diffusive fluxes at the discrete points along the control-volume surface, the time to reach quasi-steady state evaporation is determined and is consistent with other proposed measurements. By varying the dimensions of the control volume, we can also assess what regimes have equivalent or different quasi-steady states for different droplet geometries. Petroleum Research Fund.

  8. Oxygen diffusion in a network model of the myocardial microcirculation

    NARCIS (Netherlands)

    Wieringa, P. A.; Stassen, H. G.; van Kan, J. J.; Spaan, J. A.

    1993-01-01

    Oxygen supply was studied in a three-dimensional capillary network model of the myocardial microcirculation. Capillary networks were generated using one common strategy to locate the capillary branchings and segments, arterioles and venules. Flow paths developed with different capillary flow

  9. An agent-based model for diffusion of electric vehicles

    NARCIS (Netherlands)

    Kangur, Ayla; Jager, Wander; Verbrugge, Rineke; Bockarjova, Marija

    2017-01-01

    The transition from fuel cars to electric cars is a large-scale process involving many interactions between consumers and other stakeholders over decades. To explore how policies may interact with consumer behavior over such a long time period, we developed an agent-based social simulation model. In

  10. STEPS: efficient simulation of stochastic reaction–diffusion models in realistic morphologies

    Directory of Open Access Journals (Sweden)

    Hepburn Iain

    2012-05-01

    Full Text Available Abstract Background Models of cellular molecular systems are built from components such as biochemical reactions (including interactions between ligands and membrane-bound proteins, conformational changes and active and passive transport. A discrete, stochastic description of the kinetics is often essential to capture the behavior of the system accurately. Where spatial effects play a prominent role the complex morphology of cells may have to be represented, along with aspects such as chemical localization and diffusion. This high level of detail makes efficiency a particularly important consideration for software that is designed to simulate such systems. Results We describe STEPS, a stochastic reaction–diffusion simulator developed with an emphasis on simulating biochemical signaling pathways accurately and efficiently. STEPS supports all the above-mentioned features, and well-validated support for SBML allows many existing biochemical models to be imported reliably. Complex boundaries can be represented accurately in externally generated 3D tetrahedral meshes imported by STEPS. The powerful Python interface facilitates model construction and simulation control. STEPS implements the composition and rejection method, a variation of the Gillespie SSA, supporting diffusion between tetrahedral elements within an efficient search and update engine. Additional support for well-mixed conditions and for deterministic model solution is implemented. Solver accuracy is confirmed with an original and extensive validation set consisting of isolated reaction, diffusion and reaction–diffusion systems. Accuracy imposes upper and lower limits on tetrahedron sizes, which are described in detail. By comparing to Smoldyn, we show how the voxel-based approach in STEPS is often faster than particle-based methods, with increasing advantage in larger systems, and by comparing to MesoRD we show the efficiency of the STEPS implementation. Conclusion STEPS simulates

  11. Modelling the link amongst fine-pore diffuser fouling, oxygen transfer efficiency, and aeration energy intensity.

    Science.gov (United States)

    Garrido-Baserba, Manel; Sobhani, Reza; Asvapathanagul, Pitiporn; McCarthy, Graham W; Olson, Betty H; Odize, Victory; Al-Omari, Ahmed; Murthy, Sudhir; Nifong, Andrea; Godwin, Johnnie; Bott, Charles B; Stenstrom, Michael K; Shaw, Andrew R; Rosso, Diego

    2017-03-15

    This research systematically studied the behavior of aeration diffuser efficiency over time, and its relation to the energy usage per diffuser. Twelve diffusers were selected for a one year fouling study. Comprehensive aeration efficiency projections were carried out in two WRRFs with different influent rates, and the influence of operating conditions on aeration diffusers' performance was demonstrated. This study showed that the initial energy use, during the first year of operation, of those aeration diffusers located in high rate systems (with solids retention time - SRT-less than 2 days) increased more than 20% in comparison to the conventional systems (2 > SRT). Diffusers operating for three years in conventional systems presented the same fouling characteristics as those deployed in high rate processes for less than 15 months. A new procedure was developed to accurately project energy consumption on aeration diffusers; including the impacts of operation conditions, such SRT and organic loading rate, on specific aeration diffusers materials (i.e. silicone, polyurethane, EPDM, ceramic). Furthermore, it considers the microbial colonization dynamics, which successfully correlated with the increase of energy consumption (r 2 :0.82 ± 7). The presented energy model projected the energy costs and the potential savings for the diffusers after three years in operation in different operating conditions. Whereas the most efficient diffusers provided potential costs spanning from 4900 USD/Month for a small plant (20 MGD, or 74,500 m 3 /d) up to 24,500 USD/Month for a large plant (100 MGD, or 375,000 m 3 /d), other diffusers presenting less efficiency provided spans from 18,000USD/Month for a small plant to 90,000 USD/Month for large plants. The aim of this methodology is to help utilities gain more insight into process mechanisms and design better energy efficiency strategies at existing facilities to reduce energy consumption. Copyright © 2016 Elsevier Ltd. All

  12. Application of Parameter Estimation for Diffusions and Mixture Models

    DEFF Research Database (Denmark)

    Nolsøe, Kim

    error models. This is obtained by constructing an estimating function through projections of some chosen function of Yti+1 onto functions of previous observations Yti ; : : : ; Yt0 . The process of interest Xti+1 is partially observed through a measurement equation Yti+1 = h(Xti+1)+ noice, where h......(:) is restricted to be a polynomial. Through a simulation study we compare for the CIR process the obtained estimator with an estimator derived from utilizing the extended Kalman filter. The simulation study shows that the two estimation methods perform equally well.......The first part of this thesis proposes a method to determine the preferred number of structures, their proportions and the corresponding geometrical shapes of an m-membered ring molecule. This is obtained by formulating a statistical model for the data and constructing an algorithm which samples...

  13. A Chemo-Mechanical Model of Diffusion in Reactive Systems

    Directory of Open Access Journals (Sweden)

    Kerstin Weinberg

    2018-02-01

    Full Text Available The functional properties of multi-component materials are often determined by a rearrangement of their different phases and by chemical reactions of their components. In this contribution, a material model is presented which enables computational simulations and structural optimization of solid multi-component systems. Typical Systems of this kind are anodes in batteries, reactive polymer blends and propellants. The physical processes which are assumed to contribute to the microstructural evolution are: (i particle exchange and mechanical deformation; (ii spinodal decomposition and phase coarsening; (iii chemical reactions between the components; and (iv energetic forces associated with the elastic field of the solid. To illustrate the capability of the deduced coupled field model, three-dimensional Non-Uniform Rational Basis Spline (NURBS based finite element simulations of such multi-component structures are presented.

  14. Climate change alters diffusion of forest pest: A model study

    Science.gov (United States)

    Jo, Woo Seong; Kim, Hwang-Yong; Kim, Beom Jun

    2017-01-01

    Population dynamics with spatial information is applied to understand the spread of pests. We introduce a model describing how pests spread in discrete space. The number of pest descendants at each site is controlled by local information such as temperature, precipitation, and the density of pine trees. Our simulation leads to a pest spreading pattern comparable to the real data for pine needle gall midge in the past. We also simulate the model in two different climate conditions based on two different representative concentration pathways scenarios for the future. We observe that after an initial stage of a slow spread of pests, a sudden change in the spreading speed occurs, which is soon followed by a large-scale outbreak. We found that a future climate change causes the outbreak point to occur earlier and that the detailed spatio-temporal pattern of the spread depends on the source position from which the initial pest infection starts.

  15. Network Modelling of Capillary Pressure Curves, Permeability, and Diffusivity.

    Czech Academy of Sciences Publication Activity Database

    Čapek, P.; Hejtmánek, Vladimír; Brabec, Libor; Zikánová, Arlette; Kočiřík, Milan

    2007-01-01

    Roč. 62, 18-20 (2007) , s. 5117-5122 ISSN 0009-2509 R&D Projects: GA ČR(CZ) GA203/05/0347 Institutional research plan: CEZ:AV0Z40720504; CEZ:AV0Z40400503 Keywords : porous media * pore network model * stochastic reconstruction Subject RIV: CF - Physical ; Theoretical Chemistry Impact factor: 1.775, year: 2007

  16. A Series Solution of the Cauchy Problem for Turing Reaction-diffusion Model

    Directory of Open Access Journals (Sweden)

    L. Päivärinta

    2011-12-01

    Full Text Available In this paper, the series pattern solution of the Cauchy problem for Turing reaction-diffusion model is obtained by using the homotopy analysis method (HAM. Turing reaction-diffusion model is nonlinear reaction-diffusion system which usually has power-law nonlinearities or may be rewritten in the form of power-law nonlinearities. Using the HAM, it is possible to find the exact solution or an approximate solution of the problem. This technique provides a series of functions which converges rapidly to the exact solution of the problem. The efficiency of the approach will be shown by applying the procedure on two problems. Furthermore, the so-called homotopy-Pade technique (HPT is applied to enlarge the convergence region and rate of solution series given by the HAM.

  17. MODELING OF SUPERCRITICAL FLUID EXTRACTION KINETIC OF FLAXSEED OIL BY DIFFUSION CONTROL METHOD

    Directory of Open Access Journals (Sweden)

    Emir Zafer HOŞGÜN

    2013-06-01

    Full Text Available In this study, Flaxseed oil was extracted by Supercritical Carbondioxide Extraction, and extractionkinetics was modelled using diffusion controlled method.The effect of process parameters, such as pressure (20, 35, 55 MPa, temperature (323 and 343 K, and CO2 flow rate (1 and 3 L CO2 /min on the extraction yield and effective diffusivity (De was investigated. The effective diffusion coefficient varied between 2.4 x10-12 and 10.8 x10-12 m2s-1 for the entire range of experiments and increased with the pressure and flow rate. The model fitted well theexperimental data (ADD varied between 2.35 and 7.48%.

  18. Biomixing generated by benthic filterfeeders: A diffusion model for near-bottom phytoplankton depletion

    DEFF Research Database (Denmark)

    Scheel Larsen, Poul; Riisgård, H.U.

    1997-01-01

    Transient concentration distributions of flagellate cells (Rhodomonas sp.) measured in laboratory experiments (Riisgård et al., 1996 a,b) have been examined to develop a diffusion model for the process of phytoplankton depletion in stagnant seawater above populations of benthic filter......-feeders, the polychaete Nereis diversicolor and the ascidian Ciona intestinalis, respectively. The model is based on sinks located at inhalant openings and Fick's law with an effective diffusivity that decreases with distance above the bottom due to the biomixing generated by exhalant and inhalant feeding currents. For N....... diversicolor, having inhalant and exhalant openings flush with the sediment surface and a moderate exhalant jet velocity of about 0.01 m s-1, concentration boundary layer growth is retarded and limited by the low values of diffusivity prevailing at heights greater than about 0.05 m above the bottom. For C...

  19. Comparing finite elements and finite differences for developing diffusive models of glioma growth.

    Science.gov (United States)

    Roniotis, Alexandros; Marias, Kostas; Sakkalis, Vangelis; Stamatakos, Georgios; Zervakis, Michalis

    2010-01-01

    Glioma is the most aggressive type of brain tumor. Several mathematical models have been developed during the last two decades, towards simulating the mechanisms that govern the development of glioma. The most common models use the diffusion-reaction equation (DRE) for simulating the spatiotemporal variation of tumor cell concentration. The proposed diffusive models have mainly used finite differences (FDs) or finite elements (FEs) for the approximation of the solution of the partial differential DRE. This paper presents experimental results on the comparison of the FEs and FDs, especially focused on the glioma model case. It is studied how the different meshes of brain can affect computational consistency, simulation time and efficiency of the model. The experiments have been studied on a test case, for which there is a known algebraic expression of the solution. Thus, it is possible to calculate the error that the different models yield.

  20. pH imaging reveals worsened tissue acidification in diffusion kurtosis lesion than the kurtosis/diffusion lesion mismatch in an animal model of acute stroke.

    Science.gov (United States)

    Wang, Enfeng; Wu, Yin; Cheung, Jerry S; Zhou, Iris Yuwen; Igarashi, Takahiro; Zhang, XiaoAn; Sun, Phillip Zhe

    2017-10-01

    Diffusion weighted imaging (DWI) has been commonly used in acute stroke examination, yet a portion of DWI lesion may be salvageable. Recently, it has been shown that diffusion kurtosis imaging (DKI) defines the most severely damaged DWI lesion that does not renormalize following early reperfusion. We postulated that the diffusion and kurtosis lesion mismatch experience heterogeneous hemodynamic and/or metabolic injury. We investigated tissue perfusion, pH, diffusion, kurtosis and relaxation from regions of the contralateral normal area, diffusion lesion, kurtosis lesion and their mismatch in an animal model of acute stroke. Our study revealed significant kurtosis and diffusion lesion volume mismatch (19.7 ± 10.7%, P mismatch, we showed lower pH in the kurtosis lesion (pH = 6.64 ± 0.12) from that of the kurtosis/diffusion lesion mismatch (6.84 ± 0.11, P mismatch agreed well with literature values for regions of ischemic core and penumbra, respectively. Our work documented initial evidence that DKI may reveal the heterogeneous metabolic derangement within the commonly used DWI lesion.

  1. A Geometrical Model for Diffusion of Hydrophilic Compounds in Human Stratum Corneum.

    Science.gov (United States)

    Yu, Fang; Kasting, Gerald B

    2018-03-08

    A three-dimensional diffusion model with either hexagonal or cylindrical symmetry has been constructed to simulate desorption profiles of hydrophilic chemicals from the topmost layer of human skin (the stratum corneum) as measured in ex vivo studies. The tissue is pierced by skin appendages - sweat glands and hair follicles - which in this particular scenario are considered to be perfect sinks. Desorption profiles of nine test permeants covering a wide range of lipophilicity were analyzed. By optimizing transverse and lateral diffusion coefficients to match these profiles, it was found that the lateral diffusivity values exceeded the transverse values by average factors ranging from 45 (hexagon model) to 71 (cylinder model). However, transverse clearance exceeded lateral clearance by factors ranging from 8 to 27 (cylinder model); these values were strongly influenced by the thickness of the individual tissue samples, as expected. The results confirm the validity of earlier estimates of transverse diffusivity of hydrophilic compounds in human stratum corneum based on purely one-dimensional models. They furthermore confirm that transcellular transport is an important component of the stratum corneum's polar pathway, in addition to the already-recognized appendageal transport mechanism. Copyright © 2018. Published by Elsevier Inc.

  2. Spatially explicit control of invasive species using a reaction-diffusion model

    Science.gov (United States)

    Bonneau, Mathieu; Johnson, Fred A.; Romagosa, Christina M.

    2016-01-01

    Invasive species, which can be responsible for severe economic and environmental damages, must often be managed over a wide area with limited resources, and the optimal allocation of effort in space and time can be challenging. If the spatial range of the invasive species is large, control actions might be applied only on some parcels of land, for example because of property type, accessibility, or limited human resources. Selecting the locations for control is critical and can significantly impact management efficiency. To help make decisions concerning the spatial allocation of control actions, we propose a simulation based approach, where the spatial distribution of the invader is approximated by a reaction–diffusion model. We extend the classic Fisher equation to incorporate the effect of control both in the diffusion and local growth of the invader. The modified reaction–diffusion model that we propose accounts for the effect of control, not only on the controlled locations, but on neighboring locations, which are based on the theoretical speed of the invasion front. Based on simulated examples, we show the superiority of our model compared to the state-of-the-art approach. We illustrate the use of this model for the management of Burmese pythons in the Everglades (Florida, USA). Thanks to the generality of the modified reaction–diffusion model, this framework is potentially suitable for a wide class of management problems and provides a tool for managers to predict the effects of different management strategies.

  3. Decomposing encoding and decisional components in visual-word recognition: a diffusion model analysis.

    Science.gov (United States)

    Gomez, Pablo; Perea, Manuel

    2014-01-01

    In a diffusion model, performance as measured by latency and accuracy in two-choice tasks is decomposed into different parameters that can be linked to underlying cognitive processes. Although the diffusion model has been utilized to account for lexical decision data, the effects of stimulus manipulations in previous experiments originated from just one parameter: the quality of the evidence. Here we examined whether the diffusion model can be used to effectively decompose the underlying processes during visual-word recognition. We explore this issue in an experiment that features a lexical manipulation (word frequency) that we expected to affect mostly the quality of the evidence (the drift rate parameter), and a perceptual manipulation (stimulus orientation) that presumably affects the nondecisional time (the Ter parameter, time of encoding and response) more than it affects the drift rate. Results showed that although the manipulations do not affect only one parameter, word frequency and stimulus orientation had differential effects on the model's parameters. Thus, the diffusion model is a useful tool to decompose the effects of stimulus manipulations in visual-word recognition.

  4. STEPS: Modeling and Simulating Complex Reaction-Diffusion Systems with Python

    OpenAIRE

    Wils, Stefan; Schutter, Erik De

    2009-01-01

    We describe how the use of the Python language improved the user interface of the program STEPS. STEPS is a simulation platform for modeling and stochastic simulation of coupled reaction-diffusion systems with complex 3-dimensional boundary conditions. Setting up such models is a complicated process that consists of many phases. Initial versions of STEPS relied on a static input format that did not cleanly separate these phases, limiting modelers in how they could control the simulation and b...

  5. Theoretical model estimation of guest diffusion in Metal-Organic Frameworks (MOFs)

    KAUST Repository

    Zheng, Bin

    2015-08-11

    Characterizing molecule diffusion in nanoporous matrices is critical to understanding the novel chemical and physical properties of metal-organic frameworks (MOFs). In this paper, we developed a theoretical model to fastly and accurately compute the diffusion rate of guest molecules in a zeolitic imidazolate framework-8 (ZIF-8). The ideal gas or equilibrium solution diffusion model was modified to contain the effect of periodical media via introducing the possibility of guests passing through the framework gate. The only input in our model is the energy barrier of guests passing through the MOF’s gate. Molecular dynamics (MD) methods were employed to gather the guest density profile, which then was used to deduce the energy barrier values. This produced reliable results that require a simulation time of 5 picoseconds, which is much shorter when using pure MD methods (in the billisecond scale) . Also, we used density functional theory (DFT) methods to obtain the energy profile of guests passing through gates, as this does not require specification of a force field for the MOF degrees of freedom. In the DFT calculation, we only considered one gate of MOFs each time; as this greatly reduced the computational cost. Based on the obtained energy barrier values we computed the diffusion rate of alkane and alcohol in ZIF-8 using our model, which was in good agreement with experimental test results and the calculation values from standard MD model. Our model shows the advantage of obtaining accurate diffusion rates for guests in MOFs for a lower computational cost and shorter calculation time. Thus, our analytic model calculation is especially attractive for high-throughput computational screening of the dynamic performance of guests in a framework.

  6. Developing a laser shockwave model for characterizing diffusion bonded interfaces

    Science.gov (United States)

    Lacy, Jeffrey M.; Smith, James A.; Rabin, Barry H.

    2015-03-01

    The US National Nuclear Security Agency has a Global Threat Reduction Initiative (GTRI) with the goal of reducing the worldwide use of high-enriched uranium (HEU). A salient component of that initiative is the conversion of research reactors from HEU to low enriched uranium (LEU) fuels. An innovative fuel is being developed to replace HEU in high-power research reactors. The new LEU fuel is a monolithic fuel made from a U-Mo alloy foil encapsulated in Al-6061 cladding. In order to support the fuel qualification process, the Laser Shockwave Technique (LST) is being developed to characterize the clad-clad and fuel-clad interface strengths in fresh and irradiated fuel plates. LST is a non-contact method that uses lasers for the generation and detection of large amplitude acoustic waves to characterize interfaces in nuclear fuel plates. However, because the deposition of laser energy into the containment layer on a specimen's surface is intractably complex, the shock wave energy is inferred from the surface velocity measured on the backside of the fuel plate and the depth of the impression left on the surface by the high pressure plasma pulse created by the shock laser. To help quantify the stresses generated at the interfaces, a finite element method (FEM) model is being utilized. This paper will report on initial efforts to develop and validate the model by comparing numerical and experimental results for back surface velocities and front surface depressions in a single aluminum plate representative of the fuel cladding.

  7. A GPU Reaction Diffusion Soil-Microbial Model

    Science.gov (United States)

    Falconer, Ruth; Houston, Alasdair; Schmidt, Sonja; Otten, Wilfred

    2014-05-01

    Parallelised algorithms are frequent in bioinformatics as a consequence of the close link to informatics - however in the field of soil science and ecology they are less prevalent. A current challenge in soil ecology is to link habitat structure to microbial dynamics. Soil science is therefore entering the 'big data' paradigm as a consequence of integrating data pertinent to the physical soil environment obtained via imaging and theoretical models describing growth and development of microbial dynamics permitting accurate analyses of spatio-temporal properties of different soil microenvironments. The microenvironment is often captured by 3D imaging (CT tomography) which yields large datasets and when used in computational studies the physical sizes of the samples that are amenable to computation are less than 1 cm3. Today's commodity graphics cards are programmable and possess a data parallel architecture that in many cases is capable of out-performing the CPU in terms of computational rates. The programmable aspect is achieved via a low-level parallel programming language (CUDA, OpenCL and DirectX). We ported a Soil-Microbial Model onto the GPU using the DirectX Compute API. We noted a significant computational speed up as well as an increase in the physical size that can be simulated. Some of the drawbacks of such an approach were concerned with numerical precision and the steep learning curve associated with GPGPU technologies.

  8. Validation of a Computational Model for the SLS Core Stage Oxygen Tank Diffuser Concept and the Low Profile Diffuser - An Advanced Development Design for the SLS

    Science.gov (United States)

    Brodnick, Jacob; Richardson, Brian; Ramachandran, Narayanan

    2015-01-01

    The Low Profile Diffuser (LPD) project originated as an award from the Marshall Space Flight Center (MSFC) Advanced Development (ADO) office to the Main Propulsion Systems Branch (ER22). The task was created to develop and test an LPD concept that could produce comparable performance to a larger, traditionally designed, ullage gas diffuser while occupying a smaller volume envelope. Historically, ullage gas diffusers have been large, bulky devices that occupy a significant portion of the propellant tank, decreasing the tank volume available for propellant. Ullage pressurization of spacecraft propellant tanks is required to prevent boil-off of cryogenic propellants and to provide a positive pressure for propellant extraction. To achieve this, ullage gas diffusers must slow hot, high-pressure gas entering a propellant tank from supersonic speeds to only a few meters per second. Decreasing the incoming gas velocity is typically accomplished through expansion to larger areas within the diffuser which has traditionally led to large diffuser lengths. The Fluid Dynamics Branch (ER42) developed and applied advanced Computational Fluid Dynamics (CFD) analysis methods in order to mature the LPD design from and initial concept to an optimized test prototype and to provide extremely accurate pre-test predictions of diffuser performance. Additionally, the diffuser concept for the Core Stage of the Space Launch System (SLS) was analyzed in a short amount of time to guide test data collection efforts of the qualification of the device. CFD analysis of the SLS diffuser design provided new insights into the functioning of the device and was qualitatively validated against hot wire anemometry of the exterior flow field. Rigorous data analysis of the measurements was performed on static and dynamic pressure data, data from two microphones, accelerometers and hot wire anemometry with automated traverse. Feasibility of the LPD concept and validation of the computational model were

  9. An Evaluation of Semiempirical Models for Partitioning Photosynthetically Active Radiation Into Diffuse and Direct Beam Components

    Science.gov (United States)

    Oliphant, Andrew J.; Stoy, Paul C.

    2018-03-01

    Photosynthesis is more efficient under diffuse than direct beam photosynthetically active radiation (PAR) per unit PAR, but diffuse PAR is infrequently measured at research sites. We examine four commonly used semiempirical models (Erbs et al., 1982, https://doi.org/10.1016/0038-092X(82)90302-4; Gu et al., 1999, https://doi.org/10.1029/1999JD901068; Roderick, 1999, https://doi.org/10.1016/S0168-1923(99)00028-3; Weiss & Norman, 1985, https://doi.org/10.1016/0168-1923(85)90020-6) that partition PAR into diffuse and direct beam components based on the negative relationship between atmospheric transparency and scattering of PAR. Radiation observations at 58 sites (140 site years) from the La Thuille FLUXNET data set were used for model validation and coefficient testing. All four models did a reasonable job of predicting the diffuse fraction of PAR (ϕ) at the 30 min timescale, with site median r2 values ranging between 0.85 and 0.87, model efficiency coefficients (MECs) between 0.62 and 0.69, and regression slopes within 10% of unity. Model residuals were not strongly correlated with astronomical or standard meteorological variables. We conclude that the Roderick (1999, https://doi.org/10.1016/S0168-1923(99)00028-3) and Gu et al. (1999, https://doi.org/10.1029/1999JD901068) models performed better overall than the two older models. Using the basic form of these models, the data set was used to find both individual site and universal model coefficients that optimized predictive accuracy. A new universal form of the model is presented in section 5 that increased site median MEC to 0.73. Site-specific model coefficients increased median MEC further to 0.78, indicating usefulness of local/regional training of coefficients to capture the local distributions of aerosols and cloud types.

  10. Determination of Matrix Diffusion Properties of Granite

    International Nuclear Information System (INIS)

    Holtta, Pirkko; Siitari-Kauppi, Marja; Huittinen, Nina; Poteri, Antti

    2007-01-01

    Rock-core column experiments were introduced to estimate the diffusion and sorption properties of Kuru Grey granite used in block-scale experiments. The objective was to examine the processes causing retention in solute transport through rock fractures, especially matrix diffusion. The objective was also to estimate the importance of retention processes during transport in different scales and flow conditions. Rock-core columns were constructed from cores drilled into the fracture and were placed inside tubes to form flow channels in the 0.5 mm gap between the cores and the tube walls. Tracer experiments were performed using uranin, HTO, 36 Cl, 131 I, 22 Na and 85 Sr at flow rates of 1-50 μL.min -1 . Rock matrix was characterized using 14 C-PMMA method, scanning electron microscopy (SEM), energy dispersive X-ray micro analysis (EDX) and the B.E.T. method. Solute mass flux through a column was modelled by applying the assumption of a linear velocity profile and molecular diffusion. Coupling of the advection and diffusion processes was based on the model of generalised Taylor dispersion in the linear velocity profile. Experiments could be modelled applying a consistent parameterization and transport processes. The results provide evidence that it is possible to investigate matrix diffusion at the laboratory scale. The effects of matrix diffusion were demonstrated on the slightly-sorbing tracer breakthrough curves. Based on scoping calculations matrix diffusion begins to be clearly observable for non-sorbing tracer when the flow rate is 0.1 μL.min -1 . The experimental results presented here cannot be transferred directly to the spatial and temporal scales that prevail in an underground repository. However, the knowledge and understanding of transport and retention processes gained from this study is transferable to different scales from laboratory to in-situ conditions. (authors)

  11. On diffusion processes with variable drift rates as models for decision making during learning

    International Nuclear Information System (INIS)

    Eckhoff, P; Holmes, P; Law, C; Connolly, P M; Gold, J I

    2008-01-01

    We investigate Ornstein-Uhlenbeck and diffusion processes with variable drift rates as models of evidence accumulation in a visual discrimination task. We derive power-law and exponential drift-rate models and characterize how parameters of these models affect the psychometric function describing performance accuracy as a function of stimulus strength and viewing time. We fit the models to psychophysical data from monkeys learning the task to identify parameters that best capture performance as it improves with training. The most informative parameter was the overall drift rate describing the signal-to-noise ratio of the sensory evidence used to form the decision, which increased steadily with training. In contrast, secondary parameters describing the time course of the drift during motion viewing did not exhibit steady trends. The results indicate that relatively simple versions of the diffusion model can fit behavior over the course of training, thereby giving a quantitative account of learning effects on the underlying decision process

  12. Analysing model fit of psychometric process models: An overview, a new test and an application to the diffusion model.

    Science.gov (United States)

    Ranger, Jochen; Kuhn, Jörg-Tobias; Szardenings, Carsten

    2017-05-01

    Cognitive psychometric models embed cognitive process models into a latent trait framework in order to allow for individual differences. Due to their close relationship to the response process the models allow for profound conclusions about the test takers. However, before such a model can be used its fit has to be checked carefully. In this manuscript we give an overview over existing tests of model fit and show their relation to the generalized moment test of Newey (Econometrica, 53, 1985, 1047) and Tauchen (J. Econometrics, 30, 1985, 415). We also present a new test, the Hausman test of misspecification (Hausman, Econometrica, 46, 1978, 1251). The Hausman test consists of a comparison of two estimates of the same item parameters which should be similar if the model holds. The performance of the Hausman test is evaluated in a simulation study. In this study we illustrate its application to two popular models in cognitive psychometrics, the Q-diffusion model and the D-diffusion model (van der Maas, Molenaar, Maris, Kievit, & Boorsboom, Psychol Rev., 118, 2011, 339; Molenaar, Tuerlinckx, & van der Maas, J. Stat. Softw., 66, 2015, 1). We also compare the performance of the test to four alternative tests of model fit, namely the M 2 test (Molenaar et al., J. Stat. Softw., 66, 2015, 1), the moment test (Ranger et al., Br. J. Math. Stat. Psychol., 2016) and the test for binned time (Ranger & Kuhn, Psychol. Test. Asess. , 56, 2014b, 370). The simulation study indicates that the Hausman test is superior to the latter tests. The test closely adheres to the nominal Type I error rate and has higher power in most simulation conditions. © 2017 The British Psychological Society.

  13. Improved Modeling and Understanding of Diffusion-Media Wettability on Polymer-Electrolyte-Fuel-Cell Performance

    Energy Technology Data Exchange (ETDEWEB)

    Weber, Adam

    2010-03-05

    A macroscopic-modeling methodology to account for the chemical and structural properties of fuel-cell diffusion media is developed. A previous model is updated to include for the first time the use of experimentally measured capillary pressure -- saturation relationships through the introduction of a Gaussian contact-angle distribution into the property equations. The updated model is used to simulate various limiting-case scenarios of water and gas transport in fuel-cell diffusion media. Analysis of these results demonstrate that interfacial conditions are more important than bulk transport in these layers, where the associated mass-transfer resistance is the result of higher capillary pressures at the boundaries and the steepness of the capillary pressure -- saturation relationship. The model is also used to examine the impact of a microporous layer, showing that it dominates the response of the overall diffusion medium. In addition, its primary mass-transfer-related effect is suggested to be limiting the water-injection sites into the more porous gas-diffusion layer.

  14. Sufficient Stochastic Maximum Principle in a Regime-Switching Diffusion Model

    International Nuclear Information System (INIS)

    Donnelly, Catherine

    2011-01-01

    We prove a sufficient stochastic maximum principle for the optimal control of a regime-switching diffusion model. We show the connection to dynamic programming and we apply the result to a quadratic loss minimization problem, which can be used to solve a mean-variance portfolio selection problem.

  15. Method of moments approach to pricing double barrier contracts in polynomial jump-diffusion models

    NARCIS (Netherlands)

    Eriksson, B.; Pistorius, M.

    2011-01-01

    Abstract: We present a method of moments approach to pricing double barrier contracts when the underlying is modelled by a polynomial jump-diffusion. By general principles the price is linked to certain infinite dimensional linear programming problems. Subsequently approximating these by finite

  16. A surface diffuse scattering model for the mobility of electrons in surface charge coupled devices

    International Nuclear Information System (INIS)

    Ionescu, M.

    1977-01-01

    An analytical model for the mobility of electrons in surface charge coupled devices is studied on the basis of the results previously obtained, considering a surface diffuse scattering; the importance of the results obtained for a better understanding of the influence of the fringing field in surface charge coupled devices is discussed. (author)

  17. A thick-interface model for diffusive and massiv phase transformation in substitutional alloys

    Czech Academy of Sciences Publication Activity Database

    Svoboda, Jiří; Vala, J.; Gamsjäger, E.; Fischer, F. D.

    2006-01-01

    Roč. 54, č. 15 (2006), s. 3953-3960 ISSN 1359-6454 R&D Projects: GA AV ČR IAA200410601 Institutional research plan: CEZ:AV0Z20410507 Keywords : phase transformation * diffusion * modelling Subject RIV: JG - Metallurgy Impact factor: 3.549, year: 2006

  18. Numerical method for a 2D drift diffusion model arising in strained n ...

    Indian Academy of Sciences (India)

    This paper reports the calculation of electron transport in metal oxide semiconductor field effects transistors (MOSFETs) with biaxially tensile strained silicon channel. The calculation is formulated based on two-dimensional drift diffusion model (DDM) including strain effects. The carrier mobility dependence on the lateral and ...

  19. Fast and accurate calculations for cumulative first-passage time distributions in Wiener diffusion models

    DEFF Research Database (Denmark)

    Blurton, Steven Paul; Kesselmeier, M.; Gondan, Matthias

    2012-01-01

    We propose an improved method for calculating the cumulative first-passage time distribution in Wiener diffusion models with two absorbing barriers. This distribution function is frequently used to describe responses and error probabilities in choice reaction time tasks. The present work extends ...

  20. Comparative study of model prediction of diffuse nutrient losses in response to changes in agricultural practices

    Czech Academy of Sciences Publication Activity Database

    Vagstad, N.; French, H. K.; Andersen, H. E.; Behrendt, H.; Grizzetti, B.; Groenendijk, P.; Lo Porto, A.; Reisser, H.; Siderius, C.; Stromquist, J.; Hejzlar, Josef; Deelstra, J.

    2009-01-01

    Roč. 11, č. 3 (2009), s. 594-601 ISSN 1464-0325 Grant - others:EC(XE) EVK1-CT-2001-00096 Institutional research plan: CEZ:AV0Z60170517 Keywords : catchment modelling * phosphorus and nitrogen losses * agriculture practice * diffuse sources Subject RIV: DJ - Water Pollution ; Quality Impact factor: 2.225, year: 2009